Query 016972
Match_columns 379
No_of_seqs 174 out of 297
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 06:50:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016972.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016972hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wh7_A ZF-HD homeobox family p 99.9 4.4E-22 1.5E-26 158.1 6.5 66 229-294 13-78 (80)
2 1wh5_A ZF-HD homeobox family p 99.8 7.5E-22 2.6E-26 156.2 6.5 66 229-294 13-78 (80)
3 2da4_A Hypothetical protein DK 99.7 3E-18 1E-22 133.9 1.1 68 229-296 4-71 (80)
4 1wi3_A DNA-binding protein SAT 99.7 1.4E-17 4.8E-22 131.6 3.7 62 229-293 3-64 (71)
5 2dmq_A LIM/homeobox protein LH 99.7 9E-18 3.1E-22 130.7 2.4 65 230-298 4-68 (80)
6 2da3_A Alpha-fetoprotein enhan 99.6 4.3E-17 1.5E-21 126.4 3.2 65 229-297 13-77 (80)
7 2dms_A Homeobox protein OTX2; 99.6 1.4E-16 4.7E-21 124.4 4.9 68 230-301 4-71 (80)
8 2cra_A Homeobox protein HOX-B1 99.6 8.7E-16 3E-20 117.2 5.1 64 230-297 4-67 (70)
9 2dmt_A Homeobox protein BARH-l 99.6 1E-15 3.4E-20 119.8 5.2 65 229-297 13-77 (80)
10 2kt0_A Nanog, homeobox protein 99.6 2.3E-15 8E-20 118.0 6.8 66 229-298 18-83 (84)
11 2da2_A Alpha-fetoprotein enhan 99.6 9.8E-16 3.3E-20 116.5 3.9 64 230-297 4-67 (70)
12 2djn_A Homeobox protein DLX-5; 99.6 1E-15 3.5E-20 116.8 4.0 64 230-297 4-67 (70)
13 2dmu_A Homeobox protein goosec 99.6 8.8E-16 3E-20 117.0 2.7 63 231-297 5-67 (70)
14 2da1_A Alpha-fetoprotein enhan 99.5 1.3E-15 4.5E-20 115.8 3.0 64 230-297 4-67 (70)
15 1bw5_A ISL-1HD, insulin gene e 99.5 2.9E-15 1E-19 112.9 3.6 61 232-296 2-62 (66)
16 2cue_A Paired box protein PAX6 99.5 3.2E-16 1.1E-20 122.6 -2.0 62 231-296 5-66 (80)
17 2vi6_A Homeobox protein nanog; 99.5 2.5E-15 8.4E-20 112.1 2.8 60 232-295 2-61 (62)
18 2e1o_A Homeobox protein PRH; D 99.5 2E-15 6.9E-20 115.2 2.3 64 230-297 4-67 (70)
19 2dn0_A Zinc fingers and homeob 99.5 7.3E-15 2.5E-19 113.9 5.3 64 232-299 7-70 (76)
20 2hdd_A Protein (engrailed home 99.5 1.8E-15 6.3E-20 112.4 1.7 60 232-295 2-61 (61)
21 2m0c_A Homeobox protein arista 99.5 8.9E-15 3E-19 111.9 4.5 64 230-297 6-69 (75)
22 2l7z_A Homeobox protein HOX-A1 99.5 1.2E-14 3.9E-19 112.2 4.9 65 231-299 5-69 (73)
23 1nk2_P Homeobox protein VND; h 99.5 4.7E-15 1.6E-19 115.2 2.6 63 230-296 6-68 (77)
24 2cuf_A FLJ21616 protein; homeo 99.5 3.5E-15 1.2E-19 120.3 1.7 68 230-301 4-86 (95)
25 1b8i_A Ultrabithorax, protein 99.5 3.8E-15 1.3E-19 117.1 1.9 62 231-296 18-79 (81)
26 2h1k_A IPF-1, pancreatic and d 99.5 2.8E-15 9.7E-20 112.3 0.9 61 232-296 2-62 (63)
27 2dmn_A Homeobox protein TGIF2L 99.5 1.3E-14 4.4E-19 114.9 4.4 69 230-299 4-72 (83)
28 1ahd_P Antennapedia protein mu 99.5 3.9E-15 1.3E-19 113.4 1.0 62 233-298 2-63 (68)
29 3a01_A Homeodomain-containing 99.5 6.3E-15 2.2E-19 118.9 1.9 66 229-298 13-78 (93)
30 1ig7_A Homeotic protein MSX-1; 99.5 5.6E-15 1.9E-19 108.4 1.4 57 234-294 1-57 (58)
31 3rkq_A Homeobox protein NKX-2. 99.5 8E-15 2.7E-19 106.7 1.9 57 233-293 2-58 (58)
32 2ecc_A Homeobox and leucine zi 99.5 1.8E-14 6.1E-19 114.6 3.9 61 235-299 5-65 (76)
33 1zq3_P PRD-4, homeotic bicoid 99.5 4E-15 1.4E-19 113.2 -0.0 63 233-299 2-64 (68)
34 1jgg_A Segmentation protein EV 99.5 7.2E-15 2.5E-19 108.9 1.3 58 234-295 2-59 (60)
35 1yz8_P Pituitary homeobox 2; D 99.5 2.6E-15 8.8E-20 114.0 -1.1 63 232-298 2-64 (68)
36 3nar_A ZHX1, zinc fingers and 99.5 1.2E-14 4.2E-19 117.5 2.7 64 229-296 21-84 (96)
37 1fjl_A Paired protein; DNA-bin 99.5 7.8E-15 2.7E-19 114.8 1.2 62 230-295 15-76 (81)
38 1ftt_A TTF-1 HD, thyroid trans 99.5 1.5E-14 5.1E-19 110.0 2.3 61 233-297 2-62 (68)
39 1puf_A HOX-1.7, homeobox prote 99.5 1.6E-14 5.6E-19 112.2 2.5 62 230-295 10-71 (77)
40 2r5y_A Homeotic protein sex co 99.5 9.5E-15 3.2E-19 116.1 1.1 62 231-296 26-87 (88)
41 2ly9_A Zinc fingers and homeob 99.4 4.5E-14 1.5E-18 108.3 4.7 61 233-297 6-66 (74)
42 2k40_A Homeobox expressed in E 99.4 1.4E-14 4.9E-19 109.4 1.8 61 233-297 1-61 (67)
43 1du6_A PBX1, homeobox protein 99.4 2.3E-14 7.7E-19 107.3 2.8 63 232-295 2-64 (64)
44 1akh_A Protein (mating-type pr 99.4 1.9E-14 6.6E-19 106.5 2.1 58 232-293 4-61 (61)
45 2da5_A Zinc fingers and homeob 99.4 5.7E-14 2E-18 109.0 4.3 61 234-298 8-68 (75)
46 1x2n_A Homeobox protein pknox1 99.4 3.5E-14 1.2E-18 108.9 2.9 66 231-297 5-70 (73)
47 1b72_A Protein (homeobox prote 99.4 1.9E-14 6.5E-19 116.4 -0.5 62 231-296 32-93 (97)
48 3a02_A Homeobox protein arista 99.4 5.1E-14 1.7E-18 104.3 1.8 57 236-296 2-58 (60)
49 1e3o_C Octamer-binding transcr 99.4 6.1E-14 2.1E-18 122.8 2.6 62 230-295 98-159 (160)
50 2dmp_A Zinc fingers and homeob 99.4 2.6E-13 9E-18 108.8 6.0 59 238-300 18-76 (89)
51 2hi3_A Homeodomain-only protei 99.4 6.3E-14 2.2E-18 107.9 2.1 59 234-296 3-62 (73)
52 1puf_B PRE-B-cell leukemia tra 99.4 6.7E-14 2.3E-18 107.3 1.5 65 233-298 1-65 (73)
53 1uhs_A HOP, homeodomain only p 99.4 6.7E-14 2.3E-18 107.2 1.5 59 234-296 2-61 (72)
54 1au7_A Protein PIT-1, GHF-1; c 99.4 1.3E-13 4.5E-18 119.4 3.3 62 230-295 84-145 (146)
55 1b72_B Protein (PBX1); homeodo 99.4 5.3E-14 1.8E-18 110.9 0.5 64 233-297 1-64 (87)
56 2ecb_A Zinc fingers and homeob 99.4 3.9E-13 1.3E-17 109.3 5.5 59 234-297 13-71 (89)
57 3d1n_I POU domain, class 6, tr 99.4 1.6E-13 5.6E-18 118.7 3.4 61 230-294 90-150 (151)
58 2xsd_C POU domain, class 3, tr 99.4 1.3E-13 4.4E-18 121.8 2.2 65 230-298 96-160 (164)
59 1mnm_C Protein (MAT alpha-2 tr 99.3 2.3E-13 8E-18 107.8 2.8 63 231-294 25-87 (87)
60 3a03_A T-cell leukemia homeobo 99.3 1.3E-13 4.6E-18 101.1 0.3 54 238-295 2-55 (56)
61 2d5v_A Hepatocyte nuclear fact 99.3 4.6E-13 1.6E-17 116.8 3.4 65 230-298 94-158 (164)
62 1le8_B Mating-type protein alp 99.3 4.3E-13 1.5E-17 105.8 2.6 63 233-296 2-64 (83)
63 2da6_A Hepatocyte nuclear fact 99.3 2.1E-13 7.3E-18 113.9 0.9 64 229-296 2-86 (102)
64 1k61_A Mating-type protein alp 99.3 4.1E-13 1.4E-17 99.3 2.1 59 236-295 1-59 (60)
65 1lfb_A Liver transcription fac 99.3 4.7E-13 1.6E-17 110.3 2.2 62 231-296 7-89 (99)
66 3l1p_A POU domain, class 5, tr 99.3 5.8E-13 2E-17 116.3 0.0 61 231-295 94-154 (155)
67 2cqx_A LAG1 longevity assuranc 99.2 1E-12 3.5E-17 102.0 1.1 60 234-297 9-69 (72)
68 2e19_A Transcription factor 8; 99.2 1.5E-11 5E-16 93.7 3.5 56 236-295 6-61 (64)
69 2l9r_A Homeobox protein NKX-3. 99.1 2.6E-11 8.9E-16 94.1 3.2 56 239-298 10-65 (69)
70 3nau_A Zinc fingers and homeob 99.1 1.3E-11 4.3E-16 96.3 0.5 50 241-294 12-61 (66)
71 3k2a_A Homeobox protein MEIS2; 99.0 3.4E-11 1.2E-15 92.0 1.1 59 239-298 4-62 (67)
72 1x2m_A LAG1 longevity assuranc 99.0 5.9E-11 2E-15 91.6 2.2 53 242-297 9-61 (64)
73 1ic8_A Hepatocyte nuclear fact 99.0 4E-11 1.4E-15 109.3 0.4 62 230-295 112-194 (194)
74 2h8r_A Hepatocyte nuclear fact 98.9 3.6E-10 1.2E-14 105.4 3.1 61 229-293 138-219 (221)
75 2da7_A Zinc finger homeobox pr 98.9 3.9E-10 1.3E-14 89.2 1.9 45 242-290 14-58 (71)
76 1mh3_A Maltose binding-A1 home 98.8 7.7E-10 2.6E-14 104.0 1.3 57 233-293 365-421 (421)
77 2lk2_A Homeobox protein TGIF1; 98.4 2.6E-08 8.9E-13 81.5 0.5 58 238-296 10-67 (89)
78 2nzz_A Penetratin conjugated G 97.2 3.5E-05 1.2E-09 54.0 -1.2 20 279-298 1-20 (37)
79 2elh_A CG11849-PA, LD40883P; s 95.0 0.017 5.8E-07 44.9 3.6 47 232-287 15-61 (87)
80 2glo_A Brinker CG9653-PA; prot 93.7 0.03 1E-06 40.5 2.2 46 237-287 3-48 (59)
81 1hlv_A CENP-B, major centromer 93.5 0.022 7.5E-07 46.1 1.3 49 235-290 3-51 (131)
82 2jn6_A Protein CGL2762, transp 91.8 0.066 2.2E-06 41.6 1.9 43 237-287 3-46 (97)
83 2ofy_A Putative XRE-family tra 90.8 0.072 2.4E-06 39.9 1.2 51 236-289 2-52 (86)
84 1jko_C HIN recombinase, DNA-in 90.5 0.077 2.6E-06 35.4 1.0 42 239-289 5-46 (52)
85 1tc3_C Protein (TC3 transposas 90.5 0.14 4.8E-06 33.4 2.2 43 238-289 4-46 (51)
86 2rn7_A IS629 ORFA; helix, all 89.1 0.23 7.9E-06 39.1 2.9 51 237-288 4-54 (108)
87 3bni_A Putative TETR-family tr 86.1 0.11 3.7E-06 44.5 -0.8 53 236-289 36-88 (229)
88 3bdn_A Lambda repressor; repre 84.4 0.22 7.5E-06 43.7 0.4 51 238-289 5-55 (236)
89 1pdn_C Protein (PRD paired); p 83.8 0.61 2.1E-05 36.1 2.7 43 238-289 16-58 (128)
90 1iuf_A Centromere ABP1 protein 83.3 0.65 2.2E-05 39.1 2.8 52 234-289 6-61 (144)
91 2k27_A Paired box protein PAX- 82.4 0.98 3.4E-05 37.6 3.6 43 238-289 24-66 (159)
92 1je8_A Nitrate/nitrite respons 82.0 0.21 7.3E-06 38.2 -0.6 51 236-296 18-68 (82)
93 1k78_A Paired box protein PAX5 81.7 0.78 2.7E-05 37.7 2.6 43 238-289 31-73 (149)
94 1u78_A TC3 transposase, transp 81.0 0.72 2.5E-05 36.7 2.2 43 238-289 5-47 (141)
95 3c57_A Two component transcrip 79.2 0.42 1.4E-05 37.5 0.2 50 238-297 26-75 (95)
96 3kz3_A Repressor protein CI; f 79.0 0.22 7.4E-06 37.0 -1.5 49 240-289 2-50 (80)
97 2qko_A Possible transcriptiona 77.7 0.53 1.8E-05 39.3 0.4 48 242-290 27-74 (215)
98 2ys9_A Homeobox and leucine zi 76.4 0.95 3.2E-05 35.8 1.5 37 246-286 19-55 (70)
99 2ao9_A Phage protein; structur 76.2 0.4 1.4E-05 42.5 -0.8 56 234-290 18-74 (155)
100 4dyq_A Gene 1 protein; GP1, oc 75.9 0.44 1.5E-05 40.3 -0.6 43 237-288 10-53 (140)
101 3q0w_A HTH-type transcriptiona 75.8 0.55 1.9E-05 40.2 -0.0 48 241-289 42-89 (236)
102 2rnj_A Response regulator prot 75.1 0.33 1.1E-05 37.4 -1.4 50 237-296 27-76 (91)
103 1p4w_A RCSB; solution structur 75.1 0.8 2.7E-05 36.8 0.8 48 237-294 32-79 (99)
104 1fse_A GERE; helix-turn-helix 75.1 0.41 1.4E-05 34.5 -0.9 50 236-295 8-57 (74)
105 3cwr_A Transcriptional regulat 74.8 0.55 1.9E-05 38.1 -0.3 47 242-289 16-62 (208)
106 3dcf_A Transcriptional regulat 74.5 0.56 1.9E-05 38.5 -0.3 48 241-289 29-76 (218)
107 2np3_A Putative TETR-family re 74.2 0.84 2.9E-05 38.0 0.7 49 241-290 28-76 (212)
108 3hug_A RNA polymerase sigma fa 74.1 0.22 7.5E-06 38.5 -2.7 47 239-295 37-84 (92)
109 1x3u_A Transcriptional regulat 72.5 0.46 1.6E-05 34.9 -1.2 47 239-295 16-62 (79)
110 2iai_A Putative transcriptiona 71.5 1.9 6.6E-05 36.6 2.3 40 245-289 36-75 (230)
111 2p7v_B Sigma-70, RNA polymeras 70.4 0.84 2.9E-05 33.2 -0.1 53 239-296 5-57 (68)
112 3gzi_A Transcriptional regulat 70.3 0.95 3.3E-05 37.3 0.2 47 242-289 16-62 (218)
113 3mb2_B 4-oxalocrotonate tautom 69.9 7.2 0.00025 31.0 5.1 40 233-289 9-48 (72)
114 1u78_A TC3 transposase, transp 69.5 3 0.0001 33.1 2.9 45 238-290 59-105 (141)
115 1ity_A TRF1; helix-turn-helix, 69.2 6.7 0.00023 29.3 4.6 25 232-256 5-29 (69)
116 1lmb_3 Protein (lambda repress 66.5 3.9 0.00013 30.5 2.8 43 239-289 6-55 (92)
117 3ej9_B Beta-subunit of trans-3 66.1 6.8 0.00023 31.0 4.2 35 241-289 12-46 (70)
118 2r1j_L Repressor protein C2; p 65.8 2.7 9.3E-05 29.1 1.8 36 246-289 8-43 (68)
119 3nrg_A TETR family transcripti 65.8 1.5 5.3E-05 35.9 0.5 49 240-289 10-58 (217)
120 2o8x_A Probable RNA polymerase 65.3 0.52 1.8E-05 33.6 -2.1 48 239-296 15-63 (70)
121 3m20_A 4-oxalocrotonate tautom 65.2 8.7 0.0003 27.6 4.4 35 240-288 10-44 (62)
122 3kz9_A SMCR; transcriptional r 65.0 1.7 5.8E-05 35.1 0.6 47 242-289 16-62 (206)
123 3clo_A Transcriptional regulat 64.5 1.5 5.2E-05 39.5 0.3 50 237-296 195-244 (258)
124 3bru_A Regulatory protein, TET 63.3 1.3 4.6E-05 36.5 -0.3 48 242-290 29-76 (222)
125 1zug_A Phage 434 CRO protein; 63.2 3.2 0.00011 29.0 1.8 37 246-290 6-42 (71)
126 3ulq_B Transcriptional regulat 62.3 1.6 5.3E-05 34.3 -0.1 48 237-294 27-74 (90)
127 2zb9_A Putative transcriptiona 62.3 1.1 3.7E-05 37.2 -1.0 48 242-290 22-69 (214)
128 2oer_A Probable transcriptiona 61.7 1.6 5.6E-05 36.6 -0.0 56 233-289 14-69 (214)
129 3mzy_A RNA polymerase sigma-H 61.5 0.56 1.9E-05 37.6 -2.9 47 239-295 109-155 (164)
130 3him_A Probable transcriptiona 61.2 2.2 7.4E-05 34.6 0.6 46 243-289 16-61 (211)
131 3g1o_A Transcriptional regulat 60.3 2 6.8E-05 37.1 0.2 48 241-289 41-88 (255)
132 1r69_A Repressor protein CI; g 60.1 4 0.00014 28.4 1.8 37 246-290 4-40 (69)
133 2guh_A Putative TETR-family tr 60.1 1.4 4.9E-05 37.5 -0.7 48 242-290 38-85 (214)
134 3m21_A Probable tautomerase HP 59.9 12 0.00042 27.1 4.4 36 239-288 13-48 (67)
135 3f1b_A TETR-like transcription 59.7 1.5 5.1E-05 35.5 -0.6 47 242-289 13-59 (203)
136 3qqa_A CMER; alpha-helical, he 59.6 1.7 5.7E-05 35.7 -0.4 47 242-289 18-64 (216)
137 1adr_A P22 C2 repressor; trans 59.5 4.1 0.00014 28.9 1.8 36 246-289 8-43 (76)
138 2rgt_A Fusion of LIM/homeobox 59.2 0.1 3.4E-06 44.9 -8.1 26 231-256 134-159 (169)
139 3ccy_A Putative TETR-family tr 59.0 2.8 9.7E-05 34.5 1.0 46 243-289 14-59 (203)
140 3g7r_A Putative transcriptiona 58.9 1.9 6.4E-05 36.4 -0.2 47 242-289 34-80 (221)
141 3i5g_B Myosin regulatory light 58.8 17 0.00059 29.8 5.7 43 236-278 6-49 (153)
142 3mvp_A TETR/ACRR transcription 58.5 1.5 5E-05 35.9 -0.9 47 241-288 24-70 (217)
143 1pb6_A Hypothetical transcript 57.4 1.6 5.4E-05 35.7 -0.9 47 242-289 17-63 (212)
144 1tty_A Sigma-A, RNA polymerase 57.2 1.5 5.2E-05 33.5 -0.9 53 239-296 18-70 (87)
145 2hku_A A putative transcriptio 57.0 1.3 4.3E-05 37.0 -1.5 46 242-289 19-64 (215)
146 3on2_A Probable transcriptiona 56.1 2.6 9E-05 33.8 0.3 28 262-289 30-57 (199)
147 2q0o_A Probable transcriptiona 55.4 2 6.8E-05 38.0 -0.6 48 237-294 173-220 (236)
148 3abf_A 4-oxalocrotonate tautom 55.4 18 0.0006 25.4 4.5 36 240-289 12-47 (64)
149 1gyx_A YDCE, B1461, hypothetic 55.3 15 0.0005 27.4 4.3 37 239-289 11-47 (76)
150 2k9q_A Uncharacterized protein 55.0 5.3 0.00018 29.0 1.8 34 247-288 6-39 (77)
151 3b7h_A Prophage LP1 protein 11 54.9 5.5 0.00019 28.4 1.8 37 245-289 9-45 (78)
152 3c07_A Putative TETR-family tr 54.8 1.9 6.4E-05 38.6 -0.9 48 242-290 40-87 (273)
153 1y7y_A C.AHDI; helix-turn-heli 54.4 5.8 0.0002 27.9 1.8 22 267-288 29-50 (74)
154 2x48_A CAG38821; archeal virus 52.7 5 0.00017 27.6 1.2 39 239-286 13-53 (55)
155 3bs3_A Putative DNA-binding pr 52.2 3.3 0.00011 29.5 0.2 20 268-287 27-46 (76)
156 2qib_A TETR-family transcripti 52.2 2.4 8.3E-05 36.1 -0.6 48 242-290 12-59 (231)
157 1ku3_A Sigma factor SIGA; heli 51.4 1.7 5.9E-05 31.9 -1.4 51 238-293 9-59 (73)
158 1s7o_A Hypothetical UPF0122 pr 50.7 1.4 4.9E-05 36.0 -2.1 47 238-294 21-68 (113)
159 2k27_A Paired box protein PAX- 50.4 24 0.00082 29.1 5.3 52 236-291 80-138 (159)
160 2iu5_A DHAS, YCEG, HTH-type dh 50.4 5.5 0.00019 32.6 1.3 48 242-290 12-59 (195)
161 3lwj_A Putative TETR-family tr 50.3 2.4 8.4E-05 34.4 -0.8 46 242-288 11-56 (202)
162 2ef8_A C.ECOT38IS, putative tr 50.1 7.3 0.00025 28.2 1.8 36 246-289 13-48 (84)
163 1l3l_A Transcriptional activat 49.9 2.4 8.4E-05 37.4 -0.9 49 236-294 170-218 (234)
164 1l0o_C Sigma factor; bergerat 49.6 3.5 0.00012 34.9 0.0 46 239-293 198-243 (243)
165 2xi8_A Putative transcription 49.5 3.6 0.00012 28.3 0.1 21 268-288 18-38 (66)
166 2hxo_A Putative TETR-family tr 49.2 9 0.00031 33.6 2.6 53 232-289 8-61 (237)
167 2rae_A Transcriptional regulat 48.8 2.7 9.2E-05 34.4 -0.8 31 262-292 35-65 (207)
168 2fq4_A Transcriptional regulat 48.2 3.9 0.00013 33.5 0.1 49 242-291 11-59 (192)
169 2qtq_A Transcriptional regulat 48.1 2.6 9E-05 34.3 -1.0 27 263-289 35-61 (213)
170 3kkd_A Transcriptional regulat 47.9 3.8 0.00013 34.7 -0.0 47 242-289 34-80 (237)
171 2a6c_A Helix-turn-helix motif; 47.7 7.1 0.00024 29.1 1.5 21 268-288 35-55 (83)
172 2zcx_A SCO7815, TETR-family tr 47.5 3.8 0.00013 35.3 -0.1 47 242-289 22-68 (231)
173 2kpj_A SOS-response transcript 47.5 3.4 0.00012 31.4 -0.4 23 267-289 25-47 (94)
174 3mb2_A 4-oxalocrotonate tautom 47.3 26 0.00091 25.7 4.6 35 240-288 12-46 (72)
175 2v57_A TETR family transcripti 47.2 4.1 0.00014 32.8 0.0 44 243-289 14-57 (190)
176 3mnl_A KSTR, transcriptional r 47.2 1.1 3.6E-05 36.5 -3.5 47 242-289 19-65 (203)
177 1otf_A 4-oxalocrotonate tautom 46.2 26 0.00088 24.2 4.2 35 241-289 12-46 (62)
178 3rd3_A Probable transcriptiona 46.1 2.8 9.7E-05 33.6 -1.1 48 242-290 9-56 (197)
179 2ict_A Antitoxin HIGA; helix-t 46.1 8.4 0.00029 29.0 1.7 20 268-287 25-44 (94)
180 3kkc_A TETR family transcripti 46.0 9.3 0.00032 30.3 2.0 47 242-289 11-57 (177)
181 1xsv_A Hypothetical UPF0122 pr 45.9 1.4 4.8E-05 35.9 -2.9 49 238-295 24-72 (113)
182 1qgp_A Protein (double strande 45.8 4.3 0.00015 31.2 -0.0 46 239-288 10-55 (77)
183 2np5_A Transcriptional regulat 45.6 4.6 0.00016 33.5 0.1 28 262-289 27-54 (203)
184 2lv7_A Calcium-binding protein 45.1 71 0.0024 24.7 7.0 53 233-285 23-78 (100)
185 3knw_A Putative transcriptiona 45.1 4.1 0.00014 33.2 -0.2 47 242-289 13-59 (212)
186 3nxc_A HTH-type protein SLMA; 45.0 5.1 0.00017 32.6 0.3 28 262-289 43-70 (212)
187 2opa_A Probable tautomerase YW 44.9 28 0.00096 24.0 4.2 35 241-289 12-46 (61)
188 3lsj_A DEST; transcriptional r 44.6 5.5 0.00019 32.9 0.5 48 242-289 10-57 (220)
189 3aqt_A Bacterial regulatory pr 44.5 3.3 0.00011 35.7 -0.9 47 243-290 46-92 (245)
190 3s5r_A Transcriptional regulat 44.2 2.1 7.1E-05 35.1 -2.2 28 262-289 28-55 (216)
191 4fcy_A Transposase; rnaseh, DD 44.1 11 0.00037 37.0 2.6 45 239-287 22-75 (529)
192 2b5a_A C.BCLI; helix-turn-heli 44.0 8.3 0.00029 27.4 1.3 23 267-289 26-48 (77)
193 2g7l_A TETR-family transcripti 43.9 8.5 0.00029 34.1 1.6 52 234-290 13-65 (243)
194 1k78_A Paired box protein PAX5 43.9 19 0.00066 29.2 3.6 52 235-290 86-144 (149)
195 3vp5_A Transcriptional regulat 43.6 4 0.00014 33.7 -0.5 48 240-288 9-56 (189)
196 3ry0_A Putative tautomerase; o 43.3 31 0.0011 24.6 4.3 35 240-288 11-45 (65)
197 3c2b_A Transcriptional regulat 43.3 2.9 9.8E-05 34.6 -1.5 47 243-290 15-61 (221)
198 2q24_A Putative TETR family tr 43.3 3 0.0001 34.1 -1.3 27 261-289 33-59 (194)
199 2jpc_A SSRB; DNA binding prote 43.2 2 6.8E-05 30.0 -2.1 43 243-295 2-44 (61)
200 3ej9_A Alpha-subunit of trans- 42.9 30 0.001 26.0 4.3 35 240-288 12-46 (76)
201 3he0_A Transcriptional regulat 42.9 7 0.00024 31.4 0.8 40 246-290 18-57 (196)
202 2ba3_A NIKA; dimer, bacterial 42.2 12 0.0004 26.2 1.8 25 232-256 14-38 (51)
203 3omt_A Uncharacterized protein 41.8 5.9 0.0002 28.4 0.2 17 262-278 48-64 (73)
204 3dew_A Transcriptional regulat 41.8 2.6 8.7E-05 33.9 -2.0 28 262-289 26-53 (206)
205 1fex_A TRF2-interacting telome 41.7 30 0.001 25.6 4.0 47 237-284 2-49 (59)
206 3loc_A HTH-type transcriptiona 41.6 1.4 4.7E-05 35.9 -3.6 46 242-288 17-62 (212)
207 1umq_A Photosynthetic apparatu 41.2 11 0.00039 29.6 1.8 36 243-286 41-76 (81)
208 2l49_A C protein; P2 bacteriop 41.1 13 0.00043 28.0 2.0 36 246-289 7-42 (99)
209 1j9i_A GPNU1 DBD;, terminase s 40.8 7.4 0.00025 28.5 0.6 22 267-288 5-26 (68)
210 3qp6_A CVIR transcriptional re 40.6 8.7 0.0003 35.1 1.2 50 236-295 194-243 (265)
211 2dg8_A Putative TETR-family tr 40.6 4.2 0.00014 33.2 -0.9 27 263-289 28-54 (193)
212 3e7l_A Transcriptional regulat 40.3 13 0.00043 27.0 1.8 35 244-286 20-54 (63)
213 3v6g_A Probable transcriptiona 40.2 3.4 0.00012 35.1 -1.5 43 245-288 16-58 (208)
214 3fiw_A Putative TETR-family tr 39.8 11 0.00036 32.5 1.5 54 232-290 17-71 (211)
215 2dim_A Cell division cycle 5-l 39.6 27 0.00092 25.9 3.6 23 234-256 6-28 (70)
216 3egq_A TETR family transcripti 39.5 7.3 0.00025 30.9 0.4 46 243-289 4-49 (170)
217 3fia_A Intersectin-1; EH 1 dom 39.3 12 0.00042 31.5 1.8 46 239-284 26-72 (121)
218 2lhi_A Calmodulin, serine/thre 39.2 20 0.00069 30.0 3.1 42 237-278 2-44 (176)
219 3lhq_A Acrab operon repressor 39.0 5.7 0.0002 32.2 -0.3 47 242-289 13-59 (220)
220 3ppb_A Putative TETR family tr 39.0 4.3 0.00015 32.4 -1.0 28 263-290 28-55 (195)
221 2wiu_B HTH-type transcriptiona 38.8 13 0.00045 27.1 1.7 36 246-289 15-50 (88)
222 3qbm_A TETR transcriptional re 38.7 6 0.00021 31.7 -0.2 47 242-289 6-52 (199)
223 3c3w_A Two component transcrip 37.9 7.4 0.00025 33.3 0.2 48 238-295 148-195 (225)
224 3qrx_A Centrin; calcium-bindin 37.8 41 0.0014 26.5 4.6 45 233-277 15-60 (169)
225 2rek_A Putative TETR-family tr 37.5 3.4 0.00012 33.8 -1.9 43 245-289 18-60 (199)
226 2oi8_A Putative regulatory pro 37.4 6.6 0.00023 33.5 -0.2 48 242-290 15-62 (216)
227 3t76_A VANU, transcriptional r 36.8 15 0.00051 28.6 1.8 19 269-287 42-60 (88)
228 2fnf_X Putative RAS effector N 36.8 15 0.0005 28.1 1.7 28 90-125 38-67 (72)
229 3fwb_A Cell division control p 36.7 59 0.002 25.1 5.3 45 233-277 10-55 (161)
230 1or7_A Sigma-24, RNA polymeras 36.6 2.1 7.2E-05 35.6 -3.3 47 239-295 140-187 (194)
231 1uiz_A MIF, macrophage migrati 36.5 45 0.0016 26.2 4.7 36 240-289 68-103 (115)
232 3f0c_A TETR-molecule A, transc 36.3 3.7 0.00013 33.7 -1.8 44 245-289 13-56 (216)
233 2cob_A LCOR protein; MLR2, KIA 36.3 10 0.00036 29.8 0.8 56 233-296 6-62 (70)
234 2ras_A Transcriptional regulat 36.3 6.4 0.00022 32.4 -0.4 47 243-290 11-57 (212)
235 3col_A Putative transcription 36.1 4.1 0.00014 32.5 -1.6 47 243-290 10-56 (196)
236 2of7_A Putative TETR-family tr 35.9 3.6 0.00012 35.8 -2.1 51 242-293 47-97 (260)
237 1hfo_A Migration inhibitory fa 35.9 47 0.0016 26.0 4.7 36 240-289 67-102 (113)
238 3b81_A Transcriptional regulat 35.7 6.4 0.00022 31.8 -0.5 48 242-290 10-57 (203)
239 1ntc_A Protein (nitrogen regul 35.7 15 0.00051 28.6 1.6 36 243-286 51-86 (91)
240 2o7t_A Transcriptional regulat 35.7 7.2 0.00025 31.9 -0.2 46 243-289 8-53 (199)
241 3o39_A Periplasmic protein rel 35.6 20 0.00068 29.8 2.5 17 238-254 89-105 (108)
242 1x41_A Transcriptional adaptor 35.6 33 0.0011 24.8 3.4 23 234-256 5-27 (60)
243 2id3_A Putative transcriptiona 35.2 3.2 0.00011 35.2 -2.5 48 242-290 39-86 (225)
244 3hta_A EBRA repressor; TETR fa 35.0 8.7 0.0003 32.4 0.2 45 244-289 29-73 (217)
245 1dj7_A Ferredoxin thioredoxin 35.0 47 0.0016 28.3 4.7 33 241-274 7-43 (117)
246 3e7q_A Transcriptional regulat 34.9 1.1 3.9E-05 36.4 -5.1 47 242-289 13-59 (215)
247 1nee_A EIF-2-beta, probable tr 34.9 10 0.00035 32.9 0.6 14 108-121 122-135 (138)
248 3vk0_A NHTF, transcriptional r 34.8 14 0.00049 29.0 1.4 21 268-288 38-58 (114)
249 2cki_A Ulilysin; metalloprotea 34.4 21 0.0007 33.5 2.7 18 236-253 237-254 (262)
250 3f6w_A XRE-family like protein 34.4 14 0.00048 26.8 1.2 21 268-288 31-51 (83)
251 3klo_A Transcriptional regulat 34.4 10 0.00035 32.2 0.6 48 238-295 158-205 (225)
252 2os5_A Acemif; macrophage migr 34.3 52 0.0018 26.2 4.7 36 240-289 68-103 (119)
253 2g7s_A Transcriptional regulat 34.0 6.3 0.00022 31.4 -0.8 46 243-289 8-53 (194)
254 3vib_A MTRR; helix-turn-helix 34.0 8.4 0.00029 31.8 -0.1 47 243-290 10-56 (210)
255 3b64_A Macrophage migration in 33.9 40 0.0014 26.5 3.9 38 241-293 69-106 (112)
256 3s8q_A R-M controller protein; 33.9 15 0.00052 26.6 1.4 21 268-288 28-48 (82)
257 3sjm_A Telomeric repeat-bindin 33.7 32 0.0011 25.6 3.1 23 234-256 8-30 (64)
258 1w0t_A Telomeric repeat bindin 33.4 53 0.0018 23.0 4.1 20 237-256 2-21 (53)
259 3szt_A QCSR, quorum-sensing co 33.4 8.9 0.0003 34.2 -0.0 48 237-294 173-220 (237)
260 3geu_A Intercellular adhesion 33.3 4.5 0.00015 32.7 -1.8 47 242-289 2-48 (189)
261 3qkx_A Uncharacterized HTH-typ 33.2 11 0.00036 30.0 0.4 46 243-289 8-53 (188)
262 3frq_A Repressor protein MPHR( 33.0 3.7 0.00013 33.4 -2.4 27 263-289 27-53 (195)
263 2qwt_A Transcriptional regulat 32.9 9.9 0.00034 31.3 0.2 44 244-289 14-57 (196)
264 1a04_A Nitrate/nitrite respons 32.8 7.5 0.00026 32.5 -0.6 47 238-294 153-199 (215)
265 4ich_A Transcriptional regulat 32.7 7.8 0.00027 34.9 -0.5 52 238-290 115-166 (311)
266 1k81_A EIF-2-beta, probable tr 32.6 9.6 0.00033 26.0 0.1 13 108-120 20-32 (36)
267 2x4k_A 4-oxalocrotonate tautom 32.3 67 0.0023 21.8 4.5 35 240-288 14-48 (63)
268 1pdn_C Protein (PRD paired); p 32.1 18 0.0006 27.7 1.5 43 237-287 73-126 (128)
269 3lay_A Zinc resistance-associa 32.0 53 0.0018 29.3 4.8 47 237-283 65-131 (175)
270 2lfw_A PHYR sigma-like domain; 31.9 1.9 6.6E-05 35.8 -4.3 50 238-296 92-141 (157)
271 1rp3_A RNA polymerase sigma fa 31.8 3.5 0.00012 35.0 -2.8 48 238-294 186-233 (239)
272 1j7q_A CAVP, calcium vector pr 31.8 71 0.0024 22.7 4.7 42 236-277 4-46 (86)
273 3i5g_C Myosin catalytic light 31.6 32 0.0011 28.3 3.1 41 238-278 1-44 (159)
274 1c07_A Protein (epidermal grow 31.5 16 0.00053 27.9 1.1 47 240-286 4-51 (95)
275 3cw2_K Translation initiation 31.4 11 0.00037 32.8 0.2 13 108-120 123-135 (139)
276 1p2x_A RNG2 protein, RAS GTPas 30.9 37 0.0013 29.4 3.5 23 239-261 133-155 (159)
277 2pmy_A RAS and EF-hand domain- 30.8 11 0.00039 27.9 0.2 53 234-286 15-68 (91)
278 1g3n_C V-cyclin; cyclin-depend 30.8 77 0.0026 28.5 5.8 42 239-280 125-168 (257)
279 3pas_A TETR family transcripti 30.7 4.4 0.00015 32.3 -2.2 46 243-289 8-53 (195)
280 2ewt_A BLDD, putative DNA-bind 30.6 21 0.00072 24.9 1.6 21 268-288 25-47 (71)
281 2pz9_A Putative regulatory pro 30.4 2.5 8.5E-05 35.8 -4.0 28 263-290 49-76 (226)
282 3gj5_B Nuclear pore complex pr 30.4 17 0.00059 24.8 1.0 10 107-116 19-28 (34)
283 3mf7_A CIS-3-chloroacrylic aci 30.1 45 0.0015 28.6 3.9 37 238-288 10-46 (149)
284 4aci_A HTH-type transcriptiona 29.9 3.2 0.00011 33.5 -3.3 27 263-289 33-59 (191)
285 2xcz_A Possible ATLS1-like lig 29.9 50 0.0017 26.0 3.9 36 240-289 68-103 (115)
286 3fmy_A HTH-type transcriptiona 29.8 31 0.0011 25.0 2.5 41 238-289 9-49 (73)
287 3anp_C Transcriptional repress 29.6 11 0.00036 31.0 -0.1 45 244-289 10-54 (204)
288 1fi6_A EH domain protein REPS1 29.5 16 0.00054 27.6 0.8 48 239-286 2-50 (92)
289 3lsg_A Two-component response 29.5 15 0.0005 28.2 0.7 39 244-287 3-42 (103)
290 2d74_B Translation initiation 29.4 15 0.0005 32.4 0.7 13 108-120 124-136 (148)
291 1g2h_A Transcriptional regulat 29.4 33 0.0011 24.8 2.5 39 239-286 17-55 (61)
292 1hlv_A CENP-B, major centromer 29.3 1.1E+02 0.0038 24.0 5.9 59 232-290 65-128 (131)
293 2yve_A Transcriptional regulat 29.3 10 0.00036 30.9 -0.3 27 263-289 23-49 (185)
294 2aje_A Telomere repeat-binding 29.3 44 0.0015 27.7 3.5 26 231-256 7-32 (105)
295 1t8t_A Heparan sulfate D-gluco 29.2 83 0.0028 27.7 5.6 35 233-278 233-267 (271)
296 2wui_A MEXZ, transcriptional r 29.1 12 0.0004 31.1 0.0 47 242-289 10-56 (210)
297 1rfh_A RAS association (ralgds 29.0 17 0.00056 26.6 0.8 24 90-121 25-50 (59)
298 2k9i_A Plasmid PRN1, complete 28.8 51 0.0017 22.5 3.3 24 233-256 9-32 (55)
299 3kyd_D Small ubiquitin-related 28.8 37 0.0013 28.5 3.0 26 266-291 66-91 (115)
300 1zk8_A Transcriptional regulat 28.8 7.8 0.00027 31.1 -1.1 28 262-289 26-53 (183)
301 2g2k_A EIF-5, eukaryotic trans 28.8 15 0.0005 33.1 0.6 15 108-122 118-132 (170)
302 3uj3_X DNA-invertase; helix-tu 28.5 12 0.00041 32.2 0.0 43 239-290 142-184 (193)
303 2d9a_A B-MYB, MYB-related prot 28.5 64 0.0022 23.0 3.9 23 234-256 5-27 (60)
304 1mww_A Hypothetical protein HI 28.4 66 0.0023 25.8 4.4 35 241-289 71-105 (128)
305 1wdc_C Scallop myosin; calcium 28.4 38 0.0013 26.3 2.9 41 238-278 1-44 (156)
306 1yio_A Response regulatory pro 28.0 11 0.00038 31.2 -0.3 47 239-295 142-188 (208)
307 2cpg_A REPA protein, transcrip 28.0 24 0.00083 23.4 1.5 24 233-256 2-25 (45)
308 1jhf_A LEXA repressor; LEXA SO 28.0 32 0.0011 29.5 2.6 42 239-286 3-48 (202)
309 3ox6_A Calcium-binding protein 27.8 1.2E+02 0.0041 22.9 5.6 40 238-277 3-43 (153)
310 2w96_A G1/S-specific cyclin-D1 27.7 77 0.0026 28.8 5.2 42 239-280 131-174 (271)
311 1x57_A Endothelial differentia 27.7 23 0.00079 26.3 1.5 19 262-280 53-71 (91)
312 2e9h_A EIF-5, eukaryotic trans 27.7 15 0.0005 32.7 0.4 15 108-122 125-139 (157)
313 2dg7_A Putative transcriptiona 27.1 15 0.00051 29.8 0.3 31 262-292 25-55 (195)
314 1sgm_A Putative HTH-type trans 27.1 25 0.00085 27.9 1.6 26 262-287 24-49 (191)
315 2ovk_B RLC, myosin regulatory 27.0 67 0.0023 24.9 4.1 43 235-277 5-48 (153)
316 3gj3_B Nuclear pore complex pr 26.9 21 0.00073 24.1 1.0 10 107-116 19-28 (33)
317 3qq6_A HTH-type transcriptiona 26.8 24 0.00081 26.0 1.4 47 233-279 17-68 (78)
318 1wm3_A Ubiquitin-like protein 26.8 40 0.0014 24.9 2.6 27 265-291 26-52 (72)
319 2i10_A Putative TETR transcrip 26.8 22 0.00076 29.4 1.3 28 263-290 30-57 (202)
320 2ktg_A Calmodulin, putative; e 26.4 63 0.0022 22.8 3.6 42 236-277 4-46 (85)
321 3cec_A Putative antidote prote 26.4 28 0.00096 26.6 1.8 20 268-287 35-54 (104)
322 2hxi_A Putative transcriptiona 26.3 9 0.00031 33.8 -1.2 52 234-289 23-74 (241)
323 2gwr_A DNA-binding response re 26.0 17 0.00058 31.1 0.5 52 238-295 152-208 (238)
324 2jrt_A Uncharacterized protein 26.0 21 0.00072 28.8 1.0 44 236-287 29-72 (95)
325 4fqn_A Malcavernin; helical do 25.7 69 0.0024 26.7 4.0 33 236-274 25-57 (98)
326 4hku_A LMO2814 protein, TETR t 25.6 14 0.00049 30.0 -0.0 27 263-289 26-52 (178)
327 2q1z_A RPOE, ECF SIGE; ECF sig 25.6 1.4 4.8E-05 36.4 -6.2 46 239-294 135-181 (184)
328 1b0n_A Protein (SINR protein); 25.3 25 0.00086 26.7 1.3 20 268-287 18-37 (111)
329 3a4r_A Nfatc2-interacting prot 25.2 47 0.0016 25.2 2.8 25 266-290 34-58 (79)
330 2g7g_A RHA04620, putative tran 25.1 20 0.00069 30.6 0.8 46 238-290 9-55 (213)
331 1p2f_A Response regulator; DRR 25.1 16 0.00054 30.6 0.1 52 238-295 144-198 (220)
332 2aal_A Malonate semialdehyde d 24.9 87 0.003 25.3 4.6 36 240-289 76-111 (131)
333 2lci_A Protein OR36; structura 24.9 65 0.0022 27.3 3.8 36 242-277 61-100 (134)
334 2xdn_A HTH-type transcriptiona 24.9 21 0.0007 29.4 0.8 47 243-290 11-57 (210)
335 1irz_A ARR10-B; helix-turn-hel 24.7 25 0.00086 27.0 1.2 59 233-293 3-61 (64)
336 2enz_A NPKC-theta, protein kin 24.6 38 0.0013 24.8 2.1 31 90-125 26-58 (65)
337 3bjb_A Probable transcriptiona 24.5 10 0.00036 31.6 -1.1 47 243-290 22-68 (207)
338 2mys_C Myosin; muscle protein, 24.5 1.4E+02 0.0048 22.5 5.5 39 239-277 1-40 (149)
339 3lfp_A CSP231I C protein; tran 24.5 23 0.00079 26.9 0.9 20 268-287 18-41 (98)
340 3g5g_A Regulatory protein; tra 24.4 27 0.00091 27.2 1.3 20 268-287 45-64 (99)
341 3hsq_A Acyl-[acyl-carrier-prot 24.3 36 0.0012 30.4 2.3 37 238-275 200-236 (259)
342 2wkb_A Macrophage migration in 24.3 49 0.0017 26.7 2.9 35 241-289 69-103 (125)
343 3npi_A TETR family regulatory 24.2 12 0.0004 32.1 -0.9 28 263-290 37-64 (251)
344 2ebv_A Nuclear pore complex pr 24.2 37 0.0013 25.6 2.0 21 92-117 33-53 (57)
345 3bd1_A CRO protein; transcript 24.1 13 0.00046 27.1 -0.5 24 266-289 13-36 (79)
346 2ppx_A AGR_C_3184P, uncharacte 24.0 25 0.00085 26.9 1.1 20 268-287 47-66 (99)
347 2w53_A Repressor, SMet; antibi 23.9 13 0.00043 30.9 -0.7 29 262-290 29-57 (219)
348 3bd9_A Heparan sulfate glucosa 23.8 1E+02 0.0035 27.6 5.3 35 233-278 243-277 (280)
349 2hyj_A Putative TETR-family tr 23.7 12 0.0004 31.0 -1.0 47 242-289 11-57 (200)
350 3itf_A Periplasmic adaptor pro 23.6 41 0.0014 29.2 2.5 15 240-254 119-133 (145)
351 3rh2_A Hypothetical TETR-like 23.6 10 0.00035 31.2 -1.3 28 262-289 21-48 (212)
352 1vi0_A Transcriptional regulat 23.4 9.5 0.00032 31.8 -1.6 28 262-289 26-53 (206)
353 2cho_A Glucosaminidase, hexosa 23.0 83 0.0028 33.6 5.1 43 235-277 136-201 (716)
354 2eqr_A N-COR1, N-COR, nuclear 23.0 2.1E+02 0.0073 20.6 6.0 26 231-256 6-31 (61)
355 3t72_q RNA polymerase sigma fa 22.9 10 0.00035 30.5 -1.4 52 239-295 19-70 (99)
356 2f2c_A Cyclin homolog, V-cycli 22.9 83 0.0028 28.3 4.4 42 239-280 126-169 (254)
357 2fd5_A Transcriptional regulat 22.9 31 0.001 27.5 1.4 46 243-289 7-52 (180)
358 3vpr_A Transcriptional regulat 22.8 14 0.0005 29.8 -0.6 28 263-290 22-49 (190)
359 3f52_A CLP gene regulator (CLG 22.7 29 0.00098 27.0 1.2 21 268-288 45-65 (117)
360 2elk_A SPCC24B10.08C protein; 22.7 81 0.0028 22.7 3.5 36 236-278 8-43 (58)
361 2jxx_A Nfatc2-interacting prot 22.7 53 0.0018 26.6 2.8 23 268-290 54-76 (97)
362 3cdl_A Transcriptional regulat 22.7 22 0.00075 29.2 0.5 48 242-290 8-55 (203)
363 1t33_A Putative transcriptiona 22.6 8.7 0.0003 31.7 -2.0 26 265-290 32-57 (224)
364 2cu7_A KIAA1915 protein; nucle 22.6 97 0.0033 23.0 4.1 23 234-256 6-28 (72)
365 3zxw_B Ribulose bisphosphate c 22.5 48 0.0016 28.3 2.6 27 233-259 7-38 (118)
366 3bqz_B HTH-type transcriptiona 22.5 22 0.00074 28.4 0.4 40 245-289 8-47 (194)
367 3ljl_A Transcriptional regulat 22.5 8.2 0.00028 31.0 -2.1 48 242-290 13-60 (156)
368 1faq_A RAF-1; transferase, ser 22.4 39 0.0013 23.4 1.7 26 90-124 17-44 (52)
369 3eup_A Transcriptional regulat 22.4 9.1 0.00031 30.8 -1.8 47 242-289 10-56 (204)
370 1dtl_A Cardiac troponin C; hel 22.4 1.4E+02 0.0048 23.0 5.2 52 234-285 6-61 (161)
371 3hot_A Transposable element ma 22.3 45 0.0015 30.3 2.6 45 241-289 7-54 (345)
372 2jnf_A Troponin C; stretch act 22.2 1.2E+02 0.0039 23.5 4.7 40 238-277 5-46 (158)
373 2dgz_A Werner syndrome protein 22.2 1.3E+02 0.0045 24.7 5.2 36 238-281 11-46 (113)
374 3jsj_A Putative TETR-family tr 22.2 14 0.00048 29.7 -0.7 26 265-290 29-54 (190)
375 3j04_B Myosin regulatory light 22.1 1.1E+02 0.0039 23.1 4.5 38 240-277 1-39 (143)
376 2d07_B Ubiquitin-like protein 22.1 59 0.002 25.5 2.9 25 267-291 44-68 (93)
377 2ovk_C Myosin catalytic light 21.9 77 0.0026 24.7 3.6 41 238-278 1-44 (159)
378 1w98_B Cyclin E, G1/S-specific 21.9 1.5E+02 0.0051 27.2 6.0 41 239-279 125-167 (283)
379 3u0k_A Rcamp; fluorescent prot 21.9 71 0.0024 32.5 4.1 43 236-278 292-335 (440)
380 3op9_A PLI0006 protein; struct 21.7 23 0.00079 27.5 0.4 19 269-287 27-45 (114)
381 3on4_A Transcriptional regulat 21.6 12 0.0004 29.8 -1.3 28 262-289 28-55 (191)
382 2d6y_A Putative TETR family re 21.6 13 0.00043 30.9 -1.2 28 262-289 26-53 (202)
383 1iq3_A Ralbp1-interacting prot 21.5 22 0.00075 28.3 0.3 51 236-286 12-63 (110)
384 4e6u_A Acyl-[acyl-carrier-prot 21.4 72 0.0024 28.5 3.7 41 237-278 206-247 (265)
385 3o39_A Periplasmic protein rel 21.4 1.4E+02 0.0047 24.6 5.1 21 239-259 17-37 (108)
386 2hyt_A TETR-family transcripti 21.4 27 0.00093 28.5 0.9 46 243-289 12-57 (197)
387 3ivp_A Putative transposon-rel 21.4 32 0.0011 27.2 1.2 21 268-288 29-49 (126)
388 2ibd_A Possible transcriptiona 21.3 20 0.00069 29.4 0.0 47 243-290 14-60 (204)
389 3rjz_A N-type ATP pyrophosphat 21.1 56 0.0019 30.2 2.9 45 239-284 99-148 (237)
390 1avs_A Troponin C; muscle cont 21.0 41 0.0014 24.3 1.7 45 233-277 7-52 (90)
391 2bnm_A Epoxidase; oxidoreducta 20.7 41 0.0014 28.3 1.8 44 235-280 19-69 (198)
392 2opt_A Actii protein; helical 20.7 31 0.0011 30.4 1.1 49 237-290 3-52 (234)
393 3mkl_A HTH-type transcriptiona 20.7 14 0.00049 29.2 -1.0 40 242-286 6-45 (120)
394 2roh_A RTBP1, telomere binding 20.6 1.2E+02 0.0039 25.8 4.6 25 232-256 26-50 (122)
395 1guu_A C-MYB, MYB proto-oncoge 20.6 78 0.0027 21.8 3.0 20 237-256 3-22 (52)
396 2hin_A GP39, repressor protein 20.5 19 0.00065 27.6 -0.3 21 267-287 13-33 (71)
397 1f5q_B Gamma herpesvirus cycli 20.5 1.6E+02 0.0054 27.0 5.8 41 239-279 123-165 (252)
398 2y2z_A SIM16, SIMR, putative r 20.3 35 0.0012 30.7 1.4 47 239-290 26-73 (267)
399 3nnr_A Transcriptional regulat 20.2 10 0.00034 31.7 -2.1 28 262-289 23-50 (228)
400 1qbj_A Protein (double-strande 20.2 26 0.00088 27.3 0.4 43 241-287 8-50 (81)
No 1
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.85 E-value=4.4e-22 Score=158.13 Aligned_cols=66 Identities=61% Similarity=1.041 Sum_probs=63.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCC
Q 016972 229 SSGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAK 294 (379)
Q Consensus 229 ~s~~kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k 294 (379)
...++||.||+||.+|+++|++|++++||+.+|+|..++++||.+|||++.+|||||||+|+|+++
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 13 SGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCCSSCCCCCCCHHHHHHHHHHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 456789999999999999999999999999999999999999999999999999999999999976
No 2
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.85 E-value=7.5e-22 Score=156.19 Aligned_cols=66 Identities=53% Similarity=1.015 Sum_probs=63.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCC
Q 016972 229 SSGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAK 294 (379)
Q Consensus 229 ~s~~kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k 294 (379)
...++||.||+||.+|++.|+.+|+++|||.+|++..++++||.+|||++.+|||||||+|+|+++
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 13 GGGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 345789999999999999999999999999999999999999999999999999999999999976
No 3
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=3e-18 Score=133.86 Aligned_cols=68 Identities=16% Similarity=0.296 Sum_probs=63.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCC
Q 016972 229 SSGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRD 296 (379)
Q Consensus 229 ~s~~kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~ 296 (379)
...++||.||.||.+|++.|+.+|++.+|..+|++..++++||.++||++.+|||||||+|++++|..
