BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016972
(379 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SEZ1|HB29_ARATH Transcription factor HB29 OS=Arabidopsis thaliana GN=HB29 PE=1 SV=1
Length = 242
Score = 194 bits (494), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 107/230 (46%), Positives = 134/230 (58%), Gaps = 42/230 (18%)
Query: 72 VTYKECLKNHAASIGGHALDGCGEFMPSPTATPSDPTSLKCAACGCHRNFHRREPDQDHH 131
V YKECLKNHAA++GGHALDGCGEFMPSPTAT +DP+SL+CAACGCHRNFHRR+P ++ +
Sbjct: 29 VCYKECLKNHAANLGGHALDGCGEFMPSPTATSTDPSSLRCAACGCHRNFHRRDPSENLN 88
Query: 132 LPHVPTTATTATIEYQPHHRHHPPPPVTQPPSRRSPSSASPPPISSSYYPSAP--HMLLA 189
P ++ + E PPSR S P+ SYY SAP H++L+
Sbjct: 89 FLTAPPISSPSGTE--------------SPPSRHVSS-----PVPCSYYTSAPPHHVILS 129
Query: 190 LSGNLQQSSAAAAVPQENHHISNNHHHNNNNIMMSNSGGSSGGRKRFRTKFSQSQKEKMF 249
LS S + ++ S + RKR RTKF+ QK KM
Sbjct: 130 LSSGFPGPS-----------------DQDPTVVRSENSSRGAMRKRTRTKFTPEQKIKMR 172
Query: 250 EFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRDLNG 299
FAE+ GWK+ D+ V EFCNEVG++R VLKVWMHNNK + LNG
Sbjct: 173 AFAEKAGWKINGCDEKSVREFCNEVGIERGVLKVWMHNNKYSL----LNG 218
>sp|Q9SB61|Y4466_ARATH ZF-HD homeobox protein At4g24660 OS=Arabidopsis thaliana
GN=At4g24660 PE=1 SV=1
Length = 220
Score = 154 bits (389), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 93/224 (41%), Positives = 114/224 (50%), Gaps = 51/224 (22%)
Query: 72 VTYKECLKNHAASIGGHALDGCGEFMPSPTATPSDPTSLKCAACGCHRNFHRREPDQDHH 131
+ Y+ECLKNHA +IGGHA+DGC EFMPS D +LKCAACGCHRNFHR+E
Sbjct: 47 IRYRECLKNHAVNIGGHAVDGCCEFMPSGEDGTLD--ALKCAACGCHRNFHRKE------ 98
Query: 132 LPHVPTTATTATIEYQPHHRHHPPPPVTQPPSRRSPSSASPPPISSSYYPSAPHMLLALS 191
T + P + + PP P QPP
Sbjct: 99 -----TESIGGRAHRVPTYYNRPPQP-HQPP----------------------------- 123
Query: 192 GNLQQSSAAAAVPQENHHISNNHHHNNNNIMMSNSGGSSGGRKRFRTKFSQSQKEKMFEF 251
G L +S AA + + SN S G KRFRTKF+ QKEKM F
Sbjct: 124 GYLHLTSPAAP--------YRPPAASGDEEDTSNPSSSGGTTKRFRTKFTAEQKEKMLAF 175
Query: 252 AERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKR 295
AER+GW++QK DD V +FC E GV R VLK+WMHNNK++ K+
Sbjct: 176 AERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSLGKK 219
>sp|Q9FKP8|Y5541_ARATH ZF-HD homeobox protein At5g65410 OS=Arabidopsis thaliana
GN=At5g65410 PE=1 SV=1
Length = 279
Score = 151 bits (381), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 88/222 (39%), Positives = 114/222 (51%), Gaps = 45/222 (20%)
Query: 74 YKECLKNHAASIGGHALDGCGEFMPSPTATPSDPTSLKCAACGCHRNFHRREPDQDHHLP 133
++ECLKN A +IGGHA+DGCGEFMP+ D +LKCAACGCHRNFHR+E LP
Sbjct: 75 FRECLKNQAVNIGGHAVDGCGEFMPAGIEGTID--ALKCAACGCHRNFHRKE------LP 126
Query: 134 HVPTTATTATIEYQPHHRHHPPPPVTQPPSRRSPSSASPPPISSSYYPSAPHMLLALSGN 193
+ P + P PV S PPP S
Sbjct: 127 YFHHAPPQHQPPPPPPGFYRLPAPV----------SYRPPP----------------SQA 160
