Query 016973
Match_columns 379
No_of_seqs 339 out of 1969
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 04:29:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016973.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016973hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03088 SGT1, suppressor of 100.0 1.2E-89 2.5E-94 667.9 38.9 356 1-379 1-356 (356)
2 KOG1309 Suppressor of G2 allel 100.0 3.3E-70 7.2E-75 456.7 15.9 195 172-377 2-196 (196)
3 COG5091 SGT1 Suppressor of G2 100.0 3.2E-54 6.9E-59 382.6 16.7 347 9-377 2-368 (368)
4 PF05002 SGS: SGS domain ; In 100.0 3.1E-43 6.8E-48 262.5 1.3 81 297-377 2-82 (82)
5 KOG3260 Calcyclin-binding prot 99.9 1.2E-27 2.5E-32 200.3 8.3 149 169-349 65-214 (224)
6 cd06488 p23_melusin_like p23_l 99.9 2.1E-22 4.6E-27 156.2 10.2 85 181-265 3-87 (87)
7 cd00237 p23 p23 binds heat sho 99.9 3.9E-22 8.5E-27 159.5 9.9 102 180-304 3-105 (106)
8 cd06489 p23_CS_hSgt1_like p23_ 99.9 9.6E-22 2.1E-26 151.7 9.7 84 182-265 1-84 (84)
9 cd06465 p23_hB-ind1_like p23_l 99.8 8.8E-21 1.9E-25 153.4 9.8 86 180-267 2-89 (108)
10 KOG0553 TPR repeat-containing 99.8 1.9E-20 4.2E-25 171.3 13.1 120 1-120 80-199 (304)
11 cd06468 p23_CacyBP p23_like do 99.8 1.1E-19 2.3E-24 142.8 10.5 88 178-265 1-92 (92)
12 cd06466 p23_CS_SGT1_like p23_l 99.8 2.9E-19 6.2E-24 137.8 10.0 84 182-265 1-84 (84)
13 cd06490 p23_NCB5OR p23_like do 99.8 2.3E-18 5E-23 133.3 9.8 83 181-265 1-87 (87)
14 KOG3158 HSP90 co-chaperone p23 99.8 6.8E-19 1.5E-23 147.7 5.4 113 178-313 7-121 (180)
15 KOG0548 Molecular co-chaperone 99.7 3.9E-16 8.5E-21 152.2 14.0 117 2-118 358-474 (539)
16 cd06469 p23_DYX1C1_like p23_li 99.7 2.1E-16 4.6E-21 120.0 9.1 78 183-265 1-78 (78)
17 PF04969 CS: CS domain; Inter 99.7 3.2E-16 6.9E-21 118.9 9.5 76 180-255 2-79 (79)
18 KOG0376 Serine-threonine phosp 99.7 2.9E-17 6.2E-22 158.9 4.4 319 1-377 3-326 (476)
19 cd06463 p23_like Proteins cont 99.7 5.9E-16 1.3E-20 118.6 10.1 83 183-265 1-84 (84)
20 cd06493 p23_NUDCD1_like p23_NU 99.7 5.5E-16 1.2E-20 119.7 9.5 82 181-265 1-85 (85)
21 PRK15359 type III secretion sy 99.7 5.7E-15 1.2E-19 125.6 16.4 116 4-119 26-141 (144)
22 cd06467 p23_NUDC_like p23_like 99.6 1E-15 2.2E-20 118.2 9.7 81 181-264 1-84 (85)
23 PRK15363 pathogenicity island 99.6 5.3E-14 1.1E-18 119.2 15.6 118 3-120 36-153 (157)
24 KOG0543 FKBP-type peptidyl-pro 99.6 2.5E-14 5.4E-19 136.3 14.9 119 2-120 208-341 (397)
25 KOG4234 TPR repeat-containing 99.6 3.9E-14 8.4E-19 122.8 13.2 118 2-119 95-217 (271)
26 KOG0548 Molecular co-chaperone 99.6 1.5E-14 3.3E-19 141.2 11.8 114 1-114 1-114 (539)
27 TIGR02552 LcrH_SycD type III s 99.5 3.3E-13 7.2E-18 112.8 15.7 116 3-118 18-133 (135)
28 cd06494 p23_NUDCD2_like p23-li 99.5 6.3E-14 1.4E-18 109.4 9.0 81 180-264 7-92 (93)
29 KOG4648 Uncharacterized conser 99.5 8.2E-14 1.8E-18 129.5 9.7 117 3-119 98-214 (536)
30 PRK11189 lipoprotein NlpI; Pro 99.4 2.8E-12 6.1E-17 122.1 16.6 108 2-109 64-171 (296)
31 KOG1667 Zn2+-binding protein M 99.4 3.4E-13 7.5E-18 119.5 8.8 91 172-267 213-304 (320)
32 KOG0547 Translocase of outer m 99.4 1.3E-12 2.7E-17 126.5 12.7 119 2-120 115-234 (606)
33 PRK10370 formate-dependent nit 99.4 6.6E-12 1.4E-16 112.5 15.8 112 2-113 73-187 (198)
34 KOG0550 Molecular chaperone (D 99.4 2.4E-12 5.1E-17 122.4 11.0 117 3-120 250-370 (486)
35 cd06492 p23_mNUDC_like p23-lik 99.4 3.8E-12 8.2E-17 98.4 9.6 82 181-265 1-87 (87)
36 TIGR02795 tol_pal_ybgF tol-pal 99.4 2.2E-11 4.8E-16 98.7 14.3 108 2-109 2-115 (119)
37 KOG4626 O-linked N-acetylgluco 99.3 2.7E-12 5.9E-17 127.1 8.9 119 2-120 252-370 (966)
38 cd06495 p23_NUDCD3_like p23-li 99.3 1.1E-11 2.4E-16 98.2 10.3 88 180-267 6-96 (102)
39 PRK15331 chaperone protein Sic 99.3 4.8E-11 1E-15 101.7 13.9 116 3-119 38-153 (165)
40 TIGR00990 3a0801s09 mitochondr 99.3 4.3E-11 9.2E-16 125.3 16.4 111 4-114 333-443 (615)
41 TIGR00990 3a0801s09 mitochondr 99.3 4.1E-11 8.8E-16 125.4 16.1 118 3-120 366-483 (615)
42 KOG4626 O-linked N-acetylgluco 99.3 1.8E-11 3.8E-16 121.5 12.1 113 2-114 388-500 (966)
43 cd00189 TPR Tetratricopeptide 99.3 6.9E-11 1.5E-15 89.5 12.1 99 4-102 2-100 (100)
44 PF13414 TPR_11: TPR repeat; P 99.2 3.5E-11 7.7E-16 88.6 8.1 66 36-101 3-69 (69)
45 KOG4642 Chaperone-dependent E3 99.2 1.7E-11 3.7E-16 109.1 7.3 100 1-100 9-108 (284)
46 KOG1126 DNA-binding cell divis 99.2 1.3E-11 2.8E-16 123.6 7.3 119 3-121 422-540 (638)
47 PF13414 TPR_11: TPR repeat; P 99.2 4.4E-11 9.5E-16 88.1 8.2 66 2-67 3-69 (69)
48 PRK02603 photosystem I assembl 99.2 3E-10 6.6E-15 99.4 14.8 110 2-111 35-162 (172)
49 PRK12370 invasion protein regu 99.2 3.2E-10 6.9E-15 117.2 15.4 89 16-104 318-406 (553)
50 PRK09782 bacteriophage N4 rece 99.2 4.9E-10 1.1E-14 121.6 16.9 114 3-116 610-723 (987)
51 KOG0551 Hsp90 co-chaperone CNS 99.2 1.4E-10 3E-15 107.8 10.8 102 2-103 81-186 (390)
52 KOG1126 DNA-binding cell divis 99.2 1.4E-10 3.1E-15 116.2 11.5 118 3-120 490-607 (638)
53 KOG0547 Translocase of outer m 99.2 1.7E-10 3.7E-15 111.9 11.5 120 1-120 325-444 (606)
54 KOG0624 dsRNA-activated protei 99.2 2E-10 4.4E-15 107.1 11.6 103 3-105 39-141 (504)
55 PRK15359 type III secretion sy 99.2 1.8E-10 3.9E-15 97.9 10.3 96 22-120 13-108 (144)
56 PF12895 Apc3: Anaphase-promot 99.2 6.8E-11 1.5E-15 90.8 7.0 82 14-96 1-84 (84)
57 TIGR02521 type_IV_pilW type IV 99.2 1.1E-09 2.3E-14 98.1 15.8 117 2-118 31-149 (234)
58 COG3063 PilF Tfp pilus assembl 99.2 5.1E-10 1.1E-14 99.6 13.2 118 2-119 35-154 (250)
59 PRK15179 Vi polysaccharide bio 99.2 4.9E-10 1.1E-14 117.4 15.3 118 2-119 86-203 (694)
60 PRK12370 invasion protein regu 99.2 6.5E-10 1.4E-14 114.9 15.4 119 2-120 338-457 (553)
61 KOG1125 TPR repeat-containing 99.1 8.9E-11 1.9E-15 116.0 8.2 100 3-102 431-530 (579)
62 TIGR03302 OM_YfiO outer membra 99.1 1.3E-09 2.9E-14 99.8 15.5 109 2-110 33-155 (235)
63 PRK10370 formate-dependent nit 99.1 7.5E-10 1.6E-14 99.2 13.0 106 15-120 52-160 (198)
64 PRK11189 lipoprotein NlpI; Pro 99.1 2.5E-09 5.5E-14 101.9 17.3 113 2-114 98-281 (296)
65 KOG1155 Anaphase-promoting com 99.1 5.2E-10 1.1E-14 108.0 11.8 113 8-120 336-448 (559)
66 TIGR02521 type_IV_pilW type IV 99.1 2.6E-09 5.7E-14 95.6 15.6 117 3-119 66-184 (234)
67 PRK10803 tol-pal system protei 99.1 2.8E-09 6.2E-14 99.4 16.1 111 3-113 143-260 (263)
68 KOG2076 RNA polymerase III tra 99.1 1.7E-09 3.6E-14 111.7 15.4 118 3-120 140-257 (895)
69 KOG1155 Anaphase-promoting com 99.1 1.4E-09 3E-14 105.1 13.8 118 3-120 365-482 (559)
70 CHL00033 ycf3 photosystem I as 99.1 4.1E-09 8.8E-14 91.8 15.5 103 2-104 35-154 (168)
71 TIGR02552 LcrH_SycD type III s 99.1 1E-09 2.2E-14 91.5 11.1 98 23-120 4-101 (135)
72 cd00298 ACD_sHsps_p23-like Thi 99.1 4.1E-10 8.8E-15 84.4 7.3 73 183-255 1-80 (80)
73 PRK09782 bacteriophage N4 rece 99.1 2.8E-09 6.1E-14 115.8 16.1 111 9-120 583-693 (987)
74 PF13429 TPR_15: Tetratricopep 99.1 1E-09 2.2E-14 103.5 10.8 118 3-120 147-264 (280)
75 KOG0545 Aryl-hydrocarbon recep 99.0 2.9E-09 6.2E-14 95.4 12.6 117 4-120 180-315 (329)
76 PF13432 TPR_16: Tetratricopep 99.0 7E-10 1.5E-14 80.6 7.0 62 42-103 3-64 (65)
77 COG5010 TadD Flp pilus assembl 99.0 5.3E-09 1.2E-13 94.8 14.0 116 5-120 103-218 (257)
78 PLN02789 farnesyltranstransfer 99.0 6.7E-09 1.4E-13 99.7 15.2 114 3-116 72-188 (320)
79 PRK15174 Vi polysaccharide exp 99.0 4.7E-09 1E-13 110.5 15.2 104 4-107 248-355 (656)
80 PF13432 TPR_16: Tetratricopep 99.0 1.3E-09 2.8E-14 79.3 7.6 65 6-70 1-65 (65)
81 PRK15174 Vi polysaccharide exp 99.0 5.5E-09 1.2E-13 110.0 15.2 114 7-120 217-334 (656)
82 KOG4555 TPR repeat-containing 99.0 1.1E-08 2.5E-13 83.2 13.4 101 3-103 44-148 (175)
83 PF13512 TPR_18: Tetratricopep 99.0 1E-08 2.2E-13 85.6 13.5 107 2-108 10-137 (142)
84 KOG2265 Nuclear distribution p 99.0 2.3E-09 5E-14 90.9 9.2 85 181-268 21-109 (179)
85 COG4235 Cytochrome c biogenesi 99.0 2.4E-08 5.1E-13 92.7 16.1 116 2-117 156-274 (287)
86 COG3063 PilF Tfp pilus assembl 99.0 9.8E-09 2.1E-13 91.5 12.8 114 3-116 70-185 (250)
87 PRK15179 Vi polysaccharide bio 99.0 1.7E-08 3.7E-13 105.9 16.1 117 2-118 120-237 (694)
88 TIGR03302 OM_YfiO outer membra 98.9 1.5E-08 3.4E-13 92.7 13.7 118 3-120 71-219 (235)
89 KOG2003 TPR repeat-containing 98.9 2.9E-09 6.3E-14 102.6 8.9 118 2-119 490-607 (840)
90 PRK10049 pgaA outer membrane p 98.9 2.2E-08 4.9E-13 107.3 16.8 112 3-115 50-161 (765)
91 COG1729 Uncharacterized protei 98.9 4E-08 8.7E-13 90.1 14.8 111 3-113 142-258 (262)
92 COG4783 Putative Zn-dependent 98.9 3.1E-08 6.7E-13 96.8 14.8 117 4-120 308-424 (484)
93 PLN02789 farnesyltranstransfer 98.9 3.2E-08 6.9E-13 95.0 14.8 110 11-120 46-158 (320)
94 TIGR02917 PEP_TPR_lipo putativ 98.9 2.7E-08 5.9E-13 106.7 15.8 116 3-118 126-241 (899)
95 PF13525 YfiO: Outer membrane 98.9 1.1E-07 2.3E-12 85.6 16.1 119 2-120 5-143 (203)
96 PRK15363 pathogenicity island 98.9 1.9E-08 4E-13 85.5 10.4 92 29-120 27-119 (157)
97 PRK11447 cellulose synthase su 98.9 4.1E-08 8.9E-13 109.9 16.1 110 4-113 305-428 (1157)
98 PRK11447 cellulose synthase su 98.8 5.2E-08 1.1E-12 109.0 15.8 110 7-116 356-507 (1157)
99 PF13371 TPR_9: Tetratricopept 98.8 2.6E-08 5.7E-13 73.9 9.2 67 10-76 3-69 (73)
100 PRK11788 tetratricopeptide rep 98.8 8.5E-08 1.8E-12 94.2 15.5 99 6-104 184-283 (389)
101 PF13371 TPR_9: Tetratricopept 98.8 1.6E-08 3.6E-13 75.0 8.0 71 43-113 2-72 (73)
102 TIGR02917 PEP_TPR_lipo putativ 98.8 6.1E-08 1.3E-12 103.9 15.5 113 5-118 773-885 (899)
103 PF14559 TPR_19: Tetratricopep 98.8 1.2E-08 2.5E-13 74.7 6.8 65 13-77 2-66 (68)
104 PRK10866 outer membrane biogen 98.8 2E-07 4.4E-12 86.1 16.6 119 2-120 32-177 (243)
105 PRK10049 pgaA outer membrane p 98.8 9.7E-08 2.1E-12 102.5 16.2 107 4-110 361-467 (765)
106 PRK11788 tetratricopeptide rep 98.8 8.2E-08 1.8E-12 94.3 14.6 116 4-119 109-229 (389)
107 PF09976 TPR_21: Tetratricopep 98.8 7.1E-08 1.5E-12 81.9 11.7 92 4-95 13-110 (145)
108 KOG1173 Anaphase-promoting com 98.8 4.4E-08 9.6E-13 96.9 11.6 112 5-116 417-535 (611)
109 KOG4162 Predicted calmodulin-b 98.8 4.7E-08 1E-12 99.7 12.1 103 3-105 685-789 (799)
110 KOG0624 dsRNA-activated protei 98.8 1.9E-07 4.2E-12 87.6 14.6 116 4-119 157-272 (504)
111 PF14559 TPR_19: Tetratricopep 98.8 3.1E-08 6.8E-13 72.4 7.2 68 46-113 1-68 (68)
112 PF12688 TPR_5: Tetratrico pep 98.7 2.9E-07 6.2E-12 75.5 13.4 96 3-98 2-103 (120)
113 PF06552 TOM20_plant: Plant sp 98.7 1.3E-07 2.9E-12 81.6 11.7 98 18-115 7-125 (186)
114 PLN03088 SGT1, suppressor of 98.7 8.9E-08 1.9E-12 93.6 12.0 83 2-84 36-118 (356)
115 KOG1125 TPR repeat-containing 98.7 7.5E-08 1.6E-12 95.6 10.3 74 37-110 431-504 (579)
116 KOG3060 Uncharacterized conser 98.7 5E-07 1.1E-11 81.7 14.6 115 6-120 90-241 (289)
117 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 8.9E-08 1.9E-12 93.8 9.8 64 2-65 75-141 (453)
118 KOG1308 Hsp70-interacting prot 98.7 1.4E-08 2.9E-13 95.2 3.3 111 2-113 114-224 (377)
119 PRK10153 DNA-binding transcrip 98.7 5E-07 1.1E-11 92.2 15.0 102 3-105 340-488 (517)
120 CHL00033 ycf3 photosystem I as 98.7 2.4E-07 5.1E-12 80.6 10.8 111 8-118 5-120 (168)
121 PF13429 TPR_15: Tetratricopep 98.6 1.6E-07 3.5E-12 88.5 10.2 115 6-120 114-230 (280)
122 PLN03098 LPA1 LOW PSII ACCUMUL 98.6 3.5E-07 7.7E-12 89.7 12.7 69 31-99 70-141 (453)
123 COG5010 TadD Flp pilus assembl 98.6 4.2E-07 9.1E-12 82.6 11.9 111 6-116 70-180 (257)
124 KOG0550 Molecular chaperone (D 98.6 1.3E-07 2.7E-12 90.7 8.8 119 2-120 203-337 (486)
125 COG4785 NlpI Lipoprotein NlpI, 98.6 1.6E-07 3.5E-12 83.0 8.9 116 2-117 65-180 (297)
126 PRK14574 hmsH outer membrane p 98.6 5E-07 1.1E-11 96.7 14.3 111 3-113 35-145 (822)
127 COG4783 Putative Zn-dependent 98.6 7.9E-07 1.7E-11 87.1 14.2 112 6-117 344-455 (484)
128 KOG0543 FKBP-type peptidyl-pro 98.6 3.9E-07 8.5E-12 87.6 11.7 96 4-99 259-355 (397)
129 KOG1156 N-terminal acetyltrans 98.6 4.1E-07 8.9E-12 91.4 12.0 118 3-120 8-125 (700)
130 cd00189 TPR Tetratricopeptide 98.6 9E-07 2E-11 66.4 10.7 83 38-120 2-84 (100)
131 cd05804 StaR_like StaR_like; a 98.5 1E-06 2.2E-11 85.5 13.2 97 5-101 117-217 (355)
132 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 1.4E-06 3.1E-11 85.5 13.2 89 8-96 206-294 (395)
133 KOG2002 TPR-containing nuclear 98.5 1.2E-06 2.5E-11 91.7 12.8 114 1-114 306-424 (1018)
134 PRK11906 transcriptional regul 98.5 2.6E-06 5.7E-11 83.7 14.3 113 4-116 257-384 (458)
135 PF09976 TPR_21: Tetratricopep 98.5 5.3E-06 1.1E-10 70.4 14.5 93 4-97 50-145 (145)
136 KOG3060 Uncharacterized conser 98.5 4.4E-06 9.4E-11 75.7 14.2 88 2-89 154-244 (289)
137 KOG0553 TPR repeat-containing 98.5 6.8E-07 1.5E-11 82.7 9.3 85 3-87 116-200 (304)
138 PRK02603 photosystem I assembl 98.5 9.3E-07 2E-11 77.2 9.6 86 34-119 33-121 (172)
139 PF13424 TPR_12: Tetratricopep 98.5 1.9E-07 4.2E-12 70.2 4.5 64 36-99 5-75 (78)
140 KOG1128 Uncharacterized conser 98.5 4.4E-07 9.5E-12 92.4 8.2 106 2-107 485-590 (777)
141 PRK14574 hmsH outer membrane p 98.5 2.7E-06 5.8E-11 91.2 14.5 114 5-119 105-218 (822)
142 KOG2076 RNA polymerase III tra 98.5 4.9E-06 1.1E-10 86.6 15.7 100 2-101 173-272 (895)
143 KOG1310 WD40 repeat protein [G 98.4 5.7E-07 1.2E-11 88.5 8.1 113 2-114 374-489 (758)
144 TIGR00540 hemY_coli hemY prote 98.4 8.1E-06 1.8E-10 81.3 16.7 118 3-120 85-203 (409)
145 PRK14720 transcript cleavage f 98.4 2.6E-06 5.7E-11 90.8 13.6 112 3-116 32-162 (906)
146 KOG1129 TPR repeat-containing 98.4 6.4E-07 1.4E-11 83.7 7.5 95 5-99 293-387 (478)
147 TIGR02795 tol_pal_ybgF tol-pal 98.4 3.2E-06 7E-11 68.1 10.6 84 36-119 2-91 (119)
148 KOG2002 TPR-containing nuclear 98.4 3.8E-06 8.2E-11 88.0 12.6 115 3-117 271-389 (1018)
149 PRK11906 transcriptional regul 98.4 5.8E-06 1.2E-10 81.4 12.9 91 15-105 317-407 (458)
150 PF13424 TPR_12: Tetratricopep 98.3 1.3E-06 2.8E-11 65.6 6.3 65 2-66 5-76 (78)
151 PRK10747 putative protoheme IX 98.3 2.5E-05 5.4E-10 77.6 16.5 119 2-120 84-203 (398)
152 cd05804 StaR_like StaR_like; a 98.3 7.7E-06 1.7E-10 79.4 12.7 98 4-101 45-179 (355)
153 KOG1173 Anaphase-promoting com 98.3 5.4E-06 1.2E-10 82.4 11.1 111 3-113 313-423 (611)
154 KOG1129 TPR repeat-containing 98.3 4.2E-06 9E-11 78.3 9.2 114 3-116 257-370 (478)
155 TIGR00540 hemY_coli hemY prote 98.3 1.3E-05 2.8E-10 79.9 13.4 117 3-120 264-386 (409)
156 KOG4162 Predicted calmodulin-b 98.3 1.1E-05 2.3E-10 82.9 12.5 117 4-120 652-770 (799)
157 KOG1840 Kinesin light chain [C 98.2 5.7E-06 1.2E-10 83.6 10.4 99 2-100 241-355 (508)
158 COG4235 Cytochrome c biogenesi 98.2 2.1E-05 4.6E-10 73.2 13.0 106 15-120 135-243 (287)
159 KOG1840 Kinesin light chain [C 98.2 7.2E-06 1.6E-10 82.8 10.5 97 4-100 201-313 (508)
160 PF12895 Apc3: Anaphase-promot 98.2 2.2E-06 4.8E-11 65.5 5.4 58 4-62 27-84 (84)
161 KOG1174 Anaphase-promoting com 98.2 9.7E-06 2.1E-10 78.0 10.2 109 2-110 300-408 (564)
162 PF13525 YfiO: Outer membrane 98.2 7E-05 1.5E-09 67.3 15.3 111 3-113 43-184 (203)
163 PRK14720 transcript cleavage f 98.2 2.9E-05 6.3E-10 83.0 14.3 112 3-115 117-268 (906)
164 PRK15331 chaperone protein Sic 98.2 8.5E-06 1.8E-10 69.8 8.3 89 32-120 33-121 (165)
165 PF12569 NARP1: NMDA receptor- 98.2 5.3E-05 1.1E-09 77.2 15.6 77 37-113 195-271 (517)
166 KOG1174 Anaphase-promoting com 98.2 1.8E-05 4E-10 76.1 11.3 117 4-120 234-384 (564)
167 KOG1127 TPR repeat-containing 98.2 6.3E-06 1.4E-10 86.5 8.6 118 2-119 492-645 (1238)
168 KOG2003 TPR repeat-containing 98.1 2.4E-05 5.1E-10 76.1 11.5 112 3-114 525-636 (840)
169 COG4700 Uncharacterized protei 98.1 5.6E-05 1.2E-09 65.7 12.6 101 5-105 92-195 (251)
170 PRK10747 putative protoheme IX 98.1 4.3E-05 9.3E-10 75.9 13.8 113 4-120 265-377 (398)
171 KOG0495 HAT repeat protein [RN 98.1 3.4E-05 7.4E-10 78.0 12.5 115 6-120 588-735 (913)
172 KOG4234 TPR repeat-containing 98.1 1.5E-05 3.2E-10 70.0 8.8 70 4-73 136-205 (271)
173 COG2956 Predicted N-acetylgluc 98.1 5.6E-05 1.2E-09 70.9 13.0 101 4-104 182-283 (389)
174 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 5.6E-05 1.2E-09 74.4 13.4 108 11-121 178-285 (395)
175 COG2956 Predicted N-acetylgluc 98.1 6.5E-05 1.4E-09 70.4 12.7 114 7-120 146-265 (389)
176 COG4105 ComL DNA uptake lipopr 98.1 0.00019 4E-09 65.7 15.5 118 2-119 34-168 (254)
177 PRK10866 outer membrane biogen 98.0 0.00022 4.7E-09 66.0 15.7 114 3-116 70-221 (243)
178 KOG1127 TPR repeat-containing 98.0 6.4E-05 1.4E-09 79.2 12.9 104 1-104 1-108 (1238)
179 PF12688 TPR_5: Tetratrico pep 98.0 4.2E-05 9.1E-10 62.7 9.3 84 37-120 2-91 (120)
180 KOG4648 Uncharacterized conser 98.0 8E-06 1.7E-10 76.9 5.5 82 39-120 100-181 (536)
181 KOG1156 N-terminal acetyltrans 98.0 4.7E-05 1E-09 76.9 10.8 118 3-120 42-159 (700)
182 PF12569 NARP1: NMDA receptor- 98.0 0.00022 4.7E-09 72.8 15.2 97 4-100 196-292 (517)
183 PF13428 TPR_14: Tetratricopep 98.0 2E-05 4.3E-10 52.5 5.2 42 37-78 2-43 (44)
184 PF04733 Coatomer_E: Coatomer 97.9 6E-05 1.3E-09 71.5 10.3 89 17-105 182-271 (290)
185 PF00515 TPR_1: Tetratricopept 97.9 1.3E-05 2.9E-10 50.0 4.0 32 71-102 2-33 (34)
186 PF03704 BTAD: Bacterial trans 97.9 0.00029 6.3E-09 59.5 13.5 95 4-98 8-124 (146)
187 PF07719 TPR_2: Tetratricopept 97.9 2.4E-05 5.2E-10 48.6 4.7 34 70-103 1-34 (34)
188 PF13431 TPR_17: Tetratricopep 97.9 1.3E-05 2.8E-10 50.3 3.2 32 25-56 2-33 (34)
189 KOG0495 HAT repeat protein [RN 97.9 0.00014 3.1E-09 73.7 12.1 114 4-117 653-766 (913)
190 PF14938 SNAP: Soluble NSF att 97.9 0.00011 2.3E-09 69.6 10.8 103 2-104 114-230 (282)
191 KOG1128 Uncharacterized conser 97.9 5.6E-05 1.2E-09 77.4 9.2 99 3-101 520-618 (777)
192 PRK10803 tol-pal system protei 97.9 0.00014 3E-09 68.0 11.2 84 36-119 142-232 (263)
193 KOG4340 Uncharacterized conser 97.9 0.00018 3.9E-09 66.9 11.2 111 11-125 19-129 (459)
194 PF13431 TPR_17: Tetratricopep 97.8 1.8E-05 3.8E-10 49.7 3.2 33 58-90 1-33 (34)
195 KOG3785 Uncharacterized conser 97.8 0.00012 2.6E-09 69.4 10.0 105 10-118 30-135 (557)
196 PF12968 DUF3856: Domain of Un 97.8 0.00026 5.7E-09 57.0 10.3 95 5-99 12-129 (144)
197 PF04733 Coatomer_E: Coatomer 97.8 0.00018 3.9E-09 68.3 11.2 114 6-119 135-250 (290)
198 PF00515 TPR_1: Tetratricopept 97.8 4.5E-05 9.8E-10 47.5 4.5 32 37-68 2-33 (34)
199 COG0071 IbpA Molecular chapero 97.8 0.00012 2.6E-09 62.2 8.5 78 181-258 43-135 (146)
200 PF13428 TPR_14: Tetratricopep 97.8 5.4E-05 1.2E-09 50.4 5.0 43 70-112 1-43 (44)
201 COG3118 Thioredoxin domain-con 97.8 0.001 2.2E-08 62.0 14.9 98 4-101 136-267 (304)
202 KOG2376 Signal recognition par 97.7 0.00027 6E-09 70.9 11.5 101 3-106 13-146 (652)
203 KOG3785 Uncharacterized conser 97.7 0.00042 9.2E-09 65.8 12.0 114 6-119 61-200 (557)
204 KOG2376 Signal recognition par 97.7 0.00039 8.4E-09 69.9 12.0 21 74-94 83-103 (652)
205 PF14853 Fis1_TPR_C: Fis1 C-te 97.7 0.00025 5.5E-09 49.1 7.1 49 71-119 2-50 (53)
206 cd06472 ACD_ScHsp26_like Alpha 97.7 0.00025 5.5E-09 55.2 7.9 75 181-255 2-92 (92)
207 PF13512 TPR_18: Tetratricopep 97.6 0.00098 2.1E-08 55.9 11.5 71 35-105 9-82 (142)
208 KOG4340 Uncharacterized conser 97.6 0.00016 3.5E-09 67.1 7.3 92 2-93 144-264 (459)
209 COG4785 NlpI Lipoprotein NlpI, 97.6 0.00031 6.8E-09 62.5 8.4 100 1-100 98-267 (297)
210 PF07719 TPR_2: Tetratricopept 97.6 0.00018 3.9E-09 44.5 5.0 32 37-68 2-33 (34)
211 PF14938 SNAP: Soluble NSF att 97.6 0.00033 7.1E-09 66.3 9.1 98 3-101 36-146 (282)
212 KOG2053 Mitochondrial inherita 97.6 0.0015 3.3E-08 68.5 14.0 107 9-116 16-122 (932)
213 PRK10153 DNA-binding transcrip 97.5 0.00046 9.9E-09 70.7 10.1 67 4-71 422-488 (517)
214 KOG4379 Uncharacterized conser 97.5 0.00014 3E-09 70.5 5.8 86 179-268 290-378 (596)
215 PF06552 TOM20_plant: Plant sp 97.5 0.00086 1.9E-08 58.2 9.3 69 2-70 25-114 (186)
216 COG0457 NrfG FOG: TPR repeat [ 97.4 0.0048 1E-07 53.1 14.0 98 5-102 98-199 (291)
217 PF04781 DUF627: Protein of un 97.4 0.0014 3.1E-08 52.3 9.3 92 8-99 2-107 (111)
218 COG3071 HemY Uncharacterized e 97.4 0.0053 1.2E-07 59.2 14.7 118 3-120 85-203 (400)
219 KOG0546 HSP90 co-chaperone CPR 97.4 0.00023 4.9E-09 67.6 5.3 117 4-120 224-359 (372)
220 COG2976 Uncharacterized protei 97.4 0.0032 6.9E-08 55.3 11.9 99 5-104 92-193 (207)
221 cd06464 ACD_sHsps-like Alpha-c 97.4 0.0008 1.7E-08 51.3 7.5 74 182-255 1-88 (88)
222 PRK10941 hypothetical protein; 97.4 0.0017 3.7E-08 60.8 10.9 77 37-113 182-258 (269)
223 PF00011 HSP20: Hsp20/alpha cr 97.4 0.0011 2.4E-08 52.5 8.3 77 182-258 1-90 (102)
224 PF13181 TPR_8: Tetratricopept 97.3 0.00036 7.8E-09 43.2 3.9 32 71-102 2-33 (34)
225 PF15015 NYD-SP12_N: Spermatog 97.3 0.0014 3.1E-08 63.5 9.6 94 5-98 179-290 (569)
226 KOG4642 Chaperone-dependent E3 97.3 0.00025 5.4E-09 64.0 4.1 79 40-118 14-92 (284)
227 cd06471 ACD_LpsHSP_like Group 97.3 0.0011 2.4E-08 51.6 7.4 74 181-255 3-93 (93)
228 KOG3364 Membrane protein invol 97.3 0.0053 1.1E-07 50.7 11.2 87 34-120 30-121 (149)
229 COG1729 Uncharacterized protei 97.3 0.0028 6.1E-08 58.5 10.6 75 2-76 178-255 (262)
230 PF05843 Suf: Suppressor of fo 97.2 0.0048 1E-07 58.3 12.4 101 4-104 3-104 (280)
231 KOG1130 Predicted G-alpha GTPa 97.2 0.00018 4E-09 69.4 2.7 96 4-99 197-304 (639)
232 COG0457 NrfG FOG: TPR repeat [ 97.2 0.0085 1.8E-07 51.5 13.1 93 11-103 139-235 (291)
233 PRK10941 hypothetical protein; 97.2 0.0042 9.1E-08 58.2 11.0 76 5-80 184-259 (269)
234 KOG2471 TPR repeat-containing 97.2 0.001 2.2E-08 65.7 7.0 111 3-113 241-378 (696)
235 KOG1130 Predicted G-alpha GTPa 97.1 0.0017 3.6E-08 63.0 7.7 96 4-99 237-344 (639)
236 KOG4814 Uncharacterized conser 97.0 0.0053 1.2E-07 62.4 10.9 96 4-99 356-457 (872)
237 COG4700 Uncharacterized protei 97.0 0.021 4.6E-07 50.0 12.7 117 3-120 125-248 (251)
238 KOG4507 Uncharacterized conser 97.0 0.004 8.7E-08 62.7 9.4 104 12-115 617-721 (886)
239 KOG4555 TPR repeat-containing 97.0 0.0039 8.4E-08 51.4 7.6 65 39-103 46-110 (175)
240 PF13181 TPR_8: Tetratricopept 96.9 0.0016 3.5E-08 40.2 4.2 31 37-67 2-32 (34)
241 KOG2796 Uncharacterized conser 96.9 0.012 2.6E-07 54.1 11.3 117 4-120 179-302 (366)
242 KOG2796 Uncharacterized conser 96.9 0.0068 1.5E-07 55.7 9.6 99 6-104 216-320 (366)
243 PF13174 TPR_6: Tetratricopept 96.9 0.0016 3.4E-08 39.8 3.9 31 72-102 2-32 (33)
244 KOG3824 Huntingtin interacting 96.9 0.0031 6.7E-08 59.0 7.4 75 4-78 118-192 (472)
245 PF09613 HrpB1_HrpK: Bacterial 96.9 0.079 1.7E-06 45.4 15.4 106 4-111 12-117 (160)
246 KOG0545 Aryl-hydrocarbon recep 96.9 0.008 1.7E-07 54.7 9.7 72 4-75 232-303 (329)
247 KOG1915 Cell cycle control pro 96.9 0.015 3.2E-07 57.5 12.0 101 4-104 75-175 (677)
248 COG4105 ComL DNA uptake lipopr 96.8 0.059 1.3E-06 49.5 14.9 117 3-119 72-216 (254)
249 PF10300 DUF3808: Protein of u 96.8 0.0077 1.7E-07 61.1 10.1 87 15-101 246-336 (468)
250 PF03704 BTAD: Bacterial trans 96.8 0.011 2.3E-07 49.8 9.4 62 4-65 64-125 (146)
251 PF05843 Suf: Suppressor of fo 96.8 0.025 5.5E-07 53.4 12.6 109 4-112 37-149 (280)
252 PF14853 Fis1_TPR_C: Fis1 C-te 96.7 0.0075 1.6E-07 41.8 6.5 43 37-79 2-44 (53)
253 KOG3081 Vesicle coat complex C 96.7 0.031 6.6E-07 51.6 12.2 79 40-118 173-255 (299)
254 PF10300 DUF3808: Protein of u 96.7 0.014 3.1E-07 59.2 11.3 92 5-96 270-366 (468)
255 COG3071 HemY Uncharacterized e 96.7 0.015 3.2E-07 56.3 10.5 111 6-120 267-377 (400)
256 smart00028 TPR Tetratricopepti 96.7 0.0031 6.8E-08 37.0 3.9 32 71-102 2-33 (34)
257 KOG3824 Huntingtin interacting 96.7 0.0072 1.6E-07 56.6 7.8 75 38-112 118-192 (472)
258 KOG1941 Acetylcholine receptor 96.7 0.0053 1.2E-07 58.7 7.0 97 4-100 124-236 (518)
259 KOG4151 Myosin assembly protei 96.6 0.0083 1.8E-07 62.5 9.0 115 3-117 54-174 (748)
260 KOG2471 TPR repeat-containing 96.6 0.003 6.5E-08 62.4 5.0 77 6-82 287-381 (696)
261 KOG0551 Hsp90 co-chaperone CNS 96.6 0.017 3.7E-07 54.7 9.7 66 2-67 119-184 (390)
262 cd06479 ACD_HspB7_like Alpha c 96.6 0.012 2.6E-07 44.6 7.3 72 184-255 4-81 (81)
263 cd06475 ACD_HspB1_like Alpha c 96.5 0.012 2.6E-07 45.2 7.3 73 181-253 3-84 (86)
264 cd06497 ACD_alphaA-crystallin_ 96.5 0.013 2.8E-07 45.0 7.1 72 184-255 6-86 (86)
265 PF13174 TPR_6: Tetratricopept 96.5 0.0058 1.3E-07 37.2 4.2 31 38-68 2-32 (33)
266 KOG0376 Serine-threonine phosp 96.4 0.0051 1.1E-07 60.8 5.7 78 6-83 42-119 (476)
267 KOG2396 HAT (Half-A-TPR) repea 96.4 0.046 9.9E-07 54.5 12.1 91 20-110 89-180 (568)
268 cd06526 metazoan_ACD Alpha-cry 96.4 0.012 2.7E-07 44.7 6.6 68 188-255 7-83 (83)
269 PF13176 TPR_7: Tetratricopept 96.4 0.0057 1.2E-07 38.6 3.9 28 72-99 1-28 (36)
270 PRK04841 transcriptional regul 96.4 0.037 8.1E-07 60.6 12.9 94 6-99 456-560 (903)
271 KOG2053 Mitochondrial inherita 96.3 0.035 7.6E-07 58.7 11.3 100 5-105 46-145 (932)
272 PRK04841 transcriptional regul 96.3 0.033 7.1E-07 61.1 11.8 97 5-101 494-604 (903)
273 PLN03081 pentatricopeptide (PP 96.3 0.052 1.1E-06 57.9 13.0 91 7-99 467-557 (697)
274 PF09986 DUF2225: Uncharacteri 96.3 0.056 1.2E-06 48.9 11.2 93 12-104 87-199 (214)
275 KOG3081 Vesicle coat complex C 96.3 0.072 1.6E-06 49.2 11.7 94 14-107 185-279 (299)
276 cd06498 ACD_alphaB-crystallin_ 96.3 0.023 4.9E-07 43.5 7.3 72 185-256 4-84 (84)
277 PF04184 ST7: ST7 protein; In 96.2 0.048 1E-06 54.5 11.0 54 8-61 265-320 (539)
278 PF14561 TPR_20: Tetratricopep 96.2 0.051 1.1E-06 42.1 8.9 49 21-69 7-55 (90)
279 PLN03218 maturation of RBCL 1; 96.1 0.16 3.4E-06 56.6 15.8 89 9-97 656-746 (1060)
280 smart00028 TPR Tetratricopepti 96.1 0.0095 2.1E-07 34.8 3.7 31 38-68 3-33 (34)
281 KOG0530 Protein farnesyltransf 96.1 0.16 3.6E-06 46.8 12.8 109 12-120 53-163 (318)
282 cd06470 ACD_IbpA-B_like Alpha- 96.0 0.048 1E-06 42.2 8.3 73 181-255 3-90 (90)
283 PF04184 ST7: ST7 protein; In 96.0 0.065 1.4E-06 53.5 10.8 90 11-102 177-291 (539)
284 cd06478 ACD_HspB4-5-6 Alpha-cr 96.0 0.031 6.8E-07 42.6 6.9 71 185-255 4-83 (83)
285 PF13176 TPR_7: Tetratricopept 96.0 0.015 3.3E-07 36.6 4.3 28 38-65 1-28 (36)
286 KOG1915 Cell cycle control pro 96.0 0.13 2.8E-06 51.2 12.5 106 13-119 377-486 (677)
287 PLN03218 maturation of RBCL 1; 96.0 0.2 4.3E-06 55.9 15.6 88 10-98 550-642 (1060)
288 COG4976 Predicted methyltransf 95.9 0.011 2.4E-07 53.2 4.8 61 45-105 4-64 (287)
289 PRK13184 pknD serine/threonine 95.9 0.076 1.7E-06 57.9 11.9 111 8-119 481-601 (932)
290 PLN03081 pentatricopeptide (PP 95.9 0.05 1.1E-06 58.0 10.5 102 5-107 293-430 (697)
291 KOG2610 Uncharacterized conser 95.8 0.12 2.7E-06 49.2 11.1 101 5-105 106-210 (491)
292 KOG1586 Protein required for f 95.8 0.12 2.6E-06 46.9 10.5 97 8-104 79-188 (288)
293 KOG1586 Protein required for f 95.7 0.32 7E-06 44.2 13.1 114 6-119 117-246 (288)
294 PF10602 RPN7: 26S proteasome 95.7 0.14 3.1E-06 44.8 10.9 97 3-99 37-142 (177)
295 KOG1070 rRNA processing protei 95.7 0.11 2.5E-06 57.4 12.0 107 7-113 1535-1643(1710)
296 COG2912 Uncharacterized conser 95.7 0.066 1.4E-06 49.7 8.9 75 39-113 184-258 (269)
297 KOG1585 Protein required for f 95.7 0.087 1.9E-06 48.1 9.3 96 5-100 113-220 (308)
298 KOG1941 Acetylcholine receptor 95.6 0.063 1.4E-06 51.6 8.7 95 5-99 165-275 (518)
299 PF10579 Rapsyn_N: Rapsyn N-te 95.6 0.11 2.4E-06 38.8 8.2 64 2-65 6-72 (80)
300 PRK10743 heat shock protein Ib 95.6 0.083 1.8E-06 44.3 8.3 74 181-256 37-124 (137)
301 PF02259 FAT: FAT domain; Int 95.5 0.37 8E-06 46.4 13.9 119 2-120 146-308 (352)
302 cd06476 ACD_HspB2_like Alpha c 95.4 0.083 1.8E-06 40.2 7.1 70 186-255 5-83 (83)
303 PF07079 DUF1347: Protein of u 95.4 0.4 8.6E-06 47.6 13.4 70 46-119 472-545 (549)
304 PF14561 TPR_20: Tetratricopep 95.4 0.15 3.2E-06 39.5 8.6 65 55-119 7-73 (90)
305 PF04910 Tcf25: Transcriptiona 95.3 0.27 5.9E-06 48.1 12.5 79 27-105 31-139 (360)
306 KOG1585 Protein required for f 95.3 0.57 1.2E-05 42.9 13.2 102 3-104 32-144 (308)
307 PF13281 DUF4071: Domain of un 95.2 0.89 1.9E-05 44.6 15.3 108 6-113 183-348 (374)
308 COG2912 Uncharacterized conser 95.1 0.12 2.7E-06 47.9 8.8 74 7-80 186-259 (269)
309 PLN03077 Protein ECB2; Provisi 95.1 0.25 5.5E-06 54.0 12.7 108 7-116 594-703 (857)
310 cd06481 ACD_HspB9_like Alpha c 95.0 0.11 2.3E-06 40.0 6.7 68 186-253 5-85 (87)
311 PRK11597 heat shock chaperone 94.9 0.14 3E-06 43.2 7.9 74 181-256 35-122 (142)
312 PLN03077 Protein ECB2; Provisi 94.9 0.27 5.9E-06 53.8 12.4 108 4-113 556-667 (857)
313 TIGR02561 HrpB1_HrpK type III 94.9 0.75 1.6E-05 38.9 12.1 86 4-89 12-97 (153)
314 COG4976 Predicted methyltransf 94.8 0.055 1.2E-06 48.9 5.3 60 10-69 3-62 (287)
315 PF12862 Apc5: Anaphase-promot 94.8 0.22 4.8E-06 38.7 8.3 56 11-66 7-71 (94)
316 KOG1308 Hsp70-interacting prot 94.7 0.0081 1.8E-07 57.1 -0.2 74 47-120 125-198 (377)
317 KOG2610 Uncharacterized conser 94.6 0.21 4.6E-06 47.7 8.9 85 11-95 146-234 (491)
318 KOG3364 Membrane protein invol 94.4 0.49 1.1E-05 39.4 9.4 75 4-78 34-113 (149)
319 PF09613 HrpB1_HrpK: Bacterial 94.3 0.65 1.4E-05 39.9 10.4 84 37-120 11-94 (160)
320 cd06482 ACD_HspB10 Alpha cryst 94.2 0.21 4.6E-06 38.3 6.8 66 186-251 6-83 (87)
321 PF08631 SPO22: Meiosis protei 94.1 2.2 4.8E-05 40.1 15.0 100 2-101 35-152 (278)
322 PF02259 FAT: FAT domain; Int 94.0 1 2.2E-05 43.2 12.9 99 4-102 186-341 (352)
323 COG5191 Uncharacterized conser 93.8 0.15 3.3E-06 48.1 6.1 86 25-110 96-182 (435)
324 PF13374 TPR_10: Tetratricopep 93.8 0.15 3.3E-06 32.4 4.6 29 3-31 3-31 (42)
325 PF13374 TPR_10: Tetratricopep 93.8 0.16 3.4E-06 32.3 4.7 28 38-65 4-31 (42)
326 PF12862 Apc5: Anaphase-promot 93.7 0.64 1.4E-05 36.1 8.8 57 45-101 7-72 (94)
327 KOG4507 Uncharacterized conser 93.4 0.38 8.1E-06 49.1 8.5 75 5-79 645-719 (886)
328 COG3914 Spy Predicted O-linked 93.3 1.1 2.4E-05 45.8 11.7 102 9-110 74-182 (620)
329 KOG1070 rRNA processing protei 93.3 1.3 2.8E-05 49.6 12.9 98 4-101 1566-1665(1710)
330 PF08190 PIH1: pre-RNA process 93.2 0.4 8.8E-06 46.1 8.5 65 186-253 259-326 (328)
331 COG0790 FOG: TPR repeat, SEL1 93.2 3.3 7.2E-05 38.8 14.6 97 3-101 110-222 (292)
332 cd06477 ACD_HspB3_Like Alpha c 93.0 0.65 1.4E-05 35.3 7.5 68 185-252 4-80 (83)
333 KOG1550 Extracellular protein 93.0 1.6 3.6E-05 45.3 13.0 92 5-100 291-394 (552)
334 PF14863 Alkyl_sulf_dimr: Alky 93.0 0.38 8.2E-06 40.5 6.8 48 3-50 71-118 (141)
335 KOG2047 mRNA splicing factor [ 92.7 2.4 5.2E-05 44.0 13.1 117 2-118 425-559 (835)
336 KOG4814 Uncharacterized conser 92.5 0.54 1.2E-05 48.4 8.2 73 37-109 355-433 (872)
337 PF09986 DUF2225: Uncharacteri 92.4 1.5 3.2E-05 39.7 10.3 77 3-79 119-209 (214)
338 KOG3617 WD40 and TPR repeat-co 92.3 0.97 2.1E-05 48.0 9.9 96 4-99 860-996 (1416)
339 KOG1550 Extracellular protein 92.3 2 4.3E-05 44.7 12.5 105 5-115 247-371 (552)
340 PF08424 NRDE-2: NRDE-2, neces 92.1 3 6.5E-05 40.2 12.7 84 23-106 6-101 (321)
341 KOG2047 mRNA splicing factor [ 92.0 2.5 5.5E-05 43.8 12.3 93 9-101 484-581 (835)
342 PF10516 SHNi-TPR: SHNi-TPR; 91.8 0.26 5.7E-06 31.5 3.4 29 71-99 2-30 (38)
343 PF07079 DUF1347: Protein of u 91.6 1 2.2E-05 44.8 8.7 58 4-62 464-521 (549)
344 PRK15180 Vi polysaccharide bio 91.6 1.6 3.6E-05 43.6 10.2 95 10-104 297-391 (831)
345 COG2976 Uncharacterized protei 91.5 3.5 7.6E-05 36.6 11.1 59 38-96 91-152 (207)
346 PF04910 Tcf25: Transcriptiona 91.5 1.9 4.2E-05 42.2 10.7 99 4-102 105-225 (360)
347 KOG0530 Protein farnesyltransf 91.4 1.9 4.1E-05 40.0 9.7 90 16-105 92-182 (318)
348 PF12968 DUF3856: Domain of Un 91.3 3.8 8.3E-05 33.4 10.2 80 37-116 8-106 (144)
349 COG3629 DnrI DNA-binding trans 91.2 3.2 6.9E-05 39.1 11.4 64 36-99 153-216 (280)
350 PF13281 DUF4071: Domain of un 91.2 4.8 0.0001 39.5 13.0 97 7-103 146-259 (374)
351 TIGR02561 HrpB1_HrpK type III 90.9 2.7 6E-05 35.6 9.5 82 39-120 13-94 (153)
352 COG3898 Uncharacterized membra 90.8 3.1 6.8E-05 40.8 11.0 91 6-98 124-216 (531)
353 PF07720 TPR_3: Tetratricopept 90.5 0.8 1.7E-05 28.9 4.6 20 73-92 4-23 (36)
354 PF10373 EST1_DNA_bind: Est1 D 90.4 1.2 2.6E-05 41.3 8.0 59 55-113 1-59 (278)
355 PF05455 GvpH: GvpH; InterPro 90.3 1.8 3.8E-05 37.7 8.1 71 185-258 98-170 (177)
356 KOG2581 26S proteasome regulat 90.3 4.8 0.0001 39.6 11.8 122 4-125 171-304 (493)
357 PF07721 TPR_4: Tetratricopept 90.2 0.39 8.5E-06 27.7 2.8 24 71-94 2-25 (26)
358 KOG0529 Protein geranylgeranyl 89.8 4.1 8.8E-05 40.1 11.0 105 13-117 86-196 (421)
359 PF10516 SHNi-TPR: SHNi-TPR; 89.8 0.66 1.4E-05 29.7 3.9 28 38-65 3-30 (38)
360 KOG2422 Uncharacterized conser 89.7 7.2 0.00016 40.0 12.9 94 15-108 251-381 (665)
361 PF07720 TPR_3: Tetratricopept 89.4 1.3 2.9E-05 27.9 5.0 21 38-58 3-23 (36)
362 KOG2561 Adaptor protein NUB1, 89.4 1.3 2.7E-05 43.8 7.2 98 1-98 162-295 (568)
363 KOG1258 mRNA processing protei 89.4 8.4 0.00018 39.7 13.3 113 5-117 300-413 (577)
364 PF09670 Cas_Cas02710: CRISPR- 89.2 7 0.00015 38.6 12.6 62 3-64 132-197 (379)
365 PF06957 COPI_C: Coatomer (COP 89.2 3.5 7.5E-05 41.1 10.3 102 4-105 206-335 (422)
366 COG3914 Spy Predicted O-linked 89.2 4.8 0.0001 41.4 11.3 97 14-110 42-142 (620)
367 PF08631 SPO22: Meiosis protei 88.9 8.5 0.00018 36.1 12.5 96 12-107 3-124 (278)
368 PF04781 DUF627: Protein of un 88.9 3.1 6.7E-05 33.4 7.9 69 42-110 2-84 (111)
369 KOG0546 HSP90 co-chaperone CPR 88.7 0.33 7E-06 46.6 2.7 80 7-86 280-359 (372)
370 COG3629 DnrI DNA-binding trans 88.7 2.8 6E-05 39.5 8.8 63 3-65 154-216 (280)
371 PF10345 Cohesin_load: Cohesin 88.7 15 0.00032 38.8 15.3 108 2-110 59-181 (608)
372 PF10373 EST1_DNA_bind: Est1 D 88.5 5.5 0.00012 36.9 10.9 62 21-82 1-62 (278)
373 PF10255 Paf67: RNA polymerase 88.4 2.3 4.9E-05 42.2 8.4 97 5-102 125-231 (404)
374 COG0790 FOG: TPR repeat, SEL1 88.3 22 0.00047 33.2 15.0 82 18-104 171-271 (292)
375 PF08424 NRDE-2: NRDE-2, neces 88.2 7.8 0.00017 37.3 12.0 82 18-99 47-131 (321)
376 cd06480 ACD_HspB8_like Alpha-c 88.1 3.1 6.8E-05 32.2 7.4 64 189-252 16-88 (91)
377 cd02682 MIT_AAA_Arch MIT: doma 88.0 2.1 4.6E-05 31.8 6.1 30 2-31 6-35 (75)
378 COG3898 Uncharacterized membra 87.9 14 0.00031 36.4 13.0 93 11-104 197-297 (531)
379 PHA02537 M terminase endonucle 87.8 1 2.3E-05 41.0 5.2 108 12-120 93-227 (230)
380 COG4649 Uncharacterized protei 87.7 19 0.0004 31.6 12.5 99 6-105 98-201 (221)
381 KOG0529 Protein geranylgeranyl 87.6 12 0.00027 36.9 12.7 110 10-119 36-160 (421)
382 PRK13184 pknD serine/threonine 87.4 4.7 0.0001 44.4 10.8 89 17-106 534-627 (932)
383 PF10602 RPN7: 26S proteasome 86.9 6.4 0.00014 34.4 9.6 66 36-101 36-104 (177)
384 KOG2396 HAT (Half-A-TPR) repea 86.8 4.9 0.00011 40.6 9.6 62 13-74 116-178 (568)
385 KOG1839 Uncharacterized protei 85.8 2.1 4.6E-05 47.7 7.1 99 2-100 973-1087(1236)
386 COG4455 ImpE Protein of avirul 85.8 5.4 0.00012 36.1 8.4 59 10-68 9-67 (273)
387 KOG2300 Uncharacterized conser 85.3 16 0.00034 37.0 12.1 116 2-120 7-136 (629)
388 KOG1839 Uncharacterized protei 85.0 1.4 3E-05 49.0 5.3 98 2-99 932-1044(1236)
389 PF11817 Foie-gras_1: Foie gra 84.8 6.6 0.00014 36.2 9.1 76 20-95 156-243 (247)
390 COG5191 Uncharacterized conser 84.6 1.7 3.7E-05 41.2 5.0 70 6-75 111-181 (435)
391 PF07721 TPR_4: Tetratricopept 84.6 1.2 2.7E-05 25.5 2.7 23 38-60 3-25 (26)
392 cd02683 MIT_1 MIT: domain cont 84.5 2.5 5.5E-05 31.6 5.0 30 2-31 6-35 (77)
393 KOG0686 COP9 signalosome, subu 84.3 7.3 0.00016 38.4 9.2 94 4-97 152-256 (466)
394 KOG2300 Uncharacterized conser 84.2 21 0.00045 36.2 12.4 91 6-100 371-475 (629)
395 PRK15180 Vi polysaccharide bio 84.1 2.8 6.1E-05 42.1 6.4 95 8-102 329-423 (831)
396 PF10255 Paf67: RNA polymerase 84.0 1.7 3.6E-05 43.2 4.9 60 39-99 125-193 (404)
397 COG3118 Thioredoxin domain-con 84.0 7.7 0.00017 36.6 9.0 72 36-111 134-205 (304)
398 KOG3617 WD40 and TPR repeat-co 83.8 4.6 0.0001 43.2 8.1 79 9-97 807-885 (1416)
399 COG4941 Predicted RNA polymera 83.5 8 0.00017 37.2 9.0 96 16-112 310-407 (415)
400 PF11817 Foie-gras_1: Foie gra 83.5 5.5 0.00012 36.8 8.0 59 5-63 181-245 (247)
401 KOG3807 Predicted membrane pro 83.3 25 0.00054 34.0 12.1 91 9-101 191-306 (556)
402 cd02682 MIT_AAA_Arch MIT: doma 83.2 5.9 0.00013 29.5 6.4 47 73-119 9-62 (75)
403 PF14863 Alkyl_sulf_dimr: Alky 83.0 5 0.00011 33.8 6.7 49 37-85 71-119 (141)
404 cd02681 MIT_calpain7_1 MIT: do 83.0 2.2 4.7E-05 31.9 4.1 30 2-31 6-35 (76)
405 PF11207 DUF2989: Protein of u 82.9 6.1 0.00013 35.3 7.5 55 35-90 140-198 (203)
406 PF10579 Rapsyn_N: Rapsyn N-te 82.7 9.8 0.00021 28.6 7.4 57 39-95 9-68 (80)
407 PF04212 MIT: MIT (microtubule 82.4 3 6.6E-05 30.2 4.7 30 2-31 5-34 (69)
408 TIGR03504 FimV_Cterm FimV C-te 82.2 4.7 0.0001 26.6 5.0 25 74-98 3-27 (44)
409 COG3947 Response regulator con 82.1 5.4 0.00012 37.6 7.1 59 38-96 281-339 (361)
410 KOG3783 Uncharacterized conser 81.5 14 0.00031 37.7 10.4 84 37-120 450-541 (546)
411 PF04053 Coatomer_WDAD: Coatom 81.4 14 0.00031 37.2 10.6 89 9-99 268-376 (443)
412 KOG1914 mRNA cleavage and poly 81.1 8.4 0.00018 39.3 8.6 73 26-99 10-82 (656)
413 KOG2041 WD40 repeat protein [G 80.9 6.9 0.00015 41.1 8.0 82 2-95 796-877 (1189)
414 smart00386 HAT HAT (Half-A-TPR 80.7 4.5 9.7E-05 23.6 4.4 29 16-44 1-29 (33)
415 COG3947 Response regulator con 80.1 7.2 0.00016 36.9 7.2 59 5-63 282-340 (361)
416 KOG1310 WD40 repeat protein [G 80.1 5.6 0.00012 40.5 6.9 73 50-122 388-463 (758)
417 cd02680 MIT_calpain7_2 MIT: do 79.7 3.2 6.9E-05 30.9 3.9 29 3-31 7-35 (75)
418 KOG1924 RhoA GTPase effector D 79.3 44 0.00094 35.8 13.1 23 9-31 372-394 (1102)
419 PF11207 DUF2989: Protein of u 79.0 8.7 0.00019 34.3 7.2 47 10-56 148-198 (203)
420 cd02678 MIT_VPS4 MIT: domain c 78.7 4.3 9.4E-05 30.0 4.5 30 2-31 6-35 (75)
421 TIGR02710 CRISPR-associated pr 78.7 33 0.00072 33.8 11.7 55 6-60 134-195 (380)
422 cd02684 MIT_2 MIT: domain cont 78.7 6.2 0.00013 29.3 5.3 30 2-31 6-35 (75)
423 KOG0985 Vesicle coat protein c 78.4 6 0.00013 43.3 6.9 100 4-111 1196-1320(1666)
424 smart00745 MIT Microtubule Int 78.3 7.1 0.00015 28.8 5.6 30 2-31 8-37 (77)
425 cd02656 MIT MIT: domain contai 78.2 6.8 0.00015 28.8 5.5 30 2-31 6-35 (75)
426 KOG4563 Cell cycle-regulated h 78.1 4.9 0.00011 38.9 5.6 29 3-31 42-70 (400)
427 PF15015 NYD-SP12_N: Spermatog 77.9 5.2 0.00011 39.6 5.8 55 8-62 234-288 (569)
428 cd02677 MIT_SNX15 MIT: domain 77.9 11 0.00025 27.9 6.5 30 2-31 6-35 (75)
429 COG2909 MalT ATP-dependent tra 77.8 28 0.0006 37.7 11.6 96 6-101 419-528 (894)
430 PF07219 HemY_N: HemY protein 77.4 11 0.00024 29.9 6.9 47 4-50 61-107 (108)
431 PF11846 DUF3366: Domain of un 76.7 13 0.00028 32.7 7.8 50 52-102 127-176 (193)
432 PF10345 Cohesin_load: Cohesin 75.4 27 0.00059 36.7 11.0 90 5-94 304-428 (608)
433 PF09205 DUF1955: Domain of un 74.9 19 0.00042 30.1 7.5 49 50-98 100-148 (161)
434 PF10952 DUF2753: Protein of u 73.4 20 0.00043 29.5 7.1 60 4-63 3-77 (140)
435 COG4455 ImpE Protein of avirul 72.9 48 0.001 30.2 10.1 58 45-102 10-67 (273)
436 COG4649 Uncharacterized protei 72.7 22 0.00047 31.2 7.7 77 6-83 136-213 (221)
437 KOG0292 Vesicle coat complex C 72.3 49 0.0011 36.0 11.5 105 5-109 994-1123(1202)
438 PF13226 DUF4034: Domain of un 72.2 58 0.0013 30.7 11.1 112 8-119 6-148 (277)
439 KOG2114 Vacuolar assembly/sort 71.5 14 0.00031 39.6 7.5 29 3-31 369-397 (933)
440 PRK15490 Vi polysaccharide bio 71.3 53 0.0012 34.2 11.5 82 11-94 17-98 (578)
441 TIGR03504 FimV_Cterm FimV C-te 71.2 7.8 0.00017 25.6 3.7 25 40-64 3-27 (44)
442 KOG2422 Uncharacterized conser 70.5 31 0.00068 35.6 9.4 98 5-102 345-451 (665)
443 smart00386 HAT HAT (Half-A-TPR 70.2 14 0.00029 21.4 4.5 28 51-78 2-29 (33)
444 KOG0276 Vesicle coat complex C 70.1 21 0.00046 37.0 8.1 67 24-99 629-695 (794)
445 PF09477 Type_III_YscG: Bacter 69.9 46 0.00099 26.7 8.3 86 5-95 9-94 (116)
446 PF12739 TRAPPC-Trs85: ER-Golg 68.3 48 0.001 33.1 10.4 96 4-99 210-329 (414)
447 PF04053 Coatomer_WDAD: Coatom 68.2 50 0.0011 33.3 10.5 82 9-90 302-409 (443)
448 PF09477 Type_III_YscG: Bacter 66.0 68 0.0015 25.7 9.8 76 39-119 9-84 (116)
449 KOG0890 Protein kinase of the 64.3 83 0.0018 38.0 12.2 99 2-102 1670-1787(2382)
450 PF04190 DUF410: Protein of un 64.2 78 0.0017 29.4 10.4 92 4-95 12-115 (260)
451 PF01239 PPTA: Protein prenylt 63.4 24 0.00053 20.9 4.6 28 21-48 2-29 (31)
452 KOG1914 mRNA cleavage and poly 63.3 90 0.0019 32.2 10.9 91 11-101 410-503 (656)
453 KOG0889 Histone acetyltransfer 63.0 91 0.002 39.2 12.4 80 36-116 2812-2899(3550)
454 COG2015 Alkyl sulfatase and re 62.4 18 0.0004 36.5 5.9 53 37-89 453-505 (655)
455 TIGR02508 type_III_yscG type I 62.1 37 0.0008 26.9 6.3 40 74-118 43-82 (115)
456 KOG3807 Predicted membrane pro 61.7 83 0.0018 30.5 9.8 61 39-99 278-340 (556)
457 cd02683 MIT_1 MIT: domain cont 61.4 44 0.00094 24.9 6.6 21 41-61 11-31 (77)
458 KOG4459 Membrane-associated pr 60.7 41 0.0009 33.7 8.0 117 4-120 33-183 (471)
459 COG5107 RNA14 Pre-mRNA 3'-end 59.4 1.5E+02 0.0033 30.0 11.5 93 11-103 441-535 (660)
460 COG4856 Uncharacterized protei 59.2 26 0.00056 34.2 6.1 74 185-259 65-138 (403)
461 PF04212 MIT: MIT (microtubule 58.2 60 0.0013 23.2 6.8 15 82-96 17-31 (69)
462 COG5159 RPN6 26S proteasome re 57.9 76 0.0017 30.2 8.7 48 6-53 7-62 (421)
463 PF13226 DUF4034: Domain of un 57.7 62 0.0013 30.5 8.4 71 20-90 61-153 (277)
464 cd02680 MIT_calpain7_2 MIT: do 57.7 20 0.00043 26.7 4.1 19 48-66 18-36 (75)
465 COG2909 MalT ATP-dependent tra 57.3 1.3E+02 0.0028 32.9 11.4 81 5-85 461-552 (894)
466 KOG1258 mRNA processing protei 57.2 86 0.0019 32.5 9.8 83 19-101 62-145 (577)
467 PF12854 PPR_1: PPR repeat 57.1 25 0.00055 21.4 3.9 26 36-61 7-32 (34)
468 PF08238 Sel1: Sel1 repeat; I 56.5 26 0.00055 21.4 4.0 30 70-99 1-37 (39)
469 smart00299 CLH Clathrin heavy 56.0 1.1E+02 0.0024 24.9 9.1 80 12-93 17-105 (140)
470 PF11846 DUF3366: Domain of un 55.5 45 0.00098 29.2 6.9 48 19-67 128-175 (193)
471 PF14098 SSPI: Small, acid-sol 55.5 12 0.00026 27.0 2.4 26 320-345 37-62 (65)
472 COG5107 RNA14 Pre-mRNA 3'-end 55.5 31 0.00068 34.7 6.1 70 25-97 291-360 (660)
473 PF05053 Menin: Menin; InterP 55.3 28 0.00061 35.8 6.0 73 16-98 274-346 (618)
474 cd02679 MIT_spastin MIT: domai 54.6 23 0.00051 26.6 4.1 16 17-32 4-19 (79)
475 KOG3783 Uncharacterized conser 53.9 68 0.0015 32.9 8.4 92 20-111 251-344 (546)
476 KOG0739 AAA+-type ATPase [Post 53.6 58 0.0013 31.2 7.3 17 14-30 22-38 (439)
477 smart00671 SEL1 Sel1-like repe 52.4 33 0.00071 20.4 4.0 28 71-98 2-33 (36)
478 KOG0276 Vesicle coat complex C 52.2 74 0.0016 33.3 8.3 83 11-98 646-749 (794)
479 cd02678 MIT_VPS4 MIT: domain c 51.9 81 0.0018 23.1 6.7 15 81-95 17-31 (75)
480 TIGR03092 SASP_sspI small, aci 51.8 13 0.00028 26.6 2.2 25 320-344 36-60 (65)
481 KOG3616 Selective LIM binding 51.6 77 0.0017 34.0 8.4 91 7-97 666-792 (1636)
482 smart00745 MIT Microtubule Int 50.1 52 0.0011 24.0 5.4 16 48-63 20-35 (77)
483 KOG4151 Myosin assembly protei 50.0 18 0.00039 38.5 3.8 71 10-80 101-171 (748)
484 cd02656 MIT MIT: domain contai 49.9 54 0.0012 23.9 5.5 14 50-63 20-33 (75)
485 COG3014 Uncharacterized protei 49.8 1.4E+02 0.003 29.1 9.2 112 6-118 62-241 (449)
486 KOG4563 Cell cycle-regulated h 49.5 29 0.00063 33.8 4.8 58 38-95 43-108 (400)
487 KOG0985 Vesicle coat protein c 49.4 1.2E+02 0.0026 33.9 9.7 87 8-99 1054-1162(1666)
488 PF08311 Mad3_BUB1_I: Mad3/BUB 49.3 1.4E+02 0.0031 24.3 10.0 80 16-97 40-126 (126)
489 COG5600 Transcription-associat 49.3 90 0.0019 30.7 8.0 88 14-102 142-252 (413)
490 cd02681 MIT_calpain7_1 MIT: do 49.3 1.1E+02 0.0023 22.8 7.0 25 39-63 9-33 (76)
491 PF15469 Sec5: Exocyst complex 49.2 1.6E+02 0.0035 25.4 9.3 20 47-66 97-116 (182)
492 COG4941 Predicted RNA polymera 48.4 91 0.002 30.3 7.8 71 8-78 335-407 (415)
493 PF09797 NatB_MDM20: N-acetylt 48.3 1.2E+02 0.0026 29.5 9.2 46 50-95 197-242 (365)
494 KOG1463 26S proteasome regulat 47.2 55 0.0012 31.7 6.2 93 6-98 132-237 (411)
495 PF07163 Pex26: Pex26 protein; 47.1 1.9E+02 0.0042 27.4 9.6 114 5-119 38-166 (309)
496 PF03745 DUF309: Domain of unk 47.1 1E+02 0.0022 21.9 6.9 52 6-57 3-60 (62)
497 KOG2581 26S proteasome regulat 46.8 2.3E+02 0.0049 28.4 10.4 31 4-34 249-279 (493)
498 KOG1497 COP9 signalosome, subu 46.7 1.7E+02 0.0036 28.3 9.2 83 36-119 103-195 (399)
499 PRK02955 small acid-soluble sp 46.3 16 0.00036 26.4 2.0 25 320-344 39-63 (68)
500 COG5159 RPN6 26S proteasome re 45.8 1.7E+02 0.0037 27.9 9.1 94 8-101 131-237 (421)
No 1
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=100.00 E-value=1.2e-89 Score=667.92 Aligned_cols=356 Identities=73% Similarity=1.130 Sum_probs=305.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 016973 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (379)
Q Consensus 1 ~A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~ 80 (379)
||..|..+|+.+|..|+|++|+.+|+++|.++|+++.+|++||.||+++|++++|+.++.+|+.++|.++.+|+++|.+|
T Consensus 1 ~~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~ 80 (356)
T PLN03088 1 MAKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTAC 80 (356)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcccCCCCCCCCCCccccCCCCCCCCCCCCCccccccccc
Q 016973 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDV 160 (379)
Q Consensus 81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~~~~~~~~~~~~~ 160 (379)
+.+|+|++|+.+|+++++++|++..+..|+..|...+.......+...+. .+. . +.. .++ . ..
