Query 016974
Match_columns 379
No_of_seqs 302 out of 3108
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 04:30:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016974.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016974hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0286 G-protein beta subunit 100.0 8.9E-65 1.9E-69 413.0 38.8 342 10-371 2-343 (343)
2 KOG0271 Notchless-like WD40 re 100.0 5.1E-55 1.1E-59 367.8 28.3 292 58-371 106-479 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 1.1E-52 2.3E-57 357.9 25.1 284 64-371 172-458 (459)
4 KOG0279 G protein beta subunit 100.0 4.1E-45 9E-50 296.3 32.9 298 57-374 5-314 (315)
5 KOG0295 WD40 repeat-containing 100.0 2.9E-45 6.3E-50 307.1 28.2 288 61-371 102-404 (406)
6 KOG0272 U4/U6 small nuclear ri 100.0 4.3E-45 9.4E-50 311.5 23.1 250 56-325 206-458 (459)
7 KOG0271 Notchless-like WD40 re 100.0 4.3E-44 9.4E-49 301.8 24.0 258 100-375 106-441 (480)
8 KOG0265 U5 snRNP-specific prot 100.0 4.7E-42 1E-46 281.2 28.9 293 60-372 40-337 (338)
9 KOG0645 WD40 repeat protein [G 100.0 3E-41 6.6E-46 272.8 31.4 294 57-373 4-311 (312)
10 KOG0285 Pleiotropic regulator 100.0 7.8E-42 1.7E-46 286.0 27.6 296 56-373 140-439 (460)
11 KOG0315 G-protein beta subunit 100.0 3.6E-41 7.8E-46 269.3 29.5 277 80-374 11-289 (311)
12 KOG0263 Transcription initiati 100.0 1E-42 2.3E-47 318.2 23.5 281 59-374 370-650 (707)
13 KOG0284 Polyadenylation factor 100.0 4.8E-42 1E-46 291.7 17.2 284 67-374 96-381 (464)
14 KOG0318 WD40 repeat stress pro 100.0 5.4E-39 1.2E-43 281.1 35.0 306 56-374 179-561 (603)
15 KOG0282 mRNA splicing factor [ 100.0 9.8E-42 2.1E-46 295.6 17.7 294 59-371 206-503 (503)
16 KOG0273 Beta-transducin family 100.0 5.6E-40 1.2E-44 283.8 28.3 287 62-374 173-483 (524)
17 KOG0266 WD40 repeat-containing 100.0 1.8E-39 3.9E-44 303.2 33.2 296 60-374 151-455 (456)
18 KOG0279 G protein beta subunit 100.0 1.2E-39 2.6E-44 264.6 27.7 255 58-327 54-313 (315)
19 cd00200 WD40 WD40 domain, foun 100.0 3.5E-38 7.6E-43 277.8 38.2 287 61-371 3-289 (289)
20 KOG0273 Beta-transducin family 100.0 9.3E-39 2E-43 276.2 30.5 279 68-373 236-523 (524)
21 PLN00181 protein SPA1-RELATED; 100.0 5E-38 1.1E-42 314.0 40.1 290 63-372 479-792 (793)
22 KOG0288 WD40 repeat protein Ti 100.0 6E-40 1.3E-44 279.3 21.8 290 59-371 167-459 (459)
23 KOG0291 WD40-repeat-containing 100.0 2.1E-37 4.5E-42 281.6 35.2 302 57-374 135-509 (893)
24 KOG0291 WD40-repeat-containing 100.0 4.4E-37 9.5E-42 279.5 34.7 299 56-374 296-613 (893)
25 KOG0293 WD40 repeat-containing 100.0 1.8E-38 3.9E-43 270.3 23.7 295 61-377 218-517 (519)
26 KOG0315 G-protein beta subunit 100.0 2.1E-36 4.5E-41 242.0 29.2 274 56-352 29-309 (311)
27 KOG0316 Conserved WD40 repeat- 100.0 5.5E-37 1.2E-41 243.5 25.5 284 61-371 11-297 (307)
28 KOG0276 Vesicle coat complex C 100.0 3.3E-37 7.1E-42 275.0 27.0 287 60-369 6-295 (794)
29 KOG0319 WD40-repeat-containing 100.0 4.5E-37 9.8E-42 278.9 28.2 302 55-371 311-617 (775)
30 KOG0296 Angio-associated migra 100.0 2.5E-36 5.5E-41 253.6 30.3 288 60-373 57-398 (399)
31 KOG0263 Transcription initiati 100.0 1.4E-37 3.1E-42 284.6 23.5 209 59-282 443-651 (707)
32 KOG0286 G-protein beta subunit 100.0 5.5E-36 1.2E-40 244.8 30.2 238 68-325 98-343 (343)
33 KOG0319 WD40-repeat-containing 100.0 1.1E-36 2.4E-41 276.4 27.7 306 58-374 138-578 (775)
34 KOG0300 WD40 repeat-containing 100.0 2.5E-36 5.3E-41 249.6 27.2 302 59-374 140-477 (481)
35 KOG0281 Beta-TrCP (transducin 100.0 2.8E-38 6.1E-43 263.9 14.4 278 66-374 196-478 (499)
36 KOG0643 Translation initiation 100.0 1.8E-35 3.9E-40 238.9 25.7 292 62-374 5-318 (327)
37 KOG0281 Beta-TrCP (transducin 100.0 4.6E-37 1E-41 256.6 14.2 252 55-330 225-480 (499)
38 KOG0278 Serine/threonine kinas 100.0 5.9E-36 1.3E-40 239.6 18.8 287 62-374 9-298 (334)
39 KOG0313 Microtubule binding pr 100.0 8.5E-35 1.8E-39 245.6 26.3 291 65-373 103-418 (423)
40 KOG0318 WD40 repeat stress pro 100.0 8.1E-34 1.7E-38 248.8 33.3 292 59-374 51-351 (603)
41 KOG0284 Polyadenylation factor 100.0 1.2E-36 2.6E-41 258.8 14.8 245 62-326 133-379 (464)
42 KOG0292 Vesicle coat complex C 100.0 6E-35 1.3E-39 269.6 26.9 291 62-374 4-322 (1202)
43 KOG0306 WD40-repeat-containing 100.0 1.3E-34 2.8E-39 263.3 28.4 292 61-374 367-665 (888)
44 KOG0276 Vesicle coat complex C 100.0 6.9E-35 1.5E-39 260.2 26.0 248 59-323 47-295 (794)
45 KOG0289 mRNA splicing factor [ 100.0 6.4E-34 1.4E-38 244.0 30.0 283 69-372 221-505 (506)
46 KOG0299 U3 snoRNP-associated p 100.0 1.5E-34 3.3E-39 249.7 26.0 283 60-361 135-443 (479)
47 KOG0295 WD40 repeat-containing 100.0 3.6E-35 7.8E-40 246.6 21.3 248 59-325 142-404 (406)
48 KOG0310 Conserved WD40 repeat- 100.0 2.3E-34 5E-39 250.3 26.3 279 68-370 27-306 (487)
49 KOG0640 mRNA cleavage stimulat 100.0 3.9E-34 8.4E-39 235.9 25.8 299 60-371 105-424 (430)
50 KOG0285 Pleiotropic regulator 100.0 1.2E-34 2.7E-39 242.9 21.5 246 103-374 145-390 (460)
51 KOG0292 Vesicle coat complex C 100.0 5.7E-34 1.2E-38 263.2 27.4 252 59-325 43-319 (1202)
52 KOG0283 WD40 repeat-containing 100.0 5.2E-34 1.1E-38 263.4 26.4 296 60-374 259-577 (712)
53 KOG1446 Histone H3 (Lys4) meth 100.0 2.6E-32 5.7E-37 226.0 33.8 290 62-374 9-304 (311)
54 PLN00181 protein SPA1-RELATED; 100.0 2.7E-32 5.8E-37 272.9 39.9 268 88-373 457-738 (793)
55 KOG0266 WD40 repeat-containing 100.0 4.4E-33 9.5E-38 260.2 31.1 246 109-374 159-410 (456)
56 KOG0277 Peroxisomal targeting 100.0 1.4E-34 3.1E-39 232.2 18.0 254 55-325 49-307 (311)
57 KOG0265 U5 snRNP-specific prot 100.0 2E-33 4.3E-38 230.7 24.9 252 104-374 42-297 (338)
58 KOG0772 Uncharacterized conser 100.0 1.6E-33 3.4E-38 246.4 24.6 304 59-370 159-484 (641)
59 KOG0277 Peroxisomal targeting 100.0 2.1E-33 4.5E-38 225.5 22.6 281 71-372 12-308 (311)
60 KOG0275 Conserved WD40 repeat- 100.0 2.2E-34 4.9E-39 238.7 17.5 285 65-371 211-507 (508)
61 KOG0306 WD40-repeat-containing 100.0 1.8E-32 3.8E-37 249.5 30.0 204 154-372 369-579 (888)
62 KOG0316 Conserved WD40 repeat- 100.0 9.8E-33 2.1E-37 219.4 22.3 247 101-374 9-258 (307)
63 KOG0274 Cdc4 and related F-box 100.0 2.8E-32 6E-37 254.5 29.2 279 62-374 202-483 (537)
64 KOG0305 Anaphase promoting com 100.0 3.3E-32 7.2E-37 245.3 28.2 275 72-374 182-462 (484)
65 KOG1407 WD40 repeat protein [F 100.0 7.9E-32 1.7E-36 217.2 26.4 286 61-373 14-311 (313)
66 KOG0645 WD40 repeat protein [G 100.0 4.8E-31 1E-35 213.8 30.1 246 102-373 7-261 (312)
67 KOG0641 WD40 repeat protein [G 100.0 1.6E-30 3.4E-35 205.8 32.3 301 57-374 23-350 (350)
68 KOG0268 Sof1-like rRNA process 100.0 2E-33 4.4E-38 236.0 16.7 286 61-374 60-346 (433)
69 PTZ00421 coronin; Provisional 100.0 7.7E-31 1.7E-35 244.5 35.6 272 69-353 22-313 (493)
70 KOG0973 Histone transcription 100.0 9E-32 1.9E-36 254.7 29.0 297 62-374 7-356 (942)
71 KOG2096 WD40 repeat protein [G 100.0 4.5E-31 9.7E-36 218.6 26.8 299 59-371 78-400 (420)
72 KOG0313 Microtubule binding pr 100.0 2E-31 4.3E-36 225.3 24.0 254 58-326 135-417 (423)
73 KOG0282 mRNA splicing factor [ 100.0 1.3E-32 2.7E-37 239.2 15.8 257 99-374 204-463 (503)
74 PTZ00420 coronin; Provisional 100.0 1.5E-29 3.2E-34 237.0 36.1 258 84-355 49-318 (568)
75 cd00200 WD40 WD40 domain, foun 100.0 8.2E-30 1.8E-34 224.3 31.8 248 103-374 3-250 (289)
76 KOG0274 Cdc4 and related F-box 100.0 1.1E-30 2.4E-35 243.8 27.1 252 57-335 238-490 (537)
77 KOG0647 mRNA export protein (c 100.0 2.1E-30 4.5E-35 213.1 25.0 278 66-364 26-315 (347)
78 KOG0278 Serine/threonine kinas 100.0 3.9E-32 8.5E-37 217.7 14.5 250 59-330 51-300 (334)
79 KOG0301 Phospholipase A2-activ 100.0 2.2E-30 4.9E-35 234.1 27.2 280 59-374 6-289 (745)
80 KOG0296 Angio-associated migra 100.0 3.1E-30 6.6E-35 217.1 25.5 252 60-327 99-398 (399)
81 PTZ00421 coronin; Provisional 100.0 1.4E-29 2.9E-34 236.1 31.6 251 112-374 23-291 (493)
82 PTZ00420 coronin; Provisional 100.0 2.1E-29 4.6E-34 236.0 32.4 237 127-374 50-294 (568)
83 KOG0308 Conserved WD40 repeat- 100.0 8.6E-31 1.9E-35 235.2 19.9 281 77-374 35-328 (735)
84 KOG0264 Nucleosome remodeling 100.0 7.3E-30 1.6E-34 220.7 24.1 264 59-327 116-404 (422)
85 KOG0310 Conserved WD40 repeat- 100.0 5.9E-30 1.3E-34 222.9 22.9 244 61-325 62-307 (487)
86 KOG1446 Histone H3 (Lys4) meth 100.0 3.3E-28 7.2E-33 201.8 30.9 252 103-374 8-263 (311)
87 KOG1332 Vesicle coat complex C 100.0 6.7E-30 1.4E-34 204.3 17.5 257 61-327 5-286 (299)
88 KOG0264 Nucleosome remodeling 100.0 2.4E-29 5.2E-34 217.5 21.4 264 107-374 122-405 (422)
89 KOG1408 WD40 repeat protein [F 100.0 8.3E-29 1.8E-33 224.6 25.3 294 62-373 364-713 (1080)
90 KOG0772 Uncharacterized conser 100.0 8.1E-29 1.8E-33 217.0 22.7 272 102-378 160-450 (641)
91 KOG4283 Transcription-coupled 100.0 3.8E-28 8.3E-33 199.2 25.0 292 63-372 39-364 (397)
92 KOG1036 Mitotic spindle checkp 100.0 1.2E-27 2.7E-32 197.5 26.8 272 67-363 13-294 (323)
93 KOG0293 WD40 repeat-containing 100.0 1.6E-28 3.4E-33 209.8 20.6 252 101-374 216-471 (519)
94 KOG0641 WD40 repeat protein [G 100.0 9.9E-27 2.1E-31 184.3 27.2 255 57-326 79-348 (350)
95 KOG0275 Conserved WD40 repeat- 100.0 1.4E-28 3E-33 204.3 17.4 253 110-374 214-468 (508)
96 KOG0269 WD40 repeat-containing 100.0 1.2E-28 2.6E-33 225.5 18.4 289 62-370 37-337 (839)
97 KOG0643 Translation initiation 100.0 2E-27 4.3E-32 192.5 22.4 258 58-325 43-315 (327)
98 KOG0639 Transducin-like enhanc 100.0 9.6E-28 2.1E-32 209.8 21.5 282 65-372 417-703 (705)
99 KOG0268 Sof1-like rRNA process 100.0 7.9E-29 1.7E-33 208.5 14.2 251 56-330 98-348 (433)
100 KOG0640 mRNA cleavage stimulat 100.0 5.7E-28 1.2E-32 199.6 17.8 225 103-335 106-343 (430)
101 KOG1332 Vesicle coat complex C 100.0 7E-28 1.5E-32 192.8 17.3 255 108-373 10-286 (299)
102 KOG0305 Anaphase promoting com 100.0 5.3E-27 1.1E-31 211.8 24.7 242 66-328 216-462 (484)
103 KOG0288 WD40 repeat protein Ti 100.0 9.5E-28 2.1E-32 205.1 18.5 244 59-324 211-458 (459)
104 KOG1063 RNA polymerase II elon 100.0 2.1E-26 4.6E-31 208.5 27.4 314 50-373 37-391 (764)
105 KOG1407 WD40 repeat protein [F 100.0 8.8E-27 1.9E-31 188.2 22.0 245 104-371 15-259 (313)
106 KOG0299 U3 snoRNP-associated p 100.0 8.5E-27 1.8E-31 201.9 22.8 233 64-316 199-444 (479)
107 KOG0294 WD40 repeat-containing 100.0 4E-26 8.6E-31 189.1 25.6 245 102-375 36-283 (362)
108 KOG0308 Conserved WD40 repeat- 100.0 2.5E-27 5.5E-32 213.0 20.1 303 59-374 65-394 (735)
109 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 6.9E-25 1.5E-29 195.6 35.3 272 80-374 2-280 (300)
110 KOG1063 RNA polymerase II elon 100.0 2.7E-26 5.8E-31 207.8 25.4 301 62-375 262-650 (764)
111 KOG0973 Histone transcription 100.0 1.1E-26 2.5E-31 220.3 23.9 258 110-374 14-313 (942)
112 KOG0294 WD40 repeat-containing 100.0 4.3E-26 9.3E-31 188.9 24.4 246 58-329 34-283 (362)
113 KOG0289 mRNA splicing factor [ 100.0 3.7E-26 8E-31 196.6 23.6 248 60-325 254-504 (506)
114 KOG0646 WD40 repeat protein [G 100.0 3E-26 6.4E-31 198.9 22.7 271 84-375 12-309 (476)
115 KOG1539 WD repeat protein [Gen 100.0 3.9E-25 8.4E-30 204.1 30.8 305 59-374 194-607 (910)
116 KOG0300 WD40 repeat-containing 100.0 1.4E-26 3.1E-31 191.9 19.0 254 58-328 181-477 (481)
117 KOG2445 Nuclear pore complex c 100.0 2.4E-25 5.3E-30 183.9 25.9 263 63-326 9-317 (361)
118 KOG0650 WD40 repeat nucleolar 99.9 8.3E-26 1.8E-30 201.5 24.9 306 50-371 383-733 (733)
119 KOG1274 WD40 repeat protein [G 99.9 2.6E-25 5.6E-30 207.4 29.1 279 64-370 10-297 (933)
120 KOG0283 WD40 repeat-containing 99.9 1.8E-26 3.9E-31 213.7 21.0 251 107-374 265-533 (712)
121 KOG2055 WD40 repeat protein [G 99.9 2.3E-25 5E-30 193.1 25.4 287 67-374 213-513 (514)
122 KOG1539 WD repeat protein [Gen 99.9 9.3E-25 2E-29 201.6 29.6 302 60-371 237-646 (910)
123 KOG1273 WD40 repeat protein [G 99.9 3.1E-25 6.7E-30 183.8 23.5 289 70-374 26-323 (405)
124 KOG0301 Phospholipase A2-activ 99.9 1.5E-25 3.2E-30 203.0 23.2 238 59-327 49-288 (745)
125 KOG0321 WD40 repeat-containing 99.9 1.1E-25 2.4E-30 202.1 22.0 286 79-374 64-392 (720)
126 KOG2106 Uncharacterized conser 99.9 9.4E-24 2E-28 185.0 31.9 288 60-374 147-478 (626)
127 KOG0267 Microtubule severing p 99.9 4E-27 8.7E-32 214.0 10.9 255 81-365 6-260 (825)
128 KOG2106 Uncharacterized conser 99.9 1.9E-23 4.2E-28 183.1 32.3 282 61-374 239-522 (626)
129 KOG1034 Transcriptional repres 99.9 1.2E-24 2.6E-29 181.3 23.4 297 61-372 32-382 (385)
130 KOG0647 mRNA export protein (c 99.9 1.3E-24 2.9E-29 179.1 22.9 252 107-377 25-285 (347)
131 KOG2048 WD40 repeat protein [G 99.9 3.1E-23 6.7E-28 187.7 33.2 218 55-282 56-277 (691)
132 KOG4378 Nuclear protein COP1 [ 99.9 2.9E-25 6.3E-30 194.0 18.5 264 70-354 37-304 (673)
133 KOG4328 WD40 protein [Function 99.9 6E-24 1.3E-28 184.2 24.9 299 59-372 178-494 (498)
134 KOG4283 Transcription-coupled 99.9 5.3E-24 1.2E-28 175.0 22.9 217 107-330 41-279 (397)
135 KOG0646 WD40 repeat protein [G 99.9 1.9E-24 4.1E-29 187.8 20.2 232 67-310 81-332 (476)
136 KOG1408 WD40 repeat protein [F 99.9 1.4E-23 2.9E-28 191.0 26.1 296 71-374 328-672 (1080)
137 KOG1274 WD40 repeat protein [G 99.9 2.2E-23 4.7E-28 194.7 27.7 250 107-374 11-263 (933)
138 KOG0267 Microtubule severing p 99.9 1.3E-25 2.8E-30 204.3 10.8 239 61-319 22-260 (825)
139 KOG0302 Ribosome Assembly prot 99.9 2.4E-23 5.2E-28 176.4 22.4 253 108-367 150-433 (440)
140 KOG0639 Transducin-like enhanc 99.9 2.4E-24 5.2E-29 188.6 16.8 244 108-372 418-662 (705)
141 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 8.1E-22 1.8E-26 175.8 33.8 265 60-353 24-300 (300)
142 KOG1036 Mitotic spindle checkp 99.9 3.3E-23 7.2E-28 171.4 22.5 245 109-377 13-266 (323)
143 KOG0302 Ribosome Assembly prot 99.9 1.7E-23 3.6E-28 177.4 20.9 211 62-281 146-379 (440)
144 KOG0269 WD40 repeat-containing 99.9 1.9E-24 4.1E-29 198.1 15.8 247 112-374 42-297 (839)
145 KOG0270 WD40 repeat-containing 99.9 7.9E-24 1.7E-28 182.9 18.6 246 71-331 177-453 (463)
146 KOG2445 Nuclear pore complex c 99.9 1.4E-22 3.1E-27 167.6 25.2 260 107-373 11-318 (361)
147 KOG0270 WD40 repeat-containing 99.9 3.1E-23 6.7E-28 179.2 20.5 242 121-375 192-451 (463)
148 KOG2048 WD40 repeat protein [G 99.9 1.6E-21 3.5E-26 176.7 31.8 295 59-374 17-320 (691)
149 KOG0321 WD40 repeat-containing 99.9 3.2E-23 6.9E-28 186.4 19.7 247 121-374 64-348 (720)
150 KOG2096 WD40 repeat protein [G 99.9 1.6E-22 3.5E-27 168.0 22.0 260 104-373 81-360 (420)
151 KOG1009 Chromatin assembly com 99.9 7.9E-22 1.7E-26 168.8 23.6 293 67-374 13-373 (434)
152 KOG1334 WD40 repeat protein [G 99.9 2.8E-23 6.2E-28 181.4 14.6 303 60-374 135-467 (559)
153 KOG0307 Vesicle coat complex C 99.9 2.8E-23 6.2E-28 198.3 15.1 289 72-375 11-329 (1049)
154 KOG1517 Guanine nucleotide bin 99.9 1.5E-21 3.3E-26 184.7 26.3 306 62-374 1059-1382(1387)
155 KOG2919 Guanine nucleotide-bin 99.9 1.5E-21 3.3E-26 162.5 22.6 282 70-364 52-361 (406)
156 COG2319 FOG: WD40 repeat [Gene 99.9 1.4E-19 2.9E-24 168.2 38.3 291 62-374 60-360 (466)
157 KOG1007 WD repeat protein TSSC 99.9 3.4E-22 7.3E-27 164.0 17.9 288 59-374 55-362 (370)
158 KOG4328 WD40 protein [Function 99.9 6E-22 1.3E-26 171.9 20.3 269 98-376 175-453 (498)
159 KOG0307 Vesicle coat complex C 99.9 1.1E-22 2.5E-27 194.2 17.0 248 69-329 66-329 (1049)
160 KOG4227 WD40 repeat protein [G 99.9 1.1E-21 2.4E-26 167.3 20.7 303 58-374 47-388 (609)
161 KOG0322 G-protein beta subunit 99.9 4.6E-22 9.9E-27 161.3 16.2 291 62-372 9-322 (323)
162 KOG1188 WD40 repeat protein [G 99.9 2.1E-21 4.6E-26 162.8 18.7 283 80-373 41-346 (376)
163 KOG0303 Actin-binding protein 99.9 3.9E-21 8.5E-26 164.0 19.7 214 153-374 76-295 (472)
164 KOG0644 Uncharacterized conser 99.9 8.5E-23 1.8E-27 188.7 9.2 253 58-330 181-471 (1113)
165 KOG4378 Nuclear protein COP1 [ 99.9 7.5E-21 1.6E-25 166.7 19.5 268 85-374 8-281 (673)
166 COG2319 FOG: WD40 repeat [Gene 99.9 3.3E-18 7.2E-23 158.8 38.8 292 60-374 101-401 (466)
167 KOG0642 Cell-cycle nuclear pro 99.9 4.5E-21 9.8E-26 170.6 17.1 257 61-330 288-564 (577)
168 KOG1273 WD40 repeat protein [G 99.9 3E-20 6.4E-25 154.4 20.3 243 112-374 26-281 (405)
169 KOG2055 WD40 repeat protein [G 99.9 3.3E-20 7.1E-25 161.3 21.2 248 109-372 213-466 (514)
170 KOG1538 Uncharacterized conser 99.9 3.2E-20 6.9E-25 168.1 21.9 271 69-372 14-292 (1081)
171 KOG1587 Cytoplasmic dynein int 99.9 2.8E-19 6.1E-24 166.3 28.5 279 88-374 221-517 (555)
172 KOG1034 Transcriptional repres 99.9 1.6E-20 3.4E-25 156.8 15.5 252 66-326 88-382 (385)
173 KOG2919 Guanine nucleotide-bin 99.9 1.1E-19 2.3E-24 151.6 19.7 239 68-318 105-361 (406)
174 KOG0303 Actin-binding protein 99.9 9.7E-20 2.1E-24 155.6 19.1 216 62-330 76-297 (472)
175 KOG2110 Uncharacterized conser 99.8 1.9E-17 4.2E-22 140.6 31.4 237 68-326 6-247 (391)
176 KOG0642 Cell-cycle nuclear pro 99.8 3.3E-20 7.1E-25 165.2 15.3 260 104-374 289-562 (577)
177 KOG1240 Protein kinase contain 99.8 3.4E-18 7.3E-23 164.6 29.0 311 56-371 1037-1431(1431)
178 PRK11028 6-phosphogluconolacto 99.8 1.3E-17 2.9E-22 150.8 31.7 280 82-373 5-304 (330)
179 KOG0290 Conserved WD40 repeat- 99.8 5.8E-19 1.3E-23 145.3 19.6 240 65-318 94-357 (364)
180 KOG1310 WD40 repeat protein [G 99.8 1.5E-19 3.3E-24 160.4 15.7 250 60-332 43-308 (758)
181 KOG0649 WD40 repeat protein [G 99.8 7.1E-18 1.5E-22 135.6 23.7 248 112-376 13-277 (325)
182 KOG1587 Cytoplasmic dynein int 99.8 1.5E-18 3.3E-23 161.5 22.6 256 67-327 242-516 (555)
183 KOG1524 WD40 repeat-containing 99.8 7.2E-19 1.6E-23 155.8 18.9 263 65-369 12-282 (737)
184 KOG1538 Uncharacterized conser 99.8 3.7E-18 7.9E-23 154.9 19.3 249 51-326 37-292 (1081)
185 KOG0290 Conserved WD40 repeat- 99.8 1.5E-17 3.2E-22 137.1 20.4 252 112-375 47-320 (364)
186 KOG1445 Tumor-specific antigen 99.8 2.8E-18 6.1E-23 154.8 15.9 247 117-374 587-845 (1012)
187 PRK01742 tolB translocation pr 99.8 3E-17 6.6E-22 153.2 23.5 237 88-354 183-426 (429)
188 KOG0650 WD40 repeat nucleolar 99.8 2.9E-17 6.3E-22 147.4 18.8 252 102-373 393-680 (733)
189 KOG0771 Prolactin regulatory e 99.8 9.6E-18 2.1E-22 144.9 15.2 204 71-281 148-355 (398)
190 KOG1524 WD40 repeat-containing 99.8 1.3E-17 2.8E-22 147.9 15.9 207 80-323 76-282 (737)
191 KOG1963 WD40 repeat protein [G 99.8 7.9E-16 1.7E-20 144.2 28.4 296 65-375 203-540 (792)
192 KOG1517 Guanine nucleotide bin 99.8 4.7E-17 1E-21 154.7 19.9 249 69-327 1111-1381(1387)
193 KOG2111 Uncharacterized conser 99.8 3.6E-15 7.8E-20 124.6 28.6 239 70-328 8-257 (346)
194 KOG1963 WD40 repeat protein [G 99.8 7.4E-16 1.6E-20 144.4 27.5 305 57-374 47-376 (792)
195 PRK11028 6-phosphogluconolacto 99.8 4.7E-15 1E-19 134.1 31.6 252 68-327 35-304 (330)
196 KOG1009 Chromatin assembly com 99.8 3E-16 6.5E-21 134.9 21.3 255 56-324 54-369 (434)
197 KOG1188 WD40 repeat protein [G 99.8 4.1E-17 8.9E-22 137.3 15.7 261 57-326 60-345 (376)
198 KOG4227 WD40 repeat protein [G 99.7 1.2E-16 2.5E-21 136.9 18.2 265 103-374 50-323 (609)
199 KOG1523 Actin-related protein 99.7 4.2E-16 9.1E-21 130.2 20.5 210 67-283 10-239 (361)
200 KOG0649 WD40 repeat protein [G 99.7 8.1E-15 1.8E-19 118.2 26.6 276 69-371 12-314 (325)
201 KOG1007 WD repeat protein TSSC 99.7 2.2E-16 4.8E-21 130.1 17.3 211 57-280 112-361 (370)
202 KOG0771 Prolactin regulatory e 99.7 1E-16 2.2E-21 138.5 15.3 201 162-374 148-355 (398)
203 KOG0644 Uncharacterized conser 99.7 7.9E-18 1.7E-22 156.3 8.4 242 104-374 185-469 (1113)
204 KOG1272 WD40-repeat-containing 99.7 7.3E-17 1.6E-21 140.9 13.4 270 70-366 132-402 (545)
205 KOG1445 Tumor-specific antigen 99.7 1.4E-16 3.1E-21 143.9 15.5 237 85-329 599-846 (1012)
206 KOG2110 Uncharacterized conser 99.7 1.9E-14 4.2E-19 122.6 25.8 234 112-374 8-249 (391)
207 KOG2394 WD40 protein DMR-N9 [G 99.7 6.5E-16 1.4E-20 137.3 17.5 198 118-352 182-383 (636)
208 KOG1310 WD40 repeat protein [G 99.7 5.3E-16 1.1E-20 138.2 14.8 170 103-281 44-232 (758)
209 PRK03629 tolB translocation pr 99.7 4.3E-14 9.2E-19 131.8 27.6 237 90-353 180-427 (429)
210 PF08662 eIF2A: Eukaryotic tra 99.7 1.1E-14 2.4E-19 120.3 20.5 132 230-375 38-181 (194)
211 PF02239 Cytochrom_D1: Cytochr 99.7 1.3E-12 2.9E-17 118.5 35.4 286 80-376 6-350 (369)
212 PRK01742 tolB translocation pr 99.7 1.1E-14 2.4E-19 136.1 22.6 212 130-372 183-400 (429)
213 PRK04922 tolB translocation pr 99.7 3.5E-14 7.5E-19 132.9 24.7 236 89-353 184-432 (433)
214 KOG1523 Actin-related protein 99.6 5E-14 1.1E-18 117.9 20.1 246 104-364 5-269 (361)
215 PRK02889 tolB translocation pr 99.6 1.4E-13 3E-18 128.5 25.3 238 89-353 176-424 (427)
216 KOG0322 G-protein beta subunit 99.6 1.8E-14 3.8E-19 117.6 16.5 254 62-326 50-322 (323)
217 KOG2139 WD40 repeat protein [G 99.6 5.6E-13 1.2E-17 113.5 25.6 290 69-373 100-431 (445)
218 KOG1240 Protein kinase contain 99.6 1.6E-13 3.5E-18 132.9 24.7 272 98-374 1037-1335(1431)
219 PRK05137 tolB translocation pr 99.6 5.3E-13 1.2E-17 125.1 27.4 235 89-353 182-432 (435)
220 KOG2111 Uncharacterized conser 99.6 5.8E-13 1.3E-17 111.6 24.2 239 112-374 8-257 (346)
221 KOG3881 Uncharacterized conser 99.6 1.6E-13 3.4E-18 117.9 21.1 271 67-354 55-342 (412)
222 KOG1334 WD40 repeat protein [G 99.6 3.6E-14 7.8E-19 125.0 15.4 262 104-374 137-425 (559)
223 KOG1354 Serine/threonine prote 99.6 7.7E-13 1.7E-17 112.0 22.1 286 67-374 25-360 (433)
224 KOG3881 Uncharacterized conser 99.6 5.6E-13 1.2E-17 114.5 21.7 244 111-374 57-321 (412)
225 PRK03629 tolB translocation pr 99.6 1.3E-11 2.8E-16 115.2 32.0 214 132-374 180-407 (429)
226 KOG2139 WD40 repeat protein [G 99.6 3E-13 6.4E-18 115.2 18.5 197 161-374 101-312 (445)
227 KOG4497 Uncharacterized conser 99.6 1.1E-12 2.3E-17 110.5 20.4 278 73-374 14-392 (447)
