Query 016971
Match_columns 379
No_of_seqs 190 out of 334
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 06:49:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016971.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016971hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ul4_A SPL4, squamosa promoter 100.0 6.9E-44 2.4E-48 294.5 0.2 89 80-168 3-91 (94)
2 1ul5_A SPL7, squamosa promoter 100.0 6E-42 2.1E-46 280.1 -0.7 82 85-166 3-84 (88)
3 1wj0_A Squamosa promoter-bindi 100.0 3.4E-32 1.2E-36 208.8 3.1 59 84-142 2-60 (60)
4 2lau_A THAP domain-containing 27.2 31 0.0011 26.1 2.1 11 85-95 4-14 (81)
5 1vk6_A NADH pyrophosphatase; 1 23.5 17 0.00058 33.8 -0.0 37 100-137 100-136 (269)
6 4a6q_A Histone deacetylase com 21.3 18 0.00063 31.8 -0.2 28 104-142 20-47 (143)
7 2d8r_A THAP domain-containing 19.7 53 0.0018 26.0 2.2 12 86-97 10-21 (99)
8 2dt7_A Splicing factor 3A subu 13.9 23 0.0008 24.5 -1.1 11 97-107 19-29 (38)
9 1gh9_A 8.3 kDa protein (gene M 13.8 66 0.0023 25.0 1.3 28 109-139 6-33 (71)
10 2zaj_A Membrane-associated gua 12.9 79 0.0027 22.6 1.4 19 361-379 1-19 (49)
No 1
>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=6.9e-44 Score=294.52 Aligned_cols=89 Identities=55% Similarity=1.005 Sum_probs=80.6
Q ss_pred CCCCCCcceeeCCCccccccccccccccccchhhcCCCeEeEcCeeehhhhhccccccccccccchhHHHHHHhHHHhhh
Q 016971 80 NNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRR 159 (379)
Q Consensus 80 ~~~~~~~~CqV~GC~~dLs~~k~Y~rR~rVCe~H~ka~~V~v~G~~qRFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RR 159 (379)
+.|++.++||||||++||+.+|+||+||||||+|+||++|+|+|+++||||||+|||+|+|||++|||||+||++||+||
T Consensus 3 ~~~~~~~~CqV~GC~~dL~~~k~Y~rR~rvCe~H~ka~~V~~~G~~~RFCQQCsrFH~L~eFD~~kRSCR~rL~~hn~RR 82 (94)
T 1ul4_A 3 SGSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERR 82 (94)
T ss_dssp -----CCCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCCC
T ss_pred CCCCCCCceecCCCCcchhhHHHHHHhhhhhHHHhcCCEEEECChhHHHHHHHhccCCHHHhccccchHHHHHHHHHHHh
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCC
Q 016971 160 RKPQPDPLS 168 (379)
Q Consensus 160 Rk~q~~~~~ 168 (379)
||+++++..
T Consensus 83 Rk~~~~~~~ 91 (94)
T 1ul4_A 83 RKSSGESGP 91 (94)
T ss_dssp CSCCCC---
T ss_pred ccCCCCcCC
Confidence 999999764
No 2
>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=6e-42 Score=280.09 Aligned_cols=82 Identities=45% Similarity=0.976 Sum_probs=78.9
Q ss_pred CcceeeCCCccccccccccccccccchhhcCCCeEeEcCeeehhhhhccccccccccccchhHHHHHHhHHHhhhcCCCC
Q 016971 85 TASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQP 164 (379)
Q Consensus 85 ~~~CqV~GC~~dLs~~k~Y~rR~rVCe~H~ka~~V~v~G~~qRFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRRk~q~ 164 (379)
.++||||||++||+.+|+||+||||||.|+||++|+|+|+++||||||+|||+|+|||++|||||+||++||+||||++.
T Consensus 3 ~~~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRR~~~~ 82 (88)
T 1ul5_A 3 VARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKPV 82 (88)
T ss_dssp CCSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCSC
T ss_pred CCeeecCCCCCChhHhhHHHhhccccHHHcCCCEEEECCEeeHHHHHhccccChhhhccccchHHHHHHHHHHHhccCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred CC
Q 016971 165 DP 166 (379)
Q Consensus 165 ~~ 166 (379)
+.
T Consensus 83 ~~ 84 (88)
T 1ul5_A 83 DK 84 (88)
T ss_dssp SS
T ss_pred cC
Confidence 64
No 3
>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=99.97 E-value=3.4e-32 Score=208.82 Aligned_cols=59 Identities=64% Similarity=1.186 Sum_probs=57.2
Q ss_pred CCcceeeCCCccccccccccccccccchhhcCCCeEeEcCeeehhhhhccccccccccc
Q 016971 84 QTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFD 142 (379)
Q Consensus 84 ~~~~CqV~GC~~dLs~~k~Y~rR~rVCe~H~ka~~V~v~G~~qRFCQQC~rFH~L~eFD 142 (379)
+.++||||||++||+.+|+||+||||||+|+||++|+++|+++||||||+|||+|+|||
T Consensus 2 ~~~~CqV~gC~~dl~~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQCsrFH~L~eFD 60 (60)
T 1wj0_A 2 SAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60 (60)
T ss_dssp -CEECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred CCceeecCCCCcChhHhHHHhhccccChhHcCCCEEEECCEEEehhhhccCccCcccCC
Confidence 46899999999999999999999999999999999999999999999999999999998
No 4
>2lau_A THAP domain-containing protein 11; zinc finger, protein-DNA complex, DNA binding domain, transc factor, CCCH, transcription-DNA complex; NMR {Homo sapiens}
Probab=27.18 E-value=31 Score=26.09 Aligned_cols=11 Identities=36% Similarity=0.818 Sum_probs=7.7
Q ss_pred CcceeeCCCcc
Q 016971 85 TASCLVDGCDS 95 (379)
Q Consensus 85 ~~~CqV~GC~~ 95 (379)
...|-|.||..