T Consensus 4 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 4 GSSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 34568999999999999999999999999999999999999999999999999999999999998754
No 4
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=1.4e-17 Score=131.56 Aligned_cols=62 Identities=19% Similarity=0.313 Sum_probs=57.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCC
Q 016972 229 SSGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFA 293 (379)
Q Consensus 229 ~s~~kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~ 293 (379)
+.+.+||.||.||.||+.+|+.||+.++ .|||++++++|+.++||+++||||||||+|.-.+
T Consensus 3 ~~~~~kR~RT~~s~eQL~~Lqs~f~~~~---~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 3 SGSSGPRSRTKISLEALGILQSFIHDVG---LYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCCCCSHHHHHHHHHHHHHC---SCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 3457899999999999999999999955 6999999999999999999999999999998664
No 5
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=9e-18 Score=130.71 Aligned_cols=65 Identities=25% Similarity=0.480 Sum_probs=59.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCCC
Q 016972 230 SGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRDLN 298 (379)
Q Consensus 230 s~~kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~~~ 298 (379)
..++||.||.||.+|++.|+.+|++. +||+..++++||.++||++.+|+|||||+|++++|+...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (80)
T 2dmq_A 4 GSSGKRMRTSFKHHQLRTMKSYFAIN----HNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLR 68 (80)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHH
Confidence 34679999999999999999999987 599999999999999999999999999999999887643
No 6
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.64 E-value=4.3e-17 Score=126.37 Aligned_cols=65 Identities=22% Similarity=0.383 Sum_probs=60.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCC
Q 016972 229 SSGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRDL 297 (379)
Q Consensus 229 ~s~~kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~~ 297 (379)
...++||.||.||.+|++.|+.+|++. +||+..++++||.+|||++.+|+|||||+|++++|+..
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~f~~~----~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 77 (80)
T 2da3_A 13 EPQRDKRLRTTITPEQLEILYQKYLLD----SNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGP 77 (80)
T ss_dssp CCCCCTTCCSSCCTTTHHHHHHHHHHC----SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhcc
Confidence 456789999999999999999999987 59999999999999999999999999999999988763
No 7
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=1.4e-16 Score=124.44 Aligned_cols=68 Identities=15% Similarity=0.295 Sum_probs=61.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCCCCCC
Q 016972 230 SGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRDLNGAG 301 (379)
Q Consensus 230 s~~kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~~~~~~ 301 (379)
..++||.||.||.+|++.|+.+|++. +|++...+++||.++||++.+|+|||+|+|++++|+..+...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~~~~ 71 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAKT----RYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQQN 71 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcc----CCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHccCC
Confidence 35679999999999999999999997 499999999999999999999999999999999988755443
No 8
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.59 E-value=8.7e-16 Score=117.20 Aligned_cols=64 Identities=11% Similarity=0.179 Sum_probs=59.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCC
Q 016972 230 SGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRDL 297 (379)
Q Consensus 230 s~~kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~~ 297 (379)
..++||.||.||.+|++.|+.+|++. +||+...+++||.++||++.+|+|||||+|++++|...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAAN----KFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGP 67 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCC
Confidence 34679999999999999999999997 49999999999999999999999999999999988763
No 9
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1e-15 Score=119.79 Aligned_cols=65 Identities=17% Similarity=0.244 Sum_probs=60.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCC
Q 016972 229 SSGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRDL 297 (379)
Q Consensus 229 ~s~~kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~~ 297 (379)
...++||.||.||.+|++.|+.+|++. +|++...+++||.++||++.+|+|||||+|++++|...
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEKQ----KYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccC
Confidence 345679999999999999999999997 49999999999999999999999999999999988764
No 10
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.58 E-value=2.3e-15 Score=118.02 Aligned_cols=66 Identities=18% Similarity=0.235 Sum_probs=60.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCCC
Q 016972 229 SSGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRDLN 298 (379)
Q Consensus 229 ~s~~kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~~~ 298 (379)
...++||.||.||.+|++.|+.+|++. +|++...+++||.++||++.+|+|||||+|++++|+..+
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k~ 83 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQRQ----KYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKN 83 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHHS----SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhC----CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhc
Confidence 345679999999999999999999987 499999999999999999999999999999999887643
No 11
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.57 E-value=9.8e-16 Score=116.49 Aligned_cols=64 Identities=20% Similarity=0.343 Sum_probs=59.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCC
Q 016972 230 SGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRDL 297 (379)
Q Consensus 230 s~~kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~~ 297 (379)
..++||.||.||.+|++.|+.+|+.. +||+..++++||.++||++.+|+|||+|+|++++|+..
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~----~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDAN----AYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGP 67 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcC----CCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhccc
Confidence 45679999999999999999999997 49999999999999999999999999999999988753
No 12
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1e-15 Score=116.79 Aligned_cols=64 Identities=20% Similarity=0.282 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCC
Q 016972 230 SGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRDL 297 (379)
Q Consensus 230 s~~kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~~ 297 (379)
....||.||.||.+|++.|+.+|++. +|++..++++||.++||++.+|+|||||+|++++|...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKT----QYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGP 67 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTC----SSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCC----CCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccCC
Confidence 34679999999999999999999987 59999999999999999999999999999999988754
No 13
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=8.8e-16 Score=116.96 Aligned_cols=63 Identities=17% Similarity=0.354 Sum_probs=58.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCC
Q 016972 231 GGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRDL 297 (379)
Q Consensus 231 ~~kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~~ 297 (379)
...||.||.||.+|++.|+.+|++. +||+..++++||.++||++.+|+|||+|+|++++|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~----~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQET----KYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcc----CCCCHHHHHHHHHHHCCCHHHeehccccccccccccCC
Confidence 4579999999999999999999997 49999999999999999999999999999999988754
No 14
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.55 E-value=1.3e-15 Score=115.76 Aligned_cols=64 Identities=17% Similarity=0.329 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCC
Q 016972 230 SGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRDL 297 (379)
Q Consensus 230 s~~kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~~ 297 (379)
...+||.||.||.+|++.|+.+|++. +||+..++++||.++||++.+|+|||+|+|++++|+..
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~----~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDIN----NSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHHC----SSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHC----CCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhcc
Confidence 34679999999999999999999997 59999999999999999999999999999999988753
No 15
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.53 E-value=2.9e-15 Score=112.89 Aligned_cols=61 Identities=20% Similarity=0.345 Sum_probs=57.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCC
Q 016972 232 GRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRD 296 (379)
Q Consensus 232 ~kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~ 296 (379)
++||.||.||.+|++.|+.+|++. +||+...+++||.++||++.+|+|||+|+|++++|+.
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAAN----PRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHC----SCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcC----CCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 469999999999999999999997 5999999999999999999999999999999998875
No 16
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.53 E-value=3.2e-16 Score=122.60 Aligned_cols=62 Identities=21% Similarity=0.364 Sum_probs=58.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCC
Q 016972 231 GGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRD 296 (379)
Q Consensus 231 ~~kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~ 296 (379)
..+||.||.||.+|++.|+.+|++. +|++..++++||.++||++.+|+|||||+|++++|+.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERT----HYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREE 66 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTC----SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhcc----CCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHh
Confidence 4679999999999999999999987 4999999999999999999999999999999998875
No 17
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.53 E-value=2.5e-15 Score=112.07 Aligned_cols=60 Identities=17% Similarity=0.273 Sum_probs=52.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCC
Q 016972 232 GRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKR 295 (379)
Q Consensus 232 ~kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~ 295 (379)
++||.||.||.+|++.|+.+|+... |++...+++||.++||++.+|+|||+|+|++++|+
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~----yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQK----YLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCS----CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCC----CCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 4689999999999999999999974 99999999999999999999999999999999875
No 18
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.52 E-value=2e-15 Score=115.17 Aligned_cols=64 Identities=13% Similarity=0.202 Sum_probs=58.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCC
Q 016972 230 SGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRDL 297 (379)
Q Consensus 230 s~~kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~~ 297 (379)
....||.||.||.+|++.|+.+|++. +|++...+++||.++||++.+|+|||+|+|++++|...
T Consensus 4 ~~~~~r~R~~ft~~q~~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 4 GSSGKGGQVRFSNDQTIELEKKFETQ----KYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcC----CCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCC
Confidence 34578999999999999999999987 49999999999999999999999999999999987654
No 19
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=7.3e-15 Score=113.88 Aligned_cols=64 Identities=14% Similarity=0.169 Sum_probs=58.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCCCC
Q 016972 232 GRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRDLNG 299 (379)
Q Consensus 232 ~kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~~~~ 299 (379)
..++.||+||.+|++.|+.+|++. +|++..++++||.++||++.+|+|||+|+|++++|+....
T Consensus 7 ~~~~~R~~ft~~Ql~~Le~~F~~~----~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~~~ 70 (76)
T 2dn0_A 7 GASIYKNKKSHEQLSALKGSFCRN----QFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGSR 70 (76)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHS----SSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCSSS
T ss_pred CCCCCCccCCHHHHHHHHHHHhcC----CCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcccC
Confidence 346679999999999999999997 4999999999999999999999999999999998876543
No 20
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.52 E-value=1.8e-15 Score=112.44 Aligned_cols=60 Identities=22% Similarity=0.401 Sum_probs=52.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCC
Q 016972 232 GRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKR 295 (379)
Q Consensus 232 ~kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~ 295 (379)
.+||.||.||.+|++.|+.+|+.. +||+...+++||.++||++.+|+|||||+|++++|.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (61)
T 2hdd_A 2 AEKRPRTAFSSEQLARLKREFNEN----RYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKKS 61 (61)
T ss_dssp -----CCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcc----CCCCHHHHHHHHHHHCcCHHHHHHHhhhhccccccC
Confidence 369999999999999999999998 499999999999999999999999999999998763
No 21
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.51 E-value=8.9e-15 Score=111.88 Aligned_cols=64 Identities=20% Similarity=0.379 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCC
Q 016972 230 SGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRDL 297 (379)
Q Consensus 230 s~~kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~~ 297 (379)
..++||.||.||.+|++.|+.+|+... |++...+++||.++||++.+|+|||+|+|++++|+..
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~----yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTH----YPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCS----SCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHh
Confidence 346789999999999999999999874 9999999999999999999999999999999988753
No 22
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.50 E-value=1.2e-14 Score=112.18 Aligned_cols=65 Identities=9% Similarity=0.067 Sum_probs=59.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCCCC
Q 016972 231 GGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRDLNG 299 (379)
Q Consensus 231 ~~kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~~~~ 299 (379)
...||.||.||.+|++.|+.+|++.. |++...+++||.++||++.+|+|||||+|++++|.....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~----yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNK----FITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKL 69 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTS----CCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCC----CcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhccc
Confidence 35689999999999999999999984 999999999999999999999999999999998876443
No 23
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.50 E-value=4.7e-15 Score=115.20 Aligned_cols=63 Identities=11% Similarity=0.227 Sum_probs=58.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCC
Q 016972 230 SGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRD 296 (379)
Q Consensus 230 s~~kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~ 296 (379)
..++||.||.||.+|++.|+.+|++. +|++...+++||.++||++.+|+|||||+|++++|..
T Consensus 6 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~ 68 (77)
T 1nk2_P 6 PNKKRKRRVLFTKAQTYELERRFRQQ----RYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQ 68 (77)
T ss_dssp SCCCCCCCCCCCHHHHHHHHHHHHHC----SCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhhc----CCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhh
Confidence 45678999999999999999999997 4999999999999999999999999999999998754
No 24
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.50 E-value=3.5e-15 Score=120.30 Aligned_cols=68 Identities=16% Similarity=0.175 Sum_probs=61.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhC---------------CCCceeeeecccccccCCC
Q 016972 230 SGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVG---------------VDRTVLKVWMHNNKSTFAK 294 (379)
Q Consensus 230 s~~kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiG---------------v~r~V~KVWfhNnK~k~~k 294 (379)
..++||.||.||.+|++.|+.+|++. +||+..++++|+.++| |+..+|+|||||+|++++|
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~----~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr 79 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNEN----QYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKR 79 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHH
Confidence 35679999999999999999999997 5999999999999999 9999999999999999988
Q ss_pred CCCCCCC
Q 016972 295 RDLNGAG 301 (379)
Q Consensus 295 ~~~~~~~ 301 (379)
+..+.+.
T Consensus 80 ~~~~~~~ 86 (95)
T 2cuf_A 80 RANIAAI 86 (95)
T ss_dssp HHHCCCC
T ss_pred HhhccCC
Confidence 8755443
No 25
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.50 E-value=3.8e-15 Score=117.14 Aligned_cols=62 Identities=16% Similarity=0.233 Sum_probs=53.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCC
Q 016972 231 GGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRD 296 (379)
Q Consensus 231 ~~kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~ 296 (379)
..+||.||.||.+|++.|+.+|++.. |++...+++||.++||++.+|+|||+|+|++++|..
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~----yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNH----YLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCS----SCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCC----CCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 45799999999999999999999984 999999999999999999999999999999998865
No 26
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.49 E-value=2.8e-15 Score=112.25 Aligned_cols=61 Identities=16% Similarity=0.235 Sum_probs=55.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCC
Q 016972 232 GRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRD 296 (379)
Q Consensus 232 ~kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~ 296 (379)
++||.||.||.+|++.|+.+|++. +||+...+++||.++||+..+|+|||+|+|++++|..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFN----KYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcC----CCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 368999999999999999999997 4999999999999999999999999999999987753
No 27
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.49 E-value=1.3e-14 Score=114.92 Aligned_cols=69 Identities=6% Similarity=0.105 Sum_probs=60.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCCCC
Q 016972 230 SGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRDLNG 299 (379)
Q Consensus 230 s~~kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~~~~ 299 (379)
..++||.||.||.+|++.|+++|+.. +.-+||+..++++||.++||++.+|+|||+|+|.+++|.....
T Consensus 4 ~~~~rk~R~~~s~~q~~~L~~~f~~~-~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~~ 72 (83)
T 2dmn_A 4 GSSGKKRKGNLPAESVKILRDWMYKH-RFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQ 72 (83)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHT-TTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTCC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHh-ccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHHh
Confidence 45679999999999999999998874 3446999999999999999999999999999999998775443
No 28
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.48 E-value=3.9e-15 Score=113.39 Aligned_cols=62 Identities=16% Similarity=0.239 Sum_probs=58.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCCC
Q 016972 233 RKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRDLN 298 (379)
Q Consensus 233 kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~~~ 298 (379)
+||.||.||.+|++.|+.+|+... |++...+++||.++||++.+|+|||||+|++++|....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~----yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~~ 63 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNR----YLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKT 63 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCS----SCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCC----CCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhccc
Confidence 689999999999999999999884 99999999999999999999999999999999887643
No 29
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.48 E-value=6.3e-15 Score=118.93 Aligned_cols=66 Identities=14% Similarity=0.263 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCCC
Q 016972 229 SSGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRDLN 298 (379)
Q Consensus 229 ~s~~kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~~~ 298 (379)
...++||.||.||.+|++.|+.+|++. +|++...+++||.++||++.+|||||||+|++++|+...
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~----~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 78 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHKQ----KYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAE 78 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHC----SCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHcC----CCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHH
Confidence 345679999999999999999999998 499999999999999999999999999999999887543
No 30
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.48 E-value=5.6e-15 Score=108.41 Aligned_cols=57 Identities=19% Similarity=0.286 Sum_probs=53.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCC
Q 016972 234 KRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAK 294 (379)
Q Consensus 234 KR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k 294 (379)
||.||.||.+|++.|+.+|++. +||+...+++||.++||++.+|+|||+|+|++++|
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQK----QYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHC----SCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcC----CCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 6899999999999999999997 49999999999999999999999999999998765
No 31
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.47 E-value=8e-15 Score=106.72 Aligned_cols=57 Identities=18% Similarity=0.248 Sum_probs=53.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCC
Q 016972 233 RKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFA 293 (379)
Q Consensus 233 kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~ 293 (379)
+||.||.||.+|++.|+.+|++. +|++...+++||.++||++.+|+|||||+|++++
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQ----RYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTC----SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 68999999999999999999987 4999999999999999999999999999998764
No 32
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.47 E-value=1.8e-14 Score=114.63 Aligned_cols=61 Identities=11% Similarity=0.147 Sum_probs=55.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCCCC
Q 016972 235 RFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRDLNG 299 (379)
Q Consensus 235 R~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~~~~ 299 (379)
+.|++||.+|++.|+..|++. +||+..++++||.++||++.+|||||+|+|++++|....-
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~----~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l~w 65 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQC----QWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLKW 65 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCCSS
T ss_pred CCCCCCCHHHHHHHHHHHHHC----CCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHHHH
Confidence 456789999999999999988 5999999999999999999999999999999998886543
No 33
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.47 E-value=4e-15 Score=113.18 Aligned_cols=63 Identities=14% Similarity=0.252 Sum_probs=58.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCCCC
Q 016972 233 RKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRDLNG 299 (379)
Q Consensus 233 kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~~~~ 299 (379)
+||.||.||.+|++.|+.+|+.. +|++...+++||.++||+..+|+|||+|+|++++|+..+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~~ 64 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQG----RYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQH 64 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTC----SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcC----CCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhccc
Confidence 58999999999999999999987 4999999999999999999999999999999998876443
No 34
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.47 E-value=7.2e-15 Score=108.89 Aligned_cols=58 Identities=17% Similarity=0.338 Sum_probs=54.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCC
Q 016972 234 KRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKR 295 (379)
Q Consensus 234 KR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~ 295 (379)
||.||.||.+|++.|+.+|++.. ||+...+++||.++||++.+|+|||+|+|++++|+
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~----yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKEN----YVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCS----CCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 78999999999999999999984 99999999999999999999999999999998765
No 35
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.47 E-value=2.6e-15 Score=114.02 Aligned_cols=63 Identities=21% Similarity=0.337 Sum_probs=58.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCCC
Q 016972 232 GRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRDLN 298 (379)
Q Consensus 232 ~kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~~~ 298 (379)
++||.||.||.+|++.|+.+|+.. +||+...+++||.++||++.+|+|||+|+|++++|+...
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~ 64 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRN----RYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEF 64 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTC----SSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcc----CCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhc
Confidence 579999999999999999999987 499999999999999999999999999999999887643
No 36
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.47 E-value=1.2e-14 Score=117.49 Aligned_cols=64 Identities=16% Similarity=0.209 Sum_probs=55.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCC
Q 016972 229 SSGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRD 296 (379)
Q Consensus 229 ~s~~kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~ 296 (379)
+....+|.||.||.+|++.|+.+|++. +|++...+++||.++||++.+|||||||+|++++|+.
T Consensus 21 ~~~~~~r~Rt~ft~~Ql~~Le~~F~~~----~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 21 PKSGSTGKICKKTPEQLHMLKSAFVRT----QWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp ------CCSSSSCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhc
Confidence 345568999999999999999999987 5999999999999999999999999999999998875
No 37
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.46 E-value=7.8e-15 Score=114.75 Aligned_cols=62 Identities=26% Similarity=0.388 Sum_probs=56.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCC
Q 016972 230 SGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKR 295 (379)
Q Consensus 230 s~~kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~ 295 (379)
..++||.||.||.+|++.|+.+|++. +||+...+++||.++||+..+|+|||+|+|++++|+
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~ 76 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERT----QYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQ 76 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhh
Confidence 34678999999999999999999987 599999999999999999999999999999998775
No 38
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.45 E-value=1.5e-14 Score=109.98 Aligned_cols=61 Identities=16% Similarity=0.254 Sum_probs=57.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCC
Q 016972 233 RKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRDL 297 (379)
Q Consensus 233 kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~~ 297 (379)
+||.||.||.+|++.|+.+|+... |++...+++||.++||+..+|+|||+|+|++++|...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~----yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQK----YLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSS----SCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCccCHHHHHHHHHHHHhCC----CCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 689999999999999999999984 9999999999999999999999999999999988753
No 39
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.45 E-value=1.6e-14 Score=112.16 Aligned_cols=62 Identities=13% Similarity=0.166 Sum_probs=57.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCC
Q 016972 230 SGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKR 295 (379)
Q Consensus 230 s~~kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~ 295 (379)
....||.||.||.+|++.|+.+|+.. +|++...+++||.++||++.+|+|||||+|++++|.
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 71 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFN----MYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKI 71 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcc----CCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 34578999999999999999999987 499999999999999999999999999999998764
No 40
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.45 E-value=9.5e-15 Score=116.07 Aligned_cols=62 Identities=18% Similarity=0.284 Sum_probs=54.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCC
Q 016972 231 GGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRD 296 (379)
Q Consensus 231 ~~kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~ 296 (379)
..+||.||.||.+|++.|+.+|++. +|++...+++||.++||++.+|+|||||+|++++|+.
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFHFN----RYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTC----SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhcc----CCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 3579999999999999999999987 4999999999999999999999999999999998763
No 41
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.45 E-value=4.5e-14 Score=108.32 Aligned_cols=61 Identities=13% Similarity=0.147 Sum_probs=57.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCC
Q 016972 233 RKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRDL 297 (379)
Q Consensus 233 kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~~ 297 (379)
.++.||.||.+|++.|+.+|++. +|++...+++||.++||++.+|||||||+|++++|+..
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKN----QFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCCCcCCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCc
Confidence 48899999999999999999987 49999999999999999999999999999999988763
No 42
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.45 E-value=1.4e-14 Score=109.41 Aligned_cols=61 Identities=16% Similarity=0.344 Sum_probs=57.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCC
Q 016972 233 RKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRDL 297 (379)
Q Consensus 233 kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~~ 297 (379)
.||.||.||.+|++.|+.+|++. +||+...+++||.++||++.+|+|||+|+|++++|+..
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRVN----CYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTTC----SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred CcCCCCCCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 37999999999999999999987 49999999999999999999999999999999988754
No 43
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.45 E-value=2.3e-14 Score=107.26 Aligned_cols=63 Identities=11% Similarity=0.217 Sum_probs=55.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCC
Q 016972 232 GRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKR 295 (379)
Q Consensus 232 ~kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~ 295 (379)
..||.||.||.+|++.|+.+|... ..-+||+..++++||.++||++.+|+|||+|+|++++|+
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~~-~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 64 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYSH-LSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 64 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHT-TTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSCC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHc-ccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhccC
Confidence 358999999999999999999321 223699999999999999999999999999999999874
No 44
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.44 E-value=1.9e-14 Score=106.51 Aligned_cols=58 Identities=16% Similarity=0.243 Sum_probs=47.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCC
Q 016972 232 GRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFA 293 (379)
Q Consensus 232 ~kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~ 293 (379)
++||.||.||.+|++.|+.+|+.. +||+..++++||.++||+..+|+|||+|+|++++
T Consensus 4 k~rr~Rt~ft~~q~~~Le~~f~~~----~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 4 KSPKGKSSISPQARAFLEEVFRRK----QSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp --------CCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhC----CCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 568999999999999999999998 5999999999999999999999999999999864
No 45
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=5.7e-14 Score=108.96 Aligned_cols=61 Identities=8% Similarity=0.104 Sum_probs=55.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCCC
Q 016972 234 KRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRDLN 298 (379)
Q Consensus 234 KR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~~~ 298 (379)
.+.|++||.+|++.|+.+|++. +|++...+++||.++||++.+|+|||||+|++++|+...
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~~----~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~ 68 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQN----PLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETK 68 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCS
T ss_pred CCCCccCCHHHHHHHHHHHhcc----CCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhc
Confidence 3556789999999999999998 499999999999999999999999999999999887643
No 46
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.43 E-value=3.5e-14 Score=108.89 Aligned_cols=66 Identities=9% Similarity=0.106 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCC
Q 016972 231 GGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRDL 297 (379)
Q Consensus 231 ~~kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~~ 297 (379)
.++||.||.||.+|++.|+.+|+.. +.-+||+..++++||.++||++.+|+|||+|+|.+++|...
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~-~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQH-IGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHT-TTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHh-CCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 4578999999999999999999873 23469999999999999999999999999999999987764
No 47
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.40 E-value=1.9e-14 Score=116.38 Aligned_cols=62 Identities=19% Similarity=0.294 Sum_probs=54.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCC
Q 016972 231 GGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRD 296 (379)
Q Consensus 231 ~~kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~ 296 (379)
...||.||.||.+|++.|+.+|++. +|++...+++||.++||++.+|||||||+|++++|+.
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~----~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 93 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFN----KYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRE 93 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTC----SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhcc----CCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHh
Confidence 4578999999999999999999987 5999999999999999999999999999999998764
No 48
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.40 E-value=5.1e-14 Score=104.33 Aligned_cols=57 Identities=19% Similarity=0.354 Sum_probs=49.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCC
Q 016972 236 FRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRD 296 (379)
Q Consensus 236 ~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~ 296 (379)
.||.||.+|++.|+.+|++. +||+...+++||.++||++.+|+|||+|+|++++|+.
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRT----HYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcC----CCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 48999999999999999997 4999999999999999999999999999999998764
No 49
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.40 E-value=6.1e-14 Score=122.80 Aligned_cols=62 Identities=15% Similarity=0.279 Sum_probs=54.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCC
Q 016972 230 SGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKR 295 (379)
Q Consensus 230 s~~kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~ 295 (379)
..++||.||.||.+|++.|+.+|++. +|++...+++||.++||++.+|||||||+|++++|+
T Consensus 98 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 98 LSRRRKKRTSIETNIRVALEKSFMEN----QKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCcCccccCHHHHHHHHHHHhhc----CCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 34789999999999999999999997 499999999999999999999999999999999886
No 50
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=2.6e-13 Score=108.80 Aligned_cols=59 Identities=8% Similarity=0.066 Sum_probs=53.6
Q ss_pred CCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCCCCC
Q 016972 238 TKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRDLNGA 300 (379)
Q Consensus 238 TkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~~~~~ 300 (379)
.+||.+|++.|+.+|++. +|++...+++||.++||++.+|||||||+|++++++.....
T Consensus 18 k~~t~~Ql~~Le~~F~~~----~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~~~ 76 (89)
T 2dmp_A 18 KEKTQGQVKILEDSFLKS----SFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQAVL 76 (89)
T ss_dssp CCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSCCC
T ss_pred ccCCHHHHHHHHHHHccC----CCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHhhh
Confidence 349999999999999998 49999999999999999999999999999999988775443
No 51
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.39 E-value=6.3e-14 Score=107.86 Aligned_cols=59 Identities=10% Similarity=0.164 Sum_probs=55.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHH-hCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCC
Q 016972 234 KRFRTKFSQSQKEKMFEFAER-VGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRD 296 (379)
Q Consensus 234 KR~RTkFT~EQkekM~~faEk-~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~ 296 (379)
++.||.||.+|++.|+.+|++ . +||+...+++||.++||++.+|+|||||+|++++|+.
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~----~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVN----KHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTT----SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 578999999999999999996 6 5999999999999999999999999999999998876
No 52
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.38 E-value=6.7e-14 Score=107.33 Aligned_cols=65 Identities=15% Similarity=0.281 Sum_probs=56.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCCC
Q 016972 233 RKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRDLN 298 (379)
Q Consensus 233 kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~~~ 298 (379)
.||.||.||.+|++.|+.+|... .+-+||+...+++||.++||+..+|+|||+|+|.+++|+...
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~~-~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYSH-LSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHT-TTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHh-ccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 38999999999999999999321 223699999999999999999999999999999999887644
No 53
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.38 E-value=6.7e-14 Score=107.25 Aligned_cols=59 Identities=10% Similarity=0.183 Sum_probs=55.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHH-hCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCC
Q 016972 234 KRFRTKFSQSQKEKMFEFAER-VGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRD 296 (379)
Q Consensus 234 KR~RTkFT~EQkekM~~faEk-~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~ 296 (379)
.+.||.||.+|++.|+.+|++ . +||+...+++||.++||++.+|||||||+|++++|+.
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~----~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVN----KHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSC----SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccC----CCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 467899999999999999997 6 5999999999999999999999999999999998876
No 54
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.38 E-value=1.3e-13 Score=119.42 Aligned_cols=62 Identities=16% Similarity=0.337 Sum_probs=55.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCC
Q 016972 230 SGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKR 295 (379)
Q Consensus 230 s~~kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~ 295 (379)
..++||.||.||.+|++.|+.+|++.. ||+...+++||.++||++.+|||||||+|++++|+
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~----yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHS----KPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCS----SCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcC----CCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 456788999999999999999999984 99999999999999999999999999999999886
No 55
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.37 E-value=5.3e-14 Score=110.93 Aligned_cols=64 Identities=16% Similarity=0.281 Sum_probs=55.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCC
Q 016972 233 RKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRDL 297 (379)
Q Consensus 233 kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~~ 297 (379)
.||.||.||.+|++.|+.+|... .+-+||+..++++||.++||++.+|+|||+|+|.+++|+..
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~h-~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 64 (87)
T 1b72_B 1 ARRKRRNFNKQATEILNEYFYSH-LSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (87)
T ss_dssp --CCCCCCCHHHHHHHHHHHHTT-TTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHHh-ccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccc
Confidence 37999999999999999999421 23369999999999999999999999999999999988753
No 56
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.37 E-value=3.9e-13 Score=109.26 Aligned_cols=59 Identities=12% Similarity=0.217 Sum_probs=53.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCC
Q 016972 234 KRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRDL 297 (379)
Q Consensus 234 KR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~~ 297 (379)
+++| +||.+|++.|+..|++. +|++...+++||.++||++.+|||||||+|++++|+..
T Consensus 13 ~k~k-~~t~~Ql~~Le~~F~~~----~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~ 71 (89)
T 2ecb_A 13 QKFK-EKTAEQLRVLQASFLNS----SVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEE 71 (89)
T ss_dssp CCCC-CCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCS
T ss_pred hhhc-cCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHH
Confidence 3444 89999999999999998 49999999999999999999999999999999988764
No 57
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.37 E-value=1.6e-13 Score=118.74 Aligned_cols=61 Identities=23% Similarity=0.465 Sum_probs=57.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCC
Q 016972 230 SGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAK 294 (379)
Q Consensus 230 s~~kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k 294 (379)
..++||.||.||.+|++.|+.+|++. +||+...+++||.++||++.+|+|||||+|++++|
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~~----~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEKN----PLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 45788999999999999999999997 49999999999999999999999999999999876
No 58
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.36 E-value=1.3e-13 Score=121.82 Aligned_cols=65 Identities=14% Similarity=0.293 Sum_probs=51.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCCC
Q 016972 230 SGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRDLN 298 (379)
Q Consensus 230 s~~kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~~~ 298 (379)
..++||.||.||.+|++.|+.+|++. +|++...+++||.++||++.+|||||||+|++++|+...
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~----~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 160 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKC----PKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPA 160 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC-
T ss_pred cccCCCCceeccHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccCC
Confidence 45678999999999999999999997 499999999999999999999999999999999887643
No 59
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.35 E-value=2.3e-13 Score=107.82 Aligned_cols=63 Identities=10% Similarity=0.175 Sum_probs=55.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCC
Q 016972 231 GGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAK 294 (379)
Q Consensus 231 ~~kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k 294 (379)
..++|.||.||.+|++.|+.+|++. |.-+||+..++++||.++||++.+|+|||+|+|++++.
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~-~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKN-IENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHT-TSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHh-CCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 3456779999999999999999882 33369999999999999999999999999999998763
No 60
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.33 E-value=1.3e-13 Score=101.14 Aligned_cols=54 Identities=17% Similarity=0.249 Sum_probs=49.6
Q ss_pred CCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCC
Q 016972 238 TKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKR 295 (379)
Q Consensus 238 TkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~ 295 (379)
|.||.+|++.|+.+|++.. ||+...+++||.++||++.+|||||+|+|++++|+
T Consensus 2 T~ft~~Ql~~Le~~F~~~~----yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQK----YLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCS----SCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcC----CcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 7899999999999999984 99999999999999999999999999999998764
No 61
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.32 E-value=4.6e-13 Score=116.79 Aligned_cols=65 Identities=12% Similarity=0.253 Sum_probs=54.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCCC
Q 016972 230 SGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRDLN 298 (379)
Q Consensus 230 s~~kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~~~ 298 (379)
..++||.||.||.+|++.|+.+|++. +||+...+++||.++||++.+|+|||||+|.+++|....
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~----~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~~ 158 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKEN----KRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWLE 158 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC---
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCCC
Confidence 34579999999999999999999998 599999999999999999999999999999999877643
No 62
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.32 E-value=4.3e-13 Score=105.84 Aligned_cols=63 Identities=8% Similarity=0.149 Sum_probs=54.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCC
Q 016972 233 RKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRD 296 (379)
Q Consensus 233 kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~ 296 (379)
|++.||.||.+|++.|+.+|+.. +.-+||+..++++||.++||+..+|+|||+|+|.++++..
T Consensus 2 K~krr~rft~~q~~~Le~~f~~h-~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 2 KPYRGHRFTKENVRILESWFAKN-IENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHT-SSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhh-CCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccc
Confidence 45567779999999999999982 3336999999999999999999999999999999998864
No 63
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=2.1e-13 Score=113.90 Aligned_cols=64 Identities=20% Similarity=0.310 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHh---------------------CCCCceeeeeccc
Q 016972 229 SSGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV---------------------GVDRTVLKVWMHN 287 (379)
Q Consensus 229 ~s~~kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~ei---------------------Gv~r~V~KVWfhN 287 (379)
.+.++||.||+||.+|+..|+.+|++. +||+...+++|+.++ +|++.+|+|||+|
T Consensus 2 ~~~~~Rr~Rt~ft~~ql~~Le~~F~~~----~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqN 77 (102)
T 2da6_A 2 SSGSSGRNRFKWGPASQQILYQAYDRQ----KNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFAN 77 (102)
T ss_dssp TTCCSCCCCCCCCHHHHHHHHHHHTTC----SSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHcCC----CCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecc
Confidence 345789999999999999999999998 499999999999999 7999999999999
Q ss_pred ccccCCCCC
Q 016972 288 NKSTFAKRD 296 (379)
Q Consensus 288 nK~k~~k~~ 296 (379)
+|++++++.