228 KOG1409 Uncharacterized conser 99.6 1.8E-12 3.9E-17 109.8 21.3 250 60-326 17-269 (404)
229 KOG2321 WD40 repeat protein [G 99.5 2.6E-12 5.7E-17 115.5 23.0 279 66-372 50-342 (703)
230 KOG4497 Uncharacterized conser 99.5 7.3E-12 1.6E-16 105.6 24.1 273 68-367 49-426 (447)
231 PRK04922 tolB translocation pr 99.5 3.5E-12 7.5E-17 119.5 24.8 215 131-374 184-412 (433)
232 PRK05137 tolB translocation pr 99.5 9.8E-12 2.1E-16 116.6 27.1 201 153-374 196-413 (435)
233 PRK02889 tolB translocation pr 99.5 8.6E-12 1.9E-16 116.5 26.5 193 154-365 191-392 (427)
234 KOG2315 Predicted translation 99.5 1.2E-11 2.6E-16 111.2 25.8 273 69-374 36-391 (566)
235 PF08662 eIF2A: Eukaryotic tra 99.5 3.2E-12 7E-17 105.6 19.9 117 205-333 58-184 (194)
236 TIGR02800 propeller_TolB tol-p 99.5 1.2E-11 2.6E-16 115.8 26.4 214 89-326 170-396 (417)
237 PF02239 Cytochrom_D1: Cytochr 99.5 1.1E-10 2.3E-15 106.2 29.3 256 60-335 29-355 (369)
238 PF10282 Lactonase: Lactonase, 99.5 6.9E-10 1.5E-14 100.8 33.5 280 89-373 13-322 (345)
239 KOG0974 WD-repeat protein WDR6 99.5 3E-12 6.6E-17 122.5 17.7 186 171-374 99-289 (967)
240 PF10282 Lactonase: Lactonase, 99.5 2E-09 4.4E-14 97.7 35.2 255 70-332 39-329 (345)
241 PRK04792 tolB translocation pr 99.5 7.9E-11 1.7E-15 110.5 26.3 235 90-353 199-446 (448)
242 KOG0280 Uncharacterized conser 99.5 1.4E-11 3.1E-16 102.3 18.6 205 69-282 71-286 (339)
243 PRK00178 tolB translocation pr 99.4 1.4E-10 2.9E-15 109.0 27.7 235 90-353 180-427 (430)
244 KOG2394 WD40 protein DMR-N9 [G 99.4 3.7E-13 7.9E-18 120.0 9.1 94 67-167 290-383 (636)
245 KOG2321 WD40 repeat protein [G 99.4 2.1E-11 4.5E-16 109.9 19.6 240 110-372 52-301 (703)
246 KOG1272 WD40-repeat-containing 99.4 2.2E-13 4.8E-18 119.4 7.0 193 162-375 133-325 (545)
247 KOG0309 Conserved WD40 repeat- 99.4 4.5E-12 9.8E-17 117.2 14.2 289 67-374 24-340 (1081)
248 TIGR02800 propeller_TolB tol-p 99.4 2E-10 4.4E-15 107.5 25.4 201 153-374 184-398 (417)
249 KOG0974 WD-repeat protein WDR6 99.4 1.1E-11 2.3E-16 118.9 16.6 195 70-281 90-289 (967)
250 KOG4547 WD40 repeat-containing 99.4 8.5E-11 1.8E-15 106.5 21.1 190 171-374 5-221 (541)
251 KOG1064 RAVE (regulator of V-A 99.4 3.2E-12 7E-17 128.2 13.0 201 65-292 2206-2410(2439)
252 KOG4547 WD40 repeat-containing 99.4 2.9E-10 6.2E-15 103.1 22.3 212 77-327 3-220 (541)
253 KOG4714 Nucleoporin [Nuclear s 99.3 3E-11 6.6E-16 98.7 13.6 242 70-325 39-316 (319)
254 PRK00178 tolB translocation pr 99.3 1.9E-09 4.1E-14 101.3 27.8 200 154-374 194-407 (430)
255 PRK01029 tolB translocation pr 99.3 2.5E-09 5.5E-14 99.6 26.4 240 90-354 166-425 (428)
256 COG5354 Uncharacterized protei 99.3 5.3E-09 1.2E-13 93.4 26.5 278 69-374 73-396 (561)
257 PLN02919 haloacid dehalogenase 99.3 1.1E-08 2.3E-13 104.9 32.4 260 113-374 571-889 (1057)
258 PLN02919 haloacid dehalogenase 99.3 1.2E-08 2.6E-13 104.5 32.5 252 71-331 571-892 (1057)
259 PRK04792 tolB translocation pr 99.3 3.3E-09 7.2E-14 99.6 26.5 201 154-374 213-426 (448)
260 COG2706 3-carboxymuconate cycl 99.3 9.9E-08 2.1E-12 82.3 31.6 276 65-352 37-345 (346)
261 TIGR02658 TTQ_MADH_Hv methylam 99.3 2.8E-08 6.1E-13 88.6 28.8 242 75-335 53-338 (352)
262 KOG1064 RAVE (regulator of V-A 99.3 9.4E-11 2E-15 118.0 14.3 198 106-334 2205-2405(2439)
263 TIGR02658 TTQ_MADH_Hv methylam 99.3 7.6E-08 1.7E-12 85.8 31.2 267 89-374 27-331 (352)
264 KOG4190 Uncharacterized conser 99.2 5.4E-11 1.2E-15 106.9 11.0 251 104-371 730-986 (1034)
265 KOG4532 WD40-like repeat conta 99.2 5.2E-09 1.1E-13 86.3 21.4 270 87-377 50-335 (344)
266 KOG1354 Serine/threonine prote 99.2 2.3E-09 4.9E-14 91.3 17.6 244 111-374 27-302 (433)
267 KOG0280 Uncharacterized conser 99.2 1.9E-09 4E-14 89.9 15.2 200 70-279 124-332 (339)
268 KOG2314 Translation initiation 99.1 3.5E-08 7.6E-13 89.2 23.4 284 66-374 249-574 (698)
269 COG5170 CDC55 Serine/threonine 99.1 8.4E-09 1.8E-13 86.8 17.9 258 110-372 27-366 (460)
270 KOG4190 Uncharacterized conser 99.1 5.6E-10 1.2E-14 100.5 11.7 290 61-369 729-1032(1034)
271 KOG1409 Uncharacterized conser 99.1 1.9E-08 4.1E-13 85.8 19.6 195 67-280 68-270 (404)
272 PRK01029 tolB translocation pr 99.1 6.1E-08 1.3E-12 90.4 25.2 229 62-308 179-425 (428)
273 TIGR03300 assembly_YfgL outer 99.1 9.3E-08 2E-12 88.2 25.9 262 79-371 105-377 (377)
274 PF04762 IKI3: IKI3 family; I 99.1 3.4E-07 7.5E-12 92.4 31.1 295 67-374 75-457 (928)
275 COG2706 3-carboxymuconate cycl 99.1 1.8E-06 3.9E-11 74.7 29.3 279 88-374 15-322 (346)
276 KOG2041 WD40 repeat protein [G 99.0 7.7E-08 1.7E-12 89.6 21.6 278 67-369 14-333 (1189)
277 TIGR03300 assembly_YfgL outer 99.0 1.1E-06 2.4E-11 81.1 28.3 267 78-374 64-339 (377)
278 PF00400 WD40: WD domain, G-be 99.0 1.4E-09 3E-14 64.6 5.9 38 58-95 2-39 (39)
279 KOG2041 WD40 repeat protein [G 99.0 5.2E-08 1.1E-12 90.7 18.0 249 55-323 59-333 (1189)
280 PF04762 IKI3: IKI3 family; I 99.0 2.5E-06 5.4E-11 86.4 30.7 298 66-374 208-565 (928)
281 KOG3914 WD repeat protein WDR4 98.9 1.5E-08 3.2E-13 88.2 12.6 147 218-374 73-224 (390)
282 KOG2695 WD40 repeat protein [G 98.9 4.7E-09 1E-13 89.5 9.1 177 164-352 217-401 (425)
283 COG5354 Uncharacterized protei 98.9 1.2E-06 2.6E-11 78.7 24.5 278 66-373 31-348 (561)
284 KOG3914 WD repeat protein WDR4 98.9 2.2E-08 4.7E-13 87.1 13.0 163 114-288 67-231 (390)
285 PRK04043 tolB translocation pr 98.9 2.1E-06 4.6E-11 79.7 27.2 193 160-374 189-401 (419)
286 KOG2315 Predicted translation 98.9 9.7E-07 2.1E-11 80.2 23.5 234 71-327 129-390 (566)
287 COG5170 CDC55 Serine/threonine 98.9 7.1E-08 1.5E-12 81.4 14.8 254 67-325 26-365 (460)
288 COG4946 Uncharacterized protei 98.9 1.8E-05 3.9E-10 70.9 30.2 146 215-374 328-478 (668)
289 PF00400 WD40: WD domain, G-be 98.9 7.7E-09 1.7E-13 61.3 6.3 38 241-278 2-39 (39)
290 PF15492 Nbas_N: Neuroblastoma 98.9 1.8E-06 4E-11 72.4 21.8 200 70-289 46-268 (282)
291 PRK04043 tolB translocation pr 98.9 5E-06 1.1E-10 77.2 27.2 212 90-328 170-401 (419)
292 KOG0309 Conserved WD40 repeat- 98.8 2E-08 4.4E-13 93.6 10.5 214 60-280 107-339 (1081)
293 PF15492 Nbas_N: Neuroblastoma 98.8 5.7E-06 1.2E-10 69.5 23.9 239 73-335 3-267 (282)
294 KOG0882 Cyclophilin-related pe 98.8 1.2E-07 2.6E-12 83.8 13.6 260 65-336 7-314 (558)
295 KOG4532 WD40-like repeat conta 98.8 1.2E-06 2.6E-11 72.6 17.9 184 81-270 130-322 (344)
296 KOG2314 Translation initiation 98.7 1.3E-05 2.9E-10 73.0 24.3 279 71-373 214-525 (698)
297 PF08450 SGL: SMP-30/Gluconola 98.7 0.00012 2.6E-09 63.2 32.0 226 114-362 4-244 (246)
298 KOG1832 HIV-1 Vpr-binding prot 98.7 1.3E-08 2.8E-13 96.7 5.4 278 59-374 1093-1399(1516)
299 COG4946 Uncharacterized protei 98.7 6.3E-06 1.4E-10 73.7 20.8 145 203-360 356-505 (668)
300 PF13360 PQQ_2: PQQ-like domai 98.7 0.00012 2.6E-09 62.8 28.1 222 87-333 1-236 (238)
301 KOG1912 WD40 repeat protein [G 98.7 9E-06 1.9E-10 76.9 21.4 240 70-326 18-303 (1062)
302 PF08450 SGL: SMP-30/Gluconola 98.6 0.00022 4.7E-09 61.6 31.5 220 72-315 4-243 (246)
303 KOG2695 WD40 repeat protein [G 98.6 2.1E-07 4.5E-12 79.6 9.4 148 125-288 228-384 (425)
304 KOG1645 RING-finger-containing 98.6 2.5E-05 5.5E-10 68.5 21.6 264 91-373 175-461 (463)
305 KOG4714 Nucleoporin [Nuclear s 98.6 4.4E-07 9.6E-12 74.8 10.0 151 76-237 98-254 (319)
306 PF14583 Pectate_lyase22: Olig 98.6 0.00042 9.1E-09 62.1 28.7 279 74-372 42-380 (386)
307 KOG1275 PAB-dependent poly(A) 98.6 1.2E-06 2.7E-11 83.9 13.4 181 171-371 147-340 (1118)
308 PRK11138 outer membrane biogen 98.6 0.00012 2.7E-09 67.9 26.5 260 79-372 120-393 (394)
309 KOG1920 IkappaB kinase complex 98.5 7.4E-05 1.6E-09 74.3 25.0 247 67-330 68-325 (1265)
310 KOG1645 RING-finger-containing 98.5 1.2E-05 2.6E-10 70.5 17.4 82 60-142 186-269 (463)
311 KOG1275 PAB-dependent poly(A) 98.5 3.7E-06 7.9E-11 80.8 15.4 183 80-280 148-342 (1118)
312 KOG0882 Cyclophilin-related pe 98.4 3.3E-06 7.3E-11 74.9 12.0 208 156-374 7-232 (558)
313 KOG1912 WD40 repeat protein [G 98.4 2.2E-05 4.8E-10 74.3 18.0 293 61-363 103-486 (1062)
314 KOG1920 IkappaB kinase complex 98.4 0.00014 3.1E-09 72.4 24.2 242 110-376 69-325 (1265)
315 KOG1832 HIV-1 Vpr-binding prot 98.4 2E-07 4.3E-12 88.9 4.6 198 151-374 1094-1292(1516)
316 PRK11138 outer membrane biogen 98.4 0.00074 1.6E-08 62.8 27.4 263 78-373 68-353 (394)
317 PF07433 DUF1513: Protein of u 98.4 0.0012 2.5E-08 57.5 26.5 108 249-365 161-278 (305)
318 PF07433 DUF1513: Protein of u 98.4 0.0003 6.5E-09 61.1 22.4 62 61-128 50-117 (305)
319 KOG2066 Vacuolar assembly/sort 98.4 4.6E-05 1E-09 72.5 18.6 146 78-237 82-233 (846)
320 KOG2066 Vacuolar assembly/sort 98.3 8.4E-05 1.8E-09 70.9 18.8 179 121-327 49-233 (846)
321 KOG1008 Uncharacterized conser 98.3 2E-07 4.4E-12 85.9 1.6 207 111-326 58-274 (783)
322 PF08596 Lgl_C: Lethal giant l 98.3 0.00037 8.1E-09 64.0 22.4 279 69-364 3-327 (395)
323 PF13360 PQQ_2: PQQ-like domai 98.3 0.0019 4.2E-08 55.2 27.6 187 172-376 37-233 (238)
324 KOG1008 Uncharacterized conser 98.2 5.1E-07 1.1E-11 83.3 1.7 205 160-374 58-276 (783)
325 PF11768 DUF3312: Protein of u 98.1 6.8E-05 1.5E-09 69.4 14.0 74 248-328 257-330 (545)
326 PF11768 DUF3312: Protein of u 98.1 0.00024 5.1E-09 65.9 17.2 70 298-373 260-329 (545)
327 PF06433 Me-amine-dh_H: Methyl 98.1 0.0056 1.2E-07 54.1 26.0 247 72-337 40-330 (342)
328 PF06977 SdiA-regulated: SdiA- 98.1 0.0053 1.2E-07 52.5 23.9 209 153-370 16-247 (248)
329 KOG2114 Vacuolar assembly/sort 98.1 0.0028 6.1E-08 61.4 23.2 200 69-281 27-244 (933)
330 KOG2114 Vacuolar assembly/sort 98.0 0.00017 3.8E-09 69.3 14.3 154 217-374 33-202 (933)
331 PF00930 DPPIV_N: Dipeptidyl p 98.0 0.01 2.2E-07 54.2 24.7 242 67-317 42-347 (353)
332 smart00320 WD40 WD40 repeats. 97.9 2.3E-05 4.9E-10 45.2 4.8 37 59-95 4-40 (40)
333 PF08553 VID27: VID27 cytoplas 97.8 0.00043 9.3E-09 68.1 14.1 140 176-326 499-646 (794)
334 PF08553 VID27: VID27 cytoplas 97.8 0.0014 2.9E-08 64.7 16.0 145 218-372 492-646 (794)
335 KOG3621 WD40 repeat-containing 97.7 0.00021 4.4E-09 67.4 9.9 120 251-374 34-155 (726)
336 smart00320 WD40 WD40 repeats. 97.7 0.00011 2.3E-09 42.2 5.4 37 242-278 4-40 (40)
337 PRK02888 nitrous-oxide reducta 97.7 0.0027 5.9E-08 60.5 16.9 181 75-281 200-405 (635)
338 KOG3621 WD40 repeat-containing 97.7 0.00034 7.3E-09 66.0 10.6 112 217-328 43-155 (726)
339 COG0823 TolB Periplasmic compo 97.7 0.0043 9.2E-08 57.7 17.6 198 99-316 182-388 (425)
340 PF04841 Vps16_N: Vps16, N-ter 97.7 0.046 1E-06 50.9 31.0 183 90-285 62-251 (410)
341 PRK02888 nitrous-oxide reducta 97.7 0.012 2.5E-07 56.3 20.4 92 272-374 296-405 (635)
342 KOG3617 WD40 and TPR repeat-co 97.7 0.0012 2.6E-08 63.7 13.8 71 70-140 62-132 (1416)
343 PF04053 Coatomer_WDAD: Coatom 97.7 0.035 7.6E-07 51.9 23.3 218 110-373 33-262 (443)
344 KOG3617 WD40 and TPR repeat-co 97.7 0.00011 2.4E-09 70.6 6.8 108 255-373 20-131 (1416)
345 PF04841 Vps16_N: Vps16, N-ter 97.6 0.056 1.2E-06 50.3 26.7 36 298-333 217-252 (410)
346 KOG2395 Protein involved in va 97.6 0.0068 1.5E-07 55.8 17.1 143 221-371 348-498 (644)
347 PF06977 SdiA-regulated: SdiA- 97.6 0.041 8.9E-07 47.1 24.0 211 61-277 15-247 (248)
348 PF03178 CPSF_A: CPSF A subuni 97.6 0.012 2.5E-07 53.1 18.4 135 229-374 62-203 (321)
349 PF14783 BBS2_Mid: Ciliary BBS 97.5 0.01 2.3E-07 43.2 14.0 93 218-323 14-110 (111)
350 PF00930 DPPIV_N: Dipeptidyl p 97.5 0.068 1.5E-06 48.9 23.1 260 76-363 1-301 (353)
351 COG0823 TolB Periplasmic compo 97.4 0.018 4E-07 53.6 18.2 157 160-330 194-361 (425)
352 cd00216 PQQ_DH Dehydrogenases 97.2 0.21 4.5E-06 47.9 26.6 273 79-374 61-425 (488)
353 KOG2444 WD40 repeat protein [G 97.2 0.00086 1.9E-08 55.0 6.1 143 222-374 33-178 (238)
354 KOG4640 Anaphase-promoting com 97.2 0.0024 5.3E-08 59.7 9.4 72 69-141 22-94 (665)
355 KOG4640 Anaphase-promoting com 97.2 0.0016 3.4E-08 60.9 8.2 73 299-376 22-95 (665)
356 PF02897 Peptidase_S9_N: Proly 97.2 0.21 4.5E-06 46.8 29.3 245 70-331 126-408 (414)
357 PF03178 CPSF_A: CPSF A subuni 97.2 0.18 3.8E-06 45.4 25.1 175 181-369 62-261 (321)
358 COG3386 Gluconolactonase [Carb 97.1 0.17 3.6E-06 45.0 22.9 126 232-365 144-277 (307)
359 KOG2444 WD40 repeat protein [G 97.1 0.00071 1.5E-08 55.4 4.8 105 171-281 70-178 (238)
360 KOG2079 Vacuolar assembly/sort 97.1 0.0022 4.9E-08 63.5 8.9 101 261-366 98-198 (1206)
361 PF08596 Lgl_C: Lethal giant l 97.1 0.016 3.5E-07 53.3 14.0 221 62-315 81-324 (395)
362 PF04053 Coatomer_WDAD: Coatom 97.1 0.055 1.2E-06 50.6 17.4 140 159-326 33-172 (443)
363 KOG4649 PQQ (pyrrolo-quinoline 97.1 0.15 3.2E-06 43.1 24.5 61 79-140 63-124 (354)
364 cd00216 PQQ_DH Dehydrogenases 97.0 0.33 7.2E-06 46.5 27.7 245 80-335 111-432 (488)
365 PF14783 BBS2_Mid: Ciliary BBS 97.0 0.073 1.6E-06 38.9 14.6 100 253-368 2-109 (111)
366 COG3391 Uncharacterized conser 97.0 0.29 6.4E-06 45.2 29.7 199 163-373 78-283 (381)
367 PRK13616 lipoprotein LpqB; Pro 96.9 0.056 1.2E-06 52.6 16.4 161 207-371 350-523 (591)
368 KOG2395 Protein involved in va 96.7 0.15 3.3E-06 47.3 16.4 140 173-326 348-499 (644)
369 COG3391 Uncharacterized conser 96.7 0.53 1.1E-05 43.5 28.4 265 70-354 33-309 (381)
370 PF14655 RAB3GAP2_N: Rab3 GTPa 96.6 0.56 1.2E-05 43.4 22.6 79 300-378 310-403 (415)
371 PF12894 Apc4_WD40: Anaphase-p 96.6 0.0092 2E-07 36.3 5.4 33 342-374 10-42 (47)
372 KOG4649 PQQ (pyrrolo-quinoline 96.5 0.28 6.2E-06 41.4 15.3 70 261-335 62-131 (354)
373 PF12894 Apc4_WD40: Anaphase-p 96.4 0.011 2.3E-07 36.1 5.0 33 68-101 12-44 (47)
374 PHA02713 hypothetical protein; 96.4 0.59 1.3E-05 45.6 19.7 65 261-330 463-536 (557)
375 PF10647 Gmad1: Lipoprotein Lp 96.4 0.39 8.5E-06 41.5 16.7 153 208-366 25-188 (253)
376 KOG2079 Vacuolar assembly/sort 96.3 0.016 3.4E-07 57.8 8.3 101 221-325 101-201 (1206)
377 PHA02713 hypothetical protein; 96.3 0.22 4.8E-06 48.5 16.2 64 218-283 463-536 (557)
378 KOG4441 Proteins containing BT 96.2 1.4 3.1E-05 43.0 21.2 228 78-329 284-548 (571)
379 PF07995 GSDH: Glucose / Sorbo 95.8 1.5 3.2E-05 39.7 22.2 69 300-368 255-330 (331)
380 PRK13616 lipoprotein LpqB; Pro 95.8 1.3 2.8E-05 43.3 18.4 196 68-274 350-562 (591)
381 PF14870 PSII_BNR: Photosynthe 95.7 0.29 6.4E-06 43.2 12.5 114 248-368 142-256 (302)
382 TIGR02604 Piru_Ver_Nterm putat 95.2 2 4.3E-05 39.5 16.9 111 245-362 66-202 (367)
383 PF00780 CNH: CNH domain; Int 94.7 2.6 5.7E-05 36.8 25.8 232 77-335 5-263 (275)
384 KOG4441 Proteins containing BT 94.4 2.1 4.5E-05 41.9 15.5 194 71-281 326-547 (571)
385 PF07569 Hira: TUP1-like enhan 94.4 0.28 6E-06 41.4 8.3 70 304-374 17-96 (219)
386 COG3386 Gluconolactonase [Carb 94.3 3.7 8E-05 36.6 23.4 223 74-315 31-273 (307)
387 PF06433 Me-amine-dh_H: Methyl 94.3 3.9 8.4E-05 36.6 22.6 210 73-290 100-330 (342)
388 PF15390 DUF4613: Domain of un 94.2 2.4 5.2E-05 40.4 14.4 118 251-373 57-186 (671)
389 PHA03098 kelch-like protein; P 94.0 5 0.00011 39.0 17.5 60 78-139 294-366 (534)
390 PHA03098 kelch-like protein; P 93.9 5.3 0.00011 38.9 17.4 186 171-374 295-512 (534)
391 KOG2377 Uncharacterized conser 93.8 2.3 5.1E-05 39.1 13.1 106 248-359 64-169 (657)
392 KOG4460 Nuclear pore complex, 93.7 1.7 3.7E-05 40.7 12.3 93 252-375 105-200 (741)
393 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.6 7.6 0.00017 37.7 30.8 62 79-140 69-139 (527)
394 PF07995 GSDH: Glucose / Sorbo 93.5 2.9 6.3E-05 37.8 13.8 110 252-365 3-135 (331)
395 KOG4499 Ca2+-binding protein R 93.5 4 8.6E-05 34.3 13.3 96 253-353 160-263 (310)
396 COG3204 Uncharacterized protei 93.4 4.8 0.0001 35.0 20.3 170 63-237 81-263 (316)
397 PF10168 Nup88: Nuclear pore c 93.4 2.5 5.4E-05 42.3 14.0 77 298-374 85-180 (717)
398 PF15390 DUF4613: Domain of un 93.4 3.6 7.7E-05 39.3 14.0 121 158-280 56-186 (671)
399 PF10313 DUF2415: Uncharacteri 93.3 0.35 7.6E-06 28.6 4.9 31 251-281 1-34 (43)
400 KOG1916 Nuclear protein, conta 93.3 0.072 1.6E-06 52.5 3.1 122 154-279 128-264 (1283)
401 TIGR03606 non_repeat_PQQ dehyd 93.3 7.2 0.00016 36.8 16.0 111 250-363 29-165 (454)
402 KOG1897 Damage-specific DNA bi 93.2 11 0.00023 38.5 28.8 74 67-140 530-614 (1096)
403 PF12234 Rav1p_C: RAVE protein 93.2 4.4 9.5E-05 39.7 14.9 116 70-188 32-155 (631)
404 PF00780 CNH: CNH domain; Int 92.6 6.6 0.00014 34.2 24.6 231 119-374 5-256 (275)
405 PF14727 PHTB1_N: PTHB1 N-term 92.5 9.2 0.0002 35.7 25.9 149 121-279 37-203 (418)
406 COG3204 Uncharacterized protei 92.2 7.4 0.00016 33.9 18.8 166 156-327 83-263 (316)
407 KOG3630 Nuclear pore complex, 92.1 2.7 5.9E-05 43.2 12.1 103 209-314 158-260 (1405)
408 COG5167 VID27 Protein involved 92.0 5.3 0.00011 37.5 13.0 145 217-372 477-631 (776)
409 KOG3630 Nuclear pore complex, 92.0 2.4 5.2E-05 43.5 11.6 130 225-360 120-260 (1405)
410 PF07569 Hira: TUP1-like enhan 91.9 1.1 2.3E-05 37.9 8.1 71 258-329 18-97 (219)
411 PF12234 Rav1p_C: RAVE protein 91.8 2.7 5.9E-05 41.1 11.6 74 300-376 32-107 (631)
412 PF05694 SBP56: 56kDa selenium 91.8 11 0.00024 35.0 21.0 102 227-329 220-344 (461)
413 PF10313 DUF2415: Uncharacteri 91.4 1.1 2.3E-05 26.6 5.3 32 68-99 1-35 (43)
414 COG5276 Uncharacterized conser 91.4 9.1 0.0002 33.4 26.5 281 69-373 88-369 (370)
415 PF14655 RAB3GAP2_N: Rab3 GTPa 91.3 1.6 3.4E-05 40.5 9.1 93 255-352 6-117 (415)
416 PF08728 CRT10: CRT10; InterP 91.0 2.8 6.1E-05 41.4 10.8 112 260-372 112-245 (717)
417 PHA02790 Kelch-like protein; P 91.0 15 0.00033 35.2 18.5 184 171-374 272-471 (480)
418 PF10168 Nup88: Nuclear pore c 90.9 19 0.00042 36.2 22.2 80 111-191 86-181 (717)
419 PHA02790 Kelch-like protein; P 90.1 18 0.0004 34.6 17.4 60 78-139 271-339 (480)
420 PF02897 Peptidase_S9_N: Proly 89.7 17 0.00038 33.9 28.8 242 112-374 126-405 (414)
421 COG3490 Uncharacterized protei 89.2 14 0.00031 32.1 19.0 99 71-176 71-178 (366)
422 PF14761 HPS3_N: Hermansky-Pud 89.2 10 0.00022 31.6 11.1 48 263-316 29-78 (215)
423 KOG4460 Nuclear pore complex, 89.1 9.2 0.0002 36.1 11.9 32 161-192 168-201 (741)
424 COG3490 Uncharacterized protei 88.6 16 0.00034 31.9 18.0 99 164-269 73-180 (366)
425 PF05096 Glu_cyclase_2: Glutam 88.2 16 0.00035 31.6 25.0 190 160-361 46-249 (264)
426 PRK13684 Ycf48-like protein; P 88.1 10 0.00022 34.3 11.8 113 250-368 172-284 (334)
427 PF11715 Nup160: Nucleoporin N 87.6 3.7 8E-05 40.1 9.3 37 252-288 216-256 (547)
428 PF11635 Med16: Mediator compl 87.3 37 0.0008 34.7 21.6 70 299-368 261-345 (753)
429 PF08801 Nucleoporin_N: Nup133 87.1 22 0.00047 33.4 13.9 30 345-374 191-220 (422)
430 PF05694 SBP56: 56kDa selenium 87.0 26 0.00057 32.7 24.5 197 173-374 90-343 (461)
431 KOG2247 WD40 repeat-containing 86.9 0.085 1.8E-06 48.5 -2.2 143 210-366 38-181 (615)
432 COG5276 Uncharacterized conser 86.9 21 0.00045 31.3 21.4 148 121-283 96-244 (370)
433 KOG2377 Uncharacterized conser 86.6 17 0.00038 33.8 11.9 121 156-281 64-186 (657)
434 KOG1900 Nuclear pore complex, 86.4 6.6 0.00014 41.1 10.2 147 226-374 96-273 (1311)
435 PF08728 CRT10: CRT10; InterP 86.3 15 0.00033 36.5 12.4 106 218-326 113-245 (717)
436 PF13449 Phytase-like: Esteras 86.2 25 0.00055 31.7 16.9 120 253-373 87-249 (326)
437 PLN00033 photosystem II stabil 86.1 29 0.00063 32.3 17.9 115 250-370 280-396 (398)
438 PF06698 DUF1192: Protein of u 86.0 2.1 4.5E-05 27.4 4.3 29 4-32 22-50 (59)
439 TIGR03118 PEPCTERM_chp_1 conse 85.7 25 0.00053 31.1 22.3 235 112-353 25-307 (336)
440 TIGR02276 beta_rpt_yvtn 40-res 85.7 4.9 0.00011 23.2 5.8 31 77-107 1-32 (42)
441 PF03022 MRJP: Major royal jel 85.3 26 0.00056 31.0 17.9 60 300-361 188-253 (287)
442 PRK10115 protease 2; Provision 85.2 45 0.00098 33.7 33.5 71 69-141 128-209 (686)
443 PF13449 Phytase-like: Esteras 85.0 29 0.00063 31.3 13.9 111 251-362 20-165 (326)
444 KOG4499 Ca2+-binding protein R 84.8 23 0.0005 30.0 19.1 92 211-307 162-263 (310)
445 KOG1916 Nuclear protein, conta 84.0 0.65 1.4E-05 46.2 2.0 97 62-168 127-234 (1283)
446 KOG2280 Vacuolar assembly/sort 83.2 52 0.0011 32.8 18.1 54 86-141 61-114 (829)
447 PF11715 Nup160: Nucleoporin N 82.5 3.2 7E-05 40.5 6.3 40 69-108 216-259 (547)
448 PLN00033 photosystem II stabil 81.7 38 0.00082 31.5 12.4 111 253-373 241-356 (398)
449 PF07676 PD40: WD40-like Beta 81.3 7.8 0.00017 22.0 5.4 29 249-277 7-38 (39)
450 PF12768 Rax2: Cortical protei 81.0 30 0.00065 30.4 10.9 98 271-374 15-122 (281)
451 TIGR03075 PQQ_enz_alc_DH PQQ-d 81.0 57 0.0012 31.7 22.0 192 173-373 71-333 (527)
452 PF12657 TFIIIC_delta: Transcr 80.9 14 0.00031 29.7 8.5 29 299-327 87-121 (173)
453 COG4590 ABC-type uncharacteriz 79.9 5.8 0.00013 36.7 6.3 164 109-282 220-388 (733)
454 PF11629 Mst1_SARAH: C termina 79.5 5.2 0.00011 24.2 4.0 31 4-34 9-43 (49)
455 COG5509 Uncharacterized small 79.5 4.6 0.0001 25.4 3.9 26 4-29 26-51 (65)
456 COG5167 VID27 Protein involved 78.4 43 0.00092 31.9 11.3 143 78-237 478-632 (776)
457 TIGR03118 PEPCTERM_chp_1 conse 77.6 51 0.0011 29.2 22.6 229 70-307 25-307 (336)
458 COG3823 Glutamine cyclotransfe 76.5 43 0.00094 27.9 15.0 181 171-361 56-247 (262)
459 PF14727 PHTB1_N: PTHB1 N-term 76.4 68 0.0015 30.1 29.9 274 79-374 37-361 (418)
460 PF10647 Gmad1: Lipoprotein Lp 75.4 53 0.0012 28.3 20.3 149 69-226 25-184 (253)
461 PF14761 HPS3_N: Hermansky-Pud 74.9 15 0.00033 30.6 6.9 47 222-269 31-78 (215)
462 PF07250 Glyoxal_oxid_N: Glyox 73.9 57 0.0012 28.0 11.4 118 256-373 72-199 (243)
463 TIGR02604 Piru_Ver_Nterm putat 73.8 74 0.0016 29.2 24.4 20 252-271 185-204 (367)
464 KOG1983 Tomosyn and related SN 73.4 1.3E+02 0.0028 31.9 16.6 29 69-97 37-65 (993)
465 smart00564 PQQ beta-propeller 72.9 9.5 0.00021 20.6 3.9 25 80-104 7-31 (33)
466 PF03088 Str_synth: Strictosid 71.5 33 0.00071 24.2 8.3 43 224-268 32-74 (89)