T Consensus 81 ~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~~~~~~~~~~~--~~~----~-~~~----~~~----~--~~ 143 (356)
T PLN03088 81 MKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEEEKDLVQPVPS--DLP----S-SVT----APP----V--EE 143 (356)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhhccccccccc--ccc----c-ccc----ccc----c--cc
Confidence 99999999999999999999999999999999999997653332211110 000 0 000 000 0 00
Q ss_pred ccccccCCCCCcccccccccccccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcCCCceeeeccccccccccCcc
Q 016973 161 SNEAAMAAPARPKYRFQILMHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKC 240 (379)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~~s 240 (379)
....+..++..+++| |+|||++++|+|+||+||+.++++.|+|++++|+|+|..+++..|.|.++||++|+|++|
T Consensus 144 ~~~~~~~~~~~~~~r-----~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s 218 (356)
T PLN03088 144 ADATPVVPPSKPKYR-----HEFYQKPEEVVVTVFAKGVPAENVNVDFGEQILSVVIEVPGEDAYHLQPRLFGKIIPDKC 218 (356)
T ss_pred cccCCCCCCCCCccc-----cceeecCCEEEEEEEecCCChHHcEEEeecCEEEEEEecCCCcceeeccccccccccccc
Confidence 011112233456789 999999999999999999999999999999999999988888899999999999999999
Q ss_pred eEEEeCcEEEEEEeecCCCCCCccccCCCccCCCccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHhhhhhhhcccchHH
Q 016973 241 RYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAA 320 (379)
Q Consensus 241 ~~~v~~~kiei~L~K~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~~~~dWdk~~~~~~~~~~~e~~e~~~~ 320 (379)
+|+|+++||||+|+|+++.+|++|+..+............ .....|+||||+++++|||||+.++++|+++|+++|+++
T Consensus 219 ~~~v~~~Kiei~l~K~~~~~W~~L~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~dWdk~~~~~~~e~~~e~~~g~~~ 297 (356)
T PLN03088 219 KYEVLSTKIEIRLAKAEPITWASLEYGKGPAVLPKPNVSS-EVSQRPAYPSSKKKKDDWDKLEAEVKKEEKDEKLDGDAA 297 (356)
T ss_pred EEEEecceEEEEEecCCCCCccccccCCccccccCCCCCc-CcccCCCCCCCCCCCCChhhhhhhhhhhhhccccccchH
Confidence 9999999999999999999999999876443222111111 124468999998778899999999988888888899999
Q ss_pred HHHHHHHHhcCCCHHHHHHhhhhhhccCCeeeecccccccCcccccCCCCCccccccCC
Q 016973 321 LNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWEY 379 (379)
Q Consensus 321 l~~~f~~iY~~~d~d~kram~Ks~~eS~gt~lstnw~~v~~~~~~~~~p~g~~~k~~~~ 379 (379)
||+||||||+||||||||||||||+|||||||||||+|||+|+||++||+|||+|||++
T Consensus 298 ~~~~f~~iY~~~d~d~rram~KSf~eS~gt~lstnw~~v~~~~~e~~pp~g~e~k~~~~ 356 (356)
T PLN03088 298 LNKFFREIYQNADEDTRRAMMKSFVESNGTVLSTNWKEVGSKKIEGSPPDGMELKKWEY 356 (356)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCeEEeccHHHhcCCccccCCCCCCccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999985
No 2
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.3e-70 Score=456.74 Aligned_cols=195 Identities=59% Similarity=0.944 Sum_probs=175.4
Q ss_pred cccccccccccccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcCCCceeeeccccccccccCcceEEEeCcEEEE
Q 016973 172 PKYRFQILMHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEI 251 (379)
Q Consensus 172 ~~~~~~~~~~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~kiei 251 (379)
+++| |||||+.+.|+|+||.+|+..+||.|.|+++.|++.+..++|..|.|.+.|||+|+|+.|+|+++++||||
T Consensus 2 ~k~r-----~DwyQt~~~vvIti~~k~v~~~~v~v~~s~~~l~~~~~~~~g~~~~l~~~L~~~I~pe~~s~k~~stKVEI 76 (196)
T KOG1309|consen 2 MKIR-----HDWYQTETSVVITIFAKNVPKEDVNVEISENTLSIVIQLPSGSEYNLQLKLYHEIIPEKSSFKVFSTKVEI 76 (196)
T ss_pred Cccc-----ceeecCCceEEEEEEecCCCccceeEEeecceEEEEEecCCchhhhhhHHhcccccccceeeEeeeeeEEE
Confidence 4677 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCCccccCCCccCCCccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHhhhhhhhcccchHHHHHHHHHHhcC
Q 016973 252 RLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYAD 331 (379)
Q Consensus 252 ~L~K~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~~~~dWdk~~~~~~~~~~~e~~e~~~~l~~~f~~iY~~ 331 (379)
+|.|.+..+|..|+......+.+.... +....+||+++. ++|||+++.+.+++|++++.| ||+||+|||+||++
T Consensus 77 ~L~K~~~irW~~Le~g~~~~~~~~~~v----s~~~s~~Pssk~-~kdWdkl~~e~~~eEe~e~l~-dAAl~~lF~kiY~~ 150 (196)
T KOG1309|consen 77 TLAKAEIIRWESLEKGKGSAVAPKPNV----SSTASSYPSSKP-AKDWDKLEKEEKKEEEDEKLE-DAALNKLFQKIYSD 150 (196)
T ss_pred EeccccchhhhhhhcccCccccccccc----ccccccCCCCCc-ccCHHHHHHHhhhhhhccchh-HHHHHHHHHHHHhc
Confidence 999998999999996322221111111 123348999877 889999999999888888887 89999999999999
Q ss_pred CCHHHHHHhhhhhhccCCeeeecccccccCcccccCCCCCcccccc
Q 016973 332 ADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKW 377 (379)
Q Consensus 332 ~d~d~kram~Ks~~eS~gt~lstnw~~v~~~~~~~~~p~g~~~k~~ 377 (379)
|||||||||||||+|||||||||||+|||+|+||++||+|||+|+|
T Consensus 151 addDvrRAM~KSf~ESnGTvLSTnW~eVg~kkve~~PP~gmE~Kk~ 196 (196)
T KOG1309|consen 151 ADDDVRRAMMKSFSESNGTVLSTNWSEVGKKKVETKPPDGMEPKKW 196 (196)
T ss_pred CCHHHHHHHHhhhhhcCCeEEeccHHHhccceeeecCCCCCCcCcC
Confidence 9999999999999999999999999999999999999999999999
No 3
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=100.00 E-value=3.2e-54 Score=382.58 Aligned_cols=347 Identities=24% Similarity=0.354 Sum_probs=250.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----------cCHHHHHHHHHHHHHhCC------CCHHH
Q 016973 9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKL----------QNFTEAVADANRAIELEP------SMSKA 72 (379)
Q Consensus 9 g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~l----------g~~~eAl~~~~~Al~l~p------~~~~a 72 (379)
|..++...+.-.|+.+|...+.-.|.|..++...+.|+.++ -....|++.+..|+.+.. ...-+
T Consensus 2 ~~~L~D~~e~L~~L~~~~~~~~~~~~NL~~l~~~a~~lEk~~~~Fs~~~s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~ 81 (368)
T COG5091 2 YKALYDEKEPLKALHLYDEILKGSPTNLTALIFKAACLEKLYFGFSDWHSDATMENAKELLDKALMTAEGRGDRSKIGLV 81 (368)
T ss_pred ccchhcccchHHHhhhhhhhhccCCcceeEEeehhhhHHHHHhhhhhhhcccChhhHHHHHHHHHHhhhccCCcceeeee
Confidence 34567777888899999999999999976666666666554 346789999999997753 35678
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcccCCCCCCCCCCccccCCCCCCCCCCCCCc
Q 016973 73 YWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPLETGPTNVVSTNNVQPATNISSTE 152 (379)
Q Consensus 73 ~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~~~~~ 152 (379)
.+|++++||.+++|+.|..+|..|+.+. -+..+..|-.++...|.............+..|...+.. ..+.+..+
T Consensus 82 ~~~~~v~~~~ik~Ye~a~~~F~~A~~~~-~~d~L~~We~rLet~L~~~~kkQ~~~Tnk~~I~~vEs~e--~~GD~~~~-- 156 (368)
T COG5091 82 NFRYFVHFFNIKDYELAQSYFKKAKNLY-VDDTLPLWEDRLETKLNKKNKKQKDSTNKHTIKPVESIE--NRGDNNSS-- 156 (368)
T ss_pred hhhhHHHhhhHHHHHHHHHHHHHHHHHh-hcccchHHHHHHHHHHhHhhHhhccccCCCCCCchhhhh--ccCccccc--
Confidence 9999999999999999999999999994 445577788888887777633222222111111100000 11111110
Q ss_pred ccccccccccccccCCC---CCcccccccccccccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcCCCce-eeec
Q 016973 153 DVETVMDVSNEAAMAAP---ARPKYRFQILMHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEA-YHFQ 228 (379)
Q Consensus 153 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~-~~~~ 228 (379)
..|.+|......| ..-+++ |+|.||...+.|.||.+-+..++|.+-++.+.|+|+++...+.. +.+.
T Consensus 157 ----~S~~sP~~~~~~~qE~~~~~i~-----yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~NTL~I~~q~~~~~~~~~~~ 227 (368)
T COG5091 157 ----HSPISPLKIETAPQESPKMEIA-----YDFSETSDTAIIFIYRPPVGDEQVSPVLEGNTLSISYQPRRLRLWNDIT 227 (368)
T ss_pred ----cCCCCccccccCcccCccceee-----eeccccceeEEEEEecCCCCccccceeecCCcceeeeeccccchHHHhh
Confidence 1123331111122 222455 77777777777777778888899999999999999998776544 4456
Q ss_pred cccccccccCcceEEEeCcEEEEEEeecCCCCCCccccCCCccCCCccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHhh
Q 016973 229 PRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKK 308 (379)
Q Consensus 229 ~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~~~~dWdk~~~~~~~ 308 (379)
+.||++|.|+.+++++.+.++||.|+|.+..+|..|++....... ...........+-|+|+.+++||+++..+.+
T Consensus 228 ~~Ly~ev~P~~~s~k~fsK~~e~~l~KV~~v~W~~l~~~pa~~S~---~l~~e~~N~~SAt~~s~~k~~Dw~~l~~~~~- 303 (368)
T COG5091 228 ISLYKEVYPDIRSIKSFSKRVEVHLRKVEMVRWGGLNGRPADESS---RLSDEGKNSDSATPKSSKKQDDWKELMVEDS- 303 (368)
T ss_pred hhhhhhcCcchhhhhhcchhheehhhhhhhhhhcccccCcccccc---ccccccccccccCCccccccccHHHhhhhhc-
Confidence 699999999999999999999999999999999999976322100 0000000112344777888999999987522
Q ss_pred hhhhhcccchHHHHHHHHHHhcCCCHHHHHHhhhhhhccCCeeeecccccccCcccccCCCCCcccccc
Q 016973 309 EEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKW 377 (379)
Q Consensus 309 ~~~~e~~e~~~~l~~~f~~iY~~~d~d~kram~Ks~~eS~gt~lstnw~~v~~~~~~~~~p~g~~~k~~ 377 (379)
.++| ++ ..+++|||+||++|||||||||||||+|||||+|||||++|++|+|+++||+|||+|+|
T Consensus 304 -~dEe--~p-s~~dslFqklY~~addDtrRAMmKSf~ESnGTaLSTdW~dVkskt~~t~pPeGMEPK~~ 368 (368)
T COG5091 304 -GDEE--NP-SVMDSLFQKLYQRADDDTRRAMMKSFYESNGTALSTDWDDVKSKTITTEPPEGMEPKHW 368 (368)
T ss_pred -cccc--Cc-hHHHHHHHHHHhcCCchHHHHHHHHHhhcCCceecccHHHhhcCceecCCCCCCCCCCC
Confidence 1222 22 34788999999999999999999999999999999999999999999999999999999
No 4
>PF05002 SGS: SGS domain ; InterPro: IPR007699 This domain was thought to be unique to the SGT1-like proteins, but is also found in calcyclin binding proteins. Sgt1p is a highly conserved eukaryotic protein that is required for both SCF (Skp1p/Cdc53p-Cullin-F-box)-mediated ubiquitination and kinetochore function in yeast and also plays a role in the cAMP pathway. Calcyclin (S100A6) is a member of the S100A family of calcium binding proteins and appears to play a role in cell proliferation [].; PDB: 1X5M_A 2JTT_D.
Probab=100.00 E-value=3.1e-43 Score=262.48 Aligned_cols=81 Identities=58% Similarity=0.998 Sum_probs=31.8
Q ss_pred CCchhHHHHHhhhhhhhcccchHHHHHHHHHHhcCCCHHHHHHhhhhhhccCCeeeecccccccCcccccCCCCCccccc
Q 016973 297 VDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKK 376 (379)
Q Consensus 297 ~dWdk~~~~~~~~~~~e~~e~~~~l~~~f~~iY~~~d~d~kram~Ks~~eS~gt~lstnw~~v~~~~~~~~~p~g~~~k~ 376 (379)
+||++|......++++++.+++++||+|||+||++|||||||||||||+|||||||||||+|||+++||++||+|||+||
T Consensus 2 ~~W~~l~~~~~~~~~~d~~d~~a~lm~lfkkiY~~gDDe~KRam~KSf~ES~GT~LSTnW~eV~~~~~~~~pp~g~e~k~ 81 (82)
T PF05002_consen 2 KNWDKLTKKKEKEEEDDEEDPEASLMNLFKKIYDNGDDEMKRAMMKSFTESQGTVLSTNWDEVGKKKVEPSPPDGMEWKK 81 (82)
T ss_dssp ---SSSBHH--------------SHHHHHHHHHTTS-SCHHHHHHHHHHCT-----------------------------
T ss_pred CChHHccccccccccccccCchHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCcccccchhccchhhhcccccccccccc
Confidence 58999986644455555566777899999999999999999999999999999999999999999999999999999999
Q ss_pred c
Q 016973 377 W 377 (379)
Q Consensus 377 ~ 377 (379)
|
T Consensus 82 ~ 82 (82)
T PF05002_consen 82 W 82 (82)
T ss_dssp -
T ss_pred C
Confidence 9
No 5
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=99.94 E-value=1.2e-27 Score=200.31 Aligned_cols=149 Identities=23% Similarity=0.350 Sum_probs=124.3
Q ss_pred CCCcccccccccccccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcCCCceeeecc-ccccccccCcceEEEeCc
Q 016973 169 PARPKYRFQILMHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQP-RLFGKIIPAKCRYEVLST 247 (379)
Q Consensus 169 ~~~~~~~~~~~~~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~-~L~~~I~p~~s~~~v~~~ 247 (379)
|....|-.-++.|.|.|++..|.++|.+.||+.++|+|+|++++|.+.+....|++|.+.+ +|+++|.||+|+.+|.+.
T Consensus 65 pvs~~yl~~vt~ygWDQs~kfVK~yItL~GV~eenVqv~ftp~Sldl~v~dlqGK~y~~~vnnLlk~I~vEks~~kvKtd 144 (224)
T KOG3260|consen 65 PVSSSYLNYVTLYGWDQSNKFVKMYITLEGVDEENVQVEFTPMSLDLKVHDLQGKNYRMIVNNLLKPISVEKSSKKVKTD 144 (224)
T ss_pred cchhhhHHHhhhcCccccCCeeEEEEEeecccccceeEEecccceeeeeeecCCcceeeehhhhccccChhhcccccccc
Confidence 3344555566779999999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred EEEEEEeecCCCCCCccccCCCccCCCccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHhhhhhhhcccchHHHHHHHHH
Q 016973 248 KVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFQE 327 (379)
Q Consensus 248 kiei~L~K~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~~~~dWdk~~~~~~~~~~~e~~e~~~~l~~~f~~ 327 (379)
.|.|.|+|.+..+|.-|+.-...- .+..+|+|- .+. ++.++||++|++
T Consensus 145 ~v~I~~kkVe~~rwd~Lt~~~Ke~----------Kek~kpsl~--------------------ke~--DP~~glmnvmKk 192 (224)
T KOG3260|consen 145 TVLILCKKVENTRWDYLTQVEKEC----------KEKEKPSLD--------------------KET--DPSEGLMNVMKK 192 (224)
T ss_pred eEEEeehhhhcccchHHHHHHHHH----------hhccCcccc--------------------ccC--ChHHHHHHHHHH
Confidence 999999999899999998432110 012333331 111 244689999999
Q ss_pred HhcCCCHHHHHHhhhhhhccCC
Q 016973 328 IYADADEDTRRAMKKSFVESNG 349 (379)
Q Consensus 328 iY~~~d~d~kram~Ks~~eS~g 349 (379)
||.+||+||||+|+|+|+||..
T Consensus 193 ~YeDGD~~mK~tIaKAWtesr~ 214 (224)
T KOG3260|consen 193 IYEDGDDDMKQTIAKAWTESRE 214 (224)
T ss_pred HHhcccHHHHHHHHHHHHHhhh
Confidence 9999999999999999999963
No 6
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=99.88 E-value=2.1e-22 Score=156.18 Aligned_cols=85 Identities=35% Similarity=0.563 Sum_probs=81.4
Q ss_pred ccccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcCCCceeeeccccccccccCcceEEEeCcEEEEEEeecCCCC
Q 016973 181 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQ 260 (379)
Q Consensus 181 ~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~~ 260 (379)
|||||++++|+|+||++++.++++.|+|++++|+|++..++++.|.+.++||++|+|++|+++|.++||||+|+|+++.+
T Consensus 3 ~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~l~L~~~I~~~~s~~~v~~~kvei~L~K~~~~~ 82 (87)
T cd06488 3 HDWHQTGSHVVVSVYAKNSNPELSVVEANSTVLTIHIVFEGNKEFQLDIELWGVIDVEKSSVNMLPTKVEIKLRKAEPGS 82 (87)
T ss_pred ccEeeCCCEEEEEEEECcCCccceEEEecCCEEEEEEECCCCceEEEEeeccceEChhHcEEEecCcEEEEEEEeCCCCc
Confidence 99999999999999999999999999999999999887777878999999999999999999999999999999999899
Q ss_pred CCccc
Q 016973 261 WSSLE 265 (379)
Q Consensus 261 W~~L~ 265 (379)
|++||
T Consensus 83 W~~Le 87 (87)
T cd06488 83 WAKLE 87 (87)
T ss_pred CccCC
Confidence 99996
No 7
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=99.87 E-value=3.9e-22 Score=159.48 Aligned_cols=102 Identities=19% Similarity=0.334 Sum_probs=89.5
Q ss_pred cccccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcCCCceeeeccccccccccCcceEEEeCcEEEEEEeecCC-
Q 016973 180 MHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP- 258 (379)
Q Consensus 180 ~~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~- 258 (379)
.+.|||+.+.|+|||++++ .++++|+|++++|+|+....+|..|.++|+||++|+|++|+|+|++++|+|+|+|++.
T Consensus 3 ~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~~~l~f~~~~~~g~~y~~~l~l~~~I~pe~Sk~~v~~r~ve~~L~K~~~~ 80 (106)
T cd00237 3 KTLWYDRRDYVFIEFCVED--SKDVKVDFEKSKLTFSCLNGDNVKIYNEIELYDRVDPNDSKHKRTDRSILCCLRKGKEG 80 (106)
T ss_pred cceeeECCCEEEEEEEeCC--CCCcEEEEecCEEEEEEECCCCcEEEEEEEeecccCcccCeEEeCCceEEEEEEeCCCC
Confidence 3889999999999999997 5799999999999999865567789999999999999999999999999999999975
Q ss_pred CCCCccccCCCccCCCccCCCCCCCCCCCCCCCCCCCCCCchhHHH
Q 016973 259 IQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEA 304 (379)
Q Consensus 259 ~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~~~~dWdk~~~ 304 (379)
..|++|++. ..++.|. ++|||||.+
T Consensus 81 ~~WprL~k~----------------~~k~~~l-----k~DfdkW~D 105 (106)
T cd00237 81 VAWPRLTKE----------------KAKPNWL-----SVDFDNWRD 105 (106)
T ss_pred CCCchhhcC----------------CCCCCcE-----ECcchhccC
Confidence 589999986 3345555 679999984
No 8
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=99.86 E-value=9.6e-22 Score=151.68 Aligned_cols=84 Identities=37% Similarity=0.757 Sum_probs=80.5
Q ss_pred cccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcCCCceeeeccccccccccCcceEEEeCcEEEEEEeecCCCCC
Q 016973 182 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQW 261 (379)
Q Consensus 182 ~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~~W 261 (379)
||||+.+.|+|+|+++++.++++.|+|++++|+|++...+|..|.+.++||++|+|++|+|+|++++|||+|+|+++..|
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~~~l~~~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~~W 80 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEKRELSATVKLPSGNDYSLKLHLLHPIVPEQSSYKILSTKIEIKLKKTEAIRW 80 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeCCEEEEEEECCCCCcEEEeeecCceecchhcEEEEeCcEEEEEEEcCCCCCC
Confidence 79999999999999999999999999999999999987777789999999999999999999999999999999988999
Q ss_pred Cccc
Q 016973 262 SSLE 265 (379)
Q Consensus 262 ~~L~ 265 (379)
++||
T Consensus 81 ~~Le 84 (84)
T cd06489 81 SKLE 84 (84)
T ss_pred ccCC
Confidence 9996
No 9
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=99.84 E-value=8.8e-21 Score=153.36 Aligned_cols=86 Identities=22% Similarity=0.346 Sum_probs=79.6
Q ss_pred cccccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcC-CCceeeeccccccccccCcceEEEeCcEEEEEEeecC-
Q 016973 180 MHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP-GEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAE- 257 (379)
Q Consensus 180 ~~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~-~~~~~~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~- 257 (379)
.|+||||.+.|+|+|+++++ +++.|.|++++|+|++... ++..|.+.++||++|+|++|+|+|.+++|+|+|+|++
T Consensus 2 ~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~~~l~v~~~~~~~~~~y~~~~~L~~~I~pe~s~~~v~~~kveI~L~K~~~ 79 (108)
T cd06465 2 PVLWAQRSDVVYLTIELPDA--KDPKIKLEPTSLSFKAKGGGGGKKYEFDLEFYKEIDPEESKYKVTGRQIEFVLRKKEA 79 (108)
T ss_pred ceeeeECCCEEEEEEEeCCC--CCcEEEEECCEEEEEEEcCCCCeeEEEEeEhhhhccccccEEEecCCeEEEEEEECCC
Confidence 38999999999999999988 8999999999999998654 5667999999999999999999999999999999999
Q ss_pred CCCCCccccC
Q 016973 258 PIQWSSLEFS 267 (379)
Q Consensus 258 ~~~W~~L~~~ 267 (379)
+..|++|+..
T Consensus 80 ~~~W~~L~~~ 89 (108)
T cd06465 80 GEYWPRLTKE 89 (108)
T ss_pred CCCCcccccC
Confidence 7899999975
No 10
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.84 E-value=1.9e-20 Score=171.33 Aligned_cols=120 Identities=31% Similarity=0.515 Sum_probs=116.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 016973 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (379)
Q Consensus 1 ~A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~ 80 (379)
+|+.|..+|+.+++.++|++|+..|++||.++|+++.+|++||.+|.+||.|+.|++||+.|+.++|.+.++|.|+|.+|
T Consensus 80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~ 159 (304)
T KOG0553|consen 80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAY 159 (304)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (379)
Q Consensus 81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (379)
+.+|+|.+|+.+|+++++++|++..++..+..++..+++.
T Consensus 160 ~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~ 199 (304)
T KOG0553|consen 160 LALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEP 199 (304)
T ss_pred HccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999998888875
No 11
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=99.81 E-value=1.1e-19 Score=142.77 Aligned_cols=88 Identities=27% Similarity=0.450 Sum_probs=81.3
Q ss_pred cccccccccCCeEEEEEEeCCCCC---CceEEEEeecEEEEEEEcCCCceeeeccc-cccccccCcceEEEeCcEEEEEE
Q 016973 178 ILMHEFYQKPEEVVVTVFAKGIPA---KNVTVDFGEQILSVSIDVPGEEAYHFQPR-LFGKIIPAKCRYEVLSTKVEIRL 253 (379)
Q Consensus 178 ~~~~~W~Qt~~~V~i~i~~k~~~~---~~v~v~~~~~~l~v~~~~~~~~~~~~~~~-L~~~I~p~~s~~~v~~~kiei~L 253 (379)
|++|+|+||++.|+|+|+++++.. +++.|+|++++|+|.+...+|.+|.+.+. ||++|+|++|+|++.+++|+|+|
T Consensus 1 ~~~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~~L~~~I~~e~s~~~~~~~ki~i~L 80 (92)
T cd06468 1 ITKYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLNGKNYRFTINRLLKKIDPEKSSFKVKTDRIVITL 80 (92)
T ss_pred CceeeeecCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECCCCcEEEEEehHhhCccCccccEEEEeCCEEEEEE
Confidence 456999999999999999999876 99999999999999987667788999885 99999999999999999999999
Q ss_pred eecCCCCCCccc
Q 016973 254 AKAEPIQWSSLE 265 (379)
Q Consensus 254 ~K~~~~~W~~L~ 265 (379)
.|+++..|++|+
T Consensus 81 ~K~~~~~W~~L~ 92 (92)
T cd06468 81 AKKKEKKWESLT 92 (92)
T ss_pred EeCCCCccCccC
Confidence 999989999984
No 12
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=99.80 E-value=2.9e-19 Score=137.78 Aligned_cols=84 Identities=49% Similarity=0.782 Sum_probs=79.2
Q ss_pred cccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcCCCceeeeccccccccccCcceEEEeCcEEEEEEeecCCCCC
Q 016973 182 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQW 261 (379)
Q Consensus 182 ~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~~W 261 (379)
||||+++.|+|+|+++|+.++++.|.|++++|+|++...++..|.+.++||++|+|++|+|++.+++|+|+|+|+....|
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~vei~L~K~~~~~W 80 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSIILPGGSEYQLELDLFGPIDPEQSKVSVLPTKVEITLKKAEPGSW 80 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEecCEEEEEEECCCCCeEEEecccccccCchhcEEEEeCeEEEEEEEcCCCCCC
Confidence 69999999999999999999999999999999999876546679999999999999999999999999999999998999
Q ss_pred Cccc
Q 016973 262 SSLE 265 (379)
Q Consensus 262 ~~L~ 265 (379)
++|+
T Consensus 81 ~~L~ 84 (84)
T cd06466 81 PSLE 84 (84)
T ss_pred ccCC
Confidence 9985
No 13
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=99.77 E-value=2.3e-18 Score=133.29 Aligned_cols=83 Identities=29% Similarity=0.444 Sum_probs=73.0
Q ss_pred ccccccCCeEEEEEEeCC--CCCCceEEEEeecEEEEEEEcCCCceeeeccccccccccCcceEEEeC--cEEEEEEeec
Q 016973 181 HEFYQKPEEVVVTVFAKG--IPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLS--TKVEIRLAKA 256 (379)
Q Consensus 181 ~~W~Qt~~~V~i~i~~k~--~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~--~kiei~L~K~ 256 (379)
||||||+++|+|+||.|+ .+..++.+.++.++|+|++..+ +..|.+.++||++|+|+. +++++. +||||+|+|+
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~~l~v~~~~~-~~~~~~~~~L~~~I~~~~-~~~~~~~~~KVEI~L~K~ 78 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQRELRVEIILG-DKSYLLHLDLSNEVQWPC-EVRISTETGKIELVLKKK 78 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCCCEEEEEEECC-CceEEEeeeccccCCCCc-EEEEcccCceEEEEEEcC
Confidence 799999999999999884 6667778888999999998876 777999999999998665 899985 4999999999
Q ss_pred CCCCCCccc
Q 016973 257 EPIQWSSLE 265 (379)
Q Consensus 257 ~~~~W~~L~ 265 (379)
++..|++|.
T Consensus 79 e~~~W~~Lg 87 (87)
T cd06490 79 EPEKWTSLG 87 (87)
T ss_pred CCCccccCc
Confidence 999999983
No 14
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=6.8e-19 Score=147.69 Aligned_cols=113 Identities=24% Similarity=0.313 Sum_probs=94.5
Q ss_pred cccccccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEc-CCCceeeeccccccccccCcceEEEeCcEEEEEEeec
Q 016973 178 ILMHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDV-PGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKA 256 (379)
Q Consensus 178 ~~~~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~-~~~~~~~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~ 256 (379)
++.+.|+|+.+.|+|+|.+. ...++.|.+++..|+|+.+. .++..|.++|+||++|+|++|+++++++.|.++|+|+
T Consensus 7 ~p~v~Waqr~~~vyltv~Ve--d~~d~~v~~e~~~l~fs~k~~~d~~~~~~~ief~~eIdpe~sk~k~~~r~if~i~~K~ 84 (180)
T KOG3158|consen 7 PPEVKWAQRRDLVYLTVCVE--DAKDVHVNLEPSKLTFSCKSGADNHKYENEIEFFDEIDPEKSKHKRTSRSIFCILRKK 84 (180)
T ss_pred CCcchhhhhcCeEEEEEEec--cCccceeeccccEEEEEeccCCCceeeEEeeehhhhcCHhhccccccceEEEEEEEcc
Confidence 34467999999999999998 55688999999999999876 4555677889999999999999999999999999999
Q ss_pred CC-CCCCccccCCCccCCCccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHhhhhhhh
Q 016973 257 EP-IQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEE 313 (379)
Q Consensus 257 ~~-~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~~~~dWdk~~~~~~~~~~~e 313 (379)
+. .+||+|++. ..++.|. +.|||||.++.++++.++
T Consensus 85 e~~~~WprLtke----------------K~K~hwL-----kvDFdkW~Dededde~~~ 121 (180)
T KOG3158|consen 85 ELGEYWPRLTKE----------------KAKLHWL-----KVDFDKWVDEDEDDEAED 121 (180)
T ss_pred ccccccchhhhc----------------ccccceE-----Ecchhhccccccccchhh
Confidence 87 899999976 4567776 569999998754444433
No 15
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=3.9e-16 Score=152.21 Aligned_cols=117 Identities=32% Similarity=0.531 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~ 81 (379)
|......|+.+|..|+|..|+..|++||..+|+++.+|.|||.||.+++++..|+.|++.+++++|++..+|+|.|.+++
T Consensus 358 A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~ 437 (539)
T KOG0548|consen 358 AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALR 437 (539)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 56678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 016973 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (379)
Q Consensus 82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~ 118 (379)
.+.+|+.|+.+|+.+++++|++..+..++.+|...+.
T Consensus 438 ~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~ 474 (539)
T KOG0548|consen 438 AMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQR 474 (539)
T ss_pred HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999988763
No 16
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.68 E-value=2.1e-16 Score=119.97 Aligned_cols=78 Identities=26% Similarity=0.346 Sum_probs=73.3
Q ss_pred ccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcCCCceeeeccccccccccCcceEEEeCcEEEEEEeecCCCCCC
Q 016973 183 FYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWS 262 (379)
Q Consensus 183 W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~~W~ 262 (379)
|+|+++.|+|+|+++|+.++++.|+++++.|.|++ ..|.+.++||++|+|++|++++.+++|+|+|.|+++..|+
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~~~l~i~~-----~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~K~~~~~W~ 75 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSDLYLKVNF-----PPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKKEPGIWE 75 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEecCEEEEcC-----CCEEEEEeCcccccccccEEEEeCCEEEEEEEeCCCCccc
Confidence 99999999999999999999999999999888765 3699999999999999999999999999999999888999
Q ss_pred ccc
Q 016973 263 SLE 265 (379)
Q Consensus 263 ~L~ 265 (379)
+|+
T Consensus 76 ~L~ 78 (78)
T cd06469 76 ALC 78 (78)
T ss_pred ccC
Confidence 996
No 17
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=99.67 E-value=3.2e-16 Score=118.90 Aligned_cols=76 Identities=37% Similarity=0.574 Sum_probs=69.2
Q ss_pred cccccccCCeEEEEEEeCCCC--CCceEEEEeecEEEEEEEcCCCceeeeccccccccccCcceEEEeCcEEEEEEee
Q 016973 180 MHEFYQKPEEVVVTVFAKGIP--AKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAK 255 (379)
Q Consensus 180 ~~~W~Qt~~~V~i~i~~k~~~--~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~kiei~L~K 255 (379)
+|+|+||.+.|+|+|++++.. ++++.|+|++++|+|++...++..|.+.++||++|+|++|+|++.+++|+|+|+|
T Consensus 2 ~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~i~i~L~K 79 (79)
T PF04969_consen 2 RYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGDGKEYLLEGELFGEIDPDESTWKVKDNKIEITLKK 79 (79)
T ss_dssp SEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETTSCEEEEEEEBSS-BECCCEEEEEETTEEEEEEEB
T ss_pred CeEEEECCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccCCceEEEEEEEeeeEcchhcEEEEECCEEEEEEEC
Confidence 499999999999999997765 8999999999999999987666889999999999999999999999999999998
No 18
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.67 E-value=2.9e-17 Score=158.93 Aligned_cols=319 Identities=24% Similarity=0.192 Sum_probs=208.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 016973 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (379)
Q Consensus 1 ~A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~ 80 (379)
+|..+..+|+.++..+.|+.|+.+|.+||+++|+++.++-+|+.++++.++|..|+.|+.+|++++|...++|+|+|.++
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~ 82 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAV 82 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHH
Confidence 57888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhh--cccCCCCCCCCCCccccCCCCCCCCCCCCCccccccc
Q 016973 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEET--GELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVM 158 (379)
Q Consensus 81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~--~~~~~~~~~~~~p~~~~p~~~~~~~~~~~~~~~~~~~ 158 (379)
..+++|.+|+..|+....+.|+++.+.+.+..|+..+.... ..++.+...+.++..+. -...
T Consensus 83 m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~~~~~d~~s~~~~~----~~~~------------ 146 (476)
T KOG0376|consen 83 MALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAILTPEGDKKSVVEMK----IDEE------------ 146 (476)
T ss_pred HhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcccCCccCCccccccc----cccc------------
Confidence 99999999999999999999999999999999999988862 22222221111111000 0000
Q ss_pred ccccccccCCCCCcccccccccccccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcCCCceeeeccccccccccC
Q 016973 159 DVSNEAAMAAPARPKYRFQILMHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPA 238 (379)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~ 238 (379)
...+ -.....-+.+. .. .++.+.|+.-+ .+ +. . .+.+.-.+.+.|+..
T Consensus 147 ~~~~--i~~~y~g~~le-----~~---------------kvt~e~vk~~~-----~~-~~--~--~~~L~~k~a~~i~~~ 194 (476)
T KOG0376|consen 147 DMDL--IESDYSGPVLE-----DH---------------KVTLEFVKTLM-----EV-FK--N--QKKLPKKYAYSILDL 194 (476)
T ss_pred cccc--cccccCCcccc-----cc---------------hhhHHHHHHHH-----Hh-hh--c--ccccccccceeeHHH
Confidence 0000 00001111222 11 12222221111 11 11 1 123333455555555
Q ss_pred cce-EEEeCcEEEEEEeecCCCCCCccccC-CCcc-CCCccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHhhhhhhhcc
Q 016973 239 KCR-YEVLSTKVEIRLAKAEPIQWSSLEFS-KGAV-VPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKL 315 (379)
Q Consensus 239 ~s~-~~v~~~kiei~L~K~~~~~W~~L~~~-~~~~-~~~~~~~~~~~~~~~~~~p~s~~~~~dWdk~~~~~~~~~~~e~~ 315 (379)
.+. +.+.+.-|+|. .....|-.+.+. ..+. ....+-...........|-. ..||..+.....+-......
T Consensus 195 ~~~~~~~l~~~ve~~---~~~d~~~sv~gd~hGqfydl~nif~l~g~Ps~t~~ylf----ngdfv~rgs~s~e~~~~~~~ 267 (476)
T KOG0376|consen 195 AKTILRKLPSLVEIS---VPGDVKISVCGDTHGQFYDLLNIFELNGLPSETNPYLF----NGDFVDRGSWSVEVILTLFA 267 (476)
T ss_pred HhhHHhcCCcceEee---cCCCceEEecCCccccccchhhhHhhcCCCCCcccccc----cCceeeecccceeeeeeehh
Confidence 555 34455667777 333333333322 1110 00000000000011122221 22555554322222233344
Q ss_pred cchHHHHHHHHHHhcCCCHHHHHHhhhhhhccCCeeeecccccccCcccccCCCCCcccccc
Q 016973 316 DGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKW 377 (379)
Q Consensus 316 e~~~~l~~~f~~iY~~~d~d~kram~Ks~~eS~gt~lstnw~~v~~~~~~~~~p~g~~~k~~ 377 (379)
.+...+|+||-..+.-.+++|.+.|-..+-.+.+++.+++|..+ .+..-+|.|+.-..|
T Consensus 268 ~kl~~pn~~fl~rgn~Es~~m~~iy~f~~e~~~kyte~~~~~f~---~~f~~LPl~~~i~~~ 326 (476)
T KOG0376|consen 268 FKLLYPNNFFLLRGNHESDNMNKIYGFEGEVKAKYTEEMFNLFS---EVFIWLPLAHLINNK 326 (476)
T ss_pred hcccCCcceeeccCCccchHHHHHhCCCcchhhhhHHHHHHhhh---hhhccccchhhhcCc
Confidence 55567899999999999999999999999999999999999998 777889999887776
No 19
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.66 E-value=5.9e-16 Score=118.62 Aligned_cols=83 Identities=37% Similarity=0.636 Sum_probs=78.0
Q ss_pred ccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcCCCceeeeccccccccccCcceEEEeCcEEEEEEeecCC-CCC
Q 016973 183 FYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP-IQW 261 (379)
Q Consensus 183 W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~-~~W 261 (379)
|+|+++.|+|+|+++++.++++.|+|++++|+|++...++..|.+.++|+++|+|++|++++.+++|+|+|.|+.+ ..|
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~~~~~~W 80 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGGGGKEYLLEGELFGPIDPEESKWTVEDRKIEITLKKKEPGEWW 80 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEEecCEEEEEeeCCCCCceEEeeEccCccchhhcEEEEeCCEEEEEEEECCCCCCC
Confidence 9999999999999999999999999999999999876556689999999999999999999999999999999988 899
Q ss_pred Cccc
Q 016973 262 SSLE 265 (379)
Q Consensus 262 ~~L~ 265 (379)
++|+
T Consensus 81 ~~l~ 84 (84)
T cd06463 81 PRLE 84 (84)
T ss_pred cccC
Confidence 9985
No 20
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=99.66 E-value=5.5e-16 Score=119.68 Aligned_cols=82 Identities=16% Similarity=0.329 Sum_probs=71.7
Q ss_pred ccccccCCeEEEEEEe-CCCCCCceEEEEeecEEEEEEEcCCCceeeeccccccccccCcceEEEeCc-EEEEEEeecCC
Q 016973 181 HEFYQKPEEVVVTVFA-KGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLST-KVEIRLAKAEP 258 (379)
Q Consensus 181 ~~W~Qt~~~V~i~i~~-k~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~-kiei~L~K~~~ 258 (379)
|+|+||.+.|+|+|++ +++.+++++|.|++++|.|.+. ++ ...+.++||+.|+|+.|+|++... +|+|+|.|++.
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~--~~-~~~~~g~L~~~I~~d~Stw~i~~~~~l~i~L~K~~~ 77 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALK--DQ-APLLEGKLYSSIDHESSTWIIKENKSLEVSLIKKDE 77 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEecCEEEEEeC--CC-CeEEeCcccCcccccCcEEEEeCCCEEEEEEEECCC
Confidence 7899999999999999 5899999999999999999874 33 344778999999999999999655 79999999986
Q ss_pred -CCCCccc
Q 016973 259 -IQWSSLE 265 (379)
Q Consensus 259 -~~W~~L~ 265 (379)
..|++|.
T Consensus 78 ~~~W~~L~ 85 (85)
T cd06493 78 GPTWPELV 85 (85)
T ss_pred CccccccC
Confidence 5999983
No 21
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.65 E-value=5.7e-15 Score=125.63 Aligned_cols=116 Identities=13% Similarity=0.152 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l 83 (379)
.++..|..++..|+|++|+..|.+++..+|.+..+++++|.++..+|++++|+..|.+++.++|.++.+++++|.++..+
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (379)
Q Consensus 84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~ 119 (379)
|++++|+.+|++++.++|++......++.++..+..
T Consensus 106 g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~~ 141 (144)
T PRK15359 106 GEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVDT 141 (144)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 999999999999999999999998888888776654
No 22
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=99.64 E-value=1e-15 Score=118.19 Aligned_cols=81 Identities=25% Similarity=0.352 Sum_probs=73.7
Q ss_pred ccccccCCeEEEEEEe-CCCCCCceEEEEeecEEEEEEEcCCCceeeeccccccccccCcceEEEeC-cEEEEEEeecCC
Q 016973 181 HEFYQKPEEVVVTVFA-KGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLS-TKVEIRLAKAEP 258 (379)
Q Consensus 181 ~~W~Qt~~~V~i~i~~-k~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~-~kiei~L~K~~~ 258 (379)
|.|+|+.+.|+|+|.+ +++.++++.|+|++++|+|++.. ..+.+...||++|+|++|+|++.+ ++|+|+|.|+++
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~~---~~~~l~~~L~~~I~~~~s~w~~~~~~~v~i~L~K~~~ 77 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKG---GEPLLDGELYAKVKVDESTWTLEDGKLLEITLEKRNE 77 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEEEcCEEEEEECC---CCceEcCcccCceeEcCCEEEEeCCCEEEEEEEECCC
Confidence 6899999999999987 46889999999999999999852 357788899999999999999999 999999999997
Q ss_pred -CCCCcc
Q 016973 259 -IQWSSL 264 (379)
Q Consensus 259 -~~W~~L 264 (379)
..|++|
T Consensus 78 ~~~W~~L 84 (85)
T cd06467 78 GEWWPSL 84 (85)
T ss_pred Ccccccc
Confidence 799987
No 23
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.59 E-value=5.3e-14 Score=119.18 Aligned_cols=118 Identities=16% Similarity=0.124 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~ 82 (379)
+.++..|..++..|++++|..+|.-++.++|.++..|+++|.|+..+|+|.+|+..|.+|+.++|+++.++++.|+|++.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (379)
Q Consensus 83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (379)
+|+.+.|+.+|+.++.+...+++......+++..|...
T Consensus 116 lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L~~l 153 (157)
T PRK15363 116 CDNVCYAIKALKAVVRICGEVSEHQILRQRAEKMLQQL 153 (157)
T ss_pred cCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHh
Confidence 99999999999999999877777777777777666654
No 24
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=2.5e-14 Score=136.30 Aligned_cols=119 Identities=24% Similarity=0.406 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---------------AELFADRAQASIKLQNFTEAVADANRAIELE 66 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~---------------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~ 66 (379)
|......|+.+|+.|+|..|+..|.+|+..-... ..+++|+|.||+++++|.+|+..+.++|.++
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~ 287 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD 287 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 5567889999999999999999999999884422 4678999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973 67 PSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (379)
Q Consensus 67 p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (379)
|.+.+|+||+|.+|..+|+|+.|+..|+++++++|+|..+...+..|..+++.+
T Consensus 288 ~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~ 341 (397)
T KOG0543|consen 288 PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY 341 (397)
T ss_pred CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999888876
No 25
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.57 E-value=3.9e-14 Score=122.80 Aligned_cols=118 Identities=34% Similarity=0.482 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS-----AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK 76 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~-----~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~l 76 (379)
++.+...|+.+|.+|+|.+|..-|+.||.+-|.. ..+|.+||.|+++++..+.|+.+|.+||+++|.+.+|+.|+
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR 174 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR 174 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence 5678899999999999999999999999998875 57899999999999999999999999999999999999999
Q ss_pred HHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973 77 ATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (379)
Q Consensus 77 a~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~ 119 (379)
|.+|..+..|++|+..|.+.++++|...++...+.++...+..
T Consensus 175 Aeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~e 217 (271)
T KOG4234|consen 175 AEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINE 217 (271)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHH
Confidence 9999999999999999999999999999888888777655544
No 26
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.5e-14 Score=141.23 Aligned_cols=114 Identities=30% Similarity=0.496 Sum_probs=111.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 016973 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (379)
Q Consensus 1 ~A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~ 80 (379)
|+..+..+|+.+|..|+|+.|+.+|+.+|.++|.|..+|.+|+.||..+|+|++|++|..++++++|..+++|.|+|.++
T Consensus 1 ~a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~ 80 (539)
T KOG0548|consen 1 KAVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAAL 80 (539)
T ss_pred ChhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 016973 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECE 114 (379)
Q Consensus 81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (379)
+-+|+|++|+..|.++++.+|+|..++..+..+.
T Consensus 81 ~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 81 FGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 9999999999999999999999999999998887
No 27
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.54 E-value=3.3e-13 Score=112.77 Aligned_cols=116 Identities=18% Similarity=0.301 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~ 82 (379)
..++..|..++..|++++|+..|++++..+|.+..+++++|.|++.+|++++|+..+.+++.++|.++..++.+|.+|..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 016973 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (379)
Q Consensus 83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~ 118 (379)
+|++++|+..|+++++++|++........++...+.
T Consensus 98 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 133 (135)
T TIGR02552 98 LGEPESALKALDLAIEICGENPEYSELKERAEAMLE 133 (135)
T ss_pred cCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHh
Confidence 999999999999999999999998888877776553
No 28
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=99.52 E-value=6.3e-14 Score=109.38 Aligned_cols=81 Identities=26% Similarity=0.519 Sum_probs=71.7
Q ss_pred cccccccCCeEEEEE-EeCCCCCCceEEEEeecEEEEEEEcCCCceeeeccccccccccCcceEEEeCcE-EEEEEeecC
Q 016973 180 MHEFYQKPEEVVVTV-FAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTK-VEIRLAKAE 257 (379)
Q Consensus 180 ~~~W~Qt~~~V~i~i-~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~k-iei~L~K~~ 257 (379)
.|.|+||.+.|+|+| +.+|++.+++.|.|+.++|+|.+. |.. .+..+||+.|+|+.|+|++.+.+ |+|.|.|.+
T Consensus 7 ~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~---g~~-~l~G~L~~~I~~destWtled~k~l~I~L~K~~ 82 (93)
T cd06494 7 WGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVK---GQE-VLKGKLFDSVVADECTWTLEDRKLIRIVLTKSN 82 (93)
T ss_pred CcEEEeEcCEEEEEEECCCCCceeeEEEEEEcCEEEEEEC---CEE-EEcCcccCccCcccCEEEEECCcEEEEEEEeCC
Confidence 388999999999999 557899999999999999999984 444 57789999999999999999998 699999986
Q ss_pred CC---CCCcc
Q 016973 258 PI---QWSSL 264 (379)
Q Consensus 258 ~~---~W~~L 264 (379)
.. .|++|
T Consensus 83 ~~~~~~W~sl 92 (93)
T cd06494 83 RDAGNCWKSL 92 (93)
T ss_pred CCCCcccccc
Confidence 54 89987
No 29
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.50 E-value=8.2e-14 Score=129.50 Aligned_cols=117 Identities=26% Similarity=0.340 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~ 82 (379)
.++.++|+.||++|.|++||.||.+++..+|.|+.++.+||.+|+++++|..|..||..|+.++..+.++|-|+|.+-+.
T Consensus 98 SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 98 SEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARES 177 (536)
T ss_pred HHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (379)
Q Consensus 83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~ 119 (379)
+|...+|...++.+++|.|++.++...++.+...+..
T Consensus 178 Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~ 214 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLALEPKNIELKKSLARINSLRER 214 (536)
T ss_pred HhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhh
Confidence 9999999999999999999999888887777654443
No 30
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.45 E-value=2.8e-12 Score=122.11 Aligned_cols=108 Identities=21% Similarity=0.149 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~ 81 (379)
+..++.+|..+...|++.+|+..|++++.++|+++.+|+++|.++..+|++++|+..|.++++++|++..+++++|.+++
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHHHHhcCCCChHHHHH
Q 016973 82 KLEEYETAKVALEKGASLAPGDSRFTNL 109 (379)
Q Consensus 82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~ 109 (379)
..|++++|+..|+++++++|+++....|
T Consensus 144 ~~g~~~eA~~~~~~al~~~P~~~~~~~~ 171 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQDDPNDPYRALW 171 (296)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999999999999999999999853333
No 31
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=99.44 E-value=3.4e-13 Score=119.47 Aligned_cols=91 Identities=33% Similarity=0.492 Sum_probs=83.0
Q ss_pred cccccccccccccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEc-CCCceeeeccccccccccCcceEEEeCcEEE
Q 016973 172 PKYRFQILMHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDV-PGEEAYHFQPRLFGKIIPAKCRYEVLSTKVE 250 (379)
Q Consensus 172 ~~~~~~~~~~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~-~~~~~~~~~~~L~~~I~p~~s~~~v~~~kie 250 (379)
.+.| |||.||+..|+|+||.++..++...|+.....|.|++.. .++..|.+.++|++.|++++|++.++.+|||
T Consensus 213 ~~cR-----~Dwhqt~~~Vti~VY~k~~lpe~s~iean~~~l~V~ivf~~gna~fd~d~kLwgvvnve~s~v~m~~tkVE 287 (320)
T KOG1667|consen 213 VKCR-----HDWHQTNGFVTINVYAKGALPETSNIEANGTTLHVSIVFGFGNASFDLDYKLWGVVNVEESSVVMGETKVE 287 (320)
T ss_pred ccch-----hhhhhcCCeEEEEEEeccCCcccceeeeCCeEEEEEEEecCCCceeeccceeeeeechhhceEEeecceEE
Confidence 3567 999999999999999999888888999999889888766 4566788899999999999999999999999
Q ss_pred EEEeecCCCCCCccccC
Q 016973 251 IRLAKAEPIQWSSLEFS 267 (379)
Q Consensus 251 i~L~K~~~~~W~~L~~~ 267 (379)
|+|+|++++.|.+|+..
T Consensus 288 Isl~k~ep~sWa~Le~p 304 (320)
T KOG1667|consen 288 ISLKKAEPGSWARLEFP 304 (320)
T ss_pred EEEeccCCCCcccccCC
Confidence 99999999999999975
No 32
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=1.3e-12 Score=126.47 Aligned_cols=119 Identities=24% Similarity=0.398 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~ 81 (379)
|.++..+||-+|++|+|++||++|++||++.|+.+.+|.||+.||..+|++++.++++.+|++++|++.++++|++.++.
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHHHhh
Q 016973 82 KLEEYETAKVALEKGASLA-PGDSRFTNLIKECEERIAEE 120 (379)
Q Consensus 82 ~lg~y~~A~~~~~~a~~l~-p~~~~~~~~l~~~~~~l~~~ 120 (379)
.+|++++|+....-..-+. =.+.+....+.++..+++..
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ 234 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMK 234 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHH
Confidence 9999999998876433222 24555555666665555554
No 33
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.42 E-value=6.6e-12 Score=112.50 Aligned_cols=112 Identities=17% Similarity=0.168 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHccC--HHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQAS-IKLQN--FTEAVADANRAIELEPSMSKAYWRKAT 78 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~-~~lg~--~~eAl~~~~~Al~l~p~~~~a~~~la~ 78 (379)
++.|+..|..+...|++++|+.+|.+++.++|+++.++..+|.++ ...|+ +++|+..++++++++|++..+++.+|.
T Consensus 73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~ 152 (198)
T PRK10370 73 SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLAS 152 (198)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence 457889999999999999999999999999999999999999985 67787 599999999999999999999999999
Q ss_pred HHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 016973 79 ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (379)
Q Consensus 79 ~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~ 113 (379)
+++.+|+|++|+.+|+++++++|.+..-...+..+
T Consensus 153 ~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~~i 187 (198)
T PRK10370 153 DAFMQADYAQAIELWQKVLDLNSPRVNRTQLVESI 187 (198)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence 99999999999999999999998776655555444
No 34
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=2.4e-12 Score=122.45 Aligned_cols=117 Identities=27% Similarity=0.507 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT 78 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~----~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~ 78 (379)
..+...|+.+|+.|+|..|.++|+++|.++|++ +.+|.+||.+..++|+..+|+.+++.|+.|++...++++++|.
T Consensus 250 e~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~ 329 (486)
T KOG0550|consen 250 EVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRAN 329 (486)
T ss_pred HHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHH
Confidence 356788999999999999999999999999987 6789999999999999999999999999999999999999999
Q ss_pred HHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973 79 ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (379)
Q Consensus 79 ~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (379)
|+..+++|++|++.|++|.++..+ ....+.+.+++..|++.
T Consensus 330 c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkS 370 (486)
T KOG0550|consen 330 CHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKS 370 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHh
Confidence 999999999999999999999887 66777777777777754
No 35
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=99.37 E-value=3.8e-12 Score=98.39 Aligned_cols=82 Identities=22% Similarity=0.285 Sum_probs=71.5
Q ss_pred ccccccCCeEEEEEEeCC---CCCCceEEEEeecEEEEEEEcCCCceeeeccccccccccCcceEEEeC-cEEEEEEeec
Q 016973 181 HEFYQKPEEVVVTVFAKG---IPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLS-TKVEIRLAKA 256 (379)
Q Consensus 181 ~~W~Qt~~~V~i~i~~k~---~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~-~kiei~L~K~ 256 (379)
|.|.||.+.|+|+|.++. ++..++.|+++.++|+|.++ |....++.+||+.|+++.|+|.+-+ +.|+|+|.|.
T Consensus 1 Y~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~---g~~~~i~G~L~~~V~~des~Wtled~~~l~i~L~K~ 77 (87)
T cd06492 1 YRWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLK---GQPPIIDGELYNEVKVEESSWLIEDGKVVTVNLEKI 77 (87)
T ss_pred CccEeecCEEEEEEECCCCCCccceEEEEEEecCEEEEEEC---CCceEEeCcccCcccccccEEEEeCCCEEEEEEEEC
Confidence 679999999999998742 77899999999999999875 4456789999999999999999977 4799999999
Q ss_pred CC-CCCCccc
Q 016973 257 EP-IQWSSLE 265 (379)
Q Consensus 257 ~~-~~W~~L~ 265 (379)
.. ..|++|.
T Consensus 78 ~~~~wW~~l~ 87 (87)
T cd06492 78 NKMEWWSRLV 87 (87)
T ss_pred CCCccccccC
Confidence 76 6899873
No 36
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.36 E-value=2.2e-11 Score=98.70 Aligned_cols=108 Identities=15% Similarity=0.104 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWR 75 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~---~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~---~~a~~~ 75 (379)
++.++..|..++..|+|++|+..|.+++..+|.+ ..+++.+|.++++.|++++|+..|..++..+|++ +.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 5678999999999999999999999999999876 5789999999999999999999999999998874 688999
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHH
Q 016973 76 KATACMKLEEYETAKVALEKGASLAPGDSRFTNL 109 (379)
Q Consensus 76 la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~ 109 (379)
+|.++..+|++++|+..|.+++...|++......
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 9999999999999999999999999998865543
No 37
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.34 E-value=2.7e-12 Score=127.11 Aligned_cols=119 Identities=19% Similarity=0.164 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~ 81 (379)
++++++.|+++-..+.|+.|+.+|.+|+.+.|+++.++.++|.+|+.+|.++-||..|++|+.++|+++.+|.++|.++-
T Consensus 252 ~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALk 331 (966)
T KOG4626|consen 252 LDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALK 331 (966)
T ss_pred hHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHH
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (379)
Q Consensus 82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (379)
..|+..+|..+|.+|+.+.|++.+....++.+...++..
T Consensus 332 d~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~ 370 (966)
T KOG4626|consen 332 DKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKI 370 (966)
T ss_pred hccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccc
Confidence 999999999999999999999988888888887766554
No 38
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=99.33 E-value=1.1e-11 Score=98.24 Aligned_cols=88 Identities=19% Similarity=0.241 Sum_probs=74.5
Q ss_pred cccccccCCeEEEEEEeC-CC-CCCceEEEEeecEEEEEEEcCCCceeeeccccccccccCcceEEEeCc-EEEEEEeec
Q 016973 180 MHEFYQKPEEVVVTVFAK-GI-PAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLST-KVEIRLAKA 256 (379)
Q Consensus 180 ~~~W~Qt~~~V~i~i~~k-~~-~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~-kiei~L~K~ 256 (379)
+|.|.||.+.|.|+|.++ ++ +..++.|+|+.++|.|.+...++..-.+..+||+.|+++.|+|++.+. .|+|+|.|.
T Consensus 6 ~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~~~~~~~~~i~G~L~~~V~~des~Wtled~~~l~I~L~K~ 85 (102)
T cd06495 6 NYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDGGGEKVLMEGEFTHKINTENSLWSLEPGKCVLLSLSKC 85 (102)
T ss_pred ceEEEeECCeEEEEEECCCCCccceEEEEEEEcCEEEEEEecCCCCceEEeCcccCcccCccceEEEeCCCEEEEEEEEC
Confidence 388999999999999886 43 579999999999999998743333335788999999999999999885 589999999
Q ss_pred CCCCCCccccC
Q 016973 257 EPIQWSSLEFS 267 (379)
Q Consensus 257 ~~~~W~~L~~~ 267 (379)
....|++|...