T Consensus 78 RR~k~kr~~ 86 (102)
T 2da6_A 78 RRKEEAFRQ 86 (102)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHhh
Confidence 999998775
No 64
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.31 E-value=4.1e-13 Score=99.25 Aligned_cols=59 Identities=10% Similarity=0.176 Sum_probs=52.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCC
Q 016972 236 FRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKR 295 (379)
Q Consensus 236 ~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~ 295 (379)
.||.||.+|++.|+.+|++. +.-+||+..++++||.++||++.+|+|||+|+|++++|.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~-~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKN-IENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHT-TTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHc-CCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 37999999999999999982 222599999999999999999999999999999998764
No 65
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.30 E-value=4.7e-13 Score=110.33 Aligned_cols=62 Identities=21% Similarity=0.344 Sum_probs=52.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHH------------------hC---CCCceeeeeccccc
Q 016972 231 GGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNE------------------VG---VDRTVLKVWMHNNK 289 (379)
Q Consensus 231 ~~kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~e------------------iG---v~r~V~KVWfhNnK 289 (379)
.++||.||.||.+|++.|+.+|++. +||+...+++|+.+ +| |+..+|+|||||+|
T Consensus 7 ~k~rr~Rt~ft~~Ql~~LE~~F~~~----~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR 82 (99)
T 1lfb_A 7 KKGRRNRFKWGPASQQILFQAYERQ----KNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRR 82 (99)
T ss_dssp ------CCCCCHHHHHHHHHHHTTC----SSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhcC----CCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHH
Confidence 4679999999999999999999987 59999999999999 99 99999999999999
Q ss_pred ccCCCCC
Q 016972 290 STFAKRD 296 (379)
Q Consensus 290 ~k~~k~~ 296 (379)
++.+++.
T Consensus 83 ~k~k~k~ 89 (99)
T 1lfb_A 83 KEEAFRH 89 (99)
T ss_dssp HTTSCCC
T ss_pred HHHHHhc
Confidence 9887765
No 66
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.25 E-value=5.8e-13 Score=116.26 Aligned_cols=61 Identities=20% Similarity=0.364 Sum_probs=56.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCC
Q 016972 231 GGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKR 295 (379)
Q Consensus 231 ~~kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~ 295 (379)
.++||.||.||.+|+..|+.+|++. +|++...+++||.++||++.+|||||||+|++++|.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~----~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKS----PKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTC----SCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccC----CCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 5688999999999999999999877 499999999999999999999999999999998774
No 67
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.24 E-value=1e-12 Score=101.98 Aligned_cols=60 Identities=3% Similarity=0.078 Sum_probs=54.0
Q ss_pred CCCCCCCCHHHHHHHHHHH-HHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCC
Q 016972 234 KRFRTKFSQSQKEKMFEFA-ERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRDL 297 (379)
Q Consensus 234 KR~RTkFT~EQkekM~~fa-Ek~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~~ 297 (379)
.+.|+.||.+|++.|+.+| +.. +|++...+++||.++||++.+|||||||+|+++++...
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~----~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~~ 69 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVT----KYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSGP 69 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTC----SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcC----CCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCCC
Confidence 4566778899999999999 877 49999999999999999999999999999999987654
No 68
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.15 E-value=1.5e-11 Score=93.68 Aligned_cols=56 Identities=7% Similarity=0.074 Sum_probs=50.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCC
Q 016972 236 FRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKR 295 (379)
Q Consensus 236 ~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~ 295 (379)
.+..++.+|++.|+.+|++. +|++...+++||.++||++.+|||||||+|+|.++.
T Consensus 6 ~~~~p~~~Ql~~Le~~F~~~----~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~~ 61 (64)
T 2e19_A 6 SGQPPLKNLLSLLKAYYALN----AQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISV 61 (64)
T ss_dssp SCCCCCHHHHHHHHHHHTTC----SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSCS
T ss_pred CCCCccHHHHHHHHHHHhcC----CCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCCC
Confidence 34556799999999999887 499999999999999999999999999999987664
No 69
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.11 E-value=2.6e-11 Score=94.12 Aligned_cols=56 Identities=13% Similarity=0.212 Sum_probs=51.6
Q ss_pred CCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCCC
Q 016972 239 KFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRDLN 298 (379)
Q Consensus 239 kFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~~~ 298 (379)
..|.+|++.|+.+|++.. |++...+++||.++||++.+|||||||+|++++|+...
T Consensus 10 ~~t~~ql~~LE~~F~~~~----yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 10 HMSHTQVIELERKFSHQK----YLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCCHHHHHHHHHHHHHCS----CCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSS
T ss_pred cCCHHHHHHHHHHHhcCC----CCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhh
Confidence 468999999999999984 99999999999999999999999999999999887643
No 70
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.08 E-value=1.3e-11 Score=96.33 Aligned_cols=50 Identities=18% Similarity=0.274 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCC
Q 016972 241 SQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAK 294 (379)
Q Consensus 241 T~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k 294 (379)
|.+|++.|+..|++. +||+..++++||.++||++.+|||||+|+|+++++
T Consensus 12 ~~~Ql~~LE~~F~~~----~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kk 61 (66)
T 3nau_A 12 TKEQIAHLKASFLQS----QFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQR 61 (66)
T ss_dssp CHHHHHHHHHHHHGG----GSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcC----CCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhc
Confidence 689999999999998 59999999999999999999999999999999875
No 71
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.04 E-value=3.4e-11 Score=91.96 Aligned_cols=59 Identities=8% Similarity=0.205 Sum_probs=50.4
Q ss_pred CCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCCC
Q 016972 239 KFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRDLN 298 (379)
Q Consensus 239 kFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~~~ 298 (379)
+||.+|++.|+.+|+.. +.-+||+..++++||.++||++.+|+|||+|+|.+++|....
T Consensus 4 ~f~~~~~~~L~~~f~~h-~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 62 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQH-LTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 62 (67)
T ss_dssp --CHHHHHHHHHHHHHT-TTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC--
T ss_pred cCCHHHHHHHHHHHHHh-ccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHH
Confidence 79999999999999843 445699999999999999999999999999999999887644
No 72
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.03 E-value=5.9e-11 Score=91.60 Aligned_cols=53 Identities=6% Similarity=0.174 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCC
Q 016972 242 QSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRDL 297 (379)
Q Consensus 242 ~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~~ 297 (379)
++|++.|+.+|.+.- .|++...+++||.++||++++|||||||+|+++++..+
T Consensus 9 ~~~~~~LE~~F~~~~---~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~~~ 61 (64)
T 1x2m_A 9 AQPNAILEKVFTAIT---KHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPSGP 61 (64)
T ss_dssp SCHHHHHHHHHHTTC---SSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCSSC
T ss_pred chHHHHHHHHHHHcC---CCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCCC
Confidence 568999999996532 58999999999999999999999999999999987654
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.00 E-value=4e-11 Score=109.31 Aligned_cols=62 Identities=19% Similarity=0.293 Sum_probs=52.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhC---------------------CCCceeeeecccc
Q 016972 230 SGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVG---------------------VDRTVLKVWMHNN 288 (379)
Q Consensus 230 s~~kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiG---------------------v~r~V~KVWfhNn 288 (379)
..++||.||+||.+|++.|+.+|++.. ||+...+++++.+++ |+..+|+|||||+
T Consensus 112 ~~k~rr~R~~ft~~ql~~Le~~F~~~~----yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNR 187 (194)
T 1ic8_A 112 TKKGRRNRFKWGPASQQILFQAYERQK----NPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANR 187 (194)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHHC----CCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHH
T ss_pred cccCCCCCcccCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhh
Confidence 356799999999999999999999985 999999999999999 9999999999999
Q ss_pred cccCCCC
Q 016972 289 KSTFAKR 295 (379)
Q Consensus 289 K~k~~k~ 295 (379)
|.+.+.+
T Consensus 188 R~~~k~~ 194 (194)
T 1ic8_A 188 RKEEAFR 194 (194)
T ss_dssp HHHCC--
T ss_pred hhhhhcC
Confidence 9988654
No 74
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=98.91 E-value=3.6e-10 Score=105.41 Aligned_cols=61 Identities=15% Similarity=0.291 Sum_probs=52.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhC---------------------CCCceeeeeccc
Q 016972 229 SSGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVG---------------------VDRTVLKVWMHN 287 (379)
Q Consensus 229 ~s~~kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiG---------------------v~r~V~KVWfhN 287 (379)
...++||.||+||++|++.|+.+|++. +||+...+++|+.+++ |++.+|+|||+|
T Consensus 138 ~~~k~RR~R~~ft~~ql~~Le~~F~~~----~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqN 213 (221)
T 2h8r_A 138 TNKKMRRNRFKWGPASQQILYQAYDRQ----KNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFAN 213 (221)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHH
T ss_pred ccCCCCCCCcCCCHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHH
Confidence 345679999999999999999999997 4999999999999987 888899999999
Q ss_pred ccccCC
Q 016972 288 NKSTFA 293 (379)
Q Consensus 288 nK~k~~ 293 (379)
+|....
T Consensus 214 RR~~~~ 219 (221)
T 2h8r_A 214 RRKEEA 219 (221)
T ss_dssp HHTTCC
T ss_pred hhhhhh
Confidence 998654
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=3.9e-10 Score=89.23 Aligned_cols=45 Identities=13% Similarity=0.259 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccc
Q 016972 242 QSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKS 290 (379)
Q Consensus 242 ~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~ 290 (379)
.+||..|+++|+.+. +|+.++++++|..+||+++||||||+|+|+
T Consensus 14 k~ql~~Lk~yF~~n~----~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa 58 (71)
T 2da7_A 14 KDHMSVLKAYYAMNM----EPNSDELLKISIAVGLPQEFVKEWFEQRKV 58 (71)
T ss_dssp THHHHHHHHHHHHCS----SCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC----CCCHHHHHHHHHHhCCCHHHHHHHHhhccc
Confidence 589999999999985 999999999999999999999999999997
No 76
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.81 E-value=7.7e-10 Score=103.97 Aligned_cols=57 Identities=12% Similarity=0.205 Sum_probs=54.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCC
Q 016972 233 RKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFA 293 (379)
Q Consensus 233 kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~ 293 (379)
.+|.|+.|+.+|++.|+..|++.. |++...+++||+++||++++|||||||+|.|+|
T Consensus 365 ~~~~~~~~~~~q~~~Le~~f~~~~----yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 365 QTAAAAAISPQARAFLEQVFRRKQ----SLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHHCSSCHHHHHHHHHHHHHCS----CCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhhcchHHHHHHHHHhcCC----CcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 478999999999999999999985 999999999999999999999999999999875
No 77
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=98.45 E-value=2.6e-08 Score=81.47 Aligned_cols=58 Identities=3% Similarity=0.021 Sum_probs=51.5
Q ss_pred CCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCC
Q 016972 238 TKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRD 296 (379)
Q Consensus 238 TkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~ 296 (379)
..|+.+|++.|++++... +.-.||+++++++||.++||++..|++||+|+|.+++|..
T Consensus 10 ~~l~~~~~~iL~~W~~~h-~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~ 67 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEH-RYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDM 67 (89)
T ss_dssp CCCCHHHHHHHHHHHHHT-SGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHh-ccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHH
Confidence 358899999999988763 3446999999999999999999999999999999997764
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=97.15 E-value=3.5e-05 Score=54.03 Aligned_cols=20 Identities=30% Similarity=0.732 Sum_probs=17.3
Q ss_pred ceeeeecccccccCCCCCCC
Q 016972 279 TVLKVWMHNNKSTFAKRDLN 298 (379)
Q Consensus 279 ~V~KVWfhNnK~k~~k~~~~ 298 (379)
+.|||||||+|+|++|+...
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~ 20 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFN 20 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHH
T ss_pred CCceeccHHHHHHHHHHhHH
Confidence 46899999999999998754
No 79
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=95.04 E-value=0.017 Score=44.87 Aligned_cols=47 Identities=19% Similarity=0.266 Sum_probs=37.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccc
Q 016972 232 GRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHN 287 (379)
Q Consensus 232 ~kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhN 287 (379)
++|+.|.+||.|+|+++...++ .|. .+.++|.++||++.+|..|+..
T Consensus 15 ~~~~~~~~ys~e~k~~~v~~~~-~g~--------s~~~iA~~~gIs~sTl~rW~k~ 61 (87)
T 2elh_A 15 KGKRPLRSLTPRDKIHAIQRIH-DGE--------SKASVARDIGVPESTLRGWCKN 61 (87)
T ss_dssp CCSSCCSSCCHHHHHHHHHHHH-HTC--------CHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHH-CCC--------CHHHHHHHHCcCHHHHHHHHHH
Confidence 3456788999999988877764 441 3679999999999999999854
No 80
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=93.71 E-value=0.03 Score=40.46 Aligned_cols=46 Identities=13% Similarity=0.229 Sum_probs=34.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccc
Q 016972 237 RTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHN 287 (379)
Q Consensus 237 RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhN 287 (379)
|.+||.|.|+++.++.+. | ......+.++|.++||++.+|..|...
T Consensus 3 r~~ys~efK~~~~~~~~~-g----~s~~~~~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRN-D----NDCKGNQRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp CCCCCHHHHHHHHHHHHH-C----TTTTTCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHc-C----CCcchHHHHHHHHHCcCHHHHHHHHHH
Confidence 568999999998665443 3 111113789999999999999999754
No 81
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=93.52 E-value=0.022 Score=46.09 Aligned_cols=49 Identities=12% Similarity=0.194 Sum_probs=39.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccc
Q 016972 235 RFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKS 290 (379)
Q Consensus 235 R~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~ 290 (379)
+.|++||.|||.++.+.++..| .. .+.++|.++||++.+|.-|+.+.+.
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~~g----~~---~~~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEENP----DL---RKGEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHHCT----TS---CHHHHHHHHTCCHHHHHHHHHTHHH
T ss_pred CcceeCCHHHHHHHHHHHHHCC----CC---cHHHHHHHhCCCHHHHHHHHhchhh
Confidence 3578999999999999886655 22 2347899999999999999987665
No 82
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=91.84 E-value=0.066 Score=41.62 Aligned_cols=43 Identities=23% Similarity=0.531 Sum_probs=34.5
Q ss_pred CCCCCHHHHHHHHHHHHHh-CccCCCCCHHHHHHHHHHhCCCCceeeeeccc
Q 016972 237 RTKFSQSQKEKMFEFAERV-GWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHN 287 (379)
Q Consensus 237 RTkFT~EQkekM~~faEk~-GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhN 287 (379)
|.+||.|+|.++....... | ..+.++|.++||++.+|..|...
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g--------~s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDG--------ASLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGG--------SCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC--------ChHHHHHHHHCcCHHHHHHHHHH
Confidence 4689999998887765433 3 24789999999999999999864
No 83
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=90.85 E-value=0.072 Score=39.86 Aligned_cols=51 Identities=10% Similarity=0.070 Sum_probs=40.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 236 FRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 236 ~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
.|+.+++++.+.+..+.+++-...... ..++||..+||++..|.-|..+.+
T Consensus 2 ~~~~~~~~~~~~~~~~g~~l~~~R~~~---sq~~lA~~~gis~~~is~~E~g~~ 52 (86)
T 2ofy_A 2 VRVPLTAEELERGQRLGELLRSARGDM---SMVTVAFDAGISVETLRKIETGRI 52 (86)
T ss_dssp -CCCCCHHHHHHHHHHHHHHHHHHTTS---CHHHHHHHHTCCHHHHHHHHTTCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHC---CHHHHHHHhCCCHHHHHHHHcCCC
Confidence 378899999999988888874322222 567999999999999999998754
No 84
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=90.53 E-value=0.077 Score=35.44 Aligned_cols=42 Identities=12% Similarity=0.239 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 239 KFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 239 kFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
+|+.+|++.+..+.+ .|| .+.++|.++||++.+|..|+....
T Consensus 5 ~~~~~~~~~i~~l~~-~g~--------s~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 5 AINKHEQEQISRLLE-KGH--------PRQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp SSCTTHHHHHHHHHH-TTC--------CHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred CCCHHHHHHHHHHHH-cCC--------CHHHHHHHHCCCHHHHHHHHHHcc
Confidence 678888888777654 342 467999999999999999997544
No 85
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=90.47 E-value=0.14 Score=33.42 Aligned_cols=43 Identities=12% Similarity=0.334 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 238 TKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 238 TkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
.+++.++++++..+.+ .|+ .+.++|.++||++.+|+.|+..-+
T Consensus 4 ~~l~~~~~~~i~~~~~-~g~--------s~~~IA~~lgis~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 4 SALSDTERAQLDVMKL-LNV--------SLHEMSRKISRSRHCIRVYLKDPV 46 (51)
T ss_dssp CCCCHHHHHHHHHHHH-TTC--------CHHHHHHHHTCCHHHHHHHHHCST
T ss_pred CCCCHHHHHHHHHHHH-cCC--------CHHHHHHHHCcCHHHHHHHHhhHH
Confidence 3688999987777653 342 367999999999999999996543
No 86
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=89.15 E-value=0.23 Score=39.09 Aligned_cols=51 Identities=14% Similarity=0.329 Sum_probs=36.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccc
Q 016972 237 RTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNN 288 (379)
Q Consensus 237 RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNn 288 (379)
|.+||.|+|..+...+...|+... -....+.++|.++||++.+|..|..--
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~-s~g~s~~~va~~~gIs~~tl~~W~~~~ 54 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYD-SQWATICSIAPKIGCTPETLRVWVRQH 54 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccc-cccccHHHHHHHHCcCHHHHHHHHHHH
Confidence 457999999988876644321000 001478899999999999999998643
No 87
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=86.06 E-value=0.11 Score=44.51 Aligned_cols=53 Identities=8% Similarity=-0.022 Sum_probs=34.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 236 FRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 236 ~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
.|.+=..+-++++++.|.++=++ +.-+...++++|++.||++.+|-.+|.|..
T Consensus 36 ~~~~r~~~~r~~Il~aA~~l~~~-~G~~~~tv~~IA~~AGvs~~t~Y~~F~sKe 88 (229)
T 3bni_A 36 PVQRRSAERLTRILDACADLLDE-VGYDALSTRAVALRADVPIGSVYRFFGNKR 88 (229)
T ss_dssp ----CHHHHHHHHHHHHHHHHHH-HCTTTCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred chhhhHHHHHHHHHHHHHHHHHh-cChhhccHHHHHHHHCCCchhHHHHcCCHH
Confidence 33333456667777655554111 123456889999999999999999998754
No 88
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=84.40 E-value=0.22 Score=43.74 Aligned_cols=51 Identities=10% Similarity=0.070 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 238 TKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 238 TkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
.++|.+|++.|+.+.+++--.+..... ..++||+.+||++..|.-|..+.+
T Consensus 5 ~~lt~~~~~~~~~~~~~l~~~r~~~g~-t~~~lA~~~gis~~~i~~~~~g~~ 55 (236)
T 3bdn_A 5 KPLTQEQLEDARRLKAIYEKKKNELGL-SQESVADKMGMGQSGVGALFNGIN 55 (236)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHTTTTTC-CSHHHHHHHTSCHHHHHHHTTTTS
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 357899998877777776433333322 567999999999999999998754
No 89
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=83.80 E-value=0.61 Score=36.13 Aligned_cols=43 Identities=12% Similarity=0.190 Sum_probs=35.5
Q ss_pred CCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 238 TKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 238 TkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
.+||.|++.++..+++ .||. +.++|.++||++.+|..|+..-+
T Consensus 16 ~~~s~~~r~~i~~~~~-~g~s--------~~~ia~~lgis~~Tv~~w~~~~~ 58 (128)
T 1pdn_C 16 RPLPNNIRLKIVEMAA-DGIR--------PCVISRQLRVSHGCVSKILNRYQ 58 (128)
T ss_dssp SCCCHHHHHHHHHHHH-TTCC--------HHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHH-cCCC--------HHHHHHHHCcCHHHHHHHHHHHH
Confidence 3699999999998875 5643 46899999999999999997644
No 90
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=83.33 E-value=0.65 Score=39.12 Aligned_cols=52 Identities=10% Similarity=0.203 Sum_probs=38.3
Q ss_pred CCCCCCCCHHHHHHHHHHH-HHhCccCCCCCHH-HHHHHHHHh--CCCCceeeeeccccc
Q 016972 234 KRFRTKFSQSQKEKMFEFA-ERVGWKMQKRDDD-LVHEFCNEV--GVDRTVLKVWMHNNK 289 (379)
Q Consensus 234 KR~RTkFT~EQkekM~~fa-Ek~GWRIqk~d~~-~vq~fc~ei--Gv~r~V~KVWfhNnK 289 (379)
||.|+.+|-|||.+|.+++ +..+ ..... +.+-|-.+. ||++.+|.-|+.|..
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~----~~~q~~la~wa~~~f~~~is~stis~ilk~k~ 61 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQN----RSGQQDLIEWFREKFGKDISQPSVSQILSSKY 61 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSS----CCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHCCCCcHHHHHHHHhhHH
Confidence 7899999999999999999 5554 33332 222233377 899999999997644
No 91
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=82.42 E-value=0.98 Score=37.63 Aligned_cols=43 Identities=7% Similarity=0.171 Sum_probs=35.6
Q ss_pred CCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 238 TKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 238 TkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
.+||.|++.++..+++ .|| .+.++|+++||++.+|..|+...+
T Consensus 24 ~~~s~e~r~~ii~l~~-~G~--------s~~~IA~~lgis~~TV~rwl~r~~ 66 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAH-QGV--------RPCDISRQLRVSHGCVSKILGRYY 66 (159)
T ss_dssp CSSCHHHHHHHHHHHH-HTC--------CHHHHHHHHTCCSHHHHHHHCCSS
T ss_pred CCCCHHHHHHHHHHHH-cCC--------CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4799999999998874 453 356899999999999999997654
No 92
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=82.00 E-value=0.21 Score=38.18 Aligned_cols=51 Identities=8% Similarity=0.135 Sum_probs=40.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCC
Q 016972 236 FRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRD 296 (379)
Q Consensus 236 ~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~ 296 (379)
.-.++|+.|++.|.-+++ | ...+++|+++||++.+|+.++++-+.+++...
T Consensus 18 ~~~~Lt~~e~~vl~l~~~--g--------~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 68 (82)
T 1je8_A 18 DVNQLTPRERDILKLIAQ--G--------LPNKMIARRLDITESTVKVHVKHMLKKMKLKS 68 (82)
T ss_dssp CGGGSCHHHHHHHHHHTT--T--------CCHHHHHHHHTSCHHHHHHHHHHHHHHTTCSS
T ss_pred HHccCCHHHHHHHHHHHc--C--------CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 334689999999887643 2 14579999999999999999999998887653
No 93
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=81.69 E-value=0.78 Score=37.66 Aligned_cols=43 Identities=9% Similarity=0.210 Sum_probs=36.0
Q ss_pred CCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 238 TKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 238 TkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
.+||.|++.++...++ .||. +.++|+++||++.+|..|+...+
T Consensus 31 ~~~s~e~r~~iv~~~~-~G~s--------~~~iA~~lgis~~TV~rw~~~~~ 73 (149)
T 1k78_A 31 RPLPDVVRQRIVELAH-QGVR--------PCDISRQLRVSHGCVSKILGRYY 73 (149)
T ss_dssp SCCCHHHHHHHHHHHH-TTCC--------HHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cCCC--------HHHHHHHHCcCHHHHHHHHHHHH
Confidence 4799999999998874 5642 56899999999999999998654
No 94
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=80.99 E-value=0.72 Score=36.75 Aligned_cols=43 Identities=12% Similarity=0.334 Sum_probs=35.6
Q ss_pred CCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 238 TKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 238 TkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
.+||.+++.++..+++ .|| .+.++|+.+||++.+|.-|+...+
T Consensus 5 ~~~s~~~r~~i~~~~~-~G~--------s~~~ia~~lgis~~Tv~r~~~~~~ 47 (141)
T 1u78_A 5 SALSDTERAQLDVMKL-LNV--------SLHEMSRKISRSRHCIRVYLKDPV 47 (141)
T ss_dssp CCCCHHHHHHHHHHHH-TTC--------CHHHHHHHHTCCHHHHHHHHHSGG
T ss_pred ccCCHHHHHHHHHHHH-cCC--------CHHHHHHHHCcCHHHHHHHHHccc
Confidence 5799999999988874 563 257899999999999999998654
No 95
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=79.19 E-value=0.42 Score=37.51 Aligned_cols=50 Identities=4% Similarity=0.099 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCC
Q 016972 238 TKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRDL 297 (379)
Q Consensus 238 TkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~~ 297 (379)
.++|+.|++.|.-+++-. ..+++|+++||++.+|+.++++-+.+++....
T Consensus 26 ~~Lt~~e~~vl~l~~~g~----------s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~ 75 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEGL----------TNKQIADRMFLAEKTVKNYVSRLLAKLGMERR 75 (95)
T ss_dssp -CCCHHHHHHHHHHHTTC----------CHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred hcCCHHHHHHHHHHHcCC----------CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCH
Confidence 468999999998874332 34799999999999999999999999877653
No 96
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=78.98 E-value=0.22 Score=37.01 Aligned_cols=49 Identities=10% Similarity=0.097 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 240 FSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 240 FT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
+|.||++.+..+.+++--.+.... -..++||..+||++..|.-|..+.+
T Consensus 2 lt~~~~~~~~~l~~~l~~~r~~~g-ltq~~lA~~~gvs~~~is~~e~g~~ 50 (80)
T 3kz3_A 2 LTQEQLEDARRLKAIWEKKKNELG-LSYESVADKMGMGQSAVAALFNGIN 50 (80)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHT-CCHHHHHHHTTSCHHHHHHHHTTSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHhCcCHHHHHHHHcCCC
Confidence 688888888877776531111111 1346899999999999999997654
No 97
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=77.67 E-value=0.53 Score=39.28 Aligned_cols=48 Identities=8% Similarity=0.039 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccc
Q 016972 242 QSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKS 290 (379)
Q Consensus 242 ~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~ 290 (379)
.+-++++++.|.++=++ +.-+...++++|++.||++.+|-.+|.|...
T Consensus 27 ~~~r~~Il~aa~~lf~~-~G~~~~tv~~IA~~agvs~~t~Y~~F~sK~~ 74 (215)
T 2qko_A 27 PERRAALVNAAIEVLAR-EGARGLTFRAVDVEANVPKGTASNYFPSRDD 74 (215)
T ss_dssp CHHHHHHHHHHHHHHHH-TCTTTCCHHHHHHHSSSTTTCHHHHCSCHHH
T ss_pred HHHHHHHHHHHHHHHHH-hChhhccHHHHHHHcCCCcchHHHhCCCHHH
Confidence 45556666655554222 1234568999999999999999999988544
No 98
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.37 E-value=0.95 Score=35.75 Aligned_cols=37 Identities=3% Similarity=0.129 Sum_probs=33.4
Q ss_pred HHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecc
Q 016972 246 EKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMH 286 (379)
Q Consensus 246 ekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfh 286 (379)
+.|++++.+-. ...++.+++||.+.+++-+.+|.||-
T Consensus 19 e~L~~Yy~~hk----~L~EeDl~~L~~kskms~qqvkdwFa 55 (70)
T 2ys9_A 19 QPLERYWAAHQ----QLRETDIPQLSQASRLSTQQVLDWFD 55 (70)
T ss_dssp HHHHHHHHHTC----CCCTTHHHHHHHHTTCCHHHHHHHHH
T ss_pred hHHHHHHHHhc----ccchhhHHHHHHHhCCCHHHHHHHHH
Confidence 67899988874 78888999999999999999999994
No 99
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=76.17 E-value=0.4 Score=42.50 Aligned_cols=56 Identities=21% Similarity=0.411 Sum_probs=40.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCccCCCCC-HHHHHHHHHHhCCCCceeeeecccccc
Q 016972 234 KRFRTKFSQSQKEKMFEFAERVGWKMQKRD-DDLVHEFCNEVGVDRTVLKVWMHNNKS 290 (379)
Q Consensus 234 KR~RTkFT~EQkekM~~faEk~GWRIqk~d-~~~vq~fc~eiGv~r~V~KVWfhNnK~ 290 (379)
+..|-+||.|+|+.+..++++- +-....+ .-.++++|+++||++.+|--|....+.
T Consensus 18 ~~~~r~yt~EfK~aAv~l~~~~-~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k~~p~ 74 (155)
T 2ao9_A 18 DELKQKLTAKQIQAAYLLVENE-LMESNNEEKRTQDEMANELGINRTTLWEWRTKNQD 74 (155)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHH-HCC---CCCCCHHHHHHHHTCCHHHHHHHHHHCHH
T ss_pred hHhhhhcCHHHHHHHHHHHHcc-ccccccccCCCHHHHHHHhCCCHHHHHHHHHcCcc
Confidence 4446679999999998887652 1111111 247899999999999999999886544
No 100
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=75.91 E-value=0.44 Score=40.25 Aligned_cols=43 Identities=12% Similarity=0.459 Sum_probs=34.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCC-CCceeeeecccc
Q 016972 237 RTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGV-DRTVLKVWMHNN 288 (379)
Q Consensus 237 RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv-~r~V~KVWfhNn 288 (379)
-||||+|..+++.+... .| ..+.++|...|| ++.+|--|++.+
T Consensus 10 Ptk~t~e~~e~I~~~i~-~G--------~sl~~i~~~~~~ps~~T~~~W~~~~ 53 (140)
T 4dyq_A 10 PSDYMPEVADDICSLLS-SG--------ESLLKVCKRPGMPDKSTVFRWLAKH 53 (140)
T ss_dssp CCSCCTTHHHHHHHHHH-TT--------CCHHHHHTSTTCCCHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHH-CC--------CcHHHHHhcCCCCCHHHHHHHHHcC
Confidence 38999999888777654 23 356799999999 899999999875
No 101
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=75.76 E-value=0.55 Score=40.17 Aligned_cols=48 Identities=13% Similarity=0.266 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 241 SQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 241 T~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
..+-++++++.|.++ ..-+.-+...++++|++.||++.+|-..|.|..
T Consensus 42 ~~~~r~~Il~aA~~l-f~e~G~~~~t~~~IA~~aGvs~~tlY~~F~sK~ 89 (236)
T 3q0w_A 42 GDDRELAILATAENL-LEDRPLADISVDDLAKGAGISRPTFYFYFPSKE 89 (236)
T ss_dssp CHHHHHHHHHHHHHH-HHHSCGGGCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred hHHHHHHHHHHHHHH-HHHcCcccCCHHHHHHHhCCcHHHHHHHCCCHH
Confidence 455666777666555 111234456899999999999999999988654
No 102
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=75.14 E-value=0.33 Score=37.41 Aligned_cols=50 Identities=16% Similarity=0.209 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCC
Q 016972 237 RTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRD 296 (379)
Q Consensus 237 RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~ 296 (379)
-.++|+.|++.|.-+++ | +. .+++|..+||++.+++.++++-+.+++.+.
T Consensus 27 l~~Lt~~e~~vl~l~~~--g----~s----~~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 76 (91)
T 2rnj_A 27 YEMLTEREMEILLLIAK--G----YS----NQEIASASHITIKTVKTHVSNILSKLEVQD 76 (91)
T ss_dssp GGGCCSHHHHHHHHHHT--T----CC----TTHHHHHHTCCHHHHHHHHHHHHHHTTCCS
T ss_pred HhcCCHHHHHHHHHHHc--C----CC----HHHHHHHHCcCHHHHHHHHHHHHHHHCCCC
Confidence 35689999999988643 3 22 258999999999999999999998887653
No 103
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=75.14 E-value=0.8 Score=36.84 Aligned_cols=48 Identities=19% Similarity=0.279 Sum_probs=39.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCC
Q 016972 237 RTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAK 294 (379)
Q Consensus 237 RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k 294 (379)
..+||+.|++.|.-+++ |+ ..+++|.++||++.+|+.++++-+.+++-
T Consensus 32 ~~~Lt~re~~Vl~l~~~--G~--------s~~EIA~~L~iS~~TV~~~l~ri~~KLgv 79 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAE--GF--------LVTEIAKKLNRSIKTISSQKKSAMMKLGV 79 (99)
T ss_dssp SSSCCHHHHHHHHHHHH--TC--------CHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred cCCCCHHHHHHHHHHHc--CC--------CHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 46799999999988764 42 23799999999999999999988877754
No 104
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=75.08 E-value=0.41 Score=34.53 Aligned_cols=50 Identities=10% Similarity=0.204 Sum_probs=39.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCC
Q 016972 236 FRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKR 295 (379)
Q Consensus 236 ~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~ 295 (379)
.-.++|+.|++.|.-+++ | + ..+++|+++||++.+++.+++.-+.+++..
T Consensus 8 ~~~~L~~~e~~il~~~~~--g----~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~~ 57 (74)
T 1fse_A 8 SKPLLTKREREVFELLVQ--D----K----TTKEIASELFISEKTVRNHISNAMQKLGVK 57 (74)
T ss_dssp CCCCCCHHHHHHHHHHTT--T----C----CHHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCCCCHHHHHHHHHHHc--C----C----CHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
Confidence 345699999999888632 3 1 457999999999999999999877777543
No 105
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=74.80 E-value=0.55 Score=38.11 Aligned_cols=47 Identities=13% Similarity=0.145 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 242 QSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 242 ~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
.+-++++.+.|.++=++ +.-+...++++|++.||++.+|-..|.|..
T Consensus 16 ~~~r~~Il~aa~~lf~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~ 62 (208)
T 3cwr_A 16 AVVRESIVGAAQRLLSS-GGAAAMTMEGVASEAGIAKKTLYRFASGRA 62 (208)
T ss_dssp HHHHHHHHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHHHHHHH-cCHHhccHHHHHHHhCCCHHHHHHHcCCHH
Confidence 66677777766555211 123456889999999999999999998754
No 106
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=74.54 E-value=0.56 Score=38.49 Aligned_cols=48 Identities=4% Similarity=0.243 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 241 SQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 241 T~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
..+-++++++.|.++=++ +.-+...++++|++.||++.+|-.+|.|..
T Consensus 29 ~~~~r~~Il~aa~~l~~~-~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~ 76 (218)
T 3dcf_A 29 GNDRRTQIIKVATELFRE-KGYYATSLDDIADRIGFTKPAIYYYFKSKE 76 (218)
T ss_dssp -CHHHHHHHHHHHHHHHH-TCTTTCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred ccchHHHHHHHHHHHHHH-cCcccCcHHHHHHHhCCCHHHHHHHcCCHH
Confidence 345566666655554111 123456899999999999999999998754
No 107
>2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=74.24 E-value=0.84 Score=37.99 Aligned_cols=49 Identities=12% Similarity=0.214 Sum_probs=8.8
Q ss_pred CHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccc
Q 016972 241 SQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKS 290 (379)
Q Consensus 241 T~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~ 290 (379)
..+-++++++.|.++=++ +.-+...++++|++.||++.+|-.+|.|.-.
T Consensus 28 ~~~~r~~Il~aa~~l~~~-~G~~~~ti~~IA~~agvs~~t~Y~~F~sK~~ 76 (212)
T 2np3_A 28 ETRTREAILTAARVCFAE-RGFDATSLRRIAETAGVDQSLVHHFYGTKEN 76 (212)
T ss_dssp -------CHHHHHHHC----------------------------CCC-CH
T ss_pred cHHHHHHHHHHHHHHHHH-cCcccccHHHHHHHcCCCHHHHHHHhCCHHH
Confidence 345566667666665222 2245568999999999999999999976543
No 108
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=74.11 E-value=0.22 Score=38.45 Aligned_cols=47 Identities=9% Similarity=0.209 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHH-HHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCC
Q 016972 239 KFSQSQKEKMFE-FAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKR 295 (379)
Q Consensus 239 kFT~EQkekM~~-faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~ 295 (379)
+++..|++.|.- |++-+ ..+++|..+||++.+|+++++.-|.++++.
T Consensus 37 ~L~~~~r~vl~l~~~~g~----------s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 84 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGW----------STAQIATDLGIAEGTVKSRLHYAVRALRLT 84 (92)
T ss_dssp TSCHHHHHHHHHHHTSCC----------CHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC----------CHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 477888888876 43322 468999999999999999999988877653
No 109
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=72.50 E-value=0.46 Score=34.92 Aligned_cols=47 Identities=9% Similarity=0.199 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCC
Q 016972 239 KFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKR 295 (379)
Q Consensus 239 kFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~ 295 (379)
+||+.|++.|.-+++ |+ ..+++|+++||++.+++.+++.-+.+++..
T Consensus 16 ~L~~~e~~vl~l~~~--g~--------s~~eIA~~l~is~~tV~~~~~r~~~kl~~~ 62 (79)
T 1x3u_A 16 TLSERERQVLSAVVA--GL--------PNKSIAYDLDISPRTVEVHRANVMAKMKAK 62 (79)
T ss_dssp HHCHHHHHHHHHHTT--TC--------CHHHHHHHTTSCHHHHHHHHHHHHHHTTCC
T ss_pred hCCHHHHHHHHHHHc--CC--------CHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 478889888877632 31 346999999999999999999999888764
No 110
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=71.54 E-value=1.9 Score=36.59 Aligned_cols=40 Identities=8% Similarity=0.157 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 245 KEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 245 kekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
++...+.|.+.| + +...++++|++.||++.+|-..|.|..
T Consensus 36 l~aA~~lf~~~G----~-~~~t~~~IA~~Agvs~~t~Y~~F~sKe 75 (230)
T 2iai_A 36 LSVAVQVFIERG----Y-DGTSMEHLSKAAGISKSSIYHHVTGKE 75 (230)
T ss_dssp HHHHHHHHHHHC----T-TTCCHHHHHHHHTSCHHHHTTTCSSHH
T ss_pred HHHHHHHHHHcC----c-cccCHHHHHHHHCCChhHHHHhCCCHH
Confidence 334444444545 3 445789999999999999998887653
No 111
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=70.42 E-value=0.84 Score=33.18 Aligned_cols=53 Identities=8% Similarity=-0.009 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCC
Q 016972 239 KFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRD 296 (379)
Q Consensus 239 kFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~ 296 (379)
++++.|++.|.-.+--.+ -+....+++|..+||++.+++.+++.-+.++++..
T Consensus 5 ~L~~~er~il~l~~~l~~-----~~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~ 57 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDM-----NTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 57 (68)
T ss_dssp CCCHHHHHHHHHHTTTTS-----SSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSCC
T ss_pred cCCHHHHHHHHHHHccCC-----CCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 578899998877641100 12235689999999999999999999999887654
No 112
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=70.29 E-value=0.95 Score=37.33 Aligned_cols=47 Identities=11% Similarity=0.227 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 242 QSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 242 ~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
.+-++++++.|.++=++ +.-+...++++|++.||++.+|-..|.|..
T Consensus 16 ~~~r~~Il~aA~~l~~~-~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~ 62 (218)
T 3gzi_A 16 TQNRDKLILAARNLFIE-RPYAQVSIREIASLAGTDPGLIRYYFGSKE 62 (218)
T ss_dssp HHHHHHHHHHHHHHHHT-SCCSCCCHHHHHHHHTSCTHHHHHHHSSHH
T ss_pred hHHHHHHHHHHHHHHHH-CCCCcCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 56778888877776222 234456889999999999999999887754
No 113
>3mb2_B 4-oxalocrotonate tautomerase family enzyme - beta; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=69.85 E-value=7.2 Score=30.96 Aligned_cols=40 Identities=15% Similarity=0.131 Sum_probs=31.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 233 RKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 233 kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
++|.|| .|||+++.+.+.+ .||+-+|++...++|-|.--+
T Consensus 9 ~~~pRT---~EQKralaeE~T~--------------if~evLGcpPgsV~IVi~EV~ 48 (72)
T 3mb2_B 9 GDRPPD---RTRKQAFAAEASA--------------IFQRVIGTPPGRLQLIIQIVS 48 (72)
T ss_dssp CSSCCC---HHHHHHHHHHHHH--------------HHHHHHCCCTTCCEEEEEECC
T ss_pred CCCCCC---HHHHHHHHHHHHH--------------HHHHHhCCCCCcEEEEEEecC
Confidence 356664 8999887665544 799999999999999997654
No 114
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=69.46 E-value=3 Score=33.10 Aligned_cols=45 Identities=9% Similarity=0.108 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhC--CCCceeeeecccccc
Q 016972 238 TKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVG--VDRTVLKVWMHNNKS 290 (379)
Q Consensus 238 TkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiG--v~r~V~KVWfhNnK~ 290 (379)
.+++.++++.+.++.+.-.|. .++++.++| |+..+|..|++...-
T Consensus 59 ~~l~~~~~~~i~~~~~~~~~s--------~~~i~~~lg~~~s~~tV~r~l~~~g~ 105 (141)
T 1u78_A 59 KALSVRDERNVIRAASNSCKT--------ARDIRNELQLSASKRTILNVIKRSGV 105 (141)
T ss_dssp CSSCHHHHHHHHHHHHHCCCC--------HHHHHHHTTCCSCHHHHHHHHHHTC-
T ss_pred CcCCHHHHHHHHHHHhCCCCC--------HHHHHHHHCCCccHHHHHHHHHHCCC
Confidence 468999999998884443342 367888888 788999999987654
No 115
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=69.16 E-value=6.7 Score=29.26 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=22.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC
Q 016972 232 GRKRFRTKFSQSQKEKMFEFAERVG 256 (379)
Q Consensus 232 ~kKR~RTkFT~EQkekM~~faEk~G 256 (379)
.+++.|..||+|+-++|+++.++.|
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G 29 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYG 29 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHC
Confidence 3578889999999999999999987
No 116
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=66.51 E-value=3.9 Score=30.51 Aligned_cols=43 Identities=12% Similarity=0.197 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHHHHHHh-------CccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 239 KFSQSQKEKMFEFAERV-------GWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 239 kFT~EQkekM~~faEk~-------GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
+++.++++....+.+.+ ||. .++||..+||++..|.-|..+.+
T Consensus 6 ~~~~~~~~~~~~l~~~l~~~R~~~gls--------q~~lA~~~gis~~~is~~e~g~~ 55 (92)
T 1lmb_3 6 PLTQEQLEDARRLKAIYEKKKNELGLS--------QESVADKMGMGQSGVGALFNGIN 55 (92)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTCC--------HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCC--------HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46677776544444433 432 47899999999999999998743
No 117
>3ej9_B Beta-subunit of trans-3-chloroacrylic acid dehalo; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej7_B 3ej3_B 1s0y_B
Probab=66.09 E-value=6.8 Score=30.96 Aligned_cols=35 Identities=14% Similarity=0.328 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 241 SQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 241 T~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
|.|||++|-+- +-+..|+-||++...+.||++--+
T Consensus 12 T~EQK~~lI~~--------------VT~a~~eslgap~esVrVlItE~p 46 (70)
T 3ej9_B 12 SVARKQQLIRD--------------VIDVTNKSIGSDPKIINVLLVEHA 46 (70)
T ss_dssp CHHHHHHHHHH--------------HHHHHHHHHCCCGGGCEEEEEEEC
T ss_pred CHHHHHHHHHH--------------HHHHHHHHcCCChHHEEEEeeeCC
Confidence 69999987653 567899999999999999998754
No 118
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=65.82 E-value=2.7 Score=29.11 Aligned_cols=36 Identities=14% Similarity=0.318 Sum_probs=26.5
Q ss_pred HHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 246 EKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 246 ekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
++|+.+-++.||. .++||+.+||++..|.-|..+.+
T Consensus 8 ~~l~~~r~~~g~s--------~~~lA~~~gis~~~i~~~e~g~~ 43 (68)
T 2r1j_L 8 ERIRARRKKLKIR--------QAALGKMVGVSNVAISQWERSET 43 (68)
T ss_dssp HHHHHHHHHHTCC--------HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHHcCCC--------HHHHHHHHCCCHHHHHHHHcCCC
Confidence 4566666666654 46889999999999988887643
No 119
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=65.75 E-value=1.5 Score=35.89 Aligned_cols=49 Identities=6% Similarity=0.207 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 240 FSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 240 FT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
..++-++++.+.|.++=++ +.-+...++++|++.||++.+|-..|.|..
