BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016972
         (379 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WH7|A Chain A, Solution Structure Of Homeobox Domain Of Arabidopsis
           Thaliana Hypothetical Protein F22k18.140
          Length = 80

 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 38/58 (65%), Positives = 46/58 (79%)

Query: 234 KRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKST 291
           KRFRTKF+  QKEKM  FAER+GW++QK DD  V +FC E GV R VLK+WMHNNK++
Sbjct: 18  KRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNS 75


>pdb|1WH5|A Chain A, Solution Structure Of Homeobox Domain Of
           Arabidopsisthaliana Zinc Finger Homeobox Family Protein
          Length = 80

 Score = 84.7 bits (208), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 45/57 (78%)

Query: 233 RKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289
           RKR RTKF+  QKE+M   AER+GW++Q++DD+++  FC E GV R VLKVW+HNNK
Sbjct: 17  RKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNK 73


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.130    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,756,893
Number of Sequences: 62578
Number of extensions: 134565
Number of successful extensions: 242
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 240
Number of HSP's gapped (non-prelim): 2
length of query: 379
length of database: 14,973,337
effective HSP length: 100
effective length of query: 279
effective length of database: 8,715,537
effective search space: 2431634823
effective search space used: 2431634823
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)