T Consensus 4 G~~C~v~gC~n 14 (81)
T 2lau_A 4 GFTCCVPGCYN 14 (81)
T ss_dssp CCSCCCSSSSS
T ss_pred CCEEEeCCCcC
Confidence 34688888864
No 5
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=23.47 E-value=17 Score=33.82 Aligned_cols=37 Identities=16% Similarity=0.290 Sum_probs=28.0
Q ss_pred ccccccccccchhhcCCCeEeEcCeeehhhhhcccccc
Q 016971 100 CRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHC 137 (379)
Q Consensus 100 ~k~Y~rR~rVCe~H~ka~~V~v~G~~qRFCQQC~rFH~ 137 (379)
+..++++++-|..+- ++.+..++...+.|..|+..|-
T Consensus 100 l~~w~~~~~fC~~CG-~~~~~~~~~~~~~C~~C~~~~y 136 (269)
T 1vk6_A 100 LAEFYRSHKYCGYCG-HEMYPSKTEWAMLCSHCRERYY 136 (269)
T ss_dssp HHHHHHTTSBCTTTC-CBEEECSSSSCEEESSSSCEEC
T ss_pred HHhhhhcCCccccCC-CcCccCCCceeeeCCCCCCEec
Confidence 456788999998865 4555678888899999986553
No 6
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=21.30 E-value=18 Score=31.79 Aligned_cols=28 Identities=32% Similarity=0.576 Sum_probs=22.8
Q ss_pred ccccccchhhcCCCeEeEcCeeehhhhhccccccccccc
Q 016971 104 HRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFD 142 (379)
Q Consensus 104 ~rR~rVCe~H~ka~~V~v~G~~qRFCQQC~rFH~L~eFD 142 (379)
--|.++|+.+.+ -||.+=++||.++||.
T Consensus 20 idRektcPfLLR-----------vF~~~ng~hh~~~eF~ 47 (143)
T 4a6q_A 20 IDREKTCPLLLR-----------VFTTNNGRHHRMDEFS 47 (143)
T ss_dssp CCGGGSCCEEEE-----------EEEESSSSCCCGGGGC
T ss_pred ccccCCCCeEEE-----------EEecCCCCCCCHHHcc
Confidence 358899999764 4777768999999997
No 7
>2d8r_A THAP domain-containing protein 2; NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.16
Probab=19.72 E-value=53 Score=26.02 Aligned_cols=12 Identities=25% Similarity=0.858 Sum_probs=8.9
Q ss_pred cceeeCCCcccc
Q 016971 86 ASCLVDGCDSDL 97 (379)
Q Consensus 86 ~~CqV~GC~~dL 97 (379)
..|-|.||...-
T Consensus 10 ~~C~v~gC~n~~ 21 (99)
T 2d8r_A 10 TNCAAAGCATTY 21 (99)
T ss_dssp CCCCSSSCCCSC
T ss_pred CeeEeCCCCCCC
Confidence 468888998653
No 8
>2dt7_A Splicing factor 3A subunit 3; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=13.86 E-value=23 Score=24.52 Aligned_cols=11 Identities=36% Similarity=1.017 Sum_probs=6.5
Q ss_pred ccccccccccc
Q 016971 97 LSNCRDYHRRH 107 (379)
Q Consensus 97 Ls~~k~Y~rR~ 107 (379)
|..+|+||+||
T Consensus 19 lk~Ike~Hrr~ 29 (38)
T 2dt7_A 19 LKQIKEFHRKH 29 (38)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHHhC
Confidence 44556666665
No 9
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=13.78 E-value=66 Score=24.99 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=21.3
Q ss_pred cchhhcCCCeEeEcCeeehhhhhcccccccc
Q 016971 109 VCELHSKTPQVLICGQKQRFCQQCSRFHCLE 139 (379)
Q Consensus 109 VCe~H~ka~~V~v~G~~qRFCQQC~rFH~L~ 139 (379)
.|+ .....++-+|....-|+ ||+-|.+.
T Consensus 6 ~C~--C~~~~~~~~~~kT~~C~-CG~~~~~~ 33 (71)
T 1gh9_A 6 RCD--CGRALYSREGAKTRKCV-CGRTVNVK 33 (71)
T ss_dssp EET--TSCCEEEETTCSEEEET-TTEEEECC
T ss_pred ECC--CCCEEEEcCCCcEEECC-CCCeeeec
Confidence 476 55567778899999998 99776554
No 10
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens}
Probab=12.86 E-value=79 Score=22.64 Aligned_cols=19 Identities=37% Similarity=0.737 Sum_probs=14.1
Q ss_pred cCCCCCCCCCCCCCcccCC
Q 016971 361 GYDGSAASDTPQTIPFHWE 379 (379)
Q Consensus 361 g~dGss~~~~~~~lpF~We 379 (379)
|+-|+.+.+....||.-||
T Consensus 1 ~~~~~~~~~~~~~LP~GWe 19 (49)
T 2zaj_A 1 GSSGSSGLDSELELPAGWE 19 (49)
T ss_dssp CCCSCCCCCCSSCCCTTEE
T ss_pred CCCCccccCCCCCCCcCce
Confidence 4556666666778999996
Done!