T Consensus 10 ~~~~~r~~Il~aA~~lf~~-~G~~~~t~~~IA~~agvs~~tlY~~F~sK~ 58 (217)
T 3nrg_A 10 LPEEKRSRLIDVLLDEFAQ-NDYDSVSINRITERAGIAKGSFYQYFADKK 58 (217)
T ss_dssp SCHHHHHHHHHHHHHHHHH-SCGGGCCHHHHHHHHTCCTTGGGGTCSSHH
T ss_pred ChHHHHHHHHHHHHHHHHh-cCcccCCHHHHHHHhCCcHHHHHHHcCCHH
Confidence 3577788888877766222 234456899999999999999999998754
No 120
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=65.27 E-value=0.52 Score=33.61 Aligned_cols=48 Identities=6% Similarity=0.070 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHH-HHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCC
Q 016972 239 KFSQSQKEKMFEFA-ERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRD 296 (379)
Q Consensus 239 kFT~EQkekM~~fa-Ek~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~ 296 (379)
++++.|++.+.-.+ +. ...+++|..+||++.+++.|++.-+.++++.-
T Consensus 15 ~L~~~~r~il~l~~~~g----------~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l 63 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG----------LSYADAAAVCGCPVGTIRSRVARARDALLADA 63 (70)
T ss_dssp SSCHHHHHHHHHHHTSC----------CCHHHHHHHHTSCHHHHHHHHHHHHHHHHC--
T ss_pred hCCHHHHHHHHHHHHcC----------CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 57899998887643 22 13579999999999999999999998887654
No 121
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=65.20 E-value=8.7 Score=27.61 Aligned_cols=35 Identities=20% Similarity=0.382 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccc
Q 016972 240 FSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNN 288 (379)
Q Consensus 240 FT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNn 288 (379)
+|.|||++|-+- +.+.+++.+|+++..+-|.|+-.
T Consensus 10 rt~eqK~~L~~~--------------it~~~~~~lg~~~~~v~V~i~E~ 44 (62)
T 3m20_A 10 LDVGKKREFVER--------------LTSVAAEIYGMDRSAITILIHEP 44 (62)
T ss_dssp CCHHHHHHHHHH--------------HHHHHHHHHTCCTTSCEEEEECC
T ss_pred CCHHHHHHHHHH--------------HHHHHHHHhCcCcceEEEEEEEe
Confidence 589999887653 45678899999999998888765
No 122
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=65.03 E-value=1.7 Score=35.11 Aligned_cols=47 Identities=11% Similarity=0.053 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 242 QSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 242 ~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
.+-++++++.|.++=++- .-+...++++|++.||++.+|-..|.|..
T Consensus 16 ~~~r~~Il~aa~~l~~~~-G~~~~s~~~Ia~~agvs~~t~Y~~F~sK~ 62 (206)
T 3kz9_A 16 LKRKQQLMEIALEVFARR-GIGRGGHADIAEIAQVSVATVFNYFPTRE 62 (206)
T ss_dssp HHHHHHHHHHHHHHHHHS-CCSSCCHHHHHHHHTSCHHHHHHHCCSHH
T ss_pred HHHHHHHHHHHHHHHHhc-CcccccHHHHHHHhCCCHHHHHHHcCCHH
Confidence 344567777666652222 23445889999999999999999998753
No 123
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=64.54 E-value=1.5 Score=39.54 Aligned_cols=50 Identities=12% Similarity=0.118 Sum_probs=41.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCC
Q 016972 237 RTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRD 296 (379)
Q Consensus 237 RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~ 296 (379)
..+|++.|++.|.-+++-+ ..+++|..+||+..++|+.+++-|.+++...
T Consensus 195 ~~~L~~~erevl~L~~~G~----------s~~EIA~~L~iS~~TVk~~l~ra~~kL~~~~ 244 (258)
T 3clo_A 195 RNILSEREKEILRCIRKGL----------SSKEIAATLYISVNTVNRHRQNILEKLSVGN 244 (258)
T ss_dssp TTSSCHHHHHHHHHHHTTC----------CHHHHHHHHTCCHHHHHHHHHHHHHHTTCSS
T ss_pred HccCCHHHHHHHHHHHcCC----------CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 3679999999988874332 4579999999999999999999999997753
No 124
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=63.26 E-value=1.3 Score=36.52 Aligned_cols=48 Identities=8% Similarity=0.023 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccc
Q 016972 242 QSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKS 290 (379)
Q Consensus 242 ~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~ 290 (379)
.+-++++++.|.++=++ +.-+...++++|++.||++.+|-.+|.|...
T Consensus 29 ~~~r~~Il~aA~~l~~~-~G~~~~t~~~IA~~aGvs~~t~Y~~F~sK~~ 76 (222)
T 3bru_A 29 SLAHQSLIRAGLEHLTE-KGYSSVGVDEILKAARVPKGSFYHYFRNKAD 76 (222)
T ss_dssp GGHHHHHHHHHHHHHHH-SCTTTCCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred hhHHHHHHHHHHHHHHH-cCCCcCcHHHHHHHhCCCcchhhhhCCCHHH
Confidence 44566666655554222 2244568999999999999999999988543
No 125
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=63.21 E-value=3.2 Score=29.05 Aligned_cols=37 Identities=11% Similarity=0.153 Sum_probs=27.5
Q ss_pred HHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccc
Q 016972 246 EKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKS 290 (379)
Q Consensus 246 ekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~ 290 (379)
++|+.+-++.||. .++||..+||++..|.-|..+.+.
T Consensus 6 ~~l~~~r~~~gls--------q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 6 ERLKKRRIALKMT--------QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHHTTCC--------HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHHHcCCC--------HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 4566666666653 468999999999999999877543
No 126
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=62.32 E-value=1.6 Score=34.33 Aligned_cols=48 Identities=6% Similarity=0.068 Sum_probs=38.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCC
Q 016972 237 RTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAK 294 (379)
Q Consensus 237 RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k 294 (379)
.-.||..|++.|.-++ .| + ..+++|.++||+.++|+..+.+-+.|++-
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G----~----s~~eIA~~L~iS~~TV~~~~~~i~~Klgv 74 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KG----F----TNQEIADALHLSKRSIEYSLTSIFNKLNV 74 (90)
T ss_dssp --CCCHHHHHHHHHHH--TT----C----CHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred ccCCCHHHHHHHHHHH--cC----C----CHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 3468999999998887 44 2 35799999999999999999988877753
No 127
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=62.30 E-value=1.1 Score=37.23 Aligned_cols=48 Identities=10% Similarity=0.188 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccc
Q 016972 242 QSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKS 290 (379)
Q Consensus 242 ~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~ 290 (379)
.+-++++++.|.++=++ +.-+...++++|++.||++.+|-..|.|...
T Consensus 22 ~~~r~~Il~aA~~lf~~-~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~ 69 (214)
T 2zb9_A 22 EEVRAEVLHAVGELLLT-EGTAQLTFERVARVSGVSKTTLYKWWPSKGA 69 (214)
T ss_dssp HHHHHHHHHHHHHHHHH-HCGGGCCHHHHHHHHCCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHHHHHHHH-hCcccCCHHHHHHHHCCCHHHHHHHCCCHHH
Confidence 34366666655544111 1234568899999999999999998877543
No 128
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=61.70 E-value=1.6 Score=36.58 Aligned_cols=56 Identities=18% Similarity=0.087 Sum_probs=34.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 233 RKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 233 kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
+|+.+-.=..+-++++++.|.++=|+-. -+...++++|++.||++.+|-..|.|..
T Consensus 14 r~~~~~~r~~~~r~~Il~aA~~lf~e~G-~~~~s~~~IA~~aGvskgtlY~yF~sKe 69 (214)
T 2oer_A 14 RKQPQQARSSELVASILEAAVQVLASEG-AQRFTTARVAERAGVSIGSLYQYFPNKA 69 (214)
T ss_dssp ---------CHHHHHHHHHHHHC-------CCCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHhhC-cccccHHHHHHHhCCCCchHHHhCCCHH
Confidence 3333333345667888888877743322 3456899999999999999999988754
No 129
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=61.45 E-value=0.56 Score=37.56 Aligned_cols=47 Identities=13% Similarity=0.124 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCC
Q 016972 239 KFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKR 295 (379)
Q Consensus 239 kFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~ 295 (379)
++++.|++.|.-+++ | -..+++|..+||++.+++.+++.-|.++++.
T Consensus 109 ~L~~~~r~v~~~~~~--g--------~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~ 155 (164)
T 3mzy_A 109 NFSKFEKEVLTYLIR--G--------YSYREIATILSKNLKSIDNTIQRIRKKSEEW 155 (164)
T ss_dssp HSCHHHHHHHHHHTT--T--------CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHc--C--------CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 677888888873322 2 2457999999999999999999988877654
No 130
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=61.16 E-value=2.2 Score=34.62 Aligned_cols=46 Identities=7% Similarity=-0.031 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 243 SQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 243 EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
+-++++++.|.++=++- .-+...++++|++.||++.+|-..|.|..
T Consensus 16 ~~r~~Il~aa~~l~~~~-G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 61 (211)
T 3him_A 16 KAAARIRAAAIEVFAAK-GYGATTTREIAASLDMSPGAVYPHYKTKE 61 (211)
T ss_dssp HHHHHHHHHHHHHHHHH-CSTTCCHHHHHHHTTCCTTSSTTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHc-CCCcCCHHHHHHHhCCCcChhhhcCCCHH
Confidence 44555555444331111 23456889999999999999999998654
No 131
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=60.30 E-value=2 Score=37.07 Aligned_cols=48 Identities=13% Similarity=0.226 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 241 SQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 241 T~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
..+-++++++.|.++=++ +.-+...++++|++.||++.+|-..|.|..
T Consensus 41 ~~~~r~~Il~AA~~lf~~-~G~~~~t~~~IA~~aGvs~~tlY~~F~sK~ 88 (255)
T 3g1o_A 41 GDDRELAILATAENLLED-RPLADISVDDLAKGAGISRPTFYFYFPSKE 88 (255)
T ss_dssp CCHHHHHHHHHHHHHHTT-SCGGGCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHHHHHHHH-cCCccCcHHHHHHHhCCCHHHHHHHcCCHH
Confidence 345566667666665222 223456899999999999999999998754
No 132
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=60.10 E-value=4 Score=28.41 Aligned_cols=37 Identities=11% Similarity=0.213 Sum_probs=27.1
Q ss_pred HHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccc
Q 016972 246 EKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKS 290 (379)
Q Consensus 246 ekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~ 290 (379)
++|+++-++.||. .++||..+||++..|.-|..+.+.
T Consensus 4 ~~l~~~r~~~gls--------q~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 4 SRVKSKRIQLGLN--------QAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp HHHHHHHHHTTCC--------HHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred HHHHHHHHHcCCC--------HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 4556666666643 468999999999999999876543
No 133
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=60.08 E-value=1.4 Score=37.52 Aligned_cols=48 Identities=8% Similarity=0.200 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccc
Q 016972 242 QSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKS 290 (379)
Q Consensus 242 ~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~ 290 (379)
.+-++++++.|.++=++ +.-+...++++|++.||++.+|-..|.|...
T Consensus 38 ~~~r~~Il~AA~~lf~e-~G~~~~tv~~IA~~AGvs~~tlY~~F~sKe~ 85 (214)
T 2guh_A 38 EQSRSLIVDAAGRAFAT-RPYREITLKDIAEDAGVSAPLIIKYFGSKEQ 85 (214)
T ss_dssp HHHHHHHHHHHHHHHHH-SCGGGCCHHHHHHHHTSCHHHHHHHHSSHHH
T ss_pred hhHHHHHHHHHHHHHHH-cChhhcCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 34455555544444222 1234568899999999999999999877543
No 134
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=59.85 E-value=12 Score=27.09 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=28.7
Q ss_pred CCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccc
Q 016972 239 KFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNN 288 (379)
Q Consensus 239 kFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNn 288 (379)
.+|.|||++|-+. +.+.+++.+|+++..+-|.|+-.
T Consensus 13 grs~eqK~~l~~~--------------lt~~l~~~lg~p~~~v~V~i~e~ 48 (67)
T 3m21_A 13 GPTNEQKQQLIEG--------------VSDLMVKVLNKNKASIVVIIDEV 48 (67)
T ss_dssp BSCHHHHHHHHHH--------------HHHHHHHHHCCCGGGCEEEEEEC
T ss_pred CCCHHHHHHHHHH--------------HHHHHHHHHCcCcccEEEEEEEe
Confidence 4689999987664 44678899999999888887755
No 135
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=59.67 E-value=1.5 Score=35.47 Aligned_cols=47 Identities=9% Similarity=0.181 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 242 QSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 242 ~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
.+.++++.+.|.++=.+ +..+...++++|++.||++.+|-..|.|..
T Consensus 13 ~~~r~~Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~ 59 (203)
T 3f1b_A 13 AVREQQMLDAAVDVFSD-RGFHETSMDAIAAKAEISKPMLYLYYGSKD 59 (203)
T ss_dssp HHHHHHHHHHHHHHHHH-HCTTTCCHHHHHHHTTSCHHHHHHHCCSHH
T ss_pred HHHHHHHHHHHHHHHHH-cCcccccHHHHHHHhCCchHHHHHHhCCHH
Confidence 34456666544444111 123456889999999999999999987654
No 136
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=59.58 E-value=1.7 Score=35.67 Aligned_cols=47 Identities=9% Similarity=0.093 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 242 QSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 242 ~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
++-++++.+.|.++ ..-+.-+...++++|++.||++.+|-..|.|..
T Consensus 18 ~~~r~~Il~aA~~l-f~~~G~~~~t~~~IA~~agvs~~tlY~~F~sK~ 64 (216)
T 3qqa_A 18 LARQEKIKAVALEL-FLTKGYQETSLSDIIKLSGGSYSNIYDGFKSKE 64 (216)
T ss_dssp HHHHHHHHHHHHHH-HHHTCTTTCCHHHHHHHHTTSCCSSSCSCCSHH
T ss_pred HHHHHHHHHHHHHH-HHHcChhhCCHHHHHHHhCCCHHHHHHhcCCHH
Confidence 45566666665555 111234556899999999999999999997654
No 137
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=59.55 E-value=4.1 Score=28.91 Aligned_cols=36 Identities=14% Similarity=0.318 Sum_probs=24.2
Q ss_pred HHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 246 EKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 246 ekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
++|+.+-++.||. .++||+.+||++..|.-|..+.+
T Consensus 8 ~~l~~~r~~~gls--------~~~lA~~~gis~~~i~~~e~g~~ 43 (76)
T 1adr_A 8 ERIRARRKKLKIR--------QAALGKMVGVSNVAISQWERSET 43 (76)
T ss_dssp HHHHHHHHHHTCC--------HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHHcCCC--------HHHHHHHHCcCHHHHHHHHcCCC
Confidence 4455555566643 46788888888888888876643
No 138
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=59.22 E-value=0.1 Score=44.88 Aligned_cols=26 Identities=12% Similarity=-0.093 Sum_probs=16.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhC
Q 016972 231 GGRKRFRTKFSQSQKEKMFEFAERVG 256 (379)
Q Consensus 231 ~~kKR~RTkFT~EQkekM~~faEk~G 256 (379)
.+.||.||.||++|++.|++.|+...
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~ 159 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANP 159 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCC
Confidence 45699999999999999999877654
No 139
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=58.99 E-value=2.8 Score=34.48 Aligned_cols=46 Identities=9% Similarity=0.173 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 243 SQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 243 EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
+-++++++.|.++=++ +.-+...++++|++.||++.+|=..|.|..
T Consensus 14 ~~r~~Il~aA~~lf~~-~G~~~~s~~~Ia~~agvs~~t~Y~yF~sKe 59 (203)
T 3ccy_A 14 NIRDTIIERAAAMFAR-QGYSETSIGDIARACECSKSRLYHYFDSKE 59 (203)
T ss_dssp THHHHHHHHHHHHHHH-TCTTTSCHHHHHHHTTCCGGGGTTTCSCHH
T ss_pred hHHHHHHHHHHHHHHH-cCcccCCHHHHHHHhCCCcCeeeeeeCCHH
Confidence 4455566544444111 123456899999999999999999997643
No 140
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=58.85 E-value=1.9 Score=36.42 Aligned_cols=47 Identities=13% Similarity=0.183 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 242 QSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 242 ~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
.+-++++++.|.++=++ +.-+...++++|++.||++..|-.+|.|..
T Consensus 34 ~~~r~~Il~aA~~lf~~-~G~~~~t~~~IA~~AGvs~~tlY~~F~sKe 80 (221)
T 3g7r_A 34 SEARARLLGTATRIFYA-EGIHSVGIDRITAEAQVTRATLYRHFSGKD 80 (221)
T ss_dssp CHHHHHHHHHHHHHHHH-HCSTTSCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred hhHHHHHHHHHHHHHHH-hCcccCCHHHHHHHhCCCHHHHHHHCCCHH
Confidence 45566666654444111 123456889999999999999999998753
No 141
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=58.81 E-value=17 Score=29.79 Aligned_cols=43 Identities=16% Similarity=0.089 Sum_probs=31.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCc-cCCCCCHHHHHHHHHHhCCCC
Q 016972 236 FRTKFSQSQKEKMFEFAERVGW-KMQKRDDDLVHEFCNEVGVDR 278 (379)
Q Consensus 236 ~RTkFT~EQkekM~~faEk~GW-RIqk~d~~~vq~fc~eiGv~r 278 (379)
.|.++|++|++.|++.|...-. +-.+-+..++..+.+.+|+..
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~ 49 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVP 49 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCC
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCc
Confidence 4568999999999998887521 112667788888888888654
No 142
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=58.55 E-value=1.5 Score=35.90 Aligned_cols=47 Identities=13% Similarity=0.168 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccc
Q 016972 241 SQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNN 288 (379)
Q Consensus 241 T~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNn 288 (379)
..+-++++.+.|.++=++ +.-+...++++|++.||++.+|-..|.|.
T Consensus 24 ~~~~r~~Il~aA~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK 70 (217)
T 3mvp_A 24 SIEKRNKILQVAKDLFSD-KTYFNVTTNEIAKKADVSVGTLYAYFASK 70 (217)
T ss_dssp HHHHHHHHHHHHHHHHHH-HCGGGCCHHHHHHHHTSCHHHHHHHCSSH
T ss_pred chhHHHHHHHHHHHHHHH-cCccccCHHHHHHHhCCChhHHHHHcCCH
Confidence 455666666655554111 12455689999999999999999888774
No 143
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=57.43 E-value=1.6 Score=35.72 Aligned_cols=47 Identities=13% Similarity=0.132 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 242 QSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 242 ~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
.+-++++.+.|.++=++ +.-+...++++|++.||++.+|-..|.|..
T Consensus 17 ~~~r~~Il~aa~~l~~~-~G~~~~s~~~Ia~~agvs~~t~Y~~F~sK~ 63 (212)
T 1pb6_A 17 SAKKKAILSAALDTFSQ-FGFHGTRLEQIAELAGVSKTNLLYYFPSKE 63 (212)
T ss_dssp HHHHHHHHHHHHHHHHH-HCTTTCCHHHHHHHTTSCHHHHHHHSSSHH
T ss_pred HHHHHHHHHHHHHHHHH-cCcchhhHHHHHHHHCCChhHHHHhCCCHH
Confidence 45667777655554111 123455789999999999999999888753
No 144
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=57.16 E-value=1.5 Score=33.53 Aligned_cols=53 Identities=8% Similarity=-0.013 Sum_probs=39.8
Q ss_pred CCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCC
Q 016972 239 KFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRD 296 (379)
Q Consensus 239 kFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~ 296 (379)
++++.|++.+.-.+--. -.+.-..+++|..+||++.+++.|++.-+.++++..
T Consensus 18 ~L~~~er~vl~l~~~l~-----~~~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l 70 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLL-----DGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPS 70 (87)
T ss_dssp TSCHHHHHHHHHHHTTT-----TSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTTB
T ss_pred hCCHHHHHHHHHHHccC-----CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 57888998887754200 002235689999999999999999999998887654
No 145
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=57.00 E-value=1.3 Score=36.96 Aligned_cols=46 Identities=9% Similarity=0.272 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 242 QSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 242 ~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
.+-++++++.|.++=|+- . +...++++|++.||++.+|-.+|.|..
T Consensus 19 ~~~r~~Il~aA~~lf~~~-G-~~~s~~~IA~~aGvs~~tlY~~F~sK~ 64 (215)
T 2hku_A 19 RQTRDALFTAATELFLEH-G-EGVPITQICAAAGAHPNQVTYYYGSKE 64 (215)
T ss_dssp -CHHHHHHHHHHHHHHHH-C-TTSCHHHHHHHHTCCHHHHHHHHSSHH
T ss_pred HHHHHHHHHHHHHHHHHh-C-CCcCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 345566666555553433 4 778999999999999999999987754
No 146
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=56.14 E-value=2.6 Score=33.77 Aligned_cols=28 Identities=14% Similarity=0.247 Sum_probs=18.8
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 262 RDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 262 ~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
-+...++++|++.||++.+|-..|.|..
T Consensus 30 ~~~~t~~~IA~~agvs~~t~Y~~F~sK~ 57 (199)
T 3on2_A 30 VDGLSLRQLAREAGVSHAAPSKHFRDRQ 57 (199)
T ss_dssp GGGCCHHHHHHHTC-----CCCSSSSHH
T ss_pred hhhhhHHHHHHHhCCChHHHHHHhCCHH
Confidence 3445889999999999999999998753
No 147
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=55.43 E-value=2 Score=38.04 Aligned_cols=48 Identities=10% Similarity=0.215 Sum_probs=39.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCC
Q 016972 237 RTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAK 294 (379)
Q Consensus 237 RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k 294 (379)
...||+.|++.|.-+++ | +. .+++|+.+||+.++||.+++|-+.|++-
T Consensus 173 ~~~Lt~~e~~vl~~~~~--g----~s----~~eIa~~l~is~~tV~~~~~~~~~kl~~ 220 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASK--G----KT----ASVTANLTGINARTVQHYLDKARAKLDA 220 (236)
T ss_dssp GGSCCHHHHHHHHHHHT--T----CC----HHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred cCCCCHHHHHHHHHHHc--C----CC----HHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 56799999999877653 3 33 3699999999999999999998887753
No 148
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=55.40 E-value=18 Score=25.37 Aligned_cols=36 Identities=11% Similarity=0.108 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 240 FSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 240 FT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
+|.|||++|.+. +.+.+++.+|+++..+-|-|+...
T Consensus 12 ~s~eqk~~l~~~--------------lt~~l~~~lg~~~~~v~V~i~e~~ 47 (64)
T 3abf_A 12 RPPEKKRELVRR--------------LTEMASRLLGEPYEEVRVILYEVR 47 (64)
T ss_dssp CCHHHHHHHHHH--------------HHHHHHHHTTCCGGGEEEEEEEEC
T ss_pred CCHHHHHHHHHH--------------HHHHHHHHhCCCcccEEEEEEEcC
Confidence 479999886553 346788899999999998777654
No 149
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=55.26 E-value=15 Score=27.44 Aligned_cols=37 Identities=5% Similarity=0.152 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 239 KFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 239 kFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
+||.|||++|-+. +.+.+++.+|++...+-|.|+-..
T Consensus 11 rls~eqk~~L~~~--------------l~~~l~~~lgip~~~v~V~i~e~~ 47 (76)
T 1gyx_A 11 ELDEQQKAALAAD--------------ITDVIIRHLNSKDSSISIALQQIQ 47 (76)
T ss_dssp CCCHHHHHHHHHH--------------HHHHHHHHHTCCGGGCEEEEEECC
T ss_pred CCCHHHHHHHHHH--------------HHHHHHHHhCcCCceEEEEEEEeC
Confidence 4789999887654 445788889999988888776543
No 150
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=54.99 E-value=5.3 Score=29.00 Aligned_cols=34 Identities=15% Similarity=0.170 Sum_probs=19.9
Q ss_pred HHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccc
Q 016972 247 KMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNN 288 (379)
Q Consensus 247 kM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNn 288 (379)
+|+++-++.||. .++||+++||++.+|.-|..+.
T Consensus 6 ~lk~~r~~~gls--------q~~lA~~~gis~~~i~~~e~g~ 39 (77)
T 2k9q_A 6 ELKVERIRLSLT--------AKSVAEEMGISRQQLCNIEQSE 39 (77)
T ss_dssp HHHHHHHHHTCC--------HHHHHHHHTSCHHHHHHHHTCC
T ss_pred HHHHHHHHcCCC--------HHHHHHHhCCCHHHHHHHHcCC
Confidence 444454555533 3567777777777776666553
No 151
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=54.92 E-value=5.5 Score=28.43 Aligned_cols=37 Identities=8% Similarity=0.312 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 245 KEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 245 kekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
.++|+.+-++.||. .++||..+||++.+|.-|..+.+
T Consensus 9 ~~~l~~~r~~~g~s--------q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 9 SEHLMELITQQNLT--------INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHHHTTCC--------HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHHHcCCC--------HHHHHHHHCcCHHHHHHHHcCCC
Confidence 34555555555543 36788888888888888877654
No 152
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural GEN PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=54.79 E-value=1.9 Score=38.58 Aligned_cols=48 Identities=15% Similarity=0.185 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccc
Q 016972 242 QSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKS 290 (379)
Q Consensus 242 ~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~ 290 (379)
.+-++++++.|.++=|+ +.-+...++++|++.||++.+|-.+|.|...
T Consensus 40 ~~tr~~Il~AA~~lf~e-~G~~~~S~~~IA~~AGVs~~tlY~hF~sKe~ 87 (273)
T 3c07_A 40 EQTRALILETAMRLFQE-RGYDRTTMRAIAQEAGVSVGNAYYYFAGKEH 87 (273)
T ss_dssp HHHHHHHHHHHHHHHHH-TCSTTCCHHHHHHHHTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHHHHHHHh-CCccccCHHHHHHHHCCCHHHHHHHcCCHHH
Confidence 44566666655554222 1234558899999999999999999976543
No 153
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=54.36 E-value=5.8 Score=27.94 Aligned_cols=22 Identities=14% Similarity=0.110 Sum_probs=18.0
Q ss_pred HHHHHHHhCCCCceeeeecccc
Q 016972 267 VHEFCNEVGVDRTVLKVWMHNN 288 (379)
Q Consensus 267 vq~fc~eiGv~r~V~KVWfhNn 288 (379)
.++||+.+||++..|.-|..+.
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~ 50 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQ 50 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHCcCHHHHHHHHCCC
Confidence 4688889999988888888764
No 154
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=52.66 E-value=5 Score=27.60 Aligned_cols=39 Identities=18% Similarity=0.398 Sum_probs=30.1
Q ss_pred CCC--HHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecc
Q 016972 239 KFS--QSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMH 286 (379)
Q Consensus 239 kFT--~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfh 286 (379)
.++ .++.+.+..+.+ .|+ ...++|.++||++.+|+.|+.
T Consensus 13 ~l~~~~~~~~~i~~l~~-~g~--------s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 13 YVESEDDLVSVAHELAK-MGY--------TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp EECSHHHHHHHHHHHHH-TTC--------CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHH-cCC--------CHHHHHHHHCcCHHHHHHHHH
Confidence 577 788777777643 342 467999999999999999985
No 155
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=52.24 E-value=3.3 Score=29.50 Aligned_cols=20 Identities=15% Similarity=0.453 Sum_probs=9.7
Q ss_pred HHHHHHhCCCCceeeeeccc
Q 016972 268 HEFCNEVGVDRTVLKVWMHN 287 (379)
Q Consensus 268 q~fc~eiGv~r~V~KVWfhN 287 (379)
++||+.+||++.+|.-|..+
T Consensus 27 ~~lA~~~gis~~~i~~~e~g 46 (76)
T 3bs3_A 27 RWLAEQMGKSENTISRWCSN 46 (76)
T ss_dssp HHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHCcCHHHHHHHHcC
Confidence 34555555555555544443
No 156
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=52.17 E-value=2.4 Score=36.06 Aligned_cols=48 Identities=13% Similarity=0.285 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccc
Q 016972 242 QSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKS 290 (379)
Q Consensus 242 ~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~ 290 (379)
.+-++++++.|.++=++ +.-+...++++|++.||++.+|-.+|.|...
T Consensus 12 ~~~r~~Il~AA~~l~~~-~G~~~~tv~~IA~~agvs~~t~Y~~F~sK~~ 59 (231)
T 2qib_A 12 EERRQQLIGVALDLFSR-RSPDEVSIDEIASAAGISRPLVYHYFPGKLS 59 (231)
T ss_dssp HHHHHHHHHHHHHHHHH-SCGGGCCHHHHHHHHTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHHHHHHHH-cCchhcCHHHHHHHhCCCHHHHHHHCCCHHH
Confidence 34455666555444222 1234568999999999999999999987543
No 157
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=51.41 E-value=1.7 Score=31.91 Aligned_cols=51 Identities=12% Similarity=0.119 Sum_probs=38.5
Q ss_pred CCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCC
Q 016972 238 TKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFA 293 (379)
Q Consensus 238 TkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~ 293 (379)
-++++.|++.+.-.+.-. ..+....+++|..+||++.+++.|++.-+.+++
T Consensus 9 ~~L~~~er~il~l~~~l~-----~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 9 SKLSEREAMVLKMRKGLI-----DGREHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TTSCHHHHHHHHHHHTTT-----TSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHhcc-----cCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 357899999987765210 001235579999999999999999999888886
No 158
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=50.69 E-value=1.4 Score=36.05 Aligned_cols=47 Identities=15% Similarity=0.234 Sum_probs=37.9
Q ss_pred CCCCHHHHHHHHHH-HHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCC
Q 016972 238 TKFSQSQKEKMFEF-AERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAK 294 (379)
Q Consensus 238 TkFT~EQkekM~~f-aEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k 294 (379)
.++++.|++.+.-+ ++-. ..+++|..+||++.+++.|++.-|.++++
T Consensus 21 ~~L~~~~r~vl~l~y~~g~----------s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 21 ALLTDKQMNYIELYYADDY----------SLAEIADEFGVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp GGSCHHHHHHHHHHHHTCC----------CHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHcCC----------CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 46889999988775 3322 45799999999999999999998887754
No 159
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=50.45 E-value=24 Score=29.10 Aligned_cols=52 Identities=6% Similarity=-0.031 Sum_probs=34.1
Q ss_pred CCCCCCHHHHHHHHHHHHHh-CccCCCCCHHHHHHHHHH------hCCCCceeeeeccccccc
Q 016972 236 FRTKFSQSQKEKMFEFAERV-GWKMQKRDDDLVHEFCNE------VGVDRTVLKVWMHNNKST 291 (379)
Q Consensus 236 ~RTkFT~EQkekM~~faEk~-GWRIqk~d~~~vq~fc~e------iGv~r~V~KVWfhNnK~k 291 (379)
.+.+++.++++.+.++.++. .|.+ .++.++|..+ +.|+..+|.-|++..+..
T Consensus 80 ~~~~~~~~~~~~I~~~~~~~~~~s~----~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~~ 138 (159)
T 2k27_A 80 KPKVATPKVVEKIGDYKRQNPTMFA----WEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQ 138 (159)
T ss_dssp CCCCCCTTHHHHHHHHHHHCSSSCH----HHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSCC
T ss_pred CCCCCCHHHHHHHHHHHHHCccchH----HHHHHHHHHhcccccCCccCHHHHHHHHHHHhCC
Confidence 35678999999998887653 3321 2233334332 258889999999877653
No 160
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=50.40 E-value=5.5 Score=32.63 Aligned_cols=48 Identities=6% Similarity=0.057 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccc
Q 016972 242 QSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKS 290 (379)
Q Consensus 242 ~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~ 290 (379)
.+-++++++.|.++=|+ +.-+...++++|++.||++.+|=..|.|...
T Consensus 12 ~~~r~~Il~aa~~lf~~-~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~ 59 (195)
T 2iu5_A 12 IITQKIIAKAFKDLMQS-NAYHQISVSDIMQTAKIRRQTFYNYFQNQEE 59 (195)
T ss_dssp SHHHHHHHHHHHHHHHH-SCGGGCCHHHHHHHHTSCGGGGGGTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHh-CCCCeeCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 34455555555444222 1234568999999999999999999987543
No 161
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=50.34 E-value=2.4 Score=34.39 Aligned_cols=46 Identities=4% Similarity=0.091 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccc
Q 016972 242 QSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNN 288 (379)
Q Consensus 242 ~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNn 288 (379)
.+-++++.+.|.++=++ +.-+...++++|++.||++.+|-..|.|.
T Consensus 11 ~~~r~~Il~aa~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK 56 (202)
T 3lwj_A 11 KERRQKILTCSLDLFIE-KGYYNTSIRDIIALSEVGTGTFYNYFVDK 56 (202)
T ss_dssp HHHHHHHHHHHHHHHHH-HCTTTCCHHHHHHHHCSCHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHHH-cCcccCCHHHHHHHhCCCchhHHHHcCCH
Confidence 45555565544444111 12345688999999999999999888764
No 162
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=50.10 E-value=7.3 Score=28.19 Aligned_cols=36 Identities=6% Similarity=0.100 Sum_probs=25.9
Q ss_pred HHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 246 EKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 246 ekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
++|+.+-++.||. .++||..+||++..|.-|..+.+
T Consensus 13 ~~l~~~r~~~gls--------q~~lA~~~gis~~~i~~~e~g~~ 48 (84)
T 2ef8_A 13 QLLTKLRKEASLS--------QSELAIFLGLSQSDISKIESFER 48 (84)
T ss_dssp HHHHHHHHHTTCC--------HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHHcCCC--------HHHHHHHhCCCHHHHHHHHcCCC
Confidence 3455555555543 46899999999999999987654
No 163
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=49.95 E-value=2.4 Score=37.42 Aligned_cols=49 Identities=16% Similarity=0.168 Sum_probs=39.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCC
Q 016972 236 FRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAK 294 (379)
Q Consensus 236 ~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k 294 (379)
...+||+.|++.|.-+++ | + ..+++|+.+||+++++|+.++|-+.|++=
T Consensus 170 ~~~~Lt~~e~~vl~~~~~--g----~----s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 218 (234)
T 1l3l_A 170 DAAWLDPKEATYLRWIAV--G----K----TMEEIADVEGVKYNSVRVKLREAMKRFDV 218 (234)
T ss_dssp CCCCCCHHHHHHHHHHTT--T----C----CHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHc--C----C----CHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 456799999999877643 3 3 34699999999999999999998887753
No 164
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=49.58 E-value=3.5 Score=34.94 Aligned_cols=46 Identities=7% Similarity=0.127 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCC
Q 016972 239 KFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFA 293 (379)
Q Consensus 239 kFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~ 293 (379)
++++.|++.|.-.+ -+.-..+++|..+||++.+++.+++.-|.+++
T Consensus 198 ~L~~~~r~vl~l~~---------~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr 243 (243)
T 1l0o_C 198 ELDERERLIVYLRY---------YKDQTQSEVASRLGISQVQMSRLEKKILQHIK 243 (243)
T ss_dssp -------------------------------------------------------
T ss_pred hCCHHHHHHHHHHH---------hcCCCHHHHHHHHCcCHHHHHHHHHHHHHHcC
Confidence 46677777665522 23346789999999999999999998887663
No 165
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=49.49 E-value=3.6 Score=28.27 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=12.4
Q ss_pred HHHHHHhCCCCceeeeecccc
Q 016972 268 HEFCNEVGVDRTVLKVWMHNN 288 (379)
Q Consensus 268 q~fc~eiGv~r~V~KVWfhNn 288 (379)
++||+.+||++.+|.-|..+.
T Consensus 18 ~~lA~~~gis~~~i~~~e~g~ 38 (66)
T 2xi8_A 18 SELAALLEVSRQTINGIEKNK 38 (66)
T ss_dssp HHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHCcCHHHHHHHHcCC
Confidence 456666666666666665543
No 166
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=49.19 E-value=9 Score=33.64 Aligned_cols=53 Identities=9% Similarity=0.142 Sum_probs=32.1
Q ss_pred CCCCCCCCCCHHHH-HHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 232 GRKRFRTKFSQSQK-EKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 232 ~kKR~RTkFT~EQk-ekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
++++.|..+|.+++ +.-.+.|.+.| -+...++++|+++||++.+|-..|.|..
T Consensus 8 ~~r~~~~~~~r~~Il~aA~~l~~~~G-----~~~~s~~~IA~~aGvs~~tlY~hF~~K~ 61 (237)
T 2hxo_A 8 RPERRQEPLSRERIVGAAVELLDTVG-----ERGLTFRALAERLATGPGAIYWHITGKA 61 (237)
T ss_dssp --------CCHHHHHHHHHHHHHHTT-----TTTCCHHHHHHHHTSCGGGGGGTCCCHH
T ss_pred CCCCCCCccCHHHHHHHHHHHHHhcC-----cccCCHHHHHHHHCCChHHHHHhcCCHH
Confidence 34555666776653 33344555555 3445789999999999999999888754
No 167
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=48.83 E-value=2.7 Score=34.39 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHhCCCCceeeeecccccccC
Q 016972 262 RDDDLVHEFCNEVGVDRTVLKVWMHNNKSTF 292 (379)
Q Consensus 262 ~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~ 292 (379)
-+...++++|++.||++.+|-..|.|...-+
T Consensus 35 ~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~Ll 65 (207)
T 2rae_A 35 FDATSVDEVAEASGIARRTLFRYFPSKNAIP 65 (207)
T ss_dssp TTTSCHHHHHHHTTSCHHHHHHHCSSTTTGG
T ss_pred cccCCHHHHHHHhCCCcchHhhhCCCHHHHH
Confidence 3456889999999999999999998765433
No 168
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=48.23 E-value=3.9 Score=33.51 Aligned_cols=49 Identities=8% Similarity=0.141 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccccc
Q 016972 242 QSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKST 291 (379)
Q Consensus 242 ~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k 291 (379)
.+-++++++.|.++=|+- .-+...++++|++.||++.+|-.+|.|.-.-
T Consensus 11 ~~~r~~Il~aA~~lf~e~-G~~~~t~~~IA~~agvsk~tlY~~F~sKe~L 59 (192)
T 2fq4_A 11 IETQKAILSASYELLLES-GFKAVTVDKIAERAKVSKATIYKWWPNKAAV 59 (192)
T ss_dssp HHHHHHHHHHHHHHHHHH-CTTTCCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred hHHHHHHHHHHHHHHHHc-CcccccHHHHHHHcCCCHHHHHHHCCCHHHH
Confidence 344556665544442221 2345689999999999999999999876543
No 169
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=48.11 E-value=2.6 Score=34.28 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 263 DDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 263 d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
+...++++|++.||++.+|-..|.|..
T Consensus 35 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 61 (213)
T 2qtq_A 35 VDISLSELSLRSGLNSALVKYYFGNKA 61 (213)
T ss_dssp SCCCHHHHHHHHCCCHHHHHHHHSSHH
T ss_pred ccccHHHHHHHhCCChhhHhHhcCCHH
Confidence 345789999999999999999888754
No 170
>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, structure initiative, midwest center for structural genomic DNA-binding; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1}
Probab=47.90 E-value=3.8 Score=34.68 Aligned_cols=47 Identities=9% Similarity=0.077 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 242 QSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 242 ~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
.+-++++++.|.++=|+- .-+...++++|++.||++..|-..|.|..
T Consensus 34 ~~~r~~Il~AA~~lf~~~-G~~~~s~~~IA~~AGvs~~tlY~~F~sKe 80 (237)
T 3kkd_A 34 EQRRQAILDAAMRLIVRD-GVRAVRHRAVAAEAQVPLSATTYYFKDID 80 (237)
T ss_dssp -CHHHHHHHHHHHHHHHH-CGGGCCHHHHHHHHTSCTTTC-----CHH
T ss_pred HHHHHHHHHHHHHHHHhc-ChhhcCHHHHHHHhCCChhHHHHHcCCHH
Confidence 344555555444431111 23456889999999999999999998753
No 171
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=47.71 E-value=7.1 Score=29.07 Aligned_cols=21 Identities=14% Similarity=0.211 Sum_probs=11.7
Q ss_pred HHHHHHhCCCCceeeeecccc
Q 016972 268 HEFCNEVGVDRTVLKVWMHNN 288 (379)
Q Consensus 268 q~fc~eiGv~r~V~KVWfhNn 288 (379)
++||+.+||++.+|.-|..+.
T Consensus 35 ~elA~~~gis~~~is~~e~g~ 55 (83)
T 2a6c_A 35 FKAAELLGVTQPRVSDLMRGK 55 (83)
T ss_dssp HHHHHHHTSCHHHHHHHHTTC
T ss_pred HHHHHHHCcCHHHHHHHHcCC
Confidence 455555555555555555543
No 172
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=47.55 E-value=3.8 Score=35.34 Aligned_cols=47 Identities=15% Similarity=0.319 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 242 QSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 242 ~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
.+-++++++.|.++=++- .-+...++++|++.||++.+|-..|.|..
T Consensus 22 ~~~r~~Il~aA~~lf~~~-G~~~~s~~~IA~~agvs~~tlY~~F~sKe 68 (231)
T 2zcx_A 22 QQREEAILDAARELGTER-GIREITLTDIAATVGMHKSALLRYFETRE 68 (231)
T ss_dssp HHHHHHHHHHHHHHHHHH-CSTTCCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHHHHHHhC-CcccCCHHHHHHHhCCCHHHHHHhCCCHH
Confidence 444555555444442221 23456889999999999999999988754
No 173
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=47.47 E-value=3.4 Score=31.40 Aligned_cols=23 Identities=17% Similarity=0.426 Sum_probs=17.2
Q ss_pred HHHHHHHhCCCCceeeeeccccc
Q 016972 267 VHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 267 vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
.++||+.+||++..|.-|..+.+
T Consensus 25 q~~lA~~~gis~~~is~~e~G~~ 47 (94)
T 2kpj_A 25 QLEIAKSIGVSPQTFNTWCKGIA 47 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHhCCC
Confidence 46788888888888888876543
No 174
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=47.32 E-value=26 Score=25.67 Aligned_cols=35 Identities=14% Similarity=0.110 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccc
Q 016972 240 FSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNN 288 (379)
Q Consensus 240 FT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNn 288 (379)
.|.|||++|.+. +.+.++..+|+++..+-|.|+-.
T Consensus 12 rs~eqK~~L~~~--------------it~~l~~~lg~p~~~v~V~i~e~ 46 (72)
T 3mb2_A 12 RSTEQKAELARA--------------LSAAAAAAFDVPLAEVRLIIQEV 46 (72)
T ss_dssp CCHHHHHHHHHH--------------HHHHHHHHHTCCGGGEEEEEEEE
T ss_pred CCHHHHHHHHHH--------------HHHHHHHHhCCCcccEEEEEEEc
Confidence 489999887664 44578889999988777766554
No 175
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=47.24 E-value=4.1 Score=32.83 Aligned_cols=44 Identities=11% Similarity=0.192 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 243 SQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 243 EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
+-++++++.|.++=++ + +...++++|++.||++.+|-.+|.|..
T Consensus 14 ~~r~~Il~aA~~lf~~--~-~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 57 (190)
T 2v57_A 14 RTRRAILDAAMLVLAD--H-PTAALGDIAAAAGVGRSTVHRYYPERT 57 (190)
T ss_dssp HHHHHHHHHHHHHHTT--C-TTCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHHHHHH--c-CCCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 4566677766665322 3 778999999999999999999998754
No 176
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=47.18 E-value=1.1 Score=36.47 Aligned_cols=47 Identities=6% Similarity=0.146 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 242 QSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 242 ~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
.+-++++.+.|.++=++ ..-+...++++|++.||++.+|-.+|.|..
T Consensus 19 ~~~r~~Il~aA~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~~K~ 65 (203)
T 3mnl_A 19 RERRKRILDATMAIASK-GGYEAVQMRAVADRADVAVGTLYRYFPSKV 65 (203)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred hHHHHHHHHHHHHHHHH-cCCccCCHHHHHHHcCCChhHHHHHcCCHH
Confidence 44466666655554111 112345889999999999999999998754
No 177
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=46.22 E-value=26 Score=24.23 Aligned_cols=35 Identities=14% Similarity=0.246 Sum_probs=26.4
Q ss_pred CHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 241 SQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 241 T~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
|.|||++|-+. +.+.+++.+|+++..+-|.|+...