T Consensus 86 ~~~wW~~v~~g 96 (102)
T cd06495 86 SEVWWNAVLKG 96 (102)
T ss_pred CCcccchhhCC
Confidence 77789999764
No 39
>PRK15331 chaperone protein SicA; Provisional
Probab=99.31 E-value=4.8e-11 Score=101.68 Aligned_cols=116 Identities=11% Similarity=0.024 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~ 82 (379)
+.++..|..+|..|+|++|..+|.-+...++.++.+++.+|.|+..+++|++|+..|..|..++++++..+|+.|+||+.
T Consensus 38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~ 117 (165)
T PRK15331 38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (379)
Q Consensus 83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~ 119 (379)
+|+...|+.+|..++. .|.+..+...-......|..
T Consensus 118 l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~~ 153 (165)
T PRK15331 118 MRKAAKARQCFELVNE-RTEDESLRAKALVYLEALKT 153 (165)
T ss_pred hCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHHc
Confidence 9999999999999988 46655555444444444443
No 40
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.31 E-value=4.3e-11 Score=125.26 Aligned_cols=111 Identities=18% Similarity=0.221 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l 83 (379)
.+...|..++..|++++|+..|+++|.++|.+...|+.+|.++..+|++++|+.+|.+++.++|.++.+++.+|.+++.+
T Consensus 333 a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~ 412 (615)
T TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIK 412 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34555555555666666666666666655555555555555555555566666655555555555555555555555555
Q ss_pred cCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 016973 84 EEYETAKVALEKGASLAPGDSRFTNLIKECE 114 (379)
Q Consensus 84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (379)
|+|++|+.+|++++.++|++......++.+.
T Consensus 413 g~~~~A~~~~~kal~l~P~~~~~~~~la~~~ 443 (615)
T TIGR00990 413 GEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQ 443 (615)
T ss_pred CCHHHHHHHHHHHHHcCccCHHHHHHHHHHH
Confidence 5555555555555555555555444444433
No 41
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.31 E-value=4.1e-11 Score=125.40 Aligned_cols=118 Identities=14% Similarity=0.142 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~ 82 (379)
..++..|.+++..|+|++|+..|++++..+|+++.+++.+|.+++.+|++++|+.+|.+++.++|.+..+++.+|.+++.
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~ 445 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK 445 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (379)
Q Consensus 83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (379)
+|++++|+..|++++.+.|+++.+...++.+...++..
T Consensus 446 ~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~ 483 (615)
T TIGR00990 446 EGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKF 483 (615)
T ss_pred CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCH
Confidence 99999999999999999999999988888888777665
No 42
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.30 E-value=1.8e-11 Score=121.46 Aligned_cols=113 Identities=17% Similarity=0.173 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~ 81 (379)
|....+.|..+-++|++++|+.+|++||++.|..+++|.++|..|-.+|+..+|+++|.+|+.++|.+++++-++|.+|.
T Consensus 388 aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~k 467 (966)
T KOG4626|consen 388 AAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYK 467 (966)
T ss_pred hhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhh
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 016973 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECE 114 (379)
Q Consensus 82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (379)
..|+..+|+..|+.|+++.|+.+++...+..|.
T Consensus 468 DsGni~~AI~sY~~aLklkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 468 DSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCL 500 (966)
T ss_pred ccCCcHHHHHHHHHHHccCCCCchhhhHHHHHH
Confidence 999999999999999999999888665555443
No 43
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.28 E-value=6.9e-11 Score=89.53 Aligned_cols=99 Identities=32% Similarity=0.493 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l 83 (379)
.++..|..++..|++.+|+..|.+++...|.+..+++.+|.++...+++++|+..+.+++.+.|.+..+++.+|.++..+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhcCCC
Q 016973 84 EEYETAKVALEKGASLAPG 102 (379)
Q Consensus 84 g~y~~A~~~~~~a~~l~p~ 102 (379)
|+++.|...+.+++.++|.
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999988773
No 44
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.24 E-value=3.5e-11 Score=88.58 Aligned_cols=66 Identities=35% Similarity=0.519 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc-CHHHHHHHHHHHHhcCC
Q 016973 36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE-EYETAKVALEKGASLAP 101 (379)
Q Consensus 36 ~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg-~y~~A~~~~~~a~~l~p 101 (379)
+..|..+|.+++.+|+|++|+.+|.+++.++|+++.+|+++|.+|+.+| ++.+|+.+|+++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3444444444444455555555555555555444445555555554444 34455555555444444
No 45
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.7e-11 Score=109.14 Aligned_cols=100 Identities=29% Similarity=0.476 Sum_probs=96.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 016973 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (379)
Q Consensus 1 ~A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~ 80 (379)
++.++..+|+.+|....|..|+.+|.+||.++|..+.+|.+||.||+++++++.+..++.+|+++.|+...++|.+|.++
T Consensus 9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~ 88 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL 88 (284)
T ss_pred HHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHH
Confidence 47789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCHHHHHHHHHHHHhcC
Q 016973 81 MKLEEYETAKVALEKGASLA 100 (379)
Q Consensus 81 ~~lg~y~~A~~~~~~a~~l~ 100 (379)
.....|..|+..+++++.+.
T Consensus 89 l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 89 LQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred HhhccccHHHHHHHHHHHHH
Confidence 99999999999999997763
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.24 E-value=1.3e-11 Score=123.56 Aligned_cols=119 Identities=18% Similarity=0.275 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~ 82 (379)
+.|...||++--+++++.||++|.+|+.++|....+|..+|+=+.....|+.|..+|+.|+.++|++..|||.+|.+|.+
T Consensus 422 esWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K 501 (638)
T KOG1126|consen 422 ESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK 501 (638)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhh
Q 016973 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEET 121 (379)
Q Consensus 83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~ 121 (379)
+++|+.|.-.|++|+.++|.+......+..++.+++...
T Consensus 502 qek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d 540 (638)
T KOG1126|consen 502 QEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKD 540 (638)
T ss_pred cchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhh
Confidence 999999999999999999999999999999988888863
No 47
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.23 E-value=4.4e-11 Score=88.06 Aligned_cols=66 Identities=30% Similarity=0.502 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCC
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ-NFTEAVADANRAIELEP 67 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg-~~~eAl~~~~~Al~l~p 67 (379)
|..++..|..++..|+|++|+..|+++|+++|+++.+++++|.||..+| ++.+|+.+++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 6789999999999999999999999999999999999999999999999 79999999999999987
No 48
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.23 E-value=3e-10 Score=99.38 Aligned_cols=110 Identities=19% Similarity=0.217 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT 78 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~---~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~ 78 (379)
+..++..|..+...|++++|+.+|.+++...++. ..+++++|.++.++|++++|+..+.+++.+.|.+..+++.+|.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 4568899999999999999999999999987653 5689999999999999999999999999999999999999999
Q ss_pred HHHhccC--------------HHHHHHHHHHHHhcCCCCh-HHHHHHH
Q 016973 79 ACMKLEE--------------YETAKVALEKGASLAPGDS-RFTNLIK 111 (379)
Q Consensus 79 ~~~~lg~--------------y~~A~~~~~~a~~l~p~~~-~~~~~l~ 111 (379)
+|..+|+ |.+|+.++++++.++|++. .+..|+.
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~ 162 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWLK 162 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHH
Confidence 9999988 6889999999999999874 3444444
No 49
>PRK12370 invasion protein regulator; Provisional
Probab=99.19 E-value=3.2e-10 Score=117.16 Aligned_cols=89 Identities=12% Similarity=0.049 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHH
Q 016973 16 DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEK 95 (379)
Q Consensus 16 g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~ 95 (379)
+++++|+..++++++++|+++.++..+|.++..+|++++|+..|++|+.++|+++.+++.+|.+|..+|++++|+..|++
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34445555555555555555555444555544455555555555555555555555555555555555555555555555
Q ss_pred HHhcCCCCh
Q 016973 96 GASLAPGDS 104 (379)
Q Consensus 96 a~~l~p~~~ 104 (379)
+++++|.+.
T Consensus 398 Al~l~P~~~ 406 (553)
T PRK12370 398 CLKLDPTRA 406 (553)
T ss_pred HHhcCCCCh
Confidence 555555443
No 50
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.18 E-value=4.9e-10 Score=121.64 Aligned_cols=114 Identities=14% Similarity=0.043 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~ 82 (379)
..+...|.++.+.|++++|+..|.+++.++|+++.++.++|.++..+|++++|+..|.+|+.++|+++.+++.+|.++..
T Consensus 610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~ 689 (987)
T PRK09782 610 NAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR 689 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 016973 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEER 116 (379)
Q Consensus 83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 116 (379)
+|++++|+.+|+++++++|++..+...+..+...
T Consensus 690 lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~ 723 (987)
T PRK09782 690 LDDMAATQHYARLVIDDIDNQALITPLTPEQNQQ 723 (987)
T ss_pred CCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHH
Confidence 9999999999999999999987766555554443
No 51
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.4e-10 Score=107.84 Aligned_cols=102 Identities=26% Similarity=0.430 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~----~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la 77 (379)
|..+...||.||+.++|..|+.+|++.|.....+ +.+|.|||.|.+.+|+|..||.|+.+|+.++|.+.++++|-|
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 6788999999999999999999999999985544 678999999999999999999999999999999999999999
Q ss_pred HHHHhccCHHHHHHHHHHHHhcCCCC
Q 016973 78 TACMKLEEYETAKVALEKGASLAPGD 103 (379)
Q Consensus 78 ~~~~~lg~y~~A~~~~~~a~~l~p~~ 103 (379)
.|++.++++++|..+++..+.++-..
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 99999999888888887776665433
No 52
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.18 E-value=1.4e-10 Score=116.18 Aligned_cols=118 Identities=19% Similarity=0.272 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~ 82 (379)
.+|+..|.+|++.++|+.|.-.|++|+.++|.+...+...|..+.++|+.++|+..+++|+.++|.++...|.+|.+++.
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~ 569 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFS 569 (638)
T ss_pred HHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (379)
Q Consensus 83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (379)
+++|++|+..|++..++.|++..+...++++..+++..
T Consensus 570 ~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~ 607 (638)
T KOG1126|consen 570 LGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNT 607 (638)
T ss_pred hcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccc
Confidence 99999999999999999999999999999999988886
No 53
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=1.7e-10 Score=111.92 Aligned_cols=120 Identities=23% Similarity=0.255 Sum_probs=109.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 016973 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (379)
Q Consensus 1 ~A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~ 80 (379)
||.++...|..+|-.|++-.|...|+.+|.++|.+..+|..||.+|...++-++...+|.+|..++|.++.+||.+|+++
T Consensus 325 ~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~ 404 (606)
T KOG0547|consen 325 MAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMR 404 (606)
T ss_pred HHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (379)
Q Consensus 81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (379)
+-+++|++|+..|++|++|+|++.-....+.-+.-++.+.
T Consensus 405 flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~ 444 (606)
T KOG0547|consen 405 FLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKI 444 (606)
T ss_pred HHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999876555555444444443
No 54
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.18 E-value=2e-10 Score=107.15 Aligned_cols=103 Identities=21% Similarity=0.278 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~ 82 (379)
+..+..|..++..|+|..|+..|..|++.+|++..++++||.+|+.+|+-.-|+.|+.+.+++.|++..+...+|.++..
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhcCCCChH
Q 016973 83 LEEYETAKVALEKGASLAPGDSR 105 (379)
Q Consensus 83 lg~y~~A~~~~~~a~~l~p~~~~ 105 (379)
+|++++|...|.+++..+|++..
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~ 141 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGL 141 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcch
Confidence 99999999999999999996654
No 55
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.17 E-value=1.8e-10 Score=97.93 Aligned_cols=96 Identities=21% Similarity=0.209 Sum_probs=89.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 016973 22 YDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP 101 (379)
Q Consensus 22 l~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p 101 (379)
..+|+++++++|++ ++.+|.++.++|++++|+..|.+++.++|.+..+|+.+|.++..+|++++|+.+|++++.++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 46799999999885 667999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHhh
Q 016973 102 GDSRFTNLIKECEERIAEE 120 (379)
Q Consensus 102 ~~~~~~~~l~~~~~~l~~~ 120 (379)
++......++.|...+++.
T Consensus 90 ~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred CCcHHHHHHHHHHHHcCCH
Confidence 9999999999988877765
No 56
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.17 E-value=6.8e-11 Score=90.80 Aligned_cols=82 Identities=27% Similarity=0.406 Sum_probs=73.5
Q ss_pred HcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHH
Q 016973 14 IDDYFELAYDLYSQAIEISPN--SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKV 91 (379)
Q Consensus 14 ~~g~y~~Al~~y~~al~~~p~--~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~ 91 (379)
..|+|+.|+..|++++...|. +..+++.+|.||+++|+|++|+..+++ +.+++.+...++.+|.|++.+|+|++|+.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 368999999999999999995 466788899999999999999999999 88888888999999999999999999999
Q ss_pred HHHHH
Q 016973 92 ALEKG 96 (379)
Q Consensus 92 ~~~~a 96 (379)
.|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99875
No 57
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.17 E-value=1.1e-09 Score=98.11 Aligned_cols=117 Identities=19% Similarity=0.156 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~ 81 (379)
+..++..|..++..|+|++|+..|.+++..+|.+..++..+|.++..+|++++|+..+.+++.++|.+..+++.+|.+++
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred hccCHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHHH
Q 016973 82 KLEEYETAKVALEKGASLA--PGDSRFTNLIKECEERIA 118 (379)
Q Consensus 82 ~lg~y~~A~~~~~~a~~l~--p~~~~~~~~l~~~~~~l~ 118 (379)
.+|++++|+..|++++... +........++.+...++
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 149 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAG 149 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcC
Confidence 9999999999999988754 233334444444444333
No 58
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.17 E-value=5.1e-10 Score=99.57 Aligned_cols=118 Identities=16% Similarity=0.045 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~ 81 (379)
++..++.|.-|+..|++..|...+++||+.+|++..++..||..|.++|+.+.|-+.|++|+.++|++..++.+.|--++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHHh
Q 016973 82 KLEEYETAKVALEKGASL--APGDSRFTNLIKECEERIAE 119 (379)
Q Consensus 82 ~lg~y~~A~~~~~~a~~l--~p~~~~~~~~l~~~~~~l~~ 119 (379)
.+|+|++|...|++|+.. .+.-......+..|..+.++
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq 154 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQ 154 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCC
Confidence 999999999999988864 33444455556666554333
No 59
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.16 E-value=4.9e-10 Score=117.38 Aligned_cols=118 Identities=12% Similarity=-0.005 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~ 81 (379)
++.++..|......|.|++|+.++..++++.|++..++.++|.++.+++++++|+..+++++..+|+++.+++.+|.++.
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~ 165 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWD 165 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 45677778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (379)
Q Consensus 82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~ 119 (379)
++|+|++|+.+|++++..+|++...+..++.+...+++
T Consensus 166 ~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~ 203 (694)
T PRK15179 166 EIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGA 203 (694)
T ss_pred HhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 88888888888888888777777766666665554333
No 60
>PRK12370 invasion protein regulator; Provisional
Probab=99.15 E-value=6.5e-10 Score=114.88 Aligned_cols=119 Identities=15% Similarity=0.038 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~ 81 (379)
+..+...|..+...|++++|+.+|+++++++|+++.+++.+|.++..+|++++|+..++++++++|.++.+++.++.+++
T Consensus 338 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~ 417 (553)
T PRK12370 338 PQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITY 417 (553)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 34677889999999999999999999999999999999999999999999999999999999999999888888888899
Q ss_pred hccCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHHHhh
Q 016973 82 KLEEYETAKVALEKGASLA-PGDSRFTNLIKECEERIAEE 120 (379)
Q Consensus 82 ~lg~y~~A~~~~~~a~~l~-p~~~~~~~~l~~~~~~l~~~ 120 (379)
.+|+|++|+..+++++... |+++.....++.+...+++.
T Consensus 418 ~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~ 457 (553)
T PRK12370 418 YHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKH 457 (553)
T ss_pred hccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCH
Confidence 9999999999999999875 78888888888888777765
No 61
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.15 E-value=8.9e-11 Score=116.00 Aligned_cols=100 Identities=21% Similarity=0.290 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~ 82 (379)
+.....|..|+-.|+|+.|+.+|+.||..+|++..+|.++|.++..-.+..+|+..|.+|++|.|.+..++|++|++|..
T Consensus 431 dvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mN 510 (579)
T KOG1125|consen 431 DVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMN 510 (579)
T ss_pred hHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhh
Confidence 34566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhcCCC
Q 016973 83 LEEYETAKVALEKGASLAPG 102 (379)
Q Consensus 83 lg~y~~A~~~~~~a~~l~p~ 102 (379)
+|.|++|..+|-.|+.+.+.
T Consensus 511 lG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 511 LGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred hhhHHHHHHHHHHHHHhhhc
Confidence 99999999999999999765
No 62
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.14 E-value=1.3e-09 Score=99.80 Aligned_cols=109 Identities=24% Similarity=0.235 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH---HHHH
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA---ELFADRAQASIKLQNFTEAVADANRAIELEPSMSK---AYWR 75 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~---~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~---a~~~ 75 (379)
++.++..|..++..|+|++|+..|.+++..+|.++ .+++.+|.+|+.+|++++|+..|.++++..|+++. +++.
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 56789999999999999999999999999999876 57899999999999999999999999999998766 7999
Q ss_pred HHHHHHhc--------cCHHHHHHHHHHHHhcCCCChHHHHHH
Q 016973 76 KATACMKL--------EEYETAKVALEKGASLAPGDSRFTNLI 110 (379)
Q Consensus 76 la~~~~~l--------g~y~~A~~~~~~a~~l~p~~~~~~~~l 110 (379)
+|.+++.+ |++++|+..|++++..+|++......+
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~ 155 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK 155 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH
Confidence 99999987 899999999999999999987654333
No 63
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.13 E-value=7.5e-10 Score=99.21 Aligned_cols=106 Identities=14% Similarity=0.135 Sum_probs=98.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HhccC--HHHHHH
Q 016973 15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC-MKLEE--YETAKV 91 (379)
Q Consensus 15 ~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~-~~lg~--y~~A~~ 91 (379)
.++.++++..|.++|..+|++..+|+.+|.+|..+|++++|+..|.+|+.++|+++.+++.+|.++ +..|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 567799999999999999999999999999999999999999999999999999999999999985 77788 599999
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973 92 ALEKGASLAPGDSRFTNLIKECEERIAEE 120 (379)
Q Consensus 92 ~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (379)
.|+++++++|++..+...++.+...++..
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~ 160 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADY 160 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCH
Confidence 99999999999999998888887776665
No 64
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.13 E-value=2.5e-09 Score=101.86 Aligned_cols=113 Identities=14% Similarity=0.137 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------------
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM------------ 69 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~------------ 69 (379)
+..++..|..+...|+|++|+..|+++++++|++..+++++|.+++..|++++|+.+|++++.++|++
T Consensus 98 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~ 177 (296)
T PRK11189 98 ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAES 177 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHc
Confidence 46788999999999999999999999999999999999999999999999999999998888876632
Q ss_pred ----------------------------------------------------------HHHHHHHHHHHHhccCHHHHHH
Q 016973 70 ----------------------------------------------------------SKAYWRKATACMKLEEYETAKV 91 (379)
Q Consensus 70 ----------------------------------------------------------~~a~~~la~~~~~lg~y~~A~~ 91 (379)
..+|+++|.++..+|++++|+.
T Consensus 178 ~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~ 257 (296)
T PRK11189 178 KLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAA 257 (296)
T ss_pred cCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 1357788999999999999999
Q ss_pred HHHHHHhcCC-CChHHHHHHHHHH
Q 016973 92 ALEKGASLAP-GDSRFTNLIKECE 114 (379)
Q Consensus 92 ~~~~a~~l~p-~~~~~~~~l~~~~ 114 (379)
+|++++.++| +..+....+-.+.
T Consensus 258 ~~~~Al~~~~~~~~e~~~~~~e~~ 281 (296)
T PRK11189 258 LFKLALANNVYNFVEHRYALLELA 281 (296)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHH
Confidence 9999999997 4444444343333
No 65
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=5.2e-10 Score=108.04 Aligned_cols=113 Identities=19% Similarity=0.269 Sum_probs=93.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHH
Q 016973 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYE 87 (379)
Q Consensus 8 ~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~ 87 (379)
.||-|--.++.+.|+.+|++||.+||....+|...|+=|..+++-..|+..|++|+.++|.+..|||.+|++|.-++-..
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~ 415 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHF 415 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchH
Confidence 46667777788888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973 88 TAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (379)
Q Consensus 88 ~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (379)
=|+.+|++|+.+.|+|+..+..++.|..++.+.
T Consensus 416 YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~ 448 (559)
T KOG1155|consen 416 YALYYFQKALELKPNDSRLWVALGECYEKLNRL 448 (559)
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHhccH
Confidence 888888888888888888888888888777765
No 66
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.11 E-value=2.6e-09 Score=95.56 Aligned_cols=117 Identities=15% Similarity=0.151 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE--PSMSKAYWRKATAC 80 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~--p~~~~a~~~la~~~ 80 (379)
..+...|..++..|++++|+..|.+++...|.+..++.++|.++..+|++++|+..+.+++... +.....++.+|.++
T Consensus 66 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 145 (234)
T TIGR02521 66 LAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCA 145 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 4567788899999999999999999999999988889999999999999999999999988754 45667888889999
Q ss_pred HhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (379)
Q Consensus 81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~ 119 (379)
+.+|++++|...|.+++..+|++......+..+....++
T Consensus 146 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 184 (234)
T TIGR02521 146 LKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQ 184 (234)
T ss_pred HHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCC
Confidence 999999999999999999988887766666666555444
No 67
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.11 E-value=2.8e-09 Score=99.38 Aligned_cols=111 Identities=12% Similarity=0.003 Sum_probs=99.3
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHH
Q 016973 3 TDLEKKAKEA-FIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWR 75 (379)
Q Consensus 3 ~~l~~~g~~~-~~~g~y~~Al~~y~~al~~~p~~---~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~---~~~a~~~ 75 (379)
...+..|..+ +..|+|++|+..|+..+...|++ +.+++.+|.+|+..|+|++|+..|.+++...|+ .+.+++.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 4567788876 67899999999999999999998 579999999999999999999999999999886 5889999
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 016973 76 KATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (379)
Q Consensus 76 la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~ 113 (379)
+|.++..+|++++|+..|+++++..|+.........++
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL 260 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL 260 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence 99999999999999999999999999988665544443
No 68
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.10 E-value=1.7e-09 Score=111.69 Aligned_cols=118 Identities=14% Similarity=0.122 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~ 82 (379)
..++.+||.+|..|++++|..++.++|.++|.++.+|+.+|.||.++|+.++|+...-.|-.++|.+...|.+++....+
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (379)
Q Consensus 83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (379)
+|.+++|..+|.+|++++|.+-.+.-....+..+++..
T Consensus 220 ~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~ 257 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDL 257 (895)
T ss_pred cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChH
Confidence 99999999999999999999977666666665555543
No 69
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.4e-09 Score=105.12 Aligned_cols=118 Identities=17% Similarity=0.148 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~ 82 (379)
.+|--.|..++.+++-..|++.|++|++++|.+..+|+.+|++|.-++.+.=|+-+|++|+.+.|++...|..+|.||..
T Consensus 365 ~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k 444 (559)
T KOG1155|consen 365 SAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEK 444 (559)
T ss_pred HHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 35667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (379)
Q Consensus 83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (379)
+++.++|+.+|.+++.+...+..+.-.++++.+.++..
T Consensus 445 l~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~ 482 (559)
T KOG1155|consen 445 LNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDL 482 (559)
T ss_pred hccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhH
Confidence 99999999999999999988888899999999988876
No 70
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.09 E-value=4.1e-09 Score=91.78 Aligned_cols=103 Identities=18% Similarity=0.210 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT 78 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~---~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~ 78 (379)
+..++..|..++..|+|++|+..|.+++.+.++. +.+++++|.+|..+|++++|+..+.+++.++|....+++.+|.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 4567889999999999999999999999987663 4589999999999999999999999999999999999999999
Q ss_pred HHH-------hccCHH-------HHHHHHHHHHhcCCCCh
Q 016973 79 ACM-------KLEEYE-------TAKVALEKGASLAPGDS 104 (379)
Q Consensus 79 ~~~-------~lg~y~-------~A~~~~~~a~~l~p~~~ 104 (379)
++. .+|+++ +|+..|++++.++|.+.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 999 777766 66666667778888654
No 71
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.09 E-value=1e-09 Score=91.48 Aligned_cols=98 Identities=22% Similarity=0.239 Sum_probs=92.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC
Q 016973 23 DLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPG 102 (379)
Q Consensus 23 ~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~ 102 (379)
..|.+++..+|++..+++.+|.+++..|++++|+..+.+++.++|.++.+++++|.+++.+|++++|..+|++++.++|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHhh
Q 016973 103 DSRFTNLIKECEERIAEE 120 (379)
Q Consensus 103 ~~~~~~~l~~~~~~l~~~ 120 (379)
+......++.+...+++.
T Consensus 84 ~~~~~~~la~~~~~~g~~ 101 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEP 101 (135)
T ss_pred ChHHHHHHHHHHHHcCCH
Confidence 999988888887776664
No 72
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.07 E-value=4.1e-10 Score=84.44 Aligned_cols=73 Identities=26% Similarity=0.374 Sum_probs=67.6
Q ss_pred ccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcC-------CCceeeeccccccccccCcceEEEeCcEEEEEEee
Q 016973 183 FYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP-------GEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAK 255 (379)
Q Consensus 183 W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~-------~~~~~~~~~~L~~~I~p~~s~~~v~~~kiei~L~K 255 (379)
|+|+++.|+|+|+++|+.++++.|.+.++.|.|++... ....|.+.+.|+++|+|+++++++.+..|+|.|.|
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~l~K 80 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLENGVLEITLPK 80 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEECCEEEEEEcC
Confidence 99999999999999999999999999999999998754 24579999999999999999999999999999987
No 73
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.06 E-value=2.8e-09 Score=115.81 Aligned_cols=111 Identities=23% Similarity=0.296 Sum_probs=102.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHH
Q 016973 9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYET 88 (379)
Q Consensus 9 g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~ 88 (379)
+..+...|++++|+..|.+++..+|+ ..++.++|.++.++|++++|+..|.+++.++|+++.+++.+|.++..+|++++
T Consensus 583 a~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 583 HAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 34445569999999999999999996 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973 89 AKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (379)
Q Consensus 89 A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (379)
|+..|+++++++|++..+...++.+...++..
T Consensus 662 Ai~~l~~AL~l~P~~~~a~~nLA~al~~lGd~ 693 (987)
T PRK09782 662 SREMLERAHKGLPDDPALIRQLAYVNQRLDDM 693 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 99999999999999999998888888776664
No 74
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.05 E-value=1e-09 Score=103.53 Aligned_cols=118 Identities=21% Similarity=0.191 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~ 82 (379)
..+...|..+.+.|++++|+.+|+++|..+|++..++..++.+++..|+++++...+.......|.++..+..+|.+|+.
T Consensus 147 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~ 226 (280)
T PF13429_consen 147 RFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQ 226 (280)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcc
Confidence 35678899999999999999999999999999999999999999999999999998888888888888999999999999
Q ss_pred ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (379)
Q Consensus 83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (379)
+|++++|+.+|++++..+|+|+.....++.+....+..
T Consensus 227 lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~ 264 (280)
T PF13429_consen 227 LGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRK 264 (280)
T ss_dssp HT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----
T ss_pred cccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999888877775
No 75
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=2.9e-09 Score=95.42 Aligned_cols=117 Identities=24% Similarity=0.334 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCC----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEI--------SPNS----------AELFADRAQASIKLQNFTEAVADANRAIEL 65 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~--------~p~~----------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l 65 (379)
.+.+.||.+|+.|+|.+|...|..||.. .|.. ..++.|.+.|++..|+|-++++.++..+..
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~ 259 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH 259 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 5778999999999999999999999876 3433 456899999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHhh
Q 016973 66 EPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR-FTNLIKECEERIAEE 120 (379)
Q Consensus 66 ~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~-~~~~l~~~~~~l~~~ 120 (379)
+|.+.+|||++|.++...-+.++|.+.|..+++++|.-.. +...+..+..++.+.
T Consensus 260 ~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~ek 315 (329)
T KOG0545|consen 260 HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAEK 315 (329)
T ss_pred CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998665 445555555555443
No 76
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.04 E-value=7e-10 Score=80.65 Aligned_cols=62 Identities=21% Similarity=0.353 Sum_probs=31.7
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC
Q 016973 42 RAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD 103 (379)
Q Consensus 42 ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~ 103 (379)
+|..++..|+|++|+..|+.++..+|.++.+++.+|.+++.+|++++|+..|+++++++|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 44555555555555555555555555555555555555555555555555555555555544
No 77
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.03 E-value=5.3e-09 Score=94.79 Aligned_cols=116 Identities=19% Similarity=0.155 Sum_probs=109.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Q 016973 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (379)
Q Consensus 5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg 84 (379)
+..+|..++..|+|..|+..+.++....|++..+|..+|.+|.++|++++|...|.+|+++.|+.+.++-++|..|+-.|
T Consensus 103 l~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~g 182 (257)
T COG5010 103 LAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRG 182 (257)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcC
Confidence 44589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973 85 EYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (379)
Q Consensus 85 ~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (379)
+++.|...+..+...-+.+..+...+..+...++..
T Consensus 183 d~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 183 DLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDF 218 (257)
T ss_pred CHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCCh
Confidence 999999999999999888999888888887766665
No 78
>PLN02789 farnesyltranstransferase
Probab=99.02 E-value=6.7e-09 Score=99.68 Aligned_cols=114 Identities=13% Similarity=0.007 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH--HHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 016973 3 TDLEKKAKEAFIDD-YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNF--TEAVADANRAIELEPSMSKAYWRKATA 79 (379)
Q Consensus 3 ~~l~~~g~~~~~~g-~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~--~eAl~~~~~Al~l~p~~~~a~~~la~~ 79 (379)
..+..+|.++...| ++++|+..+++++..+|++..+|.+|+.++.++++. .+++.++.+++.++|.+..+|..+|-+
T Consensus 72 taW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~ 151 (320)
T PLN02789 72 TVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWV 151 (320)
T ss_pred HHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 46677788888887 578888888888888888888888888888888874 678888888888898888999999988
Q ss_pred HHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 016973 80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER 116 (379)
Q Consensus 80 ~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 116 (379)
+..+|+|++|+.++.++++.+|.+..++..+..+...
T Consensus 152 l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~ 188 (320)
T PLN02789 152 LRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITR 188 (320)
T ss_pred HHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHh
Confidence 8888889999999999999988888877777666443
No 79
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.02 E-value=4.7e-09 Score=110.51 Aligned_cols=104 Identities=13% Similarity=0.093 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 016973 4 DLEKKAKEAFIDDYFEL----AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA 79 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~----Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~ 79 (379)
.++..|..++..|++++ |+..|++++.++|+++.++..+|.++..+|++++|+..+++++.++|+++.+++.+|.+
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~ 327 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34556666666676664 66667777777777666677777777777777777777777777777766667777777
Q ss_pred HHhccCHHHHHHHHHHHHhcCCCChHHH
Q 016973 80 CMKLEEYETAKVALEKGASLAPGDSRFT 107 (379)
Q Consensus 80 ~~~lg~y~~A~~~~~~a~~l~p~~~~~~ 107 (379)
|..+|++++|+..|++++..+|++....
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~ 355 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWN 355 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHH
Confidence 7777777777777777766666655433
No 80
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.02 E-value=1.3e-09 Score=79.26 Aligned_cols=65 Identities=22% Similarity=0.320 Sum_probs=60.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Q 016973 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS 70 (379)
Q Consensus 6 ~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~ 70 (379)
+.+|..++..|+|++|+.+|++++..+|.++.+++.+|.|+..+|++++|+..|++++.++|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999875
No 81
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.01 E-value=5.5e-09 Score=110.03 Aligned_cols=114 Identities=12% Similarity=0.045 Sum_probs=105.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973 7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTE----AVADANRAIELEPSMSKAYWRKATACMK 82 (379)
Q Consensus 7 ~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~e----Al~~~~~Al~l~p~~~~a~~~la~~~~~ 82 (379)
..|..++..|++++|+..|.+++..+|.++.+++++|.+|..+|++++ |+..|++++.++|++..+++.+|.++..
T Consensus 217 ~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~ 296 (656)
T PRK15174 217 LAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR 296 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 347788999999999999999999999999999999999999999996 8999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (379)
Q Consensus 83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (379)
+|++++|+..|++++.++|++..+...++.+...+++.
T Consensus 297 ~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~ 334 (656)
T PRK15174 297 TGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQY 334 (656)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 99999999999999999999998888887776655544
No 82
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=99.01 E-value=1.1e-08 Score=83.24 Aligned_cols=101 Identities=27% Similarity=0.309 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHH
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS----MSKAYWRKAT 78 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~----~~~a~~~la~ 78 (379)
.++-.+|..+...|+.+.|++.|.++|.+-|.++.+|.+||.++...|+.++|+.++.+|+++... -..+|..+|.
T Consensus 44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ 123 (175)
T KOG4555|consen 44 RELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGL 123 (175)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 456678999999999999999999999999999999999999999999999999999999999753 3578999999
Q ss_pred HHHhccCHHHHHHHHHHHHhcCCCC
Q 016973 79 ACMKLEEYETAKVALEKGASLAPGD 103 (379)
Q Consensus 79 ~~~~lg~y~~A~~~~~~a~~l~p~~ 103 (379)
+|..+|+-+.|...|+.+.++....
T Consensus 124 lyRl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 124 LYRLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HHHHhCchHHHHHhHHHHHHhCCHH
Confidence 9999999999999999999887643
No 83
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=99.00 E-value=1e-08 Score=85.63 Aligned_cols=107 Identities=22% Similarity=0.238 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWR 75 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~---~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~---~~a~~~ 75 (379)
+..++..|..+++.|+|.+|++.|+.+....|.. ..+.+.++.+|++.++|.+|+..+++-++++|.+ .-++|.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 4689999999999999999999999999998876 5788999999999999999999999999999865 568999
Q ss_pred HHHHHHhccC---------------HHHHHHHHHHHHhcCCCChHHHH
Q 016973 76 KATACMKLEE---------------YETAKVALEKGASLAPGDSRFTN 108 (379)
Q Consensus 76 la~~~~~lg~---------------y~~A~~~~~~a~~l~p~~~~~~~ 108 (379)
+|.+++.+.. ...|...|++.++..|++.-+..
T Consensus 90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d 137 (142)
T PF13512_consen 90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD 137 (142)
T ss_pred HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence 9999999987 88999999999999998875543
No 84
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=98.99 E-value=2.3e-09 Score=90.87 Aligned_cols=85 Identities=18% Similarity=0.213 Sum_probs=71.0
Q ss_pred ccccccCCeEEEEEEe-CCC-CCCceEEEEeecEEEEEEEcCCCceeeeccccccccccCcceEEEeCcEEEEEEeecCC
Q 016973 181 HEFYQKPEEVVVTVFA-KGI-PAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP 258 (379)
Q Consensus 181 ~~W~Qt~~~V~i~i~~-k~~-~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~ 258 (379)
|.|+||-+.|.|.|.+ +|. +..+|.|.+..++|.|.++ |.+-.+..+|++.|+++.|.|+|-+.++.|++.|+..
T Consensus 21 y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~hI~V~~k---g~~~ildG~L~~~vk~des~WtiEd~k~i~i~l~K~~ 97 (179)
T KOG2265|consen 21 YTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQSKHIKVGLK---GQPPILDGELSHSVKVDESTWTIEDGKMIVILLKKSN 97 (179)
T ss_pred eeeeeehhheEEEeecCCCCcccceEEEEeeeeEEEEecC---CCCceecCccccccccccceEEecCCEEEEEEeeccc
Confidence 7799999999999855 565 7899999999999999876 5556788999999999999999999976666655544
Q ss_pred --CCCCccccCC
Q 016973 259 --IQWSSLEFSK 268 (379)
Q Consensus 259 --~~W~~L~~~~ 268 (379)
..|.+|...+
T Consensus 98 ~~eWW~~ll~ge 109 (179)
T KOG2265|consen 98 KMEWWDSLLEGE 109 (179)
T ss_pred hHHHHHHHHcCC
Confidence 7899987653
No 85
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=2.4e-08 Score=92.67 Aligned_cols=116 Identities=21% Similarity=0.172 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ---NFTEAVADANRAIELEPSMSKAYWRKAT 78 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg---~~~eAl~~~~~Al~l~p~~~~a~~~la~ 78 (379)
++-|...|..|+..|++..|+..|.+|+++.|+|++.+..+|.+++... .-.++...+.+++.++|.+..+.+.+|.
T Consensus 156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~ 235 (287)
T COG4235 156 AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAF 235 (287)
T ss_pred chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 3568889999999999999999999999999999999999999988774 3578999999999999999999999999
Q ss_pred HHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 016973 79 ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (379)
Q Consensus 79 ~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l 117 (379)
.+|..|+|.+|...++..+.+.|.+..-...+.+.....
T Consensus 236 ~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~~ 274 (287)
T COG4235 236 AAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIARA 274 (287)
T ss_pred HHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHH
Confidence 999999999999999999999998876555555443333
No 86
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.97 E-value=9.8e-09 Score=91.48 Aligned_cols=114 Identities=15% Similarity=0.105 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE--PSMSKAYWRKATAC 80 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~--p~~~~a~~~la~~~ 80 (379)
..+..+|..|...|+.+.|-+.|.+||.++|++.+++.|.|..++.+|+|++|...|++|+..- +..+..+-++|.|.
T Consensus 70 ~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Ca 149 (250)
T COG3063 70 LAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCA 149 (250)
T ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHH
Confidence 4567789999999999999999999999999999999999999999999999999999998652 45678999999999
Q ss_pred HhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 016973 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER 116 (379)
Q Consensus 81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 116 (379)
++.|+++.|...|+++++++|+.+.....+.+.+..
T Consensus 150 l~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~ 185 (250)
T COG3063 150 LKAGQFDQAEEYLKRALELDPQFPPALLELARLHYK 185 (250)
T ss_pred hhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHh
Confidence 999999999999999999999998766666555443
No 87
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.95 E-value=1.7e-08 Score=105.88 Aligned_cols=117 Identities=13% Similarity=0.033 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~ 81 (379)
+.+....|..+.+.+.+++|+..++++|..+|+++.+++.+|.|+.++|+|++|+..|++++..+|++..++..+|.++.
T Consensus 120 ~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~ 199 (694)
T PRK15179 120 SEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLT 199 (694)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHH
Q 016973 82 KLEEYETAKVALEKGASLAPG-DSRFTNLIKECEERIA 118 (379)
Q Consensus 82 ~lg~y~~A~~~~~~a~~l~p~-~~~~~~~l~~~~~~l~ 118 (379)
.+|+.++|..+|++++.+... ...+...+..+...+.
T Consensus 200 ~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 237 (694)
T PRK15179 200 RRGALWRARDVLQAGLDAIGDGARKLTRRLVDLNADLA 237 (694)
T ss_pred HcCCHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHH
Confidence 999999999999999998654 3334455555544433
No 88
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.94 E-value=1.5e-08 Score=92.71 Aligned_cols=118 Identities=15% Similarity=0.077 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHc--------cCHHHHHHHHHHHHHhCCCCHH
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAE---LFADRAQASIKL--------QNFTEAVADANRAIELEPSMSK 71 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~---~~~~ra~~~~~l--------g~~~eAl~~~~~Al~l~p~~~~ 71 (379)
..++..|..++..|++++|+..|+++++.+|+++. +++.+|.|++.+ |++++|+..+.+++..+|.+..
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 150 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEY 150 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChh
Confidence 35688999999999999999999999999998765 789999999987 8899999999999999998754
Q ss_pred HH-----------------HHHHHHHHhccCHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHHHhh
Q 016973 72 AY-----------------WRKATACMKLEEYETAKVALEKGASLAPGDS---RFTNLIKECEERIAEE 120 (379)
Q Consensus 72 a~-----------------~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~---~~~~~l~~~~~~l~~~ 120 (379)
++ +.+|.+|+..|++.+|+..|++++...|+++ .+...+..+...+++.
T Consensus 151 ~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~ 219 (235)
T TIGR03302 151 APDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLK 219 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCH
Confidence 32 4678999999999999999999999988764 5666777777766664
No 89
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.94 E-value=2.9e-09 Score=102.58 Aligned_cols=118 Identities=19% Similarity=0.199 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~ 81 (379)
+.++.++|+..|.+|+|+.|...|.+||.-+....+++++.|..+..+|++++|+.+|-+...+--++.++++.++.+|.
T Consensus 490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye 569 (840)
T KOG2003|consen 490 AAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYE 569 (840)
T ss_pred HHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999988888889999999999999
Q ss_pred hccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (379)
Q Consensus 82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~ 119 (379)
.+.+..+|+++|.++..+-|+++.++.-++.+..+-+.
T Consensus 570 ~led~aqaie~~~q~~slip~dp~ilskl~dlydqegd 607 (840)
T KOG2003|consen 570 LLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGD 607 (840)
T ss_pred HhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccc
Confidence 99999999999999999999999988888777655443
No 90
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.94 E-value=2.2e-08 Score=107.33 Aligned_cols=112 Identities=11% Similarity=0.100 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~ 82 (379)
..+...|..+...|++++|+.+|+++|..+|.++.++..+|.++...|++++|+..+.+++..+|.+.. ++.+|.++..
T Consensus 50 ~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~ 128 (765)
T PRK10049 50 RGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKR 128 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH
Confidence 457889999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 016973 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEE 115 (379)
Q Consensus 83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 115 (379)
.|++++|+..|+++++++|++..+...+..+..
T Consensus 129 ~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~ 161 (765)
T PRK10049 129 AGRHWDELRAMTQALPRAPQTQQYPTEYVQALR 161 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999999999999988777766544
No 91
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.91 E-value=4e-08 Score=90.13 Aligned_cols=111 Identities=15% Similarity=0.127 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRK 76 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~---~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~---~~~a~~~l 76 (379)
+.+++.|..++..|+|..|...|..-|...|++ +.++|.+|.|++.+|+|.+|...|..+++-.|. -++++|.+
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 558999999999999999999999999999987 689999999999999999999999999999875 46889999
Q ss_pred HHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 016973 77 ATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (379)
Q Consensus 77 a~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~ 113 (379)
|.|+.++|+.++|...|+++.+..|+..........+
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~ 258 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVAL 258 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 9999999999999999999999999998776555444
No 92
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.91 E-value=3.1e-08 Score=96.76 Aligned_cols=117 Identities=15% Similarity=0.182 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l 83 (379)
..+..+..++..|++++|+..++..+...|+|+.++..++.+++..++..+|++.+.+++.++|..+...+.+|.+|+..
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~ 387 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKG 387 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhc
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (379)
Q Consensus 84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (379)
|++.+|+..+...+.-+|+++..+..+++....++..
T Consensus 388 g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 388 GKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNR 424 (484)
T ss_pred CChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCch
Confidence 9999999999999999999999999999999988875
No 93
>PLN02789 farnesyltranstransferase
Probab=98.90 E-value=3.2e-08 Score=95.02 Aligned_cols=110 Identities=15% Similarity=0.052 Sum_probs=101.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCH--H
Q 016973 11 EAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ-NFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY--E 87 (379)
Q Consensus 11 ~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg-~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y--~ 87 (379)
++...+.+++|+.+++++|.++|.+..+|..|+.++..+| .+++++..+.+++..+|.+..+|+.++.++..+|+. +
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhH
Confidence 4566889999999999999999999999999999999999 689999999999999999999999999999999974 7
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973 88 TAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (379)
Q Consensus 88 ~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (379)
+++.++.++++++|.+..++..++.+...++..
T Consensus 126 ~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~ 158 (320)
T PLN02789 126 KELEFTRKILSLDAKNYHAWSHRQWVLRTLGGW 158 (320)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhH
Confidence 889999999999999999999888888877664
No 94
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.90 E-value=2.7e-08 Score=106.66 Aligned_cols=116 Identities=22% Similarity=0.182 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~ 82 (379)
..+...|..++..|++++|+..|.+++..+|.+..+++.+|.+++..|++++|+..+.+++..+|.+..+++.+|.+++.
T Consensus 126 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (899)
T TIGR02917 126 ELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLS 205 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 016973 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (379)
Q Consensus 83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~ 118 (379)
+|++++|+..|++++.++|++......+..+....+
T Consensus 206 ~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g 241 (899)
T TIGR02917 206 LGNIELALAAYRKAIALRPNNPAVLLALATILIEAG 241 (899)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999998887766666554433
No 95
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.87 E-value=1.1e-07 Score=85.62 Aligned_cols=119 Identities=27% Similarity=0.250 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWR 75 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~---~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~---~~a~~~ 75 (379)
++.++..|..++..|+|.+|+..|++++...|.+ ..+.+.+|.++++.|+|.+|+..+++.+...|++ ..++|.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 5689999999999999999999999999998876 6789999999999999999999999999999875 569999
Q ss_pred HHHHHHhccC-----------HHHHHHHHHHHHhcCCCChH---HHHHHHHHHHHHHhh
Q 016973 76 KATACMKLEE-----------YETAKVALEKGASLAPGDSR---FTNLIKECEERIAEE 120 (379)
Q Consensus 76 la~~~~~lg~-----------y~~A~~~~~~a~~l~p~~~~---~~~~l~~~~~~l~~~ 120 (379)
+|.+++.+.+ ..+|+..|+..+...|+..- +...+..|...|...
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~ 143 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEH 143 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHH
Confidence 9999877643 45899999999999999875 445555666555543
No 96
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.87 E-value=1.9e-08 Score=85.54 Aligned_cols=92 Identities=11% Similarity=0.103 Sum_probs=86.2
Q ss_pred HHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHH
Q 016973 29 IEIS-PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT 107 (379)
Q Consensus 29 l~~~-p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~ 107 (379)
..+. ++..+.++.+|..++..|++++|...|..+..++|.+...|+.+|.|+..+|+|.+|+.+|.++..++|+++...
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~ 106 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAP 106 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 3445 667788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 016973 108 NLIKECEERIAEE 120 (379)
Q Consensus 108 ~~l~~~~~~l~~~ 120 (379)
...+.|...+++.
T Consensus 107 ~~ag~c~L~lG~~ 119 (157)
T PRK15363 107 WAAAECYLACDNV 119 (157)
T ss_pred HHHHHHHHHcCCH
Confidence 9999999888776
No 97
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.86 E-value=4.1e-08 Score=109.85 Aligned_cols=110 Identities=16% Similarity=0.221 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAE--------------LFADRAQASIKLQNFTEAVADANRAIELEPSM 69 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~--------------~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~ 69 (379)
.+...|.+++..|++++|+.+|.+++..+|.+.. .+..+|.++...|++++|+..|.+++.++|.+
T Consensus 305 a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~ 384 (1157)
T PRK11447 305 ALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTD 384 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 4455566666666666666666666666555421 12334555566666666666666666666666
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 016973 70 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (379)
Q Consensus 70 ~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~ 113 (379)
..+++.+|.++..+|++++|+.+|+++++++|++..+...+..+
T Consensus 385 ~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l 428 (1157)
T PRK11447 385 SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANL 428 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 77778888888888888888888888888888887665555444
No 98
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.84 E-value=5.2e-08 Score=109.05 Aligned_cols=110 Identities=15% Similarity=0.201 Sum_probs=73.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH--------
Q 016973 7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT-------- 78 (379)
Q Consensus 7 ~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~-------- 78 (379)
..|..++..|++++|+.+|++++..+|.+..+++.+|.+|..+|++++|+..|++++.++|.+..++..++.
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~ 435 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPE 435 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHH
Confidence 446667777777777777777777777777777777777777777777777777777777766555443333
Q ss_pred ----------------------------------HHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 016973 79 ----------------------------------ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER 116 (379)
Q Consensus 79 ----------------------------------~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 116 (379)
++...|++++|+..|+++++++|++..+...++.+...
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQ 507 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 33345677777777777777777766655555555443
No 99
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.83 E-value=2.6e-08 Score=73.91 Aligned_cols=67 Identities=28% Similarity=0.482 Sum_probs=37.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 016973 10 KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK 76 (379)
Q Consensus 10 ~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~l 76 (379)
..++..++|+.|+.++++++..+|.++.+++.+|.|++++|++.+|+.++++++.+.|+...+...+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 3455555555555555555555555555555555555555555555555555555555555444433
No 100
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.83 E-value=8.5e-08 Score=94.24 Aligned_cols=99 Identities=15% Similarity=0.180 Sum_probs=64.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcc
Q 016973 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM-SKAYWRKATACMKLE 84 (379)
Q Consensus 6 ~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~-~~a~~~la~~~~~lg 84 (379)
...|..++..|++++|+..|.+++..+|.+..+++.+|.+|.+.|++++|+..+.+++..+|.+ ..++..++.+|..+|
T Consensus 184 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 263 (389)
T PRK11788 184 CELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALG 263 (389)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcC
Confidence 3455566666666666666666666666666666666666666666666666666666666554 345566666666666
Q ss_pred CHHHHHHHHHHHHhcCCCCh
Q 016973 85 EYETAKVALEKGASLAPGDS 104 (379)
Q Consensus 85 ~y~~A~~~~~~a~~l~p~~~ 104 (379)
++++|+..+++++.++|+..
T Consensus 264 ~~~~A~~~l~~~~~~~p~~~ 283 (389)
T PRK11788 264 DEAEGLEFLRRALEEYPGAD 283 (389)
T ss_pred CHHHHHHHHHHHHHhCCCch
Confidence 66666666666666666554
No 101
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.83 E-value=1.6e-08 Score=75.00 Aligned_cols=71 Identities=27% Similarity=0.418 Sum_probs=65.9
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 016973 43 AQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (379)
Q Consensus 43 a~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~ 113 (379)
..+|++.++|++|+.++++++.++|.++.+++.+|.+++.+|+|.+|+..|++++++.|++.......+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l 72 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML 72 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence 56789999999999999999999999999999999999999999999999999999999999877666543
No 102
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.83 E-value=6.1e-08 Score=103.91 Aligned_cols=113 Identities=16% Similarity=0.187 Sum_probs=71.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Q 016973 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (379)
Q Consensus 5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg 84 (379)
+...|..+...|++++|+..|++++..+|+++.++.++|.++..+|+ .+|+..+++++.+.|+++..+..+|.+++.+|
T Consensus 773 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 851 (899)
T TIGR02917 773 RTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKG 851 (899)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 44555666666666666666666666666666666666666666666 55666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 016973 85 EYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (379)
Q Consensus 85 ~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~ 118 (379)
++++|+..|+++++++|.++.+...+..+....+
T Consensus 852 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g 885 (899)
T TIGR02917 852 EADRALPLLRKAVNIAPEAAAIRYHLALALLATG 885 (899)
T ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC
Confidence 6666666666666666666666555555544433
No 103
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.82 E-value=1.2e-08 Score=74.72 Aligned_cols=65 Identities=20% Similarity=0.216 Sum_probs=38.8
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 016973 13 FIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77 (379)
Q Consensus 13 ~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la 77 (379)
+..|+|++|+..|++++..+|++..+++.+|.||++.|++++|...+.+++..+|+++.++..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 45566666666666666666666666666666666666666666666666666665555554444
No 104
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.82 E-value=2e-07 Score=86.13 Aligned_cols=119 Identities=18% Similarity=0.137 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAEL---FADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWR 75 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~---~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~---~~a~~~ 75 (379)
++.++..|..++..|+|++|+..|.+++...|....+ .+.+|.+|+++++|++|+..+++.+.++|++ +.++|.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM 111 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence 4568899999999999999999999999999998655 4899999999999999999999999999864 678999
Q ss_pred HHHHHHhccC------------------HHHHHHHHHHHHhcCCCChH---HHHHHHHHHHHHHhh
Q 016973 76 KATACMKLEE------------------YETAKVALEKGASLAPGDSR---FTNLIKECEERIAEE 120 (379)
Q Consensus 76 la~~~~~lg~------------------y~~A~~~~~~a~~l~p~~~~---~~~~l~~~~~~l~~~ 120 (379)
+|.+++.+++ ..+|+..|++.++..|+..- +...+..|..+|...
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~ 177 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKY 177 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHH
Confidence 9999766651 35788999999999998764 455556666665554
No 105
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.81 E-value=9.7e-08 Score=102.48 Aligned_cols=107 Identities=17% Similarity=0.066 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l 83 (379)
.+...|..+...|++++|+.+|++++...|.+..+++.+|.++..+|++++|+..+++++.++|++..+++.+|.++..+
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~ 440 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDL 440 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhcCCCChHHHHHH
Q 016973 84 EEYETAKVALEKGASLAPGDSRFTNLI 110 (379)
Q Consensus 84 g~y~~A~~~~~~a~~l~p~~~~~~~~l 110 (379)
|+|++|...++++++..|+++.+...-
T Consensus 441 ~~~~~A~~~~~~ll~~~Pd~~~~~~~~ 467 (765)
T PRK10049 441 QEWRQMDVLTDDVVAREPQDPGVQRLA 467 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999999999999999999765443
No 106
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.81 E-value=8.2e-08 Score=94.33 Aligned_cols=116 Identities=14% Similarity=0.183 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHH
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM-----SKAYWRKAT 78 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~-----~~a~~~la~ 78 (379)
.+...|..++..|+++.|+..|.+++..+|.+..++..++.++.+.|++++|+..+.+++..+|.. ...++.+|.
T Consensus 109 ~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~ 188 (389)
T PRK11788 109 ALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQ 188 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 355667788888888888888888888777777777888888888888888888888887777654 234566777
Q ss_pred HHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973 79 ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (379)
Q Consensus 79 ~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~ 119 (379)
++...|++++|+..|+++++++|++......+..+....++
T Consensus 189 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 229 (389)
T PRK11788 189 QALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGD 229 (389)
T ss_pred HHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCC
Confidence 77888888888888888888877776666666665555444
No 107
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.79 E-value=7.1e-08 Score=81.93 Aligned_cols=92 Identities=23% Similarity=0.177 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWRKA 77 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~---~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~---~~a~~~la 77 (379)
..+......+..+++..+...+++.+..+|+. ..+.+.+|.+++..|+|++|+..|..++...++. ..+.+++|
T Consensus 13 ~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 13 ALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 34444444445555555555555555555554 3344445555555555555555555555544322 23455555
Q ss_pred HHHHhccCHHHHHHHHHH
Q 016973 78 TACMKLEEYETAKVALEK 95 (379)
Q Consensus 78 ~~~~~lg~y~~A~~~~~~ 95 (379)
.+++.+|+|++|+..++.
T Consensus 93 ~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHHHHcCCHHHHHHHHHh
Confidence 555555555555555533
No 108
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=4.4e-08 Score=96.91 Aligned_cols=112 Identities=19% Similarity=0.217 Sum_probs=98.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC----C---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 016973 5 LEKKAKEAFIDDYFELAYDLYSQAIEISP----N---SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77 (379)
Q Consensus 5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p----~---~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la 77 (379)
+...|..+|..+.|.+|+.+|..++...+ . -...+.++|+++.+++.|++||..|++++.+.|.++.+|-.+|
T Consensus 417 ~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig 496 (611)
T KOG1173|consen 417 LHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIG 496 (611)
T ss_pred hhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHH
Confidence 45678889999999999999999984421 1 2456899999999999999999999999999999999999999
Q ss_pred HHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 016973 78 TACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER 116 (379)
Q Consensus 78 ~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 116 (379)
.+|..+|+++.|+.+|.+++.++|++......+..+-+.
T Consensus 497 ~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 497 YIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 999999999999999999999999998877777765443
No 109
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.79 E-value=4.7e-08 Score=99.69 Aligned_cols=103 Identities=15% Similarity=0.150 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHH
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVA--DANRAIELEPSMSKAYWRKATAC 80 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~--~~~~Al~l~p~~~~a~~~la~~~ 80 (379)
..++..|..+...|.+.+|.++|..|+.++|+++.....+|.|+...|+-.-|.. .+..|++++|.++++||.+|.++
T Consensus 685 ~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~ 764 (799)
T KOG4162|consen 685 SVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVF 764 (799)
T ss_pred HHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 4567888999999999999999999999999999999999999999987666666 88899999999999999999999
Q ss_pred HhccCHHHHHHHHHHHHhcCCCChH
Q 016973 81 MKLEEYETAKVALEKGASLAPGDSR 105 (379)
Q Consensus 81 ~~lg~y~~A~~~~~~a~~l~p~~~~ 105 (379)
..+|+.++|..+|+.|+++.+.+|-
T Consensus 765 k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 765 KKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHccchHHHHHHHHHHHhhccCCCc
Confidence 9999999999999999998887763
No 110
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.77 E-value=1.9e-07 Score=87.58 Aligned_cols=116 Identities=17% Similarity=0.182 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l 83 (379)
.+..+...++..|++..|+...++.|++.|=++.++..||.||...|....||.|+..+-++..++.+.+|.++..+|..
T Consensus 157 ~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~v 236 (504)
T KOG0624|consen 157 VLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTV 236 (504)
T ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhh
Confidence 35567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (379)
Q Consensus 84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~ 119 (379)
|+.+.++...+.|++++|++........++.+..+.
T Consensus 237 gd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~ 272 (504)
T KOG0624|consen 237 GDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKS 272 (504)
T ss_pred hhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHH
Confidence 999999999999999999998766555555444433
No 111
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.75 E-value=3.1e-08 Score=72.38 Aligned_cols=68 Identities=21% Similarity=0.344 Sum_probs=61.9
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 016973 46 SIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (379)
Q Consensus 46 ~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~ 113 (379)
+++.|+|++|+..|.+++..+|++..+++.+|.||+.+|++++|...+.+++..+|+++.+...++++
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 46789999999999999999999999999999999999999999999999999999988877766653
No 112
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.75 E-value=2.9e-07 Score=75.49 Aligned_cols=96 Identities=21% Similarity=0.048 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRK 76 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~---~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~---~~~a~~~l 76 (379)
+.+++.|..+-..|+.++|+.+|.+++...... ..+++.+|.+|..+|++++|+..++.++...|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 568999999999999999999999999975444 568999999999999999999999999999888 78888889
Q ss_pred HHHHHhccCHHHHHHHHHHHHh
Q 016973 77 ATACMKLEEYETAKVALEKGAS 98 (379)
Q Consensus 77 a~~~~~lg~y~~A~~~~~~a~~ 98 (379)
+.+++.+|++++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999877664
No 113
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.74 E-value=1.3e-07 Score=81.55 Aligned_cols=98 Identities=19% Similarity=0.312 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccC--
Q 016973 18 FELAYDLYSQAIEISPNSAELFADRAQASIKLQ----------NFTEAVADANRAIELEPSMSKAYWRKATACMKLEE-- 85 (379)
Q Consensus 18 y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg----------~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~-- 85 (379)
|+.|.+.|......+|.+++.+++-|.+++.+. .+++|+.-|+.|+.++|+...+++.+|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 678999999999999999999999999998873 35778999999999999999999999999998775
Q ss_pred ---------HHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 016973 86 ---------YETAKVALEKGASLAPGDSRFTNLIKECEE 115 (379)
Q Consensus 86 ---------y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 115 (379)
|++|..+|++|...+|++..+...+..+.+
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAK 125 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence 789999999999999999998888877654
No 114
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.74 E-value=8.9e-08 Score=93.57 Aligned_cols=83 Identities=22% Similarity=0.229 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~ 81 (379)
+..++.+|.+++..|+|++|+..|+++|.++|.++.+|+++|.+|+.+|+|++|+.+|.+++.++|.+..++..++.|..
T Consensus 36 ~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 36 AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred hcc
Q 016973 82 KLE 84 (379)
Q Consensus 82 ~lg 84 (379)
.+.
T Consensus 116 kl~ 118 (356)
T PLN03088 116 KIA 118 (356)
T ss_pred HHH
Confidence 763
No 115
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.70 E-value=7.5e-08 Score=95.57 Aligned_cols=74 Identities=18% Similarity=0.144 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHH
Q 016973 37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLI 110 (379)
Q Consensus 37 ~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l 110 (379)
+++..+|.+|+..|+|++|+.||+.||...|++...|.|||-.+..-.+.++|+.+|.+|++|.|+...++..+
T Consensus 431 dvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNl 504 (579)
T KOG1125|consen 431 DVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNL 504 (579)
T ss_pred hHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhh
Confidence 33444444444456666666666666666666666666666666666666666666666666666654433333
No 116
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=5e-07 Score=81.70 Aligned_cols=115 Identities=19% Similarity=0.194 Sum_probs=72.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------------------------HHHHHHHHHHHHHccC
Q 016973 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNS----------------------------------AELFADRAQASIKLQN 51 (379)
Q Consensus 6 ~~~g~~~~~~g~y~~Al~~y~~al~~~p~~----------------------------------~~~~~~ra~~~~~lg~ 51 (379)
.-.|..+-..|.|++|+++|+..|+.+|.+ .++|..+|.+|+.+|+
T Consensus 90 ~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~ 169 (289)
T KOG3060|consen 90 KLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGD 169 (289)
T ss_pred HHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhH
Confidence 345667777778888888888777777766 5556666666666666
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc---CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973 52 FTEAVADANRAIELEPSMSKAYWRKATACMKLE---EYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (379)
Q Consensus 52 ~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg---~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (379)
|..|.=|++..+-+.|.++..+.|+|.++|-+| ++..|..+|.++++++|.+...+..+-.|-..+.+.
T Consensus 170 f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~~ 241 (289)
T KOG3060|consen 170 FEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQI 241 (289)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666665544 344566666666666665555555555555555543
No 117
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.68 E-value=8.9e-08 Score=93.81 Aligned_cols=64 Identities=19% Similarity=0.183 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHHh
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAEL---FADRAQASIKLQNFTEAVADANRAIEL 65 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~---~~~ra~~~~~lg~~~eAl~~~~~Al~l 65 (379)
+..++++|..++..|+|++|+.+|+++|+++|++..+ |+++|.||.++|++++|+.++.+|+++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4566777777777777777777777777777777643 777777777777777777777777776
No 118
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.66 E-value=1.4e-08 Score=95.23 Aligned_cols=111 Identities=32% Similarity=0.420 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~ 81 (379)
|.+...++..++..|.++.|++.|+.+|.++|.+..+|..|+.+++++++...|+++|..|+.++|+....|-.+|.+..
T Consensus 114 a~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~r 193 (377)
T KOG1308|consen 114 ANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAER 193 (377)
T ss_pred HHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHH
Confidence 56677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 016973 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (379)
Q Consensus 82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~ 113 (379)
.+|++.+|..+|+.+.+++-+. ..-.|+..+
T Consensus 194 llg~~e~aa~dl~~a~kld~dE-~~~a~lKeV 224 (377)
T KOG1308|consen 194 LLGNWEEAAHDLALACKLDYDE-ANSATLKEV 224 (377)
T ss_pred HhhchHHHHHHHHHHHhccccH-HHHHHHHHh
Confidence 9999999999999999997643 233444443
No 119
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.66 E-value=5e-07 Score=92.23 Aligned_cols=102 Identities=22% Similarity=0.175 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHH---------------------------------
Q 016973 3 TDLEKKAKEAFIDDY---FELAYDLYSQAIEISPNSAELFADRAQAS--------------------------------- 46 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~---y~~Al~~y~~al~~~p~~~~~~~~ra~~~--------------------------------- 46 (379)
-.++.+|..++..++ +..|+.+|++|++++|+++.++..++.||
T Consensus 340 y~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~ 419 (517)
T PRK10153 340 LTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVL 419 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCC
Confidence 356777877776655 77888888899888888865555544443
Q ss_pred -----------HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChH
Q 016973 47 -----------IKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR 105 (379)
Q Consensus 47 -----------~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~ 105 (379)
...|++++|...+++|+.++| +..+|+.+|.++...|++++|++.|++|+.++|.++.