467 TIGR02276 beta_rpt_yvtn 40-res 71.3 17 0.00037 20.8 6.2 30 260-289 1-31 (42)
468 KOG1897 Damage-specific DNA bi 70.4 1.4E+02 0.0031 31.0 31.5 102 222-326 502-612 (1096)
469 PF14583 Pectate_lyase22: Olig 69.6 93 0.002 28.7 26.1 108 248-364 185-303 (386)
470 KOG1900 Nuclear pore complex, 69.5 81 0.0017 33.7 11.9 148 86-238 96-273 (1311)
471 PF01731 Arylesterase: Arylest 68.6 29 0.00063 24.3 6.2 29 346-374 56-85 (86)
472 PF12657 TFIIIC_delta: Transcr 68.1 54 0.0012 26.3 8.8 30 160-189 87-121 (173)
473 KOG2247 WD40 repeat-containing 68.0 1 2.2E-05 41.8 -1.3 139 164-318 40-179 (615)
474 PF01011 PQQ: PQQ enzyme repea 67.8 20 0.00044 20.3 4.6 28 81-108 2-29 (38)
475 PF07250 Glyoxal_oxid_N: Glyox 65.5 88 0.0019 26.9 11.2 50 91-140 48-100 (243)
476 PF01436 NHL: NHL repeat; Int 65.4 18 0.00039 18.9 3.9 25 253-277 4-28 (28)
477 KOG3616 Selective LIM binding 64.4 14 0.0003 36.6 5.2 66 252-325 16-81 (1636)
478 PF12341 DUF3639: Protein of u 64.1 20 0.00043 18.9 3.6 25 345-371 3-27 (27)
479 PF10214 Rrn6: RNA polymerase 63.3 1.9E+02 0.004 29.8 26.9 130 160-328 147-277 (765)
480 PF03088 Str_synth: Strictosid 61.8 54 0.0012 23.1 7.5 42 85-127 33-74 (89)
481 PF14269 Arylsulfotran_2: Aryl 61.3 44 0.00096 29.7 7.6 74 299-372 145-219 (299)
482 PF14269 Arylsulfotran_2: Aryl 60.0 43 0.00093 29.8 7.3 73 253-325 146-218 (299)
483 PF05096 Glu_cyclase_2: Glutam 59.9 1.2E+02 0.0025 26.4 23.0 184 70-268 47-249 (264)
484 KOG2280 Vacuolar assembly/sort 58.4 2.1E+02 0.0046 28.9 15.5 88 229-323 64-151 (829)
485 PF12768 Rax2: Cortical protei 56.6 1.4E+02 0.0031 26.3 10.7 51 90-140 17-73 (281)
486 KOG1520 Predicted alkaloid syn 54.0 1.8E+02 0.0039 26.7 11.6 51 316-371 196-248 (376)
487 PF14870 PSII_BNR: Photosynthe 53.4 1.7E+02 0.0036 26.2 29.6 156 206-370 144-301 (302)
488 TIGR02608 delta_60_rpt delta-6 53.2 45 0.00097 21.0 4.5 18 346-363 3-20 (55)
489 COG4590 ABC-type uncharacteriz 53.1 1.2E+02 0.0027 28.5 8.9 159 208-374 222-387 (733)
490 PF01166 TSC22: TSC-22/dip/bun 53.0 57 0.0012 20.7 5.4 33 1-33 12-44 (59)
491 PRK13615 lipoprotein LpqB; Pro 52.9 2.2E+02 0.0047 28.0 11.1 106 254-370 337-446 (557)
492 KOG3616 Selective LIM binding 51.7 43 0.00093 33.4 6.1 70 298-374 15-84 (1636)
493 TIGR03606 non_repeat_PQQ dehyd 51.5 2.2E+02 0.0048 27.1 13.9 59 63-121 25-90 (454)
494 KOG2109 WD40 repeat protein [G 51.1 92 0.002 30.7 8.1 241 60-324 308-573 (788)
495 PF01731 Arylesterase: Arylest 51.0 83 0.0018 22.0 7.0 49 88-139 35-84 (86)
496 PF11285 DUF3086: Protein of u 50.7 26 0.00056 29.8 4.0 33 1-33 2-34 (283)
497 TIGR03074 PQQ_membr_DH membran 50.2 3.1E+02 0.0066 28.3 23.0 148 221-373 262-477 (764)
498 PF11635 Med16: Mediator compl 49.3 3.1E+02 0.0068 28.2 21.0 73 250-322 259-345 (753)
499 PF13570 PQQ_3: PQQ-like domai 49.0 32 0.0007 19.6 3.3 21 78-98 20-40 (40)
500 PRK00295 hypothetical protein; 46.4 39 0.00085 22.4 3.7 29 3-31 5-33 (68)
No 1
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=8.9e-65 Score=412.98 Aligned_cols=342 Identities=52% Similarity=0.987 Sum_probs=307.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcchhcccccCCCCCCccCCcceeEeeccccccccEEEEEeeCCCCeEEEEcCCC
Q 016974 10 ERHAAAIETVNSLRERLKQKRQQLLDVDVAGYSRSQGRAPVSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDG 89 (379)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~v~~~~~~~~~~~l~s~s~D~ 89 (379)
++++.+.++.+.|++++++.|+++.|.++...+..-.. .....+...++|+||.++|+++.|++|+++|+|+|.||
T Consensus 2 ~~~~~l~~Eae~L~~qi~~~r~~~~D~~l~q~a~~~~~----~~~i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDG 77 (343)
T KOG0286|consen 2 EELEQLRQEAEQLKNQIRDARKKLNDVTLAQIAERLES----VGRIQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDG 77 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccccHHHHhhcccc----ceeeeeeeEEEecccccceeeeEecCCcCeEEeeccCC
Confidence 56677778888899999999999998888766543221 12223455689999999999999999999999999999
Q ss_pred cEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecC
Q 016974 90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD 169 (379)
Q Consensus 90 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 169 (379)
.+.|||..+..+.+.++.+..||++|+|+|.|+++||||.|+.+.||++.... .++..++.+.+.+|++++.||.|.++
T Consensus 78 klIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d-~~g~~~v~r~l~gHtgylScC~f~dD 156 (343)
T KOG0286|consen 78 KLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRD-AEGNVRVSRELAGHTGYLSCCRFLDD 156 (343)
T ss_pred eEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccccc-ccccceeeeeecCccceeEEEEEcCC
Confidence 99999999999999999999999999999999999999999999999998532 34566788899999999999999874
Q ss_pred CCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecc
Q 016974 170 EDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH 249 (379)
Q Consensus 170 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h 249 (379)
..|++++.|.+..+||+++++....+ .+|.+.|.++++.|.+++.|++|+.|+..++||+|.. ..++.|.+|
T Consensus 157 --~~ilT~SGD~TCalWDie~g~~~~~f-----~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~-~c~qtF~gh 228 (343)
T KOG0286|consen 157 --NHILTGSGDMTCALWDIETGQQTQVF-----HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG-QCVQTFEGH 228 (343)
T ss_pred --CceEecCCCceEEEEEcccceEEEEe-----cCCcccEEEEecCCCCCCeEEecccccceeeeeccCc-ceeEeeccc
Confidence 57999999999999999999998888 6899999999999989999999999999999999976 778999999
Q ss_pred cCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCc
Q 016974 250 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA 329 (379)
Q Consensus 250 ~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~ 329 (379)
+..|++|.|.|+|.-|++||+|+++++||+|..+.+..+.. ++...+|++++||..|++|++|..|.++.+||...+
T Consensus 229 esDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~---~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~ 305 (343)
T KOG0286|consen 229 ESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSH---DSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG 305 (343)
T ss_pred ccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeecc---CcccCCceeEEEcccccEEEeeecCCceeEeecccc
Confidence 99999999999999999999999999999999999888753 445567999999999999999999999999999888
Q ss_pred eEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEe
Q 016974 330 KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA 371 (379)
Q Consensus 330 ~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~ 371 (379)
+.+..+ .+|.+.|+|+..+|||..|++||||.++|||.
T Consensus 306 e~vg~L----~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 306 ERVGVL----AGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ceEEEe----eccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 888777 68999999999999999999999999999994
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.1e-55 Score=367.78 Aligned_cols=292 Identities=29% Similarity=0.528 Sum_probs=257.7
Q ss_pred eEeeccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEE
Q 016974 58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFN 137 (379)
Q Consensus 58 ~~~~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~ 137 (379)
.|...+.||.++|.|+.|+|+|..|+|||-|.++|+||+.+..+.++.++|..||.+++|+|||+.||+|+.||.|++||
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCcceeeeecccccceEEEEEecC----CCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEE
Q 016974 138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD----EDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 213 (379)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~ 213 (379)
..++. +.-+.+.||+..|++++|.|- ....|++++.||+|+|||+..+.+...+ .+|+..|+++.
T Consensus 186 pktg~------~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l-----sgHT~~VTCvr 254 (480)
T KOG0271|consen 186 PKTGQ------QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL-----SGHTASVTCVR 254 (480)
T ss_pred CCCCC------cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe-----ccCccceEEEE
Confidence 76533 245678999999999999762 2357999999999999999988777666 78999999999
Q ss_pred EeCCCCcEEEEecCCCcEEEEEccCC------------------------------------------------------
Q 016974 214 ISGSNSRMFVSGSCDSTARLWDTRVA------------------------------------------------------ 239 (379)
Q Consensus 214 ~~~~~~~~l~sg~~d~~i~vwd~~~~------------------------------------------------------ 239 (379)
|.. ..++++|+.|++|++|+...+
T Consensus 255 wGG--~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~ 332 (480)
T KOG0271|consen 255 WGG--EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVL 332 (480)
T ss_pred EcC--CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhh
Confidence 874 358899999999999985310
Q ss_pred ------------------------ccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCC
Q 016974 240 ------------------------SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN 295 (379)
Q Consensus 240 ------------------------~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~ 295 (379)
.+++..+.+|..-|+.+.||||++++|++|.|.+||+||.++|+.+..+. .
T Consensus 333 ~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfR-----G 407 (480)
T KOG0271|consen 333 KDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFR-----G 407 (480)
T ss_pred ccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhh-----h
Confidence 01222346788889999999999999999999999999999999877663 3
Q ss_pred CCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEe
Q 016974 296 EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA 371 (379)
Q Consensus 296 ~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~ 371 (379)
|...|..++||.|.++|++|+.|.++++||+.+.+....+ .+|.+.|+++.|+|||+.+++|+.|+.+++|.
T Consensus 408 Hv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DL----pGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 408 HVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDL----PGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccC----CCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 5678999999999999999999999999999988877776 78999999999999999999999999999996
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.1e-52 Score=357.88 Aligned_cols=284 Identities=26% Similarity=0.475 Sum_probs=256.7
Q ss_pred ccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCC--CCEEEEeeCCCcEEEEEcCCC
Q 016974 64 QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT--GQSVACGGLDSVCSIFNLNSP 141 (379)
Q Consensus 64 ~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~--g~~l~~~~~d~~i~iw~~~~~ 141 (379)
.|-+++|..+.|+.+++.|+|||.+|.+++|+..+...++++++|...+.++.|+|. +..+|+++.||++++|++++.
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 367789999999999999999999999999999999999999999999999999997 679999999999999998753
Q ss_pred CCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcE
Q 016974 142 TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRM 221 (379)
Q Consensus 142 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 221 (379)
. ....+.||...|..++|+|++ .+|++++.|.+.++||++++.... .+.||...|.+++|.+ ++.+
T Consensus 252 ~-------~l~~l~gH~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~tk~ElL-----~QEGHs~~v~~iaf~~-DGSL 317 (459)
T KOG0272|consen 252 T-------PLQDLEGHLARVSRVAFHPSG-KFLGTASFDSTWRLWDLETKSELL-----LQEGHSKGVFSIAFQP-DGSL 317 (459)
T ss_pred c-------chhhhhcchhhheeeeecCCC-ceeeecccccchhhcccccchhhH-----hhcccccccceeEecC-CCce
Confidence 2 345678999999999999986 689999999999999999876443 2479999999999997 7889
Q ss_pred EEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeE
Q 016974 222 FVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVT 301 (379)
Q Consensus 222 l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 301 (379)
++||+.|..-||||+++. ..+-.+.||...|.+|+|+|+|..|||||.|++++|||++..+.+..+.. |..-|+
T Consensus 318 ~~tGGlD~~~RvWDlRtg-r~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipA-----H~nlVS 391 (459)
T KOG0272|consen 318 AATGGLDSLGRVWDLRTG-RCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPA-----HSNLVS 391 (459)
T ss_pred eeccCccchhheeecccC-cEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceeccc-----ccchhh
Confidence 999999999999999987 56678999999999999999999999999999999999998777655432 344699
Q ss_pred EEEEcc-CCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEe
Q 016974 302 SIAFSI-SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA 371 (379)
Q Consensus 302 ~~~fs~-~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~ 371 (379)
.++|+| .|.+|++++.|+++++|...+......+ .+|++.|.+++++||+++++|+|.|+++|+|.
T Consensus 392 ~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksL----aGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 392 QVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSL----AGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred heEecccCCeEEEEcccCcceeeecCCCcccchhh----cCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 999999 7899999999999999998888887777 79999999999999999999999999999995
No 4
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.1e-45 Score=296.34 Aligned_cols=298 Identities=27% Similarity=0.403 Sum_probs=248.8
Q ss_pred eeEeeccccccccEEEEEeeCC-CCeEEEEcCCCcEEEEECC-----CCceeeEeecCCcceEEEEECCCCCEEEEeeCC
Q 016974 57 LVCCRTLQGHAGKVYSLDWTSE-RNRIVSASQDGRLIVWNAL-----TSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD 130 (379)
Q Consensus 57 ~~~~~~l~gH~~~v~~~~~~~~-~~~l~s~s~D~~v~iwd~~-----~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d 130 (379)
+....+|+||++.|+.++..+. .+.|++++.|.++.+|++. .|...+.+++|...|..++.+++|++.++++.|
T Consensus 5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD 84 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD 84 (315)
T ss_pred heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecccc
Confidence 4455689999999999999886 4679999999999999864 466678899999999999999999999999999
Q ss_pred CcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeE
Q 016974 131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL 210 (379)
Q Consensus 131 ~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~ 210 (379)
+++++||+.... ..+.+.||..-|.+++|+|++ ..+++|+.|++|++|+...+...... . ..+.+.|.
T Consensus 85 ~~lrlWDl~~g~-------~t~~f~GH~~dVlsva~s~dn-~qivSGSrDkTiklwnt~g~ck~t~~-~---~~~~~WVs 152 (315)
T KOG0279|consen 85 GTLRLWDLATGE-------STRRFVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKLWNTLGVCKYTIH-E---DSHREWVS 152 (315)
T ss_pred ceEEEEEecCCc-------EEEEEEecCCceEEEEecCCC-ceeecCCCcceeeeeeecccEEEEEe-c---CCCcCcEE
Confidence 999999998642 456789999999999999985 67999999999999998765433332 1 23478999
Q ss_pred EEEEeCCC-CcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEe
Q 016974 211 SVSISGSN-SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY 289 (379)
Q Consensus 211 ~~~~~~~~-~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~ 289 (379)
++.|+|.. ..++++++.|++|++||+++. +....+.||.+.++.+++||||..+++|+.||.+.+||++.++.+..+.
T Consensus 153 cvrfsP~~~~p~Ivs~s~DktvKvWnl~~~-~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~ 231 (315)
T KOG0279|consen 153 CVRFSPNESNPIIVSASWDKTVKVWNLRNC-QLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE 231 (315)
T ss_pred EEEEcCCCCCcEEEEccCCceEEEEccCCc-chhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc
Confidence 99999964 678999999999999999866 5667888999999999999999999999999999999999998866542
Q ss_pred eccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCC-----ccCceeEEEECCCCCeEEEeeCC
Q 016974 290 QQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNS-----HEGRITCLGLSADGSALCTGSWD 364 (379)
Q Consensus 290 ~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~-----h~~~v~~~~~s~d~~~l~s~s~D 364 (379)
+...|.+++|+|+.-+|+.+... .|+|||+.+...+..+..-..+ ......+++|++||+.|++|-.|
T Consensus 232 ------a~~~v~sl~fspnrywL~~at~~-sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td 304 (315)
T KOG0279|consen 232 ------AFDIVNSLCFSPNRYWLCAATAT-SIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTD 304 (315)
T ss_pred ------CCCeEeeEEecCCceeEeeccCC-ceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecC
Confidence 23469999999998777766555 4999999887766554321111 12345778999999999999999
Q ss_pred CcEEEEecCc
Q 016974 365 TNLKIWAFGG 374 (379)
Q Consensus 365 ~~i~vw~~~~ 374 (379)
+.|++|.+..
T Consensus 305 ~~irv~qv~~ 314 (315)
T KOG0279|consen 305 NVIRVWQVAK 314 (315)
T ss_pred CcEEEEEeec
Confidence 9999999764
No 5
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.9e-45 Score=307.12 Aligned_cols=288 Identities=25% Similarity=0.430 Sum_probs=260.9
Q ss_pred eccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCC
Q 016974 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS 140 (379)
Q Consensus 61 ~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~ 140 (379)
..+.||..+|+.+-|+|+-..+++++.|++|++||..+++....+++|...+..++|+..|+++++++.|-.+++||...
T Consensus 102 ~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~ 181 (406)
T KOG0295|consen 102 QKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDT 181 (406)
T ss_pred hhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred CCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCc
Q 016974 141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR 220 (379)
Q Consensus 141 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 220 (379)
...+.+.+.+|...|.++.|.|.+ .+++|++.|.+|+.|++.++.++..+ .+|...|..+..+. ++.
T Consensus 182 ------~~~c~ks~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~cv~t~-----~~h~ewvr~v~v~~-DGt 248 (406)
T KOG0295|consen 182 ------FFRCIKSLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGYCVKTF-----PGHSEWVRMVRVNQ-DGT 248 (406)
T ss_pred ------HHHHHHHhcCcccceeeEEEEecC-CeeeecccccceeEEecccceeEEec-----cCchHhEEEEEecC-Cee
Confidence 234566778999999999999986 68999999999999999999999988 68999999999985 889
Q ss_pred EEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccC---------------CCEEEEeeCCCeEEEEECCCCcee
Q 016974 221 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD---------------GNRFGTGSDDGTCRLFDIRTGHQL 285 (379)
Q Consensus 221 ~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~---------------g~~l~s~s~D~~i~iwd~~~~~~~ 285 (379)
++++++.|.+|++|-+.+. .....++.|+.+|.+++|-|. +++++++|.|++||+||+.++..+
T Consensus 249 i~As~s~dqtl~vW~~~t~-~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL 327 (406)
T KOG0295|consen 249 IIASCSNDQTLRVWVVATK-QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCL 327 (406)
T ss_pred EEEecCCCceEEEEEeccc-hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEE
Confidence 9999999999999998754 456678899999999999764 258999999999999999999888
Q ss_pred EEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCC
Q 016974 286 QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT 365 (379)
Q Consensus 286 ~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~ 365 (379)
.++.. +..+|..++|+|.|+||++..+|+++++||+.+.+...++ ..|+..|++++|..+--+++|||-|.
T Consensus 328 ~tL~g-----hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~----~ah~hfvt~lDfh~~~p~VvTGsVdq 398 (406)
T KOG0295|consen 328 FTLVG-----HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTL----EAHEHFVTSLDFHKTAPYVVTGSVDQ 398 (406)
T ss_pred EEEec-----ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeecc----CCCcceeEEEecCCCCceEEeccccc
Confidence 77643 3458999999999999999999999999999998888777 57899999999999889999999999
Q ss_pred cEEEEe
Q 016974 366 NLKIWA 371 (379)
Q Consensus 366 ~i~vw~ 371 (379)
++++|.
T Consensus 399 t~KvwE 404 (406)
T KOG0295|consen 399 TVKVWE 404 (406)
T ss_pred eeeeee
Confidence 999996
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.3e-45 Score=311.47 Aligned_cols=250 Identities=25% Similarity=0.386 Sum_probs=225.5
Q ss_pred ceeEeeccccccccEEEEEeeCC--CCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcE
Q 016974 56 DLVCCRTLQGHAGKVYSLDWTSE--RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVC 133 (379)
Q Consensus 56 ~~~~~~~l~gH~~~v~~~~~~~~--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i 133 (379)
+.....+|.||+..|.++.|+|. +..+|||+.||+|++|++.+...+..+.+|...|..++|+|+|++|++++.|.+-
T Consensus 206 ~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tW 285 (459)
T KOG0272|consen 206 QCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTW 285 (459)
T ss_pred CcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccch
Confidence 44566799999999999999997 5579999999999999999888999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEE
Q 016974 134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 213 (379)
Q Consensus 134 ~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~ 213 (379)
++||+.+.. ......||...|++++|.|++ .++++|+.|..-++||++++.++..+ .+|...|.+++
T Consensus 286 RlWD~~tk~-------ElL~QEGHs~~v~~iaf~~DG-SL~~tGGlD~~~RvWDlRtgr~im~L-----~gH~k~I~~V~ 352 (459)
T KOG0272|consen 286 RLWDLETKS-------ELLLQEGHSKGVFSIAFQPDG-SLAATGGLDSLGRVWDLRTGRCIMFL-----AGHIKEILSVA 352 (459)
T ss_pred hhcccccch-------hhHhhcccccccceeEecCCC-ceeeccCccchhheeecccCcEEEEe-----cccccceeeEe
Confidence 999998643 123346999999999999986 58999999999999999999998887 68999999999
Q ss_pred EeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEcc-CCCEEEEeeCCCeEEEEECCCCceeEEEeecc
Q 016974 214 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 292 (379)
Q Consensus 214 ~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp-~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~ 292 (379)
|+| ++..+|||+.|++++|||++.. ..+.++.+|..-|..|.|+| .|.+|+|+|.|++++||..+++.+++.+..