T Consensus 12 s~e~k~~l~~~--------------i~~~l~~~lg~p~~~v~v~i~e~~ 46 (62)
T 1otf_A 12 TDEQKETLIRQ--------------VSEAMANSLDAPLERVRVLITEMP 46 (62)
T ss_dssp CHHHHHHHHHH--------------HHHHHHHHHTCCGGGCEEEEEEEC
T ss_pred CHHHHHHHHHH--------------HHHHHHHHhCcCcccEEEEEEEeC
Confidence 79999887654 445778889999988887776543
No 178
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=46.13 E-value=2.8 Score=33.64 Aligned_cols=48 Identities=8% Similarity=0.164 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccc
Q 016972 242 QSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKS 290 (379)
Q Consensus 242 ~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~ 290 (379)
.+-++++++.|.++=++ +.-+...++++|++.||++.+|-..|.|...
T Consensus 9 ~~~r~~Il~aa~~lf~~-~G~~~~t~~~IA~~agvs~~tlY~~F~sK~~ 56 (197)
T 3rd3_A 9 DDTRQHLLDTGYRIMAV-KGFSGVGLNEILQSAGVPKGSFYHYFKSKEQ 56 (197)
T ss_dssp -CHHHHHHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHTTTCSCHHH
T ss_pred HhHHHHHHHHHHHHHHH-CCcccCCHHHHHHHhCCChhhHHHHcCCHHH
Confidence 34455555544443111 1234557899999999999999999987543
No 179
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=46.08 E-value=8.4 Score=29.00 Aligned_cols=20 Identities=10% Similarity=0.257 Sum_probs=11.6
Q ss_pred HHHHHHhCCCCceeeeeccc
Q 016972 268 HEFCNEVGVDRTVLKVWMHN 287 (379)
Q Consensus 268 q~fc~eiGv~r~V~KVWfhN 287 (379)
++||+.+||++.+|.-|..+
T Consensus 25 ~~lA~~~gis~~~is~~e~g 44 (94)
T 2ict_A 25 REFARAMEIAPSTASRLLTG 44 (94)
T ss_dssp HHHHHHHTCCHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHcC
Confidence 45566666666666555554
No 180
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=46.01 E-value=9.3 Score=30.31 Aligned_cols=47 Identities=11% Similarity=0.061 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 242 QSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 242 ~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
.+-++++.+.|.++=++- .-+...++++|++.||++.+|=..|.|..
T Consensus 11 ~~tr~~Il~aa~~l~~~~-G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~ 57 (177)
T 3kkc_A 11 QKTKVAIYNAFISLLQEN-DYSKITVQDVIGLANVGRSTFYSHYESKE 57 (177)
T ss_dssp HHHHHHHHHHHHHHTTTS-CTTTCCHHHHHHHHCCCHHHHTTTCSSTH
T ss_pred HHHHHHHHHHHHHHHHhC-ChhHhhHHHHHHHhCCcHhhHHHHcCCHH
Confidence 456677777777774332 23456899999999999999998887754
No 181
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=45.86 E-value=1.4 Score=35.88 Aligned_cols=49 Identities=12% Similarity=0.142 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCC
Q 016972 238 TKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKR 295 (379)
Q Consensus 238 TkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~ 295 (379)
.++++.|++.+.-++. ..-..+++|..+||++.++++|++.-|.++++.
T Consensus 24 ~~L~~~~r~vl~l~~~---------~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 72 (113)
T 1xsv_A 24 SLLTNKQRNYLELFYL---------EDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDY 72 (113)
T ss_dssp GGSCHHHHHHHHHHHT---------SCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHH---------cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 4577888887766421 112458999999999999999999988887653
No 182
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=45.78 E-value=4.3 Score=31.16 Aligned_cols=46 Identities=15% Similarity=0.380 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccc
Q 016972 239 KFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNN 288 (379)
Q Consensus 239 kFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNn 288 (379)
.+|.++.++++++...++ -.+...+.++|+++||++.+|+-.+..-
T Consensus 10 ~~~~~~~~~IL~~L~~~~----~~~~~t~~eLA~~Lgvs~~tV~~~L~~L 55 (77)
T 1qgp_A 10 SIYQDQEQRILKFLEELG----EGKATTAHDLSGKLGTPKKEINRVLYSL 55 (77)
T ss_dssp HHHHHHHHHHHHHHHHHC----SSSCEEHHHHHHHHCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcC----CCCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 356788788888888874 3444578899999999999887655443
No 183
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=45.59 E-value=4.6 Score=33.53 Aligned_cols=28 Identities=14% Similarity=0.222 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 262 RDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 262 ~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
-+...++++|++.||++.+|-.+|.|..
T Consensus 27 ~~~~s~~~IA~~AGvs~gtlY~~F~sKe 54 (203)
T 2np5_A 27 LEGASVREVAKRAGVSIGAVQHHFSTKD 54 (203)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred hhhccHHHHHHHhCCCHHHHHHHcCCHH
Confidence 3456899999999999999999998754
No 184
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=45.07 E-value=71 Score=24.71 Aligned_cols=53 Identities=9% Similarity=-0.009 Sum_probs=37.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC-ccCCCCCHHHHHHHHHHhCCC--Cceeeeec
Q 016972 233 RKRFRTKFSQSQKEKMFEFAERVG-WKMQKRDDDLVHEFCNEVGVD--RTVLKVWM 285 (379)
Q Consensus 233 kKR~RTkFT~EQkekM~~faEk~G-WRIqk~d~~~vq~fc~eiGv~--r~V~KVWf 285 (379)
..+....+|++|++.|++.|...- -+-.+-+..+++++.+.+|+. ...|+.+|
T Consensus 23 ~~~~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~ 78 (100)
T 2lv7_A 23 SEQRPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVII 78 (100)
T ss_dssp TTCSCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHH
T ss_pred hhcccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 345567899999999999988762 112367778999999999864 34444444
No 185
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=45.07 E-value=4.1 Score=33.17 Aligned_cols=47 Identities=6% Similarity=0.131 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 242 QSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 242 ~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
.+-++++.+.|.++=++- .-+...++++|++.||++.+|-..|.|.-
T Consensus 13 ~~~r~~Il~aa~~l~~~~-G~~~~ti~~IA~~agvs~~t~Y~~F~sK~ 59 (212)
T 3knw_A 13 EAKRQHILDSGFHLVLRK-GFVGVGLQEILKTSGVPKGSFYHYFESKE 59 (212)
T ss_dssp HHHHHHHHHHHHHHHHHH-CSTTCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred hhhHHHHHHHHHHHHHHc-CCccCCHHHHHHHhCCChHHHHHHCCCHH
Confidence 455666666555542221 23456889999999999999998888753
No 186
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=44.96 E-value=5.1 Score=32.64 Aligned_cols=28 Identities=14% Similarity=0.175 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 262 RDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 262 ~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
-+...++++|++.||++.+|-.+|.|..
T Consensus 43 ~~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 70 (212)
T 3nxc_A 43 SQRITTAKLAASVGVSEAALYRHFPSKT 70 (212)
T ss_dssp ---CCHHHHHHHTTSCHHHHHTTCSSHH
T ss_pred hhhcCHHHHHHHhCCChhHHHHHCCCHH
Confidence 3556899999999999999999998754
No 187
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=44.90 E-value=28 Score=24.03 Aligned_cols=35 Identities=14% Similarity=0.301 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 241 SQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 241 T~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
|.|||++|-+. +.+.+++.+|+++..+-|-|+...
T Consensus 12 s~eqk~~l~~~--------------i~~~l~~~lg~~~~~v~V~i~e~~ 46 (61)
T 2opa_A 12 TDEQKRNLVEK--------------VTEAVKETTGASEEKIVVFIEEMR 46 (61)
T ss_dssp CHHHHHHHHHH--------------HHHHHHHHHCCCGGGCEEEEEEEC
T ss_pred CHHHHHHHHHH--------------HHHHHHHHhCcCcCeEEEEEEEcC
Confidence 78999887654 446788889999998888877553
No 188
>3lsj_A DEST; transcriptional repressor, TETR family, DNA-binding, transcription, transcription regulation; HET: PLM COA; 2.30A {Pseudomonas aeruginosa} PDB: 3lsp_A* 3lsr_A*
Probab=44.62 E-value=5.5 Score=32.93 Aligned_cols=48 Identities=8% Similarity=0.015 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 242 QSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 242 ~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
.+-++++.+.|.++=..=+.-+...++++|++.||++.+|-..|.|..
T Consensus 10 ~~~r~~Il~aa~~l~~~~~G~~~~ti~~Ia~~Agvs~~t~Y~~F~sK~ 57 (220)
T 3lsj_A 10 QQTRHALMSAARHLMESGRGFGSLSLREVTRAAGIVPAGFYRHFSDMD 57 (220)
T ss_dssp HHHHHHHHHHHHHHTTTSCCGGGCCHHHHHHHHTSCGGGGTTTCSSHH
T ss_pred HhHHHHHHHHHHHHHHhCCCcccCCHHHHHHHhCCChhHHHHHcCCHH
Confidence 455677777777772102223567899999999999999999998754
No 189
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=44.52 E-value=3.3 Score=35.67 Aligned_cols=47 Identities=6% Similarity=0.131 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccc
Q 016972 243 SQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKS 290 (379)
Q Consensus 243 EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~ 290 (379)
+-++++++.|.++=++ +.-+...++++|++.||++.+|-.+|.|...
T Consensus 46 ~~r~~Il~aA~~lf~~-~G~~~~t~~~IA~~aGvs~~t~Y~~F~sKe~ 92 (245)
T 3aqt_A 46 QTRARLITSARTLMAE-RGVDNVGIAEITEGANIGTGTFYNYFPDREQ 92 (245)
T ss_dssp HHHHHHHHHHHHHHHH-HCGGGCCHHHHHHHTTSCGGGGGGTCSSHHH
T ss_pred HHHHHHHHHHHHHHHh-cCcccCcHHHHHHHhCCChHHHHHHcCCHHH
Confidence 3445555444443111 1134468899999999999999999988544
No 190
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=44.17 E-value=2.1 Score=35.11 Aligned_cols=28 Identities=14% Similarity=0.338 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 262 RDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 262 ~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
-+...++++|++.||++.+|-..|.|..
T Consensus 28 ~~~~ti~~Ia~~agvs~~t~Y~~F~sK~ 55 (216)
T 3s5r_A 28 IAATTMAEIAASVGVNPAMIHYYFKTRD 55 (216)
T ss_dssp TTTCCHHHHHHTTTCCHHHHHHHCSSHH
T ss_pred cccCCHHHHHHHHCCCHHHHHHHcCCHH
Confidence 3456889999999999999999998754
No 191
>4fcy_A Transposase; rnaseh, DDE transposase, DNA binding protein-DNA complex; HET: DNA; 3.71A {Enterobacteria phage MU} PDB: 2ezk_A 2ezl_A 2ezh_A 2ezi_A
Probab=44.13 E-value=11 Score=37.01 Aligned_cols=45 Identities=13% Similarity=0.064 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHH---------HHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccc
Q 016972 239 KFSQSQKEKMFEFA---------ERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHN 287 (379)
Q Consensus 239 kFT~EQkekM~~fa---------Ek~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhN 287 (379)
.+|.+|+++.++-+ ...|| .-...++++|.+.||++++|+-|+.-
T Consensus 22 ~l~~~~~~~A~~r~~~i~~v~~l~~~g~----~~~~a~~~~a~~~gvS~~Tl~rW~~~ 75 (529)
T 4fcy_A 22 NASDSQRRLAEKWLPAVQAADEMLNQGI----STKTAFATVAGHYQVSASTLRDKYYQ 75 (529)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHTTC----CHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 57888887654422 23343 23467899999999999999999753
No 192
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=44.02 E-value=8.3 Score=27.39 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=17.7
Q ss_pred HHHHHHHhCCCCceeeeeccccc
Q 016972 267 VHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 267 vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
.++||..+||++..|.-|..+.+
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 46788888888888888876643
No 193
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=43.90 E-value=8.5 Score=34.09 Aligned_cols=52 Identities=12% Similarity=0.206 Sum_probs=34.7
Q ss_pred CCCCCCCCHHHH-HHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccc
Q 016972 234 KRFRTKFSQSQK-EKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKS 290 (379)
Q Consensus 234 KR~RTkFT~EQk-ekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~ 290 (379)
++.|...|.+++ +.-.+.|.+.| -+...++++|+++||++..|-..|.|...
T Consensus 13 r~~r~~~tr~~Il~AA~~l~~e~G-----~~~~S~~~IA~~aGvs~~tlY~hF~sK~~ 65 (243)
T 2g7l_A 13 RPAKPALSRRWIVDTAVALMRAEG-----LEKVTMRRLAQELDTGPASLYVYVANTAE 65 (243)
T ss_dssp ---CCCCCHHHHHHHHHHHHHHHC-----SSSCCHHHHHHHTTSCHHHHTTTCCSHHH
T ss_pred CCCCcccCHHHHHHHHHHHHHhcC-----chhcCHHHHHHHHCCChhHHHHHcCCHHH
Confidence 444566776653 33344555555 34557899999999999999988887543
No 194
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=43.86 E-value=19 Score=29.20 Aligned_cols=52 Identities=8% Similarity=0.001 Sum_probs=31.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHh-CccCCCCCHHHHHHHHHHh----C--CCCceeeeecccccc
Q 016972 235 RFRTKFSQSQKEKMFEFAERV-GWKMQKRDDDLVHEFCNEV----G--VDRTVLKVWMHNNKS 290 (379)
Q Consensus 235 R~RTkFT~EQkekM~~faEk~-GWRIqk~d~~~vq~fc~ei----G--v~r~V~KVWfhNnK~ 290 (379)
|.+.+++.|+++.+.++.++. .|.+ .++.++|..+- | |+..+|.-|++....
T Consensus 86 r~~~~~~~~~~~~I~~~~~~~~~~s~----~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~~~ 144 (149)
T 1k78_A 86 SKPKVATPKVVEKIAEYKRQNPTMFA----WEIRDRLLAERVCDNDTVPSVSSINRIIRTKVQ 144 (149)
T ss_dssp CCCSSSCHHHHHHHHHHHHHCTTCCH----HHHHHHHHHTTSSCTTTSCCHHHHHHHHHCC--
T ss_pred CCCCCCCHHHHHHHHHHHHhCcchhH----HHHHHHHHHhcccccCCCcCHHHHHHHHHHHhc
Confidence 335688999999999987654 3321 22233332221 5 788899999876543
No 195
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=43.63 E-value=4 Score=33.70 Aligned_cols=48 Identities=4% Similarity=0.137 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccc
Q 016972 240 FSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNN 288 (379)
Q Consensus 240 FT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNn 288 (379)
.+.+-++++++.|.++=++- .-+...++++|++.||++.+|-..|.|.
T Consensus 9 ~~~~tr~~Il~aa~~l~~~~-G~~~~ti~~Ia~~agvs~~t~Y~~F~~K 56 (189)
T 3vp5_A 9 LSDEKRNRVYDACLNEFQTH-SFHEAKIMHIVKALDIPRGSFYQYFEDL 56 (189)
T ss_dssp SCHHHHHHHHHHHHHHHHHS-CTTTCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred CCHHHHHHHHHHHHHHHHHC-CcccccHHHHHHHhCCChHHHHHHCCCH
Confidence 45666777776665552222 2344589999999999999998888764
No 196
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=43.32 E-value=31 Score=24.61 Aligned_cols=35 Identities=14% Similarity=0.127 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccc
Q 016972 240 FSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNN 288 (379)
Q Consensus 240 FT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNn 288 (379)
.|.|||++|-+. +.+.+++.+|+++..+-|-|+-.
T Consensus 11 rs~eqk~~L~~~--------------it~~~~~~lg~p~~~v~V~i~e~ 45 (65)
T 3ry0_A 11 RSPQEVAALGEA--------------LTAAAHETLGTPVEAVRVIVEET 45 (65)
T ss_dssp CCHHHHHHHHHH--------------HHHHHHHHHCCCGGGCEEEEEEE
T ss_pred CCHHHHHHHHHH--------------HHHHHHHHhCcCcccEEEEEEEc
Confidence 479999987664 44578888999988777766543
No 197
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=43.29 E-value=2.9 Score=34.61 Aligned_cols=47 Identities=9% Similarity=0.169 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccc
Q 016972 243 SQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKS 290 (379)
Q Consensus 243 EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~ 290 (379)
+-++++++.|.++=++ +.-+...++++|++.||++.+|-..|.|...
T Consensus 15 ~~r~~Il~aA~~lf~~-~G~~~~s~~~IA~~agvs~~t~Y~~F~sKe~ 61 (221)
T 3c2b_A 15 PRQNAVLDQALRLLVE-GGEKALTTSGLARAANCSKESLYKWFGDRDG 61 (221)
T ss_dssp HHHHHHHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHHHHSSHHH
T ss_pred HHHHHHHHHHHHHHHh-CCcccCCHHHHHHHhCCCHHHHHHhCCCHHH
Confidence 3355555544443111 1234568999999999999999999988544
No 198
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=43.27 E-value=3 Score=34.07 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=23.5
Q ss_pred CCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 261 KRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 261 k~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
+ + ..++++|++.||++.+|-.+|.|..
T Consensus 33 ~-~-~s~~~IA~~agvs~~tlY~~F~sK~ 59 (194)
T 2q24_A 33 L-D-AHLERIAREAGVGSGTLYRNFPTRE 59 (194)
T ss_dssp T-T-CCHHHHHHHTTCCHHHHHHHCCSHH
T ss_pred c-C-CCHHHHHHHhCCChHHHHHHcCCHH
Confidence 6 5 6899999999999999999987753
No 199
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=43.20 E-value=2 Score=30.05 Aligned_cols=43 Identities=9% Similarity=0.128 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCC
Q 016972 243 SQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKR 295 (379)
Q Consensus 243 EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~ 295 (379)
.|++.|.-+++ | + ..+++|.++||++.+++.++++-+.+++..
T Consensus 2 re~~vl~l~~~--g----~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~~ 44 (61)
T 2jpc_A 2 RERQVLKLIDE--G----Y----TNHGISEKLHISIKTVETHRMNMMRKLQVH 44 (61)
T ss_dssp HHHHHHHHHHT--S----C----CSHHHHHHTCSCHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHc--C----C----CHHHHHHHhCCCHHHHHHHHHHHHHHHCCC
Confidence 35666655543 3 2 236999999999999999999988877654
No 200
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=42.93 E-value=30 Score=25.97 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccc
Q 016972 240 FSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNN 288 (379)
Q Consensus 240 FT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNn 288 (379)
.|.|||++|-+- +.+.+++.+|+++..+-|.|+-.
T Consensus 12 rs~eqK~~L~~~--------------it~~l~~~lg~p~~~v~V~i~E~ 46 (76)
T 3ej9_A 12 RTDEQKRALSAG--------------LLRVISEATGEPRENIFFVIREG 46 (76)
T ss_dssp CCHHHHHHHHHH--------------HHHHHHHHHCCCGGGCEEEEEEE
T ss_pred CCHHHHHHHHHH--------------HHHHHHHHHCcCcccEEEEEEEe
Confidence 479999887654 45678888999988777655443
No 201
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=42.87 E-value=7 Score=31.38 Aligned_cols=40 Identities=13% Similarity=0.217 Sum_probs=28.8
Q ss_pred HHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccc
Q 016972 246 EKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKS 290 (379)
Q Consensus 246 ekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~ 290 (379)
+...+.|.+.| -+...++++|++.||++.+|-..|.|...
T Consensus 18 ~aa~~lf~~~G-----~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~ 57 (196)
T 3he0_A 18 AAAEQLIAESG-----FQGLSMQKLANEAGVAAGTIYRYFSDKEH 57 (196)
T ss_dssp HHHHHHHHHHC-----TTTCCHHHHHHHHTSCHHHHHTTCSSHHH
T ss_pred HHHHHHHHHhC-----cccCCHHHHHHHhCCCcchHHHhcCCHHH
Confidence 33344444445 34568899999999999999988887543
No 202
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=42.23 E-value=12 Score=26.22 Aligned_cols=25 Identities=24% Similarity=0.207 Sum_probs=21.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC
Q 016972 232 GRKRFRTKFSQSQKEKMFEFAERVG 256 (379)
Q Consensus 232 ~kKR~RTkFT~EQkekM~~faEk~G 256 (379)
+.+++..+||+|+++.|++.|+..|
T Consensus 14 r~~~i~vRlt~eE~~~l~~~A~~~g 38 (51)
T 2ba3_A 14 KTVVRTLRFSPVEDETIRKKAEDSG 38 (51)
T ss_dssp CSEEEEEEECHHHHHHHHHHHHHHT
T ss_pred CceeEEEEECHHHHHHHHHHHHHhC
Confidence 3455667899999999999999998
No 203
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=41.79 E-value=5.9 Score=28.37 Aligned_cols=17 Identities=12% Similarity=0.239 Sum_probs=8.6
Q ss_pred CCHHHHHHHHHHhCCCC
Q 016972 262 RDDDLVHEFCNEVGVDR 278 (379)
Q Consensus 262 ~d~~~vq~fc~eiGv~r 278 (379)
++...+.++|..+||+.
T Consensus 48 ~~~~~l~~ia~~l~v~~ 64 (73)
T 3omt_A 48 PSLETLFDIAEALNVDV 64 (73)
T ss_dssp CCHHHHHHHHHHHTSCG
T ss_pred CCHHHHHHHHHHHCcCH
Confidence 44455555555555543
No 204
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=41.76 E-value=2.6 Score=33.92 Aligned_cols=28 Identities=7% Similarity=0.135 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 262 RDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 262 ~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
-+...++++|++.||++.+|-.+|.|..
T Consensus 26 ~~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 53 (206)
T 3dew_A 26 FYGVSIRELAQAAGASISMISYHFGGKE 53 (206)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHSCHHH
T ss_pred cccCcHHHHHHHhCCCHHHHHHHcCCHH
Confidence 3456889999999999999999997754
No 205
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=41.68 E-value=30 Score=25.63 Aligned_cols=47 Identities=6% Similarity=0.142 Sum_probs=33.1
Q ss_pred CCCCCHHHHHHHHHHHHHhC-ccCCCCCHHHHHHHHHHhCCCCceeeee
Q 016972 237 RTKFSQSQKEKMFEFAERVG-WKMQKRDDDLVHEFCNEVGVDRTVLKVW 284 (379)
Q Consensus 237 RTkFT~EQkekM~~faEk~G-WRIqk~d~~~vq~fc~eiGv~r~V~KVW 284 (379)
|+.||+|.=+.|.+|..+.. .-.......+-++|++ .-+++++.|-|
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~-~~~~~HtwqSw 49 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEK-SSLTQHSWQSL 49 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHH-SCSSSCCSHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHH-hHCCCCCHHHH
Confidence 89999999999999988762 0011224467778876 23678887766
No 206
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=41.61 E-value=1.4 Score=35.94 Aligned_cols=46 Identities=13% Similarity=0.126 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccc
Q 016972 242 QSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNN 288 (379)
Q Consensus 242 ~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNn 288 (379)
++-++++++.|.++=++ +.-+...++++|++.||++..|-.+|.|.
T Consensus 17 ~~~R~~Il~aA~~lf~~-~G~~~~s~~~IA~~aGvs~~tlY~~F~sK 62 (212)
T 3loc_A 17 SAKKKAILSAALDTFSQ-FGFHGTRLEQIAELAGVSKTNLLYYFPSK 62 (212)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHCCHHHHHHHHTSCHHHHHHHSSSH
T ss_pred HHHHHHHHHHHHHHHHH-hCcccCCHHHHHHHHCcCHHHHhhhCCCH
Confidence 45567777655554111 11334578999999999999999999874
No 207
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=41.16 E-value=11 Score=29.58 Aligned_cols=36 Identities=17% Similarity=0.184 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecc
Q 016972 243 SQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMH 286 (379)
Q Consensus 243 EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfh 286 (379)
-+++.+++..++.+|. +.+-|+.+||+|.+|..||.
T Consensus 41 ~Er~~I~~aL~~~~GN--------~s~AA~~LGISR~TLyrKLk 76 (81)
T 1umq_A 41 VRWEHIQRIYEMCDRN--------VSETARRLNMHRRTLQRILA 76 (81)
T ss_dssp HHHHHHHHHHHHTTSC--------HHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC--------HHHHHHHhCCCHHHHHHHHH
Confidence 3566667777777764 45889999999999988775
No 208
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=41.15 E-value=13 Score=27.99 Aligned_cols=36 Identities=14% Similarity=0.159 Sum_probs=25.2
Q ss_pred HHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 246 EKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 246 ekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
++|+.+-++.||. .++||..+||++.+|.-|..+.+
T Consensus 7 ~~l~~~r~~~glt--------q~~lA~~~gis~~~is~~e~g~~ 42 (99)
T 2l49_A 7 EKIVLMRKSEYLS--------RQQLADLTGVPYGTLSYYESGRS 42 (99)
T ss_dssp HHHHHHHHHTTCC--------HHHHHHHHCCCHHHHHHHTTTSS
T ss_pred HHHHHHHHHcCCC--------HHHHHHHHCcCHHHHHHHHcCCC
Confidence 3455555555543 36888899999998888887754
No 209
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=40.82 E-value=7.4 Score=28.49 Aligned_cols=22 Identities=9% Similarity=0.366 Sum_probs=19.8
Q ss_pred HHHHHHHhCCCCceeeeecccc
Q 016972 267 VHEFCNEVGVDRTVLKVWMHNN 288 (379)
Q Consensus 267 vq~fc~eiGv~r~V~KVWfhNn 288 (379)
++++|..+||++.+|.-|..+.
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~~G 26 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQEQG 26 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTTTT
T ss_pred HHHHHHHHCcCHHHHHHHHHCC
Confidence 5789999999999999999764
No 210
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=40.62 E-value=8.7 Score=35.13 Aligned_cols=50 Identities=14% Similarity=0.169 Sum_probs=41.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCC
Q 016972 236 FRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKR 295 (379)
Q Consensus 236 ~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~ 295 (379)
....||+.|+|.|.-+++ | +. .+++|+++||+++++|..+.|-+.|++-+
T Consensus 194 ~~~~Lt~re~~vl~~~~~--G----~s----~~eIA~~l~is~~TV~~~~~~~~~kl~~~ 243 (265)
T 3qp6_A 194 SNMPLSQREYDIFHWMSR--G----KT----NWEIATILNISERTVKFHVANVIRKLNAN 243 (265)
T ss_dssp CCCCCCHHHHHHHHHHHT--T----CC----HHHHHHHHTSCHHHHHHHHHHHHHHTTCS
T ss_pred CcCCCCHHHHHHHHHHHc--C----CC----HHHHHHHHCcCHHHHHHHHHHHHHHhCCC
Confidence 346899999999988863 4 33 46999999999999999999998888643
No 211
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=40.57 E-value=4.2 Score=33.24 Aligned_cols=27 Identities=7% Similarity=0.030 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 263 DDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 263 d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
+...++++|++.||++.+|-.+|.|..
T Consensus 28 ~~~ti~~IA~~agvs~~t~Y~~F~sK~ 54 (193)
T 2dg8_A 28 ARVSHRRIAQRAGVPLGSMTYHFTGIE 54 (193)
T ss_dssp GGCCHHHHHHHHTSCTHHHHHHCSSHH
T ss_pred hhccHHHHHHHhCCCchhhheeCCCHH
Confidence 456889999999999999999988754
No 212
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=40.32 E-value=13 Score=27.03 Aligned_cols=35 Identities=17% Similarity=0.199 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecc
Q 016972 244 QKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMH 286 (379)
Q Consensus 244 QkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfh 286 (379)
+++.+....++.+|. +.+.|+.+||++.+|.-||.
T Consensus 20 E~~~i~~aL~~~~gn--------~~~aA~~LGisr~tL~rklk 54 (63)
T 3e7l_A 20 EKIFIEEKLREYDYD--------LKRTAEEIGIDLSNLYRKIK 54 (63)
T ss_dssp HHHHHHHHHHHTTTC--------HHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC--------HHHHHHHHCcCHHHHHHHHH
Confidence 455556666666654 46889999999999998885
No 213
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=40.20 E-value=3.4 Score=35.08 Aligned_cols=43 Identities=16% Similarity=0.097 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccc
Q 016972 245 KEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNN 288 (379)
Q Consensus 245 kekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNn 288 (379)
++++++.|.++=++- ..+...++++|++.||++..|-.+|-|.
T Consensus 16 R~~Il~AA~~lf~~~-G~~~~s~~~IA~~AGvs~~tlY~~F~sK 58 (208)
T 3v6g_A 16 RQAIVEAAERVIARQ-GLGGLSHRRVAAEANVPVGSTTYYFNDL 58 (208)
T ss_dssp HHHHHHHHHHHHHHH-CTTCCCHHHHHHHHTSCHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHh-CcccCCHHHHHHHhCCCchhHHHHcCCH
Confidence 455555444331111 2344578999999999999999999764
No 214
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=39.76 E-value=11 Score=32.48 Aligned_cols=54 Identities=15% Similarity=0.247 Sum_probs=33.5
Q ss_pred CCCCCCCCCCHHHH-HHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccc
Q 016972 232 GRKRFRTKFSQSQK-EKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKS 290 (379)
Q Consensus 232 ~kKR~RTkFT~EQk-ekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~ 290 (379)
.+++.|.+.|.+++ +...+.|.+.| .+...++++|++.||++.+|-.+|.|...
T Consensus 17 ~~~~~r~~~tr~~Il~aA~~l~~~~G-----~~~~s~~~IA~~aGvs~~tlY~~F~~K~~ 71 (211)
T 3fiw_A 17 LYFQGMTKMNRETVITEALDLLDEVG-----LDGVSTRRLAKRLGVEQPSLYWYFRTKRD 71 (211)
T ss_dssp -------CCCHHHHHHHHHHHHHHHC-----GGGCCHHHHHHHHTSCTHHHHTTCSSHHH
T ss_pred CCcccccccCHHHHHHHHHHHHHhcC-----cccCCHHHHHHHhCCChhHHHHHcCCHHH
Confidence 34556666776654 33444555555 34457899999999999999999976543
No 215
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.56 E-value=27 Score=25.90 Aligned_cols=23 Identities=9% Similarity=0.072 Sum_probs=20.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC
Q 016972 234 KRFRTKFSQSQKEKMFEFAERVG 256 (379)
Q Consensus 234 KR~RTkFT~EQkekM~~faEk~G 256 (379)
...|-+||+|+-++|+++.++.|
T Consensus 6 ~~k~~~Wt~eED~~L~~~v~~~G 28 (70)
T 2dim_A 6 SGKGGVWRNTEDEILKAAVMKYG 28 (70)
T ss_dssp CSTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHC
Confidence 44567999999999999999987
No 216
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=39.52 E-value=7.3 Score=30.92 Aligned_cols=46 Identities=17% Similarity=0.238 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 243 SQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 243 EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
+-++++++.|.++=++- .-+...++++|++.||++.+|-..|.|..
T Consensus 4 ~~r~~Il~aa~~l~~~~-G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 49 (170)
T 3egq_A 4 DQSVRIIEAALRLYMKK-PPHEVSIEEIAREAKVSKSLIFYHFESKQ 49 (170)
T ss_dssp HHHHHHHHHHHHHHTTS-CGGGCCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHHHHHhc-CCccCcHHHHHHHhCCCchhHHHHcCCHH
Confidence 44666666666652221 23456899999999999999998887743
No 217
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=39.32 E-value=12 Score=31.46 Aligned_cols=46 Identities=15% Similarity=0.200 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceee-ee
Q 016972 239 KFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLK-VW 284 (379)
Q Consensus 239 kFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~K-VW 284 (379)
.+|+||++++++.|.++.=+-.+-+.+++.+|-.+.||+..+|+ +|
T Consensus 26 ~it~ee~~~y~~iF~~lD~~dG~Isg~elr~~~~~sgLp~~~L~~Iw 72 (121)
T 3fia_A 26 AITVEERAKHDQQFHSLKPISGFITGDQARNFFFQSGLPQPVLAQIW 72 (121)
T ss_dssp CCCHHHHHHHHHHHHHTCCBTTBEEHHHHHHHHGGGCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCCeECHHHHHHHHHHcCCCHHHHHHHH
Confidence 37999999999999997522233445777777778899888775 44
No 218
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=39.16 E-value=20 Score=29.98 Aligned_cols=42 Identities=7% Similarity=0.046 Sum_probs=30.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCc-cCCCCCHHHHHHHHHHhCCCC
Q 016972 237 RTKFSQSQKEKMFEFAERVGW-KMQKRDDDLVHEFCNEVGVDR 278 (379)
Q Consensus 237 RTkFT~EQkekM~~faEk~GW-RIqk~d~~~vq~fc~eiGv~r 278 (379)
++.||+||++.|++.|...-. +-.+-+..++..+.+.+|+..
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~ 44 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSP 44 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCC
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCCh
Confidence 578999999999998876521 112556678888888888764
No 219
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=39.03 E-value=5.7 Score=32.19 Aligned_cols=47 Identities=19% Similarity=0.254 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 242 QSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 242 ~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
++-++++++.|.++=++ +.-+...++++|++.||++.+|-..|.|..
T Consensus 13 ~~~r~~Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~ 59 (220)
T 3lhq_A 13 LETRQHILDVALRLFSQ-QGVSATSLAEIANAAGVTRGAIYWHFKNKS 59 (220)
T ss_dssp HHHHHHHHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHHHHHHH-cCcccCCHHHHHHHhCCCceeehhhcCCHH
Confidence 44555555544443111 123456889999999999999999998743
No 220
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=39.02 E-value=4.3 Score=32.38 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHhCCCCceeeeecccccc
Q 016972 263 DDDLVHEFCNEVGVDRTVLKVWMHNNKS 290 (379)
Q Consensus 263 d~~~vq~fc~eiGv~r~V~KVWfhNnK~ 290 (379)
+...++++|++.||++.+|-..|.|...
T Consensus 28 ~~~tv~~Ia~~agvs~~t~Y~~F~sK~~ 55 (195)
T 3ppb_A 28 HGTSTATIAREAGVATGTLFHHFPSKEQ 55 (195)
T ss_dssp TTSCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred ccCCHHHHHHHhCCChhHHHHHcCCHHH
Confidence 4567999999999999999999987543
No 221
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=38.81 E-value=13 Score=27.13 Aligned_cols=36 Identities=17% Similarity=0.453 Sum_probs=24.0
Q ss_pred HHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 246 EKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 246 ekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
++|+.+-++.||. .++||..+||++..|.-|..+.+
T Consensus 15 ~~l~~~r~~~gls--------q~~lA~~~gis~~~i~~~e~g~~ 50 (88)
T 2wiu_B 15 NAMKLVRQQNGWT--------QSELAKKIGIKQATISNFENNPD 50 (88)
T ss_dssp HHHHHHHHHTTCC--------HHHHHHHHTCCHHHHHHHHHCGG
T ss_pred HHHHHHHHHcCCC--------HHHHHHHhCCCHHHHHHHHcCCC
Confidence 4455555555533 36788888888888888887643
No 222
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=38.73 E-value=6 Score=31.74 Aligned_cols=47 Identities=9% Similarity=0.127 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 242 QSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 242 ~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
.+-++++.+.|.++=++ +.-+...++++|++.||++.+|-..|.|..
T Consensus 6 ~~~r~~Il~aa~~l~~~-~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~ 52 (199)
T 3qbm_A 6 QETRERVVAQAAALFNV-SGYAGTAISDIMAATGLEKGGIYRHFESKE 52 (199)
T ss_dssp HHHHHHHHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHHTTCSSHH
T ss_pred hhHHHHHHHHHHHHHHH-hCcCcCCHHHHHHHhCCCccHHHHhCCCHH
Confidence 34455555544444222 123455889999999999999999998754
No 223
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=37.86 E-value=7.4 Score=33.28 Aligned_cols=48 Identities=4% Similarity=0.120 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCC
Q 016972 238 TKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKR 295 (379)
Q Consensus 238 TkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~ 295 (379)
..+|+.|++.|.-+++-+ ..++++++++++.+++++.+.|=+.|+.-+
T Consensus 148 ~~LT~rE~~vL~~l~~g~----------s~~eIa~~l~is~~TV~~hi~~l~~KL~~~ 195 (225)
T 3c3w_A 148 SGLTDQERTLLGLLSEGL----------TNKQIADRMFLAEKTVKNYVSRLLAKLGME 195 (225)
T ss_dssp TTSCHHHHHHHHHHHTTC----------CHHHHHHHHTCCHHHHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHCCC----------CHHHHHHHhCCCHHHHHHHHHHHHHHhCCC
Confidence 469999999988887642 357899999999999999999988887543
No 224
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=37.82 E-value=41 Score=26.45 Aligned_cols=45 Identities=16% Similarity=0.155 Sum_probs=29.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCc-cCCCCCHHHHHHHHHHhCCC
Q 016972 233 RKRFRTKFSQSQKEKMFEFAERVGW-KMQKRDDDLVHEFCNEVGVD 277 (379)
Q Consensus 233 kKR~RTkFT~EQkekM~~faEk~GW-RIqk~d~~~vq~fc~eiGv~ 277 (379)
.++.|..|+++|+++|++.|...-- +-.+-+..++..+...+|+.
T Consensus 15 ~~~~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~ 60 (169)
T 3qrx_A 15 QKKGRVGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFE 60 (169)
T ss_dssp -----CCCCHHHHHHHHHHHHHHCTTCCSEECHHHHHHHHHHTSCC
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCC
Confidence 4677899999999999999988620 01245567777777777764
No 225
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=37.54 E-value=3.4 Score=33.76 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 245 KEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 245 kekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
++++++.|.++=|+-.+ . ..++++|++.||++.+|-..|.|..
T Consensus 18 r~~Il~aA~~lf~~~G~-~-~s~~~Ia~~agvs~~t~Y~~F~sK~ 60 (199)
T 2rek_A 18 YDRIIEAAAAEVARHGA-D-ASLEEIARRAGVGSATLHRHFPSRW 60 (199)
T ss_dssp HHHHHHHHHHHHHHHGG-G-CCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHHHhcCC-C-CCHHHHHHHhCCchHHHHHHCCCHH
Confidence 45555544443233336 3 6899999999999999998887753
No 226
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=37.40 E-value=6.6 Score=33.46 Aligned_cols=48 Identities=6% Similarity=0.056 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccc
Q 016972 242 QSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKS 290 (379)
Q Consensus 242 ~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~ 290 (379)
.+-++++.+.|.++=++- ..+...++++|++.||++..|-..|.|...
T Consensus 15 ~~~r~~il~aA~~l~~~~-G~~~~s~~~IA~~agvs~~t~Y~~F~~K~~ 62 (216)
T 2oi8_A 15 TQVRAEIKDHAWEQIATA-GASALSLNAIAKRMGMSGPALYRYFDGRDE 62 (216)
T ss_dssp HHHHHHHHHHHHHHHHHH-CTTSCCHHHHHHHTTCCHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHhc-CcccCCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 455666666555542211 234468899999999999999999987543
No 227
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=36.83 E-value=15 Score=28.64 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=9.0
Q ss_pred HHHHHhCCCCceeeeeccc
Q 016972 269 EFCNEVGVDRTVLKVWMHN 287 (379)
Q Consensus 269 ~fc~eiGv~r~V~KVWfhN 287 (379)
+||+.+||++.+|.-|..+
T Consensus 42 eLA~~~GiS~~tis~iE~G 60 (88)
T 3t76_A 42 ELREAVGVSKSTFAKLGKN 60 (88)
T ss_dssp HHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHCcCHHHHHHHHcC
Confidence 4444444444444444443
No 228
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=36.75 E-value=15 Score=28.11 Aligned_cols=28 Identities=32% Similarity=0.681 Sum_probs=19.8
Q ss_pred ccCccccccCCCCCCCCCCccccccc--cccccccccC
Q 016972 90 LDGCGEFMPSPTATPSDPTSLKCAAC--GCHRNFHRRE 125 (379)
Q Consensus 90 vDGCGEFMPSGeegt~dp~ALKCAAC--GCHRNFHRKE 125 (379)
=|=||+|| .. ..|+|..| .||+-=+.+.
T Consensus 38 C~~C~~~l--~~------qG~kC~~C~~~cHkkC~~~V 67 (72)
T 2fnf_X 38 CDLCGREV--LR------QALRCANCKFTCHSECRSLI 67 (72)
T ss_dssp CTTTSSBC--SS------CCEECTTSSCEECTGGGGGC
T ss_pred hhhhhHHH--Hh------CcCccCCCCCeechhhhccC
Confidence 57799999 32 36999999 5776555443
No 229
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=36.68 E-value=59 Score=25.11 Aligned_cols=45 Identities=11% Similarity=0.130 Sum_probs=32.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCc-cCCCCCHHHHHHHHHHhCCC
Q 016972 233 RKRFRTKFSQSQKEKMFEFAERVGW-KMQKRDDDLVHEFCNEVGVD 277 (379)
Q Consensus 233 kKR~RTkFT~EQkekM~~faEk~GW-RIqk~d~~~vq~fc~eiGv~ 277 (379)
+...++.||++|+++++..|...-- +-.+-+..++..+.+.+|+.
T Consensus 10 ~~~~~~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~ 55 (161)
T 3fwb_A 10 SGPLNSELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFE 55 (161)
T ss_dssp TTTTTTTSCHHHHHHHHHHHHHHCTTSSSEECHHHHHHHHHHTTCC
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCC
Confidence 4556788999999999999987621 12245667778888887754
No 230
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=36.64 E-value=2.1 Score=35.56 Aligned_cols=47 Identities=2% Similarity=0.022 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHH-HHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCC
Q 016972 239 KFSQSQKEKMFE-FAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKR 295 (379)
Q Consensus 239 kFT~EQkekM~~-faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~ 295 (379)
++++.|++.+.- |++. -..+++|..+||++.+++.+++.-|.++++.
T Consensus 140 ~L~~~~r~vl~l~~~~g----------~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~ 187 (194)
T 1or7_A 140 SLPEDLRMAITLRELDG----------LSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 187 (194)
T ss_dssp HSCHHHHHHHHHHHTTC----------CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHhHHHHHcC----------CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 355666666644 3222 2457999999999999999999988887653
No 231
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=36.46 E-value=45 Score=26.23 Aligned_cols=36 Identities=6% Similarity=0.108 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 240 FSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 240 FT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
.|.|||++|-+. +-+.|++.+||+...+-|.|+...
T Consensus 68 ~~~eqk~~l~~~--------------i~~~l~~~lgi~~~~v~I~~~e~~ 103 (115)
T 1uiz_A 68 IGGPQNKSYTKL--------------LCDILTKQLNIPANRVYINYYDLN 103 (115)
T ss_dssp CSHHHHHHHHHH--------------HHHHHHHHHCCCGGGEEEEEEECC
T ss_pred CCHHHHHHHHHH--------------HHHHHHHHhCcCcceEEEEEEECC
Confidence 469999876553 335688899999999999988664
No 232
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=36.32 E-value=3.7 Score=33.67 Aligned_cols=44 Identities=14% Similarity=0.197 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 245 KEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 245 kekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
++++.+.|.++=++- .-+...++++|++.||++.+|-..|.|..