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 233666666777777777776 3566777777777777777777777777777776664
No 120
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.65 E-value=2.4e-07 Score=80.63 Aligned_cols=111 Identities=14% Similarity=0.096 Sum_probs=95.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHh
Q 016973 8 KAKEAFIDDYFELAYDLYSQAIEISPNS--AELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRKATACMK 82 (379)
Q Consensus 8 ~g~~~~~~g~y~~Al~~y~~al~~~p~~--~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~---~~~a~~~la~~~~~ 82 (379)
+.+.+|-...|..+...+...+..++.. ..+++++|.++..+|++++|+..|.+|+.+.++ .+.+++++|.+|..
T Consensus 5 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~ 84 (168)
T CHL00033 5 QRNDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS 84 (168)
T ss_pred cccccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH
Confidence 4567788888999999998887776665 677899999999999999999999999999765 34689999999999
Q ss_pred ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 016973 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (379)
Q Consensus 83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~ 118 (379)
+|++++|+.+|++++.++|........+..+...++
T Consensus 85 ~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 85 NGEHTKALEYYFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 999999999999999999998887777777766444
No 121
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.64 E-value=1.6e-07 Score=88.48 Aligned_cols=115 Identities=20% Similarity=0.245 Sum_probs=93.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 016973 6 EKKAKEAFIDDYFELAYDLYSQAIEIS--PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (379)
Q Consensus 6 ~~~g~~~~~~g~y~~Al~~y~~al~~~--p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l 83 (379)
......++..++++++...+.++.... +.++.+|+.+|.++.+.|+.++|+.++.+|+.++|++..+...++.++..+
T Consensus 114 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~ 193 (280)
T PF13429_consen 114 LSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDM 193 (280)
T ss_dssp ----H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC
Confidence 345567889999999999999987665 677899999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (379)
Q Consensus 84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (379)
|+++++...+.......|.++.++..++.+...+++.
T Consensus 194 ~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~ 230 (280)
T PF13429_consen 194 GDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRY 230 (280)
T ss_dssp CHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-H
T ss_pred CChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccc
Confidence 9999999999998888898888888888888777765
No 122
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.64 E-value=3.5e-07 Score=89.66 Aligned_cols=69 Identities=23% Similarity=0.215 Sum_probs=66.4
Q ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHhccCHHHHHHHHHHHHhc
Q 016973 31 ISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKA---YWRKATACMKLEEYETAKVALEKGASL 99 (379)
Q Consensus 31 ~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a---~~~la~~~~~lg~y~~A~~~~~~a~~l 99 (379)
.+|+++.+++++|.+|+++|+|++|+..|++|++++|++..+ ||++|.+|..+|++++|+.+|++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 479999999999999999999999999999999999999865 999999999999999999999999997
No 123
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.63 E-value=4.2e-07 Score=82.58 Aligned_cols=111 Identities=22% Similarity=0.269 Sum_probs=101.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccC
Q 016973 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE 85 (379)
Q Consensus 6 ~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~ 85 (379)
...+..++..|+-+.++....+++..+|.+..++...|..++..|+|.+|+..+.++..+.|+++++|..+|.+|-++|+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccC
Confidence 45677888889999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 016973 86 YETAKVALEKGASLAPGDSRFTNLIKECEER 116 (379)
Q Consensus 86 y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 116 (379)
++.|...|.+++++.|+++.....+......
T Consensus 150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L 180 (257)
T COG5010 150 FDEARRAYRQALELAPNEPSIANNLGMSLLL 180 (257)
T ss_pred hhHHHHHHHHHHHhccCCchhhhhHHHHHHH
Confidence 9999999999999999999877776665443
No 124
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=1.3e-07 Score=90.69 Aligned_cols=119 Identities=18% Similarity=0.247 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------------AELFADRAQASIKLQNFTEAVADANRAIELEPS- 68 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~------------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~- 68 (379)
+++++.+|.+++-..+.+.|+..|+++|.++|.+ ...+-.+|.-.++.|+|..|.++|..||.++|.
T Consensus 203 ~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n 282 (486)
T KOG0550|consen 203 AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN 282 (486)
T ss_pred hHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc
Confidence 5678889999999999999999999999999987 345677888899999999999999999999996
Q ss_pred ---CHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973 69 ---MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (379)
Q Consensus 69 ---~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (379)
+...|+++|.++.++|+..+|+..+..++.+++.........++|...|...
T Consensus 283 ~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~ 337 (486)
T KOG0550|consen 283 KKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKW 337 (486)
T ss_pred cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 5778999999999999999999999999999999998888889998888876
No 125
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.62 E-value=1.6e-07 Score=83.02 Aligned_cols=116 Identities=22% Similarity=0.149 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~ 81 (379)
|.-++++|+.|-..|-+.-|.-.|+++|.+.|.-++++..+|.-+...|+|+.|.+.|+-.++++|.+--+++++|++++
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y 144 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 144 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence 44578888888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 016973 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (379)
Q Consensus 82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l 117 (379)
.-|+|.-|...|.+..+-+|+|+--..|+-..+.++
T Consensus 145 Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~ 180 (297)
T COG4785 145 YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKL 180 (297)
T ss_pred ecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhC
Confidence 999999999999999999999997666765554443
No 126
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.62 E-value=5e-07 Score=96.68 Aligned_cols=111 Identities=10% Similarity=-0.046 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~ 82 (379)
...+.++...++.|+|+.|+..|.++++.+|.++.+...++.++..+|++++|+..+++++.-.+.....+..+|.+|..
T Consensus 35 ~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 35 DTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRN 114 (822)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999853333566666666666666666666662223333333333556666
Q ss_pred ccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 016973 83 LEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (379)
Q Consensus 83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~ 113 (379)
+|+|++|+..|+++++++|+++.+...+..+
T Consensus 115 ~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~ 145 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDPTNPDLISGMIMT 145 (822)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 6666666666666666666666655544443
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.61 E-value=7.9e-07 Score=87.05 Aligned_cols=112 Identities=21% Similarity=0.157 Sum_probs=100.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccC
Q 016973 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE 85 (379)
Q Consensus 6 ~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~ 85 (379)
-..+..++..+++.+|++.+++++.++|+...+.+++|.+|++.|++.+|+..+.+.+..+|.++..|..+|.+|..+|+
T Consensus 344 ~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~ 423 (484)
T COG4783 344 ELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGN 423 (484)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCc
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 016973 86 YETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (379)
Q Consensus 86 y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l 117 (379)
-.+|..++.....+..+-..+...+..+..+.
T Consensus 424 ~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 424 RAEALLARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 99998888888888877666666555554443
No 128
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=3.9e-07 Score=87.55 Aligned_cols=96 Identities=23% Similarity=0.210 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l 83 (379)
.+.+.+.++.+.++|..|+..++++|.++|+|.-++|+||.|+..+|+|+.|+.+|.+|+++.|.+..+...+..|..+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999998888777
Q ss_pred cCHHHH-HHHHHHHHhc
Q 016973 84 EEYETA-KVALEKGASL 99 (379)
Q Consensus 84 g~y~~A-~~~~~~a~~l 99 (379)
.+|.+. ...|...+..
T Consensus 339 ~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 339 REYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 666554 4555555443
No 129
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.60 E-value=4.1e-07 Score=91.44 Aligned_cols=118 Identities=10% Similarity=0.074 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~ 82 (379)
..+|.++..+|..++|...+...+.+|...|.+.+-+.-+|..+..+|+-++|......+++.++.+..+|.-+|.++..
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (379)
Q Consensus 83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (379)
.++|++|+.||+.|+.++|+|.+++.-+..++..++..
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~ 125 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDY 125 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999998888876
No 130
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.56 E-value=9e-07 Score=66.43 Aligned_cols=83 Identities=25% Similarity=0.354 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 016973 38 LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (379)
Q Consensus 38 ~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l 117 (379)
+++.+|.+++..|++++|+..+.+++.+.|.+..+++.+|.++...|++++|+..|++++.+.|.+......++.+...+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999887777777766665
Q ss_pred Hhh
Q 016973 118 AEE 120 (379)
Q Consensus 118 ~~~ 120 (379)
+..
T Consensus 82 ~~~ 84 (100)
T cd00189 82 GKY 84 (100)
T ss_pred HhH
Confidence 553
No 131
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.55 E-value=1e-06 Score=85.53 Aligned_cols=97 Identities=16% Similarity=0.137 Sum_probs=85.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHH
Q 016973 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM----SKAYWRKATAC 80 (379)
Q Consensus 5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~----~~a~~~la~~~ 80 (379)
+...|..+...|++++|+..|.+++.++|++..++..+|.+++..|++++|+..+.+++...|.. ...++.+|.++
T Consensus 117 ~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~ 196 (355)
T cd05804 117 LGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence 44678899999999999999999999999999999999999999999999999999999987643 24567899999
Q ss_pred HhccCHHHHHHHHHHHHhcCC
Q 016973 81 MKLEEYETAKVALEKGASLAP 101 (379)
Q Consensus 81 ~~lg~y~~A~~~~~~a~~l~p 101 (379)
..+|++++|+..|++++...|
T Consensus 197 ~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 197 LERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHCCCHHHHHHHHHHHhcccc
Confidence 999999999999999877766
No 132
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.51 E-value=1.4e-06 Score=85.53 Aligned_cols=89 Identities=24% Similarity=0.334 Sum_probs=46.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHH
Q 016973 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYE 87 (379)
Q Consensus 8 ~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~ 87 (379)
.+..++..++-.+|++++.++|..+|.+..++...|..+++.++++.|+..+.+|+.+.|.....|+.|+.+|..+|+|+
T Consensus 206 LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e 285 (395)
T PF09295_consen 206 LARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFE 285 (395)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHH
Confidence 34444445555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHH
Q 016973 88 TAKVALEKG 96 (379)
Q Consensus 88 ~A~~~~~~a 96 (379)
.|+..+..+
T Consensus 286 ~ALlaLNs~ 294 (395)
T PF09295_consen 286 NALLALNSC 294 (395)
T ss_pred HHHHHHhcC
Confidence 555444433
No 133
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.50 E-value=1.2e-06 Score=91.72 Aligned_cols=114 Identities=14% Similarity=0.090 Sum_probs=85.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 016973 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS-AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA 79 (379)
Q Consensus 1 ~A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~-~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~ 79 (379)
+|+.++..|..+...|+|++|-.+|.+++..++++ ...++.+|..|++.|++.+|+.+|++.+...|++.+.+..+|.+
T Consensus 306 ~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~L 385 (1018)
T KOG2002|consen 306 KAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCL 385 (1018)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhH
Confidence 35667777888888888888888888888777777 56677778888888888888888888888888877877777777
Q ss_pred HHhcc----CHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 016973 80 CMKLE----EYETAKVALEKGASLAPGDSRFTNLIKECE 114 (379)
Q Consensus 80 ~~~lg----~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (379)
|...+ ..+.|...+.++++..|.+..++..++.+.
T Consensus 386 ya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 386 YAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLL 424 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 77765 566777777777777777776655555543
No 134
>PRK11906 transcriptional regulator; Provisional
Probab=98.49 E-value=2.6e-06 Score=83.74 Aligned_cols=113 Identities=10% Similarity=-0.007 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHcCCH---HHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhCCC
Q 016973 4 DLEKKAKEAFIDDYF---ELAYDLYSQAI---EISPNSAELFADRAQASIKL---------QNFTEAVADANRAIELEPS 68 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y---~~Al~~y~~al---~~~p~~~~~~~~ra~~~~~l---------g~~~eAl~~~~~Al~l~p~ 68 (379)
.++.+|...+..+.. ..|+.+|.+|+ .++|....+|..+|.|++.+ ....+|++.+.+|++++|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 456677777665554 58888999999 89999999999999999876 2356889999999999999
Q ss_pred CHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 016973 69 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER 116 (379)
Q Consensus 69 ~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 116 (379)
++.+++.+|.++...++++.|...|++|+.++|+........+.+...
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~ 384 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH 384 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999877777765443
No 135
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.49 E-value=5.3e-06 Score=70.36 Aligned_cols=93 Identities=18% Similarity=0.167 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~---~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~ 80 (379)
..+..|..++..|+|++|+..|+.++...++. ..+.+++|.+++..|+|++|+..+.. +.-.+-.+.++..+|.+|
T Consensus 50 A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~ 128 (145)
T PF09976_consen 50 AALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIY 128 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHH
Confidence 56778999999999999999999999987655 46788999999999999999999966 333445678899999999
Q ss_pred HhccCHHHHHHHHHHHH
Q 016973 81 MKLEEYETAKVALEKGA 97 (379)
Q Consensus 81 ~~lg~y~~A~~~~~~a~ 97 (379)
+..|++++|+..|++++
T Consensus 129 ~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 129 LAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHCCCHHHHHHHHHHhC
Confidence 99999999999999874
No 136
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=4.4e-06 Score=75.71 Aligned_cols=88 Identities=19% Similarity=0.137 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ---NFTEAVADANRAIELEPSMSKAYWRKAT 78 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg---~~~eAl~~~~~Al~l~p~~~~a~~~la~ 78 (379)
.++|...+..|+..|+|..|.=||.+++-++|.++.++.++|.+++-+| ++.-|..+|.+|+.++|.+..++|.+-.
T Consensus 154 ~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~l 233 (289)
T KOG3060|consen 154 QEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYL 233 (289)
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHH
Confidence 3688999999999999999999999999999999999999999998875 6788999999999999999999998888
Q ss_pred HHHhccCHHHH
Q 016973 79 ACMKLEEYETA 89 (379)
Q Consensus 79 ~~~~lg~y~~A 89 (379)
|...+-+...+
T Consensus 234 c~~~la~~sk~ 244 (289)
T KOG3060|consen 234 CGSALAQISKA 244 (289)
T ss_pred HHHHHHHHhHH
Confidence 87766444333
No 137
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.48 E-value=6.8e-07 Score=82.74 Aligned_cols=85 Identities=21% Similarity=0.196 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~ 82 (379)
--|.++|.+|.+.|.|+.|++.+..||.++|+...+|.++|.+|+.+|+|.+|++.|.+||.++|.+....-.|..+-..
T Consensus 116 VyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~ 195 (304)
T KOG0553|consen 116 VYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQK 195 (304)
T ss_pred hHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999998888777777776
Q ss_pred ccCHH
Q 016973 83 LEEYE 87 (379)
Q Consensus 83 lg~y~ 87 (379)
+++-.
T Consensus 196 l~e~~ 200 (304)
T KOG0553|consen 196 LNEPK 200 (304)
T ss_pred hcCCC
Confidence 66655
No 138
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.47 E-value=9.3e-07 Score=77.23 Aligned_cols=86 Identities=16% Similarity=0.137 Sum_probs=76.2
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHH
Q 016973 34 NSAELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLI 110 (379)
Q Consensus 34 ~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~---~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l 110 (379)
....+++++|.++...|++++|+.+|.+++.+.++. ..+++.+|.++..+|+|++|+.+|++++.+.|++......+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 457789999999999999999999999999987753 57999999999999999999999999999999998887777
Q ss_pred HHHHHHHHh
Q 016973 111 KECEERIAE 119 (379)
Q Consensus 111 ~~~~~~l~~ 119 (379)
+.+...++.
T Consensus 113 g~~~~~~g~ 121 (172)
T PRK02603 113 AVIYHKRGE 121 (172)
T ss_pred HHHHHHcCC
Confidence 777665544
No 139
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.46 E-value=1.9e-07 Score=70.22 Aligned_cols=64 Identities=20% Similarity=0.340 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 016973 36 AELFADRAQASIKLQNFTEAVADANRAIELE-------PSMSKAYWRKATACMKLEEYETAKVALEKGASL 99 (379)
Q Consensus 36 ~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~-------p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l 99 (379)
..++.++|.+|..+|+|++|+.+|++++.+. +..+.+++++|.++..+|++++|+.+|++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4567888888888888888888888888662 123667888888888888888888888888765
No 140
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.46 E-value=4.4e-07 Score=92.35 Aligned_cols=106 Identities=20% Similarity=0.188 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~ 81 (379)
+.+-...|...+.+++|.+|..+++..++++|-....|+++|.|+.++++++.|..+|.+++.++|++..+|.+++-+|.
T Consensus 485 arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi 564 (777)
T KOG1128|consen 485 ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYI 564 (777)
T ss_pred HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHH
Confidence 33444556667778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHHHHhcCCCChHHH
Q 016973 82 KLEEYETAKVALEKGASLAPGDSRFT 107 (379)
Q Consensus 82 ~lg~y~~A~~~~~~a~~l~p~~~~~~ 107 (379)
++|+-.+|...+++|++.+-.+-.++
T Consensus 565 ~~~~k~ra~~~l~EAlKcn~~~w~iW 590 (777)
T KOG1128|consen 565 RLKKKKRAFRKLKEALKCNYQHWQIW 590 (777)
T ss_pred HHhhhHHHHHHHHHHhhcCCCCCeee
Confidence 99999999999999999986655433
No 141
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.46 E-value=2.7e-06 Score=91.17 Aligned_cols=114 Identities=14% Similarity=0.116 Sum_probs=95.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Q 016973 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (379)
Q Consensus 5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg 84 (379)
+...|..+...|+|+.|+++|+++++.+|+++.++..++.+|..++++++|+..+.+++..+|.+... ..++.++..++
T Consensus 105 llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~ 183 (822)
T PRK14574 105 LASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATD 183 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcc
Confidence 44457788899999999999999999999999999999999999999999999999999999985554 55566666678
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973 85 EYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (379)
Q Consensus 85 ~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~ 119 (379)
++.+|+..|+++++++|++..+...+-.+...++.
T Consensus 184 ~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~ 218 (822)
T PRK14574 184 RNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRI 218 (822)
T ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 88779999999999999999877666555444433
No 142
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.45 E-value=4.9e-06 Score=86.58 Aligned_cols=100 Identities=20% Similarity=0.182 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~ 81 (379)
...++..|.++-..|+.+.|+...-.|..++|.+.+.|..+|....++|++.+|+-+|.+||+++|.+.+..++++.+|.
T Consensus 173 ~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~ 252 (895)
T KOG2076|consen 173 PIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQ 252 (895)
T ss_pred hhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHHHHhcCC
Q 016973 82 KLEEYETAKVALEKGASLAP 101 (379)
Q Consensus 82 ~lg~y~~A~~~~~~a~~l~p 101 (379)
++|++..|+..|.+++.++|
T Consensus 253 ~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 253 KTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HhChHHHHHHHHHHHHhhCC
Confidence 99999999999999999999
No 143
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.44 E-value=5.7e-07 Score=88.50 Aligned_cols=113 Identities=25% Similarity=0.265 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKL---QNFTEAVADANRAIELEPSMSKAYWRKAT 78 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~l---g~~~eAl~~~~~Al~l~p~~~~a~~~la~ 78 (379)
++.++..|+..|-.+....|+..|.+++...|....+|.+||.++++. |+.-.|+.|+..|++++|...++||+|+.
T Consensus 374 ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~ 453 (758)
T KOG1310|consen 374 IEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLAR 453 (758)
T ss_pred HHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHH
Confidence 456788899999999999999999999999999999999999999987 67888999999999999999999999999
Q ss_pred HHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 016973 79 ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE 114 (379)
Q Consensus 79 ~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (379)
+++.++++.+|+.+...+....|.+.........+.
T Consensus 454 aL~el~r~~eal~~~~alq~~~Ptd~a~~~~v~~l~ 489 (758)
T KOG1310|consen 454 ALNELTRYLEALSCHWALQMSFPTDVARQNFVLCLP 489 (758)
T ss_pred HHHHHhhHHHhhhhHHHHhhcCchhhhhhhhhhccc
Confidence 999999999999999888888886655444443333
No 144
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.44 E-value=8.1e-06 Score=81.35 Aligned_cols=118 Identities=14% Similarity=0.106 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHH
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS-KAYWRKATACM 81 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~-~a~~~la~~~~ 81 (379)
......|...+..|+|+.|.+.+.++....|.....+...|.++.++|+++.|...+.++.+..|... .+...++.++.
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l 164 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILL 164 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHH
Confidence 45577899999999999999999999999998888888899999999999999999999999988875 45666799999
Q ss_pred hccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (379)
Q Consensus 82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (379)
..|+++.|...+++..+..|+++.+...+..+....++.
T Consensus 165 ~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~ 203 (409)
T TIGR00540 165 AQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAW 203 (409)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhH
Confidence 999999999999999999999999888888887777665
No 145
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.43 E-value=2.6e-06 Score=90.77 Aligned_cols=112 Identities=13% Similarity=0.063 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH------------
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS------------ 70 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~------------ 70 (379)
.++......+...+++++|+..+..++..+|+...+|+..|.++++.+++.+|... .++.+.+...
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i 109 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKI 109 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHH
Confidence 46777888888999999999999999999999999999999999999888776654 5555555444
Q ss_pred -------HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 016973 71 -------KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER 116 (379)
Q Consensus 71 -------~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 116 (379)
.|++.+|.||-.+|++++|...|+++++++|+|+.+...++.....
T Consensus 110 ~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae 162 (906)
T PRK14720 110 LLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE 162 (906)
T ss_pred HhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999877766654443
No 146
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.42 E-value=6.4e-07 Score=83.66 Aligned_cols=95 Identities=16% Similarity=0.151 Sum_probs=54.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Q 016973 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (379)
Q Consensus 5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg 84 (379)
+..++.++-.++++++|+++|..++..+|.|.++....|..|+--++.+-|+.+|.+++++.-.+++.+.++|.|++..+
T Consensus 293 l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaq 372 (478)
T KOG1129|consen 293 LLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQ 372 (478)
T ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhc
Confidence 45566777777777777777777777777775444444444444444555555555555554445555555555555555
Q ss_pred CHHHHHHHHHHHHhc
Q 016973 85 EYETAKVALEKGASL 99 (379)
Q Consensus 85 ~y~~A~~~~~~a~~l 99 (379)
+|+-++.+|++|+..
T Consensus 373 Q~D~~L~sf~RAlst 387 (478)
T KOG1129|consen 373 QIDLVLPSFQRALST 387 (478)
T ss_pred chhhhHHHHHHHHhh
Confidence 544444444444444
No 147
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.40 E-value=3.2e-06 Score=68.07 Aligned_cols=84 Identities=14% Similarity=0.145 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCh---HHHHH
Q 016973 36 AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWRKATACMKLEEYETAKVALEKGASLAPGDS---RFTNL 109 (379)
Q Consensus 36 ~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~---~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~---~~~~~ 109 (379)
+..++.+|..+...|++++|+..|..++..+|++ ..+++.+|.+++..|+++.|+..|+.++..+|+++ .+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 3568999999999999999999999999999876 67999999999999999999999999999999863 44555
Q ss_pred HHHHHHHHHh
Q 016973 110 IKECEERIAE 119 (379)
Q Consensus 110 l~~~~~~l~~ 119 (379)
++.+...++.
T Consensus 82 ~~~~~~~~~~ 91 (119)
T TIGR02795 82 LGMSLQELGD 91 (119)
T ss_pred HHHHHHHhCC
Confidence 5555554444
No 148
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.37 E-value=3.8e-06 Score=87.98 Aligned_cols=115 Identities=16% Similarity=0.161 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHH
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM-SKAYWRKAT 78 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~---~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~-~~a~~~la~ 78 (379)
..+...++-+|..|+|..+..++..++...-+. .+.+|.+|.+|..+|+|++|..+|-.++..++++ .-.++.+|+
T Consensus 271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQ 350 (1018)
T KOG2002|consen 271 VALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQ 350 (1018)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhH
Confidence 467788999999999999999999999886544 3459999999999999999999999999999987 789999999
Q ss_pred HHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 016973 79 ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (379)
Q Consensus 79 ~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l 117 (379)
.|.+.|+++.|..+|++++...|++......++.+....
T Consensus 351 m~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~ 389 (1018)
T KOG2002|consen 351 MYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHS 389 (1018)
T ss_pred HHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhh
Confidence 999999999999999999999999999888888877766
No 149
>PRK11906 transcriptional regulator; Provisional
Probab=98.36 E-value=5.8e-06 Score=81.39 Aligned_cols=91 Identities=14% Similarity=0.145 Sum_probs=86.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHH
Q 016973 15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALE 94 (379)
Q Consensus 15 ~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~ 94 (379)
..+..+|+++-.+|++++|.++.++..+|.++...++++.|+..|++|+.++|+++.+|+..|.+++..|+.++|...++
T Consensus 317 ~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 317 ELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCChH
Q 016973 95 KGASLAPGDSR 105 (379)
Q Consensus 95 ~a~~l~p~~~~ 105 (379)
+|++++|....
T Consensus 397 ~alrLsP~~~~ 407 (458)
T PRK11906 397 KSLQLEPRRRK 407 (458)
T ss_pred HHhccCchhhH
Confidence 99999997654
No 150
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.34 E-value=1.3e-06 Score=65.65 Aligned_cols=65 Identities=18% Similarity=0.283 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC-C---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI---SP-N---SAELFADRAQASIKLQNFTEAVADANRAIELE 66 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~---~p-~---~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~ 66 (379)
+..+...|.+++..|+|++|+.+|++++.+ .+ . -+.++.++|.|+..+|++++|++.+.+|+.+.
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 567899999999999999999999999987 22 2 26789999999999999999999999999763
No 151
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.31 E-value=2.5e-05 Score=77.59 Aligned_cols=119 Identities=14% Similarity=0.108 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSK-AYWRKATAC 80 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~-a~~~la~~~ 80 (379)
+...+..|..++..|+|+.|.+...++-...++....+...+.+..++|+++.|...+.+|.+.+|+... ..+..+.++
T Consensus 84 ~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~ 163 (398)
T PRK10747 84 ARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQ 163 (398)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 3456778888999999999998887766654333344444455558899999999999999998888753 344558899
Q ss_pred HhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (379)
Q Consensus 81 ~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (379)
...|++++|...+++..+.+|+++.+...+..+....++-
T Consensus 164 l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw 203 (398)
T PRK10747 164 LARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAW 203 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999998888888877766654
No 152
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.31 E-value=7.7e-06 Score=79.35 Aligned_cols=98 Identities=18% Similarity=0.101 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-------------------------------------HHHHH
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFAD-------------------------------------RAQAS 46 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~-------------------------------------ra~~~ 46 (379)
..+.+|..++..|++++|+.++.+++..+|.+..++.. +|.++
T Consensus 45 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~ 124 (355)
T cd05804 45 RAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGL 124 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHH
Confidence 45667889999999999999999999998887655442 33344
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 016973 47 IKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP 101 (379)
Q Consensus 47 ~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p 101 (379)
..+|++++|+..+++++.++|.+..++..+|.+|+.+|++++|+.+|++++.+.|
T Consensus 125 ~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~ 179 (355)
T cd05804 125 EEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD 179 (355)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence 4445555555555555555555555555555555555555555555555555544
No 153
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=5.4e-06 Score=82.43 Aligned_cols=111 Identities=13% Similarity=0.087 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~ 82 (379)
-.|+..|.-|+--|++.+|.++|.++..++|....+|...|+.+.-.+..++|+.+|..|-++.|.....++.+|.-|.+
T Consensus 313 ~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~ 392 (611)
T KOG1173|consen 313 LSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMR 392 (611)
T ss_pred cchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHH
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 016973 83 LEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (379)
Q Consensus 83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~ 113 (379)
++.+..|..+|.+|+.+.|+++-+...++.+
T Consensus 393 t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvv 423 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIAPSDPLVLHELGVV 423 (611)
T ss_pred hccHHHHHHHHHHHHhcCCCcchhhhhhhhe
Confidence 9999999999999999999998766655544
No 154
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.27 E-value=4.2e-06 Score=78.33 Aligned_cols=114 Identities=13% Similarity=0.006 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~ 82 (379)
+.+.-.+.+|.+-.+...|+..|.+.|+..|.+..++...|.++..++++++|++.|..++.++|.+.++.-.+|.-||.
T Consensus 257 dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY 336 (478)
T KOG1129|consen 257 DTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFY 336 (478)
T ss_pred hHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeecccc
Confidence 44555556666666666666666666666666666677777777777777777777777777777777777677777777
Q ss_pred ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 016973 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEER 116 (379)
Q Consensus 83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 116 (379)
-++.+-|+.+|++.+.+.-.++++...++.|=..
T Consensus 337 ~~~PE~AlryYRRiLqmG~~speLf~NigLCC~y 370 (478)
T KOG1129|consen 337 DNNPEMALRYYRRILQMGAQSPELFCNIGLCCLY 370 (478)
T ss_pred CCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHh
Confidence 7777777777777777777677666666665433
No 155
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.27 E-value=1.3e-05 Score=79.94 Aligned_cols=117 Identities=8% Similarity=-0.024 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHccCHHHHHHHHHHHHHhCCCCH--HHHHHHHH
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELF--ADRAQASIKLQNFTEAVADANRAIELEPSMS--KAYWRKAT 78 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~--~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~--~a~~~la~ 78 (379)
......|..+...|++++|+..+.+++...|++.... ..+.......++...++..++++++.+|+++ ..+..+|.
T Consensus 264 ~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~ 343 (409)
T TIGR00540 264 ALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQ 343 (409)
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence 3456778999999999999999999999999987531 2233344456889999999999999999999 88889999
Q ss_pred HHHhccCHHHHHHHHH--HHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973 79 ACMKLEEYETAKVALE--KGASLAPGDSRFTNLIKECEERIAEE 120 (379)
Q Consensus 79 ~~~~lg~y~~A~~~~~--~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (379)
+++++|+|++|..+|+ .+++.+|++.... .++.+...+++.
T Consensus 344 l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~g~~ 386 (409)
T TIGR00540 344 LLMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAFDQAGDK 386 (409)
T ss_pred HHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHcCCH
Confidence 9999999999999999 6888889877644 777776655553
No 156
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.26 E-value=1.1e-05 Score=82.94 Aligned_cols=117 Identities=17% Similarity=0.081 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l 83 (379)
.+...|..+...+.-++|..++.++-.+.|..+..|+.+|.++...|++.+|.+.|..|+.++|++..+.-.+|.+|.+.
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~ 731 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLEL 731 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Confidence 34567888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHH--HHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973 84 EEYETAKV--ALEKGASLAPGDSRFTNLIKECEERIAEE 120 (379)
Q Consensus 84 g~y~~A~~--~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (379)
|+-.-|.. .+..+++++|.+.+++..++.+-..++..
T Consensus 732 G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~ 770 (799)
T KOG4162|consen 732 GSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDS 770 (799)
T ss_pred CCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccch
Confidence 99888887 99999999999999999999999888876
No 157
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.25 E-value=5.7e-06 Score=83.58 Aligned_cols=99 Identities=27% Similarity=0.285 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI--------SPNSAELFADRAQASIKLQNFTEAVADANRAIELE------- 66 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~--------~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~------- 66 (379)
+..+...|..|...++|.+|+.+|.+||.+ +|.-+.++.++|.+|.+.|+|.+|..++++|+.+-
T Consensus 241 a~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~ 320 (508)
T KOG1840|consen 241 ASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGAS 320 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccC
Confidence 345566899999999999999999999998 44447889999999999999999999999999883
Q ss_pred -CCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q 016973 67 -PSMSKAYWRKATACMKLEEYETAKVALEKGASLA 100 (379)
Q Consensus 67 -p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~ 100 (379)
+.-+..+..++.++..+++|++|+.+|++++++.
T Consensus 321 ~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 321 HPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 3456788889999999999999999999999874
No 158
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=2.1e-05 Score=73.24 Aligned_cols=106 Identities=16% Similarity=0.141 Sum_probs=93.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccC---HHHHHH
Q 016973 15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE---YETAKV 91 (379)
Q Consensus 15 ~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~---y~~A~~ 91 (379)
....+..+.-++.-|..||++.+-|..+|.+|+.+|++..|...|.+|+++.|+++..+..+|.+++.... -.++..
T Consensus 135 ~~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 135 EQEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 34467788889999999999999999999999999999999999999999999999999999999876553 468999
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973 92 ALEKGASLAPGDSRFTNLIKECEERIAEE 120 (379)
Q Consensus 92 ~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (379)
.|++++.++|++......++......++.
T Consensus 215 ll~~al~~D~~~iral~lLA~~afe~g~~ 243 (287)
T COG4235 215 LLRQALALDPANIRALSLLAFAAFEQGDY 243 (287)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHcccH
Confidence 99999999999999888888776655554
No 159
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.22 E-value=7.2e-06 Score=82.84 Aligned_cols=97 Identities=21% Similarity=0.182 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CC
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEI--------SPNSAELFADRAQASIKLQNFTEAVADANRAIEL--------EP 67 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~--------~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l--------~p 67 (379)
.+...|..|+..|+|+.|+..|.+||++ .+.-...+..+|..|..+++|.+|+..|.+|+.+ +|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3455899999999999999999999999 4444555666999999999999999999999987 34
Q ss_pred CCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q 016973 68 SMSKAYWRKATACMKLEEYETAKVALEKGASLA 100 (379)
Q Consensus 68 ~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~ 100 (379)
.-+.++.+||.+|+..|+|++|..++++|+++.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~ 313 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIY 313 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999874
No 160
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.22 E-value=2.2e-06 Score=65.52 Aligned_cols=58 Identities=22% Similarity=0.347 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRA 62 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~A 62 (379)
.++..|.++|..|+|.+|+.++++ +..++.+....+.+|.|++++|+|++|+..+.+|
T Consensus 27 ~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 27 YLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 467789999999999999999999 8888888888888999999999999999999875
No 161
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=9.7e-06 Score=78.01 Aligned_cols=109 Identities=19% Similarity=0.209 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~ 81 (379)
+..|+..|..+|..++|..|+.+-.++|+.+|++..+|.-.|.+++.+++.++|+-.|+.|+.+.|..-..|..+-.+|.
T Consensus 300 a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYL 379 (564)
T KOG1174|consen 300 ASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYL 379 (564)
T ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence 34567778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hccCHHHHHHHHHHHHhcCCCChHHHHHH
Q 016973 82 KLEEYETAKVALEKGASLAPGDSRFTNLI 110 (379)
Q Consensus 82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l 110 (379)
..|++.+|......+...-|.+......+
T Consensus 380 A~~~~kEA~~~An~~~~~~~~sA~~LtL~ 408 (564)
T KOG1174|consen 380 AQKRFKEANALANWTIRLFQNSARSLTLF 408 (564)
T ss_pred hhchHHHHHHHHHHHHHHhhcchhhhhhh
Confidence 88888888888888888877777655444
No 162
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.19 E-value=7e-05 Score=67.30 Aligned_cols=111 Identities=15% Similarity=0.091 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHhCCC
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQ-----------NFTEAVADANRAIELEPS 68 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~---~~~~~~ra~~~~~lg-----------~~~eAl~~~~~Al~l~p~ 68 (379)
++++..|.+++..|+|..|+..|++.+...|++ ..+++.+|.|++.+. ...+|+..|...+...|+
T Consensus 43 ~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~ 122 (203)
T PF13525_consen 43 QAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPN 122 (203)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcC
Confidence 567899999999999999999999999999987 568999999987763 345899999999999997
Q ss_pred CH-----------------HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 016973 69 MS-----------------KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (379)
Q Consensus 69 ~~-----------------~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~ 113 (379)
+. .--+..|..|++.|.|..|+..|+.+++..|+.+.....+..+
T Consensus 123 S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l 184 (203)
T PF13525_consen 123 SEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARL 184 (203)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHH
Confidence 42 2235578999999999999999999999999988765544443
No 163
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.17 E-value=2.9e-05 Score=83.02 Aligned_cols=112 Identities=10% Similarity=0.012 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----------------
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE---------------- 66 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~---------------- 66 (379)
.+++.+|.+|-+.|++++|...|+++|+++|+|+.++.++|..|... ++++|+..+.+|+...
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~ 195 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKL 195 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999 9999999999998763
Q ss_pred ----CCCHHHH--------------------HHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 016973 67 ----PSMSKAY--------------------WRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEE 115 (379)
Q Consensus 67 ----p~~~~a~--------------------~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 115 (379)
|.+...+ +-+-.+|...++|++++..|+.+++++|.|.-+...+..|..
T Consensus 196 ~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 196 VHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 2222222 222278888999999999999999999999998888888876
No 164
>PRK15331 chaperone protein SicA; Provisional
Probab=98.17 E-value=8.5e-06 Score=69.76 Aligned_cols=89 Identities=11% Similarity=0.014 Sum_probs=82.3
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 016973 32 SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIK 111 (379)
Q Consensus 32 ~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~ 111 (379)
.++.-+..+..|.-++..|++++|...|.-...+++.+++.++.+|-|+..+++|++|+.+|..|..++++|+......+
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence 44446778999999999999999999999999999999999999999999999999999999999999999999888889
Q ss_pred HHHHHHHhh
Q 016973 112 ECEERIAEE 120 (379)
Q Consensus 112 ~~~~~l~~~ 120 (379)
.|...+++.
T Consensus 113 qC~l~l~~~ 121 (165)
T PRK15331 113 QCQLLMRKA 121 (165)
T ss_pred HHHHHhCCH
Confidence 998888776
No 165
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.17 E-value=5.3e-05 Score=77.24 Aligned_cols=77 Identities=19% Similarity=0.192 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 016973 37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (379)
Q Consensus 37 ~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~ 113 (379)
++++.+|.+|..+|++++|+..+++||...|..++.|+.+|.+|.+.|++.+|..++..|..+|..|.-+..-..+.
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy 271 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKY 271 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHH
Confidence 56788899998999999999999999999999999999999999999999999999999999998887654444443
No 166
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=1.8e-05 Score=76.13 Aligned_cols=117 Identities=18% Similarity=0.142 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH----------------------------------HHHHc
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQ----------------------------------ASIKL 49 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~----------------------------------~~~~l 49 (379)
-+...|.++|..|++.+|+..|.++..++|.+....--.|. .++..
T Consensus 234 Ll~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~ 313 (564)
T KOG1174|consen 234 LMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDE 313 (564)
T ss_pred HHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhh
Confidence 45678999999999999999999999999987433222222 23344
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973 50 QNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (379)
Q Consensus 50 g~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (379)
++|..|+....++|+++|++..+++..|.++.++|+..+|+-+|+.|..+.|.+-...+.+-.|....+..
T Consensus 314 K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 314 KKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchH
Confidence 77888999999999999999999999999999999999999999999999999888777777776665554
No 167
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.16 E-value=6.3e-06 Score=86.50 Aligned_cols=118 Identities=17% Similarity=0.120 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------------------------------------HHHHHHHHH
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA------------------------------------ELFADRAQA 45 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~------------------------------------~~~~~ra~~ 45 (379)
|-.+...|..|..-.+...|..+|++|.++++.++ ..|..||..
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 44555566666666666677777777777766551 223445555
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973 46 SIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (379)
Q Consensus 46 ~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~ 119 (379)
|...+++..|+.+|+.|++.+|.+..+|..+|.+|.+.|+|..|+..|.++..++|.+.-.....+-++..++.
T Consensus 572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~Gk 645 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGK 645 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhh
Confidence 66667777777777777777777777777777777777777777777777777777766555555544444444
No 168
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.13 E-value=2.4e-05 Score=76.10 Aligned_cols=112 Identities=15% Similarity=0.015 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~ 82 (379)
+++++.|..+-..|++++|+.+|-+.-.+--++++.++.+|.+|..+.+...|++.+..+..+-|+++.++-.+|..|-+
T Consensus 525 ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydq 604 (840)
T KOG2003|consen 525 EALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQ 604 (840)
T ss_pred HHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhc
Confidence 47889999999999999999999888888778899999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 016973 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECE 114 (379)
Q Consensus 83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (379)
.|+-.+|..++-...+.-|.+.+...|++...
T Consensus 605 egdksqafq~~ydsyryfp~nie~iewl~ayy 636 (840)
T KOG2003|consen 605 EGDKSQAFQCHYDSYRYFPCNIETIEWLAAYY 636 (840)
T ss_pred ccchhhhhhhhhhcccccCcchHHHHHHHHHH
Confidence 99988888888888888888888888887643
No 169
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.13 E-value=5.6e-05 Score=65.73 Aligned_cols=101 Identities=22% Similarity=0.200 Sum_probs=92.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHH
Q 016973 5 LEKKAKEAFIDDYFELAYDLYSQAIEI-SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS--MSKAYWRKATACM 81 (379)
Q Consensus 5 l~~~g~~~~~~g~y~~Al~~y~~al~~-~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~--~~~a~~~la~~~~ 81 (379)
-+..|+.+.+.|+|.+|...|.+++.- ...++..++.+|.+.+.++++..|...++...+.+|. .+..++.+|..|.
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~la 171 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLA 171 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHH
Confidence 467899999999999999999999984 6778999999999999999999999999999999984 6888999999999
Q ss_pred hccCHHHHHHHHHHHHhcCCCChH
Q 016973 82 KLEEYETAKVALEKGASLAPGDSR 105 (379)
Q Consensus 82 ~lg~y~~A~~~~~~a~~l~p~~~~ 105 (379)
.+|+|.+|...|+.++...|+-..
T Consensus 172 a~g~~a~Aesafe~a~~~ypg~~a 195 (251)
T COG4700 172 AQGKYADAESAFEVAISYYPGPQA 195 (251)
T ss_pred hcCCchhHHHHHHHHHHhCCCHHH
Confidence 999999999999999999997543
No 170
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.13 E-value=4.3e-05 Score=75.90 Aligned_cols=113 Identities=12% Similarity=0.089 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l 83 (379)
.....|..+...|+.++|...+.+++... .++.+...++.+ ..+++++++..++..++.+|+++..++.+|.++.+.
T Consensus 265 ~~~~~A~~l~~~g~~~~A~~~L~~~l~~~-~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~ 341 (398)
T PRK10747 265 LQVAMAEHLIECDDHDTAQQIILDGLKRQ-YDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKH 341 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Confidence 45667899999999999999999999954 455555555544 459999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (379)
Q Consensus 84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (379)
++|.+|..+|+++++..|++..+ ..+..+...+++.
T Consensus 342 ~~~~~A~~~le~al~~~P~~~~~-~~La~~~~~~g~~ 377 (398)
T PRK10747 342 GEWQEASLAFRAALKQRPDAYDY-AWLADALDRLHKP 377 (398)
T ss_pred CCHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHcCCH
Confidence 99999999999999999997763 3667776666554
No 171
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.11 E-value=3.4e-05 Score=78.04 Aligned_cols=115 Identities=23% Similarity=0.231 Sum_probs=92.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------------------------HHHHHHHHHHHHccCH
Q 016973 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSA---------------------------------ELFADRAQASIKLQNF 52 (379)
Q Consensus 6 ~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~---------------------------------~~~~~ra~~~~~lg~~ 52 (379)
+.-+......|+...|..++.+|++.+|++. .+|+.-+....-+++.
T Consensus 588 lM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~ 667 (913)
T KOG0495|consen 588 LMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNV 667 (913)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhH
Confidence 3344556666666666666666666666663 3344445555566889
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973 53 TEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (379)
Q Consensus 53 ~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (379)
++|++.++.+++..|.+.+.|+.+|+++.++++.+.|...|..+++..|+...++..+.+++++.++.
T Consensus 668 eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~ 735 (913)
T KOG0495|consen 668 EEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQL 735 (913)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcch
Confidence 99999999999999999999999999999999999999999999999999999999999998887654
No 172
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.11 E-value=1.5e-05 Score=69.95 Aligned_cols=70 Identities=27% Similarity=0.349 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAY 73 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~ 73 (379)
.|.++|.++++.+.++.||..+.++|+++|.+.-++.+||.+|.++.+|++|+.||.+++.++|....+.
T Consensus 136 ly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear 205 (271)
T KOG4234|consen 136 LYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAR 205 (271)
T ss_pred HHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHH
Confidence 3567899999999999999999999999999999999999999999999999999999999999776443
No 173
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.11 E-value=5.6e-05 Score=70.86 Aligned_cols=101 Identities=14% Similarity=0.134 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHh
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM-SKAYWRKATACMK 82 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~-~~a~~~la~~~~~ 82 (379)
-+.+.|..+....+.+.|+..+.+|+..+|++..+-..+|.++...|+|+.|++.++.+++.+|.+ +++.-.+..||.+
T Consensus 182 fyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~ 261 (389)
T COG2956 182 FYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQ 261 (389)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666666666666666666666666666666666666666666643 4556666666666
Q ss_pred ccCHHHHHHHHHHHHhcCCCCh
Q 016973 83 LEEYETAKVALEKGASLAPGDS 104 (379)
Q Consensus 83 lg~y~~A~~~~~~a~~l~p~~~ 104 (379)
+|+.++.+.++.++.+..++..
T Consensus 262 lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 262 LGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred hCCHHHHHHHHHHHHHccCCcc
Confidence 6666666666666666655543
No 174
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.09 E-value=5.6e-05 Score=74.42 Aligned_cols=108 Identities=19% Similarity=0.193 Sum_probs=98.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHH
Q 016973 11 EAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAK 90 (379)
Q Consensus 11 ~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~ 90 (379)
.+-..++|+.|+.+|++....+|+ +...+|.+++..++..+|++.+.+++...|.+...+...|..|...++|+.|+
T Consensus 178 ~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL 254 (395)
T PF09295_consen 178 YLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELAL 254 (395)
T ss_pred HHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 344567899999999999998875 45568889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHhhh
Q 016973 91 VALEKGASLAPGDSRFTNLIKECEERIAEET 121 (379)
Q Consensus 91 ~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~ 121 (379)
...+++..+.|++...+..++.|.-.+++..
T Consensus 255 ~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e 285 (395)
T PF09295_consen 255 EIAKKAVELSPSEFETWYQLAECYIQLGDFE 285 (395)
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHhcCCHH
Confidence 9999999999999999999999999888873
No 175
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.08 E-value=6.5e-05 Score=70.43 Aligned_cols=114 Identities=15% Similarity=0.202 Sum_probs=89.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973 7 KKAKEAFIDDYFELAYDLYSQAIEISPNS-----AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (379)
Q Consensus 7 ~~g~~~~~~g~y~~Al~~y~~al~~~p~~-----~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~ 81 (379)
..-+.|-...+|..||+.-.+...+.+.. +.+|+.+|..+....+++.|+..+.+|++.+|....+-..+|.++.
T Consensus 146 qLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~ 225 (389)
T COG2956 146 QLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVEL 225 (389)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHH
Confidence 34445555566666666665555555443 5677888888888889999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHhh
Q 016973 82 KLEEYETAKVALEKGASLAPGDS-RFTNLIKECEERIAEE 120 (379)
Q Consensus 82 ~lg~y~~A~~~~~~a~~l~p~~~-~~~~~l~~~~~~l~~~ 120 (379)
..|+|..|+..++.+++.||..- .+...+..|...+++.
T Consensus 226 ~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~ 265 (389)
T COG2956 226 AKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKP 265 (389)
T ss_pred hccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCH
Confidence 99999999999999999998764 4667777787777765
No 176
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.07 E-value=0.00019 Score=65.71 Aligned_cols=118 Identities=20% Similarity=0.178 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWR 75 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~---~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~---~~a~~~ 75 (379)
+..|++.|...++.|+|.+|+..|..+...+|.+ ..+.+.++.++++.++|++|+..+++-+++.|++ .-++|.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 4689999999999999999999999999998877 4678899999999999999999999999999865 457888
Q ss_pred HHHHHHhccC--------HHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHHHh
Q 016973 76 KATACMKLEE--------YETAKVALEKGASLAPGDS---RFTNLIKECEERIAE 119 (379)
Q Consensus 76 la~~~~~lg~--------y~~A~~~~~~a~~l~p~~~---~~~~~l~~~~~~l~~ 119 (379)
+|.+++..-+ -.+|...|+..+...|+.. .+...+..+...|..
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~ 168 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAG 168 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHH
Confidence 8998875432 3578888999999999865 344444444444433
No 177
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.04 E-value=0.00022 Score=66.02 Aligned_cols=114 Identities=14% Similarity=0.083 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccC------------------HHHHHHHHHH
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQN------------------FTEAVADANR 61 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~---~~~~~~ra~~~~~lg~------------------~~eAl~~~~~ 61 (379)
..++..|.++++.++|++|+..|++.+..+|++ ..+++.+|.|++.++. ..+|+..|+.
T Consensus 70 ~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~ 149 (243)
T PRK10866 70 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSK 149 (243)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHH
Confidence 356789999999999999999999999998887 5789999999766541 3578899999
Q ss_pred HHHhCCCC-----------------HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 016973 62 AIELEPSM-----------------SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER 116 (379)
Q Consensus 62 Al~l~p~~-----------------~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 116 (379)
.+...|+. ..--+..|..|++.|.|..|+.-|+.+++..|+.+.....+..+...
T Consensus 150 li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~a 221 (243)
T PRK10866 150 LVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENA 221 (243)
T ss_pred HHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHH
Confidence 99999964 12224567779999999999999999999999888766555554443
No 178
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.02 E-value=6.4e-05 Score=79.18 Aligned_cols=104 Identities=15% Similarity=0.140 Sum_probs=95.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 016973 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQN-FTEAVADANRAIELEPSMSKAYWRKATA 79 (379)
Q Consensus 1 ~A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~-~~eAl~~~~~Al~l~p~~~~a~~~la~~ 79 (379)
|+......|....+.++|++|++...++|+.+|+|..++..+|.++..++. .++|.+.|..|.+++|++..||-.++..
T Consensus 1 ~vK~aLK~Ak~al~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nL 80 (1238)
T KOG1127|consen 1 EVKTALKSAKDALRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNL 80 (1238)
T ss_pred ChhhHHHHHHHHHhhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHH
Confidence 355677789999999999999999999999999999999999999999998 9999999999999999999999999999
Q ss_pred HHh---ccCHHHHHHHHHHHHhcCCCCh
Q 016973 80 CMK---LEEYETAKVALEKGASLAPGDS 104 (379)
Q Consensus 80 ~~~---lg~y~~A~~~~~~a~~l~p~~~ 104 (379)
|.+ .-.++++-.+|++++.+.++..
T Consensus 81 ye~~~dIl~ld~~~~~yq~~~l~le~q~ 108 (1238)
T KOG1127|consen 81 YERYNDILDLDRAAKCYQRAVLILENQS 108 (1238)
T ss_pred HHccchhhhhhHhHHHHHHHHHhhhhhh
Confidence 876 5568899999999998887654
No 179
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.02 E-value=4.2e-05 Score=62.71 Aligned_cols=84 Identities=19% Similarity=0.152 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC---ChHHHHHH
Q 016973 37 ELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRKATACMKLEEYETAKVALEKGASLAPG---DSRFTNLI 110 (379)
Q Consensus 37 ~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~---~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~---~~~~~~~l 110 (379)
.+++.+|.++-.+|+.++|+..|.+++..... -..+++.+|.+|..+|++++|+..|++++...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 46889999999999999999999999998654 3679999999999999999999999999999888 66666666
Q ss_pred HHHHHHHHhh
Q 016973 111 KECEERIAEE 120 (379)
Q Consensus 111 ~~~~~~l~~~ 120 (379)
+.+...++..
T Consensus 82 Al~L~~~gr~ 91 (120)
T PF12688_consen 82 ALALYNLGRP 91 (120)
T ss_pred HHHHHHCCCH
Confidence 6655544443
No 180
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.01 E-value=8e-06 Score=76.90 Aligned_cols=82 Identities=17% Similarity=0.176 Sum_probs=70.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 016973 39 FADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (379)
Q Consensus 39 ~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~ 118 (379)
+-.+|..|+++|+|++||.||.+++.++|.++..+.++|.+|+++++|..|...+..|+.|+-....+...+..+...|+
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 46689999999999999999999999999999999999999999999999999999999998766555555555544444
Q ss_pred hh
Q 016973 119 EE 120 (379)
Q Consensus 119 ~~ 120 (379)
..
T Consensus 180 ~~ 181 (536)
T KOG4648|consen 180 NN 181 (536)
T ss_pred hH
Confidence 43
No 181
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.99 E-value=4.7e-05 Score=76.94 Aligned_cols=118 Identities=14% Similarity=0.045 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~ 82 (379)
+.+...|..+...|+-++|..+...+++.++.+..+|.-+|..+..-++|++|+.+|..|+.+.|++-..++-++....+
T Consensus 42 eslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Q 121 (700)
T KOG1156|consen 42 ESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQ 121 (700)
T ss_pred hhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 34566788888899999999999999999998888888899998888999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (379)
Q Consensus 83 lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (379)
+++|+-....-.+.+++.|+....+...+..+-.++..
T Consensus 122 mRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y 159 (700)
T KOG1156|consen 122 MRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEY 159 (700)
T ss_pred HHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999888888888888888877766666666655554
No 182
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.96 E-value=0.00022 Score=72.81 Aligned_cols=97 Identities=20% Similarity=0.118 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l 83 (379)
.++-.|..+-..|+|++|+.++++||...|..+++|+.+|.+|-+.|++.+|...++.|..++..+.-..-..+..+++.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHC
Confidence 34667888999999999999999999999999999999999999999999999999999999999988888899999999
Q ss_pred cCHHHHHHHHHHHHhcC
Q 016973 84 EEYETAKVALEKGASLA 100 (379)
Q Consensus 84 g~y~~A~~~~~~a~~l~ 100 (379)
|+.++|...+....+-+
T Consensus 276 ~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 276 GRIEEAEKTASLFTRED 292 (517)
T ss_pred CCHHHHHHHHHhhcCCC
Confidence 99999999988776655
No 183
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.96 E-value=2e-05 Score=52.53 Aligned_cols=42 Identities=26% Similarity=0.238 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 016973 37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT 78 (379)
Q Consensus 37 ~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~ 78 (379)
.+++.+|.+|..+|++++|++.|+++++.+|+++.+++.+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 345556666666666666666666666666666666665553
No 184
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.94 E-value=6e-05 Score=71.53 Aligned_cols=89 Identities=16% Similarity=0.209 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCH-HHHHHHHHH
Q 016973 17 YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY-ETAKVALEK 95 (379)
Q Consensus 17 ~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y-~~A~~~~~~ 95 (379)
.+.+|.-.|++.....+.++..+..+|.|++++|+|++|...+..|+..+|.++.++.+++.+...+|+. +.+..++.+
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 3555555555544444455555555555555555555555555555555555555555555555555555 334445555
Q ss_pred HHhcCCCChH
Q 016973 96 GASLAPGDSR 105 (379)
Q Consensus 96 a~~l~p~~~~ 105 (379)
....+|+++-
T Consensus 262 L~~~~p~h~~ 271 (290)
T PF04733_consen 262 LKQSNPNHPL 271 (290)
T ss_dssp CHHHTTTSHH
T ss_pred HHHhCCCChH
Confidence 5555555543
No 185
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.94 E-value=1.3e-05 Score=49.97 Aligned_cols=32 Identities=28% Similarity=0.505 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC
Q 016973 71 KAYWRKATACMKLEEYETAKVALEKGASLAPG 102 (379)
Q Consensus 71 ~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~ 102 (379)
.+|+++|.+|+.+|+|++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45666666666666666666666666666654
No 186
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.94 E-value=0.00029 Score=59.48 Aligned_cols=95 Identities=21% Similarity=0.194 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHccCHHHHHHHHHH
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----------------------AELFADRAQASIKLQNFTEAVADANR 61 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~----------------------~~~~~~ra~~~~~lg~~~eAl~~~~~ 61 (379)
.+...|......++...++..|.+++.+.... ..++..++.++...|++++|+..+.+
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR 87 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 44566777888999999999999999983221 34556677778889999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 016973 62 AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGAS 98 (379)
Q Consensus 62 Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~ 98 (379)
++.++|.+-.+|..+-.+|..+|++..|+..|+++..
T Consensus 88 ~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 88 ALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988754
No 187
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.90 E-value=2.4e-05 Score=48.61 Aligned_cols=34 Identities=29% Similarity=0.457 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC
Q 016973 70 SKAYWRKATACMKLEEYETAKVALEKGASLAPGD 103 (379)
Q Consensus 70 ~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~ 103 (379)
+.+++.+|.+++.+|+|++|+.+|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3567777777777777777777777777777764
No 188
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.89 E-value=1.3e-05 Score=50.30 Aligned_cols=32 Identities=34% Similarity=0.649 Sum_probs=15.9
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCHHHHH
Q 016973 25 YSQAIEISPNSAELFADRAQASIKLQNFTEAV 56 (379)
Q Consensus 25 y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl 56 (379)
|++||+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44455555555555555555555555554443
No 189
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.88 E-value=0.00014 Score=73.67 Aligned_cols=114 Identities=18% Similarity=0.059 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l 83 (379)
.|+..++..-..++.++|++++.++|...|...-+|+.+|+++.++++.+.|...|...++..|..+..|+.++.+-...
T Consensus 653 v~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~ 732 (913)
T KOG0495|consen 653 VWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKD 732 (913)
T ss_pred hhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHh
Confidence 45566677778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 016973 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (379)
Q Consensus 84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l 117 (379)
|+.-.|...|.++.-.+|.+..++...-+++.+.
T Consensus 733 ~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~ 766 (913)
T KOG0495|consen 733 GQLVRARSILDRARLKNPKNALLWLESIRMELRA 766 (913)
T ss_pred cchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHc
Confidence 9999999999999999999987644444443333
No 190
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.88 E-value=0.00011 Score=69.63 Aligned_cols=103 Identities=21% Similarity=0.227 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------
Q 016973 2 ATDLEKKAKEAFID-DYFELAYDLYSQAIEISPN--S----AELFADRAQASIKLQNFTEAVADANRAIELEPS------ 68 (379)
Q Consensus 2 A~~l~~~g~~~~~~-g~y~~Al~~y~~al~~~p~--~----~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~------ 68 (379)
|..+...|..+... |+++.|+++|.+|+.+... . ..++.+.|.++.++|+|++|+..|+++....-.
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~ 193 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY 193 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence 45677788888888 9999999999999998221 2 467889999999999999999999999876421
Q ss_pred -CHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCh
Q 016973 69 -MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS 104 (379)
Q Consensus 69 -~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~ 104 (379)
....+++.++|++.+|++..|...|.+....+|.-.
T Consensus 194 ~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 194 SAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 124567888999999999999999999999998543
No 191
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.88 E-value=5.6e-05 Score=77.38 Aligned_cols=99 Identities=15% Similarity=0.148 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~ 82 (379)
..|+..|.++.+.++++.|..+|.+++.++|++.++|.|++.+|+++++-.+|...+.+|+..+-.++..|.+.-.....
T Consensus 520 ~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvd 599 (777)
T KOG1128|consen 520 GTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVD 599 (777)
T ss_pred hHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhcCC
Q 016973 83 LEEYETAKVALEKGASLAP 101 (379)
Q Consensus 83 lg~y~~A~~~~~~a~~l~p 101 (379)
.|.+++|+.+|.+.+.+.-
T Consensus 600 vge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 600 VGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred cccHHHHHHHHHHHHHhhh
Confidence 9999999999999888754
No 192
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.87 E-value=0.00014 Score=68.02 Aligned_cols=84 Identities=10% Similarity=-0.012 Sum_probs=69.8
Q ss_pred HHHHHHHHHHH-HHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChH---HHH
Q 016973 36 AELFADRAQAS-IKLQNFTEAVADANRAIELEPSM---SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR---FTN 108 (379)
Q Consensus 36 ~~~~~~ra~~~-~~lg~~~eAl~~~~~Al~l~p~~---~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~---~~~ 108 (379)
....+..|..+ ++.|+|++|+..|...+...|+. +.++|.+|.+|+..|+|++|+..|++++...|+++. ++.
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 46778888887 56799999999999999999987 589999999999999999999999999999998654 444
Q ss_pred HHHHHHHHHHh
Q 016973 109 LIKECEERIAE 119 (379)
Q Consensus 109 ~l~~~~~~l~~ 119 (379)
.++.+...+++
T Consensus 222 klg~~~~~~g~ 232 (263)
T PRK10803 222 KVGVIMQDKGD 232 (263)
T ss_pred HHHHHHHHcCC
Confidence 44555544433
No 193
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=0.00018 Score=66.88 Aligned_cols=111 Identities=18% Similarity=0.138 Sum_probs=95.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHH
Q 016973 11 EAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAK 90 (379)
Q Consensus 11 ~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~ 90 (379)
.+.+..+|.+||++++--.+.+|.+-..+..+|.||+...+|..|..+|+..-.+.|...+..+..|+.+++.+.|.+|+
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcccC
Q 016973 91 VALEKGASLAPGDSRFTNLIKECEERIAEETGELQ 125 (379)
Q Consensus 91 ~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~~~~ 125 (379)
...... .+++.+....-+++..+.-+.++.+
T Consensus 99 rV~~~~----~D~~~L~~~~lqLqaAIkYse~Dl~ 129 (459)
T KOG4340|consen 99 RVAFLL----LDNPALHSRVLQLQAAIKYSEGDLP 129 (459)
T ss_pred HHHHHh----cCCHHHHHHHHHHHHHHhcccccCc
Confidence 765543 3446666667777777777654443
No 194
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.84 E-value=1.8e-05 Score=49.71 Aligned_cols=33 Identities=33% Similarity=0.436 Sum_probs=31.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHH
Q 016973 58 DANRAIELEPSMSKAYWRKATACMKLEEYETAK 90 (379)
Q Consensus 58 ~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~ 90 (379)
+|++||+++|+++.+|+++|.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 378999999999999999999999999999996
No 195
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=0.00012 Score=69.43 Aligned_cols=105 Identities=15% Similarity=0.137 Sum_probs=83.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHH
Q 016973 10 KEAFIDDYFELAYDLYSQAIEISPNSA-ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYET 88 (379)
Q Consensus 10 ~~~~~~g~y~~Al~~y~~al~~~p~~~-~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~ 88 (379)
..+..+.+|..|+.+++-.+..+.... ..-..+|.|++++|+|++|+..|..+..-+....+.+.++|.|+|.+|.|.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence 457788999999999998887755443 5677799999999999999999999988777788999999999999999999
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 016973 89 AKVALEKGASLAPGDSRFTNLIKECEERIA 118 (379)
Q Consensus 89 A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~ 118 (379)
|.....+| |.++-..+.+-.+..+++
T Consensus 110 A~~~~~ka----~k~pL~~RLlfhlahkln 135 (557)
T KOG3785|consen 110 AKSIAEKA----PKTPLCIRLLFHLAHKLN 135 (557)
T ss_pred HHHHHhhC----CCChHHHHHHHHHHHHhC
Confidence 98876654 555544444433333333
No 196
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.82 E-value=0.00026 Score=56.98 Aligned_cols=95 Identities=22% Similarity=0.199 Sum_probs=76.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------
Q 016973 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPN------------SAELFADRAQASIKLQNFTEAVADANRAIELE------ 66 (379)
Q Consensus 5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~------------~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~------ 66 (379)
....|...+..|.|++|..-|.+|+...-. +..++..++.++..+|+|++++....+++...