T Consensus 353 fsP-NGy~lATgs~Dnt~kVWDLR~r-~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaG-- 428 (459)
T KOG0272|consen 353 FSP-NGYHLATGSSDNTCKVWDLRMR-SELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAG-- 428 (459)
T ss_pred ECC-CceEEeecCCCCcEEEeeeccc-ccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcC--
Confidence 998 7788999999999999999965 56888899999999999999 788999999999999999999988877643
Q ss_pred CCCCCCCeEEEEEccCCCEEEEEEecCcEEEEe
Q 016974 293 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD 325 (379)
Q Consensus 293 ~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd 325 (379)
|.+.|.++.++|+++++++++.|.++++|.
T Consensus 429 ---He~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 429 ---HEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ---CccceEEEEeccCCceEEEeccCceeeecc
Confidence 334699999999999999999999999994
No 7
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.3e-44 Score=301.84 Aligned_cols=258 Identities=26% Similarity=0.433 Sum_probs=218.2
Q ss_pred ceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeC
Q 016974 100 QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG 179 (379)
Q Consensus 100 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 179 (379)
.+...+.+|.+.|.+++|+|+|..|++|+.|.++++||+.... ...+.++|...|.|++|+||+ ..|++|+.
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeT-------p~~t~KgH~~WVlcvawsPDg-k~iASG~~ 177 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTET-------PLFTCKGHKNWVLCVAWSPDG-KKIASGSK 177 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCC-------cceeecCCccEEEEEEECCCc-chhhcccc
Confidence 3445677899999999999999999999999999999998633 456789999999999999986 68999999
Q ss_pred CCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeC----CCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeE
Q 016974 180 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG----SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNT 255 (379)
Q Consensus 180 d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~ 255 (379)
||+|++||..++...- ....+|...|.+++|.| +..++|++++.||.|+|||+.. +..+..+.||+.+|+|
T Consensus 178 dg~I~lwdpktg~~~g----~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~-~~~~~~lsgHT~~VTC 252 (480)
T KOG0271|consen 178 DGSIRLWDPKTGQQIG----RALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL-GTCVRTLSGHTASVTC 252 (480)
T ss_pred CCeEEEecCCCCCccc----ccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccC-ceEEEEeccCccceEE
Confidence 9999999998876432 22379999999999976 3466899999999999999974 4678889999999999
Q ss_pred EEEccCCCEEEEeeCCCeEEEEECCCCceeEEEee---------------------------------------------
Q 016974 256 VKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ--------------------------------------------- 290 (379)
Q Consensus 256 v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~--------------------------------------------- 290 (379)
|.|--+| +|++||.|++||+|+...|..+..+..
T Consensus 253 vrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~ 331 (480)
T KOG0271|consen 253 VRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAV 331 (480)
T ss_pred EEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHh
Confidence 9997555 899999999999999876532211100
Q ss_pred ---------------------c--------cCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCC
Q 016974 291 ---------------------Q--------HGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNS 341 (379)
Q Consensus 291 ---------------------~--------~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~ 341 (379)
+ ....|...|+.+.||||++|||+++.|..|++||..+++.+.++ .+
T Consensus 332 ~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasf----RG 407 (480)
T KOG0271|consen 332 LKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASF----RG 407 (480)
T ss_pred hccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhh----hh
Confidence 0 00123345889999999999999999999999999999988777 78
Q ss_pred ccCceeEEEECCCCCeEEEeeCCCcEEEEecCce
Q 016974 342 HEGRITCLGLSADGSALCTGSWDTNLKIWAFGGY 375 (379)
Q Consensus 342 h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~~ 375 (379)
|-++|+.++|+.|.+.|+|||.|.|+|||++..+
T Consensus 408 Hv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk 441 (480)
T KOG0271|consen 408 HVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTK 441 (480)
T ss_pred ccceeEEEEeccCccEEEEcCCCceEEEEEeeee
Confidence 9999999999999999999999999999998763
No 8
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=4.7e-42 Score=281.23 Aligned_cols=293 Identities=21% Similarity=0.353 Sum_probs=249.1
Q ss_pred eeccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECC-CCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEc
Q 016974 60 CRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNAL-TSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNL 138 (379)
Q Consensus 60 ~~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~ 138 (379)
...+.||.+.|+.+.|+|+|..||||+.|..|.+|+.. .-+....+++|.+.|+.+.|.+++..++++|.|++++.||.
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence 35688999999999999999999999999999999954 34556778899999999999999999999999999999999
Q ss_pred CCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCC
Q 016974 139 NSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN 218 (379)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 218 (379)
.... ..+..++|...|.++.-...+...+.+++.|+++++||+++....+.++. .-.++++.|.. .
T Consensus 120 ~tG~-------~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~------kyqltAv~f~d-~ 185 (338)
T KOG0265|consen 120 ETGK-------RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN------KYQLTAVGFKD-T 185 (338)
T ss_pred ccce-------eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc------ceeEEEEEecc-c
Confidence 8643 45667899999998885555666788999999999999998776665533 23578888885 5
Q ss_pred CcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCc----eeEEEeeccCC
Q 016974 219 SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH----QLQVYYQQHGE 294 (379)
Q Consensus 219 ~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~----~~~~~~~~~~~ 294 (379)
+...++|+-|+.|++||++.. .....+.||..+|+.+..+|+|.++.+-+.|.++++||++.-. ++..+ +.+..
T Consensus 186 s~qv~sggIdn~ikvWd~r~~-d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if-~g~~h 263 (338)
T KOG0265|consen 186 SDQVISGGIDNDIKVWDLRKN-DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIF-QGHIH 263 (338)
T ss_pred ccceeeccccCceeeeccccC-cceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEe-ecchh
Confidence 566789999999999999865 5678899999999999999999999999999999999998632 24443 33333
Q ss_pred CCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEec
Q 016974 295 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 372 (379)
Q Consensus 295 ~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~ 372 (379)
+-......++|||++.++.+|+.|..+++||....+.+..+ .+|.+.|++++|+|...+|.+++.|++|++=.+
T Consensus 264 nfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lykl----pGh~gsvn~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 264 NFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKL----PGHYGSVNEVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred hhhhhcceeeccCCCCccccccccceEEEeecccccEEEEc----CCcceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence 33345678899999999999999999999998887877777 899999999999999999999999999987443
No 9
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3e-41 Score=272.80 Aligned_cols=294 Identities=22% Similarity=0.364 Sum_probs=238.6
Q ss_pred eeEeeccccccccEEEEEeeCC-CCeEEEEcCCCcEEEEECCCCc---eeeEe-ecCCcceEEEEECCCCCEEEEeeCCC
Q 016974 57 LVCCRTLQGHAGKVYSLDWTSE-RNRIVSASQDGRLIVWNALTSQ---KTHAI-KLPCAWVMTCAFSPTGQSVACGGLDS 131 (379)
Q Consensus 57 ~~~~~~l~gH~~~v~~~~~~~~-~~~l~s~s~D~~v~iwd~~~~~---~~~~~-~~~~~~v~~~~~s~~g~~l~~~~~d~ 131 (379)
+....+++||.+.|+.++|+|- |..|||||.|+.||||+...+. +...+ .+|...|.+++|+|.|++|+++|.|.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 3456789999999999999997 7899999999999999987422 22233 35778899999999999999999999
Q ss_pred cEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCC---eeEEEecCccccCCccC
Q 016974 132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG---LRTSVFGGEFQSGHTAD 208 (379)
Q Consensus 132 ~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~~~~~~h~~~ 208 (379)
++.||.-. ++.+.+..++.||.+.|.+++|++++ ++|++++.|+.|-+|.+..+ .+..++ .+|...
T Consensus 84 t~~Iw~k~-----~~efecv~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddEfec~aVL-----~~HtqD 152 (312)
T KOG0645|consen 84 TVVIWKKE-----DGEFECVATLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDEFECIAVL-----QEHTQD 152 (312)
T ss_pred eEEEeecC-----CCceeEEeeeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCcEEEEeee-----cccccc
Confidence 99999743 45667788999999999999999975 78999999999999998744 333444 689999
Q ss_pred eEEEEEeCCCCcEEEEecCCCcEEEEEccCC--ccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeE
Q 016974 209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVA--SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ 286 (379)
Q Consensus 209 v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~--~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~ 286 (379)
|..+.|+| ...+|+|++.|.+|++|+-... -..+.++.+|+..|++++|+|.|..|+++++|++++||-..+.-
T Consensus 153 VK~V~WHP-t~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~--- 228 (312)
T KOG0645|consen 153 VKHVIWHP-TEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL--- 228 (312)
T ss_pred ccEEEEcC-CcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc---
Confidence 99999998 4569999999999999976522 24678899999999999999999999999999999999865321
Q ss_pred EEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCce--EE-EecccccCCccCceeEEEECCC-CCeEEEee
Q 016974 287 VYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK--VV-LNLGSLQNSHEGRITCLGLSAD-GSALCTGS 362 (379)
Q Consensus 287 ~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~--~~-~~~~~~~~~h~~~v~~~~~s~d-~~~l~s~s 362 (379)
... +...+..++|. ...|++|+.|+.|++|.-...- .. ..+......|...|+++.|+|. .+.|++|+
T Consensus 229 --~~~----~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~ 300 (312)
T KOG0645|consen 229 --SGM----HSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGG 300 (312)
T ss_pred --chh----cccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecC
Confidence 111 12357888887 4489999999999999744321 11 1111233579999999999994 78999999
Q ss_pred CCCcEEEEecC
Q 016974 363 WDTNLKIWAFG 373 (379)
Q Consensus 363 ~D~~i~vw~~~ 373 (379)
.||+|++|.+.
T Consensus 301 DDG~v~~W~l~ 311 (312)
T KOG0645|consen 301 DDGIVNFWELE 311 (312)
T ss_pred CCceEEEEEec
Confidence 99999999874
No 10
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=7.8e-42 Score=285.98 Aligned_cols=296 Identities=26% Similarity=0.370 Sum_probs=254.6
Q ss_pred ceeEeeccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEE
Q 016974 56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI 135 (379)
Q Consensus 56 ~~~~~~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~i 135 (379)
.+...+.+.||.+-|.|+++.|-..+|+|||.|++++|||+.+|+...++.+|...|..+++|+-..|+.+++.|++|+.
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKC 219 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKC 219 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEE
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEe
Q 016974 136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS 215 (379)
Q Consensus 136 w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 215 (379)
||+... .+++.+-||-..|+|++.+|.. ..|++|+.|.++++||+++...+..+ .+|...|.++.+.
T Consensus 220 wDLe~n-------kvIR~YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V~~l-----~GH~~~V~~V~~~ 286 (460)
T KOG0285|consen 220 WDLEYN-------KVIRHYHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASVHVL-----SGHTNPVASVMCQ 286 (460)
T ss_pred Eechhh-------hhHHHhccccceeEEEeccccc-eeEEecCCcceEEEeeecccceEEEe-----cCCCCcceeEEee
Confidence 999753 3667788999999999999975 47999999999999999998877776 7899999999999
Q ss_pred CCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCC
Q 016974 216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN 295 (379)
Q Consensus 216 ~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~ 295 (379)
+.+++ ++||+.|++|++||++.+ +....+..|...|.+++.+|....+||+|.|. |+-|++..+.-++.+..
T Consensus 287 ~~dpq-vit~S~D~tvrlWDl~ag-kt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsg----- 358 (460)
T KOG0285|consen 287 PTDPQ-VITGSHDSTVRLWDLRAG-KTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSG----- 358 (460)
T ss_pred cCCCc-eEEecCCceEEEeeeccC-ceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhcccc-----
Confidence 86664 689999999999999976 55667788999999999999999999999884 89999998876655322
Q ss_pred CCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccC----CccCceeEEEECCCCCeEEEeeCCCcEEEEe
Q 016974 296 EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQN----SHEGRITCLGLSADGSALCTGSWDTNLKIWA 371 (379)
Q Consensus 296 ~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~----~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~ 371 (379)
+...|++++.+.|| ++++|+++|.+.+||..++.......+... ..+..|++.+|...|..|++|..|++|++|.
T Consensus 359 h~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 359 HNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred ccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence 33458889888776 778899999999999887754333211111 1345799999999999999999999999997
Q ss_pred cC
Q 016974 372 FG 373 (379)
Q Consensus 372 ~~ 373 (379)
=+
T Consensus 438 eD 439 (460)
T KOG0285|consen 438 ED 439 (460)
T ss_pred cc
Confidence 44
No 11
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.6e-41 Score=269.27 Aligned_cols=277 Identities=22% Similarity=0.342 Sum_probs=228.7
Q ss_pred CeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeeccccc
Q 016974 80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG 159 (379)
Q Consensus 80 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~ 159 (379)
-+|+|+|.|.+||+|...+|.+..++.-....|..+.++|+++.||+++.- .|++||+++... ....++.+|++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np-----~Pv~t~e~h~k 84 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNP-----NPVATFEGHTK 84 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCC-----CceeEEeccCC
Confidence 378999999999999999999999999999999999999999999998875 689999987542 14567889999
Q ss_pred ceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCC
Q 016974 160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239 (379)
Q Consensus 160 ~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~ 239 (379)
.|+++.|..++ .++++|+.||+++|||++...+... ..|.++|.++..+| ++.-|++|..+|.|++||++..
T Consensus 85 NVtaVgF~~dg-rWMyTgseDgt~kIWdlR~~~~qR~------~~~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~ 156 (311)
T KOG0315|consen 85 NVTAVGFQCDG-RWMYTGSEDGTVKIWDLRSLSCQRN------YQHNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGEN 156 (311)
T ss_pred ceEEEEEeecC-eEEEecCCCceEEEEeccCcccchh------ccCCCCcceEEecC-CcceEEeecCCCcEEEEEccCC
Confidence 99999999875 7999999999999999998544333 35778999999998 5567889999999999999865
Q ss_pred ccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeecc-CCCCCCCeEEEEEccCCCEEEEEEec
Q 016974 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH-GENEIPHVTSIAFSISGRLLFAGYSN 318 (379)
Q Consensus 240 ~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~-~~~~~~~v~~~~fs~~g~~l~sg~~d 318 (379)
.....-.......|.++...|||.+++.+-+-|.+.+|++-.......+...+ -..+...+..+.|||++++||++++|
T Consensus 157 ~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssd 236 (311)
T KOG0315|consen 157 SCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSD 236 (311)
T ss_pred ccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCC
Confidence 33222233344679999999999999999999999999987643222211111 12234568999999999999999999
Q ss_pred CcEEEEeCCCc-eEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 319 GDCYVWDTLLA-KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 319 g~i~iwd~~~~-~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
.+++||+.... +....+ .+|+..+...+||.||++|++||.|+++|+|++..
T Consensus 237 ktv~iwn~~~~~kle~~l----~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~ 289 (311)
T KOG0315|consen 237 KTVKIWNTDDFFKLELVL----TGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSA 289 (311)
T ss_pred ceEEEEecCCceeeEEEe----ecCCceEEeeeeccCccEEEecCCCCceeeccccc
Confidence 99999998766 333344 68999999999999999999999999999999865
No 12
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1e-42 Score=318.24 Aligned_cols=281 Identities=30% Similarity=0.531 Sum_probs=233.1
Q ss_pred EeeccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEc
Q 016974 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNL 138 (379)
Q Consensus 59 ~~~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~ 138 (379)
|.-++..-...++|..|++|+.+||-|-.|..|++|.+... .+..++... +...+=+.+.|-...+.|-
T Consensus 370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~lk~~~----------~l~~~d~~sad~~~~~~D~ 438 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKLKDAS----------DLSNIDTESADVDVDMLDD 438 (707)
T ss_pred EEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchh-hhccccchh----------hhccccccccchhhhhccc
Confidence 33344433456999999999999999999999999997643 333332211 0111222233333344433
Q ss_pred CCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCC
Q 016974 139 NSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN 218 (379)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 218 (379)
+.. ...+++.||.++|+.+.|+|+. ++|+++|.|+++++|.+.+..+...+ .+|..+|..+.|+| .
T Consensus 439 ~~~-------~~~~~L~GH~GPVyg~sFsPd~-rfLlScSED~svRLWsl~t~s~~V~y-----~GH~~PVwdV~F~P-~ 504 (707)
T KOG0263|consen 439 DSS-------GTSRTLYGHSGPVYGCSFSPDR-RFLLSCSEDSSVRLWSLDTWSCLVIY-----KGHLAPVWDVQFAP-R 504 (707)
T ss_pred cCC-------ceeEEeecCCCceeeeeecccc-cceeeccCCcceeeeecccceeEEEe-----cCCCcceeeEEecC-C
Confidence 321 2456789999999999999985 78999999999999999998777666 68999999999996 6
Q ss_pred CcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCC
Q 016974 219 SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP 298 (379)
Q Consensus 219 ~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~ 298 (379)
+-+|+|++.|++-++|..... .+.+.+.||.+.|.|++|+|+..|+++||.|.++|+||+.+|..+..|.. |..
T Consensus 505 GyYFatas~D~tArLWs~d~~-~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G-----H~~ 578 (707)
T KOG0263|consen 505 GYYFATASHDQTARLWSTDHN-KPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG-----HKG 578 (707)
T ss_pred ceEEEecCCCceeeeeecccC-CchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecC-----CCC
Confidence 889999999999999998764 78899999999999999999999999999999999999999999888743 456
Q ss_pred CeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 299 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 299 ~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
+|.+++|||+|++|++|+.||.|.+||+.+++.+..+ .+|++.|+++.|+.||..||+||.|++|++||+..
T Consensus 579 ~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l----~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 579 PVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQL----KGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred ceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhh----hcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 8999999999999999999999999999999888777 68999999999999999999999999999999876
No 13
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=4.8e-42 Score=291.69 Aligned_cols=284 Identities=29% Similarity=0.482 Sum_probs=239.3
Q ss_pred cccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCC
Q 016974 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDG 146 (379)
Q Consensus 67 ~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~ 146 (379)
..+|..|.|.|+|+.|++|+..|.+.+|+..+-.....+..|...|.++.|+++|.++++|+.+|.|++|+.+-.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn----- 170 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN----- 170 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh-----
Confidence 347999999999999999999999999997543333445678899999999999999999999999999987632
Q ss_pred Ccceeeeeccc-ccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEe
Q 016974 147 NLPVSRMLSGH-KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG 225 (379)
Q Consensus 147 ~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg 225 (379)
....+.+| ...|++++|+|+ +..+++++.||+|+|||.........+ .+|...|.+++|+|.. .++++|
T Consensus 171 ---nVk~~~ahh~eaIRdlafSpn-DskF~t~SdDg~ikiWdf~~~kee~vL-----~GHgwdVksvdWHP~k-gLiasg 240 (464)
T KOG0284|consen 171 ---NVKIIQAHHAEAIRDLAFSPN-DSKFLTCSDDGTIKIWDFRMPKEERVL-----RGHGWDVKSVDWHPTK-GLIASG 240 (464)
T ss_pred ---hhHHhhHhhhhhhheeccCCC-CceeEEecCCCeEEEEeccCCchhhee-----ccCCCCcceeccCCcc-ceeEEc
Confidence 22334444 489999999995 567999999999999999876544444 7899999999999854 589999
Q ss_pred cCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEE
Q 016974 226 SCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF 305 (379)
Q Consensus 226 ~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~f 305 (379)
+.|..|++||.+.. .++.++.+|...|..+.|+|++++|+++|.|..++++|+++.+.+..+. ++...|+++.|
T Consensus 241 skDnlVKlWDprSg-~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r-----~Hkkdv~~~~W 314 (464)
T KOG0284|consen 241 SKDNLVKLWDPRSG-SCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYR-----GHKKDVTSLTW 314 (464)
T ss_pred cCCceeEeecCCCc-chhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhh-----cchhhheeecc
Confidence 99999999999976 5677889999999999999999999999999999999999776665542 23456999999
Q ss_pred ccCCC-EEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 306 SISGR-LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 306 s~~g~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
+|-.. ++.+|+.||.|..|.+...+.+. .....|...|++++|+|-|..||+||.|+++|.|.-+.
T Consensus 315 hP~~~~lftsgg~Dgsvvh~~v~~~~p~~---~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 315 HPLNESLFTSGGSDGSVVHWVVGLEEPLG---EIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNR 381 (464)
T ss_pred ccccccceeeccCCCceEEEecccccccc---CCCcccccceeeeeccccceeEeecCCCcceeeeccCC
Confidence 99654 77889999999999987444433 34478999999999999999999999999999997543
No 14
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=5.4e-39 Score=281.14 Aligned_cols=306 Identities=20% Similarity=0.339 Sum_probs=246.9
Q ss_pred ceeEeeccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEee---cCCcceEEEEECCCCCEEEEeeCCCc
Q 016974 56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK---LPCAWVMTCAFSPTGQSVACGGLDSV 132 (379)
Q Consensus 56 ~~~~~~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~g~~l~~~~~d~~ 132 (379)
+.+...++..|..-|.|+.|+|||.+++|++.||++.|||-.+++.+..+. .|.+.|.+++|+||++.++++|.|.+
T Consensus 179 PFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt 258 (603)
T KOG0318|consen 179 PFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKT 258 (603)
T ss_pred CeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCce
Confidence 345556888999999999999999999999999999999999999999887 78999999999999999999999999
Q ss_pred EEEEEcCCCCCC----------C--------------------------CCcceeeeecccccceEEEEEecCCCceEEE
Q 016974 133 CSIFNLNSPTDK----------D--------------------------GNLPVSRMLSGHKGYVSCCQYVPDEDTHLIT 176 (379)
Q Consensus 133 i~iw~~~~~~~~----------~--------------------------~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 176 (379)
++|||+....-. + ....+.+.+.||...|+++..+|++ .+|++
T Consensus 259 ~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~-~~i~S 337 (603)
T KOG0318|consen 259 IKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDG-KTIYS 337 (603)
T ss_pred EEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCC-CEEEe
Confidence 999998753200 0 0011345678999999999999987 78999
Q ss_pred eeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCC-----------ccc---
Q 016974 177 SSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA-----------SRA--- 242 (379)
Q Consensus 177 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~-----------~~~--- 242 (379)
|+.||.|.-||..++......+ .+|...|..++.... ..+++.+.|.++++.++... .++
T Consensus 338 gsyDG~I~~W~~~~g~~~~~~g----~~h~nqI~~~~~~~~--~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~l 411 (603)
T KOG0318|consen 338 GSYDGHINSWDSGSGTSDRLAG----KGHTNQIKGMAASES--GELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGL 411 (603)
T ss_pred eccCceEEEEecCCcccccccc----ccccceEEEEeecCC--CcEEEEecCCeEEEEecccCcccccceeecCCCceeE
Confidence 9999999999999886554432 578899999988742 34678999999999976311 011
Q ss_pred ----------------eEEEeccc--------CCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCC
Q 016974 243 ----------------VRTFHGHE--------GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP 298 (379)
Q Consensus 243 ----------------~~~~~~h~--------~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~ 298 (379)
+..++.+. -...+++++|++..++.|+.|+.+.||.+..+........ ..+.+
T Consensus 412 av~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~---~~h~a 488 (603)
T KOG0318|consen 412 AVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKL---LEHRA 488 (603)
T ss_pred EEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeee---ecccC
Confidence 11122222 1356899999999999999999999999987554322111 23456
Q ss_pred CeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 299 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 299 ~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
+|++++||||+.|||+|+..+.+.+||+.+.+... . .+.-|+..|.|++|+|+++.||+||.|..|.||++.+
T Consensus 489 ~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~--~-~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~k 561 (603)
T KOG0318|consen 489 AITDVAYSPDGAYLAAGDASRKVVLYDVASREVKT--N-RWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKK 561 (603)
T ss_pred CceEEEECCCCcEEEEeccCCcEEEEEcccCceec--c-eeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccC
Confidence 79999999999999999999999999988776521 1 2245999999999999999999999999999999876
No 15
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=9.8e-42 Score=295.62 Aligned_cols=294 Identities=22% Similarity=0.405 Sum_probs=243.0
Q ss_pred EeeccccccccEEEEEeeC-CCCeEEEEcCCCcEEEEECCC-CceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEE
Q 016974 59 CCRTLQGHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALT-SQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIF 136 (379)
Q Consensus 59 ~~~~l~gH~~~v~~~~~~~-~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw 136 (379)
.++++.||+..|.++.|.| .+.+|+||+.|+.|+||++.. +.+++++.+|...|..++|+++|..++++|.|+.+++|
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlw 285 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLW 285 (503)
T ss_pred heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeee
Confidence 4678999999999999999 788999999999999999987 88999999999999999999999999999999999999
Q ss_pred EcCCCCCCCCCcceeeeeccccc-ceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEe
Q 016974 137 NLNSPTDKDGNLPVSRMLSGHKG-YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS 215 (379)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 215 (379)
|...+. +.. ..|.+ .++|+.|+|++.+.+++|+.|+.|+.||++++..+..+ ..|-..|.++.|.
T Consensus 286 DtETG~-------~~~--~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeY-----d~hLg~i~~i~F~ 351 (503)
T KOG0282|consen 286 DTETGQ-------VLS--RFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEY-----DRHLGAILDITFV 351 (503)
T ss_pred ccccce-------EEE--EEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHH-----HhhhhheeeeEEc
Confidence 987643 111 22333 46889999998889999999999999999998755444 4577889999999
Q ss_pred CCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCC
Q 016974 216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN 295 (379)
Q Consensus 216 ~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~ 295 (379)
+ +++.|++.+.|+.++||+.+.+.........+.....++..+|++.+++.-+.|+.|-+|.+...-.........+..
T Consensus 352 ~-~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~ 430 (503)
T KOG0282|consen 352 D-EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHS 430 (503)
T ss_pred c-CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhccee
Confidence 7 778999999999999999886533222333334457889999999999999999999999875432222111112222
Q ss_pred CCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCC-CeEEEeeCCCcEEEEe
Q 016974 296 EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG-SALCTGSWDTNLKIWA 371 (379)
Q Consensus 296 ~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~-~~l~s~s~D~~i~vw~ 371 (379)
-.+.-..+.|||||.+|++|++||.+.+||..+.+.+..+ +.|++++..+.|+|.. +.||++++||.|++|+
T Consensus 431 vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~l----kah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 431 VAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKL----KAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcc----ccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 3345678999999999999999999999999988887776 7899999999999964 7899999999999996
No 16
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=5.6e-40 Score=283.79 Aligned_cols=287 Identities=25% Similarity=0.423 Sum_probs=238.8
Q ss_pred ccccccccEEEEEeeCCCC-eEEEEcCCCcEEEEECCC--Cceee------Eee------cCCcceEEEEECCCCCEEEE
Q 016974 62 TLQGHAGKVYSLDWTSERN-RIVSASQDGRLIVWNALT--SQKTH------AIK------LPCAWVMTCAFSPTGQSVAC 126 (379)
Q Consensus 62 ~l~gH~~~v~~~~~~~~~~-~l~s~s~D~~v~iwd~~~--~~~~~------~~~------~~~~~v~~~~~s~~g~~l~~ 126 (379)
.+.+|..+|.+.+|+|-.. .|++|+.|.+.++|++.. ..... .+. .....|++++|+.+|..||+
T Consensus 173 kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~Lat 252 (524)
T KOG0273|consen 173 KVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLAT 252 (524)
T ss_pred eeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEE
Confidence 3445999999999999766 899999999999999864 11111 110 11245899999999999999
Q ss_pred eeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCc
Q 016974 127 GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHT 206 (379)
Q Consensus 127 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~ 206 (379)
|+.||.++||+.... ...++..|+++|.++.|+..+ ++|++++.|+++.+||..++.....+ .-|.
T Consensus 253 G~~~G~~riw~~~G~--------l~~tl~~HkgPI~slKWnk~G-~yilS~~vD~ttilwd~~~g~~~q~f-----~~~s 318 (524)
T KOG0273|consen 253 GSEDGEARIWNKDGN--------LISTLGQHKGPIFSLKWNKKG-TYILSGGVDGTTILWDAHTGTVKQQF-----EFHS 318 (524)
T ss_pred eecCcEEEEEecCch--------hhhhhhccCCceEEEEEcCCC-CEEEeccCCccEEEEeccCceEEEee-----eecc
Confidence 999999999997642 345677899999999999865 68999999999999999988776666 3466
Q ss_pred cCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeE
Q 016974 207 ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ 286 (379)
Q Consensus 207 ~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~ 286 (379)
.+...+.|.. ..-|++++.|+.|+++.+.. ..++.++.||.+.|.++.|+|.|..|+|+|+|++++||++.......
T Consensus 319 ~~~lDVdW~~--~~~F~ts~td~~i~V~kv~~-~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~ 395 (524)
T KOG0273|consen 319 APALDVDWQS--NDEFATSSTDGCIHVCKVGE-DRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVH 395 (524)
T ss_pred CCccceEEec--CceEeecCCCceEEEEEecC-CCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchh
Confidence 6667777864 45789999999999999874 47888999999999999999999999999999999999987655433
Q ss_pred EEeeccCCCCCCCeEEEEEccCC---------CEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCe
Q 016974 287 VYYQQHGENEIPHVTSIAFSISG---------RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSA 357 (379)
Q Consensus 287 ~~~~~~~~~~~~~v~~~~fs~~g---------~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~ 357 (379)
.+. .+...|..+.|+|+| ..+++++.|++|++||+..+.++.++ ..|..+|++++|+|+|++
T Consensus 396 ~l~-----~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f----~kH~~pVysvafS~~g~y 466 (524)
T KOG0273|consen 396 DLQ-----AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL----MKHQEPVYSVAFSPNGRY 466 (524)
T ss_pred hhh-----hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEee----ccCCCceEEEEecCCCcE
Confidence 322 123458888898876 47999999999999999999888776 679999999999999999
Q ss_pred EEEeeCCCcEEEEecCc
Q 016974 358 LCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 358 l~s~s~D~~i~vw~~~~ 374 (379)
||+|+.||.|.+|+...