T Consensus 13 r~~Il~aA~~lf~~~-G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~ 56 (216)
T 3f0c_A 13 LELIINAAQKRFAHY-GLCKTTMNEIASDVGMGKASLYYYFPDKE 56 (216)
T ss_dssp HHHHHHHHHHHHHHH-CSSSCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHHHHc-CCCcCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 444554433331111 23445789999999999999999988754
No 233
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=36.32 E-value=10 Score=29.79 Aligned_cols=56 Identities=14% Similarity=0.095 Sum_probs=35.2
Q ss_pred CCCCCC-CCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCC
Q 016972 233 RKRFRT-KFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRD 296 (379)
Q Consensus 233 kKR~RT-kFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~ 296 (379)
.||.|. +.|.++++. ..|.+ +.+...+.+.|.+.||+..+|.-=++.+-.+++..+
T Consensus 6 pk~~ryr~Yte~~L~~---Ai~aV-----r~g~mS~~~Aak~yGVP~sTL~~RVk~~~~~~~~~~ 62 (70)
T 2cob_A 6 SGRGRYRQYNSEILEE---AISVV-----MSGKMSVSKAQSIYGIPHSTLEYKVKERLGTLKNPP 62 (70)
T ss_dssp CCSSCSCCCCHHHHHH---HHHHH-----HTTSSCHHHHHHHHTCCHHHHHHHHHHHTTTTSSCC
T ss_pred cccccccccCHHHHHH---HHHHH-----HcCCccHHHHHHHhCCChHHHHHHHHhhcccccCCc
Confidence 344443 366666554 33333 122256789999999999999977777666654443
No 234
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=36.26 E-value=6.4 Score=32.36 Aligned_cols=47 Identities=9% Similarity=0.220 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccc
Q 016972 243 SQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKS 290 (379)
Q Consensus 243 EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~ 290 (379)
+-++++++.|.++=|+- .-+...++++|++.||++.+|-.+|.|...
T Consensus 11 ~~r~~Il~aA~~lf~~~-G~~~~s~~~IA~~agvs~~t~Y~~F~sK~~ 57 (212)
T 2ras_A 11 AMRARLVDVAQAIVEER-GGAGLTLSELAARAGISQANLSRYFETRED 57 (212)
T ss_dssp HHHHHHHHHHHHHHHHH-TSSCCCHHHHHHHHTSCHHHHTTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHh-CcccCcHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 44566666554442221 234458899999999999999999988543
No 235
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=36.06 E-value=4.1 Score=32.54 Aligned_cols=47 Identities=9% Similarity=0.191 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccc
Q 016972 243 SQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKS 290 (379)
Q Consensus 243 EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~ 290 (379)
+.++++.+.|.++= .-+.-+...++++|++.||++.+|-..|.|...
T Consensus 10 ~~r~~Il~aa~~l~-~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~ 56 (196)
T 3col_A 10 NKQVKIQDAVAAII-LAEGPAGVSTTKVAKRVGIAQSNVYLYFKNKQA 56 (196)
T ss_dssp CHHHHHHHHHHHHH-HHHCGGGCCHHHHHHHHTSCHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHH-HhcCcccCCHHHHHHHhCCcHHHHHHHhCCHHH
Confidence 34555555444431 111244568899999999999999999887543
No 236
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=35.91 E-value=3.6 Score=35.83 Aligned_cols=51 Identities=8% Similarity=0.087 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCC
Q 016972 242 QSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFA 293 (379)
Q Consensus 242 ~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~ 293 (379)
.+-++++++.|.++=++ +--+...++++|++.||++.+|-..|.|...-+.
T Consensus 47 ~~tr~~Il~AA~~lf~e-~G~~~~Ti~~IA~~AGvs~~t~Y~yF~sKe~Ll~ 97 (260)
T 2of7_A 47 TRTREAIRAATYGLIRQ-QGYEATTVEQIAERAEVSPSTVLRYFPTREDIVL 97 (260)
T ss_dssp HHHHHHHHHHHHHHHHH-HCSTTCCHHHHHHHHTSCHHHHHHHCSSHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH-hCcccccHHHHHHHhCCChHHHHHHcCCHHHHHH
Confidence 44556666655444222 1244468899999999999999999988666554
No 237
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=35.88 E-value=47 Score=25.97 Aligned_cols=36 Identities=11% Similarity=0.206 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 240 FSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 240 FT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
.|.|||++|-+. +-+.|.+.+||+...+-|.|+...
T Consensus 67 ~~~eqk~~l~~~--------------i~~~l~~~lgi~~~~v~I~~~e~~ 102 (113)
T 1hfo_A 67 IEPSRNRDHSAK--------------LFDHLNTKLGIPKNRMYIHFVNLN 102 (113)
T ss_dssp CSHHHHHHHHHH--------------HHHHHHHHHCCCGGGEEEEEEECC
T ss_pred CCHHHHHHHHHH--------------HHHHHHHHhCcCcCeEEEEEEECC
Confidence 469999876553 335688999999999999988664
No 238
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=35.74 E-value=6.4 Score=31.81 Aligned_cols=48 Identities=6% Similarity=0.127 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccc
Q 016972 242 QSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKS 290 (379)
Q Consensus 242 ~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~ 290 (379)
.+-++++.+.|.++=++- .-+...++++|++.||++.+|-..|.|...
T Consensus 10 ~~~r~~Il~aA~~lf~~~-G~~~~s~~~Ia~~agvs~~t~Y~~F~sK~~ 57 (203)
T 3b81_A 10 NNKRTELANKIWDIFIAN-GYENTTLAFIINKLGISKGALYHYFSSKEE 57 (203)
T ss_dssp HHHHHHHHHHHHHHHHHH-CSTTCCHHHHHHHHTCCHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHHc-CcccCcHHHHHHHhCCCchhHHHHcCCHHH
Confidence 455666666555542222 234568899999999999999999887543
No 239
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=35.73 E-value=15 Score=28.56 Aligned_cols=36 Identities=8% Similarity=0.028 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecc
Q 016972 243 SQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMH 286 (379)
Q Consensus 243 EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfh 286 (379)
-+++.++...++.+|.+ .+.|+.+||+|.+|..||.
T Consensus 51 ~E~~~i~~aL~~~~gn~--------~~aA~~LGIsr~tL~rklk 86 (91)
T 1ntc_A 51 LERTLLTTALRHTQGHK--------QEAARLLGWGAATLTAKLK 86 (91)
T ss_dssp HHHHHHHHHHHHTTTCT--------THHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCH--------HHHHHHHCcCHHHHHHHHH
Confidence 35566666777777654 3789999999999987764
No 240
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=35.69 E-value=7.2 Score=31.90 Aligned_cols=46 Identities=11% Similarity=0.133 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 243 SQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 243 EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
+-++++++.|.++=|+ +.-+...++++|++.||++.+|-.+|.|..
T Consensus 8 ~~r~~Il~aA~~lf~~-~G~~~~t~~~IA~~agvs~~tlY~~F~sK~ 53 (199)
T 2o7t_A 8 KRREHIITTTCNLYRT-HHHDSLTMENIAEQAGVGVATLYRNFPDRF 53 (199)
T ss_dssp HHHHHHHHHHHHHHHH-SCGGGCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHHHHHH-CCCccCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 4455666655554222 123456899999999999999999998753
No 241
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=35.62 E-value=20 Score=29.77 Aligned_cols=17 Identities=18% Similarity=0.196 Sum_probs=15.5
Q ss_pred CCCCHHHHHHHHHHHHH
Q 016972 238 TKFSQSQKEKMFEFAER 254 (379)
Q Consensus 238 TkFT~EQkekM~~faEk 254 (379)
-.+|+||++++.+.+|+
T Consensus 89 ~lLTPEQk~q~~~~~~~ 105 (108)
T 3o39_A 89 NILTPEQKKQFNANFEK 105 (108)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 67999999999998887
No 242
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=35.62 E-value=33 Score=24.85 Aligned_cols=23 Identities=9% Similarity=0.157 Sum_probs=20.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC
Q 016972 234 KRFRTKFSQSQKEKMFEFAERVG 256 (379)
Q Consensus 234 KR~RTkFT~EQkekM~~faEk~G 256 (379)
...|..||+|+=++|+++.++.|
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~G 27 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDCG 27 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHC
Confidence 56788999999999999999987
No 243
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=35.18 E-value=3.2 Score=35.15 Aligned_cols=48 Identities=15% Similarity=0.019 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccc
Q 016972 242 QSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKS 290 (379)
Q Consensus 242 ~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~ 290 (379)
.+-++++++.|.++=++ +.-+...++++|++.||++.+|-..|.|...
T Consensus 39 ~~~r~~Il~aA~~lf~~-~G~~~~t~~~IA~~Agvs~~t~Y~~F~sK~~ 86 (225)
T 2id3_A 39 ARIREAVLLAAGDALAA-DGFDALDLGEIARRAGVGKTTVYRRWGTPGG 86 (225)
T ss_dssp HHHHHHHHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHHHHCSHHH
T ss_pred hHHHHHHHHHHHHHHHH-hCcccCCHHHHHHHHCCCHHHHHHHCCCHHH
Confidence 44456666544444111 1234568899999999999999999987543
No 244
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=35.01 E-value=8.7 Score=32.36 Aligned_cols=45 Identities=11% Similarity=0.003 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 244 QKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 244 QkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
-++++++.|.++=++- .-+...++++|++.||++.+|-..|.|..
T Consensus 29 ~r~~Il~AA~~lf~~~-G~~~~t~~~IA~~aGvs~~tlY~~F~sK~ 73 (217)
T 3hta_A 29 RRQRIIDAAIRVVGQK-GIAGLSHRTVAAEADVPLGSTTYHFATLD 73 (217)
T ss_dssp HHHHHHHHHHHHHHHH-TGGGCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHHHHHc-CcccCCHHHHHHHcCCCcchhhhcCCCHH
Confidence 4555555444331111 23456899999999999999999988654
No 245
>1dj7_A Ferredoxin thioredoxin reductase: catalytic chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding MOTI electron transport; 1.60A {Synechocystis SP} SCOP: g.36.1.1 PDB: 2pu9_A 2pvo_A 2puo_A 2puk_A 2pvg_A 2pvd_A
Probab=35.01 E-value=47 Score=28.33 Aligned_cols=33 Identities=15% Similarity=0.114 Sum_probs=22.9
Q ss_pred CHHHHHHHHHH----HHHhCccCCCCCHHHHHHHHHHh
Q 016972 241 SQSQKEKMFEF----AERVGWKMQKRDDDLVHEFCNEV 274 (379)
Q Consensus 241 T~EQkekM~~f----aEk~GWRIqk~d~~~vq~fc~ei 274 (379)
+++.+++|..| |++.||++. +|++++..+-.-+
T Consensus 7 ~~~~~e~~~~f~ek~ae~~G~~~N-pD~evt~~vi~GL 43 (117)
T 1dj7_A 7 NNKTLAAMKNFAEQYAKRTDTYFC-SDLSVTAVVIEGL 43 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCBCB-SSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCEEC-CCHHHHHHHHHHH
Confidence 36777777775 889999985 6776666555444
No 246
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P structure initiative, midwest center for structural genomic binding; 2.20A {Pseudomonas aeruginosa}
Probab=34.93 E-value=1.1 Score=36.38 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 242 QSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 242 ~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
.+-++++++.|.++=++ +..+...++++|++.||++.+|-..|.|..
T Consensus 13 ~~~r~~Il~aa~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 59 (215)
T 3e7q_A 13 EQRKALLIEATLACLKR-HGFQGASVRKICAEAGVSVGLINHHYDGKD 59 (215)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHHHHHHH-cCcccCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 44566676665555111 123355789999999999999999888653
No 247
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=34.86 E-value=10 Score=32.89 Aligned_cols=14 Identities=43% Similarity=0.956 Sum_probs=11.6
Q ss_pred Cccccccccccccc
Q 016972 108 TSLKCAACGCHRNF 121 (379)
Q Consensus 108 ~ALKCAACGCHRNF 121 (379)
-.|+|.|||.+|..
T Consensus 122 ~~l~C~ACGa~~~V 135 (138)
T 1nee_A 122 SLLKCEACGAKAPL 135 (138)
T ss_dssp TEEECSTTSCCCCS
T ss_pred EEEEccCCCCCccc
Confidence 47999999998753
No 248
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=34.81 E-value=14 Score=28.99 Aligned_cols=21 Identities=24% Similarity=0.427 Sum_probs=12.3
Q ss_pred HHHHHHhCCCCceeeeecccc
Q 016972 268 HEFCNEVGVDRTVLKVWMHNN 288 (379)
Q Consensus 268 q~fc~eiGv~r~V~KVWfhNn 288 (379)
++||..+||++..|.-|..+.
T Consensus 38 ~elA~~~gis~~~is~~E~G~ 58 (114)
T 3vk0_A 38 EELARQCGLDRTYVSAVERKR 58 (114)
T ss_dssp HHHHHHHTCCHHHHHHHTTTC
T ss_pred HHHHHHHCcCHHHHHHHHcCC
Confidence 456666666666666665443
No 249
>2cki_A Ulilysin; metalloprotease, hydrolase; HET: ARG; 1.7A {Methanosarcina acetivorans} PDB: 2j83_A* 3lum_A* 3lun_A*
Probab=34.41 E-value=21 Score=33.52 Aligned_cols=18 Identities=17% Similarity=0.220 Sum_probs=16.0
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 016972 236 FRTKFSQSQKEKMFEFAE 253 (379)
Q Consensus 236 ~RTkFT~EQkekM~~faE 253 (379)
.++.||+.|+++|+.+.+
T Consensus 237 C~~~FT~gQ~~RM~~~~~ 254 (262)
T 2cki_A 237 CMVMFTQGQATRVNACLD 254 (262)
T ss_dssp TCCBCBHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHH
Confidence 468999999999999877
No 250
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=34.41 E-value=14 Score=26.83 Aligned_cols=21 Identities=10% Similarity=0.194 Sum_probs=14.5
Q ss_pred HHHHHHhCCCCceeeeecccc
Q 016972 268 HEFCNEVGVDRTVLKVWMHNN 288 (379)
Q Consensus 268 q~fc~eiGv~r~V~KVWfhNn 288 (379)
++||..+||++..|.-|..+.
T Consensus 31 ~elA~~~gis~~~is~~e~g~ 51 (83)
T 3f6w_A 31 KELAARLGRPQSFVSKTENAE 51 (83)
T ss_dssp HHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHCcCHHHHHHHHCCC
Confidence 567777777777777776654
No 251
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=34.36 E-value=10 Score=32.16 Aligned_cols=48 Identities=13% Similarity=0.193 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCC
Q 016972 238 TKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKR 295 (379)
Q Consensus 238 TkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~ 295 (379)
..+|+.+++.|.-+++-. ..++++.+++++.+++++.+.+=|.|++-+
T Consensus 158 ~~Lt~rE~~vL~~l~~g~----------s~~~Ia~~l~~s~~Tv~~~i~~l~~KL~~~ 205 (225)
T 3klo_A 158 AKLTKREQQIIKLLGSGA----------SNIEIADKLFVSENTVKTHLHNVFKKINAK 205 (225)
T ss_dssp HTSCHHHHHHHHHHTTTC----------CHHHHHHHTTCCHHHHHHHHHHHTTTSCCS
T ss_pred ccCCHHHHHHHHHHHcCC----------CHHHHHHHhCCCHHHHHHHHHHHHHHhCCC
Confidence 459999999998887521 457899999999999999999988887544
No 252
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=34.33 E-value=52 Score=26.20 Aligned_cols=36 Identities=3% Similarity=0.026 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 240 FSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 240 FT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
.|.|||++|-+. +-+.|.+.+||+...+-|.|+...
T Consensus 68 ~~~eqk~~l~~~--------------i~~~l~~~lgi~~~~v~I~~~e~~ 103 (119)
T 2os5_A 68 LSADDNIRHTQK--------------ITQFCQDTLKLPKDKVIITYFDLQ 103 (119)
T ss_dssp CCHHHHHHHHHH--------------HHHHHHHHHCCCGGGEEEEEEECC
T ss_pred CCHHHHHHHHHH--------------HHHHHHHHhCcCcccEEEEEEECC
Confidence 469999876553 335688899999999999988765
No 253
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=34.02 E-value=6.3 Score=31.35 Aligned_cols=46 Identities=9% Similarity=0.156 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 243 SQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 243 EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
+-++++.+.|.++=++ +.-+...++++|++.||++.+|-..|.|..
T Consensus 8 ~~r~~Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~ 53 (194)
T 2g7s_A 8 SKADDILQCARTLIIR-GGYNSFSYADISQVVGIRNASIHHHFPSKS 53 (194)
T ss_dssp HHHHHHHHHHHHHHHH-HCGGGCCHHHHHHHHCCCHHHHHHHCSSHH
T ss_pred hhHHHHHHHHHHHHHH-cCcccCCHHHHHHHhCCCchHHHHHcCCHH
Confidence 4556666544444111 123456899999999999999998888753
No 254
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=33.96 E-value=8.4 Score=31.78 Aligned_cols=47 Identities=19% Similarity=0.228 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccc
Q 016972 243 SQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKS 290 (379)
Q Consensus 243 EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~ 290 (379)
+-++++++.|.++=|+-.+ +...++++|++.||++.+|-.+|.|...
T Consensus 10 ~tR~~Il~aA~~lf~~~G~-~~~s~~~IA~~aGvs~~t~Y~~F~sKe~ 56 (210)
T 3vib_A 10 KTKEHLMLAALETFYRKGI-ARTSLNEIAQAAGVTRDALYWHFKNKED 56 (210)
T ss_dssp HHHHHHHHHHHHHHHHHCT-TTCCHHHHHHHHTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHHHHHHHhCc-ccCCHHHHHHHHCcCHHHHHHHCCCHHH
Confidence 3456666654444222123 4458899999999999999999987543
No 255
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=33.93 E-value=40 Score=26.51 Aligned_cols=38 Identities=16% Similarity=0.179 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCC
Q 016972 241 SQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFA 293 (379)
Q Consensus 241 T~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~ 293 (379)
|.|||++|-+. +-+.|.+.+||+...+-|-|+... .|+
T Consensus 69 ~~eqk~~l~~~--------------i~~~l~~~lgi~~~~v~I~~~e~~-~wg 106 (112)
T 3b64_A 69 GPSEPEKVTSI--------------VTAAITKECGIVADRIFVLYFSPL-HCG 106 (112)
T ss_dssp CTTHHHHHHHH--------------HHHHHHHHHCCCGGGEEEEEECCS-CCE
T ss_pred CHHHHHHHHHH--------------HHHHHHHHhCcCcceEEEEEEEhh-Hee
Confidence 57999877553 335688999999999999998877 553
No 256
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=33.89 E-value=15 Score=26.63 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=15.2
Q ss_pred HHHHHHhCCCCceeeeecccc
Q 016972 268 HEFCNEVGVDRTVLKVWMHNN 288 (379)
Q Consensus 268 q~fc~eiGv~r~V~KVWfhNn 288 (379)
++||..+||++..|.-|..+.
T Consensus 28 ~~lA~~~gis~~~i~~~e~g~ 48 (82)
T 3s8q_A 28 EDLAYKSNLDRTYISGIERNS 48 (82)
T ss_dssp HHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHhCcCHHHHHHHHCCC
Confidence 577777777777777777654
No 257
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=33.65 E-value=32 Score=25.64 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=19.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC
Q 016972 234 KRFRTKFSQSQKEKMFEFAERVG 256 (379)
Q Consensus 234 KR~RTkFT~EQkekM~~faEk~G 256 (379)
.+.|.+||+|+-++|+++.++.|
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G 30 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYG 30 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHccC
Confidence 44567899999999999999987
No 258
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=33.44 E-value=53 Score=23.01 Aligned_cols=20 Identities=10% Similarity=0.182 Sum_probs=18.5
Q ss_pred CCCCCHHHHHHHHHHHHHhC
Q 016972 237 RTKFSQSQKEKMFEFAERVG 256 (379)
Q Consensus 237 RTkFT~EQkekM~~faEk~G 256 (379)
|.+||+|+-++|.++.++.|
T Consensus 2 r~~WT~eEd~~L~~~v~~~G 21 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYG 21 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHC
Confidence 67899999999999999987
No 259
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=33.35 E-value=8.9 Score=34.17 Aligned_cols=48 Identities=17% Similarity=0.185 Sum_probs=38.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCC
Q 016972 237 RTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAK 294 (379)
Q Consensus 237 RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k 294 (379)
...+|+.|++.|.-+++ | + ..+++|.++||+++++|.-+.|-+.|++-
T Consensus 173 ~~~Lt~re~~vl~~~~~--G----~----s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 220 (237)
T 3szt_A 173 NVRLTARETEMLKWTAV--G----K----TYGEIGLILSIDQRTVKFHIVNAMRKLNS 220 (237)
T ss_dssp GCCCCHHHHHHHHHHHT--T----C----CHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHc--C----C----CHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 46788888888877653 3 2 24699999999999999999988877753
No 260
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=33.33 E-value=4.5 Score=32.65 Aligned_cols=47 Identities=15% Similarity=0.237 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 242 QSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 242 ~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
++-++++.+.|.++=++ +.-+...++++|++.||++.+|-.+|.|..
T Consensus 2 ~~~r~~Il~aa~~l~~~-~G~~~~ti~~IA~~agvs~~t~Y~~F~sK~ 48 (189)
T 3geu_A 2 NAMKDKIIDNAITLFSE-KGYDGTTLDDIAKSVNIKKASLYYHFDSKK 48 (189)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHCCHHHHHHHTTCCHHHHTTTCSSHH
T ss_pred chHHHHHHHHHHHHHHH-cCcccCCHHHHHHHhCCCHHHHHHHhCCHH
Confidence 45566666655554100 112345789999999999999999988753
No 261
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=33.22 E-value=11 Score=29.97 Aligned_cols=46 Identities=13% Similarity=0.258 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 243 SQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 243 EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
+-++++.+.|.++=++ +.-+...++++|++.||++.+|-..|.|..
T Consensus 8 ~~r~~Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~ 53 (188)
T 3qkx_A 8 DLAEQIFSATDRLMAR-EGLNQLSMLKLAKEANVAAGTIYLYFKNKD 53 (188)
T ss_dssp HHHHHHHHHHHHHHHH-SCSTTCCHHHHHHHHTCCHHHHHHHSSSHH
T ss_pred HHHHHHHHHHHHHHHh-cCcccCCHHHHHHHhCCCcchHHHHcCCHH
Confidence 4455566555544222 224456899999999999999998887654
No 262
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=32.99 E-value=3.7 Score=33.44 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=22.8
Q ss_pred CHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 263 DDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 263 d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
+...++++|++.||++.+|-..|.|..
T Consensus 27 ~~~t~~~IA~~agvs~~t~Y~~F~sK~ 53 (195)
T 3frq_A 27 IEFTLSGVAKEVGLSRAALIQRFTNRD 53 (195)
T ss_dssp HHCCHHHHHHHHTCCHHHHHHHHCSHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 345799999999999999998887754
No 263
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=32.92 E-value=9.9 Score=31.27 Aligned_cols=44 Identities=11% Similarity=0.077 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 244 QKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 244 QkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
-++++++.|.++=++-.+ . ..++++|++.||++.+|-.+|.|..
T Consensus 14 ~r~~Il~aA~~lf~~~G~-~-~t~~~IA~~agvs~~tlY~~F~sK~ 57 (196)
T 2qwt_A 14 NRARVLEVAYDTFAAEGL-G-VPMDEIARRAGVGAGTVYRHFPTKQ 57 (196)
T ss_dssp HHHHHHHHHHHHHHHTCT-T-SCHHHHHHHTTSCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHHHHhcCC-C-CCHHHHHHHhCCCHHHHHHHCCCHH
Confidence 355666655544333335 3 6899999999999999999998753
No 264
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=32.82 E-value=7.5 Score=32.51 Aligned_cols=47 Identities=6% Similarity=0.157 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCC
Q 016972 238 TKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAK 294 (379)
Q Consensus 238 TkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k 294 (379)
..+|+.+++.|.-+++.. ..+++|++++++.+++++.+.|=|.|++-
T Consensus 153 ~~Lt~rE~~vl~~l~~g~----------s~~~Ia~~l~is~~TV~~hi~~i~~Kl~~ 199 (215)
T 1a04_A 153 NQLTPRERDILKLIAQGL----------PNKMIARRLDITESTVKVHVKHMLKKMKL 199 (215)
T ss_dssp GGSCHHHHHHHHHHHTTC----------CHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHHHHcCC----------CHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 469999999998887643 36899999999999999999988887754
No 265
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=32.69 E-value=7.8 Score=34.94 Aligned_cols=52 Identities=13% Similarity=0.250 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccc
Q 016972 238 TKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKS 290 (379)
Q Consensus 238 TkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~ 290 (379)
..=..+-++++.+.|.++=++ +.-+...++++|++.||++.+|-.+|.|...
T Consensus 115 ~~~~~~~r~~il~aa~~l~~~-~G~~~~T~~~IA~~AGvs~gtlY~yF~sKe~ 166 (311)
T 4ich_A 115 GEPQSEARRRILETAWRLIAR-RGYHNVRIHDIASELGTSNATIHYHFPSKKD 166 (311)
T ss_dssp --CCHHHHHHHHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred ccchhhHHHHHHHHHHHHHHH-cCCccCCHHHHHHHhCCCchhHHHhCCCHHH
Confidence 334455666666655444111 1233468899999999999999999987543
No 266
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=32.60 E-value=9.6 Score=25.95 Aligned_cols=13 Identities=54% Similarity=0.979 Sum_probs=10.4
Q ss_pred Ccccccccccccc
Q 016972 108 TSLKCAACGCHRN 120 (379)
Q Consensus 108 ~ALKCAACGCHRN 120 (379)
-.|+|.|||=.|.
T Consensus 20 ~~l~C~aCG~~~~ 32 (36)
T 1k81_A 20 HLLKCMACGAIRP 32 (36)
T ss_dssp EEEEEETTTEEEE
T ss_pred EEEEhhcCCCccc
Confidence 3699999997664
No 267
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=32.32 E-value=67 Score=21.81 Aligned_cols=35 Identities=14% Similarity=0.206 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccc
Q 016972 240 FSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNN 288 (379)
Q Consensus 240 FT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNn 288 (379)
.|.|||++|.+. +-+.+++.+|+++..+-|-|+-.
T Consensus 14 ~s~e~k~~l~~~--------------l~~~l~~~lg~p~~~v~v~i~e~ 48 (63)
T 2x4k_A 14 RSDEQLKNLVSE--------------VTDAVEKTTGANRQAIHVVIEEM 48 (63)
T ss_dssp CCHHHHHHHHHH--------------HHHHHHHHHCCCGGGCEEEEEEE
T ss_pred CCHHHHHHHHHH--------------HHHHHHHHhCcCcccEEEEEEEc
Confidence 379999887654 34567888899998888766644
No 268
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=32.07 E-value=18 Score=27.67 Aligned_cols=43 Identities=12% Similarity=0.234 Sum_probs=26.7
Q ss_pred CCCCCHHHHHHHHHHHHHh-CccCCCCCHHHHHHHHHHh---CC-------CCceeeeeccc
Q 016972 237 RTKFSQSQKEKMFEFAERV-GWKMQKRDDDLVHEFCNEV---GV-------DRTVLKVWMHN 287 (379)
Q Consensus 237 RTkFT~EQkekM~~faEk~-GWRIqk~d~~~vq~fc~ei---Gv-------~r~V~KVWfhN 287 (379)
+.++++|+++.++++.+.. .| ..++++.++ |+ +..+|..|++.
T Consensus 73 ~~~l~~~~~~~i~~~~~~~~~~--------s~~~i~~~l~~~g~~~~~~~~s~~tv~r~l~~ 126 (128)
T 1pdn_C 73 PRIATPEIENRIEEYKRSSPGM--------FSWEIREKLIREGVCDRSTAPSVSAISRLVRG 126 (128)
T ss_dssp CCSSCSTHHHHHHHTTTTCTTC--------CHHHHHHHHHHTSSSCSTTCCCHHHHHHHC--
T ss_pred CCcCCHHHHHHHHHHHHhCcch--------HHHHHHHHHHHcCCccccCCcCHHHHHHHHHh
Confidence 3578999998888875443 22 123444444 84 77888888764
No 269
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=31.96 E-value=53 Score=29.33 Aligned_cols=47 Identities=9% Similarity=0.054 Sum_probs=31.3
Q ss_pred CCCCCHHHHHHHHHHHHHhC--------------------ccCCCCCHHHHHHHHHHhCCCCceeee
Q 016972 237 RTKFSQSQKEKMFEFAERVG--------------------WKMQKRDDDLVHEFCNEVGVDRTVLKV 283 (379)
Q Consensus 237 RTkFT~EQkekM~~faEk~G--------------------WRIqk~d~~~vq~fc~eiGv~r~V~KV 283 (379)
.--+|+||+++|++..++.- +.-.++|++.|+++.+||.--+..+.+
T Consensus 65 ~LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 65 GSPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDE 131 (175)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 35699999999887654310 223578999999999999854444433
No 270
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=31.85 E-value=1.9 Score=35.76 Aligned_cols=50 Identities=6% Similarity=0.110 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCC
Q 016972 238 TKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKRD 296 (379)
Q Consensus 238 TkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~~ 296 (379)
-+++++|++.+.-. +-+.-..+++|..+||+..++|++++.-|.++++.-
T Consensus 92 ~~Lp~~~r~vl~L~---------~~~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l 141 (157)
T 2lfw_A 92 ARMTPLSRQALLLT---------AMEGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQT 141 (157)
T ss_dssp TTSCTTHHHHHTTT---------SSSCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTS
T ss_pred HhCCHHHHHHHHHH---------HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 45778888876432 333446789999999999999999999999998765
No 271
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=31.82 E-value=3.5 Score=35.03 Aligned_cols=48 Identities=6% Similarity=0.014 Sum_probs=36.0
Q ss_pred CCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCC
Q 016972 238 TKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAK 294 (379)
Q Consensus 238 TkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k 294 (379)
.++++.|++.|.-.+. +.-..+++|..+||++..++.+++.-|.++++
T Consensus 186 ~~L~~~~r~vl~l~~~---------~g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~ 233 (239)
T 1rp3_A 186 SKLPEREKLVIQLIFY---------EELPAKEVAKILETSVSRVSQLKAKALERLRE 233 (239)
T ss_dssp TTSCHHHHHHHHHHHT---------SCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHh---------cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 3467777777766431 12245799999999999999999988877754
No 272
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=31.79 E-value=71 Score=22.69 Aligned_cols=42 Identities=5% Similarity=0.041 Sum_probs=30.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCc-cCCCCCHHHHHHHHHHhCCC
Q 016972 236 FRTKFSQSQKEKMFEFAERVGW-KMQKRDDDLVHEFCNEVGVD 277 (379)
Q Consensus 236 ~RTkFT~EQkekM~~faEk~GW-RIqk~d~~~vq~fc~eiGv~ 277 (379)
....||++|+++|+..|...-- +-.+-+...+..+...+|+.
T Consensus 4 ~~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~ 46 (86)
T 1j7q_A 4 KARALGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQT 46 (86)
T ss_dssp CCCCCSSTHHHHHHHHHHHHSTTTTSCBCHHHHHHHHHHTSCC
T ss_pred ccccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcCC
Confidence 4567899999999998876421 01256678888888888865
No 273
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=31.56 E-value=32 Score=28.30 Aligned_cols=41 Identities=12% Similarity=0.246 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHHHHHhCc---cCCCCCHHHHHHHHHHhCCCC
Q 016972 238 TKFSQSQKEKMFEFAERVGW---KMQKRDDDLVHEFCNEVGVDR 278 (379)
Q Consensus 238 TkFT~EQkekM~~faEk~GW---RIqk~d~~~vq~fc~eiGv~r 278 (379)
+.+|+||++.|++.|...-. +-.+-+..++..+.+.+|+..
T Consensus 1 sqLt~eqi~elre~F~~fD~~~d~dG~I~~~El~~~lr~lG~~~ 44 (159)
T 3i5g_C 1 SQLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNP 44 (159)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTSSSCEEGGGHHHHHHHTTCCC
T ss_pred CCCCHHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHHcCCCC
Confidence 36899999999998765311 112556667778888888753
No 274
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=31.55 E-value=16 Score=27.86 Aligned_cols=47 Identities=19% Similarity=0.025 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHHHHhC-ccCCCCCHHHHHHHHHHhCCCCceeeeecc
Q 016972 240 FSQSQKEKMFEFAERVG-WKMQKRDDDLVHEFCNEVGVDRTVLKVWMH 286 (379)
Q Consensus 240 FT~EQkekM~~faEk~G-WRIqk~d~~~vq~fc~eiGv~r~V~KVWfh 286 (379)
+|.+|++++++.|...- =+-.+-+..++.++...+|++...++.+|.
T Consensus 4 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 51 (95)
T 1c07_A 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWS 51 (95)
T ss_dssp SCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHH
Confidence 67899999999887752 001134556777777888888777766554
No 275
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=31.45 E-value=11 Score=32.75 Aligned_cols=13 Identities=31% Similarity=0.695 Sum_probs=6.0
Q ss_pred Ccccccccccccc
Q 016972 108 TSLKCAACGCHRN 120 (379)
Q Consensus 108 ~ALKCAACGCHRN 120 (379)
-.|+|.|||.+|.
T Consensus 123 ~~l~C~ACGa~~~ 135 (139)
T 3cw2_K 123 WYIVCLACGAQTP 135 (139)
T ss_dssp TTSSCCC------
T ss_pred EEEEecCCCCCCc
Confidence 4699999998875
No 276
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=30.89 E-value=37 Score=29.38 Aligned_cols=23 Identities=4% Similarity=0.083 Sum_probs=20.8
Q ss_pred CCCHHHHHHHHHHHHHhCccCCC
Q 016972 239 KFSQSQKEKMFEFAERVGWKMQK 261 (379)
Q Consensus 239 kFT~EQkekM~~faEk~GWRIqk 261 (379)
.||+||+..++.--++.||.|..
T Consensus 133 ~fseeql~~~~~~l~~~g~~~~~ 155 (159)
T 1p2x_A 133 SFTDEDVSIIVRRLRQSNVILPN 155 (159)
T ss_dssp CCCHHHHHHHHHHHHHCCCCCCC
T ss_pred CCCHHHHHHHHHHHHHcCCCCCC
Confidence 89999999999999999988754
No 277
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=30.84 E-value=11 Score=27.91 Aligned_cols=53 Identities=6% Similarity=0.033 Sum_probs=36.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCc-cCCCCCHHHHHHHHHHhCCCCceeeeecc
Q 016972 234 KRFRTKFSQSQKEKMFEFAERVGW-KMQKRDDDLVHEFCNEVGVDRTVLKVWMH 286 (379)
Q Consensus 234 KR~RTkFT~EQkekM~~faEk~GW-RIqk~d~~~vq~fc~eiGv~r~V~KVWfh 286 (379)
...-..|+.+|+++|+.+|...-- +-.+-+..++..++..+|++...++.+|.
T Consensus 15 ~~~~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 15 YFQGADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp ----CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHhccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 334457899999999998887530 11245567888888999988777776664
No 278
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=30.76 E-value=77 Score=28.53 Aligned_cols=42 Identities=12% Similarity=0.158 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHH-HHHHhCccCCCCCH-HHHHHHHHHhCCCCce
Q 016972 239 KFSQSQKEKMFE-FAERVGWKMQKRDD-DLVHEFCNEVGVDRTV 280 (379)
Q Consensus 239 kFT~EQkekM~~-faEk~GWRIqk~d~-~~vq~fc~eiGv~r~V 280 (379)
.||.+|..+|+. ..+.++|++..+.. .-++.|++.++++..+
T Consensus 125 ~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~ 168 (257)
T 1g3n_C 125 SFSRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLVGGSQH 168 (257)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHSCSSTT
T ss_pred CCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhH
Confidence 589999999998 78999999998776 6789999999987654
No 279
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=30.68 E-value=4.4 Score=32.30 Aligned_cols=46 Identities=13% Similarity=0.190 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 243 SQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 243 EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
+-++++.+.|.++=++ +.-+...++++|++.||++.+|-.+|.|..
T Consensus 8 ~~r~~Il~aa~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 53 (195)
T 3pas_A 8 SKRIAFLEATVREVAD-HGFSATSVGKIAKAAGLSPATLYIYYEDKE 53 (195)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHCCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHHHHHH-cChHhcCHHHHHHHhCCCchHHHHHcCCHH
Confidence 4456666655554111 112345799999999999999999998753
No 280
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=30.62 E-value=21 Score=24.90 Aligned_cols=21 Identities=10% Similarity=0.131 Sum_probs=12.7
Q ss_pred HHHHHHhC--CCCceeeeecccc
Q 016972 268 HEFCNEVG--VDRTVLKVWMHNN 288 (379)
Q Consensus 268 q~fc~eiG--v~r~V~KVWfhNn 288 (379)
++||..+| |++.+|.-|..+.
T Consensus 25 ~~lA~~~g~~is~~~i~~~e~g~ 47 (71)
T 2ewt_A 25 HGVEEKSQGRWKAVVVGSYERGD 47 (71)
T ss_dssp HHHHHHTTTSSCHHHHHHHHHTC
T ss_pred HHHHHHHCCcCCHHHHHHHHCCC
Confidence 45666666 6666666665543
No 281
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=30.42 E-value=2.5 Score=35.77 Aligned_cols=28 Identities=4% Similarity=0.190 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHhCCCCceeeeecccccc
Q 016972 263 DDDLVHEFCNEVGVDRTVLKVWMHNNKS 290 (379)
Q Consensus 263 d~~~vq~fc~eiGv~r~V~KVWfhNnK~ 290 (379)
+...++++|++.||++.+|-..|.|...
T Consensus 49 ~~~s~~~IA~~aGvs~~tlY~~F~sK~~ 76 (226)
T 2pz9_A 49 AGARVDRIAKQARTSKERVYAYFRSKEA 76 (226)
T ss_dssp HHCCHHHHHHHTTSCHHHHHHHCSSHHH
T ss_pred ccCcHHHHHHHHCCChHHHHHHcCCHHH
Confidence 3457899999999999999999877543
No 282
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=30.41 E-value=17 Score=24.75 Aligned_cols=10 Identities=50% Similarity=0.939 Sum_probs=8.5
Q ss_pred CCcccccccc
Q 016972 107 PTSLKCAACG 116 (379)
Q Consensus 107 p~ALKCAACG 116 (379)
.+++||.||.
T Consensus 19 ~~~~kC~aCe 28 (34)
T 3gj5_B 19 ADSTKCIACE 28 (34)
T ss_dssp SSCSBCTTTC
T ss_pred cccCEEcccC
Confidence 4589999996
No 283
>3mf7_A CIS-3-chloroacrylic acid dehalogenase; beta-alpha-beta motif, tautomerase, CIS-3-CHLO acid dehalogenase, isomerase, hydrolase; HET: PR4; 1.65A {Coryneform bacterium} PDB: 3mf8_A 2flt_A 2flz_A
Probab=30.09 E-value=45 Score=28.61 Aligned_cols=37 Identities=11% Similarity=0.183 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccc
Q 016972 238 TKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNN 288 (379)
Q Consensus 238 TkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNn 288 (379)
..||+|||++|-+- +-+.++.-+|+++.-+.|.|+--
T Consensus 10 ~~~t~eqK~aLa~~--------------It~a~~e~~~vP~~~v~Vif~e~ 46 (149)
T 3mf7_A 10 DRLTPSAKHAVAKA--------------ITDAHRGLTGTQHFLAQVNFQEQ 46 (149)
T ss_dssp TTSCHHHHHHHHHH--------------HHHHHHHTCCTTCCCCEEEEEEE
T ss_pred CCCCHHHHHHHHHH--------------HHHHHHHHHCcChHHEEEEEEEc
Confidence 46899999886543 33578888899999999999864
No 284
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=29.92 E-value=3.2 Score=33.52 Aligned_cols=27 Identities=11% Similarity=0.196 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 263 DDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 263 d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
+...++++|++.||++.+|-.+|.|..
T Consensus 33 ~~~t~~~IA~~agvs~~t~Y~~F~sK~ 59 (191)
T 4aci_A 33 EGATVRRLEEATGKSRGAIFHHFGDKE 59 (191)
T ss_dssp HHCCHHHHHHHHTCCHHHHHHHHSSHH
T ss_pred ccCCHHHHHHHHCCCchHHHHHCCCHH
Confidence 345889999999999999999987643
No 285
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=29.87 E-value=50 Score=25.99 Aligned_cols=36 Identities=8% Similarity=0.209 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 240 FSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 240 FT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
.|.|||++|-+. +-+.|++.+||+...+-|.|+...
T Consensus 68 ~t~eqk~~l~~~--------------i~~~l~~~lgi~~~~v~I~~~e~~ 103 (115)
T 2xcz_A 68 LDGSRTQEVSEL--------------VCGHIEQNLGIPADRIYIGFEDVP 103 (115)
T ss_dssp CCTTHHHHHHHH--------------HHHHHHHHHCCCGGGEEEEEEECC
T ss_pred CCHHHHHHHHHH--------------HHHHHHHHhCcCcccEEEEEEECC
Confidence 468999776553 335678889999999999988664
No 286
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=29.75 E-value=31 Score=25.05 Aligned_cols=41 Identities=10% Similarity=0.076 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 238 TKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 238 TkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
-.||.+++..++. +.||. .++||..+||++..|.-|-.+.+
T Consensus 9 ~~~~g~~lr~~R~---~~glt--------q~elA~~~gvs~~tis~~E~G~~ 49 (73)
T 3fmy_A 9 ETVAPEFIVKVRK---KLSLT--------QKEASEIFGGGVNAFSRYEKGNA 49 (73)
T ss_dssp CCCCHHHHHHHHH---HTTCC--------HHHHHHHHCSCTTHHHHHHTTSS
T ss_pred CCCCHHHHHHHHH---HcCCC--------HHHHHHHhCcCHHHHHHHHcCCC
Confidence 5788888776654 45532 47899999999999999987654
No 287
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=29.63 E-value=11 Score=30.99 Aligned_cols=45 Identities=13% Similarity=0.171 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 244 QKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 244 QkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
-++++++.|.++=|+- .-+...++++|++.||++.+|=..|.|..
T Consensus 10 ~r~~Il~aA~~lf~~~-G~~~~t~~~Ia~~Agvs~gt~Y~yF~sKe 54 (204)
T 3anp_C 10 RRERIFRAAMELFRNR-GFQETTATEIAKAAHVSRGTFFNYYPYKE 54 (204)
T ss_dssp HHHHHHHHHHHHHHHH-CTTTCCHHHHHHHHTSCHHHHHHHCSSTH
T ss_pred HHHHHHHHHHHHHHHc-CcccccHHHHHHHcCCchHHHHHHcCCHH
Confidence 3455555444432221 23456899999999999999998887753
No 288
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=29.54 E-value=16 Score=27.56 Aligned_cols=48 Identities=10% Similarity=-0.006 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHHHHHhCc-cCCCCCHHHHHHHHHHhCCCCceeeeecc
Q 016972 239 KFSQSQKEKMFEFAERVGW-KMQKRDDDLVHEFCNEVGVDRTVLKVWMH 286 (379)
Q Consensus 239 kFT~EQkekM~~faEk~GW-RIqk~d~~~vq~fc~eiGv~r~V~KVWfh 286 (379)
.+|++|++++++.|...-= +-.+-+.+++.++...+|++...++.+|.
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 50 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWE 50 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3688999999888876520 00123446777777788887766665543
No 289
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=29.51 E-value=15 Score=28.17 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhCccCCCCC-HHHHHHHHHHhCCCCceeeeeccc
Q 016972 244 QKEKMFEFAERVGWKMQKRD-DDLVHEFCNEVGVDRTVLKVWMHN 287 (379)
Q Consensus 244 QkekM~~faEk~GWRIqk~d-~~~vq~fc~eiGv~r~V~KVWfhN 287 (379)
-.+++.++-+.. +.+ .-.++++|+++||+++.|+-.|.-
T Consensus 3 ~~~~i~~~i~~~-----~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 42 (103)
T 3lsg_A 3 AKELIQNIIEES-----YTDSQFTLSVLSEKLDLSSGYLSIMFKK 42 (103)
T ss_dssp HHHHHHHHHHHH-----TTCTTCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----ccCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 356677777665 333 346889999999999888766653
No 290
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=29.44 E-value=15 Score=32.36 Aligned_cols=13 Identities=46% Similarity=0.920 Sum_probs=10.8
Q ss_pred Ccccccccccccc
Q 016972 108 TSLKCAACGCHRN 120 (379)
Q Consensus 108 ~ALKCAACGCHRN 120 (379)
-.|+|.|||..|.
T Consensus 124 ~~l~C~ACGa~~~ 136 (148)
T 2d74_B 124 HFLKCEACGAETP 136 (148)
T ss_dssp BCCCCSSSCCCCC
T ss_pred EEEEecCCCCCcc
Confidence 4699999998764
No 291
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=29.37 E-value=33 Score=24.81 Aligned_cols=39 Identities=10% Similarity=0.095 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecc
Q 016972 239 KFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMH 286 (379)
Q Consensus 239 kFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfh 286 (379)
.+..-+++.+....++. | .+.+.|+.+||++.+|..||.
