BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016971
         (379 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1UL4|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa
           Promoter Binding Protein-Like 4
          Length = 94

 Score =  105 bits (261), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 48/74 (64%), Positives = 56/74 (75%)

Query: 88  CLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRS 147
           C VD C +D+   + YHRRHKVCE+H+K   V + G  QRFCQQCSRFH L+EFDE KRS
Sbjct: 11  CQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRS 70

Query: 148 CRKRLDGHNRRRRK 161
           CR+RL GHN RRRK
Sbjct: 71  CRRRLAGHNERRRK 84


>pdb|1WJ0|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa
           Promoter Binding Protein-Like 12 Lacking The Second
           Zinc- Binding Site
          Length = 60

 Score = 88.2 bits (217), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 38/55 (69%), Positives = 42/55 (76%)

Query: 88  CLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFD 142
           C VD C +DLS  +DYHRRHKVCE+HSK    L+ G  QRFCQQCSRFH LEEFD
Sbjct: 6   CQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60


>pdb|1UL5|A Chain A, Solution Structure Of The Dna-binding Domain Of Squamosa
           Promoter Binding Protein-like 7
          Length = 88

 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/79 (49%), Positives = 57/79 (72%), Gaps = 1/79 (1%)

Query: 85  TASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEG 144
            A C V  C++D+S  + YH+RH+VC   +    V++ G+ +R+CQQC +FH L +FDEG
Sbjct: 3   VARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEG 62

Query: 145 KRSCRKRLDGH-NRRRRKP 162
           KRSCR++L+ H NRR+RKP
Sbjct: 63  KRSCRRKLERHNNRRKRKP 81


>pdb|3MAW|A Chain A, Structure Of The Newcastle Disease Virus F Protein In The
           Po Conformation
 pdb|3MAW|B Chain B, Structure Of The Newcastle Disease Virus F Protein In The
           Po Conformation
          Length = 483

 Score = 28.5 bits (62), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 13  EFEQEAIPNVDAVDESSSRTKGNFSVDLKLGQVNSSAEDSLNKCKE 58
           EF+     N+  +D S     GN  +  +LG VN+S  ++L+K +E
Sbjct: 408 EFDATYQKNISILD-SQVIVTGNLDISTELGNVNNSISNALDKLEE 452


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.128    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,983,118
Number of Sequences: 62578
Number of extensions: 422789
Number of successful extensions: 634
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 631
Number of HSP's gapped (non-prelim): 7
length of query: 379
length of database: 14,973,337
effective HSP length: 100
effective length of query: 279
effective length of database: 8,715,537
effective search space: 2431634823
effective search space used: 2431634823
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)