T Consensus 467 lAsGs~dg~V~iws~~~ 483 (524)
T KOG0273|consen 467 LASGSLDGCVHIWSTKT 483 (524)
T ss_pred EEecCCCCeeEeccccc
Confidence 99999999999998654
No 17
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.8e-39 Score=303.17 Aligned_cols=296 Identities=27% Similarity=0.506 Sum_probs=253.8
Q ss_pred eeccccc-cccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCc--eeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEE
Q 016974 60 CRTLQGH-AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ--KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIF 136 (379)
Q Consensus 60 ~~~l~gH-~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw 136 (379)
..++.+| ...|.++.|+++|+.|++++.|+.+++|+..+.+ ....+..|...|..++|+|+|+++++++.|++++||
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 4456555 7789999999999999999999999999997777 666778889999999999999999999999999999
Q ss_pred EcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeC
Q 016974 137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG 216 (379)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 216 (379)
|+..+ ....+++.+|...|+++.|+|++ +.+++|+.|++|++||++++.+...+ .+|...|.++++++
T Consensus 231 d~~~~------~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l-----~~hs~~is~~~f~~ 298 (456)
T KOG0266|consen 231 DLKDD------GRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKL-----KGHSDGISGLAFSP 298 (456)
T ss_pred eccCC------CeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEee-----eccCCceEEEEECC
Confidence 99432 13567889999999999999987 88999999999999999998888777 68999999999997
Q ss_pred CCCcEEEEecCCCcEEEEEccCCcc-ceEEEecccCC--eeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccC
Q 016974 217 SNSRMFVSGSCDSTARLWDTRVASR-AVRTFHGHEGD--VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG 293 (379)
Q Consensus 217 ~~~~~l~sg~~d~~i~vwd~~~~~~-~~~~~~~h~~~--v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~ 293 (379)
+++++++++.|+.|++||+..... +...+.++... +++++|+|++.++++++.|+.+++||++.+.....+.....
T Consensus 299 -d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~ 377 (456)
T KOG0266|consen 299 -DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSN 377 (456)
T ss_pred -CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCC
Confidence 678899999999999999987642 35566677665 99999999999999999999999999998887766543222
Q ss_pred CCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCc-cCceeEEEECCCCCeEEEee--CCCcEEEE
Q 016974 294 ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH-EGRITCLGLSADGSALCTGS--WDTNLKIW 370 (379)
Q Consensus 294 ~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h-~~~v~~~~~s~d~~~l~s~s--~D~~i~vw 370 (379)
. ...+.+..+++.|+++++|+.|+.|++||..++.....+ .+| ...|..++++|..+++++++ .|+.|++|
T Consensus 378 ~--~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l----~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w 451 (456)
T KOG0266|consen 378 L--VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRL----EGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLW 451 (456)
T ss_pred c--ceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhh----cCCCCCceeccccCCCcCeeeecCcCCCceEEEe
Confidence 1 124556667899999999999999999999886666555 578 88999999999999999998 78999999
Q ss_pred ecCc
Q 016974 371 AFGG 374 (379)
Q Consensus 371 ~~~~ 374 (379)
....
T Consensus 452 ~~~~ 455 (456)
T KOG0266|consen 452 KYDF 455 (456)
T ss_pred cCCC
Confidence 8653
No 18
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-39 Score=264.59 Aligned_cols=255 Identities=25% Similarity=0.407 Sum_probs=213.0
Q ss_pred eEeeccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEE
Q 016974 58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFN 137 (379)
Q Consensus 58 ~~~~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~ 137 (379)
...+.|+||...|..+..++||++.+|+|.|+++|+||+.+++..+.+.+|...|.+++|+||.+.+++|+.|+++++|+
T Consensus 54 ~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwn 133 (315)
T KOG0279|consen 54 VPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWN 133 (315)
T ss_pred ceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeee
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCcceeeeecccccceEEEEEecCC-CceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeC
Q 016974 138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG 216 (379)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 216 (379)
.-.. ......-.+|++.|.|+.|+|+. +.+|++++.|++|++||+++.+....+ .+|+..++.+.++|
T Consensus 134 t~g~------ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~-----~gh~~~v~t~~vSp 202 (315)
T KOG0279|consen 134 TLGV------CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTF-----IGHSGYVNTVTVSP 202 (315)
T ss_pred eccc------EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcc-----ccccccEEEEEECC
Confidence 7532 11222222347899999999985 457999999999999999886655444 68999999999997
Q ss_pred CCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCC--
Q 016974 217 SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE-- 294 (379)
Q Consensus 217 ~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~-- 294 (379)
++.++++|+.||.+.+||++.. +.+..+ +|...|++++|+|+...|+.+ .+..|+|||+.++..+..+......
T Consensus 203 -DGslcasGgkdg~~~LwdL~~~-k~lysl-~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s 278 (315)
T KOG0279|consen 203 -DGSLCASGGKDGEAMLWDLNEG-KNLYSL-EAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPS 278 (315)
T ss_pred -CCCEEecCCCCceEEEEEccCC-ceeEec-cCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccccccccc
Confidence 7889999999999999999865 445555 578999999999997666554 4556999999988876655332211
Q ss_pred --CCCCCeEEEEEccCCCEEEEEEecCcEEEEeCC
Q 016974 295 --NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327 (379)
Q Consensus 295 --~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~ 327 (379)
.......+++|+++|+.|++|..|+.|++|.+.
T Consensus 279 ~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 279 SKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 113346788999999999999999999999853
No 19
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3.5e-38 Score=277.77 Aligned_cols=287 Identities=36% Similarity=0.582 Sum_probs=247.1
Q ss_pred eccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCC
Q 016974 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS 140 (379)
Q Consensus 61 ~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~ 140 (379)
.+|++|.++|++++|+|++++|++++.||.+++|+..+++....+..+...+..+.|+|+++++++++.|+.+++|++..
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 57889999999999999999999999999999999998888888888888888999999999999999999999999975
Q ss_pred CCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCc
Q 016974 141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR 220 (379)
Q Consensus 141 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 220 (379)
.. ....+..|...+.++.|.|+ +.++++++.|+.+.+||+.++.....+ ..|...+.++.+++. +.
T Consensus 83 ~~-------~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~-~~ 148 (289)
T cd00200 83 GE-------CVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTL-----RGHTDWVNSVAFSPD-GT 148 (289)
T ss_pred cc-------ceEEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEe-----ccCCCcEEEEEEcCc-CC
Confidence 31 33456678889999999987 457777777999999999877665554 367788999999974 67
Q ss_pred EEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCe
Q 016974 221 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV 300 (379)
Q Consensus 221 ~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v 300 (379)
++++++.|+.|++||++.. +....+..|...|.++.|+|+++.+++++.|+.|++||+++++.+..+.. +...+
T Consensus 149 ~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~-----~~~~i 222 (289)
T cd00200 149 FVASSSQDGTIKLWDLRTG-KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRG-----HENGV 222 (289)
T ss_pred EEEEEcCCCcEEEEEcccc-ccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhh-----cCCce
Confidence 8888888999999999754 55667788988999999999999999999999999999998776654421 23368
Q ss_pred EEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEe
Q 016974 301 TSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA 371 (379)
Q Consensus 301 ~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~ 371 (379)
.+++|+|++.++++++.||.|++||...++....+ ..|...|.+++|+|+++.|++++.|+.|++|+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 223 NSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL----SGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEc----cccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 99999999999998888999999999877766665 46888999999999999999999999999996
No 20
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=9.3e-39 Score=276.23 Aligned_cols=279 Identities=23% Similarity=0.381 Sum_probs=242.4
Q ss_pred ccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCC
Q 016974 68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN 147 (379)
Q Consensus 68 ~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~ 147 (379)
..|++++|+.+|..||+|+.||.+|||+. +|..+.++..|.++|.++.|+..|.||++++.|+++.+||.-...
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~----- 309 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGT----- 309 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCce-----
Confidence 46999999999999999999999999995 477888889999999999999999999999999999999975432
Q ss_pred cceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecC
Q 016974 148 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC 227 (379)
Q Consensus 148 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~ 227 (379)
....+.-|..+-..+.|..+ ..+++++.|+.|+++.+....+...+ .+|...|.++.|+| .+.+|+|++.
T Consensus 310 --~~q~f~~~s~~~lDVdW~~~--~~F~ts~td~~i~V~kv~~~~P~~t~-----~GH~g~V~alk~n~-tg~LLaS~Sd 379 (524)
T KOG0273|consen 310 --VKQQFEFHSAPALDVDWQSN--DEFATSSTDGCIHVCKVGEDRPVKTF-----IGHHGEVNALKWNP-TGSLLASCSD 379 (524)
T ss_pred --EEEeeeeccCCccceEEecC--ceEeecCCCceEEEEEecCCCcceee-----ecccCceEEEEECC-CCceEEEecC
Confidence 33445556666456788754 35999999999999999776666655 67999999999997 6789999999
Q ss_pred CCcEEEEEccCCccceEEEecccCCeeEEEEccCC---------CEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCC
Q 016974 228 DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG---------NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP 298 (379)
Q Consensus 228 d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g---------~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~ 298 (379)
|++++||..... .....+++|...|..+.|+|+| ..+++++.|++|++||+..+.++..+.. +..
T Consensus 380 D~TlkiWs~~~~-~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~k-----H~~ 453 (524)
T KOG0273|consen 380 DGTLKIWSMGQS-NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMK-----HQE 453 (524)
T ss_pred CCeeEeeecCCC-cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeecc-----CCC
Confidence 999999997644 5677889999999999999975 4799999999999999999999988754 345
Q ss_pred CeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecC
Q 016974 299 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 373 (379)
Q Consensus 299 ~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~ 373 (379)
+|++++|||+|+|+|+|+.||.|.+|+..+++..... ...+.|..++|+.+|..|..+-.|+.+++-++.
T Consensus 454 pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~-----~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 454 PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSY-----QGTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred ceEEEEecCCCcEEEecCCCCeeEeccccchheeEee-----cCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 7999999999999999999999999999999988775 245679999999999999999999999998874
No 21
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=5e-38 Score=314.03 Aligned_cols=290 Identities=17% Similarity=0.308 Sum_probs=233.4
Q ss_pred cccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCC----c----eeeEeecCCcceEEEEECC-CCCEEEEeeCCCcE
Q 016974 63 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS----Q----KTHAIKLPCAWVMTCAFSP-TGQSVACGGLDSVC 133 (379)
Q Consensus 63 l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~----~----~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~d~~i 133 (379)
+.+|.+.|++++|+|++++||||+.|++|+|||.... . ....+. +...+.+++|+| ++.+|++++.|++|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4569999999999999999999999999999997532 1 111222 235688899987 47899999999999
Q ss_pred EEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEE
Q 016974 134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 213 (379)
Q Consensus 134 ~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~ 213 (379)
++||+... .....+.+|.+.|++++|+|.++.+|++|+.|++|++||+.++.....+. +...+.++.
T Consensus 558 ~lWd~~~~-------~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~------~~~~v~~v~ 624 (793)
T PLN00181 558 QVWDVARS-------QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK------TKANICCVQ 624 (793)
T ss_pred EEEECCCC-------eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe------cCCCeEEEE
Confidence 99998742 14456789999999999998666789999999999999999887665542 235688999
Q ss_pred EeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCC------ceeEE
Q 016974 214 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG------HQLQV 287 (379)
Q Consensus 214 ~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~------~~~~~ 287 (379)
|.+.++.++++|+.|+.|++||++.....+..+.+|...|.++.|. ++.+|++++.|++|++||++.+ ..+..
T Consensus 625 ~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~ 703 (793)
T PLN00181 625 FPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHS 703 (793)
T ss_pred EeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEE
Confidence 9777889999999999999999987655567788999999999997 7889999999999999999753 23333
Q ss_pred EeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEec--cc-------ccCCccCceeEEEECCCCCeE
Q 016974 288 YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL--GS-------LQNSHEGRITCLGLSADGSAL 358 (379)
Q Consensus 288 ~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~--~~-------~~~~h~~~v~~~~~s~d~~~l 358 (379)
+. .+...+.+++|+|++++|++|+.||.|++|+......+... .. ....|...|.+++|+|++..|
T Consensus 704 ~~-----gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~l 778 (793)
T PLN00181 704 FM-----GHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTL 778 (793)
T ss_pred Ec-----CCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeE
Confidence 32 12346789999999999999999999999997654332111 00 012456789999999999999
Q ss_pred EEeeCCCcEEEEec
Q 016974 359 CTGSWDTNLKIWAF 372 (379)
Q Consensus 359 ~s~s~D~~i~vw~~ 372 (379)
++|+.||+|+||++
T Consensus 779 va~~~dG~I~i~~~ 792 (793)
T PLN00181 779 VAANSTGNIKILEM 792 (793)
T ss_pred EEecCCCcEEEEec
Confidence 99999999999986
No 22
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=6e-40 Score=279.32 Aligned_cols=290 Identities=22% Similarity=0.383 Sum_probs=241.0
Q ss_pred EeeccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCc--eeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEE
Q 016974 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ--KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIF 136 (379)
Q Consensus 59 ~~~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw 136 (379)
+...+..|.+.|..+.|-++...|++|+.|..|++|+....+ ...++.+..+.+.+++|.++++++++++.|+.+++|
T Consensus 167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLW 246 (459)
T ss_pred hhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeee
Confidence 345778899999999999998999999999999999987665 455677778889999999999999999999999999
Q ss_pred EcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeC
Q 016974 137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG 216 (379)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 216 (379)
++++. ....++.||++.|+++.|..... .+++|+.|.+|++||+....+...+- ....+..+...
T Consensus 247 nvd~~-------r~~~TLsGHtdkVt~ak~~~~~~-~vVsgs~DRtiK~WDl~k~~C~kt~l------~~S~cnDI~~~- 311 (459)
T KOG0288|consen 247 NVDSL-------RLRHTLSGHTDKVTAAKFKLSHS-RVVSGSADRTIKLWDLQKAYCSKTVL------PGSQCNDIVCS- 311 (459)
T ss_pred eccch-------hhhhhhcccccceeeehhhcccc-ceeeccccchhhhhhhhhhheecccc------ccccccceEec-
Confidence 98753 35678999999999999986543 39999999999999999877665431 12234444443
Q ss_pred CCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCC
Q 016974 217 SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENE 296 (379)
Q Consensus 217 ~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~ 296 (379)
...+++|..|+.||+||.+.. ........+ +.|+++..+++|..+.+++.|.++++.|+++....+.+.... -..
T Consensus 312 --~~~~~SgH~DkkvRfwD~Rs~-~~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g-~k~ 386 (459)
T KOG0288|consen 312 --ISDVISGHFDKKVRFWDIRSA-DKTRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEG-FKC 386 (459)
T ss_pred --ceeeeecccccceEEEeccCC-ceeeEeecC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccc-ccc
Confidence 346899999999999999866 455566655 489999999999999999999999999999887776664432 222
Q ss_pred CCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccC-ceeEEEECCCCCeEEEeeCCCcEEEEe
Q 016974 297 IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEG-RITCLGLSADGSALCTGSWDTNLKIWA 371 (379)
Q Consensus 297 ~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~-~v~~~~~s~d~~~l~s~s~D~~i~vw~ 371 (379)
...++.+.|||++.|+++|+.||.|+||++.+++....+.. .+.. .|++++|+|-|..|++++.++.+.+|.
T Consensus 387 asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~---s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 387 ASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSL---STSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEecc---CCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 33589999999999999999999999999999998877642 2333 799999999999999999999999994
No 23
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.1e-37 Score=281.61 Aligned_cols=302 Identities=23% Similarity=0.436 Sum_probs=239.6
Q ss_pred eeEeeccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCce--eeEeecCCcceEEEEECCCCCEEEEeeCCCcEE
Q 016974 57 LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQK--THAIKLPCAWVMTCAFSPTGQSVACGGLDSVCS 134 (379)
Q Consensus 57 ~~~~~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~ 134 (379)
.+..+++.||-+.|.++.|+.|.++|++||.|.++|+|++...+. .+.+.+|...|.++-|..+...+.+.+.||.+.
T Consensus 135 Fvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~ 214 (893)
T KOG0291|consen 135 FVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALF 214 (893)
T ss_pred ceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEE
Confidence 345678999999999999999999999999999999999876665 566778999999999999999999999999999
Q ss_pred EEEcCC--CCCCC----------------CCc-------cee-e-eecccccceEEEEEecCCCceEEEeeCC-------
Q 016974 135 IFNLNS--PTDKD----------------GNL-------PVS-R-MLSGHKGYVSCCQYVPDEDTHLITSSGD------- 180 (379)
Q Consensus 135 iw~~~~--~~~~~----------------~~~-------~~~-~-~~~~h~~~v~~~~~~~~~~~~l~s~~~d------- 180 (379)
+|..+. +.... ++. ... + -+......|++++|++. ...|++|=..
T Consensus 215 ~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~-t~~lvvgFssG~f~Lye 293 (893)
T KOG0291|consen 215 VWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKG-TNLLVVGFSSGEFGLYE 293 (893)
T ss_pred EEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCC-ceEEEEEecCCeeEEEe
Confidence 999872 11000 000 000 0 01111134555555542 1233333333
Q ss_pred ------------------------------------CeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEE
Q 016974 181 ------------------------------------QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS 224 (379)
Q Consensus 181 ------------------------------------~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 224 (379)
|.+-+|+..+...+.. +.+|...+.+++++| ++++++|
T Consensus 294 lP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlK-----QQgH~~~i~~l~YSp-Dgq~iaT 367 (893)
T KOG0291|consen 294 LPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLK-----QQGHSDRITSLAYSP-DGQLIAT 367 (893)
T ss_pred cCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeee-----ccccccceeeEEECC-CCcEEEe
Confidence 4555555544322221 368999999999997 7889999
Q ss_pred ecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEE
Q 016974 225 GSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIA 304 (379)
Q Consensus 225 g~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 304 (379)
|+.||.|+|||.+.. -+..+|..|+..|+.+.|+..|+.+++.|-||+|+.||+...+...++..+. .-...|++
T Consensus 368 G~eDgKVKvWn~~Sg-fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~----p~Qfscva 442 (893)
T KOG0291|consen 368 GAEDGKVKVWNTQSG-FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPE----PIQFSCVA 442 (893)
T ss_pred ccCCCcEEEEeccCc-eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCC----ceeeeEEE
Confidence 999999999999854 5778899999999999999999999999999999999999887777664432 22467999
Q ss_pred EccCCCEEEEEEecC-cEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 305 FSISGRLLFAGYSNG-DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 305 fs~~g~~l~sg~~dg-~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
.+|.|..+++|+.|. .|++|++.+|+....+ ++|++||.+++|+|+|+.|||+|||+|||+|++-+
T Consensus 443 vD~sGelV~AG~~d~F~IfvWS~qTGqllDiL----sGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~ 509 (893)
T KOG0291|consen 443 VDPSGELVCAGAQDSFEIFVWSVQTGQLLDIL----SGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFS 509 (893)
T ss_pred EcCCCCEEEeeccceEEEEEEEeecCeeeehh----cCCCCcceeeEEccccCeEEeccccceEEEEEeec
Confidence 999999999999888 7999999999988877 89999999999999999999999999999999654
No 24
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.4e-37 Score=279.50 Aligned_cols=299 Identities=22% Similarity=0.344 Sum_probs=243.5
Q ss_pred ceeEeeccccccccEEEEEeeCCCCeEEEEcCC-CcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEE
Q 016974 56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQD-GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCS 134 (379)
Q Consensus 56 ~~~~~~~l~gH~~~v~~~~~~~~~~~l~s~s~D-~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~ 134 (379)
+..++..|.--..+|..++|+..|++||-|+.- |.+-||++.....+....+|...+.+++++|||+++|+|+.|+.|+
T Consensus 296 ~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVK 375 (893)
T KOG0291|consen 296 DFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVK 375 (893)
T ss_pred CceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEE
Confidence 344555555556789999999999999987654 8999999998888888889999999999999999999999999999
Q ss_pred EEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEE
Q 016974 135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSI 214 (379)
Q Consensus 135 iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~ 214 (379)
|||..+.. +..++..|+..|+.+.|+..+ +.+++++.||+|+.||+.....-..+. .+......+++.
T Consensus 376 vWn~~Sgf-------C~vTFteHts~Vt~v~f~~~g-~~llssSLDGtVRAwDlkRYrNfRTft----~P~p~Qfscvav 443 (893)
T KOG0291|consen 376 VWNTQSGF-------CFVTFTEHTSGVTAVQFTARG-NVLLSSSLDGTVRAWDLKRYRNFRTFT----SPEPIQFSCVAV 443 (893)
T ss_pred EEeccCce-------EEEEeccCCCceEEEEEEecC-CEEEEeecCCeEEeeeecccceeeeec----CCCceeeeEEEE
Confidence 99987644 567888999999999999865 689999999999999998765544442 233345567777
Q ss_pred eCCCCcEEEEecCCC-cEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCc-eeEEEeecc
Q 016974 215 SGSNSRMFVSGSCDS-TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH-QLQVYYQQH 292 (379)
Q Consensus 215 ~~~~~~~l~sg~~d~-~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~-~~~~~~~~~ 292 (379)
.| .+.+++.|+.|. .|.+|+++++ +.+..+.||+++|.+++|+|.|..|+|+|.|.+||+||+-... .+..+..
T Consensus 444 D~-sGelV~AG~~d~F~IfvWS~qTG-qllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i-- 519 (893)
T KOG0291|consen 444 DP-SGELVCAGAQDSFEIFVWSVQTG-QLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEI-- 519 (893)
T ss_pred cC-CCCEEEeeccceEEEEEEEeecC-eeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEee--
Confidence 76 456788888887 5999999976 7888999999999999999999999999999999999986542 2222211
Q ss_pred CCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccc----------------cCCccCceeEEEECCCCC
Q 016974 293 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSL----------------QNSHEGRITCLGLSADGS 356 (379)
Q Consensus 293 ~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~----------------~~~h~~~v~~~~~s~d~~ 356 (379)
...+..++|+|+|+-||++.-||.|.+||.........+.+. ........+.+++|+||+
T Consensus 520 ----~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~ 595 (893)
T KOG0291|consen 520 ----RSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGK 595 (893)
T ss_pred ----ccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCC
Confidence 234899999999999999999999999997655443222111 012335789999999999
Q ss_pred eEEEeeCCCcEEEEecCc
Q 016974 357 ALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 357 ~l~s~s~D~~i~vw~~~~ 374 (379)
.|++|+..+.|+||++..
T Consensus 596 ~IlAgG~sn~iCiY~v~~ 613 (893)
T KOG0291|consen 596 CILAGGESNSICIYDVPE 613 (893)
T ss_pred EEEecCCcccEEEEECch
Confidence 999999999999999765
No 25
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.8e-38 Score=270.31 Aligned_cols=295 Identities=19% Similarity=0.365 Sum_probs=236.5
Q ss_pred eccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCc---eeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEE
Q 016974 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ---KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFN 137 (379)
Q Consensus 61 ~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~---~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~ 137 (379)
.+|..|+++|+-+.||++|++|||+|.|.++.||++.... ..+++.+|..+|.-+.||||.++|++++.|..+.+||
T Consensus 218 qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwD 297 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWD 297 (519)
T ss_pred hhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeecc
Confidence 4788999999999999999999999999999999875543 3678889999999999999999999999999999999
Q ss_pred cCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCC
Q 016974 138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS 217 (379)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 217 (379)
..++... .....+|...+.+|+|.||+ ..+++|+.|+++..||+.....-.. .......|.+++..+
T Consensus 298 v~tgd~~------~~y~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlDgn~~~~W-----~gvr~~~v~dlait~- 364 (519)
T KOG0293|consen 298 VDTGDLR------HLYPSGLGFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLDGNILGNW-----EGVRDPKVHDLAITY- 364 (519)
T ss_pred CCcchhh------hhcccCcCCCcceeEEccCC-ceeEecCCCCcEEEecCCcchhhcc-----cccccceeEEEEEcC-
Confidence 9864311 11112355789999999986 5699999999999999865432221 122335688888886
Q ss_pred CCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCC
Q 016974 218 NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEI 297 (379)
Q Consensus 218 ~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~ 297 (379)
+++++++...|..|++++.... .... +.....+|++.+.|.||+++++.-.+..+.+||++..+.+..+.. ....
T Consensus 365 Dgk~vl~v~~d~~i~l~~~e~~-~dr~-lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~G---hkq~ 439 (519)
T KOG0293|consen 365 DGKYVLLVTVDKKIRLYNREAR-VDRG-LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFG---HKQG 439 (519)
T ss_pred CCcEEEEEecccceeeechhhh-hhhc-cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhc---cccc
Confidence 6778888889999999987532 1121 223456899999999999999999999999999997666655543 2222
Q ss_pred CCeEEEEEcc-CCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCC-CeEEEeeCCCcEEEEecCce
Q 016974 298 PHVTSIAFSI-SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG-SALCTGSWDTNLKIWAFGGY 375 (379)
Q Consensus 298 ~~v~~~~fs~-~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~-~~l~s~s~D~~i~vw~~~~~ 375 (379)
..+..-+|-. +..++++|++|+.||||+..+++.+.++ .+|...|+|++|+|.. ..+||||.|||||||.....
T Consensus 440 ~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~L----sGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 440 HFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVL----SGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred ceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEee----cCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 3455566765 4479999999999999999999999888 8999999999999954 78999999999999998876
Q ss_pred ee
Q 016974 376 RR 377 (379)
Q Consensus 376 ~~ 377 (379)
.|
T Consensus 516 ~r 517 (519)
T KOG0293|consen 516 NR 517 (519)
T ss_pred cc
Confidence 44
No 26
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.1e-36 Score=242.02 Aligned_cols=274 Identities=19% Similarity=0.320 Sum_probs=225.7
Q ss_pred ceeEeeccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCc--eeeEeecCCcceEEEEECCCCCEEEEeeCCCcE
Q 016974 56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ--KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVC 133 (379)
Q Consensus 56 ~~~~~~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i 133 (379)
.-.|.++++--.+.|+.+...|+++.||+++.- .||+||+.++. ++.++.+|...|.++.|..+|+.+++||.||++
T Consensus 29 tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~ 107 (311)
T KOG0315|consen 29 TGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTV 107 (311)
T ss_pred cCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceE
Confidence 346888888777789999999999999887755 69999998765 478899999999999999999999999999999
Q ss_pred EEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEE
Q 016974 134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 213 (379)
Q Consensus 134 ~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~ 213 (379)
+|||++++. + .....|..+|.++..+|+. ..|++|..+|.|++||+....+...+- +.....+.++.
T Consensus 108 kIWdlR~~~-------~-qR~~~~~spVn~vvlhpnQ-teLis~dqsg~irvWDl~~~~c~~~li----Pe~~~~i~sl~ 174 (311)
T KOG0315|consen 108 KIWDLRSLS-------C-QRNYQHNSPVNTVVLHPNQ-TELISGDQSGNIRVWDLGENSCTHELI----PEDDTSIQSLT 174 (311)
T ss_pred EEEeccCcc-------c-chhccCCCCcceEEecCCc-ceEEeecCCCcEEEEEccCCccccccC----CCCCcceeeEE
Confidence 999998632 2 2334577899999999976 469999999999999998775544332 23346788998
Q ss_pred EeCCCCcEEEEecCCCcEEEEEccCC-----ccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEE
Q 016974 214 ISGSNSRMFVSGSCDSTARLWDTRVA-----SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY 288 (379)
Q Consensus 214 ~~~~~~~~l~sg~~d~~i~vwd~~~~-----~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~ 288 (379)
..+ ++.+++.+...|.+.+|++-.. -.++..+++|++.+....+|||+++||++|.|.+++||+..+.-.+...
T Consensus 175 v~~-dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~ 253 (311)
T KOG0315|consen 175 VMP-DGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELV 253 (311)
T ss_pred EcC-CCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEE
Confidence 886 7788888999999999997542 1356678999999999999999999999999999999998865222222
Q ss_pred eeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEEC
Q 016974 289 YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 352 (379)
Q Consensus 289 ~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s 352 (379)
. ..+..++..++||.||+||++|+.|+.+++||+..++.+... .+|-.+..|++..
T Consensus 254 l----~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy----~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 254 L----TGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQY----QGHHKAAVCVALN 309 (311)
T ss_pred e----ecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeec----CCcccccEEEEee
Confidence 2 223468999999999999999999999999999999988776 5677777777754
No 27
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.5e-37 Score=243.48 Aligned_cols=284 Identities=22% Similarity=0.348 Sum_probs=237.1
Q ss_pred eccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCC
Q 016974 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS 140 (379)
Q Consensus 61 ~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~ 140 (379)
+.|..|+++|.++.|+-||++.++|+.|++||+|+...+..++++.+|...|..++.+.|+..++++|.|+.+.+||+++
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T 90 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT 90 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEccc
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCC--eeEEEecCccccCCccCeEEEEEeCCC
Q 016974 141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSN 218 (379)
Q Consensus 141 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~--~~~~~~~~~~~~~h~~~v~~~~~~~~~ 218 (379)
+. +.+.+.||.+.|..++|+.+ ...+++|+.|.++++||.++. .+++.+ ....+.|.++....