T Consensus 17 ~l~~~Er~~I~~aL~~~-g--------n~~~aA~~LGIsr~tL~rklk 55 (61)
T 1g2h_A 17 IIGFYEAQVLKLFYAEY-P--------STRKLAQRLGVSHTAIANKLK 55 (61)
T ss_dssp SCSHHHHHHHHHHHHHS-C--------SHHHHHHHTTSCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-C--------CHHHHHHHhCCCHHHHHHHHH
Confidence 34455677777777776 3 256889999999999988775
No 292
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=29.33 E-value=1.1e+02 Score=23.98 Aligned_cols=59 Identities=12% Similarity=0.187 Sum_probs=37.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHH----HHHHHhCCCC-ceeeeecccccc
Q 016972 232 GRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVH----EFCNEVGVDR-TVLKVWMHNNKS 290 (379)
Q Consensus 232 ~kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq----~fc~eiGv~r-~V~KVWfhNnK~ 290 (379)
.+||.|+...+++=+.|..+.+..-++=-.....+++ +|+.++|++. .+=.-|+++=+.
T Consensus 65 ~~kr~r~~~~~~~E~~L~~Wi~~~~~~g~pvs~~~I~~kA~~i~~~~g~~~f~~S~gWl~~F~~ 128 (131)
T 1hlv_A 65 CRKTNKLSPYDKLEGLLIAWFQQIRAAGLPVKGIILKEKALRIAEELGMDDFTASNGWLDRFRR 128 (131)
T ss_dssp TCCCCCCCTTHHHHHHHHHHHHHHGGGTCCCCHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHH
T ss_pred hhcccCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 4688888889998888888887765432234454544 5667778762 122347766443
No 293
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=29.27 E-value=10 Score=30.93 Aligned_cols=27 Identities=7% Similarity=0.145 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 263 DDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 263 d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
+...++++|++.||++.+|-.+|.|.-
T Consensus 23 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 49 (185)
T 2yve_A 23 ETLSYDSLAEATGLSKSGLIYHFPSRH 49 (185)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHCSSHH
T ss_pred hhccHHHHHHHhCCChHHHHHhCcCHH
Confidence 456889999999999999999998743
No 294
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=29.27 E-value=44 Score=27.66 Aligned_cols=26 Identities=27% Similarity=0.532 Sum_probs=22.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhC
Q 016972 231 GGRKRFRTKFSQSQKEKMFEFAERVG 256 (379)
Q Consensus 231 ~~kKR~RTkFT~EQkekM~~faEk~G 256 (379)
..++|.|.+||.|+-+.|.+..++.|
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G 32 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLG 32 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHC
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhC
Confidence 45688999999999999999999987
No 295
>1t8t_A Heparan sulfate D-glucosaminyl 3-O- sulfotransferase 3A1; alpha-beta motif, substrate-binding cleft; HET: A3P CIT; 1.85A {Homo sapiens} SCOP: c.37.1.5 PDB: 1t8u_A*
Probab=29.17 E-value=83 Score=27.68 Aligned_cols=35 Identities=17% Similarity=0.259 Sum_probs=28.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCC
Q 016972 233 RKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDR 278 (379)
Q Consensus 233 kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r 278 (379)
+.|.|..+++|++++|.+|++. ..++|.+.+|.+-
T Consensus 233 ~~~~~~~l~~e~~~~L~~~~~~-----------~~~~L~~l~g~~~ 267 (271)
T 1t8t_A 233 KGRTHPEIDREVVRRLREFYRP-----------FNLKFYQMTGHDF 267 (271)
T ss_dssp SSCCCCCCCHHHHHHHHHHHHH-----------HHHHHHHHHTCCC
T ss_pred cCCCCCCCCHHHHHHHHHHHHH-----------HHHHHHHHHCcCC
Confidence 3567789999999999998776 4678888888753
No 296
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=29.09 E-value=12 Score=31.08 Aligned_cols=47 Identities=19% Similarity=0.263 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 242 QSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 242 ~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
.+-++++++.|.++=|+- .-+...++++|++.||++.+|-..|.|..
T Consensus 10 ~~~r~~Il~aA~~lf~~~-G~~~~s~~~IA~~aGvskgtlY~~F~sKe 56 (210)
T 2wui_A 10 QKTRDGILDAAERVFLEK-GVGTTAMADLADAAGVSRGAVYGHYKNKI 56 (210)
T ss_dssp THHHHHHHHHHHHHHHHS-CTTTCCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHHHHHHHc-CccccCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 344666666555552222 23456889999999999999999998754
No 297
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=29.05 E-value=17 Score=26.64 Aligned_cols=24 Identities=38% Similarity=0.856 Sum_probs=17.0
Q ss_pred ccCccccccCCCCCCCCCCccccccc--cccccc
Q 016972 90 LDGCGEFMPSPTATPSDPTSLKCAAC--GCHRNF 121 (379)
Q Consensus 90 vDGCGEFMPSGeegt~dp~ALKCAAC--GCHRNF 121 (379)
=|=||+|| .. ..|+|..| .||+-=
T Consensus 25 C~~C~~~i--~k------qg~kC~~C~~~cH~kC 50 (59)
T 1rfh_A 25 CDLCGREV--LR------QALRCANCKFTCHSEC 50 (59)
T ss_dssp CTTTCSEE--CS------CCEECTTTSCEECHHH
T ss_pred chhcchhh--hh------CccEeCCCCCeEehhh
Confidence 57799999 22 36999998 455543
No 298
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=28.83 E-value=51 Score=22.55 Aligned_cols=24 Identities=13% Similarity=0.249 Sum_probs=21.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC
Q 016972 233 RKRFRTKFSQSQKEKMFEFAERVG 256 (379)
Q Consensus 233 kKR~RTkFT~EQkekM~~faEk~G 256 (379)
..|+--+++.|.+++|.++|++.|
T Consensus 9 ~~~i~vrl~~el~~~l~~~a~~~g 32 (55)
T 2k9i_A 9 GIKLGVYIPQEWHDRLMEIAKEKN 32 (55)
T ss_dssp CEEEEEEECHHHHHHHHHHHHHHT
T ss_pred cceEEEEcCHHHHHHHHHHHHHhC
Confidence 457777899999999999999998
No 299
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=28.82 E-value=37 Score=28.53 Aligned_cols=26 Identities=19% Similarity=0.474 Sum_probs=20.2
Q ss_pred HHHHHHHHhCCCCceeeeeccccccc
Q 016972 266 LVHEFCNEVGVDRTVLKVWMHNNKST 291 (379)
Q Consensus 266 ~vq~fc~eiGv~r~V~KVWfhNnK~k 291 (379)
+.+.||++.||+...|+.||...|-.
T Consensus 66 Lm~aY~er~Gl~~~~irFlFDG~rI~ 91 (115)
T 3kyd_D 66 LKESYCQRQGVPMNSLRFLFEGQRIA 91 (115)
T ss_dssp HHHHHHHHHTCCTTSEEEEETTEECC
T ss_pred HHHHHHHHhCCChhhEEEEECCeECC
Confidence 34456777788999999999888753
No 300
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=28.76 E-value=7.8 Score=31.05 Aligned_cols=28 Identities=11% Similarity=0.146 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 262 RDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 262 ~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
-+...++++|++.||++.+|-..|.|..
T Consensus 26 ~~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 53 (183)
T 1zk8_A 26 VQEVTLASLAQTLGVRSPSLYNHVKGLQ 53 (183)
T ss_dssp GGGCCHHHHHHHHTSCHHHHTTTCSSHH
T ss_pred ccccCHHHHHHHcCCCchHHHHHcCCHH
Confidence 3456889999999999999999998753
No 301
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=28.75 E-value=15 Score=33.14 Aligned_cols=15 Identities=27% Similarity=0.618 Sum_probs=12.0
Q ss_pred Ccccccccccccccc
Q 016972 108 TSLKCAACGCHRNFH 122 (379)
Q Consensus 108 ~ALKCAACGCHRNFH 122 (379)
-.|+|.|||.+|.-.
T Consensus 118 ~~l~C~ACGa~~~V~ 132 (170)
T 2g2k_A 118 IGNSCKACGYRGMLD 132 (170)
T ss_dssp EEEEETTTCCCCCSC
T ss_pred EEEEccccCCccccc
Confidence 369999999987653
No 302
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=28.54 E-value=12 Score=32.18 Aligned_cols=43 Identities=12% Similarity=0.042 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccc
Q 016972 239 KFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKS 290 (379)
Q Consensus 239 kFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~ 290 (379)
++++++.+++.++..+ | ..+.++|+++||++.+|.-|+.+.+.
T Consensus 142 ~~~~~~~~~i~~l~~~-G--------~s~~~Ia~~l~vs~~Tvyr~l~~~~~ 184 (193)
T 3uj3_X 142 KLTKAEWEQAGRLLAQ-G--------IPRKQVALIYDVALSTLYKKHPAKRA 184 (193)
T ss_dssp ----------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHc-C--------CCHHHHHHHHCcCHHHHHHHHHHhhh
Confidence 4677777666554321 2 35678999999999999999987764
No 303
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=28.46 E-value=64 Score=23.01 Aligned_cols=23 Identities=13% Similarity=0.359 Sum_probs=20.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC
Q 016972 234 KRFRTKFSQSQKEKMFEFAERVG 256 (379)
Q Consensus 234 KR~RTkFT~EQkekM~~faEk~G 256 (379)
...|..||+|+-++|+++.++.|
T Consensus 5 ~~~k~~Wt~eED~~L~~~v~~~G 27 (60)
T 2d9a_A 5 SSGKVKWTHEEDEQLRALVRQFG 27 (60)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhC
Confidence 45577999999999999999987
No 304
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=28.41 E-value=66 Score=25.82 Aligned_cols=35 Identities=11% Similarity=0.333 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 241 SQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 241 T~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
|.|||++|-+. +.+.|++.+|++...+-|-|....
T Consensus 71 t~eqK~~l~~~--------------l~~~l~~~lg~~~~~v~V~i~e~~ 105 (128)
T 1mww_A 71 MEGTKKRLIKM--------------LFSELEYKLGIRAHDVEITIKEQP 105 (128)
T ss_dssp CHHHHHHHHHH--------------HHHHHHHHHCCCGGGEEEEEEEEC
T ss_pred CHHHHHHHHHH--------------HHHHHHHHhCcChhhEEEEEEECC
Confidence 89999887653 456788899999999998887654
No 305
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Probab=28.40 E-value=38 Score=26.34 Aligned_cols=41 Identities=17% Similarity=0.307 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHHHHHhCc---cCCCCCHHHHHHHHHHhCCCC
Q 016972 238 TKFSQSQKEKMFEFAERVGW---KMQKRDDDLVHEFCNEVGVDR 278 (379)
Q Consensus 238 TkFT~EQkekM~~faEk~GW---RIqk~d~~~vq~fc~eiGv~r 278 (379)
|.||++|+++|++.|...-- +-.+-+..++..+...+|+..
T Consensus 1 ~~ls~~~~~~l~~~F~~~D~~~d~~G~i~~~el~~~l~~~g~~~ 44 (156)
T 1wdc_C 1 PKLSQDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINP 44 (156)
T ss_dssp --CCHHHHHHHHHHHHHHHHHTCSSSCEEGGGHHHHHHHTTCCC
T ss_pred CCCCHHHHHHHHHHHHHHccCCCCCCCCcHHHHHHHHHHcCCCC
Confidence 57999999999998876531 122455567777777777653
No 306
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=28.04 E-value=11 Score=31.16 Aligned_cols=47 Identities=15% Similarity=0.241 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCC
Q 016972 239 KFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKR 295 (379)
Q Consensus 239 kFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~ 295 (379)
.+|..+++.|.-+++. + ..++++++++++.+++++.+.|=+.|+.-+
T Consensus 142 ~Lt~rE~~vl~~l~~g------~----s~~~Ia~~l~is~~TV~~~~~~i~~Kl~~~ 188 (208)
T 1yio_A 142 SLTGREQQVLQLTIRG------L----MNKQIAGELGIAEVTVKVHRHNIMQKLNVR 188 (208)
T ss_dssp TSCHHHHHHHHHHTTT------C----CHHHHHHHHTCCHHHHHHHHHHHHHHTTCS
T ss_pred hcCHHHHHHHHHHHcC------C----cHHHHHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence 4788888877766542 1 346899999999999999999988888643
No 307
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=27.99 E-value=24 Score=23.44 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=20.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC
Q 016972 233 RKRFRTKFSQSQKEKMFEFAERVG 256 (379)
Q Consensus 233 kKR~RTkFT~EQkekM~~faEk~G 256 (379)
+||+--+|..|.+++|.++|++.|
T Consensus 2 k~ritv~l~~~l~~~Ld~~a~~~g 25 (45)
T 2cpg_A 2 KKRLTITLSESVLENLEKMAREMG 25 (45)
T ss_dssp EEEEEEEEEHHHHHHHHHHHHHHT
T ss_pred CceEEEecCHHHHHHHHHHHHHHC
Confidence 456667788999999999999998
No 308
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=27.97 E-value=32 Score=29.46 Aligned_cols=42 Identities=12% Similarity=0.208 Sum_probs=29.7
Q ss_pred CCCHHHHH---HHHHHHHHhCccCCCCCHHHHHHHHHHhCCC-Cceeeeecc
Q 016972 239 KFSQSQKE---KMFEFAERVGWKMQKRDDDLVHEFCNEVGVD-RTVLKVWMH 286 (379)
Q Consensus 239 kFT~EQke---kM~~faEk~GWRIqk~d~~~vq~fc~eiGv~-r~V~KVWfh 286 (379)
.+|..|++ +|+++-++.|+. + ..++||+.+||+ +..|.-|+.
T Consensus 3 ~lt~~q~~i~~~i~~~~~~~g~~---p---s~~elA~~lgiss~~tv~~~~~ 48 (202)
T 1jhf_A 3 ALTARQQEVFDLIRDHISQTGMP---P---TRAEIAQRLGFRSPNAAEEHLK 48 (202)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSC---C---CHHHHHHHTTCSSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhCCC---c---cHHHHHHHhCCCChHHHHHHHH
Confidence 47888875 444555556631 1 257899999999 899988875
No 309
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=27.78 E-value=1.2e+02 Score=22.93 Aligned_cols=40 Identities=10% Similarity=-0.049 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHHHHHhC-ccCCCCCHHHHHHHHHHhCCC
Q 016972 238 TKFSQSQKEKMFEFAERVG-WKMQKRDDDLVHEFCNEVGVD 277 (379)
Q Consensus 238 TkFT~EQkekM~~faEk~G-WRIqk~d~~~vq~fc~eiGv~ 277 (379)
+.||++|+++++..|...- =+-.+-+..++..+...+|+.
T Consensus 3 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~ 43 (153)
T 3ox6_A 3 RSLRPEEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYM 43 (153)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHTTCC
T ss_pred ccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCC
Confidence 4689999999988776641 012256667777777777654
No 310
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=27.72 E-value=77 Score=28.76 Aligned_cols=42 Identities=10% Similarity=0.256 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHH-HHHHhCccCCCCCH-HHHHHHHHHhCCCCce
Q 016972 239 KFSQSQKEKMFE-FAERVGWKMQKRDD-DLVHEFCNEVGVDRTV 280 (379)
Q Consensus 239 kFT~EQkekM~~-faEk~GWRIqk~d~-~~vq~fc~eiGv~r~V 280 (379)
.||.+|..+|+. ..+.++|+|..+.. .-+..|++.++++..+
T Consensus 131 ~~~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~ 174 (271)
T 2w96_A 131 SIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEEN 174 (271)
T ss_dssp SSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTSCCCHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCchH
Confidence 689999999988 78999999998776 5788999999887653
No 311
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=27.71 E-value=23 Score=26.32 Aligned_cols=19 Identities=5% Similarity=0.219 Sum_probs=11.0
Q ss_pred CCHHHHHHHHHHhCCCCce
Q 016972 262 RDDDLVHEFCNEVGVDRTV 280 (379)
Q Consensus 262 ~d~~~vq~fc~eiGv~r~V 280 (379)
+....+.++|+.+||+..-
T Consensus 53 p~~~~l~~la~~l~v~~~~ 71 (91)
T 1x57_A 53 PNNQVLGKIERAIGLKLRG 71 (91)
T ss_dssp CCHHHHHHHHHHHTBCCSS
T ss_pred CCHHHHHHHHHHHCcCHHH
Confidence 4555666666666665543
No 312
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.69 E-value=15 Score=32.72 Aligned_cols=15 Identities=27% Similarity=0.618 Sum_probs=12.4
Q ss_pred Ccccccccccccccc
Q 016972 108 TSLKCAACGCHRNFH 122 (379)
Q Consensus 108 ~ALKCAACGCHRNFH 122 (379)
-.|+|.|||.+|..-
T Consensus 125 ~~l~C~ACGa~~~V~ 139 (157)
T 2e9h_A 125 IGNSCKACGYRGMLD 139 (157)
T ss_dssp EEEECSSSCCEEECC
T ss_pred EEEEccCCCCCCccc
Confidence 368999999988765
No 313
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=27.12 E-value=15 Score=29.77 Aligned_cols=31 Identities=13% Similarity=0.310 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHhCCCCceeeeecccccccC
Q 016972 262 RDDDLVHEFCNEVGVDRTVLKVWMHNNKSTF 292 (379)
Q Consensus 262 ~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~ 292 (379)
-+...++++|++.||++.+|-..|.|...-+
T Consensus 25 ~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~Ll 55 (195)
T 2dg7_A 25 YDNVTVTDIAERAGLTRRSYFRYFPDKREVL 55 (195)
T ss_dssp GGGCCHHHHHHHTTCCHHHHHHHCSSTTGGG
T ss_pred ccccCHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 3456889999999999999999998865544
No 314
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=27.05 E-value=25 Score=27.85 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccc
Q 016972 262 RDDDLVHEFCNEVGVDRTVLKVWMHN 287 (379)
Q Consensus 262 ~d~~~vq~fc~eiGv~r~V~KVWfhN 287 (379)
-+...++++|++.||++.+|-..|.|
T Consensus 24 ~~~~t~~~Ia~~agvs~~t~Y~~F~~ 49 (191)
T 1sgm_A 24 YHATGLNQIVKESGAPKGSLYHFFPN 49 (191)
T ss_dssp TTTCCHHHHHHHHCCCSCHHHHSTTT
T ss_pred ccccCHHHHHHHHCCCchhHHHHccc
Confidence 34558899999999999999999998
No 315
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=27.02 E-value=67 Score=24.89 Aligned_cols=43 Identities=16% Similarity=0.089 Sum_probs=27.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCc-cCCCCCHHHHHHHHHHhCCC
Q 016972 235 RFRTKFSQSQKEKMFEFAERVGW-KMQKRDDDLVHEFCNEVGVD 277 (379)
Q Consensus 235 R~RTkFT~EQkekM~~faEk~GW-RIqk~d~~~vq~fc~eiGv~ 277 (379)
+.++.||.+|+++|+..|...-= +-.+-+..++..+...+|+.
T Consensus 5 ~~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~ 48 (153)
T 2ovk_B 5 PRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRV 48 (153)
T ss_dssp --CTTCCHHHHHHHHHHHHHHCCSTTTCCCHHHHHHHTTTTTSC
T ss_pred cccCCCCHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHhCCC
Confidence 44789999999999998887520 01245556666666666643
No 316
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=26.95 E-value=21 Score=24.08 Aligned_cols=10 Identities=50% Similarity=1.275 Sum_probs=8.5
Q ss_pred CCcccccccc
Q 016972 107 PTSLKCAACG 116 (379)
Q Consensus 107 p~ALKCAACG 116 (379)
++++||.||.
T Consensus 19 ~~~~kC~aC~ 28 (33)
T 3gj3_B 19 PEAVKCVACE 28 (33)
T ss_dssp TTCSBCTTTC
T ss_pred cccCEEcccC
Confidence 5689999996
No 317
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=26.79 E-value=24 Score=25.97 Aligned_cols=47 Identities=11% Similarity=0.050 Sum_probs=25.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHh--Cc---cCCCCCHHHHHHHHHHhCCCCc
Q 016972 233 RKRFRTKFSQSQKEKMFEFAERV--GW---KMQKRDDDLVHEFCNEVGVDRT 279 (379)
Q Consensus 233 kKR~RTkFT~EQkekM~~faEk~--GW---RIqk~d~~~vq~fc~eiGv~r~ 279 (379)
..|.+..+|++|+.++....... .| +...+....+.+||+.+||+..
T Consensus 17 ~~R~~~gltq~elA~~~gis~~~is~~E~G~~~~p~~~~l~~ia~~l~v~~~ 68 (78)
T 3qq6_A 17 QYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVH 68 (78)
T ss_dssp HHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSCCCCBHHHHHHHHHHHTCCHH
T ss_pred HHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHHCcCHH
Confidence 45555667777766554211100 01 1234666777777777777643
No 318
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=26.76 E-value=40 Score=24.94 Aligned_cols=27 Identities=11% Similarity=0.419 Sum_probs=21.7
Q ss_pred HHHHHHHHHhCCCCceeeeeccccccc
Q 016972 265 DLVHEFCNEVGVDRTVLKVWMHNNKST 291 (379)
Q Consensus 265 ~~vq~fc~eiGv~r~V~KVWfhNnK~k 291 (379)
.+.+.||++.||+...++.+|...|-.
T Consensus 26 kl~~~y~~~~gi~~~~~rf~fdG~~l~ 52 (72)
T 1wm3_A 26 KLMKAYCERQGLSMRQIRFRFDGQPIN 52 (72)
T ss_dssp HHHHHHHHHHTCCTTTCEEEETTEECC
T ss_pred HHHHHHHHHhCCCcceEEEEECCEEcC
Confidence 456677888889999999999888753
No 319
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=26.76 E-value=22 Score=29.36 Aligned_cols=28 Identities=7% Similarity=0.286 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHhCCCCceeeeecccccc
Q 016972 263 DDDLVHEFCNEVGVDRTVLKVWMHNNKS 290 (379)
Q Consensus 263 d~~~vq~fc~eiGv~r~V~KVWfhNnK~ 290 (379)
+...++++|++.||++..|-..|.|...
T Consensus 30 ~~ts~~~IA~~aGvsk~tlY~~F~sKe~ 57 (202)
T 2i10_A 30 EGTSITDLTKALGINPPSLYAAFGSKRD 57 (202)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHCSHHH
T ss_pred ccCCHHHHHHHhCCChHHHHHHhCCHHH
Confidence 4568899999999999999988876543
No 320
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=26.37 E-value=63 Score=22.75 Aligned_cols=42 Identities=7% Similarity=0.077 Sum_probs=28.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCc-cCCCCCHHHHHHHHHHhCCC
Q 016972 236 FRTKFSQSQKEKMFEFAERVGW-KMQKRDDDLVHEFCNEVGVD 277 (379)
Q Consensus 236 ~RTkFT~EQkekM~~faEk~GW-RIqk~d~~~vq~fc~eiGv~ 277 (379)
....||++|+++|+..|...-- +-.+-+..++..++..+|+.
T Consensus 4 ~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~ 46 (85)
T 2ktg_A 4 QKKVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGAN 46 (85)
T ss_dssp CCCSSSHHHHHHHHHHHHHTCTTCCSEEEHHHHHHHHHTTSSC
T ss_pred hhhhCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCC
Confidence 4567999999999999887530 01134457777788877754
No 321
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=26.36 E-value=28 Score=26.60 Aligned_cols=20 Identities=15% Similarity=0.373 Sum_probs=10.5
Q ss_pred HHHHHHhCCCCceeeeeccc
Q 016972 268 HEFCNEVGVDRTVLKVWMHN 287 (379)
Q Consensus 268 q~fc~eiGv~r~V~KVWfhN 287 (379)
++||..+||++.+|.-|..+
T Consensus 35 ~~lA~~~gis~~~is~~e~g 54 (104)
T 3cec_A 35 ANFAEILGVSNQTIQEVING 54 (104)
T ss_dssp HHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHCcCHHHHHHHHcC
Confidence 45555555555555555544
No 322
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=26.31 E-value=9 Score=33.82 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=31.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 234 KRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 234 KR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
++.|...|.++ +.+.|.++=.+ ...+...++++|+++||++..|-.+|.|..
T Consensus 23 ~~~~~~~tr~~---Il~aA~~l~~~-~G~~~~s~~~IA~~aGvs~~tlY~hF~~K~ 74 (241)
T 2hxi_A 23 MAGRRRWSTEQ---ILDAAAELLLA-GDAETFSVRKLAASLGTDSSSLYRHFRNKT 74 (241)
T ss_dssp -----CCCHHH---HHHHHHHHHSS-SSCCCCCHHHHHHHTTSCHHHHHHHTSSHH
T ss_pred CCcchhhHHHH---HHHHHHHHHHh-cCcccCCHHHHHHHhCcCHHHHHHHcCCHH
Confidence 33445566544 44444444111 123456889999999999999998888754
No 323
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=26.05 E-value=17 Score=31.12 Aligned_cols=52 Identities=10% Similarity=0.126 Sum_probs=41.9
Q ss_pred CCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHh-----CCCCceeeeecccccccCCCC
Q 016972 238 TKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV-----GVDRTVLKVWMHNNKSTFAKR 295 (379)
Q Consensus 238 TkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~ei-----Gv~r~V~KVWfhNnK~k~~k~ 295 (379)
..+|+.+++.|.-+++..| ..-..+++++++ +++.+++++.+.|=|.|+...
T Consensus 152 ~~LT~rE~~vL~~l~~~~~------~~~s~~eIa~~lw~~~~~~s~~tV~~hi~~lr~KL~~~ 208 (238)
T 2gwr_A 152 ISLTPLEFDLLVALARKPR------QVFTRDVLLEQVWGYRHPADTRLVNVHVQRLRAKVEKD 208 (238)
T ss_dssp ECCCHHHHHHHHHHHHSTT------CCBCHHHHHHHHTCCC--CCTHHHHHHHHHHHHHHCSS
T ss_pred cccCHHHHHHHHHHHHCCC------ceecHHHHHHHHcCCCCCCCcccHHHHHHHHHHHhccC
Confidence 4699999999999998754 122567899999 999999999999999888643
No 324
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=25.99 E-value=21 Score=28.80 Aligned_cols=44 Identities=9% Similarity=0.099 Sum_probs=32.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccc
Q 016972 236 FRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHN 287 (379)
Q Consensus 236 ~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhN 287 (379)
-+.+|+.++|-++...... ....+.+.|+..||++..|.-|..-
T Consensus 29 ~~rrWs~~~Kl~VV~~~~~--------g~~s~~e~arry~Is~s~i~~W~r~ 72 (95)
T 2jrt_A 29 DTRRWVASRKAAVVKAVIH--------GLITEREALDRYSLSEEEFALWRSA 72 (95)
T ss_dssp SCCCCCHHHHHHHHHHHHT--------TSSCHHHHHHHTTCCHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHc--------CCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 3445999977665554333 2346789999999999999999754
No 325
>4fqn_A Malcavernin; helical domain, harmonin-homology domain, protein-protein interaction, HOMO-dimer, protein binding; 1.90A {Homo sapiens}
Probab=25.65 E-value=69 Score=26.69 Aligned_cols=33 Identities=24% Similarity=0.536 Sum_probs=22.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHh
Q 016972 236 FRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV 274 (379)
Q Consensus 236 ~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~ei 274 (379)
.|++||.+.+++..+.-.+ ||.. .-|++||+++
T Consensus 25 L~~~L~~~ElqqFA~Llr~--YR~G----~~I~~Fc~kL 57 (98)
T 4fqn_A 25 LRTKLSSQEIQQFAALLHE--YRNG----ASIHEFCINL 57 (98)
T ss_dssp HTTTSCHHHHHHHHHHHHH--HHTT----CCHHHHHHHH
T ss_pred HHhhcChHHHHHHHHHHHH--HHcC----CCHHHHHHHH
Confidence 5789999888776555444 5554 3478888875
No 326
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=25.64 E-value=14 Score=29.98 Aligned_cols=27 Identities=11% Similarity=0.249 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 263 DDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 263 d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
+...++++|++.||++..|-..|.|..
T Consensus 26 ~~~s~~~IA~~aGvs~~tlY~~F~sKe 52 (178)
T 4hku_A 26 EKTTLYDIASNLNVTHAALYKHYRNKE 52 (178)
T ss_dssp GGCCHHHHHHHTTSCGGGGGGTCSSHH
T ss_pred ccccHHHHHHHhCcCHhHHHHHCCCHH
Confidence 456889999999999999999888754
No 327
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=25.61 E-value=1.4 Score=36.44 Aligned_cols=46 Identities=13% Similarity=0.226 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHH-HHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCC
Q 016972 239 KFSQSQKEKMFE-FAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAK 294 (379)
Q Consensus 239 kFT~EQkekM~~-faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k 294 (379)
++++.|++.+.- |++.. ..+++|..+||++.+++.|++.-|.++++
T Consensus 135 ~L~~~~r~vl~l~~~~g~----------s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 135 RLPEAQRALIERAFFGDL----------THRELAAETGLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp TSCHHHHHHHHHHHHSCC----------SSCCSTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcCC----------CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 367888888765 34432 12478999999999999999988887754
No 328
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=25.27 E-value=25 Score=26.69 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=14.3
Q ss_pred HHHHHHhCCCCceeeeeccc
Q 016972 268 HEFCNEVGVDRTVLKVWMHN 287 (379)
Q Consensus 268 q~fc~eiGv~r~V~KVWfhN 287 (379)
++||..+||++.+|.-|..+
T Consensus 18 ~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 18 SELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp HHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHCcCHHHHHHHHcC
Confidence 56777777777777777765
No 329
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=25.15 E-value=47 Score=25.19 Aligned_cols=25 Identities=16% Similarity=0.376 Sum_probs=19.6
Q ss_pred HHHHHHHHhCCCCceeeeecccccc
Q 016972 266 LVHEFCNEVGVDRTVLKVWMHNNKS 290 (379)
Q Consensus 266 ~vq~fc~eiGv~r~V~KVWfhNnK~ 290 (379)
+.+.||++.||+...++.+|...|-
T Consensus 34 l~~~y~~~~gi~~~~~rf~fdG~~l 58 (79)
T 3a4r_A 34 LMSHYEEAMGLSGHKLSFFFDGTKL 58 (79)
T ss_dssp HHHHHHHHHTCTTCCCEEEETTEEC
T ss_pred HHHHHHHHhCCCcccEEEEECCEEc
Confidence 3456677778889999999988775
No 330
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=25.14 E-value=20 Score=30.61 Aligned_cols=46 Identities=13% Similarity=0.281 Sum_probs=30.6
Q ss_pred CCCCHHH-HHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccc
Q 016972 238 TKFSQSQ-KEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKS 290 (379)
Q Consensus 238 TkFT~EQ-kekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~ 290 (379)
...|.++ ++.-.+.|.+.| ...++++|+++||++..|-..|.|...
T Consensus 9 ~~~~r~~Il~aA~~l~~~~G-------~~s~~~IA~~aGvs~~tlY~hF~~K~~ 55 (213)
T 2g7g_A 9 ARLDRERIAEAALELVDRDG-------DFRMPDLARHLNVQVSSIYHHAKGRAA 55 (213)
T ss_dssp --CCHHHHHHHHHHHHHHHS-------SCCHHHHHHHTTSCHHHHHTTSCHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcC-------CCCHHHHHHHhCCCHhHHHHHcCCHHH
Confidence 3455444 233344455545 557899999999999999988877543
No 331
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=25.10 E-value=16 Score=30.62 Aligned_cols=52 Identities=12% Similarity=0.139 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhC---CCCceeeeecccccccCCCC
Q 016972 238 TKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVG---VDRTVLKVWMHNNKSTFAKR 295 (379)
Q Consensus 238 TkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiG---v~r~V~KVWfhNnK~k~~k~ 295 (379)
-.+|+.+++.|.-+++..| ..-..++++++++ ++.++|++...|=|.|+...
T Consensus 144 ~~Lt~rE~~vl~~l~~~~~------~~~s~~~Ia~~l~~~~~s~~tv~~~i~~l~~Kl~~~ 198 (220)
T 1p2f_A 144 IHLPKKEFEILLFLAENAG------KVVTREKLLETFWEDPVSPRVVDTVIKRIRKAIEDD 198 (220)
T ss_dssp CCCCHHHHHHHHHHHHTTT------SCEEHHHHHHHHCSSCCCTHHHHHHHHHHHHHHCSS
T ss_pred EecCHHHHHHHHHHHHCCC------ceEcHHHHHHHHhCCCCCcchHHHHHHHHHHHHhcc
Confidence 4699999999998988754 1235689999999 99999999999999888643
No 332
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=24.91 E-value=87 Score=25.28 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 240 FSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 240 FT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
.|.|||++|-+. +.+.|+..+|++...+-|-|....
T Consensus 76 rt~eqK~~l~~~--------------l~~~l~~~lg~~~~~v~I~i~e~~ 111 (131)
T 2aal_A 76 RSEEQKVCFYKL--------------LTGALERDCGISPDDVIVALVENS 111 (131)
T ss_dssp CCHHHHHHHHHH--------------HHHHHHHHHCCCGGGEEEEEEECC
T ss_pred CCHHHHHHHHHH--------------HHHHHHHHhCcCcccEEEEEEEcC
Confidence 489999887654 446788999999999999888664
No 333
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=24.91 E-value=65 Score=27.26 Aligned_cols=36 Identities=22% Similarity=0.528 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhCccC----CCCCHHHHHHHHHHhCCC
Q 016972 242 QSQKEKMFEFAERVGWKM----QKRDDDLVHEFCNEVGVD 277 (379)
Q Consensus 242 ~EQkekM~~faEk~GWRI----qk~d~~~vq~fc~eiGv~ 277 (379)
..-+..|+++.-++||++ |-+|+.++++|-+.|--.
T Consensus 61 kqllkemlelisklgykvflllqdqdeneleefkrkiesq 100 (134)
T 2lci_A 61 KQLLKEMLELISKLGYKVFLLLQDQDENELEEFKRKIESQ 100 (134)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEECSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCceeEEEeecCchhHHHHHHHHHHhC
Confidence 345677999999999985 889999999999988543
No 334
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=24.90 E-value=21 Score=29.39 Aligned_cols=47 Identities=19% Similarity=0.267 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccc
Q 016972 243 SQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKS 290 (379)
Q Consensus 243 EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~ 290 (379)
+-++++++.|.++=|+-.+ +...++++|++.||++.+|-.+|.|...
T Consensus 11 ~~r~~Il~aA~~lf~~~G~-~~~s~~~IA~~aGvskgtlY~~F~sKe~ 57 (210)
T 2xdn_A 11 ETRAQIIEAAERAFYKRGV-ARTTLADIAELAGVTRGAIYWHFNNKAE 57 (210)
T ss_dssp HHHHHHHHHHHHHHHHHCS-TTCCHHHHHHHHTCCTTHHHHHCSSHHH
T ss_pred HHHHHHHHHHHHHHHHcCc-ccCcHHHHHHHHCCChHHHHHHhCCHHH
Confidence 3355566555444222223 4568899999999999999999987543
No 335
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=24.71 E-value=25 Score=27.00 Aligned_cols=59 Identities=10% Similarity=0.236 Sum_probs=41.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCC
Q 016972 233 RKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFA 293 (379)
Q Consensus 233 kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~ 293 (379)
.|+.|-..|+|.-+++.+..+++| +.+.--..+-++-+.-||++..|+-=+|.-|..++
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG--~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~ 61 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLG--VERAVPKKILDLMNVDKLTRENVASHLQKFRVALK 61 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHC--TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhC--CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 467788899999999999999999 44444455555555556777777766665554443
No 336
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=24.65 E-value=38 Score=24.84 Aligned_cols=31 Identities=26% Similarity=0.597 Sum_probs=21.0
Q ss_pred ccCccccccCCCCCCCCCCccccccc--cccccccccC
Q 016972 90 LDGCGEFMPSPTATPSDPTSLKCAAC--GCHRNFHRRE 125 (379)
Q Consensus 90 vDGCGEFMPSGeegt~dp~ALKCAAC--GCHRNFHRKE 125 (379)
=|=|++||-.- --..|+|..| .||+--+.+.
T Consensus 26 C~~C~~~l~Gl-----~~qg~~C~~C~~~~Hk~C~~~v 58 (65)
T 2enz_A 26 CEHCGTLLWGL-----ARQGLKCDACGMNVHHRCQTKV 58 (65)
T ss_dssp CSSSCCBCCCS-----SSCSEEESSSCCEECTTTTTTS
T ss_pred chhcChhheec-----CCcccccCCCCCccCHhHHhhC
Confidence 46799999642 1247999998 4666655553
No 337
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=24.51 E-value=10 Score=31.63 Aligned_cols=47 Identities=17% Similarity=0.212 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccc
Q 016972 243 SQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKS 290 (379)
Q Consensus 243 EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~ 290 (379)
+-++++++.|.++=|+- .-+...++++|++.||++.+|-.+|-|...
T Consensus 22 ~~r~~Il~AA~~lf~e~-G~~~~s~~~IA~~AGVsk~tlY~~F~sKe~ 68 (207)
T 3bjb_A 22 ARHVRMLEAAIELATEK-ELARVQMHEVAKRAGVAIGTLYRYFPSKTH 68 (207)
T ss_dssp HHHHHHHHHHHHHHHHS-CGGGCCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHHHHHHHc-CcccCCHHHHHHHhCCCHHHHHHHCCCHHH
Confidence 44566666555542221 234468999999999999999999987543
No 338
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=24.49 E-value=1.4e+02 Score=22.48 Aligned_cols=39 Identities=15% Similarity=0.149 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHHHhCc-cCCCCCHHHHHHHHHHhCCC
Q 016972 239 KFSQSQKEKMFEFAERVGW-KMQKRDDDLVHEFCNEVGVD 277 (379)
Q Consensus 239 kFT~EQkekM~~faEk~GW-RIqk~d~~~vq~fc~eiGv~ 277 (379)
.||++|++++++.|...-- +-.+-+...+..+...+|+.
T Consensus 1 ~l~~~~~~~l~~~F~~~D~~~~G~i~~~el~~~l~~~~~~ 40 (149)
T 2mys_C 1 EFSKAAADDFKEAFLLFDRTGDAKITASQVGDIARALGQN 40 (149)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCC
Confidence 3788888888887766421 11234455666666666654
No 339
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=24.48 E-value=23 Score=26.88 Aligned_cols=20 Identities=10% Similarity=0.273 Sum_probs=10.9
Q ss_pred HHHHHHhCCCCce----eeeeccc
Q 016972 268 HEFCNEVGVDRTV----LKVWMHN 287 (379)
Q Consensus 268 q~fc~eiGv~r~V----~KVWfhN 287 (379)
++||..+||++.+ |.-|..+
T Consensus 18 ~~lA~~~gis~~~~~~~is~~E~g 41 (98)
T 3lfp_A 18 EKLGVLAGIDEASASARMNQYEKG 41 (98)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCcchhhhHHHHHHCC
Confidence 4555555555555 5555544
No 340
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=24.36 E-value=27 Score=27.23 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=9.6
Q ss_pred HHHHHHhCCCCceeeeeccc
Q 016972 268 HEFCNEVGVDRTVLKVWMHN 287 (379)
Q Consensus 268 q~fc~eiGv~r~V~KVWfhN 287 (379)
++||..+||++..|.-|-.+
T Consensus 45 ~elA~~~gis~~~is~iE~G 64 (99)
T 3g5g_A 45 EDLAYKSNLDRTYISGIERN 64 (99)
T ss_dssp HHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHCcCHHHHHHHHCC
Confidence 34455555555555444443
No 341
>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A*
Probab=24.28 E-value=36 Score=30.45 Aligned_cols=37 Identities=8% Similarity=0.080 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhC
Q 016972 238 TKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVG 275 (379)
Q Consensus 238 TkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiG 275 (379)
..|+.|++++|+++++.+ ||....-++.+++|-+++.
T Consensus 200 ~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~ 236 (259)
T 3hsq_A 200 AGFSPEVRNAIKHAYKVI-YHSGISTRKALDELEASGN 236 (259)
T ss_dssp TTCCHHHHHHHHHHHHHH-HSSSSCHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHcC
Confidence 469999999999999888 6666555666666655543
No 342
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=24.26 E-value=49 Score=26.71 Aligned_cols=35 Identities=9% Similarity=0.148 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 241 SQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 241 T~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
|.|||++|-+. +-+.|.+.+||+...+-|.|....
T Consensus 69 t~eqk~~l~~~--------------i~~~l~~~lgi~~~~v~I~~~e~~ 103 (125)
T 2wkb_A 69 NRSNNSLLADK--------------ITKILSNHLSVKPRRVYIEFRDCS 103 (125)
T ss_dssp --CTHHHHHHH--------------HHHHHHHHHCCCGGGEEEEEEC--
T ss_pred CHHHHHHHHHH--------------HHHHHHHHhCcCcceEEEEEEECC
Confidence 67999876553 335688999999999999888765
No 343
>3npi_A TETR family regulatory protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.96A {Corynebacterium diphtheriae}
Probab=24.22 E-value=12 Score=32.13 Aligned_cols=28 Identities=7% Similarity=0.336 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHhCCCCceeeeecccccc
Q 016972 263 DDDLVHEFCNEVGVDRTVLKVWMHNNKS 290 (379)
Q Consensus 263 d~~~vq~fc~eiGv~r~V~KVWfhNnK~ 290 (379)
+...++++|++.||++..|-..|.|...
T Consensus 37 ~~~t~~~IA~~aGvs~~tlY~~F~sKe~ 64 (251)
T 3npi_A 37 SDAKLEAIAKKSGMSKRMIHYHFGDKRG 64 (251)
T ss_dssp HHCCHHHHHHHHCCCHHHHHHHHCSHHH
T ss_pred cccCHHHHHHHHCCCHHHHHHHcCCHHH
Confidence 3457899999999999999998887543
No 344
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.19 E-value=37 Score=25.61 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=14.6
Q ss_pred CccccccCCCCCCCCCCccccccccc
Q 016972 92 GCGEFMPSPTATPSDPTSLKCAACGC 117 (379)
Q Consensus 92 GCGEFMPSGeegt~dp~ALKCAACGC 117 (379)
.|--+|-.-+ .+++||.||+-
T Consensus 33 eC~~C~V~N~-----a~~~kC~ACet 53 (57)
T 2ebv_A 33 ECSVCCVSNN-----AEDNKCVSCMS 53 (57)
T ss_dssp CCSSSCCCCC-----SSCSBCSSSCC
T ss_pred eCCeeEccCc-----cCCceeeEcCC
Confidence 3666666643 45899999974
No 345
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=24.10 E-value=13 Score=27.10 Aligned_cols=24 Identities=17% Similarity=0.472 Sum_probs=21.1
Q ss_pred HHHHHHHHhCCCCceeeeeccccc
Q 016972 266 LVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 266 ~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
..++||+.+||++..|.-|..+.+
T Consensus 13 sq~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 13 SVSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHHTC
T ss_pred CHHHHHHHHCCCHHHHHHHHHCCC
Confidence 357999999999999999998765
No 346
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=23.97 E-value=25 Score=26.88 Aligned_cols=20 Identities=20% Similarity=0.424 Sum_probs=11.8
Q ss_pred HHHHHHhCCCCceeeeeccc
Q 016972 268 HEFCNEVGVDRTVLKVWMHN 287 (379)
Q Consensus 268 q~fc~eiGv~r~V~KVWfhN 287 (379)
++||..+||++.+|.-|-.+
T Consensus 47 ~elA~~lgvs~~~is~~E~G 66 (99)
T 2ppx_A 47 EEFSARYHIPLGTLRDWEQG 66 (99)
T ss_dssp HHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHhCcCHHHHHHHHcC
Confidence 45666666666666666544
No 347
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=23.86 E-value=13 Score=30.92 Aligned_cols=29 Identities=10% Similarity=0.096 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHhCCCCceeeeecccccc
Q 016972 262 RDDDLVHEFCNEVGVDRTVLKVWMHNNKS 290 (379)
Q Consensus 262 ~d~~~vq~fc~eiGv~r~V~KVWfhNnK~ 290 (379)
-+...++++|++.||++..|-..|.|...