T Consensus 12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL 91 (144)
T PF12968_consen 12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL 91 (144)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Confidence 456788889999999999999999998322 14566778899999999999999999998653
Q ss_pred -CC----CHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 016973 67 -PS----MSKAYWRKATACMKLEEYETAKVALEKGASL 99 (379)
Q Consensus 67 -p~----~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l 99 (379)
.+ .+.+.|++|+++..+|+.++|+..|+.+-++
T Consensus 92 ~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 92 HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 32 4667899999999999999999999988654
No 197
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.82 E-value=0.00018 Score=68.27 Aligned_cols=114 Identities=16% Similarity=0.098 Sum_probs=85.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 016973 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ--NFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (379)
Q Consensus 6 ~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg--~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l 83 (379)
.-.-.+++..++++.|.+.+..+-+.+.++....+.-|.+.+..| ++.+|...|+......+..+..+..+|.|+..+
T Consensus 135 al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~ 214 (290)
T PF04733_consen 135 ALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQL 214 (290)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh
Confidence 345568889999999999998887777665444444444444445 699999999998777778899999999999999
Q ss_pred cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (379)
Q Consensus 84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~ 119 (379)
|+|++|...+.+++..+|+++.....+.-|...++.
T Consensus 215 ~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk 250 (290)
T PF04733_consen 215 GHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGK 250 (290)
T ss_dssp T-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999877766666555444
No 198
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.79 E-value=4.5e-05 Score=47.52 Aligned_cols=32 Identities=31% Similarity=0.537 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 016973 37 ELFADRAQASIKLQNFTEAVADANRAIELEPS 68 (379)
Q Consensus 37 ~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~ 68 (379)
.+|+++|.+|..+|++++|+.+|++|++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45667777777777777777777777777664
No 199
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.00012 Score=62.24 Aligned_cols=78 Identities=17% Similarity=0.222 Sum_probs=69.6
Q ss_pred ccccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcCC---------------CceeeeccccccccccCcceEEEe
Q 016973 181 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG---------------EEAYHFQPRLFGKIIPAKCRYEVL 245 (379)
Q Consensus 181 ~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~---------------~~~~~~~~~L~~~I~p~~s~~~v~ 245 (379)
|+.+++++.+.|++-++|+.+++|.|.+.++.|+|+....+ ...|.-.+.|...|+|+..+-+..
T Consensus 43 vdi~e~~~~~~I~~elPG~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~~A~~~ 122 (146)
T COG0071 43 VDIEETDDEYRITAELPGVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVIKAKYK 122 (146)
T ss_pred EEEEEcCCEEEEEEEcCCCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccceeeEee
Confidence 88999999999999999999999999999999999986543 124777889999999998899999
Q ss_pred CcEEEEEEeecCC
Q 016973 246 STKVEIRLAKAEP 258 (379)
Q Consensus 246 ~~kiei~L~K~~~ 258 (379)
+.-+.|+|.|..+
T Consensus 123 nGvL~I~lpk~~~ 135 (146)
T COG0071 123 NGLLTVTLPKAEP 135 (146)
T ss_pred CcEEEEEEecccc
Confidence 9999999999764
No 200
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.78 E-value=5.4e-05 Score=50.38 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 016973 70 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE 112 (379)
Q Consensus 70 ~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~ 112 (379)
+.+++.+|.+|.++|++++|+..|+++++.+|++..++..++.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 4689999999999999999999999999999999998777654
No 201
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.001 Score=62.00 Aligned_cols=98 Identities=20% Similarity=0.100 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHH-----------------------
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN----------------------- 60 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~----------------------- 60 (379)
.-+..|..+...|++.+|...|..++...|.+..+...++.||...|+.+.|...+.
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~q 215 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQ 215 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHH
Confidence 456788899999999999999999999999999999999999999999876543332
Q ss_pred -----------HHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 016973 61 -----------RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP 101 (379)
Q Consensus 61 -----------~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p 101 (379)
+.+..+|++..+-+.+|..|...|+++.|...+-..++.+-
T Consensus 216 aa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 216 AAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR 267 (304)
T ss_pred HhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 22233688999999999999999999999998888777754
No 202
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=0.00027 Score=70.91 Aligned_cols=101 Identities=18% Similarity=0.185 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH---------------------------------HHHHHHHHc
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFA---------------------------------DRAQASIKL 49 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~---------------------------------~ra~~~~~l 49 (379)
.+++..-+.+...|+|++|+...+++|...|++..++. .+|.|++++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence 46677777888888888888888888888777644444 455555555
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHH
Q 016973 50 QNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRF 106 (379)
Q Consensus 50 g~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~ 106 (379)
++.++|+.++. .+++.+......+|+++|++|+|++|+..|+...+.+-++.+.
T Consensus 93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~ 146 (652)
T KOG2376|consen 93 NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDE 146 (652)
T ss_pred ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHH
Confidence 55555555554 3444555677777888888888888888888777766655543
No 203
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=0.00042 Score=65.81 Aligned_cols=114 Identities=18% Similarity=0.105 Sum_probs=88.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH--------------HhCC----
Q 016973 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAI--------------ELEP---- 67 (379)
Q Consensus 6 ~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al--------------~l~p---- 67 (379)
...|.++|..|+|++|+..|+-+...+..+.++..++|.|++-+|.|.+|.....+|- +++.
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~ 140 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRI 140 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHH
Confidence 4578999999999999999999999877788999999999999999999877655432 2221
Q ss_pred --------CCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973 68 --------SMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (379)
Q Consensus 68 --------~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~ 119 (379)
+..+-.+.+|.+++..-.|.+|+..|.+++.-+|+-..+.-.++.|..++.-
T Consensus 141 ~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDY 200 (557)
T KOG3785|consen 141 LTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDY 200 (557)
T ss_pred HHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcch
Confidence 1234456677777777888999999999888888877777777777665443
No 204
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.71 E-value=0.00039 Score=69.86 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=16.9
Q ss_pred HHHHHHHHhccCHHHHHHHHH
Q 016973 74 WRKATACMKLEEYETAKVALE 94 (379)
Q Consensus 74 ~~la~~~~~lg~y~~A~~~~~ 94 (379)
|.+|.|+|+++..++|+.++.
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~ 103 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK 103 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh
Confidence 677888888888888888777
No 205
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.66 E-value=0.00025 Score=49.15 Aligned_cols=49 Identities=22% Similarity=0.312 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973 71 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (379)
Q Consensus 71 ~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~ 119 (379)
+.+|.+|+.++++|+|..|..+...+++++|+|.++......++.++..
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~k 50 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQK 50 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhc
Confidence 4678899999999999999999999999999999999888888887765
No 206
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=97.65 E-value=0.00025 Score=55.24 Aligned_cols=75 Identities=15% Similarity=0.192 Sum_probs=63.2
Q ss_pred ccccccCCeEEEEEEeCCCCCCceEEEEeec-EEEEEEEcC-----C----------CceeeeccccccccccCcceEEE
Q 016973 181 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQ-ILSVSIDVP-----G----------EEAYHFQPRLFGKIIPAKCRYEV 244 (379)
Q Consensus 181 ~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~-~l~v~~~~~-----~----------~~~~~~~~~L~~~I~p~~s~~~v 244 (379)
++|+++++.+.|.+.++|+.++++.|.+..+ .|+|+.... . ...|.-.+.|-..|+++..+.+.
T Consensus 2 ~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~~ 81 (92)
T cd06472 2 VDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAFL 81 (92)
T ss_pred ccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEEE
Confidence 7899999999999999999999999999874 788886421 1 11466778999999999989999
Q ss_pred eCcEEEEEEee
Q 016973 245 LSTKVEIRLAK 255 (379)
Q Consensus 245 ~~~kiei~L~K 255 (379)
.+.-++|+|.|
T Consensus 82 ~nGvL~I~lPK 92 (92)
T cd06472 82 ENGVLTVTVPK 92 (92)
T ss_pred ECCEEEEEecC
Confidence 99999999876
No 207
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.63 E-value=0.00098 Score=55.91 Aligned_cols=71 Identities=24% Similarity=0.239 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChH
Q 016973 35 SAELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR 105 (379)
Q Consensus 35 ~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~---~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~ 105 (379)
.+..++..|...++.|+|.+|+..|+.+....|. -..+.+.+|.+|+..++|.+|+..+++.++|+|.++.
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 3667899999999999999999999999998874 5689999999999999999999999999999999886
No 208
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.00016 Score=67.14 Aligned_cols=92 Identities=23% Similarity=0.265 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CC---------
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE----PS--------- 68 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~----p~--------- 68 (379)
|+.+++.|..+|+.|+|+.|++-|+.|++...-++.+-++.|.|+++.++|..|+.....++... |.
T Consensus 144 Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~teg 223 (459)
T KOG4340|consen 144 ADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEG 223 (459)
T ss_pred cchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceecc
Confidence 34566777788888888888888888888877777777888888888888888888777766542 31
Q ss_pred ----------------CHHHHHHHHHHHHhccCHHHHHHHH
Q 016973 69 ----------------MSKAYWRKATACMKLEEYETAKVAL 93 (379)
Q Consensus 69 ----------------~~~a~~~la~~~~~lg~y~~A~~~~ 93 (379)
..+++...+-++|+.|+|+.|.+.+
T Consensus 224 iDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaL 264 (459)
T KOG4340|consen 224 IDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEAL 264 (459)
T ss_pred CchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHh
Confidence 1345555666677777777766554
No 209
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.60 E-value=0.00031 Score=62.55 Aligned_cols=100 Identities=14% Similarity=0.170 Sum_probs=86.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----------
Q 016973 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM----------- 69 (379)
Q Consensus 1 ~A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~----------- 69 (379)
|++.+.-.|.-+...|+|+.|++.|+-.++++|.+-.+..|||.+++--|+|.-|.+++..-.+-+|++
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 677888899999999999999999999999999999999999999999999999999988777666531
Q ss_pred -----------------------------------------------------------HHHHHHHHHHHHhccCHHHHH
Q 016973 70 -----------------------------------------------------------SKAYWRKATACMKLEEYETAK 90 (379)
Q Consensus 70 -----------------------------------------------------------~~a~~~la~~~~~lg~y~~A~ 90 (379)
.+.+|.+|..+..+|+.++|.
T Consensus 178 ~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~ 257 (297)
T COG4785 178 QKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEAT 257 (297)
T ss_pred hhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 346688888888888899998
Q ss_pred HHHHHHHhcC
Q 016973 91 VALEKGASLA 100 (379)
Q Consensus 91 ~~~~~a~~l~ 100 (379)
..|+-++..+
T Consensus 258 ~LfKLaiann 267 (297)
T COG4785 258 ALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHh
Confidence 8888777554
No 210
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.58 E-value=0.00018 Score=44.52 Aligned_cols=32 Identities=34% Similarity=0.487 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 016973 37 ELFADRAQASIKLQNFTEAVADANRAIELEPS 68 (379)
Q Consensus 37 ~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~ 68 (379)
.+++.+|.+++.+|++++|+.+|.+++.++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 211
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.58 E-value=0.00033 Score=66.26 Aligned_cols=98 Identities=23% Similarity=0.188 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CCH
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISP--NS----AELFADRAQASIKLQNFTEAVADANRAIELEP------SMS 70 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p--~~----~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p------~~~ 70 (379)
+.+...|+.+-..++|.+|..+|.++....- .+ ...|..-+.||.+. ++++|+.+|.+|+.+.- .-+
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA 114 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAA 114 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 4556678889999999999999999988732 11 45677777777665 99999999999998732 236
Q ss_pred HHHHHHHHHHHhc-cCHHHHHHHHHHHHhcCC
Q 016973 71 KAYWRKATACMKL-EEYETAKVALEKGASLAP 101 (379)
Q Consensus 71 ~a~~~la~~~~~l-g~y~~A~~~~~~a~~l~p 101 (379)
.++.++|.+|... |++++|+.+|++|..+..
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~ 146 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYE 146 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 7899999999998 999999999999999854
No 212
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.55 E-value=0.0015 Score=68.47 Aligned_cols=107 Identities=13% Similarity=0.040 Sum_probs=92.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHH
Q 016973 9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYET 88 (379)
Q Consensus 9 g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~ 88 (379)
-......+++..|+....+.++..|+...+....|..++++|++++|..+++..-...+++-..+-.+-.||..++++++
T Consensus 16 i~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 16 IYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhH
Confidence 34567889999999999999999999999999999999999999999988877777777888888889999999999999
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 016973 89 AKVALEKGASLAPGDSRFTNLIKECEER 116 (379)
Q Consensus 89 A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 116 (379)
|..+|+++..-+|+ .+....+-.+.-+
T Consensus 96 ~~~~Ye~~~~~~P~-eell~~lFmayvR 122 (932)
T KOG2053|consen 96 AVHLYERANQKYPS-EELLYHLFMAYVR 122 (932)
T ss_pred HHHHHHHHHhhCCc-HHHHHHHHHHHHH
Confidence 99999999999999 5555554444433
No 213
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.54 E-value=0.00046 Score=70.68 Aligned_cols=67 Identities=18% Similarity=0.098 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSK 71 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~ 71 (379)
.+...|..+...|++++|...|++|+.++| +..+|..+|.++...|++++|+..|.+|+.++|..+.
T Consensus 422 ~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 422 IYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 355567788889999999999999999999 5889999999999999999999999999999998875
No 214
>KOG4379 consensus Uncharacterized conserved protein (tumor antigen CML66 in humans) [Function unknown]
Probab=97.54 E-value=0.00014 Score=70.48 Aligned_cols=86 Identities=15% Similarity=0.232 Sum_probs=72.7
Q ss_pred ccccccccCCeEEEEEEeCC-CCCCceEEEEeecEEEEEEEcCCCceeeeccccccccccCcceEEEeC-cEEEEEEeec
Q 016973 179 LMHEFYQKPEEVVVTVFAKG-IPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLS-TKVEIRLAKA 256 (379)
Q Consensus 179 ~~~~W~Qt~~~V~i~i~~k~-~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~-~kiei~L~K~ 256 (379)
+.|.|.||.+.|.|++.+.. ++..++.|.+..+.|.+.+. .+-.|+..||+.|.-|.|.|.|.. .++|+.|.|+
T Consensus 290 p~y~w~qt~d~~~~~~~~p~~~~~~~i~Iq~~~~~v~v~~~----dh~~~~g~lyasv~he~s~~ii~ean~Le~sl~K~ 365 (596)
T KOG4379|consen 290 PSYSWSQTDDNVLIRFNVPSTASAKEINIQGSKTTVVVKHL----DHVIFDGELYASVGHELSAFIIAEANGLELSLTKA 365 (596)
T ss_pred ccceeeeccCcceEEEecccccccceEEEEecCceEEEEee----eeEEeccchhhhccccchhhhhhhhccceEEEeec
Confidence 44889999999999998865 66789999999998877764 245678899999999999999977 7999999999
Q ss_pred CC-CCCCccccCC
Q 016973 257 EP-IQWSSLEFSK 268 (379)
Q Consensus 257 ~~-~~W~~L~~~~ 268 (379)
+. ..|++|-..+
T Consensus 366 de~~twprL~~~d 378 (596)
T KOG4379|consen 366 DEIQTWPRLFAQD 378 (596)
T ss_pred ccccccchheeec
Confidence 54 7899998654
No 215
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.47 E-value=0.00086 Score=58.20 Aligned_cols=69 Identities=20% Similarity=0.239 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-----------HHHHHHHHH
Q 016973 2 ATDLEKKAKEAFID----------DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQN-----------FTEAVADAN 60 (379)
Q Consensus 2 A~~l~~~g~~~~~~----------g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~-----------~~eAl~~~~ 60 (379)
++.|.+-|..+... .-+++|+.-|++||.++|+...+++++|.+|..++. |++|..+|.
T Consensus 25 adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~Fq 104 (186)
T PF06552_consen 25 ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQ 104 (186)
T ss_dssp HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Confidence 45666666666554 345788999999999999999999999999988743 788899999
Q ss_pred HHHHhCCCCH
Q 016973 61 RAIELEPSMS 70 (379)
Q Consensus 61 ~Al~l~p~~~ 70 (379)
+|+.++|.+.
T Consensus 105 kAv~~~P~ne 114 (186)
T PF06552_consen 105 KAVDEDPNNE 114 (186)
T ss_dssp HHHHH-TT-H
T ss_pred HHHhcCCCcH
Confidence 9999999776
No 216
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.44 E-value=0.0048 Score=53.06 Aligned_cols=98 Identities=27% Similarity=0.277 Sum_probs=53.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHccCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHH
Q 016973 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQ-ASIKLQNFTEAVADANRAIELEP---SMSKAYWRKATAC 80 (379)
Q Consensus 5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~-~~~~lg~~~eAl~~~~~Al~l~p---~~~~a~~~la~~~ 80 (379)
+...|..+...+++..|+..+..++...+.+.......+. ++...|+++.|+..+.+++.+.+ .....++.++..+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (291)
T COG0457 98 LLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALL 177 (291)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHH
Confidence 4445555555555666666666666555544333333343 55556666666666666555444 2344444455555
Q ss_pred HhccCHHHHHHHHHHHHhcCCC
Q 016973 81 MKLEEYETAKVALEKGASLAPG 102 (379)
Q Consensus 81 ~~lg~y~~A~~~~~~a~~l~p~ 102 (379)
...+++..|+..+.+++...+.
T Consensus 178 ~~~~~~~~a~~~~~~~~~~~~~ 199 (291)
T COG0457 178 EALGRYEEALELLEKALKLNPD 199 (291)
T ss_pred HHhcCHHHHHHHHHHHHhhCcc
Confidence 5555666666666666655555
No 217
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.42 E-value=0.0014 Score=52.29 Aligned_cols=92 Identities=22% Similarity=0.239 Sum_probs=78.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHhCCCCHHHH
Q 016973 8 KAKEAFIDDYFELAYDLYSQAIEISPNSA---ELFADRAQASIKLQ-----------NFTEAVADANRAIELEPSMSKAY 73 (379)
Q Consensus 8 ~g~~~~~~g~y~~Al~~y~~al~~~p~~~---~~~~~ra~~~~~lg-----------~~~eAl~~~~~Al~l~p~~~~a~ 73 (379)
+|..++.+|++-+|+++.+..+..++++. .++..-|.+++++. -+-.|+++|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 57889999999999999999999988775 56666777776663 24579999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHhc
Q 016973 74 WRKATACMKLEEYETAKVALEKGASL 99 (379)
Q Consensus 74 ~~la~~~~~lg~y~~A~~~~~~a~~l 99 (379)
|.+|.-+-....|+++..-.++++..
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 99998888888888888888888765
No 218
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.40 E-value=0.0053 Score=59.23 Aligned_cols=118 Identities=14% Similarity=0.099 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP-SMSKAYWRKATACM 81 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p-~~~~a~~~la~~~~ 81 (379)
......|..-+..|+|..|..+..++-+..+....+|..-|.+..++|+++.|-.++.++-++.+ +.-.+.+.++..+.
T Consensus 85 ~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll 164 (400)
T COG3071 85 RKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL 164 (400)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 44567788889999999999999998888888788888888899999999999999999988843 35577888999999
Q ss_pred hccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (379)
Q Consensus 82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (379)
..|+|..|.....++++..|.++.+.....++...++.-
T Consensus 165 ~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~ 203 (400)
T COG3071 165 NRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAW 203 (400)
T ss_pred hCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccH
Confidence 999999999999999999999999888888887776664
No 219
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.00023 Score=67.62 Aligned_cols=117 Identities=21% Similarity=0.264 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------C--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISP-----------N--------SAELFADRAQASIKLQNFTEAVADANRAIE 64 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p-----------~--------~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~ 64 (379)
...+.|+..|+.++|..|+.-|.+++..-. + -...+.+.+.|.++++.+..|+-....+++
T Consensus 224 ~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~ 303 (372)
T KOG0546|consen 224 KKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALR 303 (372)
T ss_pred hhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccc
Confidence 345678899999999999999999988622 1 134566788999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973 65 LEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (379)
Q Consensus 65 l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (379)
.++....+|||++..+..+.++++|+..+..+....|++..+...+......+.+.
T Consensus 304 ~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~ 359 (372)
T KOG0546|consen 304 DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQY 359 (372)
T ss_pred cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHH
Confidence 99999999999999999999999999999999999999999888888777776665
No 220
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.39 E-value=0.0032 Score=55.34 Aligned_cols=99 Identities=13% Similarity=0.043 Sum_probs=79.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (379)
Q Consensus 5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~---~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~ 81 (379)
....|..++..+++++|+..++.++....+. ..+-.++|.+++++|.+++|+..++....-+ -.+...-.+|.++.
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill 170 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILL 170 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHH
Confidence 4667889999999999999999999764332 4567889999999999999998776543221 12345677999999
Q ss_pred hccCHHHHHHHHHHHHhcCCCCh
Q 016973 82 KLEEYETAKVALEKGASLAPGDS 104 (379)
Q Consensus 82 ~lg~y~~A~~~~~~a~~l~p~~~ 104 (379)
..|+-++|+..|++++..+++..
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 171 AKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HcCchHHHHHHHHHHHHccCChH
Confidence 99999999999999999985443
No 221
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=97.39 E-value=0.0008 Score=51.35 Aligned_cols=74 Identities=19% Similarity=0.284 Sum_probs=63.9
Q ss_pred cccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcCC--------------CceeeeccccccccccCcceEEEeCc
Q 016973 182 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG--------------EEAYHFQPRLFGKIIPAKCRYEVLST 247 (379)
Q Consensus 182 ~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~--------------~~~~~~~~~L~~~I~p~~s~~~v~~~ 247 (379)
+++++++.+.|.|.++|+.++++.|.+..+.|.|+..... ...|...+.|-..|+++..+..+.+.
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~G 80 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLENG 80 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEeCC
Confidence 4678899999999999999999999999999999864321 23588888999999999999999999
Q ss_pred EEEEEEee
Q 016973 248 KVEIRLAK 255 (379)
Q Consensus 248 kiei~L~K 255 (379)
-++|++.|
T Consensus 81 ~L~I~~pk 88 (88)
T cd06464 81 VLTITLPK 88 (88)
T ss_pred EEEEEEcC
Confidence 99998875
No 222
>PRK10941 hypothetical protein; Provisional
Probab=97.38 E-value=0.0017 Score=60.80 Aligned_cols=77 Identities=12% Similarity=0.099 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 016973 37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (379)
Q Consensus 37 ~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~ 113 (379)
..+.++=.+|.+.++++.|+.+.++.+.++|+++.-+.-+|.+|.++|++..|...|+..++..|+++........+
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 34566778889999999999999999999999999999999999999999999999999999999999765444433
No 223
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=97.37 E-value=0.0011 Score=52.46 Aligned_cols=77 Identities=16% Similarity=0.251 Sum_probs=61.3
Q ss_pred cccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcC----CC---------ceeeeccccccccccCcceEEEeCcE
Q 016973 182 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP----GE---------EAYHFQPRLFGKIIPAKCRYEVLSTK 248 (379)
Q Consensus 182 ~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~----~~---------~~~~~~~~L~~~I~p~~s~~~v~~~k 248 (379)
||+++++.+.|.+.++|+.++++.|.+.++.|.|+.... ++ ..|.-.+.|-..|++++.+.++....
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~~Gv 80 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYENGV 80 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEETTSE
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEecCCE
Confidence 689999999999999999999999999999999886433 11 24666788999999999999998899
Q ss_pred EEEEEeecCC
Q 016973 249 VEIRLAKAEP 258 (379)
Q Consensus 249 iei~L~K~~~ 258 (379)
+.|++.|...
T Consensus 81 L~I~~pk~~~ 90 (102)
T PF00011_consen 81 LTITIPKKEE 90 (102)
T ss_dssp EEEEEEBSSS
T ss_pred EEEEEEcccc
Confidence 9999999754
No 224
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.31 E-value=0.00036 Score=43.25 Aligned_cols=32 Identities=31% Similarity=0.476 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC
Q 016973 71 KAYWRKATACMKLEEYETAKVALEKGASLAPG 102 (379)
Q Consensus 71 ~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~ 102 (379)
++|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45667777777777777777777777766663
No 225
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=97.31 E-value=0.0014 Score=63.50 Aligned_cols=94 Identities=18% Similarity=0.249 Sum_probs=77.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CC----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 016973 5 LEKKAKEAFIDDYFELAYDLYSQAIEISP--------NS----------AELFADRAQASIKLQNFTEAVADANRAIELE 66 (379)
Q Consensus 5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p--------~~----------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~ 66 (379)
....|..+|++++|..|+--|.-||++-. .. ...-..+..||+++++.+-|+....+.|.++
T Consensus 179 AL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ln 258 (569)
T PF15015_consen 179 ALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLN 258 (569)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcC
Confidence 34567788888888888888888887721 11 2234568999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 016973 67 PSMSKAYWRKATACMKLEEYETAKVALEKGAS 98 (379)
Q Consensus 67 p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~ 98 (379)
|.+..-|++.|.|+..+.+|.+|...+-.+.-
T Consensus 259 P~~frnHLrqAavfR~LeRy~eAarSamia~y 290 (569)
T PF15015_consen 259 PSYFRNHLRQAAVFRRLERYSEAARSAMIADY 290 (569)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999877665543
No 226
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.00025 Score=63.96 Aligned_cols=79 Identities=15% Similarity=0.271 Sum_probs=69.1
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 016973 40 ADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (379)
Q Consensus 40 ~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~ 118 (379)
-.-|.+++.-.+|..|+.+|.+||.++|..+..|-+++.||+++.+++.+...++++++++|+.......++.+.....
T Consensus 14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 14 KEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK 92 (284)
T ss_pred HhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc
Confidence 3456777788899999999999999999999999999999999999999999999999999998877766666654433
No 227
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=97.30 E-value=0.0011 Score=51.65 Aligned_cols=74 Identities=14% Similarity=0.206 Sum_probs=60.1
Q ss_pred ccccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcCC--------C---------ceeeeccccccccccCcceEE
Q 016973 181 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG--------E---------EAYHFQPRLFGKIIPAKCRYE 243 (379)
Q Consensus 181 ~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~--------~---------~~~~~~~~L~~~I~p~~s~~~ 243 (379)
.+++++++.+.|.+.++|+.++++.|++..+.|.|+..... + ..|.-.+.|- .|+++..+.+
T Consensus 3 ~di~e~~~~~~i~~~lPGv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i~A~ 81 (93)
T cd06471 3 TDIKETDDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEIKAK 81 (93)
T ss_pred eeEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHCEEE
Confidence 78999999999999999999999999999999999764321 1 0244445564 7889889999
Q ss_pred EeCcEEEEEEee
Q 016973 244 VLSTKVEIRLAK 255 (379)
Q Consensus 244 v~~~kiei~L~K 255 (379)
..+.-+.|+|.|
T Consensus 82 ~~dGvL~I~lPK 93 (93)
T cd06471 82 YENGVLKITLPK 93 (93)
T ss_pred EECCEEEEEEcC
Confidence 998899999876
No 228
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=97.28 E-value=0.0053 Score=50.74 Aligned_cols=87 Identities=16% Similarity=0.218 Sum_probs=73.8
Q ss_pred CCHHHHHHHHHHHHHccC---HHHHHHHHHHHHH-hCC-CCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHH
Q 016973 34 NSAELFADRAQASIKLQN---FTEAVADANRAIE-LEP-SMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTN 108 (379)
Q Consensus 34 ~~~~~~~~ra~~~~~lg~---~~eAl~~~~~Al~-l~p-~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~ 108 (379)
-.....+++|.|+.+..+ ..+.+..++..+. -+| ...+..|.+|..++++|+|+.|+.+...+++..|+|.++..
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 345678899999988754 5778889988886 445 35678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 016973 109 LIKECEERIAEE 120 (379)
Q Consensus 109 ~l~~~~~~l~~~ 120 (379)
....++.++...
T Consensus 110 Lk~~ied~itke 121 (149)
T KOG3364|consen 110 LKETIEDKITKE 121 (149)
T ss_pred HHHHHHHHHhhc
Confidence 888888887765
No 229
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.25 E-value=0.0028 Score=58.54 Aligned_cols=75 Identities=17% Similarity=0.173 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK 76 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~---~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~l 76 (379)
++++|..|.++|.+|+|.+|...|-.++...|.+ +++++.+|.|...+|+.++|...|..++..-|....+-.-.
T Consensus 178 ~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak 255 (262)
T COG1729 178 PNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAK 255 (262)
T ss_pred chhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 4688999999999999999999999999997776 79999999999999999999999999999999887665543
No 230
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.23 E-value=0.0048 Score=58.33 Aligned_cols=101 Identities=14% Similarity=0.085 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIK-LQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~-lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~ 82 (379)
.|+...+.+.+.+..+.|...|.+|+.....+..+|...|...++ .++...|...|+.+++..|.+...|+.....+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 456667777778889999999999997666678889999999777 4666669999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhcCCCCh
Q 016973 83 LEEYETAKVALEKGASLAPGDS 104 (379)
Q Consensus 83 lg~y~~A~~~~~~a~~l~p~~~ 104 (379)
+++.+.|...|++++..-+...
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~ 104 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEK 104 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHH
T ss_pred hCcHHHHHHHHHHHHHhcCchh
Confidence 9999999999999999877766
No 231
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.23 E-value=0.00018 Score=69.40 Aligned_cols=96 Identities=14% Similarity=0.170 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC----C--CHH
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEP----S--MSK 71 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p----~--~~~ 71 (379)
++-+.|+.||-.|+|+.||..-+.-|.+.-.. -.++.++|.||+-+|+|+.|+++|.+++.+.- . -+.
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 34456667777777777777655555542211 23566677777777777777777766654432 1 234
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 016973 72 AYWRKATACMKLEEYETAKVALEKGASL 99 (379)
Q Consensus 72 a~~~la~~~~~lg~y~~A~~~~~~a~~l 99 (379)
..|.+|..|.-+.+|..|+.++.+-+.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaI 304 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAI 304 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666666655544
No 232
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.22 E-value=0.0085 Score=51.46 Aligned_cols=93 Identities=27% Similarity=0.370 Sum_probs=77.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCH
Q 016973 11 EAFIDDYFELAYDLYSQAIEISP---NSAELFADRAQASIKLQNFTEAVADANRAIELEPS-MSKAYWRKATACMKLEEY 86 (379)
Q Consensus 11 ~~~~~g~y~~Al~~y~~al~~~p---~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~-~~~a~~~la~~~~~lg~y 86 (379)
.++..|+++.|+..|.+++..++ .....+..++..+...++++.|+..+.+++...+. ...++..++.++...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 78888899999999988888776 34566677777778888899999999998888888 688888888888888888
Q ss_pred HHHHHHHHHHHhcCCCC
Q 016973 87 ETAKVALEKGASLAPGD 103 (379)
Q Consensus 87 ~~A~~~~~~a~~l~p~~ 103 (379)
..|+..+..++...|..
T Consensus 219 ~~a~~~~~~~~~~~~~~ 235 (291)
T COG0457 219 EEALEYYEKALELDPDN 235 (291)
T ss_pred HHHHHHHHHHHhhCccc
Confidence 99999888888888873
No 233
>PRK10941 hypothetical protein; Provisional
Probab=97.17 E-value=0.0042 Score=58.17 Aligned_cols=76 Identities=17% Similarity=0.144 Sum_probs=68.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 016973 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (379)
Q Consensus 5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~ 80 (379)
+.+.-..+.+.++|+.|+.+.+..|.++|+++.-+.-||.+|.++|.+..|+.|++..++.+|+.+.+-.-+.++.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 4456678999999999999999999999999999999999999999999999999999999999988877665543
No 234
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.16 E-value=0.001 Score=65.65 Aligned_cols=111 Identities=13% Similarity=0.075 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-C------
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQA-IEISPN--------SAELFADRAQASIKLQNFTEAVADANRAIEL-E------ 66 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~a-l~~~p~--------~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l-~------ 66 (379)
..++-+++.+|.+|+|..|.+++... +...+. ...++.++|.++++++.|.-+...|.+|++. +
T Consensus 241 ~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g 320 (696)
T KOG2471|consen 241 MALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNG 320 (696)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 35677889999999999999987542 111221 2456789999999999999999999999961 1
Q ss_pred --C---------CCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 016973 67 --P---------SMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (379)
Q Consensus 67 --p---------~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~ 113 (379)
| ...+.+|++|+.|.+.|+.-.|.++|.++......++.+|..++.|
T Consensus 321 ~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEc 378 (696)
T KOG2471|consen 321 LKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAEC 378 (696)
T ss_pred CCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 1 3578999999999999999999999999999999999877666554
No 235
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.10 E-value=0.0017 Score=62.98 Aligned_cols=96 Identities=17% Similarity=0.167 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CCHH
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEI----SPNS--AELFADRAQASIKLQNFTEAVADANRAIELEP------SMSK 71 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~----~p~~--~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p------~~~~ 71 (379)
+.-+.|+++.-.|+|+.|+++|.+.+.+ .... +...|.+|.+|.-++.|+.||.+..+-+.+.. .-..
T Consensus 237 A~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~R 316 (639)
T KOG1130|consen 237 AHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELR 316 (639)
T ss_pred hhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 4567899999999999999999887766 2222 34567899999999999999999988777653 3467
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 016973 72 AYWRKATACMKLEEYETAKVALEKGASL 99 (379)
Q Consensus 72 a~~~la~~~~~lg~y~~A~~~~~~a~~l 99 (379)
+++.+|.++..+|..++|+.+.+..+++
T Consensus 317 acwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 317 ACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999998888776
No 236
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.04 E-value=0.0053 Score=62.43 Aligned_cols=96 Identities=18% Similarity=0.136 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la 77 (379)
.+.+.|..+|+..+|..+++.|...+...|.+ .-...+++.||.++.+++.|++.+..|-+.+|+++-..+.+.
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 46788999999999999999999999997776 445678999999999999999999999999999999999999
Q ss_pred HHHHhccCHHHHHHHHHHHHhc
Q 016973 78 TACMKLEEYETAKVALEKGASL 99 (379)
Q Consensus 78 ~~~~~lg~y~~A~~~~~~a~~l 99 (379)
.+...-+.-++|+.+.......
T Consensus 436 ~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHhcchHHHHHHHHHHHhh
Confidence 9999999999999988776554
No 237
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.99 E-value=0.021 Score=49.97 Aligned_cols=117 Identities=19% Similarity=0.125 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPN--SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~--~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~ 80 (379)
..+...++..|..+++..|...++...+.+|. .++-.+.+|.+|-.+|++.+|...|+-++...| .+.+..+.+..+
T Consensus 125 a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~L 203 (251)
T COG4700 125 AMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEML 203 (251)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 35778899999999999999999999999875 356667778888899999999999999999887 568888899999
Q ss_pred HhccCHHHHHHHHHHHH----hcCCCC-hHHHHHHHHHHHHHHhh
Q 016973 81 MKLEEYETAKVALEKGA----SLAPGD-SRFTNLIKECEERIAEE 120 (379)
Q Consensus 81 ~~lg~y~~A~~~~~~a~----~l~p~~-~~~~~~l~~~~~~l~~~ 120 (379)
..+|+.++|.+.+.... +-.|.- .....|+.....++++.
T Consensus 204 a~qgr~~ea~aq~~~v~d~~~r~~~H~rkh~reW~~~A~~~~~qs 248 (251)
T COG4700 204 AKQGRLREANAQYVAVVDTAKRSRPHYRKHHREWIKTANERLKQS 248 (251)
T ss_pred HHhcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhh
Confidence 99999988877665543 333432 24667888887777664
No 238
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.98 E-value=0.004 Score=62.74 Aligned_cols=104 Identities=14% Similarity=0.080 Sum_probs=93.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHH
Q 016973 12 AFIDDYFELAYDLYSQAIEISPNSA-ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAK 90 (379)
Q Consensus 12 ~~~~g~y~~Al~~y~~al~~~p~~~-~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~ 90 (379)
.-..|+...|+.++..|+...|... ..+.++|.++++.|-...|-..+..++.+...-+..+|.+|.++..+.+.+.|+
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 3457888999999999999988653 457899999999999999999999999999888999999999999999999999
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHH
Q 016973 91 VALEKGASLAPGDSRFTNLIKECEE 115 (379)
Q Consensus 91 ~~~~~a~~l~p~~~~~~~~l~~~~~ 115 (379)
+.|+.|+.++|+++....-+.++.-
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999999988877766544
No 239
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.97 E-value=0.0039 Score=51.37 Aligned_cols=65 Identities=25% Similarity=0.192 Sum_probs=60.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC
Q 016973 39 FADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD 103 (379)
Q Consensus 39 ~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~ 103 (379)
+-..|.++...|+++.|++.|.+++.+.|..+.+|.++++++.-.|+-++|+..+.+++++....
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~ 110 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ 110 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence 45678888889999999999999999999999999999999999999999999999999997654
No 240
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.94 E-value=0.0016 Score=40.20 Aligned_cols=31 Identities=26% Similarity=0.444 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 016973 37 ELFADRAQASIKLQNFTEAVADANRAIELEP 67 (379)
Q Consensus 37 ~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p 67 (379)
.+|+.+|.+|..+|++++|+..|.++++++|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3456666666666666666666666666665
No 241
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.94 E-value=0.012 Score=54.10 Aligned_cols=117 Identities=12% Similarity=0.096 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCC--CCHHHHHHH
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEIS-PNSAELFADRAQASIKLQNFTEAVADANRAIE----LEP--SMSKAYWRK 76 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~-p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~----l~p--~~~~a~~~l 76 (379)
.++...+++...|+|.-.+.+|.+++..+ |..+.+...+|...++.|+.+.|...|++.-+ ++. ....++.+.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 35667788999999999999999999998 66788889999999999999999999985443 332 345567777
Q ss_pred HHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973 77 ATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (379)
Q Consensus 77 a~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (379)
+.+|.-.++|..|...|.+++..||.++.+....+.|..-++..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l 302 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKL 302 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHH
Confidence 88888888999999999999999999888777777776666554
No 242
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.92 E-value=0.0068 Score=55.69 Aligned_cols=99 Identities=15% Similarity=0.119 Sum_probs=85.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 016973 6 EKKAKEAFIDDYFELAYDLYSQAIEI------SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA 79 (379)
Q Consensus 6 ~~~g~~~~~~g~y~~Al~~y~~al~~------~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~ 79 (379)
-..|...++.||...|-.+|+++=.. -..+.....+.+.+|...++|.+|...+.+++..++.++.+..+.|.|
T Consensus 216 s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALc 295 (366)
T KOG2796|consen 216 SGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALC 295 (366)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHH
Confidence 45688999999999999999844332 223455677788888888999999999999999999999999999999
Q ss_pred HHhccCHHHHHHHHHHHHhcCCCCh
Q 016973 80 CMKLEEYETAKVALEKGASLAPGDS 104 (379)
Q Consensus 80 ~~~lg~y~~A~~~~~~a~~l~p~~~ 104 (379)
+..+|+..+|+..++.++...|...
T Consensus 296 llYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 296 LLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccc
Confidence 9999999999999999999999754
No 243
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.91 E-value=0.0016 Score=39.81 Aligned_cols=31 Identities=26% Similarity=0.339 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC
Q 016973 72 AYWRKATACMKLEEYETAKVALEKGASLAPG 102 (379)
Q Consensus 72 a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~ 102 (379)
++|++|.+++.+|++++|+..|++++...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 5666677777777777777777766666665
No 244
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.91 E-value=0.0031 Score=59.02 Aligned_cols=75 Identities=21% Similarity=0.241 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT 78 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~ 78 (379)
.....|....+.|+.+.|..+|..||.+.|.+++++...|......++.-+|-++|-+|+.+.|.+.+++.+++.
T Consensus 118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 118 LALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 345667778888999999999999999999999999999988888888889999999999999988888877664
No 245
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.90 E-value=0.079 Score=45.40 Aligned_cols=106 Identities=16% Similarity=0.019 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l 83 (379)
.|+.........++.+++..++...-.+.|+.+++-..-|..++..|++.+|+..++.+..-.|..+-+--.++.|++.+
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence 56778888999999999999999999999999999999999999999999999999999999999998888899999999
Q ss_pred cCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 016973 84 EEYETAKVALEKGASLAPGDSRFTNLIK 111 (379)
Q Consensus 84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~ 111 (379)
|+..-=..+ ..+++..+ ++.......
T Consensus 92 ~D~~Wr~~A-~evle~~~-d~~a~~Lv~ 117 (160)
T PF09613_consen 92 GDPSWRRYA-DEVLESGA-DPDARALVR 117 (160)
T ss_pred CChHHHHHH-HHHHhcCC-ChHHHHHHH
Confidence 997643322 23444444 444433333
No 246
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.008 Score=54.68 Aligned_cols=72 Identities=22% Similarity=0.278 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR 75 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~ 75 (379)
-+.+.+.+++..|+|-++++....+|..+|.|.-+|+.||.++...-+.++|..||.++++++|....+--|
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsr 303 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSR 303 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHH
Confidence 356788999999999999999999999999999999999999999999999999999999999976655544
No 247
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.87 E-value=0.015 Score=57.54 Aligned_cols=101 Identities=15% Similarity=0.176 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l 83 (379)
.++.-|.--..+++++.|...|.+||..+..+..+|+..+.+-++.+....|...+++|+.+-|.--+.||..-.+-..+
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~L 154 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEML 154 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 34555666677899999999999999999999999999999999999999999999999999999999999999888999
Q ss_pred cCHHHHHHHHHHHHhcCCCCh
Q 016973 84 EEYETAKVALEKGASLAPGDS 104 (379)
Q Consensus 84 g~y~~A~~~~~~a~~l~p~~~ 104 (379)
|+..-|...|++-+...|+..
T Consensus 155 gNi~gaRqiferW~~w~P~eq 175 (677)
T KOG1915|consen 155 GNIAGARQIFERWMEWEPDEQ 175 (677)
T ss_pred cccHHHHHHHHHHHcCCCcHH
Confidence 999999999999999888743
No 248
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.82 E-value=0.059 Score=49.52 Aligned_cols=117 Identities=16% Similarity=0.103 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHc--------cCHHHHHHHHHHHHHhCCCC--
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKL--------QNFTEAVADANRAIELEPSM-- 69 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~---~~~~~~ra~~~~~l--------g~~~eAl~~~~~Al~l~p~~-- 69 (379)
..++..+.++++.++|++|+...++-+.+.|++ ..+++-+|.+++.. .-..+|+..+...+..-|+.
T Consensus 72 qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Y 151 (254)
T COG4105 72 QAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRY 151 (254)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcc
Confidence 357788999999999999999999999998887 45778888887765 22467889999999998863
Q ss_pred ---HH----------HH--HHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973 70 ---SK----------AY--WRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (379)
Q Consensus 70 ---~~----------a~--~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~ 119 (379)
+. +. +..|..|.+.|.|-.|+.-++..++-.|+.......+..+.+....
T Consensus 152 a~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~ 216 (254)
T COG4105 152 APDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYA 216 (254)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHH
Confidence 11 11 3357788899999999999999999988877666666555554433
No 249
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.80 E-value=0.0077 Score=61.13 Aligned_cols=87 Identities=23% Similarity=0.188 Sum_probs=56.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHhccCHHHHH
Q 016973 15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS----MSKAYWRKATACMKLEEYETAK 90 (379)
Q Consensus 15 ~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~----~~~a~~~la~~~~~lg~y~~A~ 90 (379)
..+...|.+++...+...|+...+++..|..+...|+.++|++.+++++..... ..-++|.+|.++..+.+|++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 445566666777777777777777777777777777777777777766643222 2345666677777777777777
Q ss_pred HHHHHHHhcCC
Q 016973 91 VALEKGASLAP 101 (379)
Q Consensus 91 ~~~~~a~~l~p 101 (379)
.+|.+..+.+.
T Consensus 326 ~~f~~L~~~s~ 336 (468)
T PF10300_consen 326 EYFLRLLKESK 336 (468)
T ss_pred HHHHHHHhccc
Confidence 77666666544
No 250
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.78 E-value=0.011 Score=49.79 Aligned_cols=62 Identities=21% Similarity=0.177 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL 65 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l 65 (379)
.+...+..+...|+++.|+..+.+++..+|.+..++..+-.+|..+|++.+|+..|.++...
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 45566778889999999999999999999999999999999999999999999999887543
No 251
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.75 E-value=0.025 Score=53.37 Aligned_cols=109 Identities=17% Similarity=0.190 Sum_probs=87.5
Q ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHH
Q 016973 4 DLEKKAKEAFI-DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS---KAYWRKATA 79 (379)
Q Consensus 4 ~l~~~g~~~~~-~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~---~a~~~la~~ 79 (379)
.|...|..-+. .++...|..+|+.++...|.+..++......++.+++.+.|...|++++..-+... ..|-+....
T Consensus 37 vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~f 116 (280)
T PF05843_consen 37 VYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEF 116 (280)
T ss_dssp HHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 35556666556 67778899999999999999999999999999999999999999999998876543 577777777
Q ss_pred HHhccCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 016973 80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIKE 112 (379)
Q Consensus 80 ~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~ 112 (379)
-...|+.+......+++.++.|.+..+.....+
T Consensus 117 E~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~~r 149 (280)
T PF05843_consen 117 ESKYGDLESVRKVEKRAEELFPEDNSLELFSDR 149 (280)
T ss_dssp HHHHS-HHHHHHHHHHHHHHTTTS-HHHHHHCC
T ss_pred HHHcCCHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 789999999999999999999987766554443
No 252
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.73 E-value=0.0075 Score=41.77 Aligned_cols=43 Identities=21% Similarity=0.185 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 016973 37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA 79 (379)
Q Consensus 37 ~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~ 79 (379)
+.++.+|..++++|+|.+|++.++.++++.|++..+.-....+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 4577888889999999999999999999999888776655443
No 253
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.73 E-value=0.031 Score=51.56 Aligned_cols=79 Identities=20% Similarity=0.171 Sum_probs=53.7
Q ss_pred HHHHHHHHHc----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 016973 40 ADRAQASIKL----QNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEE 115 (379)
Q Consensus 40 ~~ra~~~~~l----g~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 115 (379)
..+|.++.++ +++.+|.-.|+..-.-.+..+..+..++.|+..+|+|++|...++.++.-++++++....+--+-.
T Consensus 173 tQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~ 252 (299)
T KOG3081|consen 173 TQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLAL 252 (299)
T ss_pred HHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 3344444443 345555555555444344466777778999999999999999999999999999887665555544
Q ss_pred HHH
Q 016973 116 RIA 118 (379)
Q Consensus 116 ~l~ 118 (379)
.++
T Consensus 253 ~~G 255 (299)
T KOG3081|consen 253 HLG 255 (299)
T ss_pred HhC
Confidence 433
No 254
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.71 E-value=0.014 Score=59.21 Aligned_cols=92 Identities=17% Similarity=0.114 Sum_probs=72.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Q 016973 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPN----SAELFADRAQASIKLQNFTEAVADANRAIELEP-SMSKAYWRKATA 79 (379)
Q Consensus 5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~----~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p-~~~~a~~~la~~ 79 (379)
++..|..+...|+.++|++.|++++..... ...+++.+|.|+.-+++|++|..++.+.++.+. ..+-..|..|.|
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 567899999999999999999999853222 246788899999999999999999999998754 234555667888
Q ss_pred HHhccCHHHHHHHHHHH
Q 016973 80 CMKLEEYETAKVALEKG 96 (379)
Q Consensus 80 ~~~lg~y~~A~~~~~~a 96 (379)
+..+|+...+...-+++
T Consensus 350 ~~~l~~~~~~~~~~~~a 366 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEA 366 (468)
T ss_pred HHhhccchhhhhhHHHH
Confidence 89998885555444444
No 255
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.71 E-value=0.015 Score=56.25 Aligned_cols=111 Identities=13% Similarity=0.105 Sum_probs=88.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccC
Q 016973 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE 85 (379)
Q Consensus 6 ~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~ 85 (379)
...+..+.+.|++++|.+...++|...-+.- ++.+.-+ .+.++...=++.+++.+..+|+++..++.+|..|+..+.
T Consensus 267 ~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~-l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~ 343 (400)
T COG3071 267 VAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPR-LRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKL 343 (400)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhh-cCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhH
Confidence 3456778899999999999999999854432 2333222 366888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973 86 YETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (379)
Q Consensus 86 y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (379)
|.+|..+|+.++...|+... ..+++.+..+++..
T Consensus 344 w~kA~~~leaAl~~~~s~~~-~~~la~~~~~~g~~ 377 (400)
T COG3071 344 WGKASEALEAALKLRPSASD-YAELADALDQLGEP 377 (400)
T ss_pred HHHHHHHHHHHHhcCCChhh-HHHHHHHHHHcCCh
Confidence 99999999999999997654 45666665555543
No 256
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.66 E-value=0.0031 Score=37.02 Aligned_cols=32 Identities=31% Similarity=0.473 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC
Q 016973 71 KAYWRKATACMKLEEYETAKVALEKGASLAPG 102 (379)
Q Consensus 71 ~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~ 102 (379)
.+++++|.+++.+|+++.|..+|+++++++|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35666667777777777777766666666554
No 257
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.65 E-value=0.0072 Score=56.65 Aligned_cols=75 Identities=19% Similarity=0.115 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 016973 38 LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE 112 (379)
Q Consensus 38 ~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~ 112 (379)
+-.+.|.-..+.|+.++|...|..|+.++|++++++.++|+.....++.-+|-.+|-+|+.+.|.+.++....++
T Consensus 118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 118 LALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 334455556778999999999999999999999999999999999999999999999999999999886655444
No 258
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.65 E-value=0.0053 Score=58.70 Aligned_cols=97 Identities=18% Similarity=0.148 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---------
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPS--------- 68 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~--------- 68 (379)
.....|+++...+.|+.+++.|+.|+.+..++ ...+..+|..+-++.++++|+-+..+|..+-..
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 34567899999999999999999999985444 345788999999999999999999999988542
Q ss_pred -CHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q 016973 69 -MSKAYWRKATACMKLEEYETAKVALEKGASLA 100 (379)
Q Consensus 69 -~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~ 100 (379)
...++|+++++|..+|+.-+|.++++++.++.
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 24578999999999999999999999998763
No 259
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.64 E-value=0.0083 Score=62.53 Aligned_cols=115 Identities=22% Similarity=0.353 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKL--QNFTEAVADANRAIELEPSMSKAYWRK 76 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~----~~~~~~ra~~~~~l--g~~~eAl~~~~~Al~l~p~~~~a~~~l 76 (379)
..+...|+.+|..++|.+|.--|..++.+-|.+ ...+.+++.||.++ ++|..++..+..|+...|.+..+++++
T Consensus 54 ~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r 133 (748)
T KOG4151|consen 54 LELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKR 133 (748)
T ss_pred HHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhh
Confidence 456788999999999999998999999987743 55677888888776 789999999999999999999999999
Q ss_pred HHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 016973 77 ATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (379)
Q Consensus 77 a~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l 117 (379)
+.+|..+++++-|+..+......+|.+..+..-..+++..+
T Consensus 134 ~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll 174 (748)
T KOG4151|consen 134 ARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL 174 (748)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence 99999999999999999888999999977666566666665
No 260
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.57 E-value=0.003 Score=62.42 Aligned_cols=77 Identities=12% Similarity=0.114 Sum_probs=68.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 016973 6 EKKAKEAFIDDYFELAYDLYSQAIEI------------------SPNSAELFADRAQASIKLQNFTEAVADANRAIELEP 67 (379)
Q Consensus 6 ~~~g~~~~~~g~y~~Al~~y~~al~~------------------~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p 67 (379)
.+.|.++|+.|.|+.++.+|.+||+- .....+++|+.|..|.+.|+.-.|.++|.++++...
T Consensus 287 NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh 366 (696)
T KOG2471|consen 287 NNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH 366 (696)
T ss_pred cCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 46788999999999999999999961 123478899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHh
Q 016973 68 SMSKAYWRKATACMK 82 (379)
Q Consensus 68 ~~~~a~~~la~~~~~ 82 (379)
.++..|+|+|.|+..
T Consensus 367 ~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 367 RNPRLWLRLAECCIM 381 (696)
T ss_pred cCcHHHHHHHHHHHH
Confidence 999999999999864
No 261
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.017 Score=54.68 Aligned_cols=66 Identities=18% Similarity=0.302 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP 67 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p 67 (379)
|--+.++|-+.+.-|+|..||..+.+++.++|.+.-++++-|.|++.++++.+|++.++..++++-
T Consensus 119 avLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 119 AVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 445788999999999999999999999999999999999999999999999999999999877764
No 262
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=96.56 E-value=0.012 Score=44.62 Aligned_cols=72 Identities=8% Similarity=0.122 Sum_probs=59.6
Q ss_pred cccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcC--CC---ceeeeccccccccccCcceEEE-eCcEEEEEEee
Q 016973 184 YQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP--GE---EAYHFQPRLFGKIIPAKCRYEV-LSTKVEIRLAK 255 (379)
Q Consensus 184 ~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~--~~---~~~~~~~~L~~~I~p~~s~~~v-~~~kiei~L~K 255 (379)
+.+++.+.|.+.++|+.+++|+|++..+.|+|+.... .+ ..|.-.+.|-..|+++..+-++ ....+.|++.+
T Consensus 4 ~e~~~~~~v~~dlpG~~pedi~V~v~~~~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~~~~ 81 (81)
T cd06479 4 KTLGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKARR 81 (81)
T ss_pred cCcCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEEecC
Confidence 4678899999999999999999999999999986421 22 2466778999999999999997 67788888763
No 263
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=96.54 E-value=0.012 Score=45.16 Aligned_cols=73 Identities=8% Similarity=0.099 Sum_probs=60.0
Q ss_pred ccccccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcCC----C----ceeeeccccccccccCcceEEEe-CcEEEE
Q 016973 181 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG----E----EAYHFQPRLFGKIIPAKCRYEVL-STKVEI 251 (379)
Q Consensus 181 ~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~----~----~~~~~~~~L~~~I~p~~s~~~v~-~~kiei 251 (379)
-+++.+++.+.|.+.++|+.+++++|++.++.|.|+..... + ..|.-.+.|-..|++++.+-... +.-+.|
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~I 82 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILTV 82 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEEECCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeEEE
Confidence 46889999999999999999999999999999999875321 1 13666778999999999998887 766777
Q ss_pred EE
Q 016973 252 RL 253 (379)
Q Consensus 252 ~L 253 (379)
+|
T Consensus 83 ~l 84 (86)
T cd06475 83 EA 84 (86)
T ss_pred Ee
Confidence 65
No 264
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=96.48 E-value=0.013 Score=44.98 Aligned_cols=72 Identities=10% Similarity=0.119 Sum_probs=59.4
Q ss_pred cccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcC----CC----ceeeeccccccccccCcceEEE-eCcEEEEEEe
Q 016973 184 YQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP----GE----EAYHFQPRLFGKIIPAKCRYEV-LSTKVEIRLA 254 (379)
Q Consensus 184 ~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~----~~----~~~~~~~~L~~~I~p~~s~~~v-~~~kiei~L~ 254 (379)
+.+++.+.|.+.++|+.++++.|++..+.|+|+.... ++ ..|.-.+.|-..|++++.+-++ ....+.|+|.
T Consensus 6 ~e~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~P 85 (86)
T cd06497 6 RSDRDKFTIYLDVKHFSPEDLTVKVLDDYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTFSGP 85 (86)
T ss_pred EEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCCCEEEEEec
Confidence 4788999999999999999999999999999987431 11 1255577899999999999998 5778899887
Q ss_pred e
Q 016973 255 K 255 (379)
Q Consensus 255 K 255 (379)
|
T Consensus 86 K 86 (86)
T cd06497 86 K 86 (86)
T ss_pred C
Confidence 6
No 265
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.46 E-value=0.0058 Score=37.19 Aligned_cols=31 Identities=26% Similarity=0.303 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 016973 38 LFADRAQASIKLQNFTEAVADANRAIELEPS 68 (379)
Q Consensus 38 ~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~ 68 (379)
+++++|.|+.++|++++|+..|++++...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3445555555555555555555555554443
No 266
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.43 E-value=0.0051 Score=60.82 Aligned_cols=78 Identities=21% Similarity=0.253 Sum_probs=71.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 016973 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (379)
Q Consensus 6 ~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l 83 (379)
-+++.++++.++|..|+..+.+||+.+|...-+|++||.+...++.|.+|+.+|+....+.|+.+.+...+..|-+..
T Consensus 42 anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~v 119 (476)
T KOG0376|consen 42 ANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIV 119 (476)
T ss_pred chhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHH
Confidence 356788999999999999999999999999999999999999999999999999999999999998888777776554
No 267
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.42 E-value=0.046 Score=54.51 Aligned_cols=91 Identities=13% Similarity=0.131 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccC-HHHHHHHHHHHHh
Q 016973 20 LAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE-YETAKVALEKGAS 98 (379)
Q Consensus 20 ~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~-y~~A~~~~~~a~~ 98 (379)
.=..+|..|+...+.+..+|.....-..+.+.+.+-...|..++..+|+++..|...|.-.|..+. .+.|.+.|.++++
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 345679999999999999999888777777889999999999999999999999999999988887 9999999999999
Q ss_pred cCCCChHHHHHH
Q 016973 99 LAPGDSRFTNLI 110 (379)
Q Consensus 99 l~p~~~~~~~~l 110 (379)
++|+.+.++...
T Consensus 169 ~npdsp~Lw~ey 180 (568)
T KOG2396|consen 169 FNPDSPKLWKEY 180 (568)
T ss_pred cCCCChHHHHHH
Confidence 999999865443
No 268
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=96.42 E-value=0.012 Score=44.71 Aligned_cols=68 Identities=19% Similarity=0.194 Sum_probs=57.0
Q ss_pred CeEEEEEEeCCCCCCceEEEEeecEEEEEEEcCCC--------ceeeeccccccccccCcceEEEeC-cEEEEEEee
Q 016973 188 EEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGE--------EAYHFQPRLFGKIIPAKCRYEVLS-TKVEIRLAK 255 (379)
Q Consensus 188 ~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~--------~~~~~~~~L~~~I~p~~s~~~v~~-~kiei~L~K 255 (379)
+.+.|.+.++|+.+++|+|.+..+.|.|+...... ..|.-.+.|-..|+++..+.++.. .-+.|++.|
T Consensus 7 ~~~~v~~dlpG~~~edI~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~Pk 83 (83)
T cd06526 7 EKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAPK 83 (83)
T ss_pred eeEEEEEECCCCCHHHcEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEEecC
Confidence 57889999999999999999999999998753211 247778899999999999999988 788888865
No 269
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.40 E-value=0.0057 Score=38.61 Aligned_cols=28 Identities=21% Similarity=0.160 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 016973 72 AYWRKATACMKLEEYETAKVALEKGASL 99 (379)
Q Consensus 72 a~~~la~~~~~lg~y~~A~~~~~~a~~l 99 (379)
++.++|.+|..+|+|++|+.+|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5778899999999999999999986654
No 270
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.39 E-value=0.037 Score=60.63 Aligned_cols=94 Identities=15% Similarity=0.012 Sum_probs=78.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHH
Q 016973 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNS-----AELFADRAQASIKLQNFTEAVADANRAIELEPS------MSKAYW 74 (379)
Q Consensus 6 ~~~g~~~~~~g~y~~Al~~y~~al~~~p~~-----~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~------~~~a~~ 74 (379)
...|..++..|++++|...+.+++...+.. ..++..+|.++...|++++|+..+.+++.+... ...++.
T Consensus 456 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~ 535 (903)
T PRK04841 456 ALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLL 535 (903)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHH
Confidence 346788899999999999999999864443 245677899999999999999999999977432 134667
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHhc
Q 016973 75 RKATACMKLEEYETAKVALEKGASL 99 (379)
Q Consensus 75 ~la~~~~~lg~y~~A~~~~~~a~~l 99 (379)
.+|.+++..|+++.|...+++++.+
T Consensus 536 ~la~~~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 536 QQSEILFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 8899999999999999999999886
No 271
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.33 E-value=0.035 Score=58.68 Aligned_cols=100 Identities=17% Similarity=0.038 Sum_probs=86.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Q 016973 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (379)
Q Consensus 5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg 84 (379)
..-.|..+++.|.+++|+.+++..-..-+++-..+-.+-.||..++++++|..+|++++.-+|. -+-++.+-.+|.+-+
T Consensus 46 ~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~ 124 (932)
T KOG2053|consen 46 KVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREK 124 (932)
T ss_pred HHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHH
Confidence 3457889999999999999988887788888888999999999999999999999999999998 899999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCChH
Q 016973 85 EYETAKVALEKGASLAPGDSR 105 (379)
Q Consensus 85 ~y~~A~~~~~~a~~l~p~~~~ 105 (379)
.|.+-..+--+..+..|+++-
T Consensus 125 ~yk~qQkaa~~LyK~~pk~~y 145 (932)
T KOG2053|consen 125 SYKKQQKAALQLYKNFPKRAY 145 (932)
T ss_pred HHHHHHHHHHHHHHhCCcccc
Confidence 998766555555566676653
No 272
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.31 E-value=0.033 Score=61.07 Aligned_cols=97 Identities=9% Similarity=0.041 Sum_probs=78.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------CH
Q 016973 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPS--------MS 70 (379)
Q Consensus 5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~--------~~ 70 (379)
+...|..+...|++++|+..|.+++...... ...+.++|.+++..|++++|...+.+++.+... ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 4567888899999999999999999763321 346678899999999999999999999987321 22
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 016973 71 KAYWRKATACMKLEEYETAKVALEKGASLAP 101 (379)
Q Consensus 71 ~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p 101 (379)
..+..+|.+++..|++++|...+.+++.+..
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~ 604 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLS 604 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence 3456789999999999999999999988643
No 273
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.30 E-value=0.052 Score=57.94 Aligned_cols=91 Identities=13% Similarity=0.074 Sum_probs=65.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCH
Q 016973 7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY 86 (379)
Q Consensus 7 ~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y 86 (379)
.....+.+.|++++|++++++. ...| +...|..+..++...|+++.|...+++++.+.|.+...|..++.+|...|++
T Consensus 467 ~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~ 544 (697)
T PLN03081 467 CMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQ 544 (697)
T ss_pred hHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCH
Confidence 3455666777777777776653 1223 3455666767777788888888888888888888777888888888888888
Q ss_pred HHHHHHHHHHHhc
Q 016973 87 ETAKVALEKGASL 99 (379)
Q Consensus 87 ~~A~~~~~~a~~l 99 (379)
++|...++...+.
T Consensus 545 ~~A~~v~~~m~~~ 557 (697)
T PLN03081 545 AEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHHHc
Confidence 8888888766544
No 274
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.29 E-value=0.056 Score=48.95 Aligned_cols=93 Identities=18% Similarity=0.063 Sum_probs=69.8
Q ss_pred HHHcCCHHHHHHHHHHHHHh----C-CCC--HHHHHHHHHHHHHccCHH-------HHHHHHHHHHHhCC------CCHH
Q 016973 12 AFIDDYFELAYDLYSQAIEI----S-PNS--AELFADRAQASIKLQNFT-------EAVADANRAIELEP------SMSK 71 (379)
Q Consensus 12 ~~~~g~y~~Al~~y~~al~~----~-p~~--~~~~~~ra~~~~~lg~~~-------eAl~~~~~Al~l~p------~~~~ 71 (379)
+-....+++|+..|..||-. . +.. +.+++++|-+|..+|+-+ .|+..|.+|+.... +...
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence 33456789999999888876 2 122 567888899998888844 46666666665542 2367
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCh
Q 016973 72 AYWRKATACMKLEEYETAKVALEKGASLAPGDS 104 (379)
Q Consensus 72 a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~ 104 (379)
.+|.+|.+++++|++++|+.+|.+++.....+.