T Consensus 91 Gk-------v~Rr~rgH~aqVNtV~fNee-sSVv~SgsfD~s~r~wDCRS~s~ePiQil-----dea~D~V~Si~v~~-- 155 (307)
T KOG0316|consen 91 GK-------VDRRFRGHLAQVNTVRFNEE-SSVVASGSFDSSVRLWDCRSRSFEPIQIL-----DEAKDGVSSIDVAE-- 155 (307)
T ss_pred Ce-------eeeecccccceeeEEEecCc-ceEEEeccccceeEEEEcccCCCCccchh-----hhhcCceeEEEecc--
Confidence 43 66789999999999999865 468999999999999999864 233333 34567788888764
Q ss_pred CcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCC
Q 016974 219 SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP 298 (379)
Q Consensus 219 ~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~ 298 (379)
..+++|+.||++|.||++.. .......+ .+|+++.|++||+..+.++.|+++++.|-.+|+.++.+.... ...
T Consensus 156 -heIvaGS~DGtvRtydiR~G-~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhk---n~e 228 (307)
T KOG0316|consen 156 -HEIVAGSVDGTVRTYDIRKG-TLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHK---NME 228 (307)
T ss_pred -cEEEeeccCCcEEEEEeecc-eeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccc---cce
Confidence 57889999999999999966 33333333 479999999999999999999999999999999887765422 233
Q ss_pred CeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCc-eeEEEECCCCCeEEEeeCCCcEEEEe
Q 016974 299 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGR-ITCLGLSADGSALCTGSWDTNLKIWA 371 (379)
Q Consensus 299 ~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~-v~~~~~s~d~~~l~s~s~D~~i~vw~ 371 (379)
.-..++++.....+++|++||.|++||+.....+..+ ..|... |.++++.|.-.-++++. ++.+..|.
T Consensus 229 ykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~----~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~ 297 (307)
T KOG0316|consen 229 YKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKL----SVVSTVIVTDLSCHPTMDDFITAT-GHGDLFWY 297 (307)
T ss_pred eeeeeeecccceeEEeccCCceEEEEEeccceeeeee----ccCCceeEEeeecccCccceeEec-CCceecee
Confidence 4467788888899999999999999999888887776 445555 89999999766666553 44555664
No 28
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-37 Score=274.97 Aligned_cols=287 Identities=23% Similarity=0.382 Sum_probs=253.3
Q ss_pred eeccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcC
Q 016974 60 CRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLN 139 (379)
Q Consensus 60 ~~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~ 139 (379)
.++|..|...|-+++|+|...+++++=..|.|.|||.++...++.+.....+|.++.|-+-.+.+++|++|..|+||+.+
T Consensus 6 krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn 85 (794)
T KOG0276|consen 6 KRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYN 85 (794)
T ss_pred hhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecc
Confidence 35677799999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCee-EEEecCccccCCccCeEEEEEeCCC
Q 016974 140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-TSVFGGEFQSGHTADVLSVSISGSN 218 (379)
Q Consensus 140 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~ 218 (379)
+. .....+..|.+.|.+++.+|..+ +++++|.|-+|++||-..+.. ...+ .+|.--|..++|+|.+
T Consensus 86 t~-------ekV~~FeAH~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~~wa~~qtf-----eGH~HyVMqv~fnPkD 152 (794)
T KOG0276|consen 86 TG-------EKVKTFEAHSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWENEWACEQTF-----EGHEHYVMQVAFNPKD 152 (794)
T ss_pred cc-------eeeEEeeccccceeeeeecCCCC-eEEecCCccEEEEeeccCceeeeeEE-----cCcceEEEEEEecCCC
Confidence 53 35567889999999999999864 799999999999999987633 3344 6899999999999999
Q ss_pred CcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCC--CEEEEeeCCCeEEEEECCCCceeEEEeeccCCCC
Q 016974 219 SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG--NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENE 296 (379)
Q Consensus 219 ~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g--~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~ 296 (379)
.+.|+|++.|++|++|.+..+ .+..+++||+..|+||.|-|.| .||+||++|.+|||||.++..+++++.. |
T Consensus 153 ~ntFaS~sLDrTVKVWslgs~-~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeG-----H 226 (794)
T KOG0276|consen 153 PNTFASASLDRTVKVWSLGSP-HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEG-----H 226 (794)
T ss_pred ccceeeeeccccEEEEEcCCC-CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhc-----c
Confidence 999999999999999999855 6788999999999999998855 5899999999999999999888776633 3
Q ss_pred CCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEE
Q 016974 297 IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKI 369 (379)
Q Consensus 297 ~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~v 369 (379)
...|+.+.|.|.=..+++|++||+++||...+.+...++ ...-++|+|++-.+.+..++.|...|.|.+
T Consensus 227 t~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tL----n~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 227 TNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTL----NYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred cccceEEEecCCCcEEEEecCCccEEEecCcceehhhhh----hcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 446999999999999999999999999998888877666 445678999999998888998988887643
No 29
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.5e-37 Score=278.92 Aligned_cols=302 Identities=22% Similarity=0.336 Sum_probs=258.5
Q ss_pred cceeEeeccccccccEEEEEe-eCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcE
Q 016974 55 TDLVCCRTLQGHAGKVYSLDW-TSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVC 133 (379)
Q Consensus 55 ~~~~~~~~l~gH~~~v~~~~~-~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i 133 (379)
..+...+.+-|.++.|.++.| .|+.++||.++..+.+|+++..+..+. .+.+|...|.+++...+|.+|+++|.|..+
T Consensus 311 ~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~sv 389 (775)
T KOG0319|consen 311 DELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSV 389 (775)
T ss_pred cccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceE
Confidence 445566788899999999987 467789999999999999988766654 778999999999977788999999999999
Q ss_pred EEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeE---EEec-CccccCCccCe
Q 016974 134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT---SVFG-GEFQSGHTADV 209 (379)
Q Consensus 134 ~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~---~~~~-~~~~~~h~~~v 209 (379)
++|.++++. .+..+.....||++.|.+++++..+..+|+++|.|+++++|++...... ..+. ......|...|
T Consensus 390 ilWr~~~~~---~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdI 466 (775)
T KOG0319|consen 390 ILWRLNNNC---SKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDI 466 (775)
T ss_pred EEEEecCCc---chhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccc
Confidence 999995432 2223445567999999999998777789999999999999998752111 1111 11235799999
Q ss_pred EEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEe
Q 016974 210 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY 289 (379)
Q Consensus 210 ~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~ 289 (379)
++++++| +.++++|||+|++.++|++. ......++.||.-.|++|.|+|..+.++|+|.|++||||.+.+..+++++.
T Consensus 467 N~Vaia~-ndkLiAT~SqDktaKiW~le-~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~e 544 (775)
T KOG0319|consen 467 NCVAIAP-NDKLIATGSQDKTAKIWDLE-QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFE 544 (775)
T ss_pred cceEecC-CCceEEecccccceeeeccc-CceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeec
Confidence 9999998 56799999999999999998 446788999999999999999999999999999999999999999998874
Q ss_pred eccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEE
Q 016974 290 QQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKI 369 (379)
Q Consensus 290 ~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~v 369 (379)
. |...|..+.|-.+|+.|+++++||-|++|++.+.....++ ..|++.|++++-+|.+.+++||+.||.|.+
T Consensus 545 G-----H~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tl----D~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~ 615 (775)
T KOG0319|consen 545 G-----HTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTL----DAHNDRVWALSVSPLLDMFVTGGGDGRIIF 615 (775)
T ss_pred C-----ccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhh----hhccceeEEEeecCccceeEecCCCeEEEE
Confidence 3 3456999999999999999999999999999999888887 789999999999999999999999999999
Q ss_pred Ee
Q 016974 370 WA 371 (379)
Q Consensus 370 w~ 371 (379)
|.
T Consensus 616 wk 617 (775)
T KOG0319|consen 616 WK 617 (775)
T ss_pred ee
Confidence 95
No 30
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.5e-36 Score=253.63 Aligned_cols=288 Identities=18% Similarity=0.307 Sum_probs=237.7
Q ss_pred eeccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcC
Q 016974 60 CRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLN 139 (379)
Q Consensus 60 ~~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~ 139 (379)
..+|..|+++|++++.+|+.++++||+.|....+|+..++.....+.+|...|.++.|+.+|.+||+|+.+|.++||...
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s 136 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS 136 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcc
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCC
Q 016974 140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 219 (379)
Q Consensus 140 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 219 (379)
.+.. ...+..-...+..+.|+|.. ..|+.|+.||.+-+|.+.++...+.+ .+|..++.+=.|.| ++
T Consensus 137 tg~~-------~~~~~~e~~dieWl~WHp~a-~illAG~~DGsvWmw~ip~~~~~kv~-----~Gh~~~ct~G~f~p-dG 202 (399)
T KOG0296|consen 137 TGGE-------QWKLDQEVEDIEWLKWHPRA-HILLAGSTDGSVWMWQIPSQALCKVM-----SGHNSPCTCGEFIP-DG 202 (399)
T ss_pred cCce-------EEEeecccCceEEEEecccc-cEEEeecCCCcEEEEECCCcceeeEe-----cCCCCCcccccccC-CC
Confidence 6431 12233344567889999964 68999999999999999886555555 68999999999987 58
Q ss_pred cEEEEecCCCcEEEEEccCCccceEEE-------------------------------------------e--------c
Q 016974 220 RMFVSGSCDSTARLWDTRVASRAVRTF-------------------------------------------H--------G 248 (379)
Q Consensus 220 ~~l~sg~~d~~i~vwd~~~~~~~~~~~-------------------------------------------~--------~ 248 (379)
+.++++..||+|++|+..+.. ++..+ . .
T Consensus 203 Kr~~tgy~dgti~~Wn~ktg~-p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~ 281 (399)
T KOG0296|consen 203 KRILTGYDDGTIIVWNPKTGQ-PLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPS 281 (399)
T ss_pred ceEEEEecCceEEEEecCCCc-eeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCcccccc
Confidence 899999999999999987542 11111 1 1
Q ss_pred ccCCeeEEEEcc---CCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEe
Q 016974 249 HEGDVNTVKFFP---DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD 325 (379)
Q Consensus 249 h~~~v~~v~~sp---~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd 325 (379)
++..+.+|.+.| .-.+.|+|+.||+|-|||+.......... +...|..+.|-+ ..+|++++.+|.|+.||
T Consensus 282 ~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~------he~~V~~l~w~~-t~~l~t~c~~g~v~~wD 354 (399)
T KOG0296|consen 282 QEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE------HEDGVTKLKWLN-TDYLLTACANGKVRQWD 354 (399)
T ss_pred chhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc------CCCceEEEEEcC-cchheeeccCceEEeee
Confidence 222233444433 44567899999999999998765543331 223599999998 78999999999999999
Q ss_pred CCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecC
Q 016974 326 TLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 373 (379)
Q Consensus 326 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~ 373 (379)
.+++....++ .+|...|.+++++|+.++++|+|.|++.+||.+.
T Consensus 355 aRtG~l~~~y----~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 355 ARTGQLKFTY----TGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred ccccceEEEE----ecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999988887 7899999999999999999999999999999863
No 31
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.4e-37 Score=284.65 Aligned_cols=209 Identities=29% Similarity=0.530 Sum_probs=194.6
Q ss_pred EeeccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEc
Q 016974 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNL 138 (379)
Q Consensus 59 ~~~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~ 138 (379)
..++|.||.++|+.+.|+|+.++|+|||.|++||+|.+.+..++..+++|..+|..+.|+|-|-|+|++|.|++.++|..
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~ 522 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWST 522 (707)
T ss_pred eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeec
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCC
Q 016974 139 NSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN 218 (379)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 218 (379)
+.. ...+.+.||-..|.|+.|+|+. .++++||.|++|++||+.+|.....+ .||..+|.+++++| .
T Consensus 523 d~~-------~PlRifaghlsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~VRiF-----~GH~~~V~al~~Sp-~ 588 (707)
T KOG0263|consen 523 DHN-------KPLRIFAGHLSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNSVRIF-----TGHKGPVTALAFSP-C 588 (707)
T ss_pred ccC-------CchhhhcccccccceEEECCcc-cccccCCCCceEEEEEcCCCcEEEEe-----cCCCCceEEEEEcC-C
Confidence 642 2467899999999999999975 78999999999999999999988888 78999999999998 8
Q ss_pred CcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCC
Q 016974 219 SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG 282 (379)
Q Consensus 219 ~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~ 282 (379)
+++|++|+.|+.|++||+... ..+..+.+|++.|+++.|+++|..||+|+.|.+|++||+.+-
T Consensus 589 Gr~LaSg~ed~~I~iWDl~~~-~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 589 GRYLASGDEDGLIKIWDLANG-SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred CceEeecccCCcEEEEEcCCC-cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 899999999999999999865 567788999999999999999999999999999999998753
No 32
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=5.5e-36 Score=244.81 Aligned_cols=238 Identities=21% Similarity=0.416 Sum_probs=207.3
Q ss_pred ccEEEEEeeCCCCeEEEEcCCCcEEEEECCCC------ceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCC
Q 016974 68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTS------QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSP 141 (379)
Q Consensus 68 ~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~------~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~ 141 (379)
.-|..++|+|.|+.+|.|+.|...-||++.+. .....+.+|.+.+.+|.|.+ ...|+++|.|.++.+||+.+.
T Consensus 98 ~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g 176 (343)
T KOG0286|consen 98 SWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETG 176 (343)
T ss_pred eeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccc
Confidence 45889999999999999999999999999855 23456788999999999998 557889999999999999764
Q ss_pred CCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcE
Q 016974 142 TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRM 221 (379)
Q Consensus 142 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 221 (379)
. ....+.||.+.|.++.++|.+.+.+++|+-|++.++||++.+.+.+.| .+|...|.++.|+| ++.-
T Consensus 177 ~-------~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF-----~ghesDINsv~ffP-~G~a 243 (343)
T KOG0286|consen 177 Q-------QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTF-----EGHESDINSVRFFP-SGDA 243 (343)
T ss_pred e-------EEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEee-----cccccccceEEEcc-CCCe
Confidence 3 456788999999999999976789999999999999999999988888 78999999999998 6678
Q ss_pred EEEecCCCcEEEEEccCCccceEEEec--ccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCC
Q 016974 222 FVSGSCDSTARLWDTRVASRAVRTFHG--HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299 (379)
Q Consensus 222 l~sg~~d~~i~vwd~~~~~~~~~~~~~--h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 299 (379)
|++|+.|+++|+||+|.. +.+..+.. -...|++++||..|++|.+|..|.++.+||.-+++.+..+.. |...
T Consensus 244 fatGSDD~tcRlyDlRaD-~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~G-----HeNR 317 (343)
T KOG0286|consen 244 FATGSDDATCRLYDLRAD-QELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAG-----HENR 317 (343)
T ss_pred eeecCCCceeEEEeecCC-cEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeec-----cCCe
Confidence 999999999999999965 44555542 235799999999999999999999999999988887766643 2346
Q ss_pred eEEEEEccCCCEEEEEEecCcEEEEe
Q 016974 300 VTSIAFSISGRLLFAGYSNGDCYVWD 325 (379)
Q Consensus 300 v~~~~fs~~g~~l~sg~~dg~i~iwd 325 (379)
|+++..+|||..|++|+-|..++||.
T Consensus 318 vScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 318 VSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eEEEEECCCCcEEEecchhHheeecC
Confidence 99999999999999999999999993
No 33
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-36 Score=276.44 Aligned_cols=306 Identities=25% Similarity=0.385 Sum_probs=248.4
Q ss_pred eEeeccccccccEEEEEeeCCCC--eEEEEcCCCcEEEEECCCCce-eeEeecCCcceEEEEECCCCCEEEEeeCCCcEE
Q 016974 58 VCCRTLQGHAGKVYSLDWTSERN--RIVSASQDGRLIVWNALTSQK-THAIKLPCAWVMTCAFSPTGQSVACGGLDSVCS 134 (379)
Q Consensus 58 ~~~~~l~gH~~~v~~~~~~~~~~--~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~ 134 (379)
.|...|+||.+.|.++.|+|+-+ .|++|..|+++++||+.+... ++.+..|...|++++|++++..++++|.|..+.
T Consensus 138 ~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~ 217 (775)
T KOG0319|consen 138 YCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVII 217 (775)
T ss_pred EEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEE
Confidence 47789999999999999999754 489999999999999986554 788889999999999999999999999999999
Q ss_pred EEEcCCCC----------------------------------------------------CCCC----------------
Q 016974 135 IFNLNSPT----------------------------------------------------DKDG---------------- 146 (379)
Q Consensus 135 iw~~~~~~----------------------------------------------------~~~~---------------- 146 (379)
|||+..-. .+++
T Consensus 218 vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l 297 (775)
T KOG0319|consen 218 VWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLL 297 (775)
T ss_pred EeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceE
Confidence 99864210 0000
Q ss_pred ----------------------------------------------Ccc----------eeeeecccccceEEEEEecCC
Q 016974 147 ----------------------------------------------NLP----------VSRMLSGHKGYVSCCQYVPDE 170 (379)
Q Consensus 147 ----------------------------------------------~~~----------~~~~~~~h~~~v~~~~~~~~~ 170 (379)
+.+ -...+.||+..|.++....++
T Consensus 298 ~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g 377 (775)
T KOG0319|consen 298 LVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSG 377 (775)
T ss_pred EEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccC
Confidence 000 013456888888888743333
Q ss_pred CceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCcc----ceE--
Q 016974 171 DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR----AVR-- 244 (379)
Q Consensus 171 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~----~~~-- 244 (379)
-+|++|+.|+++++|.+..+... ......-.+|...|.+++++.....+|+++|.|++|++|+++.... ...
T Consensus 378 -~llat~sKD~svilWr~~~~~~~-~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~ 455 (775)
T KOG0319|consen 378 -DLLATGSKDKSVILWRLNNNCSK-SLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTC 455 (775)
T ss_pred -cEEEEecCCceEEEEEecCCcch-hhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehh
Confidence 58999999999999988543221 1111122689999999999888888999999999999999875211 111
Q ss_pred --EEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEE
Q 016974 245 --TFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCY 322 (379)
Q Consensus 245 --~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~ 322 (379)
....|...|++|+++|+...|||||.|++.+||++..+....++.. |...|.++.|+|..+.+++++.|++|+
T Consensus 456 ~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsG-----H~RGvw~V~Fs~~dq~laT~SgD~TvK 530 (775)
T KOG0319|consen 456 RYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSG-----HTRGVWCVSFSKNDQLLATCSGDKTVK 530 (775)
T ss_pred hHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeC-----CccceEEEEeccccceeEeccCCceEE
Confidence 3357999999999999999999999999999999997666555533 334699999999999999999999999
Q ss_pred EEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 323 VWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 323 iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
||.+.+.....++ .+|+..|..+.|-.+|+.|+|++.||.||+|++..
T Consensus 531 IW~is~fSClkT~----eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt 578 (775)
T KOG0319|consen 531 IWSISTFSCLKTF----EGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKT 578 (775)
T ss_pred EEEeccceeeeee----cCccceeEeeeeeeCCcEEEeccCCCcEEEEeccc
Confidence 9999999988888 78999999999999999999999999999999865
No 34
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.5e-36 Score=249.62 Aligned_cols=302 Identities=25% Similarity=0.379 Sum_probs=252.9
Q ss_pred EeeccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEc
Q 016974 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNL 138 (379)
Q Consensus 59 ~~~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~ 138 (379)
..+.|.||.+.|+.++-....+.+.++|.|.+.+||.++++.++.++.+|.+.|.+++|++.+.++++++.|++..||..
T Consensus 140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~ 219 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKA 219 (481)
T ss_pred ehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHH
Confidence 45689999999999998777788999999999999999999999999999999999999999999999999999999982
Q ss_pred C------CCC---C----------------CCC----C----cceeeeecccccceEEEEEecCCCceEEEeeCCCeEEE
Q 016974 139 N------SPT---D----------------KDG----N----LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVL 185 (379)
Q Consensus 139 ~------~~~---~----------------~~~----~----~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~ 185 (379)
. .+. . .++ . ......+.||.+.|.++.|... +..++++++|++-.+
T Consensus 220 av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~g-g~Q~vTaSWDRTAnl 298 (481)
T KOG0300|consen 220 AVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAG-GQQMVTASWDRTANL 298 (481)
T ss_pred hhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcC-cceeeeeecccccee
Confidence 1 110 0 000 0 0112457899999999999875 467999999999999
Q ss_pred eecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEE
Q 016974 186 WDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF 265 (379)
Q Consensus 186 wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l 265 (379)
||++++..+..+ .+|....+.++.+| .++++++.+.|-+.|+||++..-..+..|+||...|+++.|..+ ..+
T Consensus 299 wDVEtge~v~~L-----tGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~v 371 (481)
T KOG0300|consen 299 WDVETGEVVNIL-----TGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRV 371 (481)
T ss_pred eeeccCceeccc-----cCcchhccccccCC-cceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-Cce
Confidence 999999887776 78988898888886 78899999999999999999776778899999999999999865 569
Q ss_pred EEeeCCCeEEEEECCCCce-eEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccC
Q 016974 266 GTGSDDGTCRLFDIRTGHQ-LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEG 344 (379)
Q Consensus 266 ~s~s~D~~i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~ 344 (379)
++||+|.+|++||+++.+. +..+. ...+++.++.+..++.|+.-.++..|++||+...+......+...+|..
T Consensus 372 VSgSDDrTvKvWdLrNMRsplATIR------tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrR 445 (481)
T KOG0300|consen 372 VSGSDDRTVKVWDLRNMRSPLATIR------TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRR 445 (481)
T ss_pred eecCCCceEEEeeeccccCcceeee------cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccce
Confidence 9999999999999987542 33332 1346889999999999999999999999998766655544445578999
Q ss_pred ceeEEEECCC--CCeEEEeeCCCcEEEEecCc
Q 016974 345 RITCLGLSAD--GSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 345 ~v~~~~~s~d--~~~l~s~s~D~~i~vw~~~~ 374 (379)
.|.|++|..+ -.-|++++.|..+.=|.++-
T Consensus 446 MV~c~AW~eehp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 446 MVTCCAWLEEHPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred eeeeeeccccCcccccccccccceeeeeEecc
Confidence 9999999743 35688999999999998764
No 35
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.8e-38 Score=263.88 Aligned_cols=278 Identities=24% Similarity=0.395 Sum_probs=228.5
Q ss_pred ccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCC
Q 016974 66 HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD 145 (379)
Q Consensus 66 H~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~ 145 (379)
..+.|+|+.+ |...++||..|.+|+|||..+.++...+.+|.+.|.++.|. .+.+++|+.|.+|+|||+++..
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge--- 268 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGE--- 268 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCc---
Confidence 3457999987 45589999999999999999999999999999999998876 4599999999999999998643
Q ss_pred CCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEe
Q 016974 146 GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG 225 (379)
Q Consensus 146 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg 225 (379)
...++.+|...|..+.|+. .++++++.|.++.+||+........ .....+|.+.|..+.|+. ++++++
T Consensus 269 ----~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~--rrVLvGHrAaVNvVdfd~---kyIVsA 336 (499)
T KOG0281|consen 269 ----PLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITL--RRVLVGHRAAVNVVDFDD---KYIVSA 336 (499)
T ss_pred ----hhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHH--HHHHhhhhhheeeecccc---ceEEEe
Confidence 4567889999999999963 5899999999999999976532211 122368999999999864 599999
Q ss_pred cCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEE
Q 016974 226 SCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF 305 (379)
Q Consensus 226 ~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~f 305 (379)
+.|.+|++|++.+. ..++++.||.-.|-|+++ .|+++++||.|.+|++||+..|..+..+.. +..-|.++.|
T Consensus 337 SgDRTikvW~~st~-efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeG-----HEeLvRciRF 408 (499)
T KOG0281|consen 337 SGDRTIKVWSTSTC-EFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEG-----HEELVRCIRF 408 (499)
T ss_pred cCCceEEEEeccce-eeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhc-----hHHhhhheee
Confidence 99999999999865 678899999999999887 578999999999999999999988766533 2235889999
Q ss_pred ccCCCEEEEEEecCcEEEEeCCCceEEEec-----ccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 306 SISGRLLFAGYSNGDCYVWDTLLAKVVLNL-----GSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 306 s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~-----~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
+ .+.|++|..||+|++||+.++...... ......|++.|..+.|. .-.+++++.|.+|.||+|..
T Consensus 409 d--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~ 478 (499)
T KOG0281|consen 409 D--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFLN 478 (499)
T ss_pred c--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcCC
Confidence 4 678999999999999998654322111 01125689999999985 56889999999999999854
No 36
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-35 Score=238.93 Aligned_cols=292 Identities=19% Similarity=0.267 Sum_probs=234.1
Q ss_pred ccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCC
Q 016974 62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSP 141 (379)
Q Consensus 62 ~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~ 141 (379)
.|+||..+++.+.++.+|.+|+||+.|.++.+|-...|+.+-++.+|.+.|.+|+.+-+.+.+++|+.|.++++||+.++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 58899999999999999999999999999999999899999999999999999999999999999999999999999764
Q ss_pred CCCCCCcceeeeecccccceEEEEEecCCCceEEE----eeCCCeEEEeecCCC-------eeEEEecCccccCCccCeE
Q 016974 142 TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLIT----SSGDQTCVLWDITTG-------LRTSVFGGEFQSGHTADVL 210 (379)
Q Consensus 142 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s----~~~d~~i~~wd~~~~-------~~~~~~~~~~~~~h~~~v~ 210 (379)
. ....+ .-..+|..+.|++.+...+++ -+..+.|.++|++.. .+...+ ..+...++
T Consensus 85 k-------~la~~-k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI-----~t~~skit 151 (327)
T KOG0643|consen 85 K-------QLATW-KTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKI-----PTPDSKIT 151 (327)
T ss_pred c-------EEEEe-ecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEe-----cCCcccee
Confidence 3 11111 123568889999876433333 234567999998742 222222 23456788
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEee
Q 016974 211 SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ 290 (379)
Q Consensus 211 ~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~ 290 (379)
..-|.+ -++.+++|..||.|..||.++..+.+..-+.|...|+.++++||..+++++|.|.+-++||+++...++.+..
T Consensus 152 ~a~Wg~-l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t 230 (327)
T KOG0643|consen 152 SALWGP-LGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT 230 (327)
T ss_pred eeeecc-cCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee
Confidence 888887 5678999999999999999988777877788999999999999999999999999999999999888887754
Q ss_pred ccCCCCCCCeEEEEEccCCCEEEEEEecCc--EEEEeCCCceEEE---------ecccccCCccCceeEEEECCCCCeEE
Q 016974 291 QHGENEIPHVTSIAFSISGRLLFAGYSNGD--CYVWDTLLAKVVL---------NLGSLQNSHEGRITCLGLSADGSALC 359 (379)
Q Consensus 291 ~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~--i~iwd~~~~~~~~---------~~~~~~~~h~~~v~~~~~s~d~~~l~ 359 (379)
. .+|++.+++|....++.|+.-.. |.-=+.+.++... +++. .++|.+||++++|+|||+..+
T Consensus 231 e------~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigr-vkGHFGPINsvAfhPdGksYs 303 (327)
T KOG0643|consen 231 E------RPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGR-VKGHFGPINSVAFHPDGKSYS 303 (327)
T ss_pred c------ccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcc-ccccccCcceeEECCCCcccc
Confidence 2 36899999998887777653322 2222222232111 1222 278999999999999999999
Q ss_pred EeeCCCcEEEEecCc
Q 016974 360 TGSWDTNLKIWAFGG 374 (379)
Q Consensus 360 s~s~D~~i~vw~~~~ 374 (379)
||+.||.||+..|++
T Consensus 304 SGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 304 SGGEDGYVRLHHFDS 318 (327)
T ss_pred cCCCCceEEEEEecc
Confidence 999999999998876
No 37
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=4.6e-37 Score=256.63 Aligned_cols=252 Identities=26% Similarity=0.503 Sum_probs=210.7
Q ss_pred cceeEeeccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEE
Q 016974 55 TDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCS 134 (379)
Q Consensus 55 ~~~~~~~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~ 134 (379)
.+..|.+.|.||++.|.|+.| +.+.|+|||.|.+|+|||+++++++.++-.|+..|..+.|+ ..++++++.|..+.