Query: 194 LQQSSAAAAVPQENHHISNNHHHNNNNIMMSNSGGSSGG-RKRFRTKFSQSQKEKMFEFA 252
A +E + + M ++S + GG RKR RTKF+ QKE+M A
Sbjct: 161 PPLQLALPPPQRER----------SEDPMETSSAEAGGGIRKRHRTKFTAEQKERMLALA 210
Query: 253 ERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAK 294
ER+GW++Q++DD+++ FC E GV R VLKVW+HNNK T K
Sbjct: 211 ERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHTLGK 252
>sp|Q9C0A1|ZFHX2_HUMAN Zinc finger homeobox protein 2 OS=Homo sapiens GN=ZFHX2 PE=2 SV=3
Length = 2572
Score = 38.5 bits (88), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 232 GRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKST 291
G++R+RT+ S Q + M E + + L E +G+ + V++VW N ++
Sbjct: 2064 GQRRYRTQMSSLQLKIMKACYEAYRTPTMQECEVLGEE----IGLPKRVIQVWFQNARAK 2119
Query: 292 FAKRDLNG-AGGSGSGSAGGGIGRINLD 318
K L G A GS GS+ G + D
Sbjct: 2120 EKKAKLQGTAAGSTGGSSEGLLAAQRTD 2147
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 14/62 (22%)
Query: 234 KRFRTKFSQSQKEKMFEFAERVGWKMQ-----KRDDDLVHEFCNEVGVDRTVLKVWMHNN 288
KR RT Q E ++ W MQ ++ D + E EVG+ + V++VW N
Sbjct: 1858 KRLRTTILPEQLEILYR------WYMQDSNPTRKMLDCISE---EVGLKKRVVQVWFQNT 1908
Query: 289 KS 290
++
Sbjct: 1909 RA 1910
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 231 GGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289
GR+ RTKF++ Q + + F E + D V + +G+ V+ VW N +
Sbjct: 1593 AGRRFSRTKFTEFQTQALQSFFETSAYP----KDGEVERLASLLGLASRVVVVWFQNAR 1647
>sp|P34326|HM16_CAEEL Homeobox protein engrailed-like ceh-16 OS=Caenorhabditis elegans
GN=ceh-16 PE=2 SV=3
Length = 187
Score = 35.8 bits (81), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 69/148 (46%), Gaps = 28/148 (18%)
Query: 154 PPPPVTQP---PSRRSPSSASP---PPISSSYYPSAPHMLLALSGNLQQSSAAAAVPQEN 207
P P ++ P PS SP+ ASP P I+SS YP A + + S +A P+
Sbjct: 18 PSPTISTPATSPSSISPTFASPNGTPNIASSMYP-------AWVFSTRYSDRPSAGPR-- 68
Query: 208 HHISNNHHHNNNNIMMSNSGGSSGGRKRFRTKFSQSQKEKM-FEFAERVGWKMQKRDDDL 266
H + + S GSS KR RT F+ Q +++ EF E + +KR +L
Sbjct: 69 -------HRKSRKRESTGSSGSSEEEKRPRTAFTGDQLDRLKTEFRE-SRYLTEKRRQEL 120
Query: 267 VHEFCNEVGVDRTVLKVWMHNNKSTFAK 294
H E+G++ + +K+W N ++ K
Sbjct: 121 AH----ELGLNESQIKIWFQNKRAKLKK 144
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.126 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 166,025,758
Number of Sequences: 539616
Number of extensions: 8197643
Number of successful extensions: 157784
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 750
Number of HSP's that attempted gapping in prelim test: 65279
Number of HSP's gapped (non-prelim): 58524
length of query: 379
length of database: 191,569,459
effective HSP length: 119
effective length of query: 260
effective length of database: 127,355,155
effective search space: 33112340300
effective search space used: 33112340300
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)