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 899999999999999999999999998765444
No 275
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.26 E-value=0.072 Score=49.17 Aligned_cols=94 Identities=13% Similarity=0.151 Sum_probs=80.8
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHH-H
Q 016973 14 IDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKV-A 92 (379)
Q Consensus 14 ~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~-~ 92 (379)
..+.+++|.-+|++.-...+..+..+...|.|++.+++|++|...+..|+.-++.+++.+.++-.+-..+|.-.++.. .
T Consensus 185 ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 356689999999998886777789999999999999999999999999999999999999999999999998877665 5
Q ss_pred HHHHHhcCCCChHHH
Q 016973 93 LEKGASLAPGDSRFT 107 (379)
Q Consensus 93 ~~~a~~l~p~~~~~~ 107 (379)
+.+....+|+++-..
T Consensus 265 l~QLk~~~p~h~~vk 279 (299)
T KOG3081|consen 265 LSQLKLSHPEHPFVK 279 (299)
T ss_pred HHHHHhcCCcchHHH
Confidence 566666778776443
No 276
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=96.25 E-value=0.023 Score=43.47 Aligned_cols=72 Identities=8% Similarity=0.101 Sum_probs=58.9
Q ss_pred ccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcCC---Cc-----eeeeccccccccccCcceEEEe-CcEEEEEEee
Q 016973 185 QKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG---EE-----AYHFQPRLFGKIIPAKCRYEVL-STKVEIRLAK 255 (379)
Q Consensus 185 Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~---~~-----~~~~~~~L~~~I~p~~s~~~v~-~~kiei~L~K 255 (379)
-+++.+.|.+.++|+.++++.|++..+.|+|+..... +. .|.-.+.|-..|++++.+-+.. ...+.|+|.|
T Consensus 4 ~~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~lPk 83 (84)
T cd06498 4 LEKDKFSVNLDVKHFSPEELKVKVLGDFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVCGPR 83 (84)
T ss_pred eCCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCCEEEEEEeC
Confidence 3577899999999999999999999999999875321 11 2556778999999999999996 8889999877
Q ss_pred c
Q 016973 256 A 256 (379)
Q Consensus 256 ~ 256 (379)
.
T Consensus 84 ~ 84 (84)
T cd06498 84 K 84 (84)
T ss_pred C
Confidence 3
No 277
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.22 E-value=0.048 Score=54.49 Aligned_cols=54 Identities=17% Similarity=0.155 Sum_probs=27.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHH
Q 016973 8 KAKEAFIDDYFELAYDLYSQAIEISPN--SAELFADRAQASIKLQNFTEAVADANR 61 (379)
Q Consensus 8 ~g~~~~~~g~y~~Al~~y~~al~~~p~--~~~~~~~ra~~~~~lg~~~eAl~~~~~ 61 (379)
.|.++-+.|+..+|++.|...++.+|. +..++.++..|++.++.|.++...+.+
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 444555555555555555555554443 233455555555555555555544444
No 278
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.17 E-value=0.051 Score=42.09 Aligned_cols=49 Identities=12% Similarity=0.161 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 016973 21 AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM 69 (379)
Q Consensus 21 Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~ 69 (379)
.+..+.+.+..+|.+..+.+.+|.++...|++++|+..+-.+++.++.+
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 4566778888888888888888888888888888888888888887755
No 279
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.13 E-value=0.16 Score=56.62 Aligned_cols=89 Identities=11% Similarity=0.027 Sum_probs=46.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCH
Q 016973 9 AKEAFIDDYFELAYDLYSQAIEIS-PNSAELFADRAQASIKLQNFTEAVADANRAIELE-PSMSKAYWRKATACMKLEEY 86 (379)
Q Consensus 9 g~~~~~~g~y~~Al~~y~~al~~~-p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~-p~~~~a~~~la~~~~~lg~y 86 (379)
...+.+.|++++|+++|.+.++.. .-+...|..+..+|.+.|++++|+..|....... ..+...|..+...|.+.|++
T Consensus 656 I~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~ 735 (1060)
T PLN03218 656 VDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQL 735 (1060)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 344455555555555555555442 2234455555555555566666655555554332 11344455555555566666
Q ss_pred HHHHHHHHHHH
Q 016973 87 ETAKVALEKGA 97 (379)
Q Consensus 87 ~~A~~~~~~a~ 97 (379)
++|+..|.+..
T Consensus 736 eeAlelf~eM~ 746 (1060)
T PLN03218 736 PKALEVLSEMK 746 (1060)
T ss_pred HHHHHHHHHHH
Confidence 66666555443
No 280
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.10 E-value=0.0095 Score=34.80 Aligned_cols=31 Identities=29% Similarity=0.506 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 016973 38 LFADRAQASIKLQNFTEAVADANRAIELEPS 68 (379)
Q Consensus 38 ~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~ 68 (379)
+++++|.++..+++++.|+..+.+++.++|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4566666666666666666666666666553
No 281
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.16 Score=46.78 Aligned_cols=109 Identities=10% Similarity=0.013 Sum_probs=95.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHH-HH
Q 016973 12 AFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ-NFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYE-TA 89 (379)
Q Consensus 12 ~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg-~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~-~A 89 (379)
+++...-+.|+.+-..+|.++|.+...|..|-.|+..++ ++.+-++.+...++-+|.+.++|..+-.+...+|++. .-
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rE 132 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRE 132 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccch
Confidence 344566689999999999999999999999999988875 5788899999999999999999999999999999998 88
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973 90 KVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (379)
Q Consensus 90 ~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (379)
+.+.+.++..+..+-.++.....|-...+..
T Consensus 133 Lef~~~~l~~DaKNYHaWshRqW~~r~F~~~ 163 (318)
T KOG0530|consen 133 LEFTKLMLDDDAKNYHAWSHRQWVLRFFKDY 163 (318)
T ss_pred HHHHHHHHhccccchhhhHHHHHHHHHHhhH
Confidence 9999999999998888888888776655554
No 282
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=96.04 E-value=0.048 Score=42.17 Aligned_cols=73 Identities=12% Similarity=0.167 Sum_probs=55.9
Q ss_pred ccccccC-CeEEEEEEeCCCCCCceEEEEeecEEEEEEEcCC--------------CceeeeccccccccccCcceEEEe
Q 016973 181 HEFYQKP-EEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG--------------EEAYHFQPRLFGKIIPAKCRYEVL 245 (379)
Q Consensus 181 ~~W~Qt~-~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~--------------~~~~~~~~~L~~~I~p~~s~~~v~ 245 (379)
++=++++ +...|.+.++|+.++++.|.+..+.|.|+..... -..|.-.+.|-..|+.+ +....
T Consensus 3 ~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A~~~ 80 (90)
T cd06470 3 YNIEKTGENNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GAELE 80 (90)
T ss_pred eeeEEcCCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--eeEEe
Confidence 4556764 8999999999999999999999999999854211 12366677888888876 56777
Q ss_pred CcEEEEEEee
Q 016973 246 STKVEIRLAK 255 (379)
Q Consensus 246 ~~kiei~L~K 255 (379)
+..+.|+|.+
T Consensus 81 ~GvL~I~l~~ 90 (90)
T cd06470 81 NGLLTIDLER 90 (90)
T ss_pred CCEEEEEEEC
Confidence 7888888763
No 283
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.01 E-value=0.065 Score=53.54 Aligned_cols=90 Identities=19% Similarity=0.165 Sum_probs=53.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----------------------
Q 016973 11 EAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS---------------------- 68 (379)
Q Consensus 11 ~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~---------------------- 68 (379)
.+-+..+.+.-+++-.+||+++|+.+.+|..+|.-. .....+|...+.+|++....
T Consensus 177 ~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rd 254 (539)
T PF04184_consen 177 KAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRD 254 (539)
T ss_pred HHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccc
Confidence 445667777777777777777777777766665421 22344444444444433210
Q ss_pred ---CHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC
Q 016973 69 ---MSKAYWRKATACMKLEEYETAKVALEKGASLAPG 102 (379)
Q Consensus 69 ---~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~ 102 (379)
..-+-+|+|.|+.++|+.++|+..|+..++..|.
T Consensus 255 t~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~ 291 (539)
T PF04184_consen 255 TNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPN 291 (539)
T ss_pred cchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCc
Confidence 1234466777777777777777777777766664
No 284
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=96.00 E-value=0.031 Score=42.56 Aligned_cols=71 Identities=14% Similarity=0.142 Sum_probs=57.2
Q ss_pred ccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcC---CC-----ceeeeccccccccccCcceEEEe-CcEEEEEEee
Q 016973 185 QKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GE-----EAYHFQPRLFGKIIPAKCRYEVL-STKVEIRLAK 255 (379)
Q Consensus 185 Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~---~~-----~~~~~~~~L~~~I~p~~s~~~v~-~~kiei~L~K 255 (379)
.+++.+.|.+-++|+.+++|.|++..+.|.|+.... .+ ..|.-.+.|-..|++++.+-++. ..-+.|+|.|
T Consensus 4 ~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dGvL~I~~PK 83 (83)
T cd06478 4 LDKDRFSVNLDVKHFSPEELSVKVLGDFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTISGPR 83 (83)
T ss_pred ecCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCCEEEEEecC
Confidence 467889999999999999999999999999987432 11 12556778999999999888884 7788888765
No 285
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.98 E-value=0.015 Score=36.63 Aligned_cols=28 Identities=11% Similarity=0.202 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 016973 38 LFADRAQASIKLQNFTEAVADANRAIEL 65 (379)
Q Consensus 38 ~~~~ra~~~~~lg~~~eAl~~~~~Al~l 65 (379)
+|.++|.+|.++|+|++|+..|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3667788888888888888888886544
No 286
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.97 E-value=0.13 Score=51.18 Aligned_cols=106 Identities=20% Similarity=0.236 Sum_probs=53.1
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHH
Q 016973 13 FIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYET 88 (379)
Q Consensus 13 ~~~g~y~~Al~~y~~al~~~p~~----~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~ 88 (379)
+...+.+.+.+.|+.+|.+.|+. +-+|+-.|...++..++..|.+.+-.|+..+|.+ +.+-..-.+-.++++++.
T Consensus 377 le~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDR 455 (677)
T KOG1915|consen 377 LEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDR 455 (677)
T ss_pred HHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHH
Confidence 44455555666666666665554 3344444555555555555555555555555532 222222223344555555
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973 89 AKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (379)
Q Consensus 89 A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~ 119 (379)
....|++.++..|.+-..+...+.++..|+.
T Consensus 456 cRkLYEkfle~~Pe~c~~W~kyaElE~~Lgd 486 (677)
T KOG1915|consen 456 CRKLYEKFLEFSPENCYAWSKYAELETSLGD 486 (677)
T ss_pred HHHHHHHHHhcChHhhHHHHHHHHHHHHhhh
Confidence 5555555555555555444444444444444
No 287
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.96 E-value=0.2 Score=55.89 Aligned_cols=88 Identities=10% Similarity=0.092 Sum_probs=39.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcc
Q 016973 10 KEAFIDDYFELAYDLYSQAIEI----SPNSAELFADRAQASIKLQNFTEAVADANRAIELE-PSMSKAYWRKATACMKLE 84 (379)
Q Consensus 10 ~~~~~~g~y~~Al~~y~~al~~----~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~-p~~~~a~~~la~~~~~lg 84 (379)
..+.+.|++++|.++|.+.... .|+ ...|..+..+|.+.|++++|++.|..+.+.+ +.+...|..+..+|.+.|
T Consensus 550 ~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G 628 (1060)
T PLN03218 550 SACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKG 628 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC
Confidence 3444444444555444444331 222 2333444444444555555555554444443 223344444444444455
Q ss_pred CHHHHHHHHHHHHh
Q 016973 85 EYETAKVALEKGAS 98 (379)
Q Consensus 85 ~y~~A~~~~~~a~~ 98 (379)
++++|+..|.+..+
T Consensus 629 ~~deAl~lf~eM~~ 642 (1060)
T PLN03218 629 DWDFALSIYDDMKK 642 (1060)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555554444443
No 288
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.94 E-value=0.011 Score=53.20 Aligned_cols=61 Identities=25% Similarity=0.302 Sum_probs=47.0
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChH
Q 016973 45 ASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR 105 (379)
Q Consensus 45 ~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~ 105 (379)
...+.++.+.|.+.|.+|+.+.|.....|||+|......|+++.|...|++.++++|.+..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 3445577777788888888888888888888888888888888888888888888887654
No 289
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.91 E-value=0.076 Score=57.87 Aligned_cols=111 Identities=16% Similarity=0.148 Sum_probs=89.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHc----c---CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 016973 8 KAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKL----Q---NFTEAVADANRAIELEPSMSKAYWRKA 77 (379)
Q Consensus 8 ~g~~~~~~g~y~~Al~~y~~al~~~p~~---~~~~~~ra~~~~~l----g---~~~eAl~~~~~Al~l~p~~~~a~~~la 77 (379)
-.++++..+.|+.|+..|.+.-...|.. .++.++.|.++... | .|.+|+.-|++. .-.+.-+.-|+..|
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 559 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKA 559 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHH
Confidence 3467888999999999999999998765 67888888887654 2 477777777663 34466778899999
Q ss_pred HHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973 78 TACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (379)
Q Consensus 78 ~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~ 119 (379)
.+|.++|+|++-+.+|.-|++..|+++........+-.+|..
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (932)
T PRK13184 560 LVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHE 601 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence 999999999999999999999999999877666555555444
No 290
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.90 E-value=0.05 Score=58.04 Aligned_cols=102 Identities=16% Similarity=0.063 Sum_probs=50.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-C--------------
Q 016973 5 LEKKAKEAFIDDYFELAYDLYSQAIEI--SPNSAELFADRAQASIKLQNFTEAVADANRAIELE-P-------------- 67 (379)
Q Consensus 5 l~~~g~~~~~~g~y~~Al~~y~~al~~--~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~-p-------------- 67 (379)
|......|.+.|++++|+.+|.+.... .| +...|..+..++.++|++++|.+.+..+++.. +
T Consensus 293 ~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~ 371 (697)
T PLN03081 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSI-DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYS 371 (697)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHH
Confidence 344455556666666666666555443 22 22334444444444444444444444444332 1
Q ss_pred -----------------CCHHHHHHHHHHHHhccCHHHHHHHHHHHHh--cCCCChHHH
Q 016973 68 -----------------SMSKAYWRKATACMKLEEYETAKVALEKGAS--LAPGDSRFT 107 (379)
Q Consensus 68 -----------------~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~--l~p~~~~~~ 107 (379)
.+...|..+...|.+.|+.++|+..|++..+ +.|+...+.
T Consensus 372 k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~ 430 (697)
T PLN03081 372 KWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFL 430 (697)
T ss_pred HCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 2334455556666666666666666666544 234444333
No 291
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.77 E-value=0.12 Score=49.22 Aligned_cols=101 Identities=11% Similarity=-0.015 Sum_probs=80.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCHHHHHH---HHHHH
Q 016973 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL-EPSMSKAYWR---KATAC 80 (379)
Q Consensus 5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l-~p~~~~a~~~---la~~~ 80 (379)
+...+..++.+|++-+|....++.|...|.+..++..--.+++-+|+.......+++++-. +++.+-.-|. ++.++
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL 185 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGL 185 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhH
Confidence 3445667888999999999999999999999888777777778889988888888888866 6665443333 45567
Q ss_pred HhccCHHHHHHHHHHHHhcCCCChH
Q 016973 81 MKLEEYETAKVALEKGASLAPGDSR 105 (379)
Q Consensus 81 ~~lg~y~~A~~~~~~a~~l~p~~~~ 105 (379)
..+|-|++|.....+++++++.+-=
T Consensus 186 ~E~g~y~dAEk~A~ralqiN~~D~W 210 (491)
T KOG2610|consen 186 EECGIYDDAEKQADRALQINRFDCW 210 (491)
T ss_pred HHhccchhHHHHHHhhccCCCcchH
Confidence 7889999999999999999987753
No 292
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.76 E-value=0.12 Score=46.93 Aligned_cols=97 Identities=25% Similarity=0.212 Sum_probs=61.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCC------CCHHHHH
Q 016973 8 KAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKL-QNFTEAVADANRAIELEP------SMSKAYW 74 (379)
Q Consensus 8 ~g~~~~~~g~y~~Al~~y~~al~~~p~~------~~~~~~ra~~~~~l-g~~~eAl~~~~~Al~l~p------~~~~a~~ 74 (379)
.+..+|+..+..+|+.++++++++..+- +..+..+|..|..- .+++.||.+|+.|-..-. .--++++
T Consensus 79 eA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~l 158 (288)
T KOG1586|consen 79 EAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLL 158 (288)
T ss_pred HHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHH
Confidence 3444556667777777777777774332 22233455555443 677777777777765532 1235666
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCCCh
Q 016973 75 RKATACMKLEEYETAKVALEKGASLAPGDS 104 (379)
Q Consensus 75 ~la~~~~~lg~y~~A~~~~~~a~~l~p~~~ 104 (379)
..|..-..+++|.+|+..|++..+..-++.
T Consensus 159 KvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 159 KVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 677777778888888888887766655444
No 293
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.75 E-value=0.32 Score=44.22 Aligned_cols=114 Identities=20% Similarity=0.173 Sum_probs=80.3
Q ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------HH
Q 016973 6 EKKAKEAFID-DYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPSM-------SK 71 (379)
Q Consensus 6 ~~~g~~~~~~-g~y~~Al~~y~~al~~~p~~------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~-------~~ 71 (379)
+..|..|-.. .+++.||.+|+++-+..... --+++..|...-++++|.+|+..|+......-++ -.
T Consensus 117 ~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kd 196 (288)
T KOG1586|consen 117 IEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKD 196 (288)
T ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHH
Confidence 4556666665 78999999999998874322 2345666666677899999999998877654332 23
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHh
Q 016973 72 AYWRKATACMKLEEYETAKVALEKGASLAPGDSR--FTNLIKECEERIAE 119 (379)
Q Consensus 72 a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~--~~~~l~~~~~~l~~ 119 (379)
.++.-|.|++...+.-.+...+++...++|.-.. --..+..+...+..
T Consensus 197 yflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE 246 (288)
T KOG1586|consen 197 YFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEE 246 (288)
T ss_pred HHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhh
Confidence 5667788888889999999999999999997543 23344444444443
No 294
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.71 E-value=0.14 Score=44.83 Aligned_cols=97 Identities=14% Similarity=0.092 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHH----HH
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPS--MSK----AY 73 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~---~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~--~~~----a~ 73 (379)
..+...|+-+++.|+++.|+++|.++....... .+.+++...+.+..+++......+.+|-.+... +.. ..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 356788999999999999999999988764332 567777888888889999999998888876432 222 23
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHhc
Q 016973 74 WRKATACMKLEEYETAKVALEKGASL 99 (379)
Q Consensus 74 ~~la~~~~~lg~y~~A~~~~~~a~~l 99 (379)
...|.++...++|..|...|-.+..-
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcC
Confidence 34577788899999998888766533
No 295
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.71 E-value=0.11 Score=57.43 Aligned_cols=107 Identities=13% Similarity=0.024 Sum_probs=86.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcc
Q 016973 7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS--MSKAYWRKATACMKLE 84 (379)
Q Consensus 7 ~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~--~~~a~~~la~~~~~lg 84 (379)
.....|.+.+.+++|.++|++.+....+....|..+|..+++..+-+.|...+.+|+..-|. +.+..-..|+..|..|
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 34556777888888888888888888777788888888888888888888888888888886 6677777888888888
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 016973 85 EYETAKVALEKGASLAPGDSRFTNLIKEC 113 (379)
Q Consensus 85 ~y~~A~~~~~~a~~l~p~~~~~~~~l~~~ 113 (379)
+.+.+...|+-.+.-+|.-.++|..+...
T Consensus 1615 DaeRGRtlfEgll~ayPKRtDlW~VYid~ 1643 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPKRTDLWSVYIDM 1643 (1710)
T ss_pred CchhhHHHHHHHHhhCccchhHHHHHHHH
Confidence 88888888888888888877766555443
No 296
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.68 E-value=0.066 Score=49.70 Aligned_cols=75 Identities=16% Similarity=0.143 Sum_probs=60.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 016973 39 FADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (379)
Q Consensus 39 ~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~ 113 (379)
..++=..|...++++.|+.+..+.+.++|.++.-+.-+|.+|.++|.+.-|+..++..++..|+++.+......+
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 344445566778899999999999999999998889999999999999999999999899999888765444433
No 297
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.66 E-value=0.087 Score=48.09 Aligned_cols=96 Identities=21% Similarity=0.261 Sum_probs=67.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh----C--CCCHHH
Q 016973 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIEL----E--PSMSKA 72 (379)
Q Consensus 5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l----~--p~~~~a 72 (379)
-..++-.+..+.+.++|+++|++++.+.-.. .+++...+..|.++++|.+|-..+.+-..+ + ++-.++
T Consensus 113 aleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~ 192 (308)
T KOG1585|consen 113 ALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKA 192 (308)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHH
Confidence 3456666777888888888898888874332 566777778888888888877666554332 2 334555
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC
Q 016973 73 YWRKATACMKLEEYETAKVALEKGASLA 100 (379)
Q Consensus 73 ~~~la~~~~~lg~y~~A~~~~~~a~~l~ 100 (379)
+...-.+|..+.+|..|..+|+.+.++.
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip 220 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIP 220 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence 6666666777779999998888876664
No 298
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.63 E-value=0.063 Score=51.59 Aligned_cols=95 Identities=16% Similarity=0.007 Sum_probs=79.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------CC
Q 016973 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS----------AELFADRAQASIKLQNFTEAVADANRAIELE------PS 68 (379)
Q Consensus 5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~----------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~------p~ 68 (379)
+...|..+-...||++|+-+..+|+++..+- ...++.++.++..+|.+..|.++++.|.++. +.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 4457788888999999999999999883321 4567889999999999999999999998874 34
Q ss_pred CHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 016973 69 MSKAYWRKATACMKLEEYETAKVALEKGASL 99 (379)
Q Consensus 69 ~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l 99 (379)
....+.-+|.+|..+|+.+.|..-|+.|...
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 5678888999999999999999888888765
No 299
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.62 E-value=0.11 Score=38.84 Aligned_cols=64 Identities=17% Similarity=0.226 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAE---LFADRAQASIKLQNFTEAVADANRAIEL 65 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~---~~~~ra~~~~~lg~~~eAl~~~~~Al~l 65 (379)
+...++.|..+|...+.++|+..+.++|+..++... ++-.++.+|...|+|.+++.++..=+.+
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999877654 4455666778889999988877665554
No 300
>PRK10743 heat shock protein IbpA; Provisional
Probab=95.56 E-value=0.083 Score=44.31 Aligned_cols=74 Identities=9% Similarity=0.112 Sum_probs=60.0
Q ss_pred cccc-ccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcC----CC---------ceeeeccccccccccCcceEEEeC
Q 016973 181 HEFY-QKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP----GE---------EAYHFQPRLFGKIIPAKCRYEVLS 246 (379)
Q Consensus 181 ~~W~-Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~----~~---------~~~~~~~~L~~~I~p~~s~~~v~~ 246 (379)
++-+ .+++.+.|.+.++|+.+++|.|++..+.|+|+.... ++ ..|.-.+.|-..|++++ -+..+
T Consensus 37 ~di~ee~~~~~~v~aelPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~~--A~~~d 114 (137)
T PRK10743 37 YNVELVDENHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVRG--ANLVN 114 (137)
T ss_pred EEEEEcCCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccCc--CEEeC
Confidence 6677 489999999999999999999999999999986421 11 13555778889999984 67788
Q ss_pred cEEEEEEeec
Q 016973 247 TKVEIRLAKA 256 (379)
Q Consensus 247 ~kiei~L~K~ 256 (379)
.-+.|+|.|.
T Consensus 115 GVL~I~lPK~ 124 (137)
T PRK10743 115 GLLYIDLERV 124 (137)
T ss_pred CEEEEEEeCC
Confidence 8899999986
No 301
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.45 E-value=0.37 Score=46.36 Aligned_cols=119 Identities=18% Similarity=0.140 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CC---------
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPN----SAELFADRAQASIKLQNFTEAVADANRAIEL-EP--------- 67 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~----~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l-~p--------- 67 (379)
+..+...+..+.+.|.++.|...+.++...++. .+.+.+..|..+...|+..+|+..+...+.. ..
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~ 225 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNA 225 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHH
Confidence 456788899999999999999999999886522 4677888899999999999999999888871 00
Q ss_pred ------------------------CCHHHHHHHHHHHHhc------cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 016973 68 ------------------------SMSKAYWRKATACMKL------EEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (379)
Q Consensus 68 ------------------------~~~~a~~~la~~~~~l------g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l 117 (379)
..+++++.+|.-...+ +.+++++..|..+..++|+....+...+.....+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 226 ELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred HHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 1356778888888778 8899999999999999998887666666665555
Q ss_pred Hhh
Q 016973 118 AEE 120 (379)
Q Consensus 118 ~~~ 120 (379)
-..
T Consensus 306 ~~~ 308 (352)
T PF02259_consen 306 LES 308 (352)
T ss_pred HHh
Confidence 444
No 302
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=95.39 E-value=0.083 Score=40.24 Aligned_cols=70 Identities=16% Similarity=0.127 Sum_probs=55.7
Q ss_pred cCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcC---CCc-----eeeeccccccccccCcceEEEe-CcEEEEEEee
Q 016973 186 KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GEE-----AYHFQPRLFGKIIPAKCRYEVL-STKVEIRLAK 255 (379)
Q Consensus 186 t~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~---~~~-----~~~~~~~L~~~I~p~~s~~~v~-~~kiei~L~K 255 (379)
.++...|.+.++|+.+++++|++..+.|.|+.... .+. .|.-.+.|-..|++++-+-+.. ...+.|+|-|
T Consensus 5 ~~d~y~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~~Pr 83 (83)
T cd06476 5 EDDKYQVFLDVCHFTPDEITVRTVDNLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQAPR 83 (83)
T ss_pred cCCeEEEEEEcCCCCHHHeEEEEECCEEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEEEEEecC
Confidence 45678899999999999999999999999987531 111 2555678999999999999996 7788888754
No 303
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.39 E-value=0.4 Score=47.56 Aligned_cols=70 Identities=16% Similarity=0.275 Sum_probs=54.5
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHHHHh
Q 016973 46 SIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD----SRFTNLIKECEERIAE 119 (379)
Q Consensus 46 ~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~----~~~~~~l~~~~~~l~~ 119 (379)
++..|+|.++.-...=..+++| .+.++..+|.|++..++|.+|..++... -|++ ..+...+..|++.+..
T Consensus 472 Lysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L---P~n~~~~dskvqKAl~lCqKh~~k 545 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL---PPNERMRDSKVQKALALCQKHLPK 545 (549)
T ss_pred HHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC---CCchhhHHHHHHHHHHHHHHhhhh
Confidence 4566999999988888889999 9999999999999999999999988654 3332 3355566666665544
No 304
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.37 E-value=0.15 Score=39.49 Aligned_cols=65 Identities=17% Similarity=0.103 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHh
Q 016973 55 AVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD--SRFTNLIKECEERIAE 119 (379)
Q Consensus 55 Al~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~--~~~~~~l~~~~~~l~~ 119 (379)
.+..+..++..+|.+..+.|.+|.++...|+|++|+..|-.+++.+++. ......+-.+-..++.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 4667889999999999999999999999999999999999999998765 4555555555555554
No 305
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.34 E-value=0.27 Score=48.13 Aligned_cols=79 Identities=15% Similarity=0.077 Sum_probs=66.8
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------------CC---------------CCHHHHHHHH
Q 016973 27 QAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL--------------EP---------------SMSKAYWRKA 77 (379)
Q Consensus 27 ~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l--------------~p---------------~~~~a~~~la 77 (379)
..|..+|-+.+.++.++.++.++|++..|...+++|+-. +. ....+.+|..
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 445678999999999999999999999999999888722 11 1356888999
Q ss_pred HHHHhccCHHHHHHHHHHHHhcCCC-ChH
Q 016973 78 TACMKLEEYETAKVALEKGASLAPG-DSR 105 (379)
Q Consensus 78 ~~~~~lg~y~~A~~~~~~a~~l~p~-~~~ 105 (379)
..+.+.|.+..|+++++-.+.++|. |+-
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~ 139 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPL 139 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcc
Confidence 9999999999999999999999998 664
No 306
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.29 E-value=0.57 Score=42.92 Aligned_cols=102 Identities=22% Similarity=0.169 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCCHH
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELE-----PSMSK 71 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~-----p~~~~ 71 (379)
..+...+..+-...+|+.|-.++.+|+....+| +-+|-..|..+..+..+.++...|++|..+- |+-+.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAA 111 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAA 111 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHH
Confidence 345555667777899999999999999765544 3345566677777888999999999998773 44444
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCh
Q 016973 72 AYWRKATACMKLEEYETAKVALEKGASLAPGDS 104 (379)
Q Consensus 72 a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~ 104 (379)
.-+.+|--....-+.++|+..|++++.+--.+.
T Consensus 112 maleKAak~lenv~Pd~AlqlYqralavve~~d 144 (308)
T KOG1585|consen 112 MALEKAAKALENVKPDDALQLYQRALAVVEEDD 144 (308)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccc
Confidence 444455555667788999999999888754443
No 307
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.19 E-value=0.89 Score=44.55 Aligned_cols=108 Identities=16% Similarity=0.088 Sum_probs=78.1
Q ss_pred HHHHHHHHH---cCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhCCCC---
Q 016973 6 EKKAKEAFI---DDYFELAYDLYSQAI-EISPNSAELFADRAQASIKL---------QNFTEAVADANRAIELEPSM--- 69 (379)
Q Consensus 6 ~~~g~~~~~---~g~y~~Al~~y~~al-~~~p~~~~~~~~ra~~~~~l---------g~~~eAl~~~~~Al~l~p~~--- 69 (379)
+..|.++.+ .|+.+.|+..+..++ ...+.+++.+.-.|.+|-.+ ..+++|+..|.++++++|+.
T Consensus 183 ~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~G 262 (374)
T PF13281_consen 183 FQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSG 262 (374)
T ss_pred HHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccch
Confidence 456777777 899999999998844 45667788888888887543 34788999999999888641
Q ss_pred ------------------------------------------HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHH
Q 016973 70 ------------------------------------------SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT 107 (379)
Q Consensus 70 ------------------------------------------~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~ 107 (379)
.-.+-.++.+..-.|+++.|..++++++++.|..=...
T Consensus 263 IN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~ 342 (374)
T PF13281_consen 263 INAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELE 342 (374)
T ss_pred HHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHH
Confidence 00112245556668889999999999999987655444
Q ss_pred HHHHHH
Q 016973 108 NLIKEC 113 (379)
Q Consensus 108 ~~l~~~ 113 (379)
..+..+
T Consensus 343 St~~ni 348 (374)
T PF13281_consen 343 STLENI 348 (374)
T ss_pred HHHHHH
Confidence 444444
No 308
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.14 E-value=0.12 Score=47.88 Aligned_cols=74 Identities=18% Similarity=0.177 Sum_probs=66.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 016973 7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (379)
Q Consensus 7 ~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~ 80 (379)
+.=..+.+.++++.|+.+-.+.|.++|.++.-+.-||.+|.++|.+.-|+++++..++..|+.+.+-+-++...
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~ 259 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL 259 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 34467889999999999999999999999999999999999999999999999999999999888777666443
No 309
>PLN03077 Protein ECB2; Provisional
Probab=95.08 E-value=0.25 Score=54.02 Aligned_cols=108 Identities=13% Similarity=0.072 Sum_probs=80.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Q 016973 7 KKAKEAFIDDYFELAYDLYSQAIEISP--NSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (379)
Q Consensus 7 ~~g~~~~~~g~y~~Al~~y~~al~~~p--~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg 84 (379)
..-..+.+.|.+++|+.+|+......+ -+...|..+..+|.+.|++++|.+.++.. .+.| +...|-.+-.+|...|
T Consensus 594 ~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-d~~~~~aLl~ac~~~~ 671 (857)
T PLN03077 594 SLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITP-DPAVWGALLNACRIHR 671 (857)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcC
Confidence 344567788999999999988874422 23567888888888999999998888764 3444 3566666666777788
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 016973 85 EYETAKVALEKGASLAPGDSRFTNLIKECEER 116 (379)
Q Consensus 85 ~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 116 (379)
+.+.|....+++++++|++......+..+...
T Consensus 672 ~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~ 703 (857)
T PLN03077 672 HVELGELAAQHIFELDPNSVGYYILLCNLYAD 703 (857)
T ss_pred ChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH
Confidence 88888888888888888888777666655543
No 310
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=94.96 E-value=0.11 Score=39.99 Aligned_cols=68 Identities=15% Similarity=0.202 Sum_probs=52.8
Q ss_pred cCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcC-----C-C------ceeeeccccccccccCcceEEE-eCcEEEEE
Q 016973 186 KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP-----G-E------EAYHFQPRLFGKIIPAKCRYEV-LSTKVEIR 252 (379)
Q Consensus 186 t~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~-----~-~------~~~~~~~~L~~~I~p~~s~~~v-~~~kiei~ 252 (379)
..+.+.|.+.++|+.+++|.|++..+.|.|+.... + + ..|.-.+.|-..|+++..+-.+ ...-+.|.
T Consensus 5 ~~d~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~ 84 (87)
T cd06481 5 GKEGFSLKLDVRGFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHLHIR 84 (87)
T ss_pred ccceEEEEEECCCCChHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCCceEEEE
Confidence 35678999999999999999999999999986421 1 1 2355677899999999988888 55566665
Q ss_pred E
Q 016973 253 L 253 (379)
Q Consensus 253 L 253 (379)
+
T Consensus 85 ~ 85 (87)
T cd06481 85 A 85 (87)
T ss_pred c
Confidence 4
No 311
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=94.94 E-value=0.14 Score=43.19 Aligned_cols=74 Identities=9% Similarity=0.123 Sum_probs=58.8
Q ss_pred ccccc-cCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcC----CC---------ceeeeccccccccccCcceEEEeC
Q 016973 181 HEFYQ-KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP----GE---------EAYHFQPRLFGKIIPAKCRYEVLS 246 (379)
Q Consensus 181 ~~W~Q-t~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~----~~---------~~~~~~~~L~~~I~p~~s~~~v~~ 246 (379)
++=++ +++.+.|++.++|+.+++|.|++..+.|+|+.... ++ ..|.-.+.|-..|+++ +-+..+
T Consensus 35 vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~--~A~~~n 112 (142)
T PRK11597 35 YNIEKSDDNHYRITLALAGFRQEDLDIQLEGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS--GATFVN 112 (142)
T ss_pred EEEEEcCCCEEEEEEEeCCCCHHHeEEEEECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--cCEEcC
Confidence 55566 46789999999999999999999999999987521 11 1355667788889988 477788
Q ss_pred cEEEEEEeec
Q 016973 247 TKVEIRLAKA 256 (379)
Q Consensus 247 ~kiei~L~K~ 256 (379)
.-+.|+|-|.
T Consensus 113 GVL~I~lPK~ 122 (142)
T PRK11597 113 GLLHIDLIRN 122 (142)
T ss_pred CEEEEEEecc
Confidence 8899999986
No 312
>PLN03077 Protein ECB2; Provisional
Probab=94.93 E-value=0.27 Score=53.78 Aligned_cols=108 Identities=14% Similarity=0.127 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHH
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEI--SPNSAELFADRAQASIKLQNFTEAVADANRAIELEP--SMSKAYWRKATA 79 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~--~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p--~~~~a~~~la~~ 79 (379)
.|......|...|+.++|+.+|++.++. .|+... |..+-.++.+.|.+++|+..|+....... -+...|..+..+
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T-~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~ 634 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT-FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDL 634 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc-HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 4667778899999999999999998874 565444 44555678899999999999999884432 245788889999
Q ss_pred HHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 016973 80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (379)
Q Consensus 80 ~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~ 113 (379)
|.+.|++++|...+++. .+.|+...+...+..|
T Consensus 635 l~r~G~~~eA~~~~~~m-~~~pd~~~~~aLl~ac 667 (857)
T PLN03077 635 LGRAGKLTEAYNFINKM-PITPDPAVWGALLNAC 667 (857)
T ss_pred HHhCCCHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Confidence 99999999999999875 4667655444444443
No 313
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.93 E-value=0.75 Score=38.93 Aligned_cols=86 Identities=15% Similarity=-0.088 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l 83 (379)
.++..........+.+++..++...--+.|+.+++-..-|..++..|++.+|+..++....-.+..+-+--.++.|++-+
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al 91 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK 91 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence 45666677777999999999999988899999999999999999999999999999999888888888888899999999
Q ss_pred cCHHHH
Q 016973 84 EEYETA 89 (379)
Q Consensus 84 g~y~~A 89 (379)
|+..==
T Consensus 92 ~Dp~Wr 97 (153)
T TIGR02561 92 GDAEWH 97 (153)
T ss_pred CChHHH
Confidence 997643
No 314
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.80 E-value=0.055 Score=48.88 Aligned_cols=60 Identities=27% Similarity=0.279 Sum_probs=56.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 016973 10 KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM 69 (379)
Q Consensus 10 ~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~ 69 (379)
..+...++.+.|.++|.++|.+.|....-|+++|....+.|+++.|.+.|.+.++++|.+
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 456788999999999999999999999999999999999999999999999999999864
No 315
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.80 E-value=0.22 Score=38.71 Aligned_cols=56 Identities=20% Similarity=0.253 Sum_probs=28.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC----C-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 016973 11 EAFIDDYFELAYDLYSQAIEISPN----S-----AELFADRAQASIKLQNFTEAVADANRAIELE 66 (379)
Q Consensus 11 ~~~~~g~y~~Al~~y~~al~~~p~----~-----~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~ 66 (379)
...+.|+|..|++.+.+.+..... . ..+++++|.++...|++++|+..++.|+.+.
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 445566666665555555544111 1 2344445555555555555555555555443
No 316
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.68 E-value=0.0081 Score=57.06 Aligned_cols=74 Identities=19% Similarity=0.249 Sum_probs=67.1
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973 47 IKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (379)
Q Consensus 47 ~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (379)
+..|.++.|+..|..|+.++|.....|-.++.++..+++...|+..|..++.++|+...-..+...++..|+.-
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNW 198 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhch
Confidence 34588999999999999999999999999999999999999999999999999999888777777777776664
No 317
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.61 E-value=0.21 Score=47.66 Aligned_cols=85 Identities=14% Similarity=0.005 Sum_probs=44.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHh-CCCCHH---HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCH
Q 016973 11 EAFIDDYFELAYDLYSQAIEI-SPNSAE---LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY 86 (379)
Q Consensus 11 ~~~~~g~y~~Al~~y~~al~~-~p~~~~---~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y 86 (379)
.+|-+|+...-...+.+++-. ++.-+. +.--+|-++...|-|++|...+++|+++++.+.-+...++.++...|++
T Consensus 146 a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~ 225 (491)
T KOG2610|consen 146 AHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRH 225 (491)
T ss_pred HHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchh
Confidence 455555555555555555554 333322 2222444455555666666666666666665555555555555555555
Q ss_pred HHHHHHHHH
Q 016973 87 ETAKVALEK 95 (379)
Q Consensus 87 ~~A~~~~~~ 95 (379)
.++.+++.+
T Consensus 226 Keg~eFM~~ 234 (491)
T KOG2610|consen 226 KEGKEFMYK 234 (491)
T ss_pred hhHHHHHHh
Confidence 555555443
No 318
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.35 E-value=0.49 Score=39.36 Aligned_cols=75 Identities=15% Similarity=0.127 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHH-hCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 016973 4 DLEKKAKEAFIDDY---FELAYDLYSQAIE-ISPNS-AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT 78 (379)
Q Consensus 4 ~l~~~g~~~~~~g~---y~~Al~~y~~al~-~~p~~-~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~ 78 (379)
..|+.+.++.+..+ ..+.|.++...+. -+|.. -++++.+|..++++++|+.|+++++..++..|++.++.-..-.
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ 113 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKET 113 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 45667777776554 4688999999997 44443 5678889999999999999999999999999999887654433
No 319
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.28 E-value=0.65 Score=39.86 Aligned_cols=84 Identities=14% Similarity=0.118 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 016973 37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER 116 (379)
Q Consensus 37 ~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 116 (379)
..+.....+-.+.++.+++...+...-.+.|..+..-+.-|..+...|+|.+|+..|+.+..-.|..+-.+..++.|...
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 45666777777889999999999988899999999999999999999999999999999999999999888888998877
Q ss_pred HHhh
Q 016973 117 IAEE 120 (379)
Q Consensus 117 l~~~ 120 (379)
++..
T Consensus 91 ~~D~ 94 (160)
T PF09613_consen 91 LGDP 94 (160)
T ss_pred cCCh
Confidence 6654
No 320
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=94.24 E-value=0.21 Score=38.35 Aligned_cols=66 Identities=18% Similarity=0.149 Sum_probs=51.2
Q ss_pred cCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcC------CCc-----eeeeccccccccccCcceEEEeCc-EEEE
Q 016973 186 KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP------GEE-----AYHFQPRLFGKIIPAKCRYEVLST-KVEI 251 (379)
Q Consensus 186 t~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~------~~~-----~~~~~~~L~~~I~p~~s~~~v~~~-kiei 251 (379)
.++.+.|++-++|+.+++|.|.+..+.|+|+.... +.. .|.-.+.|-..|++++.+-+..+. .+.|
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i 83 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKI 83 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEEE
Confidence 35679999999999999999999999999997532 111 244467888889999888888776 5544
No 321
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.12 E-value=2.2 Score=40.12 Aligned_cols=100 Identities=13% Similarity=0.040 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh----CCCC----------HHHHHHHHHHHHHccCHHH---HHHHHHHHH
Q 016973 2 ATDLEKKAKEAFIDD-YFELAYDLYSQAIEI----SPNS----------AELFADRAQASIKLQNFTE---AVADANRAI 63 (379)
Q Consensus 2 A~~l~~~g~~~~~~g-~y~~Al~~y~~al~~----~p~~----------~~~~~~ra~~~~~lg~~~e---Al~~~~~Al 63 (379)
++.+++.|..++..+ +|+.|+..+++++++ .... ...+..++.+|...+.++. |+...+.+.
T Consensus 35 a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~ 114 (278)
T PF08631_consen 35 ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLE 114 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 678899999999999 999999999999998 2211 4556778888888877654 444444444
Q ss_pred HhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 016973 64 ELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP 101 (379)
Q Consensus 64 ~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p 101 (379)
...|+.+..++..-.++...++.+.+...+.+.+..-+
T Consensus 115 ~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 115 SEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 45577666664444455558888888888888877654
No 322
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.00 E-value=1 Score=43.21 Aligned_cols=99 Identities=24% Similarity=0.115 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC--------------------------C-------HHHHHHHHHHHHHc
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEI-SPN--------------------------S-------AELFADRAQASIKL 49 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~-~p~--------------------------~-------~~~~~~ra~~~~~l 49 (379)
..+..+..+...|+..+|+..+...+.. ... . ..+++.+|.....+
T Consensus 186 v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~ 265 (352)
T PF02259_consen 186 VFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDEL 265 (352)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhh
Confidence 4567888999999999999999988881 110 1 34455555555556
Q ss_pred ------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCH-----------------HHHHHHHHHHHhcCCC
Q 016973 50 ------QNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY-----------------ETAKVALEKGASLAPG 102 (379)
Q Consensus 50 ------g~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y-----------------~~A~~~~~~a~~l~p~ 102 (379)
+.+++++..|..|+.++|...++|+.+|..+..+=+. ..|+.+|-+|+.+.+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 266 YSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred ccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 7788899999999999999999999999988765222 3488888888888877
No 323
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=93.80 E-value=0.15 Score=48.07 Aligned_cols=86 Identities=13% Similarity=0.106 Sum_probs=73.7
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHhccCHHHHHHHHHHHHhcCCCC
Q 016973 25 YSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR-KATACMKLEEYETAKVALEKGASLAPGD 103 (379)
Q Consensus 25 y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~-la~~~~~lg~y~~A~~~~~~a~~l~p~~ 103 (379)
|.++-...++++.+|...+.-..+.|.|.+-...|..+++.+|.+...|.. .+.-++..++.+.+.+.|.++++++|.+
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 445555677888888888888888899999999999999999999999987 5667888999999999999999999999
Q ss_pred hHHHHHH
Q 016973 104 SRFTNLI 110 (379)
Q Consensus 104 ~~~~~~l 110 (379)
+..+...
T Consensus 176 p~iw~ey 182 (435)
T COG5191 176 PRIWIEY 182 (435)
T ss_pred chHHHHH
Confidence 9765443
No 324
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.79 E-value=0.15 Score=32.39 Aligned_cols=29 Identities=28% Similarity=0.354 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~ 31 (379)
..+.+.|..++..|+|++|+.++.+++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 34444555555555555555555555443
No 325
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.79 E-value=0.16 Score=32.32 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 016973 38 LFADRAQASIKLQNFTEAVADANRAIEL 65 (379)
Q Consensus 38 ~~~~ra~~~~~lg~~~eAl~~~~~Al~l 65 (379)
.+.++|.+|..+|++++|+..+.+++.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 3455555555555555555555555544
No 326
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.73 E-value=0.64 Score=36.06 Aligned_cols=57 Identities=23% Similarity=0.325 Sum_probs=47.5
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 016973 45 ASIKLQNFTEAVADANRAIELEPS---------MSKAYWRKATACMKLEEYETAKVALEKGASLAP 101 (379)
Q Consensus 45 ~~~~lg~~~eAl~~~~~Al~l~p~---------~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p 101 (379)
-..+.|+|.+|++.+.+.+..... ...+++.+|.++...|++++|+..+++++++..
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 345789999999988888866431 246789999999999999999999999999864
No 327
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=93.40 E-value=0.38 Score=49.11 Aligned_cols=75 Identities=19% Similarity=0.117 Sum_probs=67.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 016973 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA 79 (379)
Q Consensus 5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~ 79 (379)
+.+.|+.+...|-..+|-.++.++|.++...+..++-+|.+|+.+++.+.|++.|..|+.++|+++.+.-.+-.+
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 467899999999999999999999999988899999999999999999999999999999999988776555443
No 328
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.33 E-value=1.1 Score=45.78 Aligned_cols=102 Identities=19% Similarity=0.061 Sum_probs=83.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH-HHHhCCCCHHHHHHH------HHHHH
Q 016973 9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR-AIELEPSMSKAYWRK------ATACM 81 (379)
Q Consensus 9 g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~-Al~l~p~~~~a~~~l------a~~~~ 81 (379)
...+...++...|...+..++..+|.+..++.++|.+....|....++..+.. +....|.+..+...+ |..+.
T Consensus 74 si~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (620)
T COG3914 74 SILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLK 153 (620)
T ss_pred HhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHH
Confidence 34455567777888889999999999999999999999888877666665555 888899888777666 88888
Q ss_pred hccCHHHHHHHHHHHHhcCCCChHHHHHH
Q 016973 82 KLEEYETAKVALEKGASLAPGDSRFTNLI 110 (379)
Q Consensus 82 ~lg~y~~A~~~~~~a~~l~p~~~~~~~~l 110 (379)
.+|+..++..++.++..+.|.++.....+
T Consensus 154 ~l~~~~~~~~~l~~~~d~~p~~~~~~~~~ 182 (620)
T COG3914 154 LLGRTAEAELALERAVDLLPKYPRVLGAL 182 (620)
T ss_pred HhccHHHHHHHHHHHHHhhhhhhhhHhHH
Confidence 89999999999999999999887654443
No 329
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=93.26 E-value=1.3 Score=49.55 Aligned_cols=98 Identities=14% Similarity=0.066 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPN--SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~--~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~ 81 (379)
.|...|..++++.+-+.|..++.+||..-|. +..+....|..-++.|+-+.+...|+-.+.-.|.-...|.-+...-.
T Consensus 1566 vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~ei 1645 (1710)
T KOG1070|consen 1566 VWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEI 1645 (1710)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHH
Confidence 5778899999999999999999999999998 78999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHHHHhcCC
Q 016973 82 KLEEYETAKVALEKGASLAP 101 (379)
Q Consensus 82 ~lg~y~~A~~~~~~a~~l~p 101 (379)
..|+-+-+...|++++.+.=
T Consensus 1646 k~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1646 KHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred ccCCHHHHHHHHHHHHhcCC
Confidence 99999999999999988753
No 330
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=93.22 E-value=0.4 Score=46.08 Aligned_cols=65 Identities=25% Similarity=0.354 Sum_probs=54.7
Q ss_pred cCCeEEEEEEeCCC-CCCceEEEEeecEEEEEEEcCCCceeeeccccccccccCcceEEEeC--cEEEEEE
Q 016973 186 KPEEVVVTVFAKGI-PAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLS--TKVEIRL 253 (379)
Q Consensus 186 t~~~V~i~i~~k~~-~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~--~kiei~L 253 (379)
....+.|.|.++++ ...++.+++.++.|.|.+... .|.|.|.|-.+|+++.++-+... ..+.|+|
T Consensus 259 ~p~~lvv~i~LP~~~s~~~i~LdV~~~~l~l~~~~~---~y~L~l~LP~~V~~~~~~Akf~~~~~~L~vtl 326 (328)
T PF08190_consen 259 SPEELVVEIELPGVESASDIDLDVSEDRLSLSSPKP---KYRLDLPLPYPVDEDNGKAKFDKKTKTLTVTL 326 (328)
T ss_pred CCceEEEEEECCCcCccceeEEEEeCCEEEEEeCCC---ceEEEccCCCcccCCCceEEEccCCCEEEEEE
Confidence 46789999999998 679999999999999987632 69999999999999998877655 4677776
No 331
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=93.22 E-value=3.3 Score=38.80 Aligned_cols=97 Identities=15% Similarity=-0.041 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcc-------CHHHHHHHHHHHHHhCCCCH
Q 016973 3 TDLEKKAKEAFI----DDYFELAYDLYSQAIEISPNS-AELFADRAQASIKLQ-------NFTEAVADANRAIELEPSMS 70 (379)
Q Consensus 3 ~~l~~~g~~~~~----~g~y~~Al~~y~~al~~~p~~-~~~~~~ra~~~~~lg-------~~~eAl~~~~~Al~l~p~~~ 70 (379)
..++..|..++. ..++.+|+.+|.+|....... ....+.++.+|..-. +...|+..|.+|.... +.
T Consensus 110 ~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~ 187 (292)
T COG0790 110 EALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NP 187 (292)
T ss_pred HHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CH
Confidence 356667777776 559999999999999985544 345778888876631 2347888898888777 78
Q ss_pred HHHHHHHHHHHh----ccCHHHHHHHHHHHHhcCC
Q 016973 71 KAYWRKATACMK----LEEYETAKVALEKGASLAP 101 (379)
Q Consensus 71 ~a~~~la~~~~~----lg~y~~A~~~~~~a~~l~p 101 (379)
.+.+++|.+|.. ..++.+|..+|.++.+...
T Consensus 188 ~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 188 DAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999988865 4488999999999998877
No 332
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=93.01 E-value=0.65 Score=35.31 Aligned_cols=68 Identities=6% Similarity=-0.033 Sum_probs=50.7
Q ss_pred ccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcC----CCc----eeeeccccccccccCcceEEEe-CcEEEEE
Q 016973 185 QKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP----GEE----AYHFQPRLFGKIIPAKCRYEVL-STKVEIR 252 (379)
Q Consensus 185 Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~----~~~----~~~~~~~L~~~I~p~~s~~~v~-~~kiei~ 252 (379)
.+++...|.+.++|+.+++|+|++..+.|+|+.... .+. .|.-.+.|-..|++++.+-+.. ..-+.|.
T Consensus 4 e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~ 80 (83)
T cd06477 4 EGKPMFQILLDVVQFRPEDIIIQVFEGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVE 80 (83)
T ss_pred cCCceEEEEEEcCCCCHHHeEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCCEEEEE
Confidence 456788999999999999999999999999997531 111 2444567888899988877763 4444443
No 333
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.00 E-value=1.6 Score=45.28 Aligned_cols=92 Identities=16% Similarity=0.017 Sum_probs=74.2
Q ss_pred HHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHH
Q 016973 5 LEKKAKEAFIDD-----YFELAYDLYSQAIEISPNSAELFADRAQASIKLQ---NFTEAVADANRAIELEPSMSKAYWRK 76 (379)
Q Consensus 5 l~~~g~~~~~~g-----~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg---~~~eAl~~~~~Al~l~p~~~~a~~~l 76 (379)
+...|.+|++.. ++..|+.+|.++..... +.+.+.+|.|+..-. ++..|..+|..|.... +..+++++
T Consensus 291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~--~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~l 366 (552)
T KOG1550|consen 291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN--PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYRL 366 (552)
T ss_pred ccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC--chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHHH
Confidence 456778888743 78899999999988754 566788888987765 5788999999887665 68999999
Q ss_pred HHHHHh----ccCHHHHHHHHHHHHhcC
Q 016973 77 ATACMK----LEEYETAKVALEKGASLA 100 (379)
Q Consensus 77 a~~~~~----lg~y~~A~~~~~~a~~l~ 100 (379)
|.||.. .-+...|..+|.++.+.+
T Consensus 367 a~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 367 ALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 998864 347889999999999887
No 334
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=92.96 E-value=0.38 Score=40.52 Aligned_cols=48 Identities=19% Similarity=0.239 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ 50 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg 50 (379)
+.++.++..++..|+|.-|+++.+.++..+|++..+...++.+|.++|
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 345555666666666666666666666666666666666666555544
No 335
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=92.73 E-value=2.4 Score=43.98 Aligned_cols=117 Identities=21% Similarity=0.149 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------------CHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPN------------------SAELFADRAQASIKLQNFTEAVADANRAI 63 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~------------------~~~~~~~ra~~~~~lg~~~eAl~~~~~Al 63 (379)
|..|..-|..-++..+++.|+.+..+|+..-.+ +..+|...+.....+|.++.....|++.+
T Consensus 425 a~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdrii 504 (835)
T KOG2047|consen 425 AEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRII 504 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 456667777777777888888877777665211 12334445555555677777777777777
Q ss_pred HhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 016973 64 ELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (379)
Q Consensus 64 ~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~ 118 (379)
.+.--.+..-.+.|..+.....+++|...|++++.|-+=-...-.|..-+..-++
T Consensus 505 dLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ 559 (835)
T KOG2047|consen 505 DLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIK 559 (835)
T ss_pred HHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHH
Confidence 7766666666666666666666666766666666665443334444444444333
No 336
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.52 E-value=0.54 Score=48.44 Aligned_cols=73 Identities=12% Similarity=0.130 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHH
Q 016973 37 ELFADRAQASIKLQNFTEAVADANRAIELEP------SMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNL 109 (379)
Q Consensus 37 ~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p------~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~ 109 (379)
.++-+-|.-+++..+|..+++.|...+..-| .+.+.+..++.||..+.+.+.|.++++.|-+.+|.++-.+..
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~ 433 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLL 433 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 3456678888999999999999999997755 357888999999999999999999999999999988754433
No 337
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=92.41 E-value=1.5 Score=39.75 Aligned_cols=77 Identities=18% Similarity=0.005 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 016973 3 TDLEKKAKEAFIDDY-------FELAYDLYSQAIEISPN------SAELFADRAQASIKLQNFTEAVADANRAIELEPSM 69 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~-------y~~Al~~y~~al~~~p~------~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~ 69 (379)
..+...|-.+-..|+ +..|+..|.+++..... ...+++.+|.+++++|++++|++.|.+++......
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 344555555555666 56777777777776433 15678889999999999999999999999775433
Q ss_pred H-HHHHHHHHH
Q 016973 70 S-KAYWRKATA 79 (379)
Q Consensus 70 ~-~a~~~la~~ 79 (379)
. ..+..+|.-
T Consensus 199 ~~~~l~~~AR~ 209 (214)
T PF09986_consen 199 KEPKLKDMARD 209 (214)
T ss_pred CcHHHHHHHHH
Confidence 3 455555543
No 338
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=92.33 E-value=0.97 Score=48.01 Aligned_cols=96 Identities=15% Similarity=0.076 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH----------HHhCCCC----------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQA----------IEISPNS----------AELFADRAQASIKLQNFTEAVADANRAI 63 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~a----------l~~~p~~----------~~~~~~ra~~~~~lg~~~eAl~~~~~Al 63 (379)
.+++.|..+-..++...|+++|.++ |..+|.. ..+|..-|.-+...|+.+.|+..|+.|-
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 5677788888899999999998764 3334543 3445556777778899999999998876
Q ss_pred HhC---------------------CCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 016973 64 ELE---------------------PSMSKAYWRKATACMKLEEYETAKVALEKGASL 99 (379)
Q Consensus 64 ~l~---------------------p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l 99 (379)
... ..+..|.|.+|..|...|++.+|+.+|.+|..+
T Consensus 940 D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 940 DYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred hhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 442 246778999999999999999999999988654
No 339
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.27 E-value=2 Score=44.66 Aligned_cols=105 Identities=13% Similarity=0.001 Sum_probs=78.9
Q ss_pred HHHHHHHHHH-----cCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHcc-----CHHHHHHHHHHHHHhCC
Q 016973 5 LEKKAKEAFI-----DDYFELAYDLYSQAIE-------ISPNSAELFADRAQASIKLQ-----NFTEAVADANRAIELEP 67 (379)
Q Consensus 5 l~~~g~~~~~-----~g~y~~Al~~y~~al~-------~~p~~~~~~~~ra~~~~~lg-----~~~eAl~~~~~Al~l~p 67 (379)
....|.+++. ..|.+.|+.+|..++. .. ++.+.+.+|.||.+.. ++..|+..+.+|..+.
T Consensus 247 ~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g- 323 (552)
T KOG1550|consen 247 QYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG- 323 (552)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-
Confidence 3445555544 4789999999999988 32 4557888999998853 6788999999998876
Q ss_pred CCHHHHHHHHHHHHhcc---CHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 016973 68 SMSKAYWRKATACMKLE---EYETAKVALEKGASLAPGDSRFTNLIKECEE 115 (379)
Q Consensus 68 ~~~~a~~~la~~~~~lg---~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 115 (379)
++.+.+++|.++..-. ++..|..+|..|.... +..+..+++.|..
T Consensus 324 -~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~la~~y~ 371 (552)
T KOG1550|consen 324 -NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYRLALCYE 371 (552)
T ss_pred -CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHHHHHHHH
Confidence 5788999999997765 6789999999887553 3455566666644
No 340
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=92.10 E-value=3 Score=40.15 Aligned_cols=84 Identities=13% Similarity=0.122 Sum_probs=69.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHH
Q 016973 23 DLYSQAIEISPNSAELFADRAQASIKLQN------------FTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAK 90 (379)
Q Consensus 23 ~~y~~al~~~p~~~~~~~~ra~~~~~lg~------------~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~ 90 (379)
.-|++.+..+|++..+|+.+....-.+-. .+..+..|++|++.+|.+...++.+=.++..+..-+...
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45888899999999999888876655532 456788899999999998888888888888888888888
Q ss_pred HHHHHHHhcCCCChHH
Q 016973 91 VALEKGASLAPGDSRF 106 (379)
Q Consensus 91 ~~~~~a~~l~p~~~~~ 106 (379)
.-+++++..+|++..+
T Consensus 86 ~~we~~l~~~~~~~~L 101 (321)
T PF08424_consen 86 KKWEELLFKNPGSPEL 101 (321)
T ss_pred HHHHHHHHHCCCChHH
Confidence 8999999999987654
No 341
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=92.01 E-value=2.5 Score=43.81 Aligned_cols=93 Identities=18% Similarity=0.173 Sum_probs=67.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHhc
Q 016973 9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP-----SMSKAYWRKATACMKL 83 (379)
Q Consensus 9 g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p-----~~~~a~~~la~~~~~l 83 (379)
++..-.-|-++.....|++.|.+.=-.+....|.|..+....-|++|.+.|++.+.+.+ +....|+.....-+.-
T Consensus 484 ~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg 563 (835)
T KOG2047|consen 484 ADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGG 563 (835)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcC
Confidence 44444556677777778888887767777778888887777778888888888887764 2445566666666666
Q ss_pred cCHHHHHHHHHHHHhcCC
Q 016973 84 EEYETAKVALEKGASLAP 101 (379)
Q Consensus 84 g~y~~A~~~~~~a~~l~p 101 (379)
-..+.|...|++|+...|
T Consensus 564 ~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 564 TKLERARDLFEQALDGCP 581 (835)
T ss_pred CCHHHHHHHHHHHHhcCC
Confidence 677888888888888777
No 342
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=91.83 E-value=0.26 Score=31.54 Aligned_cols=29 Identities=21% Similarity=0.232 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 016973 71 KAYWRKATACMKLEEYETAKVALEKGASL 99 (379)
Q Consensus 71 ~a~~~la~~~~~lg~y~~A~~~~~~a~~l 99 (379)
.+|.++|.+-...++|++|+..|++|+.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46777888888888888888888887765
No 343
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=91.59 E-value=1 Score=44.80 Aligned_cols=58 Identities=14% Similarity=0.163 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRA 62 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~A 62 (379)
.+...|.-+|..|+|.++.-+-.-..++.| ++.+|..+|.|++..++|++|..++...
T Consensus 464 n~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 464 NFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 456678889999999999999888999999 8999999999999999999999988653
No 344
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.59 E-value=1.6 Score=43.65 Aligned_cols=95 Identities=14% Similarity=0.053 Sum_probs=76.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHH
Q 016973 10 KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETA 89 (379)
Q Consensus 10 ~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A 89 (379)
......|+.-.|-+.+..+|+..|..+.....++.++..+|.|+.|++++.-+-.+-..-..+...+-..++.+|+++.|
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence 45677899999999999999999999999999999999999999999998877766555556666666778899999999
Q ss_pred HHHHHHHHhcCCCCh
Q 016973 90 KVALEKGASLAPGDS 104 (379)
Q Consensus 90 ~~~~~~a~~l~p~~~ 104 (379)
.....-.+.-.-.++
T Consensus 377 ~s~a~~~l~~eie~~ 391 (831)
T PRK15180 377 LSTAEMMLSNEIEDE 391 (831)
T ss_pred HHHHHHHhccccCCh
Confidence 876655544333333
No 345
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.50 E-value=3.5 Score=36.59 Aligned_cols=59 Identities=19% Similarity=0.164 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 016973 38 LFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRKATACMKLEEYETAKVALEKG 96 (379)
Q Consensus 38 ~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~---~~~a~~~la~~~~~lg~y~~A~~~~~~a 96 (379)
..+.+|..+...+++++|+..+..++..-.+ -.-+-+|+|.+++.+|++++|+..+...
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~ 152 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTI 152 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc
Confidence 3456788888899999999999988755432 2567899999999999999999887653
No 346
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=91.46 E-value=1.9 Score=42.21 Aligned_cols=99 Identities=13% Similarity=0.099 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----CCHHHHHHH
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPN-SAE-LFADRAQASIKLQNFTEAVADANRAIELEP-----SMSKAYWRK 76 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~-~~~-~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p-----~~~~a~~~l 76 (379)
+++.....+.++|-+..|++...-.+.++|. ++. +++.+-...++.++|+=-+..++....... ..+..-|.+
T Consensus 105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~ 184 (360)
T PF04910_consen 105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSI 184 (360)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHH
Confidence 4667778899999999999999999999998 653 455555556677888777777766544211 245678899
Q ss_pred HHHHHhccCH---------------HHHHHHHHHHHhcCCC
Q 016973 77 ATACMKLEEY---------------ETAKVALEKGASLAPG 102 (379)
Q Consensus 77 a~~~~~lg~y---------------~~A~~~~~~a~~l~p~ 102 (379)
+.+++.+++- +.|...+++|+...|.