T Consensus 225 n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsia 300 (499)
T KOG0281|consen 225 NSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIA 300 (499)
T ss_pred ccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeE
Confidence 345677899999999999998 45699999999999999999999999999999999999987 46899999999999
Q ss_pred EEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEE
Q 016974 135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSI 214 (379)
Q Consensus 135 iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~ 214 (379)
+||+.++. ...+.+.+.||..+|..+.|. ++++++++.|++|++|++.++..+..+ .+|.-.|.++.+
T Consensus 301 VWdm~sps----~it~rrVLvGHrAaVNvVdfd---~kyIVsASgDRTikvW~~st~efvRtl-----~gHkRGIAClQY 368 (499)
T KOG0281|consen 301 VWDMASPT----DITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWSTSTCEFVRTL-----NGHKRGIACLQY 368 (499)
T ss_pred EEeccCch----HHHHHHHHhhhhhheeeeccc---cceEEEecCCceEEEEeccceeeehhh-----hcccccceehhc
Confidence 99998765 234667889999999999985 358999999999999999998887776 688888888876
Q ss_pred eCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEE----ee
Q 016974 215 SGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY----YQ 290 (379)
Q Consensus 215 ~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~----~~ 290 (379)
.++++++|+.|.+||+||+..+ ..++.++||+.-|.++.| |.+.+++|+.||+|++||+..+...... ..
T Consensus 369 ---r~rlvVSGSSDntIRlwdi~~G-~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl 442 (499)
T KOG0281|consen 369 ---RDRLVVSGSSDNTIRLWDIECG-ACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCL 442 (499)
T ss_pred ---cCeEEEecCCCceEEEEecccc-HHHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHH
Confidence 4579999999999999999854 778899999999999999 5678999999999999999876432110 00
Q ss_pred ccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCce
Q 016974 291 QHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK 330 (379)
Q Consensus 291 ~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~ 330 (379)
.+...+.+.|..+.|+ ..-|++.+.|.+|.|||...+.
T Consensus 443 ~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 443 RTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred HhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcCCCC
Confidence 0111234568889985 4578888899999999976553
No 38
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=5.9e-36 Score=239.59 Aligned_cols=287 Identities=21% Similarity=0.325 Sum_probs=240.2
Q ss_pred ccccccccEEEEEeeC---CCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEc
Q 016974 62 TLQGHAGKVYSLDWTS---ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNL 138 (379)
Q Consensus 62 ~l~gH~~~v~~~~~~~---~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~ 138 (379)
+..||+.+|-.++|+| +|-+|+|++.|+.-.+-+-.+|.-+-++.+|.+.|.++..+.+....|+++.|-+.++||.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a 88 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA 88 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence 4679999999999986 7778999999999999998999999999999999999999999999999999999999997
Q ss_pred CCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCC
Q 016974 139 NSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN 218 (379)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 218 (379)
-+.. ..+ ...|+..|.+|+|+.+. ++|++|+.++.++++|++....... + ..+|...|..+.|...+
T Consensus 89 ~tgd-------elh-sf~hkhivk~~af~~ds-~~lltgg~ekllrvfdln~p~App~---E-~~ghtg~Ir~v~wc~eD 155 (334)
T KOG0278|consen 89 VTGD-------ELH-SFEHKHIVKAVAFSQDS-NYLLTGGQEKLLRVFDLNRPKAPPK---E-ISGHTGGIRTVLWCHED 155 (334)
T ss_pred hhhh-------hhh-hhhhhheeeeEEecccc-hhhhccchHHHhhhhhccCCCCCch---h-hcCCCCcceeEEEeccC
Confidence 5432 112 23588889999999864 6799999999999999976532111 1 16899999999998755
Q ss_pred CcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCC
Q 016974 219 SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP 298 (379)
Q Consensus 219 ~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~ 298 (379)
+.+++.+.|++||+||.++. ..++.+. .+.+|+++.++++|++|.+ ...++|++||..+-..++.+..+ .
T Consensus 156 -~~iLSSadd~tVRLWD~rTg-t~v~sL~-~~s~VtSlEvs~dG~ilTi-a~gssV~Fwdaksf~~lKs~k~P------~ 225 (334)
T KOG0278|consen 156 -KCILSSADDKTVRLWDHRTG-TEVQSLE-FNSPVTSLEVSQDGRILTI-AYGSSVKFWDAKSFGLLKSYKMP------C 225 (334)
T ss_pred -ceEEeeccCCceEEEEeccC-cEEEEEe-cCCCCcceeeccCCCEEEE-ecCceeEEeccccccceeeccCc------c
Confidence 46677799999999999976 4455554 4678999999999986654 56678999999987777665432 3
Q ss_pred CeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 299 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 299 ~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
.|.+.+.+|+..++++|+.|..++.||..++..+... .++|.++|-|+.|+|||...|+||.||+||||..+-
T Consensus 226 nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~---nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 226 NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY---NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred ccccccccCCCceEEecCcceEEEEEeccCCceeeec---ccCCCCceEEEEECCCCceeeccCCCceEEEEEecC
Confidence 4889999999999999999999999999988766542 378999999999999999999999999999998764
No 39
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=8.5e-35 Score=245.59 Aligned_cols=291 Identities=21% Similarity=0.298 Sum_probs=229.1
Q ss_pred cccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCC---CEEEEeeCCCcEEEEEcCCC
Q 016974 65 GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG---QSVACGGLDSVCSIFNLNSP 141 (379)
Q Consensus 65 gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g---~~l~~~~~d~~i~iw~~~~~ 141 (379)
-|.+-|.++... +++|+||+.||++++||.. |+..+++.+|.+.+.++++-... ..++++|.|.++++|.++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 388888888876 6799999999999999965 89999999999999988875433 36999999999999999864
Q ss_pred CCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEE-----E-------e--------cCcc
Q 016974 142 TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS-----V-------F--------GGEF 201 (379)
Q Consensus 142 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-----~-------~--------~~~~ 201 (379)
... ........||...|-+++..+++ ..+++|+.|.++++|+..+..... . . +...
T Consensus 180 ~~~---~~~~~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vt 255 (423)
T KOG0313|consen 180 ENK---VKALKVCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVT 255 (423)
T ss_pred hhh---hhHHhHhcccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEE
Confidence 322 11223344999999999998875 579999999999999943211000 0 0 0011
Q ss_pred ccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCC
Q 016974 202 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 281 (379)
Q Consensus 202 ~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~ 281 (379)
..+|...|.++.|++ ...++++++|.+|+.||+...+ .+..+.+ +..++++..+|..++|++||.|..|++||.++
T Consensus 256 l~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~-~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~ 331 (423)
T KOG0313|consen 256 LEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGG-LKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRT 331 (423)
T ss_pred ecccccceeeEEEcC--CCceEeecccceEEEEEeeccc-ceeeeec-CcceeEeecccccceeeecCCCCceeecCCCC
Confidence 258999999999986 4578899999999999998764 3444443 56799999999999999999999999999998
Q ss_pred CceeEEEeeccCCCCCCCeEEEEEccCCC-EEEEEEecCcEEEEeCCCce-EEEecccccCCccCceeEEEECCCCCeEE
Q 016974 282 GHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAK-VVLNLGSLQNSHEGRITCLGLSADGSALC 359 (379)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~v~~~~fs~~g~-~l~sg~~dg~i~iwd~~~~~-~~~~~~~~~~~h~~~v~~~~~s~d~~~l~ 359 (379)
+..-....+ -..|...|.++.++|... .|++|+.|+++++||+++.+ .+..+ .+|...|.++.|+ ++..|+
T Consensus 332 ~~gs~v~~s--~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI----~~h~DKvl~vdW~-~~~~Iv 404 (423)
T KOG0313|consen 332 GDGSVVSQS--LIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI----AGHNDKVLSVDWN-EGGLIV 404 (423)
T ss_pred CCCceeEEe--eecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceee----ccCCceEEEEecc-CCceEE
Confidence 643222111 123455899999999776 56789999999999998877 55665 6899999999998 678999
Q ss_pred EeeCCCcEEEEecC
Q 016974 360 TGSWDTNLKIWAFG 373 (379)
Q Consensus 360 s~s~D~~i~vw~~~ 373 (379)
||+.|++|+|+...
T Consensus 405 SGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 405 SGGADNKLRIFKGS 418 (423)
T ss_pred eccCcceEEEeccc
Confidence 99999999999754
No 40
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=8.1e-34 Score=248.80 Aligned_cols=292 Identities=17% Similarity=0.291 Sum_probs=237.7
Q ss_pred EeeccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCce--eeEeecCCcceEEEEECCCCCEEEEeeCC----Cc
Q 016974 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQK--THAIKLPCAWVMTCAFSPTGQSVACGGLD----SV 132 (379)
Q Consensus 59 ~~~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~g~~l~~~~~d----~~ 132 (379)
.+..+.+|..+++-..|+|.|-++|||...|+|||||...... ..+++.-.++|..++|+++++.|+..|.- +.
T Consensus 51 ~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~ 130 (603)
T KOG0318|consen 51 SVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGH 130 (603)
T ss_pred ceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeE
Confidence 3457889999999999999999999999999999999865332 23455567889999999999998887653 34
Q ss_pred EEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEE
Q 016974 133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV 212 (379)
Q Consensus 133 i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~ 212 (379)
+.+||-.+. .-.+.||...|.+|.|-|..+..+++|+.|++|.+|+-..-.-... ...|+.-|.++
T Consensus 131 ~F~~DSG~S---------vGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s-----~r~HskFV~~V 196 (603)
T KOG0318|consen 131 VFLWDSGNS---------VGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSS-----FREHSKFVNCV 196 (603)
T ss_pred EEEecCCCc---------cceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeec-----ccccccceeeE
Confidence 566765432 2347899999999999998888899999999999997532211111 15788999999
Q ss_pred EEeCCCCcEEEEecCCCcEEEEEccCCccceEEEe---cccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEe
Q 016974 213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH---GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY 289 (379)
Q Consensus 213 ~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~---~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~ 289 (379)
.++| ++.+|+|.+.||.|.+||-.+. +.+..+. +|.+.|.+++|+||++.++++|.|.++||||+.+.+.+.++.
T Consensus 197 RysP-DG~~Fat~gsDgki~iyDGktg-e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~ 274 (603)
T KOG0318|consen 197 RYSP-DGSRFATAGSDGKIYIYDGKTG-EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWP 274 (603)
T ss_pred EECC-CCCeEEEecCCccEEEEcCCCc-cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEee
Confidence 9998 6889999999999999998765 4566666 899999999999999999999999999999999998887764
Q ss_pred eccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEE
Q 016974 290 QQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKI 369 (379)
Q Consensus 290 ~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~v 369 (379)
.... -......+-|- ...|++-+.+|.|.+++.........+ .+|...|++++.+||+++|.|||.||.|.-
T Consensus 275 ~~~~--v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i----~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~ 346 (603)
T KOG0318|consen 275 MGST--VEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVI----SGHNKSITALTVSPDGKTIYSGSYDGHINS 346 (603)
T ss_pred cCCc--hhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhhee----cccccceeEEEEcCCCCEEEeeccCceEEE
Confidence 3221 11122333443 567889999999999998887755555 799999999999999999999999999999
Q ss_pred EecCc
Q 016974 370 WAFGG 374 (379)
Q Consensus 370 w~~~~ 374 (379)
|+.+.
T Consensus 347 W~~~~ 351 (603)
T KOG0318|consen 347 WDSGS 351 (603)
T ss_pred EecCC
Confidence 99876
No 41
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.2e-36 Score=258.84 Aligned_cols=245 Identities=23% Similarity=0.436 Sum_probs=211.5
Q ss_pred ccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeec-CCcceEEEEECCCCCEEEEeeCCCcEEEEEcCC
Q 016974 62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKL-PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS 140 (379)
Q Consensus 62 ~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~ 140 (379)
.++.|..+|.++.|++++.+++||+.+|.|++|+..-. .++.+.. |...|.+++|+|+...+++++.|++|+|||...
T Consensus 133 ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn-nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~ 211 (464)
T KOG0284|consen 133 ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM 211 (464)
T ss_pred HhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh-hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccC
Confidence 46789999999999999999999999999999997643 3334444 448899999999999999999999999999875
Q ss_pred CCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCc
Q 016974 141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR 220 (379)
Q Consensus 141 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 220 (379)
+. ..+.+.||.-.|.++.|+|.. ..+++||.|+.|++||.+++.++..+ .+|...|..+.|++ +++
T Consensus 212 ~k-------ee~vL~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDprSg~cl~tl-----h~HKntVl~~~f~~-n~N 277 (464)
T KOG0284|consen 212 PK-------EERVLRGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSGSCLATL-----HGHKNTVLAVKFNP-NGN 277 (464)
T ss_pred Cc-------hhheeccCCCCcceeccCCcc-ceeEEccCCceeEeecCCCcchhhhh-----hhccceEEEEEEcC-CCC
Confidence 43 235678999999999999985 57999999999999999999988776 68999999999997 569
Q ss_pred EEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEcc-CCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCC
Q 016974 221 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299 (379)
Q Consensus 221 ~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp-~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 299 (379)
+|+|+|.|..++++|++.. +.++.+++|+..|+++.|+| ...+|++|+.||.|..|.+...+++... ...+...
T Consensus 278 ~Llt~skD~~~kv~DiR~m-kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i----~~AHd~~ 352 (464)
T KOG0284|consen 278 WLLTGSKDQSCKVFDIRTM-KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEI----PPAHDGE 352 (464)
T ss_pred eeEEccCCceEEEEehhHh-HHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCC----Ccccccc
Confidence 9999999999999999954 66788999999999999999 6778999999999999998754444333 2334567
Q ss_pred eEEEEEccCCCEEEEEEecCcEEEEeC
Q 016974 300 VTSIAFSISGRLLFAGYSNGDCYVWDT 326 (379)
Q Consensus 300 v~~~~fs~~g~~l~sg~~dg~i~iwd~ 326 (379)
|.+++|+|-|.+|++|+.|.++++|.-
T Consensus 353 iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 353 IWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred eeeeeccccceeEeecCCCcceeeecc
Confidence 999999999999999999999999963
No 42
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6e-35 Score=269.65 Aligned_cols=291 Identities=20% Similarity=0.334 Sum_probs=247.4
Q ss_pred ccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCC
Q 016974 62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSP 141 (379)
Q Consensus 62 ~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~ 141 (379)
.|..-+..|-.++|+|...+++++=..|.|++||..=+..++.+..|.++|..++|+|++.++++||+|..|++|+....
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r 83 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR 83 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc
Confidence 34445567889999999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred CCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcE
Q 016974 142 TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRM 221 (379)
Q Consensus 142 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 221 (379)
.+..++.||-+.|..+.|++.- .+++|+|.|.+|+||+..+..++..+ .||.--|.+..|+| ...+
T Consensus 84 -------rclftL~GHlDYVRt~~FHhey-PWIlSASDDQTIrIWNwqsr~~iavl-----tGHnHYVMcAqFhp-tEDl 149 (1202)
T KOG0292|consen 84 -------RCLFTLLGHLDYVRTVFFHHEY-PWILSASDDQTIRIWNWQSRKCIAVL-----TGHNHYVMCAQFHP-TEDL 149 (1202)
T ss_pred -------eehhhhccccceeEEeeccCCC-ceEEEccCCCeEEEEeccCCceEEEE-----ecCceEEEeeccCC-ccce
Confidence 3667889999999999999864 58999999999999999999998887 78999999999998 4568
Q ss_pred EEEecCCCcEEEEEccCCc----------------------------cceEEEecccCCeeEEEEccCCCEEEEeeCCCe
Q 016974 222 FVSGSCDSTARLWDTRVAS----------------------------RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 273 (379)
Q Consensus 222 l~sg~~d~~i~vwd~~~~~----------------------------~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~ 273 (379)
++|+|.|.+||+||+.-.+ ...+.+.||.-.|+-++|+|.-..|+||++|+.
T Consensus 150 IVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRq 229 (1202)
T KOG0292|consen 150 IVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQ 229 (1202)
T ss_pred EEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcce
Confidence 9999999999999974210 123467899999999999999999999999999
Q ss_pred EEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECC
Q 016974 274 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 353 (379)
Q Consensus 274 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 353 (379)
||+|.+...+. +....-.+|..+|+++-|+|...+|++.++|++|++||......+.++ ..-.+.-++++-+|
T Consensus 230 VKlWrmnetKa---WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tf----rrendRFW~laahP 302 (1202)
T KOG0292|consen 230 VKLWRMNETKA---WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTF----RRENDRFWILAAHP 302 (1202)
T ss_pred eeEEEeccccc---eeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeee----eccCCeEEEEEecC
Confidence 99999875432 222223445667999999999999999999999999998776666555 23456789999999
Q ss_pred CCCeEEEeeCCCcEEEEecCc
Q 016974 354 DGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 354 d~~~l~s~s~D~~i~vw~~~~ 374 (379)
..+.+| ++.|+-+-||.+..
T Consensus 303 ~lNLfA-AgHDsGm~VFkleR 322 (1202)
T KOG0292|consen 303 ELNLFA-AGHDSGMIVFKLER 322 (1202)
T ss_pred Ccceee-eecCCceEEEEEcc
Confidence 998776 56777788887763
No 43
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.3e-34 Score=263.33 Aligned_cols=292 Identities=22% Similarity=0.399 Sum_probs=244.9
Q ss_pred eccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCC
Q 016974 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS 140 (379)
Q Consensus 61 ~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~ 140 (379)
-++.||+..|.+++++.+...++||+. +.++||+..+.+++.++.. +.+.+..|-|.+++++.|...|.+.++|+.+
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS 443 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLAS 443 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeeh
Confidence 367899999999999998877777654 5799999999999988764 4789999999999999999999999999976
Q ss_pred CCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCC-----CeeEEEe--cCccccCCccCeEEEE
Q 016974 141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT-----GLRTSVF--GGEFQSGHTADVLSVS 213 (379)
Q Consensus 141 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-----~~~~~~~--~~~~~~~h~~~v~~~~ 213 (379)
.. ...+...|.+++..++..|++ ..+++||.|.+|++||+.- +.+...+ .......-...|.++.
T Consensus 444 ~~-------l~Eti~AHdgaIWsi~~~pD~-~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~ 515 (888)
T KOG0306|consen 444 AS-------LVETIRAHDGAIWSISLSPDN-KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVS 515 (888)
T ss_pred hh-------hhhhhhccccceeeeeecCCC-CceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEE
Confidence 32 334566899999999999986 5699999999999999742 1111111 0011122346799999
Q ss_pred EeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccC
Q 016974 214 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG 293 (379)
Q Consensus 214 ~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~ 293 (379)
++| ++++++.+-.|.++++|-+.+. +-.-.+-||.-||.|+..|||++.++|||.|..|++|-+.=|.+.+.++.
T Consensus 516 ~Sp-dgk~LaVsLLdnTVkVyflDtl-KFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fA--- 590 (888)
T KOG0306|consen 516 VSP-DGKLLAVSLLDNTVKVYFLDTL-KFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFA--- 590 (888)
T ss_pred EcC-CCcEEEEEeccCeEEEEEecce-eeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhc---
Confidence 997 8899999999999999988765 34456789999999999999999999999999999999987877666543
Q ss_pred CCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecC
Q 016974 294 ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 373 (379)
Q Consensus 294 ~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~ 373 (379)
|...|+++.|-|...++++++.|+.|+.||....+.+.++ .+|...|+|++.+|+|.+++|+|.|.+||+|.-+
T Consensus 591 --HdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L----~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 591 --HDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKL----DGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERT 664 (888)
T ss_pred --ccCceeEEEEcccceeEEEecCcceEEeechhhhhhheee----ccchheeeeeEEcCCCCeEEeccCCceeEeeecc
Confidence 3346999999999999999999999999998777777777 7899999999999999999999999999999876
Q ss_pred c
Q 016974 374 G 374 (379)
Q Consensus 374 ~ 374 (379)
.
T Consensus 665 d 665 (888)
T KOG0306|consen 665 D 665 (888)
T ss_pred C
Confidence 5
No 44
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.9e-35 Score=260.17 Aligned_cols=248 Identities=22% Similarity=0.361 Sum_probs=217.3
Q ss_pred EeeccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEc
Q 016974 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNL 138 (379)
Q Consensus 59 ~~~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~ 138 (379)
+.+.|.--.-+|.+..|-+..+++++||.|..|||++..++++++++..|...+.+++.+|.-.+++++|+|-+|++||.
T Consensus 47 mVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~w 126 (794)
T KOG0276|consen 47 MVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDW 126 (794)
T ss_pred eeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeec
Confidence 34455555667888899998999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCC-
Q 016974 139 NSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS- 217 (379)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~- 217 (379)
+. .+.+.+++.||...|++++|.|.+.+.++|++.|++|++|.+.+..+..++ .+|...|.++++.+.
T Consensus 127 e~------~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl-----~gHekGVN~Vdyy~~g 195 (794)
T KOG0276|consen 127 EN------EWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTL-----EGHEKGVNCVDYYTGG 195 (794)
T ss_pred cC------ceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceee-----eccccCcceEEeccCC
Confidence 74 456788999999999999999999999999999999999999988777766 689999999999764
Q ss_pred CCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCC
Q 016974 218 NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEI 297 (379)
Q Consensus 218 ~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~ 297 (379)
+..+++||+.|..|+|||.++. .+++++.||...|..+.|+|.-..++|||.||++|||+..+-+....+.- ..
T Consensus 196 dkpylIsgaDD~tiKvWDyQtk-~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~-----gl 269 (794)
T KOG0276|consen 196 DKPYLISGADDLTIKVWDYQTK-SCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNY-----GL 269 (794)
T ss_pred CcceEEecCCCceEEEeecchH-HHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhc-----CC
Confidence 3459999999999999999865 67889999999999999999999999999999999999877544333221 23
Q ss_pred CCeEEEEEccCCCEEEEEEecCcEEE
Q 016974 298 PHVTSIAFSISGRLLFAGYSNGDCYV 323 (379)
Q Consensus 298 ~~v~~~~fs~~g~~l~sg~~dg~i~i 323 (379)
..+.|++-.+.+..++.|.++|.|.+
T Consensus 270 eRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 270 ERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred ceEEEEeecCCCCeEEEeccCCcEEE
Confidence 45889998888888999998887665
No 45
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=6.4e-34 Score=244.04 Aligned_cols=283 Identities=21% Similarity=0.347 Sum_probs=240.3
Q ss_pred cEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCc
Q 016974 69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNL 148 (379)
Q Consensus 69 ~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~ 148 (379)
.++++...|..+.+++|+.|.++.++|...++.+..+++|...+..+.|+|+...+++++.|..|+||......
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s------ 294 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS------ 294 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc------
Confidence 58888888877889999999999999999999999999999999999999999999999999999999876433
Q ss_pred ceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCC
Q 016974 149 PVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD 228 (379)
Q Consensus 149 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d 228 (379)
.......|..+|+.+..+|.+ .+|++++.|+++.+.|++++..+.....+ ...-.+.+..|+| ++.+|.+|..|
T Consensus 295 -~~~~~~~h~~~V~~ls~h~tg-eYllsAs~d~~w~Fsd~~~g~~lt~vs~~---~s~v~~ts~~fHp-DgLifgtgt~d 368 (506)
T KOG0289|consen 295 -EPTSSRPHEEPVTGLSLHPTG-EYLLSASNDGTWAFSDISSGSQLTVVSDE---TSDVEYTSAAFHP-DGLIFGTGTPD 368 (506)
T ss_pred -CccccccccccceeeeeccCC-cEEEEecCCceEEEEEccCCcEEEEEeec---cccceeEEeeEcC-CceEEeccCCC
Confidence 123355799999999999986 58999999999999999999877655221 2234578899997 88999999999
Q ss_pred CcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccC
Q 016974 229 STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS 308 (379)
Q Consensus 229 ~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~ 308 (379)
+.|++||+.... .+..|.+|+++|..++|+.+|.+||++++|+.|++||+|+.+..+.+.... ..++.++.|++.
T Consensus 369 ~~vkiwdlks~~-~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~----~~~v~s~~fD~S 443 (506)
T KOG0289|consen 369 GVVKIWDLKSQT-NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDE----KKEVNSLSFDQS 443 (506)
T ss_pred ceEEEEEcCCcc-ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccc----cccceeEEEcCC
Confidence 999999998664 677789999999999999999999999999999999999987766654322 235899999999
Q ss_pred CCEEEEEEecCcEEEEeCCC--ceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEec
Q 016974 309 GRLLFAGYSNGDCYVWDTLL--AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 372 (379)
Q Consensus 309 g~~l~sg~~dg~i~iwd~~~--~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~ 372 (379)
|+||++++.|=.|++++..+ ...+..+ ..|.+..+++.|..+.++|+++|.|..++++.+
T Consensus 444 Gt~L~~~g~~l~Vy~~~k~~k~W~~~~~~----~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 444 GTYLGIAGSDLQVYICKKKTKSWTEIKEL----ADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred CCeEEeecceeEEEEEecccccceeeehh----hhcccccceeeecccceEEeeccchhheEEeec
Confidence 99999998887888877433 2333333 568889999999999999999999999999875
No 46
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.5e-34 Score=249.69 Aligned_cols=283 Identities=27% Similarity=0.424 Sum_probs=230.5
Q ss_pred eeccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceee----E---e-----------ecCCcceEEEEECCCC
Q 016974 60 CRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTH----A---I-----------KLPCAWVMTCAFSPTG 121 (379)
Q Consensus 60 ~~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~----~---~-----------~~~~~~v~~~~~s~~g 121 (379)
+..+..|.-+|.+|+++|+++++++++.||+|.-|++.+++... . + +.|...+.+++.+|||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 56788899999999999999999999999999999998887431 1 0 2556678999999999
Q ss_pred CEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCcc
Q 016974 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF 201 (379)
Q Consensus 122 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 201 (379)
+||++|+.|..+.||+.++.. ....+.+|.+.|.+++|-.. ...|++++.|++|++|++.....+..+
T Consensus 215 kylatgg~d~~v~Iw~~~t~e-------hv~~~~ghr~~V~~L~fr~g-t~~lys~s~Drsvkvw~~~~~s~vetl---- 282 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLE-------HVKVFKGHRGAVSSLAFRKG-TSELYSASADRSVKVWSIDQLSYVETL---- 282 (479)
T ss_pred cEEEecCCCceEEEecCcccc-------hhhcccccccceeeeeeecC-ccceeeeecCCceEEEehhHhHHHHHH----
Confidence 999999999999999987533 34568899999999999754 457999999999999998764333222
Q ss_pred ccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCC
Q 016974 202 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 281 (379)
Q Consensus 202 ~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~ 281 (379)
.+|++.|..+.... ..+.+..|+.|+++++|++... ..-.+.+|.+.+.|++|-. ...+++||+||.|.+|++.+
T Consensus 283 -yGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~ee--sqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~K 357 (479)
T KOG0299|consen 283 -YGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPEE--SQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLK 357 (479)
T ss_pred -hCCccceeeechhc-ccceEEeccccceeEEEecccc--ceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecc
Confidence 69999999998874 5667777889999999999644 3445789999999999964 45799999999999999999
Q ss_pred CceeEEEeeccCCCCC-------CCeEEEEEccCCCEEEEEEecCcEEEEeCCCceE-EEecccccCCccCceeEEEECC
Q 016974 282 GHQLQVYYQQHGENEI-------PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV-VLNLGSLQNSHEGRITCLGLSA 353 (379)
Q Consensus 282 ~~~~~~~~~~~~~~~~-------~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~-~~~~~~~~~~h~~~v~~~~~s~ 353 (379)
.+++......|+.... .+|++++..|...++|+|+.+|.|++|.+..+-. +..+... .-.+.|++|+|++
T Consensus 358 Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~l--s~~GfVNsl~f~~ 435 (479)
T KOG0299|consen 358 KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSL--SLVGFVNSLAFSN 435 (479)
T ss_pred cCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeec--ccccEEEEEEEcc
Confidence 9988887766654333 3899999999999999999999999999876622 2222111 2567899999999
Q ss_pred CCCeEEEe
Q 016974 354 DGSALCTG 361 (379)
Q Consensus 354 d~~~l~s~ 361 (379)
+|++|++|
T Consensus 436 sgk~ivag 443 (479)
T KOG0299|consen 436 SGKRIVAG 443 (479)
T ss_pred CCCEEEEe
Confidence 99977765
No 47
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.6e-35 Score=246.61 Aligned_cols=248 Identities=22% Similarity=0.351 Sum_probs=216.9
Q ss_pred EeeccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCC-CceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEE
Q 016974 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT-SQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFN 137 (379)
Q Consensus 59 ~~~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~ 137 (379)
+.+.|+||++.|.+++|+..|++|++||.|=.+++||..+ .++...+.+|...|.+++|-|.|.++++++.|.+|+.|+
T Consensus 142 ~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We 221 (406)
T KOG0295|consen 142 LERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWE 221 (406)
T ss_pred hhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEe
Confidence 3568899999999999999999999999999999999876 566777888989999999999999999999999999999
Q ss_pred cCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCC
Q 016974 138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS 217 (379)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 217 (379)
+++.. ...++.+|...|..++.+.|+ ..+++++.|.++++|-+.++.+...+ ..|.-.|.+++|.|.