T Consensus 29 ~~~~s~~~IA~~aGvskgtlY~~F~sKe~ 57 (219)
T 2w53_A 29 VARTTLEMIGARAGYTRGAVYWHFKNKSE 57 (219)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHTTCSSHHH
T ss_pred cccCCHHHHHHHhCCCchHHhhcCCCHHH
Confidence 34568899999999999999999987543
No 348
>3bd9_A Heparan sulfate glucosamine 3-O-sulfotransferase 5; heparan sulfate biosynthesis, substrate specificity, glycoprotein, golgi apparatus, membrane; HET: A3P; 2.30A {Homo sapiens}
Probab=23.79 E-value=1e+02 Score=27.56 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=27.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCC
Q 016972 233 RKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDR 278 (379)
Q Consensus 233 kKR~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r 278 (379)
+.|.+-.+++|++++|.+|++. .+++|.+.+|.+-
T Consensus 243 k~~~~~~l~~~~~~~L~~~f~p-----------~~~~L~~llg~~~ 277 (280)
T 3bd9_A 243 KGRIHPEVDPSVITKLRKFFHP-----------FNQKFYQITGRTL 277 (280)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH-----------HHHHHHHHHSCCC
T ss_pred cCCCCCCCCHHHHHHHHHHHHH-----------HHHHHHHHHCCCC
Confidence 3466789999999999998876 5688999998653
No 349
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 2.19A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=23.68 E-value=12 Score=31.04 Aligned_cols=47 Identities=9% Similarity=0.169 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 242 QSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 242 ~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
.+-++++++.|.++=|+-.+ +...++++|++.||++..|-..|.|..
T Consensus 11 ~~~r~~Il~aA~~lf~~~G~-~~~s~~~IA~~aGvsk~tlY~hF~sKe 57 (200)
T 2hyj_A 11 QATRGRILGRAAEIASEEGL-DGITIGRLAEELEMSKSGVHKHFGTKE 57 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHCG-GGCCHHHHHHHHTCCHHHHHTTCSSHH
T ss_pred hccHHHHHHHHHHHHHHcCc-ccCCHHHHHHHhCCChHHHHHHcCCHH
Confidence 44566666655554222223 456889999999999999999997643
No 350
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=23.62 E-value=41 Score=29.16 Aligned_cols=15 Identities=13% Similarity=0.189 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHH
Q 016972 240 FSQSQKEKMFEFAER 254 (379)
Q Consensus 240 FT~EQkekM~~faEk 254 (379)
+|+|||+++.+.+++
T Consensus 119 LTPEQk~ql~e~~~~ 133 (145)
T 3itf_A 119 LTPEQQAVLNEKHQQ 133 (145)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
No 351
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=23.57 E-value=10 Score=31.18 Aligned_cols=28 Identities=7% Similarity=0.092 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 262 RDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 262 ~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
-+...++++|++.||++.+|-..|.|..
T Consensus 21 ~~~~s~~~IA~~Agvs~~t~Y~~F~sK~ 48 (212)
T 3rh2_A 21 ERTITTNHIAAHLDISPGNLYYHFRNKE 48 (212)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred cccCCHHHHHHHhCCCHHHHHHHCCCHH
Confidence 3456889999999999999999888754
No 352
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=23.41 E-value=9.5 Score=31.76 Aligned_cols=28 Identities=14% Similarity=0.356 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 262 RDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 262 ~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
-+...++++|++.||++.+|-..|.|..
T Consensus 26 y~~~s~~~IA~~AGvs~gt~Y~yF~sKe 53 (206)
T 1vi0_A 26 YHQSQVSKIAKQAGVADGTIYLYFKNKE 53 (206)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred cccCCHHHHHHHhCCChhHHHHHcCCHH
Confidence 3456889999999999999999998754
No 353
>2cho_A Glucosaminidase, hexosaminiase; O-GLCNACASE, hydrolase, N-acetylglucosamine; 1.85A {Bacteroides thetaiotaomicron} SCOP: a.246.1.1 c.1.8.10 d.92.2.3 PDB: 2chn_A 2vvn_A* 2vvs_A* 2x0h_A* 2xm2_A* 2w4x_A* 2w66_A* 2w67_A* 2wca_A* 2xj7_A* 2xm1_A* 2j47_A* 2jiw_A* 2wzh_A* 2wzi_A* 2j4g_A*
Probab=22.97 E-value=83 Score=33.56 Aligned_cols=43 Identities=19% Similarity=0.325 Sum_probs=32.6
Q ss_pred CCCCCCCHHHHHHHHHHHHH------------------hCccCCCC-----CHHHHHHHHHHhCCC
Q 016972 235 RFRTKFSQSQKEKMFEFAER------------------VGWKMQKR-----DDDLVHEFCNEVGVD 277 (379)
Q Consensus 235 R~RTkFT~EQkekM~~faEk------------------~GWRIqk~-----d~~~vq~fc~eiGv~ 277 (379)
..|.-||.|++.++.++... .|||+.|| +..++.++|++-||.
T Consensus 136 ~~r~~~s~~~ik~~id~ma~~KlN~~h~hl~Ddp~~~~~~wr~~yP~lt~~ei~elv~yA~~rgI~ 201 (716)
T 2cho_A 136 FYGTPWSHQARLSQLKFYGKNKMNTYIYGPKDDPYHSAPNWRLPYPDKEAAQLQELVAVANENEVD 201 (716)
T ss_dssp CSSSCCCHHHHHHHHHHHHHTTCCEEEECCTTCTTTSTTGGGSCCCHHHHHHHHHHHHHHHHTTCE
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCcEEEEeeccCcccccccccccCChhhHHHHHHHHHHHHHcCCE
Confidence 45666788888888876554 48999888 567777888888875
No 354
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.97 E-value=2.1e+02 Score=20.63 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=22.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhC
Q 016972 231 GGRKRFRTKFSQSQKEKMFEFAERVG 256 (379)
Q Consensus 231 ~~kKR~RTkFT~EQkekM~~faEk~G 256 (379)
.+.+.....+|+|+.+++++.+.+.|
T Consensus 6 ~~~r~~~~~WT~eE~~~F~~~~~~~g 31 (61)
T 2eqr_A 6 SGDRQFMNVWTDHEKEIFKDKFIQHP 31 (61)
T ss_dssp CCCCSCCCSCCHHHHHHHHHHHHHST
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhC
Confidence 34567889999999999999999876
No 355
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=22.94 E-value=10 Score=30.50 Aligned_cols=52 Identities=8% Similarity=-0.013 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCC
Q 016972 239 KFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKSTFAKR 295 (379)
Q Consensus 239 kFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~k~~k~ 295 (379)
.+++.|++.+.-.+--.+ ...-..+++|..+||++.+++.+++.-..++++.
T Consensus 19 ~Lp~reR~Vi~Lry~l~~-----~e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~ 70 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDM-----NTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHP 70 (99)
T ss_pred cCCHHHHHHHHHHHhcCC-----CCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 467778887766542111 1223668999999999999999998888777654
No 356
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=22.93 E-value=83 Score=28.26 Aligned_cols=42 Identities=14% Similarity=0.313 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHH-HHHHhCccCCCCCH-HHHHHHHHHhCCCCce
Q 016972 239 KFSQSQKEKMFE-FAERVGWKMQKRDD-DLVHEFCNEVGVDRTV 280 (379)
Q Consensus 239 kFT~EQkekM~~-faEk~GWRIqk~d~-~~vq~fc~eiGv~r~V 280 (379)
.||.+|..+|+. ..+.++|++..+.. .-++.|++.++++...
T Consensus 126 ~~~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~ 169 (254)
T 2f2c_A 126 CFTNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIPEDL 169 (254)
T ss_dssp -CCHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTTCCGGG
T ss_pred CCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhh
Confidence 589999999998 78999999988765 5788999999987654
No 357
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=22.87 E-value=31 Score=27.49 Aligned_cols=46 Identities=9% Similarity=0.099 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 243 SQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 243 EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
+-++++.+.|.++=|+-.+. ...++++|++.||++..|-..|.|..
T Consensus 7 ~~r~~Il~aA~~l~~~~G~~-~~s~~~IA~~agvs~~tly~~F~sK~ 52 (180)
T 2fd5_A 7 QTRARILGAATQALLERGAV-EPSVGEVMGAAGLTVGGFYAHFQSKD 52 (180)
T ss_dssp HHHHHHHHHHHHHHHHHTTT-SCCHHHHHHHTTCCGGGGGGTCSCHH
T ss_pred cCHHHHHHHHHHHHHHhCcc-cCCHHHHHHHhCCCccHHHHHCCCHH
Confidence 34455555444432222243 45889999999999999999998754
No 358
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=22.76 E-value=14 Score=29.82 Aligned_cols=28 Identities=11% Similarity=0.327 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHhCCCCceeeeecccccc
Q 016972 263 DDDLVHEFCNEVGVDRTVLKVWMHNNKS 290 (379)
Q Consensus 263 d~~~vq~fc~eiGv~r~V~KVWfhNnK~ 290 (379)
+...++++|++.||++.+|=.+|.|...
T Consensus 22 ~~~s~~~IA~~agvsk~t~Y~~F~sK~~ 49 (190)
T 3vpr_A 22 EATSVQDLAQALGLSKAALYHHFGSKEE 49 (190)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHSSHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 3457899999999999999999987654
No 359
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=22.73 E-value=29 Score=27.03 Aligned_cols=21 Identities=14% Similarity=0.117 Sum_probs=11.2
Q ss_pred HHHHHHhCCCCceeeeecccc
Q 016972 268 HEFCNEVGVDRTVLKVWMHNN 288 (379)
Q Consensus 268 q~fc~eiGv~r~V~KVWfhNn 288 (379)
++||..+||++..|.-|..+.
T Consensus 45 ~~lA~~~gis~~~is~~E~g~ 65 (117)
T 3f52_A 45 RELAEASRVSPGYLSELERGR 65 (117)
T ss_dssp HHHHHHTTSCHHHHHHHHTTS
T ss_pred HHHHHHHCcCHHHHHHHHCCC
Confidence 355555555555555555443
No 360
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=22.67 E-value=81 Score=22.68 Aligned_cols=36 Identities=17% Similarity=0.351 Sum_probs=25.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCC
Q 016972 236 FRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDR 278 (379)
Q Consensus 236 ~RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r 278 (379)
+|.+||+|+-++|+++.++.| ..+ =.++|+.|+..|
T Consensus 8 ~~~~WT~eED~~L~~~v~~~G----~~~---W~~IA~~~~~~R 43 (58)
T 2elk_A 8 FDENWGADEELLLIDACETLG----LGN---WADIADYVGNAR 43 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHTT----TTC---HHHHHHHHCSSC
T ss_pred CCCCCCHHHHHHHHHHHHHHC----cCC---HHHHHHHHCCCC
Confidence 356799999999999999987 222 245566666444
No 361
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=22.67 E-value=53 Score=26.61 Aligned_cols=23 Identities=13% Similarity=0.329 Sum_probs=17.8
Q ss_pred HHHHHHhCCCCceeeeecccccc
Q 016972 268 HEFCNEVGVDRTVLKVWMHNNKS 290 (379)
Q Consensus 268 q~fc~eiGv~r~V~KVWfhNnK~ 290 (379)
+.||++.||....|+.+|-..|-
T Consensus 54 ~aY~~~~g~~~~~vrF~FDG~rI 76 (97)
T 2jxx_A 54 SHYEEAMGLSGRKLSFFFDGTKL 76 (97)
T ss_dssp HHHHHHTTCSSSCCEEEETTEEC
T ss_pred HHHHHHHCCCcccEEEEECCEEc
Confidence 44566667888899999988875
No 362
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=22.66 E-value=22 Score=29.24 Aligned_cols=48 Identities=6% Similarity=0.005 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccc
Q 016972 242 QSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKS 290 (379)
Q Consensus 242 ~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~ 290 (379)
.+-++++++.|.++=|+-.+ +...++++|++.||++..|-.+|.|...
T Consensus 8 ~~~r~~Il~aA~~lf~~~G~-~~~s~~~IA~~aGvsk~tlY~~F~sKe~ 55 (203)
T 3cdl_A 8 DQKRESIVQAAIAEFGDRGF-EITSMDRIAARAEVSKRTVYNHFPSKEE 55 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHCT-TTCCHHHHHHHTTSCHHHHHTTSSSHHH
T ss_pred hhHHHHHHHHHHHHHHHcCc-hhcCHHHHHHHhCCCHHHHHHHCCCHHH
Confidence 44456666655444222223 4558899999999999999999987543
No 363
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=22.65 E-value=8.7 Score=31.72 Aligned_cols=26 Identities=4% Similarity=0.198 Sum_probs=23.0
Q ss_pred HHHHHHHHHhCCCCceeeeecccccc
Q 016972 265 DLVHEFCNEVGVDRTVLKVWMHNNKS 290 (379)
Q Consensus 265 ~~vq~fc~eiGv~r~V~KVWfhNnK~ 290 (379)
..++++|++.||++.+|-.+|.|...
T Consensus 32 ~s~~~IA~~agvs~~tiY~~F~sK~~ 57 (224)
T 1t33_A 32 ATTRDIAALAGQNIAAITYYFGSKED 57 (224)
T ss_dssp SCHHHHHHHHTSCHHHHHHHHSSHHH
T ss_pred ccHHHHHHHhCCCHHHHHHhcCCHHH
Confidence 78999999999999999999987543
No 364
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=22.63 E-value=97 Score=23.04 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=20.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC
Q 016972 234 KRFRTKFSQSQKEKMFEFAERVG 256 (379)
Q Consensus 234 KR~RTkFT~EQkekM~~faEk~G 256 (379)
...|..||+|+-++|+++.++.|
T Consensus 6 ~~~~~~WT~eEd~~l~~~~~~~G 28 (72)
T 2cu7_A 6 SGYSVKWTIEEKELFEQGLAKFG 28 (72)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHTC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHC
Confidence 45677999999999999999988
No 365
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=22.54 E-value=48 Score=28.25 Aligned_cols=27 Identities=22% Similarity=0.474 Sum_probs=18.6
Q ss_pred CCCCCC-----CCCHHHHHHHHHHHHHhCccC
Q 016972 233 RKRFRT-----KFSQSQKEKMFEFAERVGWKM 259 (379)
Q Consensus 233 kKR~RT-----kFT~EQkekM~~faEk~GWRI 259 (379)
+|||.| -+|.||+.+=.++.-+.||++
T Consensus 7 ~kkfeTfSyLP~Lt~eqI~kQV~yll~qGw~~ 38 (118)
T 3zxw_B 7 ERRYETFSYLPPLSDAQIARQIQYAIDQGYHP 38 (118)
T ss_dssp -------CCSCCCCHHHHHHHHHHHHHHTCEE
T ss_pred CccccccccCCCCCHHHHHHHHHHHHhCCCee
Confidence 578887 478999999999999999975
No 366
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=22.53 E-value=22 Score=28.38 Aligned_cols=40 Identities=10% Similarity=0.008 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 245 KEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 245 kekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
++...+.+.+.| + +...++++|++.||++.+|-..|.|.-
T Consensus 8 l~aa~~l~~~~G----~-~~~ti~~Ia~~agvs~~t~Y~~F~sK~ 47 (194)
T 3bqz_B 8 LGVAKELFIKNG----Y-NATTTGEIVKLSESSKGNLYYHFKTKE 47 (194)
T ss_dssp HHHHHHHHHHHT----T-TTCCHHHHHHHTTCCHHHHHHHTSSHH
T ss_pred HHHHHHHHHHcC----C-ccCCHHHHHHHhCCCchhHHHhCCCHH
Confidence 334444555555 3 445789999999999999988887653
No 367
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=22.47 E-value=8.2 Score=30.97 Aligned_cols=48 Identities=13% Similarity=0.120 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccc
Q 016972 242 QSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKS 290 (379)
Q Consensus 242 ~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~ 290 (379)
.+-++++.+.|.++=++ ..-+...++++|++.||++.+|-.+|.+...
T Consensus 13 ~~~r~~Il~aa~~lf~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~ 60 (156)
T 3ljl_A 13 EITIQKIMDAVVDQLLR-LGYDKMSYTTLSQQTGVSRTGISHHFPKKTD 60 (156)
T ss_dssp HHHHHHHHHHHHHHHHH-THHHHCCHHHHHHHHTCCHHHHHHHCSSTHH
T ss_pred HhHHHHHHHHHHHHHHH-hChhhcCHHHHHHHHCCCHHHHHHHCCCHHH
Confidence 34455666555444111 1123457899999999999999999988543
No 368
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=22.43 E-value=39 Score=23.39 Aligned_cols=26 Identities=27% Similarity=0.792 Sum_probs=17.6
Q ss_pred ccCccccccCCCCCCCCCCcccccccc--cccccccc
Q 016972 90 LDGCGEFMPSPTATPSDPTSLKCAACG--CHRNFHRR 124 (379)
Q Consensus 90 vDGCGEFMPSGeegt~dp~ALKCAACG--CHRNFHRK 124 (379)
=|=|++||- ..|+|..|+ ||+--+.+
T Consensus 17 C~~C~~~l~---------qG~~C~~C~~~~H~~C~~~ 44 (52)
T 1faq_A 17 CDICQKFLL---------NGFRCQTCGYKFHEHCSTK 44 (52)
T ss_dssp CTTSSSEEC---------SEEECTTTTCCBCSTTSSS
T ss_pred CCCcccccc---------cCCEeCCCCCeEChhHHhh
Confidence 366999986 269999985 45444443
No 369
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 1.99A {Cytophaga hutchinsonii}
Probab=22.42 E-value=9.1 Score=30.79 Aligned_cols=47 Identities=6% Similarity=0.042 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 242 QSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 242 ~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
.+-++++.+.|.++=++ +.-+...++++|++.||++.+|-..|.|..
T Consensus 10 ~~~r~~Il~aA~~lf~~-~G~~~~ti~~IA~~agvs~~t~Y~~F~sK~ 56 (204)
T 3eup_A 10 DRTRQFIIESTAPVFNV-KGLAGTSLTDLTEATNLTKGSIYGNFENKE 56 (204)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHCCHHHHHHHHTCCHHHHTTTSSSHH
T ss_pred hHHHHHHHHHHHHHHHH-cCcccCCHHHHHHHhCCCcHHHHHhCCCHH
Confidence 45566666655554111 112345789999999999999998888754
No 370
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=22.39 E-value=1.4e+02 Score=22.99 Aligned_cols=52 Identities=10% Similarity=0.035 Sum_probs=34.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCc-c-CCCCCHHHHHHHHHHhCCC--Cceeeeec
Q 016972 234 KRFRTKFSQSQKEKMFEFAERVGW-K-MQKRDDDLVHEFCNEVGVD--RTVLKVWM 285 (379)
Q Consensus 234 KR~RTkFT~EQkekM~~faEk~GW-R-Iqk~d~~~vq~fc~eiGv~--r~V~KVWf 285 (379)
++.-+.||++|++++++.|...-- + -.+-+..++..+...+|+. ...++.+|
T Consensus 6 ~~~~~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~ 61 (161)
T 1dtl_A 6 KAAVEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMI 61 (161)
T ss_dssp TTGGGGSCHHHHHHHHHHHHHHTTTCGGGSBCHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHhhCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 455678999999999998877531 0 1245667777888887743 33444444
No 371
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=22.30 E-value=45 Score=30.31 Aligned_cols=45 Identities=13% Similarity=0.241 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhC---CCCceeeeeccccc
Q 016972 241 SQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVG---VDRTVLKVWMHNNK 289 (379)
Q Consensus 241 T~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiG---v~r~V~KVWfhNnK 289 (379)
+..++..+.-++-+.| +...++.+.||+.+| |++.++.-|++.-+
T Consensus 7 ~~~~~R~~i~~~~~~G----~s~~~~~~~l~~~~g~~~vs~~tv~~w~~r~~ 54 (345)
T 3hot_A 7 NKEQTRTVLIFCFHLK----KTAAESHRMLVEAFGEQVPTVKTCERWFQRFK 54 (345)
T ss_dssp CHHHHHHHHHHHHHTT----CCHHHHHHHHHHHTCSCSCCHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHcC----CCHHHHHHHHHHHhCCCCCcHHHHHHHHHHHh
Confidence 3444444444555566 666778899999999 99999999997643
No 372
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Probab=22.23 E-value=1.2e+02 Score=23.47 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=25.3
Q ss_pred CCCCHHHHHHHHHHHHHhC--ccCCCCCHHHHHHHHHHhCCC
Q 016972 238 TKFSQSQKEKMFEFAERVG--WKMQKRDDDLVHEFCNEVGVD 277 (379)
Q Consensus 238 TkFT~EQkekM~~faEk~G--WRIqk~d~~~vq~fc~eiGv~ 277 (379)
+.||++|+++|++.|...- =+-.+-+..++..+...+|+.
T Consensus 5 ~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~~ 46 (158)
T 2jnf_A 5 SKLSSNQVKLLETAFRDFETPEGSGRVSTDQIGIILEVLGIQ 46 (158)
T ss_dssp TTSCHHHHHHHHHHHHHSBCSSSCSSEEHHHHHHHHHHTTCS
T ss_pred hhCCHHHHHHHHHHHHHhCCCCCCCcCcHHHHHHHHHHhCCC
Confidence 4688899999888887642 112234456666666666643
No 373
>2dgz_A Werner syndrome protein variant; HRDC domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.60.8.1
Probab=22.22 E-value=1.3e+02 Score=24.74 Aligned_cols=36 Identities=14% Similarity=0.240 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCcee
Q 016972 238 TKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVL 281 (379)
Q Consensus 238 TkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~ 281 (379)
..+++.+.+.-.+.|++| .+.|+++|++.+|++++|
T Consensus 11 p~~~~~e~~~d~~l~~~L--------~~wR~~~A~~~~vP~y~I 46 (113)
T 2dgz_A 11 PVISAQEQETQIVLYGKL--------VEARQKHANKMDVPPAIL 46 (113)
T ss_dssp CCCCHHHHHHHHHHHHHH--------HHHHHHHHHHTTCCHHHH
T ss_pred CccCccccchHHHHHHHH--------HHHHHHHHHHhCCCCCee
Confidence 345666655556788887 578899999999998864
No 374
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=22.16 E-value=14 Score=29.68 Aligned_cols=26 Identities=15% Similarity=0.321 Sum_probs=22.8
Q ss_pred HHHHHHHHHhCCCCceeeeecccccc
Q 016972 265 DLVHEFCNEVGVDRTVLKVWMHNNKS 290 (379)
Q Consensus 265 ~~vq~fc~eiGv~r~V~KVWfhNnK~ 290 (379)
..++++|++.||++.+|-..|.|...
T Consensus 29 ~t~~~IA~~aGvs~~tly~~F~sK~~ 54 (190)
T 3jsj_A 29 IGVEALCKAAGVSKRSMYQLFESKDE 54 (190)
T ss_dssp CCHHHHHHHHTCCHHHHHHHCSCHHH
T ss_pred ccHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 78999999999999999998886543
No 375
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=22.07 E-value=1.1e+02 Score=23.05 Aligned_cols=38 Identities=21% Similarity=0.256 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHHHhCc-cCCCCCHHHHHHHHHHhCCC
Q 016972 240 FSQSQKEKMFEFAERVGW-KMQKRDDDLVHEFCNEVGVD 277 (379)
Q Consensus 240 FT~EQkekM~~faEk~GW-RIqk~d~~~vq~fc~eiGv~ 277 (379)
||++|+++|++.|...-= +-.+-+..++..+.+.+|+.
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~ 39 (143)
T 3j04_B 1 FDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKN 39 (143)
T ss_dssp CCHHHHHHHHHHHTTTCSSCTTCCCHHHHHHHHHHTSCC
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCC
Confidence 789999999998876420 01245667778888888764
No 376
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=22.06 E-value=59 Score=25.51 Aligned_cols=25 Identities=8% Similarity=0.392 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCCceeeeeccccccc
Q 016972 267 VHEFCNEVGVDRTVLKVWMHNNKST 291 (379)
Q Consensus 267 vq~fc~eiGv~r~V~KVWfhNnK~k 291 (379)
.+.||.+.||....++.+|...|-.
T Consensus 44 ~~~y~~~~gi~~~~~rf~fdG~~l~ 68 (93)
T 2d07_B 44 MKAYCERQGLSMRQIRFRFDGQPIN 68 (93)
T ss_dssp HHHHHHHHTCCGGGEEEEETTEECC
T ss_pred HHHHHHHhCCCccceEEEECCEEcC
Confidence 3456777889999999999988754
No 377
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=21.94 E-value=77 Score=24.72 Aligned_cols=41 Identities=12% Similarity=0.184 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHHHHHh---CccCCCCCHHHHHHHHHHhCCCC
Q 016972 238 TKFSQSQKEKMFEFAERV---GWKMQKRDDDLVHEFCNEVGVDR 278 (379)
Q Consensus 238 TkFT~EQkekM~~faEk~---GWRIqk~d~~~vq~fc~eiGv~r 278 (379)
+.||++|+++|++.|... -=+-.+-+..++..+.+.+|+..
T Consensus 1 s~ls~~~~~~l~~~F~~~D~~~d~~G~i~~~el~~~l~~lg~~~ 44 (159)
T 2ovk_C 1 SQLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNP 44 (159)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTSSSEEEGGGHHHHHHHTTCCC
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHcCCCC
Confidence 469999999999988775 10122344567777888887643
No 378
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=21.90 E-value=1.5e+02 Score=27.25 Aligned_cols=41 Identities=7% Similarity=0.102 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHH-HHHHhCccCCCCCH-HHHHHHHHHhCCCCc
Q 016972 239 KFSQSQKEKMFE-FAERVGWKMQKRDD-DLVHEFCNEVGVDRT 279 (379)
Q Consensus 239 kFT~EQkekM~~-faEk~GWRIqk~d~-~~vq~fc~eiGv~r~ 279 (379)
.||.+|..+|+. ..+.++|+|..+.. .-+..|++.++++..
T Consensus 125 ~~~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~~~~~~ 167 (283)
T 1w98_B 125 ACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLNDL 167 (283)
T ss_dssp SSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHTCCSS
T ss_pred CCCHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHhccCch
Confidence 589999999988 78999999998776 578999999988654
No 379
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=21.85 E-value=71 Score=32.54 Aligned_cols=43 Identities=9% Similarity=0.016 Sum_probs=30.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCc-cCCCCCHHHHHHHHHHhCCCC
Q 016972 236 FRTKFSQSQKEKMFEFAERVGW-KMQKRDDDLVHEFCNEVGVDR 278 (379)
Q Consensus 236 ~RTkFT~EQkekM~~faEk~GW-RIqk~d~~~vq~fc~eiGv~r 278 (379)
.|.+||+||++.|++.|+..-- +-.+-+..++.++.+.+|+..
T Consensus 292 s~E~Lt~EEI~ELREaF~~fDkDgdG~IS~eELk~aLrsLG~~~ 335 (440)
T 3u0k_A 292 TRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP 335 (440)
T ss_dssp BCBCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCC
T ss_pred hHhhhhHHHHHHHHHHHHHHcCCCCCEECHHHHHHHHHHcCCCC
Confidence 4689999999999999887531 011345677777777777653
No 380
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=21.71 E-value=23 Score=27.47 Aligned_cols=19 Identities=11% Similarity=0.288 Sum_probs=9.6
Q ss_pred HHHHHhCCCCceeeeeccc
Q 016972 269 EFCNEVGVDRTVLKVWMHN 287 (379)
Q Consensus 269 ~fc~eiGv~r~V~KVWfhN 287 (379)
+||..+||++.+|.-|..+
T Consensus 27 ~lA~~~gis~~~i~~~e~g 45 (114)
T 3op9_A 27 QIAELLNVQTRTVAYYMSG 45 (114)
T ss_dssp HHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHCcCHHHHHHHHcC
Confidence 4555555555555555444
No 381
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=21.64 E-value=12 Score=29.78 Aligned_cols=28 Identities=0% Similarity=0.125 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 262 RDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 262 ~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
-+...++++|++.||++.+|-..|.|..
T Consensus 28 ~~~~t~~~IA~~agvs~~t~Y~~F~sK~ 55 (191)
T 3on4_A 28 YNAFSFKDIATAINIKTASIHYHFPSKE 55 (191)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred cccCCHHHHHHHhCCCcchhhhcCCCHH
Confidence 4456889999999999999999888754
No 382
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=21.61 E-value=13 Score=30.90 Aligned_cols=28 Identities=7% Similarity=0.196 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 262 RDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 262 ~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
-+...++++|++.||++.+|-.+|-|..
T Consensus 26 ~~~~s~~~IA~~aGvs~~tiY~~F~sKe 53 (202)
T 2d6y_A 26 IAGARIDRIAAEARANKQLIYAYYGNKG 53 (202)
T ss_dssp TTSCCHHHHHHHHTCCHHHHHHHHSSHH
T ss_pred cccCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 3445889999999999999999987654
No 383
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=21.47 E-value=22 Score=28.30 Aligned_cols=51 Identities=8% Similarity=-0.003 Sum_probs=33.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCc-cCCCCCHHHHHHHHHHhCCCCceeeeecc
Q 016972 236 FRTKFSQSQKEKMFEFAERVGW-KMQKRDDDLVHEFCNEVGVDRTVLKVWMH 286 (379)
Q Consensus 236 ~RTkFT~EQkekM~~faEk~GW-RIqk~d~~~vq~fc~eiGv~r~V~KVWfh 286 (379)
.+-.+|.+|++++++.|..+-= +-.+-+.+++..+...+|++...++.+|.
T Consensus 12 ~~~~ls~~~~~~~~~~F~~~D~d~dG~Is~~el~~~l~~~gl~~~el~~i~~ 63 (110)
T 1iq3_A 12 EPWRITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPELSYIWE 63 (110)
T ss_dssp SSCCCSSSSHHHHHHHHHHHCCSSSSEEEHHHHHHHCCSSSCSSCCHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4456899999999998888630 01123446666666677777766665554
No 384
>4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A*
Probab=21.43 E-value=72 Score=28.52 Aligned_cols=41 Identities=10% Similarity=0.064 Sum_probs=30.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCccCCCCCHHHHHHHHH-HhCCCC
Q 016972 237 RTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCN-EVGVDR 278 (379)
Q Consensus 237 RTkFT~EQkekM~~faEk~GWRIqk~d~~~vq~fc~-eiGv~r 278 (379)
|-.|+.|+.++|++.+..+ ++-...-++.++++.+ ++.-.+
T Consensus 206 r~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 247 (265)
T 4e6u_A 206 RKGWSKNTIQGLREAYKLI-FKSGLTSVQAIDQIKSEILPSVP 247 (265)
T ss_dssp HTTCCHHHHHHHHHHHHHH-HTSCCCHHHHHHHHHHHTTTTCG
T ss_pred ecCCCHHHHHHHHHHHHHH-HhcCCCHHHHHHHHHhhhcCCCH
Confidence 4469999999999988887 5555566677778776 554443
No 385
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=21.41 E-value=1.4e+02 Score=24.64 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=14.2
Q ss_pred CCCHHHHHHHHHHHHHhCccC
Q 016972 239 KFSQSQKEKMFEFAERVGWKM 259 (379)
Q Consensus 239 kFT~EQkekM~~faEk~GWRI 259 (379)
.+|.+|+++|+++.+...=.+
T Consensus 17 ~LTd~Qk~qir~L~~~~r~~~ 37 (108)
T 3o39_A 17 NLTDAQKQQIREIMKGQRDQM 37 (108)
T ss_dssp CCCHHHHHHHHHHHHTTTTSC
T ss_pred CCCHHHHHHHHHHHHHHHHhc
Confidence 467888888887777654333
No 386
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=21.37 E-value=27 Score=28.51 Aligned_cols=46 Identities=13% Similarity=0.174 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 243 SQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 243 EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
+-++++++.|.++=|+-.+ +...++++|++.||++.+|-..|.|..
T Consensus 12 ~~r~~Il~aA~~lf~~~G~-~~~s~~~IA~~aGvs~~tlY~~F~sKe 57 (197)
T 2hyt_A 12 ETRATLLATARKVFSERGY-ADTSMDDLTAQASLTRGALYHHFGDKK 57 (197)
T ss_dssp HHHHHHHHHHHHHHHHHCT-TTCCHHHHHHHHTCCTTHHHHHHSSHH
T ss_pred HHHHHHHHHHHHHHHHhCc-ccCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 4455555554444222224 445889999999999999999887743
No 387
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=21.36 E-value=32 Score=27.19 Aligned_cols=21 Identities=10% Similarity=0.102 Sum_probs=11.6
Q ss_pred HHHHHHhCCCCceeeeecccc
Q 016972 268 HEFCNEVGVDRTVLKVWMHNN 288 (379)
Q Consensus 268 q~fc~eiGv~r~V~KVWfhNn 288 (379)
++||..+||++..|.-|..+.
T Consensus 29 ~~lA~~~gis~~~is~~E~g~ 49 (126)
T 3ivp_A 29 EQVGAMIEIDPRYLTNIENKG 49 (126)
T ss_dssp HHHHHHHTCCHHHHHHHHHSC
T ss_pred HHHHHHhCcCHHHHHHHHCCC
Confidence 455555555555555555443
No 388
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=21.32 E-value=20 Score=29.40 Aligned_cols=47 Identities=11% Similarity=0.172 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccc
Q 016972 243 SQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKS 290 (379)
Q Consensus 243 EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~ 290 (379)
+-++++++.|.++=|+-.+ +...++++|++.||++.+|-..|.|...
T Consensus 14 ~~r~~Il~aA~~lf~~~G~-~~~s~~~IA~~agvs~~tlY~~F~sKe~ 60 (204)
T 2ibd_A 14 GRRTELLDIAATLFAERGL-RATTVRDIADAAGILSGSLYHHFDSKES 60 (204)
T ss_dssp HHHHHHHHHHHHHHHHHCS-TTCCHHHHHHHTTSCHHHHHHHCSCHHH
T ss_pred hhHHHHHHHHHHHHHHcCc-hhcCHHHHHHHhCCCchhHHHhcCCHHH
Confidence 4455555544444222223 4568899999999999999999987543
No 389
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=21.09 E-value=56 Score=30.24 Aligned_cols=45 Identities=18% Similarity=0.294 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHHHHhCccCCC-----CCHHHHHHHHHHhCCCCceeeee
Q 016972 239 KFSQSQKEKMFEFAERVGWKMQK-----RDDDLVHEFCNEVGVDRTVLKVW 284 (379)
Q Consensus 239 kFT~EQkekM~~faEk~GWRIqk-----~d~~~vq~fc~eiGv~r~V~KVW 284 (379)
.|+..|+..++.-++++||++-. ..++.+++|+ +.|+.-.+++|=
T Consensus 99 i~s~yqr~r~e~vc~~~gl~~~~PLW~~d~~~Ll~e~i-~~G~~aiiv~v~ 148 (237)
T 3rjz_A 99 LASKYQRKRIEKVAKELGLEVYTPAWGRDAKEYMRELL-NLGFKIMVVGVS 148 (237)
T ss_dssp --CCSHHHHHHHHHHHTTCEEECSSSSCCHHHHHHHHH-HTTCEEEEEEEE
T ss_pred cchHHHHHHHHHHHHHcCCEEEccccCCCHHHHHHHHH-HCCCEEEEEEEe
Confidence 46789999999999999988744 4567888887 579999999983
No 390
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=21.03 E-value=41 Score=24.30 Aligned_cols=45 Identities=7% Similarity=-0.028 Sum_probs=31.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcc-CCCCCHHHHHHHHHHhCCC
Q 016972 233 RKRFRTKFSQSQKEKMFEFAERVGWK-MQKRDDDLVHEFCNEVGVD 277 (379)
Q Consensus 233 kKR~RTkFT~EQkekM~~faEk~GWR-Iqk~d~~~vq~fc~eiGv~ 277 (379)
+.+....|+++|+++|+..|...--- -.+-+..++..+...+|+.
T Consensus 7 ~~~~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~ 52 (90)
T 1avs_A 7 QAEARAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQN 52 (90)
T ss_dssp CCSHHHHBCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCC
Confidence 34566679999999999988775200 1134567888888888864
No 391
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=20.74 E-value=41 Score=28.33 Aligned_cols=44 Identities=11% Similarity=0.092 Sum_probs=24.5
Q ss_pred CCCCCCCHHHHHHHHHH-------HHHhCccCCCCCHHHHHHHHHHhCCCCce
Q 016972 235 RFRTKFSQSQKEKMFEF-------AERVGWKMQKRDDDLVHEFCNEVGVDRTV 280 (379)
Q Consensus 235 R~RTkFT~EQkekM~~f-------aEk~GWRIqk~d~~~vq~fc~eiGv~r~V 280 (379)
|.+-.+|++|+.+.... .|+ | +...+....+.++|+.+||+..-
T Consensus 19 r~~~g~s~~~la~~~gis~~~ls~~e~-g-~~~~p~~~~l~~ia~~l~~~~~~ 69 (198)
T 2bnm_A 19 REQVKMDHAALASLLGETPETVAAWEN-G-EGGELTLTQLGRIAHVLGTSIGA 69 (198)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHT-T-TCTTCBHHHHHHHHHHTTSCTGG
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc-C-CCCCCCHHHHHHHHHHhCCCHHH
Confidence 33445677666654421 121 1 11146677788888888877543
No 392
>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional R transcription; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A*
Probab=20.73 E-value=31 Score=30.39 Aligned_cols=49 Identities=12% Similarity=0.154 Sum_probs=34.2
Q ss_pred CCCCCHHHH-HHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccc
Q 016972 237 RTKFSQSQK-EKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKS 290 (379)
Q Consensus 237 RTkFT~EQk-ekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~ 290 (379)
|..+|.+++ +.-.+.|.+.| -+...++++|+++||++..|-..|.|...
T Consensus 3 r~~~tr~~Il~AA~~l~~~~G-----~~~~S~r~IA~~aGvs~~tlY~hF~~K~~ 52 (234)
T 2opt_A 3 MAPLTQDRIVVTALGILDAEG-----LDALSMRRLAQELKTGHASLYAHVGNRDE 52 (234)
T ss_dssp CCCCCHHHHHHHHHHHHHHHC-----GGGCCHHHHHHHHTCCHHHHHHHHCSHHH
T ss_pred CCcCCHHHHHHHHHHHHHhCC-----ccccCHHHHHHHHCCChhHHHHHcCCHHH
Confidence 344555553 44455555555 34557899999999999999888877543
No 393
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=20.73 E-value=14 Score=29.19 Aligned_cols=40 Identities=8% Similarity=0.107 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecc
Q 016972 242 QSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMH 286 (379)
Q Consensus 242 ~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfh 286 (379)
.+..+++.++.+.. ..+.-.++++|+++||+++.|.-.|.
T Consensus 6 ~~~~~~~~~~i~~~-----~~~~~~~~~lA~~~~~S~~~l~r~fk 45 (120)
T 3mkl_A 6 PNMRTRVCTVINNN-----IAHEWTLARIASELLMSPSLLKKKLR 45 (120)
T ss_dssp CCHHHHHHHHHHTS-----TTSCCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-----ccCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 44566777776664 23334688999999999998887774
No 394
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=20.61 E-value=1.2e+02 Score=25.83 Aligned_cols=25 Identities=32% Similarity=0.626 Sum_probs=22.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC
Q 016972 232 GRKRFRTKFSQSQKEKMFEFAERVG 256 (379)
Q Consensus 232 ~kKR~RTkFT~EQkekM~~faEk~G 256 (379)
.++|.|-.||.|+-+.|.+..++.|
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G 50 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLG 50 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHC
Confidence 4678899999999999999999987
No 395
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=20.58 E-value=78 Score=21.83 Aligned_cols=20 Identities=25% Similarity=0.601 Sum_probs=18.4
Q ss_pred CCCCCHHHHHHHHHHHHHhC
Q 016972 237 RTKFSQSQKEKMFEFAERVG 256 (379)
Q Consensus 237 RTkFT~EQkekM~~faEk~G 256 (379)
|.+||+|+-++|+++.++.|
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G 22 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNG 22 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHhC
Confidence 67899999999999999987
No 396
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=20.55 E-value=19 Score=27.65 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=19.5
Q ss_pred HHHHHHHhCCCCceeeeeccc
Q 016972 267 VHEFCNEVGVDRTVLKVWMHN 287 (379)
Q Consensus 267 vq~fc~eiGv~r~V~KVWfhN 287 (379)
++++|+.+||++..|--|+.+
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhC
Confidence 689999999999999999975
No 397
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=20.51 E-value=1.6e+02 Score=26.96 Aligned_cols=41 Identities=10% Similarity=0.110 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHH-HHHHhCccCCCCCH-HHHHHHHHHhCCCCc
Q 016972 239 KFSQSQKEKMFE-FAERVGWKMQKRDD-DLVHEFCNEVGVDRT 279 (379)
Q Consensus 239 kFT~EQkekM~~-faEk~GWRIqk~d~-~~vq~fc~eiGv~r~ 279 (379)
.||.+|..+|+. .-+.++|+|..+.. .-++.|.+.++++..
T Consensus 123 ~yt~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~~~~~~ 165 (252)
T 1f5q_B 123 ATTADKLLTLEVKSLDTLSWVADRCLSTDLICYILHIMHAPRE 165 (252)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHH
T ss_pred CCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCcc
Confidence 699999999998 88999999999876 467788888887654
No 398
>2y2z_A SIM16, SIMR, putative repressor simreg2; transcription, simocyclinone regulator, TETR-family; 1.95A {Streptomyces antibioticus} PDB: 2y30_A* 2y31_A* 3zql_A
Probab=20.25 E-value=35 Score=30.73 Aligned_cols=47 Identities=15% Similarity=0.263 Sum_probs=32.9
Q ss_pred CCCHHHH-HHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeecccccc
Q 016972 239 KFSQSQK-EKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHNNKS 290 (379)
Q Consensus 239 kFT~EQk-ekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhNnK~ 290 (379)
.+|.|++ +.-.+.|.+.| -+...++++|+++||++.+|-..|.|...
T Consensus 26 ~~tr~~Il~AA~~L~~e~G-----~~~~Smr~IA~~aGVs~~tlY~hF~~K~~ 73 (267)
T 2y2z_A 26 TLSRDQIVRAAVKVADTEG-----VEAASMRRVAAELGAGTMSLYYYVPTKED 73 (267)
T ss_dssp EECHHHHHHHHHHHHHHHC-----TTTCCHHHHHHHHTCCHHHHHTTCCSHHH
T ss_pred cccHHHHHHHHHHHHHhcC-----cccCCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 5666653 33344555555 34457899999999999999988876543
No 399
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=20.19 E-value=10 Score=31.75 Aligned_cols=28 Identities=7% Similarity=0.109 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 016972 262 RDDDLVHEFCNEVGVDRTVLKVWMHNNK 289 (379)
Q Consensus 262 ~d~~~vq~fc~eiGv~r~V~KVWfhNnK 289 (379)
-+...++++|++.||++.+|-..|.|..
T Consensus 23 ~~~~t~~~IA~~Agvs~~t~Y~~F~sK~ 50 (228)
T 3nnr_A 23 ERNITTNHIAAHLAISPGNLYYHFRNKS 50 (228)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred hhhcCHHHHHHHhCCCCccchhcCCCHH
Confidence 3456889999999999999998887754
No 400
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=20.17 E-value=26 Score=27.32 Aligned_cols=43 Identities=16% Similarity=0.421 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHhCCCCceeeeeccc
Q 016972 241 SQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEVGVDRTVLKVWMHN 287 (379)
Q Consensus 241 T~EQkekM~~faEk~GWRIqk~d~~~vq~fc~eiGv~r~V~KVWfhN 287 (379)
+.+..++++++...++ --+...+.++|+++||++..|+-.+..
T Consensus 8 ~~~~~~~IL~~L~~~~----pg~~~t~~eLA~~Lgvsr~tV~~~L~~ 50 (81)
T 1qbj_A 8 YQDQEQRILKFLEELG----EGKATTAHDLSGKLGTPKKEINRVLYS 50 (81)
T ss_dssp HHHHHHHHHHHHHHHC----TTCCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcC----CCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 3555666777777653 112346789999999999988765544
Done!