T Consensus 185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 9999999999 8999999999988774
No 347
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.40 E-value=1.9 Score=40.03 Aligned_cols=90 Identities=9% Similarity=0.077 Sum_probs=78.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHH
Q 016973 16 DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFT-EAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALE 94 (379)
Q Consensus 16 g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~-eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~ 94 (379)
.+..+-++.+++.++.+|.|...|..|-.+...+|+.. .-+..+..++..+..+..+|-.+-=++...+.|+.-+.+..
T Consensus 92 ~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~ 171 (318)
T KOG0530|consen 92 SDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYAD 171 (318)
T ss_pred HHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHH
Confidence 34667788999999999999999999999999999988 88999999999999999999999999988899999988888
Q ss_pred HHHhcCCCChH
Q 016973 95 KGASLAPGDSR 105 (379)
Q Consensus 95 ~a~~l~p~~~~ 105 (379)
+.++.+--|..
T Consensus 172 ~Lle~Di~NNS 182 (318)
T KOG0530|consen 172 ELLEEDIRNNS 182 (318)
T ss_pred HHHHHhhhccc
Confidence 88887654443
No 348
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=91.30 E-value=3.8 Score=33.43 Aligned_cols=80 Identities=15% Similarity=0.120 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHhccCHHHHHHHHHHHHhc---
Q 016973 37 ELFADRAQASIKL--QNFTEAVADANRAIELEPS------------MSKAYWRKATACMKLEEYETAKVALEKGASL--- 99 (379)
Q Consensus 37 ~~~~~ra~~~~~l--g~~~eAl~~~~~Al~l~p~------------~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l--- 99 (379)
.+|..++....++ |.|++|..-|.+|..+... ++-+|--|+.++..+|+|++++..-.+++..
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR 87 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR 87 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence 3455555554444 7899999999999988643 3456777888999999999988877777654
Q ss_pred --CCCChHHHHHHHHHHHH
Q 016973 100 --APGDSRFTNLIKECEER 116 (379)
Q Consensus 100 --~p~~~~~~~~l~~~~~~ 116 (379)
.-+...-+.|+..+-.+
T Consensus 88 RGEL~qdeGklWIaaVfsr 106 (144)
T PF12968_consen 88 RGELHQDEGKLWIAAVFSR 106 (144)
T ss_dssp H--TTSTHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHHHHH
Confidence 22345567787766443
No 349
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.21 E-value=3.2 Score=39.07 Aligned_cols=64 Identities=22% Similarity=0.177 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 016973 36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASL 99 (379)
Q Consensus 36 ~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l 99 (379)
..++..++..+...++++.++..+.+.+.++|.+-.+|.++-.+|+..|+...|+..|.+...+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4567778888888899999999999999999999999999999999999999999999988764
No 350
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=91.17 E-value=4.8 Score=39.51 Aligned_cols=97 Identities=11% Similarity=-0.047 Sum_probs=71.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---ccCHHHHHHHHHHHH-HhCCCCHHHHHHHHH
Q 016973 7 KKAKEAFIDDYFELAYDLYSQAIEI----SPNSAELFADRAQASIK---LQNFTEAVADANRAI-ELEPSMSKAYWRKAT 78 (379)
Q Consensus 7 ~~g~~~~~~g~y~~Al~~y~~al~~----~p~~~~~~~~ra~~~~~---lg~~~eAl~~~~~Al-~l~p~~~~a~~~la~ 78 (379)
+.=..|-...+|+.=+.+.+..-.+ -++.+...+.+|.++.+ .|+.++|++.+..++ ...+.+++.+..+|.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3334566667777777776655444 33456667788888888 899999999999854 445678899999998
Q ss_pred HHHh---------ccCHHHHHHHHHHHHhcCCCC
Q 016973 79 ACMK---------LEEYETAKVALEKGASLAPGD 103 (379)
Q Consensus 79 ~~~~---------lg~y~~A~~~~~~a~~l~p~~ 103 (379)
+|.. ...+++|+.+|.++.+++|+.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~ 259 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY 259 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence 8854 234789999999999999754
No 351
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.88 E-value=2.7 Score=35.58 Aligned_cols=82 Identities=13% Similarity=0.071 Sum_probs=69.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 016973 39 FADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (379)
Q Consensus 39 ~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~ 118 (379)
+.....+....++++++...+...--+.|+.+.....-|..+...|+|.+|+..|+....-.+..+-.+..++.|...++
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~ 92 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG 92 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence 44444555568899999998888888999999999999999999999999999999998888888888888888877766
Q ss_pred hh
Q 016973 119 EE 120 (379)
Q Consensus 119 ~~ 120 (379)
..
T Consensus 93 Dp 94 (153)
T TIGR02561 93 DA 94 (153)
T ss_pred Ch
Confidence 64
No 352
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=90.78 E-value=3.1 Score=40.76 Aligned_cols=91 Identities=19% Similarity=0.214 Sum_probs=70.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 016973 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRA--QASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (379)
Q Consensus 6 ~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra--~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l 83 (379)
.-.+...+-.|+|+.|.+.|+-.+. +|.- ..+-.|| .....+|.++-|+.+..+|....|..+-++.-.-...+..
T Consensus 124 lLeAQaal~eG~~~~Ar~kfeAMl~-dPEt-RllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~ 201 (531)
T COG3898 124 LLEAQAALLEGDYEDARKKFEAMLD-DPET-RLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAA 201 (531)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHhc-ChHH-HHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhc
Confidence 3457788899999999999976554 4442 2222333 3345679999999999999999999998888888889999
Q ss_pred cCHHHHHHHHHHHHh
Q 016973 84 EEYETAKVALEKGAS 98 (379)
Q Consensus 84 g~y~~A~~~~~~a~~ 98 (379)
|+++.|+........
T Consensus 202 gdWd~AlkLvd~~~~ 216 (531)
T COG3898 202 GDWDGALKLVDAQRA 216 (531)
T ss_pred CChHHHHHHHHHHHH
Confidence 999999998875544
No 353
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=90.45 E-value=0.8 Score=28.90 Aligned_cols=20 Identities=15% Similarity=0.109 Sum_probs=9.3
Q ss_pred HHHHHHHHHhccCHHHHHHH
Q 016973 73 YWRKATACMKLEEYETAKVA 92 (379)
Q Consensus 73 ~~~la~~~~~lg~y~~A~~~ 92 (379)
++.+|-.++..|+|++|+..
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 44444444555555555544
No 354
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=90.40 E-value=1.2 Score=41.30 Aligned_cols=59 Identities=15% Similarity=0.010 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 016973 55 AVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (379)
Q Consensus 55 Al~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~ 113 (379)
|+.+|.+|+.+.|.++..|..+|.++...|+.=.|+.+|-+++...--.+.+...+..+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~l 59 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKL 59 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 45666777777777777777777777667777777776666665443334444444333
No 355
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=90.34 E-value=1.8 Score=37.70 Aligned_cols=71 Identities=20% Similarity=0.247 Sum_probs=54.9
Q ss_pred ccCC-eEEEEEEeCCCCCCc-eEEEEeecEEEEEEEcCCCceeeeccccccccccCcceEEEeCcEEEEEEeecCC
Q 016973 185 QKPE-EVVVTVFAKGIPAKN-VTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP 258 (379)
Q Consensus 185 Qt~~-~V~i~i~~k~~~~~~-v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~ 258 (379)
+.++ .+.|.--++|+..++ +.|.+..+...|.+...+ .|.-.|.|-.++ ++..+.++.+.-+||.|.+.+.
T Consensus 98 e~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~~~--~~~krv~L~~~~-~e~~~~t~nNgILEIri~~~~~ 170 (177)
T PF05455_consen 98 ERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRVGE--KYLKRVALPWPD-PEITSATFNNGILEIRIRRTEE 170 (177)
T ss_pred ecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEecCC--ceEeeEecCCCc-cceeeEEEeCceEEEEEeecCC
Confidence 4455 688888999998888 899998776666665332 366678888884 7877899999999999999764
No 356
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=90.32 E-value=4.8 Score=39.57 Aligned_cols=122 Identities=8% Similarity=0.005 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCCHHHH
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEI-----SPNS-AELFADRAQASIKLQNFTEAVADANRAIEL----EPSMSKAY 73 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~-----~p~~-~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l----~p~~~~a~ 73 (379)
.++-....+-..++...-...+...+.. +... +.+...+=.+|+..+.|+.|-....++.-- +...+..+
T Consensus 171 ~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~ 250 (493)
T KOG2581|consen 171 LYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYL 250 (493)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHH
Confidence 3444455555556654444444433332 1111 344555667788888899988877776511 22457888
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHhhhcccC
Q 016973 74 WRKATACMKLEEYETAKVALEKGASLAPGDSR--FTNLIKECEERIAEETGELQ 125 (379)
Q Consensus 74 ~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~--~~~~l~~~~~~l~~~~~~~~ 125 (379)
|.+|.+..-.++|..|..+|-+|++..|++.. +.+...++.--+.-...++|
T Consensus 251 yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll~geiP 304 (493)
T KOG2581|consen 251 YYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELLLGEIP 304 (493)
T ss_pred HHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHcCCCc
Confidence 99999999999999999999999999998543 33333333333344444444
No 357
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.19 E-value=0.39 Score=27.71 Aligned_cols=24 Identities=21% Similarity=0.141 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHH
Q 016973 71 KAYWRKATACMKLEEYETAKVALE 94 (379)
Q Consensus 71 ~a~~~la~~~~~lg~y~~A~~~~~ 94 (379)
.+++.+|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 355666666666666666666554
No 358
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.81 E-value=4.1 Score=40.11 Aligned_cols=105 Identities=9% Similarity=0.010 Sum_probs=81.4
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HhccC---H
Q 016973 13 FIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQN--FTEAVADANRAIELEPSMSKAYWRKATAC-MKLEE---Y 86 (379)
Q Consensus 13 ~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~--~~eAl~~~~~Al~l~p~~~~a~~~la~~~-~~lg~---y 86 (379)
.+..-+++-+.+...+|..+|.+..+|+.|..++.+.+. +..-++.+.++++++|.+..+|-.+-.+. ..... .
T Consensus 86 ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~ 165 (421)
T KOG0529|consen 86 EKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLE 165 (421)
T ss_pred HHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccc
Confidence 344466778888999999999999999999999988764 68889999999999999888775444443 33333 5
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 016973 87 ETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (379)
Q Consensus 87 ~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l 117 (379)
.+-+.+..+++.-++.|-.++.....+...+
T Consensus 166 ~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l 196 (421)
T KOG0529|consen 166 KEELEFTTKLINDNFSNYSAWHYRSLLLSTL 196 (421)
T ss_pred hhHHHHHHHHHhccchhhhHHHHHHHHHHHh
Confidence 6677788888888888888877776664433
No 359
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=89.80 E-value=0.66 Score=29.68 Aligned_cols=28 Identities=25% Similarity=0.504 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 016973 38 LFADRAQASIKLQNFTEAVADANRAIEL 65 (379)
Q Consensus 38 ~~~~ra~~~~~lg~~~eAl~~~~~Al~l 65 (379)
.|..+|.+-+..++|.+|+.+|.+++.+
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3445555555555555555555555544
No 360
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.70 E-value=7.2 Score=40.04 Aligned_cols=94 Identities=18% Similarity=0.087 Sum_probs=70.0
Q ss_pred cCCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CC----------
Q 016973 15 DDYFELAYDLYSQAIEI------------SPNSAELFADRAQASIKLQNFTEAVADANRAIEL-----EP---------- 67 (379)
Q Consensus 15 ~g~y~~Al~~y~~al~~------------~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l-----~p---------- 67 (379)
...|++|...|.-|... +|-+..-++..|.+....|+.+-|.....++|-. +|
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 45677888877777665 3445777888999999999988777777776622 22
Q ss_pred ---------CCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-ChHHHH
Q 016973 68 ---------SMSKAYWRKATACMKLEEYETAKVALEKGASLAPG-DSRFTN 108 (379)
Q Consensus 68 ---------~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~-~~~~~~ 108 (379)
.+..++||.-..+.+.|++..|.++++-.+.++|. |+-...
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l 381 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGIL 381 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHH
Confidence 13556677777788899999999999999999998 665433
No 361
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=89.43 E-value=1.3 Score=27.88 Aligned_cols=21 Identities=14% Similarity=0.045 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHccCHHHHHHH
Q 016973 38 LFADRAQASIKLQNFTEAVAD 58 (379)
Q Consensus 38 ~~~~ra~~~~~lg~~~eAl~~ 58 (379)
.++.+|..++..|++++|+..
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 344455555555555555555
No 362
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.43 E-value=1.3 Score=43.83 Aligned_cols=98 Identities=21% Similarity=0.157 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHHccCH----------HHHHHHH
Q 016973 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEI-----------SPNSAELFADRAQASIKLQNF----------TEAVADA 59 (379)
Q Consensus 1 ~A~~l~~~g~~~~~~g~y~~Al~~y~~al~~-----------~p~~~~~~~~ra~~~~~lg~~----------~eAl~~~ 59 (379)
|+--+...|..++....|.+|+.++-.|-+. -.+.+.+-+..-.||+.+.+. ..|.+.|
T Consensus 162 mglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf 241 (568)
T KOG2561|consen 162 MGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGF 241 (568)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhh
Confidence 4456788999999999999999886555443 334455555677788888653 2333333
Q ss_pred HHHHH--------h-CCCC------HHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 016973 60 NRAIE--------L-EPSM------SKAYWRKATACMKLEEYETAKVALEKGAS 98 (379)
Q Consensus 60 ~~Al~--------l-~p~~------~~a~~~la~~~~~lg~y~~A~~~~~~a~~ 98 (379)
.++.- + .+.. -..++.-|+..|+.|+-++|.++|+.+..
T Consensus 242 ~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 242 ERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred hhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 33321 1 1222 23445569999999999999999998765
No 363
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=89.42 E-value=8.4 Score=39.67 Aligned_cols=113 Identities=15% Similarity=0.034 Sum_probs=92.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Q 016973 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE-PSMSKAYWRKATACMKL 83 (379)
Q Consensus 5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~-p~~~~a~~~la~~~~~l 83 (379)
|..-...-...|++....-+|++++---....++|.+.+.-....|+..-|-..+.++.++. +..+..++.-+......
T Consensus 300 w~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~ 379 (577)
T KOG1258|consen 300 WRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESN 379 (577)
T ss_pred HHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhh
Confidence 44445566789999999999999999888889999999999999999999998888888875 67788888889999999
Q ss_pred cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 016973 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (379)
Q Consensus 84 g~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l 117 (379)
|++..|...|+++..-.|+...+-........++
T Consensus 380 ~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~ 413 (577)
T KOG1258|consen 380 GNFDDAKVILQRIESEYPGLVEVVLRKINWERRK 413 (577)
T ss_pred ccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHh
Confidence 9999999999999988888766443333333333
No 364
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=89.24 E-value=7 Score=38.59 Aligned_cols=62 Identities=15% Similarity=0.159 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHH--HccCHHHHHHHHHHHHH
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA--ELFADRAQASI--KLQNFTEAVADANRAIE 64 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~--~~~~~ra~~~~--~lg~~~eAl~~~~~Al~ 64 (379)
.....++..+|..++|..|...|..++..-|.+. ..+..++.+|. ..-+|.+|...++..+.
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3456788999999999999999999998633333 35555555543 45678889888887664
No 365
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=89.22 E-value=3.5 Score=41.12 Aligned_cols=102 Identities=22% Similarity=0.256 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------HHHH--------HHHHHHH-HHccCH-HHHHHHHHHHHHh
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS--------AELF--------ADRAQAS-IKLQNF-TEAVADANRAIEL 65 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~--------~~~~--------~~ra~~~-~~lg~~-~eAl~~~~~Al~l 65 (379)
..++.|..++..|+|.+|+..|..+|..-|-. .++. |-+|.-. ...... ....++..+.+++
T Consensus 206 ~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~lEL 285 (422)
T PF06957_consen 206 ERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNLEL 285 (422)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHH
Confidence 34668999999999999999999999873321 1111 1122111 111111 1122223333333
Q ss_pred ---------CCCCHHHHHHHHHH-HHhccCHHHHHHHHHHHHhcCCCChH
Q 016973 66 ---------EPSMSKAYWRKATA-CMKLEEYETAKVALEKGASLAPGDSR 105 (379)
Q Consensus 66 ---------~p~~~~a~~~la~~-~~~lg~y~~A~~~~~~a~~l~p~~~~ 105 (379)
.|.+...-+|.|+. .|+.++|..|..+.++.+++.|....
T Consensus 286 AAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~ 335 (422)
T PF06957_consen 286 AAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEV 335 (422)
T ss_dssp HHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHH
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHH
Confidence 23333344455554 37899999999999999999997654
No 366
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=89.17 E-value=4.8 Score=41.35 Aligned_cols=97 Identities=18% Similarity=0.088 Sum_probs=78.8
Q ss_pred HcCCHH-HHHHHHHHHHHhCCCCHHHHHH--HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHH
Q 016973 14 IDDYFE-LAYDLYSQAIEISPNSAELFAD--RAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAK 90 (379)
Q Consensus 14 ~~g~y~-~Al~~y~~al~~~p~~~~~~~~--ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~ 90 (379)
..+..+ .|+..|...+.+++.++.++.. ++..+..++....+...+..++..+|.++.++..+|.++...|..-.+.
T Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~ 121 (620)
T COG3914 42 NAEGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLAL 121 (620)
T ss_pred cccCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHH
Confidence 334444 4777788888888998877544 4888888899989999999999999999999999999998888877777
Q ss_pred HHHHH-HHhcCCCChHHHHHH
Q 016973 91 VALEK-GASLAPGDSRFTNLI 110 (379)
Q Consensus 91 ~~~~~-a~~l~p~~~~~~~~l 110 (379)
..+.+ +....|++..+...+
T Consensus 122 ~~~~~~a~~~~~~~~~~~~~~ 142 (620)
T COG3914 122 ADISEIAEWLSPDNAEFLGHL 142 (620)
T ss_pred HHHHHHHHhcCcchHHHHhhH
Confidence 66665 888999988877766
No 367
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=88.93 E-value=8.5 Score=36.12 Aligned_cols=96 Identities=22% Similarity=0.232 Sum_probs=71.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHcc-CHHHHHHHHHHHHHh----CC---C-------
Q 016973 12 AFIDDYFELAYDLYSQAIEIS----PNS----AELFADRAQASIKLQ-NFTEAVADANRAIEL----EP---S------- 68 (379)
Q Consensus 12 ~~~~g~y~~Al~~y~~al~~~----p~~----~~~~~~ra~~~~~lg-~~~eAl~~~~~Al~l----~p---~------- 68 (379)
+.+.|+++.|..+|.++-... |+. ...+++.|...+..+ ++++|...+++|+.+ .. .
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 567899999999999987764 222 456788888888899 999999999999988 22 1
Q ss_pred CHHHHHHHHHHHHhccCHHH---HHHHHHHHHhcCCCChHHH
Q 016973 69 MSKAYWRKATACMKLEEYET---AKVALEKGASLAPGDSRFT 107 (379)
Q Consensus 69 ~~~a~~~la~~~~~lg~y~~---A~~~~~~a~~l~p~~~~~~ 107 (379)
...++..++.+|...+.++. |...++.+..-.|+.+...
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~ 124 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF 124 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence 24567778889988887764 4444445555567666544
No 368
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=88.87 E-value=3.1 Score=33.40 Aligned_cols=69 Identities=13% Similarity=0.064 Sum_probs=55.1
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhccC-----------HHHHHHHHHHHHhcCCCChHHH
Q 016973 42 RAQASIKLQNFTEAVADANRAIELEPSMS---KAYWRKATACMKLEE-----------YETAKVALEKGASLAPGDSRFT 107 (379)
Q Consensus 42 ra~~~~~lg~~~eAl~~~~~Al~l~p~~~---~a~~~la~~~~~lg~-----------y~~A~~~~~~a~~l~p~~~~~~ 107 (379)
+|.-++..|++-+|++..+..+..+.... ..+..-|.+++.+.. .-.|+++|.++..+.|......
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 57778899999999999999999987655 667777888877654 4568999999999999875544
Q ss_pred HHH
Q 016973 108 NLI 110 (379)
Q Consensus 108 ~~l 110 (379)
..+
T Consensus 82 ~~l 84 (111)
T PF04781_consen 82 FEL 84 (111)
T ss_pred HHH
Confidence 433
No 369
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=88.72 E-value=0.33 Score=46.63 Aligned_cols=80 Identities=19% Similarity=0.074 Sum_probs=67.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCH
Q 016973 7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY 86 (379)
Q Consensus 7 ~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y 86 (379)
+.+.+.+..+.|..|+.....+++.++....++++|+..+..+.++++|++++..+....|.+....-.+...-...++|
T Consensus 280 n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~ 359 (372)
T KOG0546|consen 280 NLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQY 359 (372)
T ss_pred chHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHH
Confidence 35667788889999999999999988889999999999999999999999999999999999887766665554444444
No 370
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.67 E-value=2.8 Score=39.47 Aligned_cols=63 Identities=13% Similarity=0.099 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL 65 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l 65 (379)
..+...+..+...|+++.++..+++.+..+|.+-.+|..+-..|++.|+...|+..|...-.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 356677888999999999999999999999999999999999999999999999998877654
No 371
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=88.66 E-value=15 Score=38.77 Aligned_cols=108 Identities=20% Similarity=0.121 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CH
Q 016973 2 ATDLEKKAKEAF-IDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPS----MS 70 (379)
Q Consensus 2 A~~l~~~g~~~~-~~g~y~~Al~~y~~al~~~p~~------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~----~~ 70 (379)
|...++.|..++ ...+++.|..++.+++.+...+ ..+.+-++.++.+.+... |+..++++++.... .+
T Consensus 59 a~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w 137 (608)
T PF10345_consen 59 ARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAW 137 (608)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhH
Confidence 345677888887 7899999999999998886432 233445678888877777 99999999988655 44
Q ss_pred HHHHHHHHHH--HhccCHHHHHHHHHHHHhcC--CCChHHHHHH
Q 016973 71 KAYWRKATAC--MKLEEYETAKVALEKGASLA--PGDSRFTNLI 110 (379)
Q Consensus 71 ~a~~~la~~~--~~lg~y~~A~~~~~~a~~l~--p~~~~~~~~l 110 (379)
...|++-.+. ...+++..|+..++.+..+. .+++......
T Consensus 138 ~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~ 181 (608)
T PF10345_consen 138 YYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLA 181 (608)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHH
Confidence 4555554332 22379999999999998876 4555544333
No 372
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=88.47 E-value=5.5 Score=36.88 Aligned_cols=62 Identities=18% Similarity=0.118 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973 21 AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (379)
Q Consensus 21 Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~ 82 (379)
|+.+|.+|+.+.|.+...|..+|..+...|+.-.|+-+|-+++....-++.|.-++...+..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999997665567777777777766
No 373
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=88.43 E-value=2.3 Score=42.20 Aligned_cols=97 Identities=11% Similarity=0.104 Sum_probs=65.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 016973 5 LEKKAKEAFIDDYFELAYDLYSQAIEI---------SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR 75 (379)
Q Consensus 5 l~~~g~~~~~~g~y~~Al~~y~~al~~---------~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~ 75 (379)
+....+.+.-.|||..|++.++.. ++ -+.+...++..|-||+.+++|.+|++.|..++..-......+..
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~ 203 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQ 203 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 345567788899999999987542 22 22346778999999999999999999999887443222211222
Q ss_pred HHHHH-HhccCHHHHHHHHHHHHhcCCC
Q 016973 76 KATAC-MKLEEYETAKVALEKGASLAPG 102 (379)
Q Consensus 76 la~~~-~~lg~y~~A~~~~~~a~~l~p~ 102 (379)
+.--+ .-.+..++....+.-|+.+.|.
T Consensus 204 ~~~q~d~i~K~~eqMyaLlAic~~l~p~ 231 (404)
T PF10255_consen 204 RSYQYDQINKKNEQMYALLAICLSLCPQ 231 (404)
T ss_pred ccchhhHHHhHHHHHHHHHHHHHHhCCC
Confidence 22212 2245566777778888888885
No 374
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=88.35 E-value=22 Score=33.21 Aligned_cols=82 Identities=17% Similarity=0.077 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc---------
Q 016973 18 FELAYDLYSQAIEISPNSAELFADRAQASIKL----QNFTEAVADANRAIELEPSMSKAYWRKATACMKLE--------- 84 (379)
Q Consensus 18 y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~l----g~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg--------- 84 (379)
...|+..|.++.... +..+.+++|.+|..- .++.+|...|.+|..... ..++++++ +++..|
T Consensus 171 ~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~ 245 (292)
T COG0790 171 DKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFL 245 (292)
T ss_pred HHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhc
Confidence 347999999998876 678889999888663 489999999999999887 89999999 777666
Q ss_pred ------CHHHHHHHHHHHHhcCCCCh
Q 016973 85 ------EYETAKVALEKGASLAPGDS 104 (379)
Q Consensus 85 ------~y~~A~~~~~~a~~l~p~~~ 104 (379)
+...|...+..+....+...
T Consensus 246 ~~~~~~~~~~a~~~~~~~~~~~~~~~ 271 (292)
T COG0790 246 TAAKEEDKKQALEWLQKACELGFDNA 271 (292)
T ss_pred ccccCCCHHHHHHHHHHHHHcCChhH
Confidence 77888888888777665443
No 375
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=88.18 E-value=7.8 Score=37.26 Aligned_cols=82 Identities=11% Similarity=0.071 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH---HhccCHHHHHHHHH
Q 016973 18 FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC---MKLEEYETAKVALE 94 (379)
Q Consensus 18 y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~---~~lg~y~~A~~~~~ 94 (379)
.+.-+.+|++||+.+|.+..++..+-.+..++..-+...+-+++++..+|.++..|..+-... +..-.+......|.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 456788899999999999999999888888999999999999999999999887776544332 22334667777777
Q ss_pred HHHhc
Q 016973 95 KGASL 99 (379)
Q Consensus 95 ~a~~l 99 (379)
+|++.
T Consensus 127 ~~l~~ 131 (321)
T PF08424_consen 127 KCLRA 131 (321)
T ss_pred HHHHH
Confidence 66653
No 376
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=88.14 E-value=3.1 Score=32.20 Aligned_cols=64 Identities=14% Similarity=0.076 Sum_probs=47.9
Q ss_pred eEEEEEEeCCCCCCceEEEEeecEEEEEEEcCC-----C---ceeeeccccccccccCcceEEEe-CcEEEEE
Q 016973 189 EVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG-----E---EAYHFQPRLFGKIIPAKCRYEVL-STKVEIR 252 (379)
Q Consensus 189 ~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~-----~---~~~~~~~~L~~~I~p~~s~~~v~-~~kiei~ 252 (379)
.-.|.|-+.|..++++.|++..+.|.|+..... | ..|.-.+.|-..|+++..+-.+. ...+.|.
T Consensus 16 ~f~v~ldv~gF~pEDL~Vkv~~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Ie 88 (91)
T cd06480 16 PWKVCVNVHSFKPEELTVKTKDGFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLIIE 88 (91)
T ss_pred cEEEEEEeCCCCHHHcEEEEECCEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCeEEEE
Confidence 345778899999999999999999999875321 1 13555678889999998888887 4455554
No 377
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=88.01 E-value=2.1 Score=31.83 Aligned_cols=30 Identities=30% Similarity=0.220 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~ 31 (379)
|..+..+|..+-..|+|.+|+.+|+++++.
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 556677777777788888777777776654
No 378
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=87.88 E-value=14 Score=36.37 Aligned_cols=93 Identities=18% Similarity=0.120 Sum_probs=68.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 016973 11 EAFIDDYFELAYDLYSQAIEISPNS--------AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (379)
Q Consensus 11 ~~~~~g~y~~Al~~y~~al~~~p~~--------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~ 82 (379)
.....|+++.||++.+......-.. ..++..++..+.. -+...|..+...++++.|+...+-.--+.+|++
T Consensus 197 ~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld-adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~ 275 (531)
T COG3898 197 ARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD-ADPASARDDALEANKLAPDLVPAAVVAARALFR 275 (531)
T ss_pred HHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhhcCCccchHHHHHHHHHHh
Confidence 4567888888888887766542111 1222222222221 357788899999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhcCCCCh
Q 016973 83 LEEYETAKVALEKGASLAPGDS 104 (379)
Q Consensus 83 lg~y~~A~~~~~~a~~l~p~~~ 104 (379)
.|+..++-..++.+-+..|+-.
T Consensus 276 d~~~rKg~~ilE~aWK~ePHP~ 297 (531)
T COG3898 276 DGNLRKGSKILETAWKAEPHPD 297 (531)
T ss_pred ccchhhhhhHHHHHHhcCCChH
Confidence 9999999999999999988643
No 379
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=87.75 E-value=1 Score=41.04 Aligned_cols=108 Identities=19% Similarity=0.131 Sum_probs=67.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhC---CCC---------HHHHHHHHHHHHHccC-HHHHH-HHHHHHHHh--CCCC--HHHH
Q 016973 12 AFIDDYFELAYDLYSQAIEIS---PNS---------AELFADRAQASIKLQN-FTEAV-ADANRAIEL--EPSM--SKAY 73 (379)
Q Consensus 12 ~~~~g~y~~Al~~y~~al~~~---p~~---------~~~~~~ra~~~~~lg~-~~eAl-~~~~~Al~l--~p~~--~~a~ 73 (379)
+|..|+|+.|+++..-||+.+ |.+ ++-...-|...+..|+ ++-+. ..+.....- -|+. ++.|
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~ 172 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLY 172 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHH
Confidence 467899999999999999984 322 2223334444445554 22221 112222110 1333 3344
Q ss_pred HHHHHHHH---------hccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973 74 WRKATACM---------KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (379)
Q Consensus 74 ~~la~~~~---------~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (379)
-..|..+. ..++...|+.+|++|+.++|+ ..++..+.++..+|+..
T Consensus 173 K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k-~GVK~~i~~l~~~lr~~ 227 (230)
T PHA02537 173 KAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK-CGVKKDIERLERRLKAL 227 (230)
T ss_pred HHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHhhc
Confidence 44566563 456888999999999999975 55778888888888754
No 380
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.65 E-value=19 Score=31.63 Aligned_cols=99 Identities=11% Similarity=-0.005 Sum_probs=48.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHH
Q 016973 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKLQNFTEAVADANRAI-ELEPSMSKAYWRKATAC 80 (379)
Q Consensus 6 ~~~g~~~~~~g~y~~Al~~y~~al~~~p~~----~~~~~~ra~~~~~lg~~~eAl~~~~~Al-~l~p~~~~a~~~la~~~ 80 (379)
++.|......|+-+.|+..|+++-...+-- -.+.++-|.++...|.|+.-..-.+..- .-+|--..+.--||.+-
T Consensus 98 mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa 177 (221)
T COG4649 98 MRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAA 177 (221)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHH
Confidence 344444555555555555555544332211 1223333333444444444322221110 00122233455578888
Q ss_pred HhccCHHHHHHHHHHHHhcCCCChH
Q 016973 81 MKLEEYETAKVALEKGASLAPGDSR 105 (379)
Q Consensus 81 ~~lg~y~~A~~~~~~a~~l~p~~~~ 105 (379)
++.|+|..|...|.+... +-..+.
T Consensus 178 ~kagd~a~A~~~F~qia~-Da~apr 201 (221)
T COG4649 178 YKAGDFAKAKSWFVQIAN-DAQAPR 201 (221)
T ss_pred HhccchHHHHHHHHHHHc-cccCcH
Confidence 889999999998887765 444443
No 381
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=87.64 E-value=12 Score=36.85 Aligned_cols=110 Identities=14% Similarity=0.113 Sum_probs=83.7
Q ss_pred HHHHHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------------cCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 016973 10 KEAFIDDYFE-LAYDLYSQAIEISPNSAELFADRAQASIKL------------QNFTEAVADANRAIELEPSMSKAYWRK 76 (379)
Q Consensus 10 ~~~~~~g~y~-~Al~~y~~al~~~p~~~~~~~~ra~~~~~l------------g~~~eAl~~~~~Al~l~p~~~~a~~~l 76 (379)
...-+.|.|+ +++.+=.+.+..+|....+|..|=.++... .-+++-+.....|++.+|...-+|+.+
T Consensus 36 ~~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR 115 (421)
T KOG0529|consen 36 QKKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHR 115 (421)
T ss_pred HHHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHH
Confidence 3444566664 677777888888998877776655554332 246677888889999999999999999
Q ss_pred HHHHHhccC--HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973 77 ATACMKLEE--YETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (379)
Q Consensus 77 a~~~~~lg~--y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~ 119 (379)
.-++.+.+. +..-+..+.++++.+|.+-..+....-+......
T Consensus 116 ~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~ 160 (421)
T KOG0529|consen 116 KWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAER 160 (421)
T ss_pred HHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhc
Confidence 999987765 5788889999999999998877776666554444
No 382
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=87.39 E-value=4.7 Score=44.37 Aligned_cols=89 Identities=13% Similarity=0.080 Sum_probs=64.3
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc-----CHHHHHH
Q 016973 17 YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE-----EYETAKV 91 (379)
Q Consensus 17 ~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg-----~y~~A~~ 91 (379)
.+.+|+..|++... .|..+.=|+..|.+|..+|+|++-++++..|++.-|+.+..-+.+-.+.+++. +...|+.
T Consensus 534 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (932)
T PRK13184 534 DFTQALSEFSYLHG-GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALV 612 (932)
T ss_pred HHHHHHHHHHHhcC-CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777765433 34556678999999999999999999999999999887665444444444432 2345777
Q ss_pred HHHHHHhcCCCChHH
Q 016973 92 ALEKGASLAPGDSRF 106 (379)
Q Consensus 92 ~~~~a~~l~p~~~~~ 106 (379)
++--++...|.....
T Consensus 613 ~~~~~~~~~~~~~~~ 627 (932)
T PRK13184 613 FMLLALWIAPEKISS 627 (932)
T ss_pred HHHHHHHhCcccccc
Confidence 777888888876544
No 383
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.92 E-value=6.4 Score=34.39 Aligned_cols=66 Identities=18% Similarity=0.178 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 016973 36 AELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRKATACMKLEEYETAKVALEKGASLAP 101 (379)
Q Consensus 36 ~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~---~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p 101 (379)
-.++..+|..|.+.|++++|++.|.++...... ....++++-.+.+..+++.....++.++..+-.
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~ 104 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIE 104 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 367889999999999999999999998877643 456788888899999999999999999887643
No 384
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=86.84 E-value=4.9 Score=40.60 Aligned_cols=62 Identities=15% Similarity=0.216 Sum_probs=53.3
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHHH
Q 016973 13 FIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQN-FTEAVADANRAIELEPSMSKAYW 74 (379)
Q Consensus 13 ~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~-~~eAl~~~~~Al~l~p~~~~a~~ 74 (379)
-+.+.|.+--..|.++|..+|+++++|..-|.-.+..+. .+.|...+.++++.+|+.+..|.
T Consensus 116 kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~ 178 (568)
T KOG2396|consen 116 KKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWK 178 (568)
T ss_pred HHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHH
Confidence 334448899999999999999999999998888887776 99999999999999999876553
No 385
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=85.81 E-value=2.1 Score=47.66 Aligned_cols=99 Identities=23% Similarity=0.206 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI--------SPNSAELFADRAQASIKLQNFTEAVADANRAIEL-------- 65 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~--------~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l-------- 65 (379)
+..+...+..+.+.+++++|+..-.++.-+ .|+....|.+++...+..++...|+..+.++..+
T Consensus 973 ~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~ 1052 (1236)
T KOG1839|consen 973 ASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGED 1052 (1236)
T ss_pred HHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCC
Confidence 567788899999999999999986666554 3444678899999999999999999999999877
Q ss_pred CCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q 016973 66 EPSMSKAYWRKATACMKLEEYETAKVALEKGASLA 100 (379)
Q Consensus 66 ~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~ 100 (379)
+|.-.....+++.++..+++++.|+.+++.|+...
T Consensus 1053 hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1053 HPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred CCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 45666677888999999999999999999998853
No 386
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=85.80 E-value=5.4 Score=36.14 Aligned_cols=59 Identities=22% Similarity=0.164 Sum_probs=31.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 016973 10 KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS 68 (379)
Q Consensus 10 ~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~ 68 (379)
..+++.+..++||.....-++..|.+......+-..|.-.|+|++|+..++-+-++.|+
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~ 67 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ 67 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc
Confidence 34555555555555555555555555544444444455555555555555555555554
No 387
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.26 E-value=16 Score=36.97 Aligned_cols=116 Identities=15% Similarity=0.036 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCC---C---
Q 016973 2 ATDLEKKAKEAFIDD--YFELAYDLYSQAIEISPNS---AELFADRAQASIK-LQNFTEAVADANRAIELEPS---M--- 69 (379)
Q Consensus 2 A~~l~~~g~~~~~~g--~y~~Al~~y~~al~~~p~~---~~~~~~ra~~~~~-lg~~~eAl~~~~~Al~l~p~---~--- 69 (379)
+..+...|..+-..| +...+|++++..+...+.. +.....+|..++. .++++.|...+++|..+... +
T Consensus 7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydv 86 (629)
T KOG2300|consen 7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDV 86 (629)
T ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhh
Confidence 456677777777788 7889999999888876654 3344556655544 58899999999999988643 3
Q ss_pred -HHHHHHHHHHHHhcc-CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973 70 -SKAYWRKATACMKLE-EYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (379)
Q Consensus 70 -~~a~~~la~~~~~lg-~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (379)
..++-.++.+|.+.. .+..|...+++++++..+.+ .|--++...|.+.
T Consensus 87 Kf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p---~wsckllfQLaql 136 (629)
T KOG2300|consen 87 KFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVP---YWSCKLLFQLAQL 136 (629)
T ss_pred hhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCc---hhhHHHHHHHHHH
Confidence 235566788887777 78899999999999988877 4444544444443
No 388
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=84.98 E-value=1.4 Score=49.00 Aligned_cols=98 Identities=26% Similarity=0.363 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHH------HHHHHHH-hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------
Q 016973 2 ATDLEKKAKEAFIDDYFELAYD------LYSQAIE-ISPNSAELFADRAQASIKLQNFTEAVADANRAIELE-------- 66 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~------~y~~al~-~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~-------- 66 (379)
|..+.+.|......|.+.+|.+ +++.... +.|.....|..++..+.+++++++|+....+|.-+.
T Consensus 932 a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds 1011 (1236)
T KOG1839|consen 932 AKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDS 1011 (1236)
T ss_pred hhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCC
Confidence 4567888999999999998888 4443222 366778889999999999999999999999888663
Q ss_pred CCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 016973 67 PSMSKAYWRKATACMKLEEYETAKVALEKGASL 99 (379)
Q Consensus 67 p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l 99 (379)
|+....|-.++...+..+....|+..+.++..+
T Consensus 1012 ~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 1012 PNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred HHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence 456788999999999999999999988888776
No 389
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=84.75 E-value=6.6 Score=36.22 Aligned_cols=76 Identities=17% Similarity=0.193 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHhccCHH
Q 016973 20 LAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEP------SMSKAYWRKATACMKLEEYE 87 (379)
Q Consensus 20 ~Al~~y~~al~~~p~~------~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p------~~~~a~~~la~~~~~lg~y~ 87 (379)
..|+++.+|+...... ..+...+|.-|+.+|+|++|+..|+.+...-. -....+..+..|++++|+.+
T Consensus 156 ~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~ 235 (247)
T PF11817_consen 156 LIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVE 235 (247)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHH
Confidence 4456666666653321 33455677777777777777777777754422 13456666777777777777
Q ss_pred HHHHHHHH
Q 016973 88 TAKVALEK 95 (379)
Q Consensus 88 ~A~~~~~~ 95 (379)
..+...-+
T Consensus 236 ~~l~~~le 243 (247)
T PF11817_consen 236 DYLTTSLE 243 (247)
T ss_pred HHHHHHHH
Confidence 76655433
No 390
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=84.64 E-value=1.7 Score=41.22 Aligned_cols=70 Identities=9% Similarity=0.172 Sum_probs=56.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 016973 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFAD-RAQASIKLQNFTEAVADANRAIELEPSMSKAYWR 75 (379)
Q Consensus 6 ~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~-ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~ 75 (379)
..-++-..+.|-|.+--..|.+++..+|.++++|.. -+.-+.-.+++..|...+.++++++|..+..|+.
T Consensus 111 ~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 111 SQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 334455566778888889999999999999998876 4445667799999999999999999988776643
No 391
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=84.63 E-value=1.2 Score=25.53 Aligned_cols=23 Identities=17% Similarity=-0.100 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHH
Q 016973 38 LFADRAQASIKLQNFTEAVADAN 60 (379)
Q Consensus 38 ~~~~ra~~~~~lg~~~eAl~~~~ 60 (379)
+++.+|.++..+|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45566666666666666665543
No 392
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=84.50 E-value=2.5 Score=31.58 Aligned_cols=30 Identities=27% Similarity=0.350 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~ 31 (379)
|..+..+|..+-..|+|++|+.+|.++|..
T Consensus 6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 6 AKEVLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 456778888888888888888888887765
No 393
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.31 E-value=7.3 Score=38.36 Aligned_cols=94 Identities=16% Similarity=0.124 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----C----CCHHH
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPN---SAELFADRAQASIKLQNFTEAVADANRAIELE----P----SMSKA 72 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~---~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~----p----~~~~a 72 (379)
.+-..|.-|+..|+++.|+++|.++-..-.+ -...+.+.-.+-+-+|+|..-+....+|...- . -.++.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 3556788899999999999999996555222 24566677777777899988888877777651 1 13456
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHH
Q 016973 73 YWRKATACMKLEEYETAKVALEKGA 97 (379)
Q Consensus 73 ~~~la~~~~~lg~y~~A~~~~~~a~ 97 (379)
...-|.+.+.+++|..|..+|-.+.
T Consensus 232 ~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 232 KCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 7778889999999999998886553
No 394
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.21 E-value=21 Score=36.15 Aligned_cols=91 Identities=13% Similarity=0.115 Sum_probs=68.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C--HHHHHHHHHHHHHccCHHHHHHHHHHHHH-hCCC----------CHH
Q 016973 6 EKKAKEAFIDDYFELAYDLYSQAIEISPN-S--AELFADRAQASIKLQNFTEAVADANRAIE-LEPS----------MSK 71 (379)
Q Consensus 6 ~~~g~~~~~~g~y~~Al~~y~~al~~~p~-~--~~~~~~ra~~~~~lg~~~eAl~~~~~Al~-l~p~----------~~~ 71 (379)
+-.|.-...-+.|+.|...|..|++.-.. + +.+-.++|..|...++-+. +.+++. +.|. ...
T Consensus 371 ~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed----~y~~ld~i~p~nt~s~ssq~l~a~ 446 (629)
T KOG2300|consen 371 MLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAED----LYKALDLIGPLNTNSLSSQRLEAS 446 (629)
T ss_pred HHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHH----HHHHHHhcCCCCCCcchHHHHHHH
Confidence 44677777788899999999999987433 3 3445678999998776553 333332 3443 256
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q 016973 72 AYWRKATACMKLEEYETAKVALEKGASLA 100 (379)
Q Consensus 72 a~~~la~~~~~lg~y~~A~~~~~~a~~l~ 100 (379)
++|..|...|..+++.+|...+++.++..
T Consensus 447 ~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 447 ILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 78889999999999999999999999987
No 395
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=84.06 E-value=2.8 Score=42.07 Aligned_cols=95 Identities=17% Similarity=0.124 Sum_probs=74.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHH
Q 016973 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYE 87 (379)
Q Consensus 8 ~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~ 87 (379)
.+...-..|+|+.|+..+.-+-..-..-..+...|-..+.++|++++|+..+...+.-.-..+++..--|.....+|-++
T Consensus 329 ~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d 408 (831)
T PRK15180 329 RSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFD 408 (831)
T ss_pred HHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHH
Confidence 46677788999999999876655544444455556667889999999999888877666667777777777788899999
Q ss_pred HHHHHHHHHHhcCCC
Q 016973 88 TAKVALEKGASLAPG 102 (379)
Q Consensus 88 ~A~~~~~~a~~l~p~ 102 (379)
+|.-++++.+.++|.
T Consensus 409 ~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 409 KSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHHHhccCCh
Confidence 999999999998874
No 396
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=83.98 E-value=1.7 Score=43.16 Aligned_cols=60 Identities=13% Similarity=0.165 Sum_probs=47.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 016973 39 FADRAQASIKLQNFTEAVADANRAIELE---------PSMSKAYWRKATACMKLEEYETAKVALEKGASL 99 (379)
Q Consensus 39 ~~~ra~~~~~lg~~~eAl~~~~~Al~l~---------p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l 99 (379)
+..+..++..+|+|..|++.++.. .++ +.....+|..|.+|+.+++|.+|+..|..++-.
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777899999999887642 222 235678899999999999999999999987653
No 397
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=83.97 E-value=7.7 Score=36.63 Aligned_cols=72 Identities=21% Similarity=0.174 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 016973 36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIK 111 (379)
Q Consensus 36 ~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~ 111 (379)
.+.-+.-+.-....|++.+|...|..++...|.+..+.+.++.||...|+.+.|...|.. .|.+.....+..
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~----lP~~~~~~~~~~ 205 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA----LPLQAQDKAAHG 205 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh----CcccchhhHHHH
Confidence 344566777788899999999999999999999999999999999999999999876654 354444444444
No 398
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=83.84 E-value=4.6 Score=43.20 Aligned_cols=79 Identities=22% Similarity=0.132 Sum_probs=49.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHH
Q 016973 9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYET 88 (379)
Q Consensus 9 g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~ 88 (379)
|..+...|-.++|+.+|.++-+.+ + +-..|...|++++|++.++.-=+++ ....||+.|..+...++.+.
T Consensus 807 AvLAieLgMlEeA~~lYr~ckR~D-----L---lNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di~~ 876 (1416)
T KOG3617|consen 807 AVLAIELGMLEEALILYRQCKRYD-----L---LNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDIEA 876 (1416)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHH-----H---HHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccHHH
Confidence 344455555666666665553322 1 2224555566666666554332222 35679999999999999999
Q ss_pred HHHHHHHHH
Q 016973 89 AKVALEKGA 97 (379)
Q Consensus 89 A~~~~~~a~ 97 (379)
|+++|+++-
T Consensus 877 AleyyEK~~ 885 (1416)
T KOG3617|consen 877 ALEYYEKAG 885 (1416)
T ss_pred HHHHHHhcC
Confidence 999999763
No 399
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=83.55 E-value=8 Score=37.21 Aligned_cols=96 Identities=16% Similarity=0.105 Sum_probs=67.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCHHHHHHHH
Q 016973 16 DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL--EPSMSKAYWRKATACMKLEEYETAKVAL 93 (379)
Q Consensus 16 g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l--~p~~~~a~~~la~~~~~lg~y~~A~~~~ 93 (379)
-+|..=..+|+-.....|. +..-+||+.+.-+..=.+.++...+..... -..+..+|--+|..+.++|+-.+|...|
T Consensus 310 tDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~ay 388 (415)
T COG4941 310 TDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAY 388 (415)
T ss_pred CChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHH
Confidence 3455545556555555554 556678888887776667777666555443 2245567778999999999999999999
Q ss_pred HHHHhcCCCChHHHHHHHH
Q 016973 94 EKGASLAPGDSRFTNLIKE 112 (379)
Q Consensus 94 ~~a~~l~p~~~~~~~~l~~ 112 (379)
.+++.+.++..+-...+.+
T Consensus 389 drAi~La~~~aer~~l~~r 407 (415)
T COG4941 389 DRAIALARNAAERAFLRQR 407 (415)
T ss_pred HHHHHhcCChHHHHHHHHH
Confidence 9999999987764433333
No 400
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=83.48 E-value=5.5 Score=36.78 Aligned_cols=59 Identities=14% Similarity=0.120 Sum_probs=47.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 016973 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAI 63 (379)
Q Consensus 5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~------~~~~~~ra~~~~~lg~~~eAl~~~~~Al 63 (379)
....|..++..|+|+.|+.+|+.++...-.. ..++..+..|+.++|+.+..+...-+.+
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 4678999999999999999999997663322 5667888999999999998887665543
No 401
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=83.26 E-value=25 Score=33.96 Aligned_cols=91 Identities=16% Similarity=0.081 Sum_probs=65.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---------------------
Q 016973 9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP--------------------- 67 (379)
Q Consensus 9 g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p--------------------- 67 (379)
-..+.+..+..+-|+.-..||++||..+.+|..+|.- ......+|.+.+.+|++...
T Consensus 191 MQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~r 268 (556)
T KOG3807|consen 191 MQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLR 268 (556)
T ss_pred HHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhh
Confidence 3456677888888999999999999998888877643 23345556666665554321
Q ss_pred --CCHH--HHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 016973 68 --SMSK--AYWRKATACMKLEEYETAKVALEKGASLAP 101 (379)
Q Consensus 68 --~~~~--a~~~la~~~~~lg~y~~A~~~~~~a~~l~p 101 (379)
.+.. .-.|+|.|..++|+..+|+..|+...+-.|
T Consensus 269 RDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 269 RDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred cccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 1222 235789999999999999999998877666
No 402
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=83.21 E-value=5.9 Score=29.49 Aligned_cols=47 Identities=17% Similarity=-0.019 Sum_probs=23.4
Q ss_pred HHHHHHHHHhccCHHHHH-------HHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973 73 YWRKATACMKLEEYETAK-------VALEKGASLAPGDSRFTNLIKECEERIAE 119 (379)
Q Consensus 73 ~~~la~~~~~lg~y~~A~-------~~~~~a~~l~p~~~~~~~~l~~~~~~l~~ 119 (379)
+..+|+-+-..|+|.+|+ +.|.+++.+.|+++.......++.+-+..
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~R 62 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRR 62 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 333444444444444444 44445555677777655555555444433
No 403
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=82.99 E-value=5 Score=33.79 Aligned_cols=49 Identities=22% Similarity=0.191 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccC
Q 016973 37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE 85 (379)
Q Consensus 37 ~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~ 85 (379)
+..+.+|...+..|+|.-|+..++.++..+|++..+...++.+|.++|.
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555555555555555555555443
No 404
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=82.99 E-value=2.2 Score=31.90 Aligned_cols=30 Identities=17% Similarity=0.194 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~ 31 (379)
|..+..+|..+-..|+|++|+.+|..+|+.
T Consensus 6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 456777788888888888888888888775
No 405
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.93 E-value=6.1 Score=35.28 Aligned_cols=55 Identities=25% Similarity=0.176 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHhccCHHHHH
Q 016973 35 SAELFADRAQASIKLQNFTEAVADANRAIELEPS----MSKAYWRKATACMKLEEYETAK 90 (379)
Q Consensus 35 ~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~----~~~a~~~la~~~~~lg~y~~A~ 90 (379)
.+++.+.+|..|. ..+.++|+..+.+++.+... +++.+..++.+++.+|+++.|.
T Consensus 140 t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 140 TAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3666666665554 46677777777777777532 5777777777777777777764
No 406
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=82.75 E-value=9.8 Score=28.60 Aligned_cols=57 Identities=11% Similarity=0.062 Sum_probs=44.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH---HHHHHHhccCHHHHHHHHHH
Q 016973 39 FADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR---KATACMKLEEYETAKVALEK 95 (379)
Q Consensus 39 ~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~---la~~~~~lg~y~~A~~~~~~ 95 (379)
....|.=++..++.++|+..+.+++...++....+.. +..+|...|+|.+++.+.-+
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777788899999999999999998776654444 55678899999998876543
No 407
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=82.42 E-value=3 Score=30.17 Aligned_cols=30 Identities=47% Similarity=0.490 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~ 31 (379)
|-.+...|..+-..|+|++|+.+|.+++..
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 445677788888888888888888877765
No 408
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=82.17 E-value=4.7 Score=26.63 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=18.2
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHh
Q 016973 74 WRKATACMKLEEYETAKVALEKGAS 98 (379)
Q Consensus 74 ~~la~~~~~lg~y~~A~~~~~~a~~ 98 (379)
+.+|.+|..+|+++.|...++..+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5677777777777777777777773
No 409
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.07 E-value=5.4 Score=37.65 Aligned_cols=59 Identities=20% Similarity=0.163 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 016973 38 LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKG 96 (379)
Q Consensus 38 ~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a 96 (379)
++...|..|...|.+.+|++..++++.++|-+-..+..+-.+|..+|+--.|...|++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34556777888899999999999999999999999999999999999977777666653
No 410
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.51 E-value=14 Score=37.65 Aligned_cols=84 Identities=14% Similarity=0.013 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC------C-CCHHHHHHHHHHHHhccC-HHHHHHHHHHHHhcCCCChHHHH
Q 016973 37 ELFADRAQASIKLQNFTEAVADANRAIELE------P-SMSKAYWRKATACMKLEE-YETAKVALEKGASLAPGDSRFTN 108 (379)
Q Consensus 37 ~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~------p-~~~~a~~~la~~~~~lg~-y~~A~~~~~~a~~l~p~~~~~~~ 108 (379)
.-++.+|.|+..+|+-..|..+|..++.-- + -.|-|+|-+|..|..+|. ..+|.+++.+|.....+..--.+
T Consensus 450 lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~lenR 529 (546)
T KOG3783|consen 450 LKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYELENR 529 (546)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccchhhH
Confidence 346779999999999999999999888331 1 257899999999999999 99999999999988766654445
Q ss_pred HHHHHHHHHHhh
Q 016973 109 LIKECEERIAEE 120 (379)
Q Consensus 109 ~l~~~~~~l~~~ 120 (379)
..-+++..+...
T Consensus 530 Lh~rIqAAl~~~ 541 (546)
T KOG3783|consen 530 LHMRIQAALHTV 541 (546)
T ss_pred HHHHHHHHHHHH
Confidence 555666665554
No 411
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=81.38 E-value=14 Score=37.24 Aligned_cols=89 Identities=15% Similarity=0.079 Sum_probs=48.8
Q ss_pred HHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHccCHHHHHHH-------HHHHHHh---------C--CC
Q 016973 9 AKEAFIDDYFELAYDLYS--QAIEISPNSAELFADRAQASIKLQNFTEAVAD-------ANRAIEL---------E--PS 68 (379)
Q Consensus 9 g~~~~~~g~y~~Al~~y~--~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~-------~~~Al~l---------~--p~ 68 (379)
-..+.-+++|++++++.. +.+..-| .......+..+.+.|..+.|++. |+-|+++ . -+
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~ 345 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELD 345 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCS
T ss_pred HHHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcC
Confidence 345566777777665553 2221122 23344444455555555555432 2222222 2 24
Q ss_pred CHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 016973 69 MSKAYWRKATACMKLEEYETAKVALEKGASL 99 (379)
Q Consensus 69 ~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l 99 (379)
+...|-++|.+....|+++-|..+|+++-.+
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~ 376 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKDF 376 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT-H
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc
Confidence 7889999999999999999999999987543
No 412
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=81.14 E-value=8.4 Score=39.35 Aligned_cols=73 Identities=10% Similarity=0.150 Sum_probs=52.6
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 016973 26 SQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASL 99 (379)
Q Consensus 26 ~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l 99 (379)
.+-|+.+|.+...|+.+-.-+... -+++...+|+..+...|..+.+|-......+..++|+.-...|.+|+.-
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK 82 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 556677777777777766555433 7777777777777777777777777777777777777777777777653
No 413
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=80.93 E-value=6.9 Score=41.12 Aligned_cols=82 Identities=15% Similarity=0.019 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~ 81 (379)
.+++.+.|..+..+..+++|.++|.+.-. ..+...||+++..|++-. .....-|.+.+.+-.+|.++.
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~LE----~la~~Lpe~s~llp~~a~mf~ 863 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGELE----VLARTLPEDSELLPVMADMFT 863 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhhHH----HHHHhcCcccchHHHHHHHHH
Confidence 45778889999999999999999976422 356778888888888633 444445666666777777777
Q ss_pred hccCHHHHHHHHHH
Q 016973 82 KLEEYETAKVALEK 95 (379)
Q Consensus 82 ~lg~y~~A~~~~~~ 95 (379)
..|--++|.++|-+
T Consensus 864 svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 864 SVGMCDQAVEAYLR 877 (1189)
T ss_pred hhchHHHHHHHHHh
Confidence 77777777766643
No 414
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=80.72 E-value=4.5 Score=23.58 Aligned_cols=29 Identities=34% Similarity=0.466 Sum_probs=18.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 016973 16 DYFELAYDLYSQAIEISPNSAELFADRAQ 44 (379)
Q Consensus 16 g~y~~Al~~y~~al~~~p~~~~~~~~ra~ 44 (379)
|+++.|..+|++++...|.+..+|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45666777777777777766666665543
No 415
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=80.13 E-value=7.2 Score=36.86 Aligned_cols=59 Identities=19% Similarity=0.095 Sum_probs=51.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 016973 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAI 63 (379)
Q Consensus 5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al 63 (379)
+...+..|...|.+.+|+++.++++.++|-+...+..+-..|..+|+--.|+..|.+.-
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34457789999999999999999999999999999999999999999888887776643
No 416
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=80.07 E-value=5.6 Score=40.46 Aligned_cols=73 Identities=16% Similarity=0.067 Sum_probs=60.1
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCH---HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhc
Q 016973 50 QNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY---ETAKVALEKGASLAPGDSRFTNLIKECEERIAEETG 122 (379)
Q Consensus 50 g~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y---~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~ 122 (379)
+....|+.+|.++++..|.....+.+++-++...+-. -.|+..+..|++++|....+..++.++...|....+
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~e 463 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLE 463 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHH
Confidence 4567899999999999999999999999999886544 456677778889999988888888888877777633
No 417
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=79.66 E-value=3.2 Score=30.91 Aligned_cols=29 Identities=28% Similarity=0.260 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~ 31 (379)
..+..+|...-..|+|++|+.+|..+|+.
T Consensus 7 i~Lv~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 7 HFLVTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 45666777777788888888888888775
No 418
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=79.27 E-value=44 Score=35.84 Aligned_cols=23 Identities=9% Similarity=0.066 Sum_probs=15.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Q 016973 9 AKEAFIDDYFELAYDLYSQAIEI 31 (379)
Q Consensus 9 g~~~~~~g~y~~Al~~y~~al~~ 31 (379)
|..--..++|++|-.+|+-+...
T Consensus 372 ~rledir~emDd~~~~f~lL~n~ 394 (1102)
T KOG1924|consen 372 GRLEDIRAEMDDANEVFELLANT 394 (1102)
T ss_pred hHHHhhhhhhccHHHHHHHHHHh
Confidence 33444567788888888776665
No 419
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.05 E-value=8.7 Score=34.30 Aligned_cols=47 Identities=23% Similarity=0.279 Sum_probs=40.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHccCHHHHH
Q 016973 10 KEAFIDDYFELAYDLYSQAIEISPN----SAELFADRAQASIKLQNFTEAV 56 (379)
Q Consensus 10 ~~~~~~g~y~~Al~~y~~al~~~p~----~~~~~~~ra~~~~~lg~~~eAl 56 (379)
-.+|...+-+.|+.+|-++|++... +++++..+|.+++++|+++.|-
T Consensus 148 AtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 148 ATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3566799999999999999999443 5899999999999999999874
No 420
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=78.71 E-value=4.3 Score=30.01 Aligned_cols=30 Identities=40% Similarity=0.416 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~ 31 (379)
|..++.+|...-..|+|++|+.+|.++++.
T Consensus 6 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 6 AIELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456677777778888888888888777665
No 421
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=78.70 E-value=33 Score=33.84 Aligned_cols=55 Identities=15% Similarity=0.009 Sum_probs=41.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHH--ccCHHHHHHHHH
Q 016973 6 EKKAKEAFIDDYFELAYDLYSQAIEISPN-----SAELFADRAQASIK--LQNFTEAVADAN 60 (379)
Q Consensus 6 ~~~g~~~~~~g~y~~Al~~y~~al~~~p~-----~~~~~~~ra~~~~~--lg~~~eAl~~~~ 60 (379)
..++..+|+.++|..|...|..++...+. ...++..++.+|.. .=+|.+|...++
T Consensus 134 ~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 134 QGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 45677999999999999999999988542 24555666666644 456788888887
No 422
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=78.65 E-value=6.2 Score=29.31 Aligned_cols=30 Identities=23% Similarity=0.149 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~ 31 (379)
|-.++.+|...-..|+|++|+.+|..+|+.
T Consensus 6 Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 6 AIALVVQAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 446677788888888888888888888775
No 423
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.37 E-value=6 Score=43.30 Aligned_cols=100 Identities=19% Similarity=0.208 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-------C--------
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP-------S-------- 68 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p-------~-------- 68 (379)
.+-..|+.+|..|.|+.|--+|.- ..-|..+|..+..+|+|+.|...+++|-...- .
T Consensus 1196 ~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrl 1267 (1666)
T KOG0985|consen 1196 NIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRL 1267 (1666)
T ss_pred hHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhH
Confidence 345679999999999999999954 45588999999999999999999988753321 0
Q ss_pred ----------CHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 016973 69 ----------MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIK 111 (379)
Q Consensus 69 ----------~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~ 111 (379)
.+.-+-.+-..|...|.|++-+..++.++.+...+-..-..++
T Consensus 1268 AQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELa 1320 (1666)
T KOG0985|consen 1268 AQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELA 1320 (1666)
T ss_pred HHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHH
Confidence 1222233444566788999999999988887655444333333
No 424
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=78.32 E-value=7.1 Score=28.80 Aligned_cols=30 Identities=40% Similarity=0.414 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~ 31 (379)
|..++.+|..+-..|+|++|+.+|.++++.
T Consensus 8 A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 8 AKELISKALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345566667777777777777777766654
No 425
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=78.20 E-value=6.8 Score=28.81 Aligned_cols=30 Identities=33% Similarity=0.458 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~ 31 (379)
|..+...|..+-..|+|++|+.+|..+++.
T Consensus 6 a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 6 AKELIKQAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345667778888888888888888887765
No 426
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=78.10 E-value=4.9 Score=38.94 Aligned_cols=29 Identities=24% Similarity=0.378 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~ 31 (379)
..+...|+.++.+++|+.|...|..|..+
T Consensus 42 e~lv~~G~~~~~~~d~~~Avda~s~A~~l 70 (400)
T KOG4563|consen 42 EELVQAGRRALCNNDIDKAVDALSEATEL 70 (400)
T ss_pred HHHHHhhhHHHhcccHHHHHHHHHHHHHH
Confidence 46777888888888888888888888776
No 427
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=77.90 E-value=5.2 Score=39.58 Aligned_cols=55 Identities=18% Similarity=0.135 Sum_probs=50.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 016973 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRA 62 (379)
Q Consensus 8 ~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~A 62 (379)
...+|++.++.+.|+..-.+.|.++|..+..++.+|.|+..+.+|.+|.+-+--|
T Consensus 234 lv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 234 LVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred HHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999998866544
No 428
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=77.85 E-value=11 Score=27.89 Aligned_cols=30 Identities=23% Similarity=0.453 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~ 31 (379)
|..++.+|...-..|+|++|+.+|..+|+.
T Consensus 6 A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 6 AAELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 345677777788888888888888887775
No 429
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=77.85 E-value=28 Score=37.73 Aligned_cols=96 Identities=20% Similarity=0.020 Sum_probs=79.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-----CHH
Q 016973 6 EKKAKEAFIDDYFELAYDLYSQAIEISPN---------SAELFADRAQASIKLQNFTEAVADANRAIELEPS-----MSK 71 (379)
Q Consensus 6 ~~~g~~~~~~g~y~~Al~~y~~al~~~p~---------~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~-----~~~ 71 (379)
+..|-.+....+|.+|-.++.++...-+. ...+..-+|.+....|++++|+..++.++..-|. ...
T Consensus 419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~ 498 (894)
T COG2909 419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV 498 (894)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence 45677888899999999999888877444 1456677888999999999999999999988764 355
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 016973 72 AYWRKATACMKLEEYETAKVALEKGASLAP 101 (379)
Q Consensus 72 a~~~la~~~~~lg~y~~A~~~~~~a~~l~p 101 (379)
++...|.+..-.|+|++|..+.+.+.++.-
T Consensus 499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~ 528 (894)
T COG2909 499 ALSVLGEAAHIRGELTQALALMQQAEQMAR 528 (894)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHHHHH
Confidence 777889999999999999999999988743
No 430
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=77.36 E-value=11 Score=29.93 Aligned_cols=47 Identities=17% Similarity=0.100 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ 50 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg 50 (379)
.....|...+..|+|..|.+...++-+..+.....|..-|.+...+|
T Consensus 61 ~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 61 RALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 34455555555666666666665555544443444444444444333
No 431
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=76.67 E-value=13 Score=32.66 Aligned_cols=50 Identities=26% Similarity=0.276 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC
Q 016973 52 FTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPG 102 (379)
Q Consensus 52 ~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~ 102 (379)
....++.+++.++..| ++..+.+++.++..+|+.++|...++++..+.|.
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 4566677777777778 7889999999999999999999999999999993
No 432
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=75.40 E-value=27 Score=36.74 Aligned_cols=90 Identities=7% Similarity=-0.005 Sum_probs=67.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------C-------------------HHHHHHHHHHHHHccCHHHHHHH
Q 016973 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPN-------S-------------------AELFADRAQASIKLQNFTEAVAD 58 (379)
Q Consensus 5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~-------~-------------------~~~~~~ra~~~~~lg~~~eAl~~ 58 (379)
++--|...+..+..+.|.+++.++++.-.. . ..+++..+.+.+-++++..|...
T Consensus 304 y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~ 383 (608)
T PF10345_consen 304 YFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQE 383 (608)
T ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 344577777888777888887777776211 0 23445667777778999999988
Q ss_pred HHHHHHhCC---------CCHHHHHHHHHHHHhccCHHHHHHHHH
Q 016973 59 ANRAIELEP---------SMSKAYWRKATACMKLEEYETAKVALE 94 (379)
Q Consensus 59 ~~~Al~l~p---------~~~~a~~~la~~~~~lg~y~~A~~~~~ 94 (379)
...+..... ..+..+|..|..+...|+.+.|+..|.
T Consensus 384 l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 384 LEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 887776532 247889999999999999999999998
No 433
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=74.85 E-value=19 Score=30.09 Aligned_cols=49 Identities=16% Similarity=0.003 Sum_probs=24.2
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 016973 50 QNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGAS 98 (379)
Q Consensus 50 g~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~ 98 (379)
|+-+.--..+.........++..++.+|.+|.++|...+|-+.+.+|-+
T Consensus 100 ~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 100 GKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp T-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3333333333333333444666777777777777777777776666654
No 434
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=73.43 E-value=20 Score=29.47 Aligned_cols=60 Identities=15% Similarity=-0.048 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---------------AELFADRAQASIKLQNFTEAVADANRAI 63 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~---------------~~~~~~ra~~~~~lg~~~eAl~~~~~Al 63 (379)
.+...|+.+++.+++-.|+-.|++|+.+..+- ..-..|+|..+..+|+-+-.++++..|-
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlAS 77 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLAS 77 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHH
Confidence 45678999999999999999999999873211 2224567777777787777777766543
No 435
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=72.94 E-value=48 Score=30.22 Aligned_cols=58 Identities=16% Similarity=0.178 Sum_probs=49.4
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC
Q 016973 45 ASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPG 102 (379)
Q Consensus 45 ~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~ 102 (379)
.+++-+.+++||.++..-++-.|.+......+-..|.-.|+|++|...++-+-++.|+
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~ 67 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ 67 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc
Confidence 4567788999999999999999988888888888899999999999888888877665
No 436
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.67 E-value=22 Score=31.23 Aligned_cols=77 Identities=10% Similarity=0.023 Sum_probs=59.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 016973 6 EKKAKEAFIDDYFELAYDLYSQAIE-ISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (379)
Q Consensus 6 ~~~g~~~~~~g~y~~Al~~y~~al~-~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~l 83 (379)
...|..++..|-|++-....+.+-. .+|-...+...+|.+.++.|+|..|.+.|..+.. +.+-+....+++++...+
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mldl 213 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLDL 213 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHHH
Confidence 4567788899999886666644322 2555577888899999999999999999988665 777788888888877654
No 437
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.32 E-value=49 Score=36.03 Aligned_cols=105 Identities=20% Similarity=0.152 Sum_probs=65.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHH----------c--cCHHHH--HHHHH
Q 016973 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS----------AELFADRAQASIK----------L--QNFTEA--VADAN 60 (379)
Q Consensus 5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~----------~~~~~~ra~~~~~----------l--g~~~eA--l~~~~ 60 (379)
-++.|..+...|++.+|+++|..+|-..|-- +.-+...+.-|+- + ++...+ +..|-
T Consensus 994 kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYF 1073 (1202)
T KOG0292|consen 994 KLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYF 1073 (1202)
T ss_pred HHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHh
Confidence 4678999999999999999999988774421 1122222222211 1 234444 22222
Q ss_pred HHHHhCCCCHHHHHHHHH-HHHhccCHHHHHHHHHHHHhcCCCChHHHHH
Q 016973 61 RAIELEPSMSKAYWRKAT-ACMKLEEYETAKVALEKGASLAPGDSRFTNL 109 (379)
Q Consensus 61 ~Al~l~p~~~~a~~~la~-~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~ 109 (379)
.-..+.|-..-.-++.|. .++.+++|..|..+..+.+++.|..+.+.+.
T Consensus 1074 t~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~ 1123 (1202)
T KOG0292|consen 1074 THCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQA 1123 (1202)
T ss_pred hcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHH
Confidence 222344544333444444 6789999999999999999999988765433
No 438
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=72.25 E-value=58 Score=30.68 Aligned_cols=112 Identities=14% Similarity=0.046 Sum_probs=75.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHH---HHHccCHH----HHHHHHHHHHHhCCCCHHHHHHHHH
Q 016973 8 KAKEAFIDDYFELAYDLYSQAIEISPN--SAELFADRAQA---SIKLQNFT----EAVADANRAIELEPSMSKAYWRKAT 78 (379)
Q Consensus 8 ~g~~~~~~g~y~~Al~~y~~al~~~p~--~~~~~~~ra~~---~~~lg~~~----eAl~~~~~Al~l~p~~~~a~~~la~ 78 (379)
....++..++|++--..|.+.....-+ ..+..|.++.. ++.+.... ..++.++.=+...|++..+++.+|.
T Consensus 6 ~ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~ 85 (277)
T PF13226_consen 6 DIRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGM 85 (277)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHH
Confidence 567889999999999999888765332 12211222211 22222221 2444555556778999999999999
Q ss_pred HHHhcc----------------------CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973 79 ACMKLE----------------------EYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (379)
Q Consensus 79 ~~~~lg----------------------~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~ 119 (379)
++++.. ..+.|..++.+|+.++|....+...+-.+-..++.
T Consensus 86 ~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fge 148 (277)
T PF13226_consen 86 YWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGE 148 (277)
T ss_pred HHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCC
Confidence 887643 25678999999999999988777777666665555
No 439
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.50 E-value=14 Score=39.58 Aligned_cols=29 Identities=21% Similarity=0.165 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 016973 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (379)
Q Consensus 3 ~~l~~~g~~~~~~g~y~~Al~~y~~al~~ 31 (379)
.-+..-|+-+|..|+|++|...|-++|..
T Consensus 369 ~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 369 EIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 45667799999999999999999998876
No 440
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=71.31 E-value=53 Score=34.25 Aligned_cols=82 Identities=12% Similarity=0.043 Sum_probs=64.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHH
Q 016973 11 EAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAK 90 (379)
Q Consensus 11 ~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~ 90 (379)
.+.+....+.|..+.+.-+.....+...++.+|..+-..+..+.|-.+|++.+..+++ .+++..|.-+++.|-...|.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 94 (578)
T PRK15490 17 TLKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQ 94 (578)
T ss_pred HHHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHH
Confidence 4455666677777776666666666777888888888888899999999999998887 77888888899999888888
Q ss_pred HHHH
Q 016973 91 VALE 94 (379)
Q Consensus 91 ~~~~ 94 (379)
..++
T Consensus 95 ~~~~ 98 (578)
T PRK15490 95 LILK 98 (578)
T ss_pred HHHH
Confidence 7776
No 441
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=71.22 E-value=7.8 Score=25.61 Aligned_cols=25 Identities=28% Similarity=0.271 Sum_probs=22.3
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Q 016973 40 ADRAQASIKLQNFTEAVADANRAIE 64 (379)
Q Consensus 40 ~~ra~~~~~lg~~~eAl~~~~~Al~ 64 (379)
+.+|.+|+.+|+++.|...++..+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5789999999999999999999884
No 442
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.53 E-value=31 Score=35.61 Aligned_cols=98 Identities=11% Similarity=0.078 Sum_probs=63.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHH-HHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Q 016973 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPN-SAELFAD-RAQASIKLQNFTEAVADANRAIELE--PSMSKAYWRKATAC 80 (379)
Q Consensus 5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~-~~~~~~~-ra~~~~~lg~~~eAl~~~~~Al~l~--p~~~~a~~~la~~~ 80 (379)
++..-..+-+.|-+..|++.+.-.+.++|. ++.+... .-...++..+|+=-|+.++..-..+ ...+..-|.+|.++
T Consensus 345 l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~ 424 (665)
T KOG2422|consen 345 LFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALAR 424 (665)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHH
Confidence 444555677899999999999999999998 6544333 3333344456665555555442222 12344456677766
Q ss_pred HhccC-----HHHHHHHHHHHHhcCCC
Q 016973 81 MKLEE-----YETAKVALEKGASLAPG 102 (379)
Q Consensus 81 ~~lg~-----y~~A~~~~~~a~~l~p~ 102 (379)
+.+.. -..|..++.+|+.+.|.
T Consensus 425 f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 425 FFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred HHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 65543 45688899999988884
No 443
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=70.15 E-value=14 Score=21.37 Aligned_cols=28 Identities=21% Similarity=0.210 Sum_probs=16.6
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 016973 51 NFTEAVADANRAIELEPSMSKAYWRKAT 78 (379)
Q Consensus 51 ~~~eAl~~~~~Al~l~p~~~~a~~~la~ 78 (379)
+++.|...|++++...|.....|...+.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 4555666666666666666666655543
No 444
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.07 E-value=21 Score=37.02 Aligned_cols=67 Identities=21% Similarity=0.238 Sum_probs=47.5
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 016973 24 LYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASL 99 (379)
Q Consensus 24 ~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l 99 (379)
..++||.+.++. .+|-.+.+++|+++.|.+.+.++ ++..-|-.||.+....+++..|.+||.++..+
T Consensus 629 ~~e~AL~~s~D~----d~rFelal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 629 MKEQALELSTDP----DQRFELALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred chHhhhhcCCCh----hhhhhhhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 344555554432 22344556778888877755444 56778999999999999999999999988665
No 445
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=69.86 E-value=46 Score=26.69 Aligned_cols=86 Identities=13% Similarity=-0.026 Sum_probs=51.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Q 016973 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (379)
Q Consensus 5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg 84 (379)
+...|...-.....++|..+++-.-........+..-|...+...|+|++|+. +......+..---++.|-.++|
T Consensus 9 LAElAL~atG~HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~ALl-----~~~~~~~pdL~p~~AL~a~klG 83 (116)
T PF09477_consen 9 LAELALMATGHHCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEALL-----LPQCHCYPDLEPWAALCAWKLG 83 (116)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHHHH-----HHTTS--GGGHHHHHHHHHHCT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHH-----hcccCCCccHHHHHHHHHHhhc
Confidence 44556666667777888877765544444344556667778888888888832 2333344444444566677888
Q ss_pred CHHHHHHHHHH
Q 016973 85 EYETAKVALEK 95 (379)
Q Consensus 85 ~y~~A~~~~~~ 95 (379)
--.++...+.+
T Consensus 84 L~~~~e~~l~r 94 (116)
T PF09477_consen 84 LASALESRLTR 94 (116)
T ss_dssp -HHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 88777776663
No 446
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=68.30 E-value=48 Score=33.10 Aligned_cols=96 Identities=18% Similarity=0.043 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHccC--------------HHHHHHHHHHHH
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA------ELFADRAQASIKLQN--------------FTEAVADANRAI 63 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~------~~~~~ra~~~~~lg~--------------~~eAl~~~~~Al 63 (379)
.+...|+.+|-.++|+.|+..|..+....-++- .++.-.|.|++..+. ++.|...|..+-
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~ 289 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSA 289 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhh
Confidence 456789999999999999999999988754432 222234444544442 234444454421
Q ss_pred ----HhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 016973 64 ----ELEPSMSKAYWRKATACMKLEEYETAKVALEKGASL 99 (379)
Q Consensus 64 ----~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l 99 (379)
.....-..+.+..+.++..++.|.+|...+-+....
T Consensus 290 ~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 290 LPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred ccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 111123456666777888889988877766666544
No 447
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=68.17 E-value=50 Score=33.35 Aligned_cols=82 Identities=15% Similarity=0.146 Sum_probs=48.7
Q ss_pred HHHHHHcCCHHHHHHH-------HHHHHHh-----------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----
Q 016973 9 AKEAFIDDYFELAYDL-------YSQAIEI-----------SPNSAELFADRAQASIKLQNFTEAVADANRAIELE---- 66 (379)
Q Consensus 9 g~~~~~~g~y~~Al~~-------y~~al~~-----------~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~---- 66 (379)
+.-+.+.|-++.|+.. |+-||+. .-++...|..+|...+..|+++-|..+|.++-..+
T Consensus 302 ~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~l 381 (443)
T PF04053_consen 302 ARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAKDFSGLLL 381 (443)
T ss_dssp HHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHH
T ss_pred HHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHH
Confidence 3445555555666654 3333333 23567899999999999999999999988763222
Q ss_pred ----CCCHHHHHHHHHHHHhccCHHHHH
Q 016973 67 ----PSMSKAYWRKATACMKLEEYETAK 90 (379)
Q Consensus 67 ----p~~~~a~~~la~~~~~lg~y~~A~ 90 (379)
..+...+-.++......|++.-|.
T Consensus 382 Ly~~~g~~~~L~kl~~~a~~~~~~n~af 409 (443)
T PF04053_consen 382 LYSSTGDREKLSKLAKIAEERGDINIAF 409 (443)
T ss_dssp HHHHCT-HHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHccCHHHHH
Confidence 234444445555555555554443
No 448
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=65.95 E-value=68 Score=25.73 Aligned_cols=76 Identities=12% Similarity=0.006 Sum_probs=46.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 016973 39 FADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (379)
Q Consensus 39 ~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~ 118 (379)
+..+|.+-.....+++|...++-.-......-.+.+-+...+.+.|+|++|+ .+......+++.-|.+.|.-+++
T Consensus 9 LAElAL~atG~HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~AL-----l~~~~~~~pdL~p~~AL~a~klG 83 (116)
T PF09477_consen 9 LAELALMATGHHCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEAL-----LLPQCHCYPDLEPWAALCAWKLG 83 (116)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHHH-----HHHTTS--GGGHHHHHHHHHHCT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHH-----HhcccCCCccHHHHHHHHHHhhc
Confidence 3445555556677888877776554444434456677788899999999993 23344455666777777665544
Q ss_pred h
Q 016973 119 E 119 (379)
Q Consensus 119 ~ 119 (379)
-
T Consensus 84 L 84 (116)
T PF09477_consen 84 L 84 (116)
T ss_dssp -
T ss_pred c
Confidence 3
No 449
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=64.28 E-value=83 Score=38.00 Aligned_cols=99 Identities=14% Similarity=0.106 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CC------------
Q 016973 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE-PS------------ 68 (379)
Q Consensus 2 A~~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~-p~------------ 68 (379)
++-|.+.|..+-..|.++.|...+-.|.+.. -+.++..+|..+.+.|+-..|+..++..+.++ |+
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~ 1747 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSV 1747 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhh
Confidence 4678889999999999999999998988877 46888999999999999999999999999664 22
Q ss_pred ----CHHHHHHHHHHHHhccCHH--HHHHHHHHHHhcCCC
Q 016973 69 ----MSKAYWRKATACMKLEEYE--TAKVALEKGASLAPG 102 (379)
Q Consensus 69 ----~~~a~~~la~~~~~lg~y~--~A~~~~~~a~~l~p~ 102 (379)
...+.+..+.-....+++. +-+..|..+.++.|.
T Consensus 1748 n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~e 1787 (2382)
T KOG0890|consen 1748 NLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPE 1787 (2382)
T ss_pred hhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHccc
Confidence 1334555555555566543 456678888888774
No 450
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=64.16 E-value=78 Score=29.42 Aligned_cols=92 Identities=17% Similarity=-0.011 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHccCHH-HHHHHHHHHHHhC------CCCHH
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEI-----SPNSAELFADRAQASIKLQNFT-EAVADANRAIELE------PSMSK 71 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~-----~p~~~~~~~~ra~~~~~lg~~~-eAl~~~~~Al~l~------p~~~~ 71 (379)
-++.=+..+++.|++..|.++..-.|+. .+.+....-+++.++..+..-+ +-....++|+.-. -.++.
T Consensus 12 LL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~ 91 (260)
T PF04190_consen 12 LLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPE 91 (260)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HH
T ss_pred HHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHH
Confidence 3455567888899998888776555554 3445555667777776665332 3334444555432 14789
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHH
Q 016973 72 AYWRKATACMKLEEYETAKVALEK 95 (379)
Q Consensus 72 a~~~la~~~~~lg~y~~A~~~~~~ 95 (379)
.|..+|..|++.|+|.+|..+|-.
T Consensus 92 LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 92 LHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHHHHHhhccHHHHHHHHHh
Confidence 999999999999999999988754
No 451
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=63.38 E-value=24 Score=20.86 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 016973 21 AYDLYSQAIEISPNSAELFADRAQASIK 48 (379)
Q Consensus 21 Al~~y~~al~~~p~~~~~~~~ra~~~~~ 48 (379)
.+.+..++|..+|.+..++..|-.++.+
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~ 29 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQ 29 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHH
Confidence 4566677777777777777776666544
No 452
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=63.28 E-value=90 Score=32.25 Aligned_cols=91 Identities=12% Similarity=0.075 Sum_probs=66.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCC-CHHHHHHHHHHHHhccCHH
Q 016973 11 EAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL--EPS-MSKAYWRKATACMKLEEYE 87 (379)
Q Consensus 11 ~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l--~p~-~~~a~~~la~~~~~lg~y~ 87 (379)
.++..+++..|...|.-.|...++.+.+-+.....+..+++-..|...|++++.- .++ ....|-++-..-..-|+..
T Consensus 410 Ey~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~ 489 (656)
T KOG1914|consen 410 EYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLN 489 (656)
T ss_pred HHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHH
Confidence 5677888888888888888888888887777777888888888888888888876 332 3456666666667777777
Q ss_pred HHHHHHHHHHhcCC
Q 016973 88 TAKVALEKGASLAP 101 (379)
Q Consensus 88 ~A~~~~~~a~~l~p 101 (379)
.++..=++-....|
T Consensus 490 si~~lekR~~~af~ 503 (656)
T KOG1914|consen 490 SILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHHHHHhcc
Confidence 77766555555444
No 453
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=62.98 E-value=91 Score=39.16 Aligned_cols=80 Identities=20% Similarity=0.092 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc--------CHHHHHHHHHHHHhcCCCChHHH
Q 016973 36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE--------EYETAKVALEKGASLAPGDSRFT 107 (379)
Q Consensus 36 ~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg--------~y~~A~~~~~~a~~l~p~~~~~~ 107 (379)
++++..+|..+.++|++++|-+.|..|++++-..+++|...|..+.++- --..|+.||-+|....-+.. ..
T Consensus 2812 aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~~sk-aR 2890 (3550)
T KOG0889|consen 2812 AEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYNSSK-AR 2890 (3550)
T ss_pred HHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccccchh-hH
Confidence 6788899999999999999999999999999999999999998776521 23467888888877664432 34
Q ss_pred HHHHHHHHH
Q 016973 108 NLIKECEER 116 (379)
Q Consensus 108 ~~l~~~~~~ 116 (379)
..++++.-.
T Consensus 2891 k~iakvLwL 2899 (3550)
T KOG0889|consen 2891 KLIAKVLWL 2899 (3550)
T ss_pred HHHHHHHHH
Confidence 444444433
No 454
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=62.40 E-value=18 Score=36.50 Aligned_cols=53 Identities=17% Similarity=0.100 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHH
Q 016973 37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETA 89 (379)
Q Consensus 37 ~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A 89 (379)
+....+|.-.+..|+|.=+.+.+++++--+|.+..+....|.+|.++|.-.++
T Consensus 453 drVl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqaE~ 505 (655)
T COG2015 453 DRVLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQAES 505 (655)
T ss_pred HHHHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhhhcc
Confidence 34556777777788888888888888888888888888888888888876544
No 455
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=62.09 E-value=37 Score=26.94 Aligned_cols=40 Identities=18% Similarity=0.187 Sum_probs=17.9
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 016973 74 WRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (379)
Q Consensus 74 ~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~ 118 (379)
+.+...+.+.|+|++|....+.. ..+++.-|++.|.-+++
T Consensus 43 lIRlsSLmNrG~Yq~Al~l~~~~-----~~pdlepw~ALce~rlG 82 (115)
T TIGR02508 43 LIRLSSLMNRGDYQSALQLGNKL-----CYPDLEPWLALCEWRLG 82 (115)
T ss_pred HHHHHHHHccchHHHHHHhcCCC-----CCchHHHHHHHHHHhhc
Confidence 33444555555555555433221 13444445554444433
No 456
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=61.69 E-value=83 Score=30.52 Aligned_cols=61 Identities=21% Similarity=0.151 Sum_probs=46.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 016973 39 FADRAQASIKLQNFTEAVADANRAIELEPS--MSKAYWRKATACMKLEEYETAKVALEKGASL 99 (379)
Q Consensus 39 ~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~--~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l 99 (379)
-.++|.|..++|+..+|++.++...+-.|- ...++-++-.++..+.-|.+....+.+.-.+
T Consensus 278 KRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdi 340 (556)
T KOG3807|consen 278 KRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDI 340 (556)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 356899999999999999999988887773 3456667778888888787776666655444
No 457
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=61.37 E-value=44 Score=24.88 Aligned_cols=21 Identities=24% Similarity=0.142 Sum_probs=8.3
Q ss_pred HHHHHHHHccCHHHHHHHHHH
Q 016973 41 DRAQASIKLQNFTEAVADANR 61 (379)
Q Consensus 41 ~ra~~~~~lg~~~eAl~~~~~ 61 (379)
.+|.-+-+.|+|++|+.+|..
T Consensus 11 ~~Ave~D~~g~y~eAl~~Y~~ 31 (77)
T cd02683 11 KRAVELDQEGRFQEALVCYQE 31 (77)
T ss_pred HHHHHHHHhccHHHHHHHHHH
Confidence 333333333444444444333
No 458
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=60.73 E-value=41 Score=33.69 Aligned_cols=117 Identities=14% Similarity=0.055 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHH--H------------------HccCHHHHHHHHHHH
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA-ELFADRAQAS--I------------------KLQNFTEAVADANRA 62 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~-~~~~~ra~~~--~------------------~lg~~~eAl~~~~~A 62 (379)
..+..|...+..+++..++..+.+||+..-.-- .-...|..|- . .-|.+-+-..++.++
T Consensus 33 ~ay~~gl~~y~~~~w~~~v~~le~ALr~~~~~~~~~~~Cr~~C~g~~~~~e~~~~~~s~~~~~~a~fg~~le~a~Cl~rC 112 (471)
T KOG4459|consen 33 LAYSHGLESYEEENWPEAVRFLERALRLFRALRDSEAFCRTNCEGPAQLPEPEAGSASFGGLYLAIFGHLLERAACLRRC 112 (471)
T ss_pred HHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHhhccCcccCCCchhcccccchhHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999998731100 0001122222 0 112222333333333
Q ss_pred HHhC---CC----------CHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 016973 63 IELE---PS----------MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (379)
Q Consensus 63 l~l~---p~----------~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (379)
..-. +. ....|.+|-.+|++.|++..|+++-...+-.+|++...+..+..-+..++..
T Consensus 113 kg~~~~~~~~~~~~~~df~~r~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyYq~~l~~s 183 (471)
T KOG4459|consen 113 KGELAARHGSDRSPYLDFRPRLPYQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYYQTMLGVS 183 (471)
T ss_pred hcccccCCCcccchhhhhccchHHHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHHHhccCCC
Confidence 3221 11 2356788899999999999999999999999999998888887776665554
No 459
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=59.39 E-value=1.5e+02 Score=30.05 Aligned_cols=93 Identities=14% Similarity=0.095 Sum_probs=55.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhccCHHH
Q 016973 11 EAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM--SKAYWRKATACMKLEEYET 88 (379)
Q Consensus 11 ~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~--~~a~~~la~~~~~lg~y~~ 88 (379)
.++..|++..|...|.-.|...|+...+-...-..++..++-..|...|+.++..-... ...|-.+-..-..-|+...
T Consensus 441 E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~ 520 (660)
T COG5107 441 EYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNN 520 (660)
T ss_pred HHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHH
Confidence 45556677777777777777777666655555555666677777777776665432221 3334344444455666666
Q ss_pred HHHHHHHHHhcCCCC
Q 016973 89 AKVALEKGASLAPGD 103 (379)
Q Consensus 89 A~~~~~~a~~l~p~~ 103 (379)
+...-++..++.|..
T Consensus 521 v~sLe~rf~e~~pQe 535 (660)
T COG5107 521 VYSLEERFRELVPQE 535 (660)
T ss_pred HHhHHHHHHHHcCcH
Confidence 666666666666643
No 460
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.22 E-value=26 Score=34.25 Aligned_cols=74 Identities=18% Similarity=0.111 Sum_probs=49.1
Q ss_pred ccCCeEEEEEEeCCCCCCceEEEEeecEEEEEEEcCCCceeeeccccccccccCcceEEEeCcEEEEEEeecCCC
Q 016973 185 QKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPI 259 (379)
Q Consensus 185 Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~ 259 (379)
=++-.=+|+|.++|-..-.+..++.++ |.|.+....-..=..+.+|-.+..|+.-++.|.+.++.+++.|+...
T Consensus 65 isg~~etV~Vtl~G~ns~~~~~~~~~d-FkV~ADLt~a~~Gt~evkl~ve~l~~~ltvsV~P~~~~Vti~kk~tk 138 (403)
T COG4856 65 ISGQPETVTVTLKGPNSIVLKSEKPED-FKVVADLTHAGVGTHEVKLQVEGLPDGLTVSVNPEKATVTIEKKVTK 138 (403)
T ss_pred ccCCceEEEEEEeCCcceeeeeecCcC-eEEEEEhhhcCCCceEeeeEeecCCCCceEEEccceeEEEEeeeeEE
Confidence 344445666777776554555555554 66665432211112367888889999999999999999999997654
No 461
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=58.18 E-value=60 Score=23.20 Aligned_cols=15 Identities=20% Similarity=0.257 Sum_probs=6.1
Q ss_pred hccCHHHHHHHHHHH
Q 016973 82 KLEEYETAKVALEKG 96 (379)
Q Consensus 82 ~lg~y~~A~~~~~~a 96 (379)
..|+|++|+.+|..+
T Consensus 17 ~~g~~~~A~~~Y~~a 31 (69)
T PF04212_consen 17 EAGNYEEALELYKEA 31 (69)
T ss_dssp HTTSHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHH
Confidence 344444444444433
No 462
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=57.85 E-value=76 Score=30.15 Aligned_cols=48 Identities=10% Similarity=0.082 Sum_probs=37.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHccCHH
Q 016973 6 EKKAKEAFIDDYFELAYDLYSQAIEISP--------NSAELFADRAQASIKLQNFT 53 (379)
Q Consensus 6 ~~~g~~~~~~g~y~~Al~~y~~al~~~p--------~~~~~~~~ra~~~~~lg~~~ 53 (379)
.+.|+.+.+..++++|+..|.+.|...- ........++..|...|++.
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~ 62 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYC 62 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcc
Confidence 5789999999999999999999988721 11345677888888887754
No 463
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=57.75 E-value=62 Score=30.50 Aligned_cols=71 Identities=18% Similarity=0.083 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----------------------cCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 016973 20 LAYDLYSQAIEISPNSAELFADRAQASIKL----------------------QNFTEAVADANRAIELEPSMSKAYWRKA 77 (379)
Q Consensus 20 ~Al~~y~~al~~~p~~~~~~~~ra~~~~~l----------------------g~~~eAl~~~~~Al~l~p~~~~a~~~la 77 (379)
.-+..++.-++..|++..+++.+|.++.+. .-.+.|..++.+|+.++|....++..+-
T Consensus 61 ~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~ 140 (277)
T PF13226_consen 61 ARLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMI 140 (277)
T ss_pred hHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 456777888888999999999999887665 2356788999999999999999999988
Q ss_pred HHHHhccCHHHHH
Q 016973 78 TACMKLEEYETAK 90 (379)
Q Consensus 78 ~~~~~lg~y~~A~ 90 (379)
.+-..+|..+=-.
T Consensus 141 ~~s~~fgeP~WL~ 153 (277)
T PF13226_consen 141 NISAYFGEPDWLA 153 (277)
T ss_pred HHHhhcCCchHHH
Confidence 8888888875433
No 464
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=57.71 E-value=20 Score=26.70 Aligned_cols=19 Identities=32% Similarity=0.237 Sum_probs=14.7
Q ss_pred HccCHHHHHHHHHHHHHhC
Q 016973 48 KLQNFTEAVADANRAIELE 66 (379)
Q Consensus 48 ~lg~~~eAl~~~~~Al~l~ 66 (379)
..|+|++|+..|..|++..
T Consensus 18 ~~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 18 EKGNAEEAIELYTEAVELC 36 (75)
T ss_pred HhhhHHHHHHHHHHHHHHH
Confidence 4588888888888887653
No 465
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=57.34 E-value=1.3e+02 Score=32.88 Aligned_cols=81 Identities=16% Similarity=0.039 Sum_probs=64.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----C--HHHH
Q 016973 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS-----AELFADRAQASIKLQNFTEAVADANRAIELEPS----M--SKAY 73 (379)
Q Consensus 5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~-----~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~----~--~~a~ 73 (379)
..-+|.++...|+.+.|+++.+.++..-|.+ ..++...|.+..-.|++.+|+.....+.++... . .-+.
T Consensus 461 ~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~ 540 (894)
T COG2909 461 QALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSL 540 (894)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 3456888999999999999999999997765 566777888888889999999988888877432 2 2344
Q ss_pred HHHHHHHHhccC
Q 016973 74 WRKATACMKLEE 85 (379)
Q Consensus 74 ~~la~~~~~lg~ 85 (379)
+..+.++...|+
T Consensus 541 ~~~s~il~~qGq 552 (894)
T COG2909 541 LQQSEILEAQGQ 552 (894)
T ss_pred HHHHHHHHHhhH
Confidence 566888888883
No 466
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=57.19 E-value=86 Score=32.54 Aligned_cols=83 Identities=17% Similarity=0.123 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHhccCHHHHHHHHHHHH
Q 016973 19 ELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK-ATACMKLEEYETAKVALEKGA 97 (379)
Q Consensus 19 ~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~l-a~~~~~lg~y~~A~~~~~~a~ 97 (379)
..+...|+..|...|....+|...|..-.++|....++..|++++.--|.....|..+ +.+...-|+-+.-...|++|.
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~ 141 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK 141 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 4555668888888898888889999999999999999999999998888666665543 333345566666666777777
Q ss_pred hcCC
Q 016973 98 SLAP 101 (379)
Q Consensus 98 ~l~p 101 (379)
....
T Consensus 142 ~~vG 145 (577)
T KOG1258|consen 142 SYVG 145 (577)
T ss_pred Hhcc
Confidence 6654
No 467
>PF12854 PPR_1: PPR repeat
Probab=57.10 E-value=25 Score=21.40 Aligned_cols=26 Identities=12% Similarity=0.014 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHH
Q 016973 36 AELFADRAQASIKLQNFTEAVADANR 61 (379)
Q Consensus 36 ~~~~~~ra~~~~~lg~~~eAl~~~~~ 61 (379)
...|..+-.+|.+.|++++|++.+++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 44566667777777777777777654
No 468
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=56.45 E-value=26 Score=21.44 Aligned_cols=30 Identities=23% Similarity=0.184 Sum_probs=17.3
Q ss_pred HHHHHHHH--HHHHhcc-----CHHHHHHHHHHHHhc
Q 016973 70 SKAYWRKA--TACMKLE-----EYETAKVALEKGASL 99 (379)
Q Consensus 70 ~~a~~~la--~~~~~lg-----~y~~A~~~~~~a~~l 99 (379)
+.+++++| .+|..-. ++.+|+.+|+++.+.
T Consensus 1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHHc
Confidence 35667777 4333322 366777777776554
No 469
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=55.95 E-value=1.1e+02 Score=24.87 Aligned_cols=80 Identities=14% Similarity=0.107 Sum_probs=48.8
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHH---------HHHHhCCCCHHHHHHHHHHHHh
Q 016973 12 AFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN---------RAIELEPSMSKAYWRKATACMK 82 (379)
Q Consensus 12 ~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~---------~Al~l~p~~~~a~~~la~~~~~ 82 (379)
+...+....++.++..++..++.+..++..+..+|.+.+ -...+..+. +++.+.... ..+-....+|.+
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~~~~~yd~~~~~~~c~~~-~l~~~~~~l~~k 94 (140)
T smart00299 17 FEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDNKSNHYDIEKVGKLCEKA-KLYEEAVELYKK 94 (140)
T ss_pred HHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHhccccCCHHHHHHHHHHc-CcHHHHHHHHHh
Confidence 344678999999999999998888888888888887653 334444443 222222211 112234445556
Q ss_pred ccCHHHHHHHH
Q 016973 83 LEEYETAKVAL 93 (379)
Q Consensus 83 lg~y~~A~~~~ 93 (379)
.|.+.+|+..+
T Consensus 95 ~~~~~~Al~~~ 105 (140)
T smart00299 95 DGNFKDAIVTL 105 (140)
T ss_pred hcCHHHHHHHH
Confidence 66666666554
No 470
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=55.55 E-value=45 Score=29.18 Aligned_cols=48 Identities=23% Similarity=0.187 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 016973 19 ELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP 67 (379)
Q Consensus 19 ~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p 67 (379)
...++...+.+...|. +..+.+++.++..+|+.++|.+...++..+.|
T Consensus 128 ~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 128 EAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4455566677777774 78889999999999999999999999999999
No 471
>PF14098 SSPI: Small, acid-soluble spore protein I
Probab=55.53 E-value=12 Score=26.95 Aligned_cols=26 Identities=23% Similarity=0.525 Sum_probs=23.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHhhhhhh
Q 016973 320 ALNKFFQEIYADADEDTRRAMKKSFV 345 (379)
Q Consensus 320 ~l~~~f~~iY~~~d~d~kram~Ks~~ 345 (379)
+|--||..||+++|++.|..|+.+-.
T Consensus 37 GLGVlFE~~W~~~~~~ek~~m~~~l~ 62 (65)
T PF14098_consen 37 GLGVLFEVIWKNSDESEKQEMVNTLE 62 (65)
T ss_pred chHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 48889999999999999999997643
No 472
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=55.53 E-value=31 Score=34.70 Aligned_cols=70 Identities=17% Similarity=0.179 Sum_probs=57.8
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 016973 25 YSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGA 97 (379)
Q Consensus 25 y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~ 97 (379)
|++++...+-.++.|+....-+...++-+.|+....+++...|. .+++++.+|....+-++-..+|.+|.
T Consensus 291 ~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~ 360 (660)
T COG5107 291 HNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCT 360 (660)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHH
Confidence 78888888999999999998888899999999999888887775 77888988887777666666666554
No 473
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=55.34 E-value=28 Score=35.84 Aligned_cols=73 Identities=18% Similarity=0.212 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHH
Q 016973 16 DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEK 95 (379)
Q Consensus 16 g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~ 95 (379)
..|.-|+-.|-.+-++.|... +..|. .-|.+|+...++... ....-.|..+|-+|++.++|.+|+.++..
T Consensus 274 ~~YPmALg~LadLeEi~pt~~-----r~~~~---~l~~~AI~sa~~~Y~--n~HvYPYty~gg~~yR~~~~~eA~~~Wa~ 343 (618)
T PF05053_consen 274 ARYPMALGNLADLEEIDPTPG-----RPTPL---ELFNEAISSARTYYN--NHHVYPYTYLGGYYYRHKRYREALRSWAE 343 (618)
T ss_dssp TT-HHHHHHHHHHHHHS--TT-----S--HH---HHHHHHHHHHHHHCT--T--SHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hhCchhhhhhHhHHhhccCCC-----CCCHH---HHHHHHHHHHHHHhc--CCccccceehhhHHHHHHHHHHHHHHHHH
Confidence 356666666666666655421 00010 113333333332221 12333455566666667777777666665
Q ss_pred HHh
Q 016973 96 GAS 98 (379)
Q Consensus 96 a~~ 98 (379)
+-.
T Consensus 344 aa~ 346 (618)
T PF05053_consen 344 AAD 346 (618)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 474
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=54.62 E-value=23 Score=26.57 Aligned_cols=16 Identities=25% Similarity=0.588 Sum_probs=7.6
Q ss_pred CHHHHHHHHHHHHHhC
Q 016973 17 YFELAYDLYSQAIEIS 32 (379)
Q Consensus 17 ~y~~Al~~y~~al~~~ 32 (379)
.|+.|....++||..+
T Consensus 4 ~~~~A~~~I~kaL~~d 19 (79)
T cd02679 4 YYKQAFEEISKALRAD 19 (79)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 3445555554444443
No 475
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.86 E-value=68 Score=32.91 Aligned_cols=92 Identities=12% Similarity=0.011 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 016973 20 LAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP--SMSKAYWRKATACMKLEEYETAKVALEKGA 97 (379)
Q Consensus 20 ~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p--~~~~a~~~la~~~~~lg~y~~A~~~~~~a~ 97 (379)
...+.+.......|+++.+++..|..+...|+.+.|+..++.++...- -..-.+|-+|.++..+.+|.+|...+....
T Consensus 251 ~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~ 330 (546)
T KOG3783|consen 251 ECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLR 330 (546)
T ss_pred HHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 344445555566888888888888888888887777777777766111 123466778888888888888887777666
Q ss_pred hcCCCChHHHHHHH
Q 016973 98 SLAPGDSRFTNLIK 111 (379)
Q Consensus 98 ~l~p~~~~~~~~l~ 111 (379)
.+..=...+...++
T Consensus 331 desdWS~a~Y~Yfa 344 (546)
T KOG3783|consen 331 DESDWSHAFYTYFA 344 (546)
T ss_pred hhhhhhHHHHHHHH
Confidence 55443333344443
No 476
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=53.62 E-value=58 Score=31.20 Aligned_cols=17 Identities=35% Similarity=0.501 Sum_probs=7.4
Q ss_pred HcCCHHHHHHHHHHHHH
Q 016973 14 IDDYFELAYDLYSQAIE 30 (379)
Q Consensus 14 ~~g~y~~Al~~y~~al~ 30 (379)
..++|++|+.+|..+|+
T Consensus 22 ~a~nY~eA~~lY~~ale 38 (439)
T KOG0739|consen 22 NAKNYEEALRLYQNALE 38 (439)
T ss_pred chhchHHHHHHHHHHHH
Confidence 34444444444444433
No 477
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=52.39 E-value=33 Score=20.43 Aligned_cols=28 Identities=18% Similarity=0.077 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhc----cCHHHHHHHHHHHHh
Q 016973 71 KAYWRKATACMKL----EEYETAKVALEKGAS 98 (379)
Q Consensus 71 ~a~~~la~~~~~l----g~y~~A~~~~~~a~~ 98 (379)
.+++.+|.+|+.- .++..|..+|+++.+
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 3556666665432 256666666666554
No 478
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.17 E-value=74 Score=33.29 Aligned_cols=83 Identities=19% Similarity=0.130 Sum_probs=54.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------CCHHHHHHHH-----
Q 016973 11 EAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP--------SMSKAYWRKA----- 77 (379)
Q Consensus 11 ~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p--------~~~~a~~~la----- 77 (379)
.+.+.|+++.|.++..+ .++..-|-.+|.+.+..+++..|.+++.+|..+.. .+.+.+-.+|
T Consensus 646 lal~lgrl~iA~~la~e-----~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~ 720 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVE-----ANSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKK 720 (794)
T ss_pred hhhhcCcHHHHHHHHHh-----hcchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHh
Confidence 44455555555444333 35667788999999999999999999998865532 2333332222
Q ss_pred --------HHHHhccCHHHHHHHHHHHHh
Q 016973 78 --------TACMKLEEYETAKVALEKGAS 98 (379)
Q Consensus 78 --------~~~~~lg~y~~A~~~~~~a~~ 98 (379)
.||+.+|++++++..+....+
T Consensus 721 ~g~~N~AF~~~~l~g~~~~C~~lLi~t~r 749 (794)
T KOG0276|consen 721 QGKNNLAFLAYFLSGDYEECLELLISTQR 749 (794)
T ss_pred hcccchHHHHHHHcCCHHHHHHHHHhcCc
Confidence 366778888888777765533
No 479
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=51.94 E-value=81 Score=23.08 Aligned_cols=15 Identities=20% Similarity=0.166 Sum_probs=5.8
Q ss_pred HhccCHHHHHHHHHH
Q 016973 81 MKLEEYETAKVALEK 95 (379)
Q Consensus 81 ~~lg~y~~A~~~~~~ 95 (379)
-..|+|++|+.+|..
T Consensus 17 D~~g~y~eA~~~Y~~ 31 (75)
T cd02678 17 DNAGNYEEALRLYQH 31 (75)
T ss_pred HHcCCHHHHHHHHHH
Confidence 333444433333333
No 480
>TIGR03092 SASP_sspI small, acid-soluble spore protein I. This protein family is restricted to a subset of endospore-forming bacteria such as Bacillus subtilis, all of which are in the Firmicutes (low-GC Gram-positive) lineage. It is a minor SASP (small, acid-soluble spore protein) designated SspI. The gene in Bacillus subtilis previously was designated ysfA.
Probab=51.80 E-value=13 Score=26.62 Aligned_cols=25 Identities=24% Similarity=0.538 Sum_probs=22.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHhhhhh
Q 016973 320 ALNKFFQEIYADADEDTRRAMKKSF 344 (379)
Q Consensus 320 ~l~~~f~~iY~~~d~d~kram~Ks~ 344 (379)
+|--||..+|.++|+..|..|+.+-
T Consensus 36 GLGVlFE~~W~~~~~~ek~~m~~~l 60 (65)
T TIGR03092 36 GLGVLFEAIWKHANEQEKDEMLETL 60 (65)
T ss_pred ccHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3788999999999999999999864
No 481
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=51.56 E-value=77 Score=34.01 Aligned_cols=91 Identities=18% Similarity=0.145 Sum_probs=54.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHH------HHHh----CCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHh------C---
Q 016973 7 KKAKEAFIDDYFELAYDLYSQ------AIEI----SPNSA-ELFADRAQASIKLQNFTEAVADANRAIEL------E--- 66 (379)
Q Consensus 7 ~~g~~~~~~g~y~~Al~~y~~------al~~----~p~~~-~~~~~ra~~~~~lg~~~eAl~~~~~Al~l------~--- 66 (379)
..|..+-+-.+++.|+++|.+ |+++ .|... .+-..-|.-+.+.|+++.|+..|-.|-.+ .
T Consensus 666 kagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~a 745 (1636)
T KOG3616|consen 666 KAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGA 745 (1636)
T ss_pred hhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhh
Confidence 346677777888888888653 4444 23221 22233556667778888887766543211 0
Q ss_pred ---------------CC-CHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 016973 67 ---------------PS-MSKAYWRKATACMKLEEYETAKVALEKGA 97 (379)
Q Consensus 67 ---------------p~-~~~a~~~la~~~~~lg~y~~A~~~~~~a~ 97 (379)
.. -...|-..+..|...|+|+-|.+.|.++-
T Consensus 746 kew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~ 792 (1636)
T KOG3616|consen 746 KEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD 792 (1636)
T ss_pred hhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc
Confidence 01 11233446788888888888888776653
No 482
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=50.09 E-value=52 Score=24.04 Aligned_cols=16 Identities=25% Similarity=0.370 Sum_probs=7.5
Q ss_pred HccCHHHHHHHHHHHH
Q 016973 48 KLQNFTEAVADANRAI 63 (379)
Q Consensus 48 ~lg~~~eAl~~~~~Al 63 (379)
..|++++|+.+|..++
T Consensus 20 ~~g~~~eAl~~Y~~a~ 35 (77)
T smart00745 20 EAGDYEEALELYKKAI 35 (77)
T ss_pred HcCCHHHHHHHHHHHH
Confidence 3455555554444443
No 483
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=50.04 E-value=18 Score=38.49 Aligned_cols=71 Identities=18% Similarity=0.062 Sum_probs=60.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 016973 10 KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (379)
Q Consensus 10 ~~~~~~g~y~~Al~~y~~al~~~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~~~ 80 (379)
+.+...++|..++.-.+-++...|....+++.|+.||..+++++-|++++.....+.|.+..+--.....+
T Consensus 101 ~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk 171 (748)
T KOG4151|consen 101 YMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELK 171 (748)
T ss_pred HhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Confidence 45567889999999999999999999999999999999999999999998888888898855555444433
No 484
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=49.89 E-value=54 Score=23.90 Aligned_cols=14 Identities=29% Similarity=0.377 Sum_probs=6.4
Q ss_pred cCHHHHHHHHHHHH
Q 016973 50 QNFTEAVADANRAI 63 (379)
Q Consensus 50 g~~~eAl~~~~~Al 63 (379)
|+|++|+..|..|+
T Consensus 20 g~~~~Al~~Y~~a~ 33 (75)
T cd02656 20 GNYEEALELYKEAL 33 (75)
T ss_pred CCHHHHHHHHHHHH
Confidence 44444444444433
No 485
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.77 E-value=1.4e+02 Score=29.13 Aligned_cols=112 Identities=13% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------------------------HHHHHHHHHHHHHccCH
Q 016973 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNS---------------------------------AELFADRAQASIKLQNF 52 (379)
Q Consensus 6 ~~~g~~~~~~g~y~~Al~~y~~al~~~p~~---------------------------------~~~~~~ra~~~~~lg~~ 52 (379)
.+.|..++-.++|.+....|+.+=...... ..+.+.+|.-|+...++
T Consensus 62 L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g~~YE~~~~n~YkaLNYm~~nD~ 141 (449)
T COG3014 62 LQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGGNIYEGVLINYYKALNYMLLNDS 141 (449)
T ss_pred hhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCchhHHHHHHHHHHHhhHHHhcch
Q ss_pred HHHHHHHHHHHHhCCC-----------------------------------CHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 016973 53 TEAVADANRAIELEPS-----------------------------------MSKAYWRKATACMKLEEYETAKVALEKGA 97 (379)
Q Consensus 53 ~eAl~~~~~Al~l~p~-----------------------------------~~~a~~~la~~~~~lg~y~~A~~~~~~a~ 97 (379)
+.|+--+.+|.+.... .-..|..++..|..-.++-.+...|..++
T Consensus 142 ~~ArVEfnRan~rQ~~AKe~~~~ei~ka~~e~ds~k~~~N~~~~~ae~s~~i~n~Y~ny~~~yea~~~l~npYv~Yl~~l 221 (449)
T COG3014 142 AKARVEFNRANERQRRAKEFYYEEVQKAIKEIDSSKHNINMERSRAEVSEILNNTYSNYLDKYEAYQGLLNPYVSYLSGL 221 (449)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHH
Q ss_pred hcCCCChHHHHHHHHHHHHHH
Q 016973 98 SLAPGDSRFTNLIKECEERIA 118 (379)
Q Consensus 98 ~l~p~~~~~~~~l~~~~~~l~ 118 (379)
-..|++ ++......+.+.++
T Consensus 222 f~a~n~-dv~kg~~~~~e~~g 241 (449)
T COG3014 222 FYALNG-DVNKGLGYLNEAYG 241 (449)
T ss_pred hcccCc-cHhHHHHHHHHHhc
No 486
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=49.53 E-value=29 Score=33.79 Aligned_cols=58 Identities=14% Similarity=0.147 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHhccCHHHHHHHHHH
Q 016973 38 LFADRAQASIKLQNFTEAVADANRAIELEP--------SMSKAYWRKATACMKLEEYETAKVALEK 95 (379)
Q Consensus 38 ~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p--------~~~~a~~~la~~~~~lg~y~~A~~~~~~ 95 (379)
=++..|.-++.+++|+.|...|..|..+.. .+..++|.+|.+++.++++..++-.+..
T Consensus 43 ~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~nal 108 (400)
T KOG4563|consen 43 ELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGNAL 108 (400)
T ss_pred HHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 356677778889999999999999998753 4678999999999999999988866544
No 487
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.44 E-value=1.2e+02 Score=33.88 Aligned_cols=87 Identities=18% Similarity=0.231 Sum_probs=63.1
Q ss_pred HHHHHHHcCCHHHHHHHHHH------HH--------------Hh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 016973 8 KAKEAFIDDYFELAYDLYSQ------AI--------------EI--SPNSAELFADRAQASIKLQNFTEAVADANRAIEL 65 (379)
Q Consensus 8 ~g~~~~~~g~y~~Al~~y~~------al--------------~~--~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l 65 (379)
.|+.+...+-|++|...|.+ |+ +. .-+.+..|..+|.+..+.|...+|++-|-+|
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika--- 1130 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA--- 1130 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc---
Confidence 45566666666666666543 11 11 1234778888999999999999999988776
Q ss_pred CCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 016973 66 EPSMSKAYWRKATACMKLEEYETAKVALEKGASL 99 (379)
Q Consensus 66 ~p~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~l 99 (379)
+++..|...-.+..+.|.|++-+.++.-|-+-
T Consensus 1131 --dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1131 --DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred --CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 67788888888888999999888888766553
No 488
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=49.30 E-value=1.4e+02 Score=24.26 Aligned_cols=80 Identities=11% Similarity=0.015 Sum_probs=53.5
Q ss_pred CCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCHHH
Q 016973 16 DYFELAYDLYSQAIEISPNS-----AELFADRAQASIKLQNFTEAVADANRAIE--LEPSMSKAYWRKATACMKLEEYET 88 (379)
Q Consensus 16 g~y~~Al~~y~~al~~~p~~-----~~~~~~ra~~~~~lg~~~eAl~~~~~Al~--l~p~~~~a~~~la~~~~~lg~y~~ 88 (379)
+.-..-..++.+++....++ -.-|+.+-..|..+-. .+...|..+.. +.-..+..|...|..+...|++.+
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~ 117 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKK 117 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHH
Confidence 33344456777777764433 2223344444444333 77777777665 456789999999999999999999
Q ss_pred HHHHHHHHH
Q 016973 89 AKVALEKGA 97 (379)
Q Consensus 89 A~~~~~~a~ 97 (379)
|.+.|+.++
T Consensus 118 A~~I~~~Gi 126 (126)
T PF08311_consen 118 ADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhC
Confidence 999999874
No 489
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=49.30 E-value=90 Score=30.68 Aligned_cols=88 Identities=15% Similarity=0.070 Sum_probs=58.6
Q ss_pred HcCCHHHHHHHHHHHHHh-----CC----CCHHHH----HHHHHHHHHccCHHHHHHHHHHHHHh--CCC--------CH
Q 016973 14 IDDYFELAYDLYSQAIEI-----SP----NSAELF----ADRAQASIKLQNFTEAVADANRAIEL--EPS--------MS 70 (379)
Q Consensus 14 ~~g~y~~Al~~y~~al~~-----~p----~~~~~~----~~ra~~~~~lg~~~eAl~~~~~Al~l--~p~--------~~ 70 (379)
.+....++-+.+.++... .| ...... ..+-.+|+++++++-+...+. |.+. .|+ ..
T Consensus 142 ~~d~l~~~sr~l~R~Fn~il~dR~p~ln~skk~g~y~iaNlL~~iY~Rl~~~~l~~n~lk-a~~~vs~~Di~~~~~sq~v 220 (413)
T COG5600 142 NQDNLSKISRLLTRMFNSILNDRSPALNPSKKVGLYYIANLLFQIYLRLGRFKLCENFLK-ASKEVSMPDISEYQKSQVV 220 (413)
T ss_pred hHhhHHHHHHHHHHHHHHhcCCcCccCChhhHHHHHHHHHHHHHHHHHhccHHHHHHHHH-hcccccccccchhhhccee
Confidence 344555666666665554 22 112222 335567888899988776553 3333 122 34
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC
Q 016973 71 KAYWRKATACMKLEEYETAKVALEKGASLAPG 102 (379)
Q Consensus 71 ~a~~~la~~~~~lg~y~~A~~~~~~a~~l~p~ 102 (379)
..+|.+|++|+...++.+|...+..|+...|.
T Consensus 221 ~f~YYLG~~~l~~en~heA~~~L~~aFl~c~~ 252 (413)
T COG5600 221 VFHYYLGIYYLLNENFHEAFLHLNEAFLQCPW 252 (413)
T ss_pred ehhhHHHHHHHHHHhHHHHHHHHHHHHHhChh
Confidence 57899999999999999999999999988876
No 490
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=49.25 E-value=1.1e+02 Score=22.78 Aligned_cols=25 Identities=28% Similarity=0.177 Sum_probs=11.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Q 016973 39 FADRAQASIKLQNFTEAVADANRAI 63 (379)
Q Consensus 39 ~~~ra~~~~~lg~~~eAl~~~~~Al 63 (379)
+..+|.-+=+.|+|++|+.+|..++
T Consensus 9 ~a~~Ave~D~~g~y~eA~~~Y~~ai 33 (76)
T cd02681 9 FARLAVQRDQEGRYSEAVFYYKEAA 33 (76)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3444444444455555555544444
No 491
>PF15469 Sec5: Exocyst complex component Sec5
Probab=49.15 E-value=1.6e+02 Score=25.45 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=14.0
Q ss_pred HHccCHHHHHHHHHHHHHhC
Q 016973 47 IKLQNFTEAVADANRAIELE 66 (379)
Q Consensus 47 ~~lg~~~eAl~~~~~Al~l~ 66 (379)
++.|+|+.++.+|.+|..+.
T Consensus 97 i~~~dy~~~i~dY~kak~l~ 116 (182)
T PF15469_consen 97 IKKGDYDQAINDYKKAKSLF 116 (182)
T ss_pred HHcCcHHHHHHHHHHHHHHH
Confidence 45677777777777777664
No 492
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=48.40 E-value=91 Score=30.29 Aligned_cols=71 Identities=17% Similarity=0.118 Sum_probs=50.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 016973 8 KAKEAFIDDYFELAYDLYSQAIEI--SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT 78 (379)
Q Consensus 8 ~g~~~~~~g~y~~Al~~y~~al~~--~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~~~~a~~~la~ 78 (379)
++...-...-...++.....+... -.....++..||..+.++|+..+|...|++|+.+.++-.+..|.+..
T Consensus 335 RAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r 407 (415)
T COG4941 335 RAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQR 407 (415)
T ss_pred HHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 334344444455666666555554 23345667789999999999999999999999999988776665543
No 493
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=48.33 E-value=1.2e+02 Score=29.53 Aligned_cols=46 Identities=15% Similarity=0.017 Sum_probs=39.3
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCHHHHHHHHHH
Q 016973 50 QNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEK 95 (379)
Q Consensus 50 g~~~eAl~~~~~Al~l~p~~~~a~~~la~~~~~lg~y~~A~~~~~~ 95 (379)
..+-+|+-.++.++...|.+....+.+..+|..+|-...|...|..
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 4567888888889999999999999999999999999999888754
No 494
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=47.19 E-value=55 Score=31.74 Aligned_cols=93 Identities=13% Similarity=0.025 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------CHHH
Q 016973 6 EKKAKEAFIDDYFELAYDLYSQAIEI------SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS-------MSKA 72 (379)
Q Consensus 6 ~~~g~~~~~~g~y~~Al~~y~~al~~------~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p~-------~~~a 72 (379)
......|+..++|.+|+.+....+.. .+.-.+.+..=+.+|+.+.+..+|...+..|-..... .+..
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l 211 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL 211 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHh
Q 016973 73 YWRKATACMKLEEYETAKVALEKGAS 98 (379)
Q Consensus 73 ~~~la~~~~~lg~y~~A~~~~~~a~~ 98 (379)
-+.-|+.+..-.+|..|..+|-+|++
T Consensus 212 DLqSGIlha~ekDykTafSYFyEAfE 237 (411)
T KOG1463|consen 212 DLQSGILHAAEKDYKTAFSYFYEAFE 237 (411)
T ss_pred HHhccceeecccccchHHHHHHHHHc
No 495
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=47.14 E-value=1.9e+02 Score=27.37 Aligned_cols=114 Identities=11% Similarity=0.096 Sum_probs=73.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------HHHHHHHH----HHHHHccCHHHHHHHHHHHHHhCCCCH
Q 016973 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS----------AELFADRA----QASIKLQNFTEAVADANRAIELEPSMS 70 (379)
Q Consensus 5 l~~~g~~~~~~g~y~~Al~~y~~al~~~p~~----------~~~~~~ra----~~~~~lg~~~eAl~~~~~Al~l~p~~~ 70 (379)
+-..++.++...||..|+..++++++.-..+ .++-..++ .++..++++.+++...-+-.+.-...+
T Consensus 38 Le~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklP 117 (309)
T PF07163_consen 38 LEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLP 117 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCC
Confidence 3445788999999999999999999873111 12222222 346678999999988877766655555
Q ss_pred HHHHHHHH-HHHhccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 016973 71 KAYWRKAT-ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (379)
Q Consensus 71 ~a~~~la~-~~~~lg~y~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~ 119 (379)
.-.+.+.+ .|...++.....+.-.. --.+|+|.........++..+..
T Consensus 118 pkIleLCILLysKv~Ep~amlev~~~-WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 118 PKILELCILLYSKVQEPAAMLEVASA-WLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHH-HHhCcccCCchhhHHHHHHHHHH
Confidence 44455555 55678888776665443 33567777655554444444444
No 496
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=47.11 E-value=1e+02 Score=21.86 Aligned_cols=52 Identities=15% Similarity=0.080 Sum_probs=29.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHH--HHHHccCHHHHHH
Q 016973 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSA----ELFADRAQ--ASIKLQNFTEAVA 57 (379)
Q Consensus 6 ~~~g~~~~~~g~y~~Al~~y~~al~~~p~~~----~~~~~ra~--~~~~lg~~~eAl~ 57 (379)
+..|..++..|+|=+|-+.+..+-...+... ..+.++|. .+.+.|+...|..
T Consensus 3 ~~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~ 60 (62)
T PF03745_consen 3 LEEGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARR 60 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHH
T ss_pred HHHHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 5567778888888888888877776544331 11222222 2344466666554
No 497
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=46.77 E-value=2.3e+02 Score=28.38 Aligned_cols=31 Identities=19% Similarity=0.186 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 016973 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPN 34 (379)
Q Consensus 4 ~l~~~g~~~~~~g~y~~Al~~y~~al~~~p~ 34 (379)
-++-.|.....+++|..|.+++-+|+...|+
T Consensus 249 Y~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 249 YLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 3444444455555555555555555555544
No 498
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.74 E-value=1.7e+02 Score=28.32 Aligned_cols=83 Identities=17% Similarity=0.155 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHhccCHHHHHHHHHHHHh--cCCCChH
Q 016973 36 AELFADRAQASIKLQNFTEAVADANRAIELEP--------SMSKAYWRKATACMKLEEYETAKVALEKGAS--LAPGDSR 105 (379)
Q Consensus 36 ~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~p--------~~~~a~~~la~~~~~lg~y~~A~~~~~~a~~--l~p~~~~ 105 (379)
......+|.+|.+-+++..|.+.+. ++.++. .-...+.++|.+|...++-.+|..+..++-- .+..|..
T Consensus 103 ~~irl~LAsiYE~Eq~~~~aaq~L~-~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~ 181 (399)
T KOG1497|consen 103 ASIRLHLASIYEKEQNWRDAAQVLV-GIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQ 181 (399)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHh-ccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHH
Confidence 3455667888888888887766553 233332 1234677889999999988888887776633 3456777
Q ss_pred HHHHHHHHHHHHHh
Q 016973 106 FTNLIKECEERIAE 119 (379)
Q Consensus 106 ~~~~l~~~~~~l~~ 119 (379)
+...+..|+.+.-.
T Consensus 182 Lqie~kvc~ARvlD 195 (399)
T KOG1497|consen 182 LQIEYKVCYARVLD 195 (399)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777766544
No 499
>PRK02955 small acid-soluble spore protein SspI; Provisional
Probab=46.32 E-value=16 Score=26.37 Aligned_cols=25 Identities=28% Similarity=0.587 Sum_probs=22.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHhhhhh
Q 016973 320 ALNKFFQEIYADADEDTRRAMKKSF 344 (379)
Q Consensus 320 ~l~~~f~~iY~~~d~d~kram~Ks~ 344 (379)
+|--||..+|+++|+..|..|+.+-
T Consensus 39 GLGVlFE~~W~~~~~~ek~~m~~~l 63 (68)
T PRK02955 39 GLGVLFEVIWKNADENEKDEMLETL 63 (68)
T ss_pred cchhHHHHHHHhcCHHHHHHHHHHH
Confidence 3788999999999999999999764
No 500
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=45.80 E-value=1.7e+02 Score=27.86 Aligned_cols=94 Identities=12% Similarity=0.036 Sum_probs=70.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCCH--HHHH
Q 016973 8 KAKEAFIDDYFELAYDLYSQAIEI------SPNSAELFADRAQASIKLQNFTEAVADANRAIELE-----PSMS--KAYW 74 (379)
Q Consensus 8 ~g~~~~~~g~y~~Al~~y~~al~~------~p~~~~~~~~ra~~~~~lg~~~eAl~~~~~Al~l~-----p~~~--~a~~ 74 (379)
+...+++.|.|.+|+.+.+..+.. .++-...+..-+.+|....+..++..-+..|-.+. |..- ..-+
T Consensus 131 li~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL 210 (421)
T COG5159 131 LIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDL 210 (421)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHH
Confidence 456789999999999998877765 34446777788888999999888888777666553 4332 3334
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCC
Q 016973 75 RKATACMKLEEYETAKVALEKGASLAP 101 (379)
Q Consensus 75 ~la~~~~~lg~y~~A~~~~~~a~~l~p 101 (379)
.-|+.+..-.+|.-|..+|-.+++-..
T Consensus 211 ~sGIlhcdd~dyktA~SYF~Ea~Egft 237 (421)
T COG5159 211 LSGILHCDDRDYKTASSYFIEALEGFT 237 (421)
T ss_pred hccceeeccccchhHHHHHHHHHhccc
Confidence 457777888899999999988887543
Done!