T Consensus 222 ~~tg~-------cv~t~~~h~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~k~~l-----R~hEh~vEci~wap~ 288 (406)
T KOG0295|consen 222 CDTGY-------CVKTFPGHSEWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQCKAEL-----REHEHPVECIAWAPE 288 (406)
T ss_pred cccce-------eEEeccCchHhEEEEEecCCe-eEEEecCCCceEEEEEeccchhhhhh-----hccccceEEEEeccc
Confidence 98643 567889999999999988764 68999999999999999988655544 567777777777431
Q ss_pred --------------CCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCc
Q 016974 218 --------------NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH 283 (379)
Q Consensus 218 --------------~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~ 283 (379)
.+.++.+++.|++|++||+.++ .++.++.||...|..++|+|.|+||+|+.+|+++++||+++++
T Consensus 289 ~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg-~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~ 367 (406)
T KOG0295|consen 289 SSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG-MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQ 367 (406)
T ss_pred ccCcchhhccCCCCCccEEEeecccceEEEEeccCC-eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccce
Confidence 2368999999999999999977 5778899999999999999999999999999999999999988
Q ss_pred eeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEe
Q 016974 284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD 325 (379)
Q Consensus 284 ~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd 325 (379)
+...+.. +...|+++.|..+-.|+++|+-|.++++|.
T Consensus 368 cmk~~~a-----h~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 368 CMKTLEA-----HEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred eeeccCC-----CcceeEEEecCCCCceEEeccccceeeeee
Confidence 8766542 234699999999999999999999999996
No 48
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.3e-34 Score=250.30 Aligned_cols=279 Identities=25% Similarity=0.384 Sum_probs=235.2
Q ss_pred ccEEEEEeeCCCCe-EEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCC
Q 016974 68 GKVYSLDWTSERNR-IVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDG 146 (379)
Q Consensus 68 ~~v~~~~~~~~~~~-l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~ 146 (379)
++|.+++|+|...+ +|+.| .-.+.|++..+....+++.-....|.++.|-.||+++|+|...|.++|+|+.+
T Consensus 27 ~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~------ 99 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS------ 99 (487)
T ss_pred CcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc------
Confidence 46999999996654 44433 34699999888777776666667799999999999999999999999999653
Q ss_pred CcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEec
Q 016974 147 NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS 226 (379)
Q Consensus 147 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~ 226 (379)
..+.+.+.+|+.+|..+.|+|.++..|++|+.|+.+++||+.+......+ .+|++.|.+.+++|.+..+++||+
T Consensus 100 -r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l-----~~htDYVR~g~~~~~~~hivvtGs 173 (487)
T KOG0310|consen 100 -RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAEL-----SGHTDYVRCGDISPANDHIVVTGS 173 (487)
T ss_pred -HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEe-----cCCcceeEeeccccCCCeEEEecC
Confidence 12567788999999999999999999999999999999999987643233 789999999999999999999999
Q ss_pred CCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEc
Q 016974 227 CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS 306 (379)
Q Consensus 227 ~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs 306 (379)
.||.||+||++.....+.++ .|..+|..+.|-|.|..||+++. ..+|+||+.+|.+..... .+|...|+|+++.
T Consensus 174 YDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~----~~H~KtVTcL~l~ 247 (487)
T KOG0310|consen 174 YDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSM----FNHNKTVTCLRLA 247 (487)
T ss_pred CCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhh----hcccceEEEEEee
Confidence 99999999999765556666 48899999999999999999875 479999999776543322 2245679999999
Q ss_pred cCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEE
Q 016974 307 ISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 370 (379)
Q Consensus 307 ~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw 370 (379)
.++..|++|+-||.+++||+.+.+.+..+ .-.++|.+++.+||++.++.|-.||.+.+=
T Consensus 248 s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~-----~~~~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 248 SDSTRLLSGSLDRHVKVFDTTNYKVVHSW-----KYPGPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred cCCceEeecccccceEEEEccceEEEEee-----ecccceeeEEecCCCceEEEecccceeeee
Confidence 99999999999999999998888877765 356899999999999999999999988665
No 49
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=3.9e-34 Score=235.85 Aligned_cols=299 Identities=20% Similarity=0.298 Sum_probs=241.6
Q ss_pred eeccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCC------------C------ceeeEeecCCcceEEEEECCCC
Q 016974 60 CRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT------------S------QKTHAIKLPCAWVMTCAFSPTG 121 (379)
Q Consensus 60 ~~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~------------~------~~~~~~~~~~~~v~~~~~s~~g 121 (379)
...+..|..++.+.+|++||.++||||.|..|+|.|++. + -.+.++..|...|..+.|+|..
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 347888999999999999999999999999999999861 0 1234566788899999999999
Q ss_pred CEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCcc
Q 016974 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF 201 (379)
Q Consensus 122 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 201 (379)
..|++++.|++++++|+..+..+ ...........|.++.|+|.+ .+|+.|....++++||+.+-++..... -
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saK-----rA~K~~qd~~~vrsiSfHPsG-efllvgTdHp~~rlYdv~T~Qcfvsan--P 256 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAK-----RAFKVFQDTEPVRSISFHPSG-EFLLVGTDHPTLRLYDVNTYQCFVSAN--P 256 (430)
T ss_pred heEEeccCCCeEEEEecccHHHH-----HHHHHhhccceeeeEeecCCC-ceEEEecCCCceeEEeccceeEeeecC--c
Confidence 99999999999999999753311 111122334579999999986 589999999999999999876543332 3
Q ss_pred ccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEE-ecccC-CeeEEEEccCCCEEEEeeCCCeEEEEEC
Q 016974 202 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF-HGHEG-DVNTVKFFPDGNRFGTGSDDGTCRLFDI 279 (379)
Q Consensus 202 ~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~-~~h~~-~v~~v~~sp~g~~l~s~s~D~~i~iwd~ 279 (379)
...|.+.|+++.+++ .+++.++|+.||.|++||--.. +++.++ .+|.+ .|.+..|..+|+|+++.+.|.++++|.+
T Consensus 257 d~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~-rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi 334 (430)
T KOG0640|consen 257 DDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSN-RCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEI 334 (430)
T ss_pred ccccccceeEEEecC-CccEEEEeccCCcEEeeccccH-HHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeee
Confidence 468999999999996 7789999999999999996544 444433 45654 6999999999999999999999999999
Q ss_pred CCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEe-cCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeE
Q 016974 280 RTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSAL 358 (379)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l 358 (379)
.+++.+..+...........-+...|+....|++.-++ .+.+--||.++......+ ..+|++++.++.-||.+..+
T Consensus 335 ~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~---slgHn~a~R~i~HSP~~p~F 411 (430)
T KOG0640|consen 335 STGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALL---SLGHNGAVRWIVHSPVEPAF 411 (430)
T ss_pred cCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhc---ccCCCCCceEEEeCCCCCce
Confidence 99999998876543333444567889999999888764 457899998776544322 25899999999999999999
Q ss_pred EEeeCCCcEEEEe
Q 016974 359 CTGSWDTNLKIWA 371 (379)
Q Consensus 359 ~s~s~D~~i~vw~ 371 (379)
.++|.|..+|.|.
T Consensus 412 mTcsdD~raRFWy 424 (430)
T KOG0640|consen 412 MTCSDDFRARFWY 424 (430)
T ss_pred eeecccceeeeee
Confidence 9999999999995
No 50
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.2e-34 Score=242.88 Aligned_cols=246 Identities=24% Similarity=0.430 Sum_probs=213.2
Q ss_pred eEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCe
Q 016974 103 HAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT 182 (379)
Q Consensus 103 ~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~ 182 (379)
..+.+|.+||.++++.|.++.+++|+.|++++|||+.++. +..++.||...|..+++++. ..+|.+++.|+.
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~-------LkltltGhi~~vr~vavS~r-HpYlFs~gedk~ 216 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ-------LKLTLTGHIETVRGVAVSKR-HPYLFSAGEDKQ 216 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCe-------EEEeecchhheeeeeeeccc-CceEEEecCCCe
Confidence 4567899999999999999999999999999999998642 45678899999999999986 458999999999
Q ss_pred EEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCC
Q 016974 183 CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG 262 (379)
Q Consensus 183 i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g 262 (379)
|+.||++....+..+ .+|-..|.+++.+|. -+.++||+.|.++|+||+++. ..+..+.||..+|.+|.+.|..
T Consensus 217 VKCwDLe~nkvIR~Y-----hGHlS~V~~L~lhPT-ldvl~t~grDst~RvWDiRtr-~~V~~l~GH~~~V~~V~~~~~d 289 (460)
T KOG0285|consen 217 VKCWDLEYNKVIRHY-----HGHLSGVYCLDLHPT-LDVLVTGGRDSTIRVWDIRTR-ASVHVLSGHTNPVASVMCQPTD 289 (460)
T ss_pred eEEEechhhhhHHHh-----ccccceeEEEecccc-ceeEEecCCcceEEEeeeccc-ceEEEecCCCCcceeEEeecCC
Confidence 999999876554444 689999999999984 468899999999999999965 5788999999999999999977
Q ss_pred CEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCc
Q 016974 263 NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH 342 (379)
Q Consensus 263 ~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h 342 (379)
..+++||.|++|++||++.|+....... +...|.+++.+|....+|+++.| .|+.|++..+....++ .+|
T Consensus 290 pqvit~S~D~tvrlWDl~agkt~~tlt~-----hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nl----sgh 359 (460)
T KOG0285|consen 290 PQVITGSHDSTVRLWDLRAGKTMITLTH-----HKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNL----SGH 359 (460)
T ss_pred CceEEecCCceEEEeeeccCceeEeeec-----ccceeeEEecCCchhhhhccCCc-cceeccCCccchhhcc----ccc
Confidence 7899999999999999999987766533 34469999999999999998887 5999998877766655 789
Q ss_pred cCceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 343 EGRITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 343 ~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
+..|++++.+.|| ++++|+..|.+..||...
T Consensus 360 ~~iintl~~nsD~-v~~~G~dng~~~fwdwks 390 (460)
T KOG0285|consen 360 NAIINTLSVNSDG-VLVSGGDNGSIMFWDWKS 390 (460)
T ss_pred cceeeeeeeccCc-eEEEcCCceEEEEEecCc
Confidence 9999999998765 567899999999999876
No 51
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.7e-34 Score=263.24 Aligned_cols=252 Identities=25% Similarity=0.401 Sum_probs=212.4
Q ss_pred EeeccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEc
Q 016974 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNL 138 (379)
Q Consensus 59 ~~~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~ 138 (379)
++..|.+|.++|..++|+|.+.+++||+.|-+|++|+..+.+++.++.+|...|..+.|++.-..++++|+|.+|+||++
T Consensus 43 li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNw 122 (1202)
T KOG0292|consen 43 LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNW 122 (1202)
T ss_pred HHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEec
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEE------------------Eec--
Q 016974 139 NSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS------------------VFG-- 198 (379)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~------------------~~~-- 198 (379)
.+.. +...+.||...|+|.+|+|.. ..++|+|.|.+|++||+..-.... .++
T Consensus 123 qsr~-------~iavltGHnHYVMcAqFhptE-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~ 194 (1202)
T KOG0292|consen 123 QSRK-------CIAVLTGHNHYVMCAQFHPTE-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQT 194 (1202)
T ss_pred cCCc-------eEEEEecCceEEEeeccCCcc-ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCc
Confidence 8643 667899999999999999976 479999999999999985311100 011
Q ss_pred ----CccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCcc-ceEEEecccCCeeEEEEccCCCEEEEeeCCCe
Q 016974 199 ----GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR-AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 273 (379)
Q Consensus 199 ----~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~-~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~ 273 (379)
.....||.-.|.-++|+|. -.+++||+.|+.|++|.+...+. .+.+..||.+.|.++-|+|..+.++|.|.|++
T Consensus 195 DaVVK~VLEGHDRGVNwaAfhpT-lpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDks 273 (1202)
T KOG0292|consen 195 DAVVKHVLEGHDRGVNWAAFHPT-LPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKS 273 (1202)
T ss_pred CeeeeeeecccccccceEEecCC-cceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCcc
Confidence 0123689999999999984 45899999999999998864321 34567899999999999999999999999999
Q ss_pred EEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEe
Q 016974 274 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD 325 (379)
Q Consensus 274 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd 325 (379)
|+|||+.+...++.+...+ ..-..++-.|..+++|+|.+.| +.+|.
T Consensus 274 irVwDm~kRt~v~tfrren-----dRFW~laahP~lNLfAAgHDsG-m~VFk 319 (1202)
T KOG0292|consen 274 IRVWDMTKRTSVQTFRREN-----DRFWILAAHPELNLFAAGHDSG-MIVFK 319 (1202)
T ss_pred EEEEecccccceeeeeccC-----CeEEEEEecCCcceeeeecCCc-eEEEE
Confidence 9999999888888875533 2367888899999888876665 44443
No 52
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.2e-34 Score=263.43 Aligned_cols=296 Identities=20% Similarity=0.328 Sum_probs=211.9
Q ss_pred eeccc-cccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEE-------------ECC---CCC
Q 016974 60 CRTLQ-GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCA-------------FSP---TGQ 122 (379)
Q Consensus 60 ~~~l~-gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~-------------~s~---~g~ 122 (379)
...+. +|.+.|+++.|++||++|||||.|+.|+||.+...+... .+...-.++- -++ .++
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~---~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~ 335 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMR---VAEGDSSCMYFEYNANSQIEPSTSSEEKISSR 335 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhc---ccccccchhhhhhhhccccCcccccccccccc
Confidence 34566 899999999999999999999999999999876533210 0000000000 000 000
Q ss_pred --EEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCc
Q 016974 123 --SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 200 (379)
Q Consensus 123 --~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 200 (379)
..-.+..... .+.+...+. -.......+.||.+.|..+.|+.+ ++|++++.|+||+||++....++..|
T Consensus 336 ~s~~~~~~~s~~-~~~p~~~f~---f~ekP~~ef~GHt~DILDlSWSKn--~fLLSSSMDKTVRLWh~~~~~CL~~F--- 406 (712)
T KOG0283|consen 336 TSSSRKGSQSPC-VLLPLKAFV---FSEKPFCEFKGHTADILDLSWSKN--NFLLSSSMDKTVRLWHPGRKECLKVF--- 406 (712)
T ss_pred ccccccccCCcc-ccCCCcccc---ccccchhhhhccchhheecccccC--CeeEeccccccEEeecCCCcceeeEE---
Confidence 0111111111 111111000 000123567899999999999874 58999999999999999999998887
Q ss_pred cccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECC
Q 016974 201 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 280 (379)
Q Consensus 201 ~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~ 280 (379)
.|.+-|+|++|+|-+.++|++|+-|+.||||++... +.+ ....-..-|++++|.|||++.+.|+.+|.+++|+..
T Consensus 407 ---~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~-~Vv-~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~ 481 (712)
T KOG0283|consen 407 ---SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDK-KVV-DWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTE 481 (712)
T ss_pred ---ecCCeeEEEEecccCCCcEeecccccceEEeecCcC-eeE-eehhhhhhheeEEeccCCceEEEEEeccEEEEEEcc
Confidence 699999999999999999999999999999998743 333 333344789999999999999999999999999988
Q ss_pred CCceeEEEeec--cCCC-CCCCeEEEEEccCCC-EEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCC
Q 016974 281 TGHQLQVYYQQ--HGEN-EIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS 356 (379)
Q Consensus 281 ~~~~~~~~~~~--~~~~-~~~~v~~~~fs~~g~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~ 356 (379)
..+....+.-. .+.+ ....|+.+.|.|... -|++.+.|..|+|+|......+..+..+.+.+. -....|+.||+
T Consensus 482 ~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~S--Q~~Asfs~Dgk 559 (712)
T KOG0283|consen 482 GLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSS--QISASFSSDGK 559 (712)
T ss_pred CCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCc--ceeeeEccCCC
Confidence 66543322111 1111 122599999987554 477788999999999877777777765544443 24578999999
Q ss_pred eEEEeeCCCcEEEEecCc
Q 016974 357 ALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 357 ~l~s~s~D~~i~vw~~~~ 374 (379)
+|+++|.|..|+||++..
T Consensus 560 ~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 560 HIVSASEDSWVYIWKNDS 577 (712)
T ss_pred EEEEeecCceEEEEeCCC
Confidence 999999999999999755
No 53
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-32 Score=226.02 Aligned_cols=290 Identities=19% Similarity=0.341 Sum_probs=233.7
Q ss_pred ccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeC--CCcEEEEEcC
Q 016974 62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL--DSVCSIFNLN 139 (379)
Q Consensus 62 ~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--d~~i~iw~~~ 139 (379)
.|..-.+.|+++.|+++|..|++++.|.+++|||..++++.+++..+...+..++|......+..++. |.+|+..++.
T Consensus 9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~ 88 (311)
T KOG1446|consen 9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH 88 (311)
T ss_pred ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEee
Confidence 44455678999999999999999999999999999999999999988888999999887777777776 8999999987
Q ss_pred CCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCC
Q 016974 140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 219 (379)
Q Consensus 140 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 219 (379)
... ..+-+.||...|..+..+|-+ ..++|++.|++|++||++...+...+. ...-..+++.| .+
T Consensus 89 dNk-------ylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~-------~~~~pi~AfDp-~G 152 (311)
T KOG1446|consen 89 DNK-------YLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLN-------LSGRPIAAFDP-EG 152 (311)
T ss_pred cCc-------eEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEe-------cCCCcceeECC-CC
Confidence 543 678899999999999999976 579999999999999999766544431 11223445665 67
Q ss_pred cEEEEecCCCcEEEEEccCCc-cceEEEe---cccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCC
Q 016974 220 RMFVSGSCDSTARLWDTRVAS-RAVRTFH---GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN 295 (379)
Q Consensus 220 ~~l~sg~~d~~i~vwd~~~~~-~~~~~~~---~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~ 295 (379)
-+||++.....|++||+|... .+..++. +-....+.+.|||||++++.+...+.+.+.|.-+|.....+......+
T Consensus 153 LifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~ 232 (311)
T KOG1446|consen 153 LIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAG 232 (311)
T ss_pred cEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCC
Confidence 788888877799999998653 3333332 335678999999999999999999999999999998777765543332
Q ss_pred CCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 296 EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 296 ~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
.. + ...+|+|||++|++|+.||+|++|++.+++.+..+.. .+.+++.|+.|+|--..++| .|..+-+|-...
T Consensus 233 ~~-~-~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~---~~~~~~~~~~fnP~~~mf~s--a~s~l~fw~p~~ 304 (311)
T KOG1446|consen 233 NL-P-LSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRG---PNGGPVSCVRFNPRYAMFVS--ASSNLVFWLPDE 304 (311)
T ss_pred Cc-c-eeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecC---CCCCCccccccCCceeeeee--cCceEEEEeccc
Confidence 22 2 5789999999999999999999999999988877632 37889999999997666555 467888886654
No 54
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.7e-32 Score=272.88 Aligned_cols=268 Identities=17% Similarity=0.275 Sum_probs=211.2
Q ss_pred CCcEEEEECCCCceeeEe-----ecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCc-ceeeeecccccce
Q 016974 88 DGRLIVWNALTSQKTHAI-----KLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNL-PVSRMLSGHKGYV 161 (379)
Q Consensus 88 D~~v~iwd~~~~~~~~~~-----~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~-~~~~~~~~h~~~v 161 (379)
+|-+++|+..+......+ ..|...|.+++|+|+|+++++|+.|+.|+||++.......... .....+. +...+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 777888887754443332 3467889999999999999999999999999986421110000 0111222 34578
Q ss_pred EEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCcc
Q 016974 162 SCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR 241 (379)
Q Consensus 162 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~ 241 (379)
.++.|+|.....|++++.|++|++||+.++.....+ .+|...|.+++|++.++.+|++|+.|+.|++||++.. .
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~-----~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~-~ 609 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEM-----KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG-V 609 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEe-----cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC-c
Confidence 899999876678999999999999999988766655 5799999999999878889999999999999999865 4
Q ss_pred ceEEEecccCCeeEEEEc-cCCCEEEEeeCCCeEEEEECCCCce-eEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecC
Q 016974 242 AVRTFHGHEGDVNTVKFF-PDGNRFGTGSDDGTCRLFDIRTGHQ-LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG 319 (379)
Q Consensus 242 ~~~~~~~h~~~v~~v~~s-p~g~~l~s~s~D~~i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg 319 (379)
.+..+..+ ..|.++.|+ ++|.+|++|+.|+.|++||+++.+. +..+. .+...|.++.|. ++.+|++++.|+
T Consensus 610 ~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~-----~h~~~V~~v~f~-~~~~lvs~s~D~ 682 (793)
T PLN00181 610 SIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI-----GHSKTVSYVRFV-DSSTLVSSSTDN 682 (793)
T ss_pred EEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec-----CCCCCEEEEEEe-CCCEEEEEECCC
Confidence 55666644 679999995 5799999999999999999987653 33322 234569999997 788999999999
Q ss_pred cEEEEeCCCc------eEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecC
Q 016974 320 DCYVWDTLLA------KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 373 (379)
Q Consensus 320 ~i~iwd~~~~------~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~ 373 (379)
+|++||+... +.+..+ .+|...+.+++|+|++++||+|+.|++|++|+..
T Consensus 683 ~ikiWd~~~~~~~~~~~~l~~~----~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 683 TLKLWDLSMSISGINETPLHSF----MGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred EEEEEeCCCCccccCCcceEEE----cCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence 9999998642 233333 5789999999999999999999999999999964
No 55
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.4e-33 Score=260.25 Aligned_cols=246 Identities=33% Similarity=0.557 Sum_probs=208.0
Q ss_pred CcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeec
Q 016974 109 CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI 188 (379)
Q Consensus 109 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~ 188 (379)
...+.++.|+|+|+.+++++.|+.+++|+...... ...+.+.+|...|..++|+|++ .++++++.|+++++||+
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-----~~~~~l~~h~~~v~~~~fs~d~-~~l~s~s~D~tiriwd~ 232 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-----NLLRELSGHTRGVSDVAFSPDG-SYLLSGSDDKTLRIWDL 232 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-----hhhccccccccceeeeEECCCC-cEEEEecCCceEEEeec
Confidence 56789999999999999999999999999843221 2345568999999999999986 58999999999999999
Q ss_pred CC-CeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEE
Q 016974 189 TT-GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGT 267 (379)
Q Consensus 189 ~~-~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s 267 (379)
.. +.....+ .+|...|++++|++.. +++++|+.|++|++||++. .++...+.+|.+.|.+++|+++|.+|++
T Consensus 233 ~~~~~~~~~l-----~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~-~~~~~~l~~hs~~is~~~f~~d~~~l~s 305 (456)
T KOG0266|consen 233 KDDGRNLKTL-----KGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRT-GECVRKLKGHSDGISGLAFSPDGNLLVS 305 (456)
T ss_pred cCCCeEEEEe-----cCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccC-CeEEEeeeccCCceEEEEECCCCCEEEE
Confidence 44 4556665 6899999999999865 8999999999999999997 4788999999999999999999999999
Q ss_pred eeCCCeEEEEECCCCce--eEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCc
Q 016974 268 GSDDGTCRLFDIRTGHQ--LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGR 345 (379)
Q Consensus 268 ~s~D~~i~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~ 345 (379)
++.|+.|++||+.++.. +..+.. .++.. +++++.|+|+|+++++++.|+.+++||+..++..... .+|...
T Consensus 306 ~s~d~~i~vwd~~~~~~~~~~~~~~--~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~----~~~~~~ 378 (456)
T KOG0266|consen 306 ASYDGTIRVWDLETGSKLCLKLLSG--AENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTY----TGHSNL 378 (456)
T ss_pred cCCCccEEEEECCCCceeeeecccC--CCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeee----cccCCc
Confidence 99999999999999884 333322 22223 7999999999999999999999999999888777665 445543
Q ss_pred ---eeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 346 ---ITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 346 ---v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
+.+...++.+.++++|+.|+.|++|++..
T Consensus 379 ~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s 410 (456)
T KOG0266|consen 379 VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSS 410 (456)
T ss_pred ceeEecccccCCCCeEEEEeCCceEEEEeCCc
Confidence 34445578999999999999999999875
No 56
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-34 Score=232.16 Aligned_cols=254 Identities=20% Similarity=0.376 Sum_probs=210.0
Q ss_pred cceeEeeccccccccEEEEEeeCCC-CeEEEEcCCCcEEEEECCC-CceeeEeecCCcceEEEEECCC-CCEEEEeeCCC
Q 016974 55 TDLVCCRTLQGHAGKVYSLDWTSER-NRIVSASQDGRLIVWNALT-SQKTHAIKLPCAWVMTCAFSPT-GQSVACGGLDS 131 (379)
Q Consensus 55 ~~~~~~~~l~gH~~~v~~~~~~~~~-~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~d~ 131 (379)
..+..+..|. -++.+..++|++.. +.+++++-||+++|||+.. ..+++.++.|...|.++.|++. ++.++++|.|+
T Consensus 49 ~gi~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~ 127 (311)
T KOG0277|consen 49 KGIQECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDG 127 (311)
T ss_pred CCeEEEEeee-cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCC
Confidence 3344444443 34669999999854 5789999999999999643 3467778899999999999985 56788889999
Q ss_pred cEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEE
Q 016974 132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLS 211 (379)
Q Consensus 132 ~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~ 211 (379)
+|++|+.+-+. -..++.||...|+...|+|...+.++++|.|+++++||++..-....+ ..|...+.+
T Consensus 128 TiKLW~~~r~~-------Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i-----~ah~~Eil~ 195 (311)
T KOG0277|consen 128 TIKLWDPNRPN-------SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSI-----EAHNSEILC 195 (311)
T ss_pred ceEeecCCCCc-------ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEE-----EeccceeEe
Confidence 99999976432 346789999999999999998899999999999999999865333334 578899999
Q ss_pred EEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccC-CCEEEEeeCCCeEEEEECCCCceeEEEee
Q 016974 212 VSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD-GNRFGTGSDDGTCRLFDIRTGHQLQVYYQ 290 (379)
Q Consensus 212 ~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~-g~~l~s~s~D~~i~iwd~~~~~~~~~~~~ 290 (379)
+.|+..+.++++||+.|+.||.||+++.+.++..+.+|.-+|..|+|||- ...|+|++.|-+++|||...+........
T Consensus 196 cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~ 275 (311)
T KOG0277|consen 196 CDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVD 275 (311)
T ss_pred ecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhh
Confidence 99999999999999999999999999998999999999999999999994 56899999999999999886544332222
Q ss_pred ccCCCCCCCeEEEEEcc-CCCEEEEEEecCcEEEEe
Q 016974 291 QHGENEIPHVTSIAFSI-SGRLLFAGYSNGDCYVWD 325 (379)
Q Consensus 291 ~~~~~~~~~v~~~~fs~-~g~~l~sg~~dg~i~iwd 325 (379)
. +.+.+..+.||+ ++.++|+.+-|+.++||+
T Consensus 276 ~----HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 276 H----HTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred c----cceEEeccccccccCceeeecccccceeeec
Confidence 2 344688888887 456899999999999998
No 57
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2e-33 Score=230.70 Aligned_cols=252 Identities=25% Similarity=0.387 Sum_probs=208.3
Q ss_pred EeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeE
Q 016974 104 AIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183 (379)
Q Consensus 104 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i 183 (379)
.+.+|.+.|..+.|+|+|.++++||.|..|.+|+.....+ -...+++|+++|+.+.|.+++ ..+++++.|++|
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce------N~~~lkgHsgAVM~l~~~~d~-s~i~S~gtDk~v 114 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE------NFWVLKGHSGAVMELHGMRDG-SHILSCGTDKTV 114 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc------ceeeeccccceeEeeeeccCC-CEEEEecCCceE
Confidence 4567889999999999999999999999999999764322 223567999999999999975 689999999999
Q ss_pred EEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCC
Q 016974 184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN 263 (379)
Q Consensus 184 ~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~ 263 (379)
+.||+++|.+...+ .+|..-|.++.....+..++.||+.|+++++||+|.. ..++.+. ..-.++++.|..++.
T Consensus 115 ~~wD~~tG~~~rk~-----k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k-~~~~t~~-~kyqltAv~f~d~s~ 187 (338)
T KOG0265|consen 115 RGWDAETGKRIRKH-----KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK-EAIKTFE-NKYQLTAVGFKDTSD 187 (338)
T ss_pred EEEecccceeeehh-----ccccceeeecCccccCCeEEEecCCCceEEEEeeccc-chhhccc-cceeEEEEEeccccc
Confidence 99999999888766 6888889999877777889999999999999999954 4555543 245689999999999
Q ss_pred EEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCc----eEEEeccccc
Q 016974 264 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA----KVVLNLGSLQ 339 (379)
Q Consensus 264 ~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~----~~~~~~~~~~ 339 (379)
.+.+|+-|+.|++||++.++.+..... +..+|+.+..+|+|.++.+-+-|.++++||+.-. +.+.......
T Consensus 188 qv~sggIdn~ikvWd~r~~d~~~~lsG-----h~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~ 262 (338)
T KOG0265|consen 188 QVISGGIDNDIKVWDLRKNDGLYTLSG-----HADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHI 262 (338)
T ss_pred ceeeccccCceeeeccccCcceEEeec-----ccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecch
Confidence 999999999999999999887766533 4567999999999999999999999999997432 2233332222
Q ss_pred CCccCceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 340 NSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 340 ~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
.........++|+|++.++..||.|+.+++|+...
T Consensus 263 hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 263 HNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTS 297 (338)
T ss_pred hhhhhhcceeeccCCCCccccccccceEEEeeccc
Confidence 22233457788999999999999999999999765
No 58
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=1.6e-33 Score=246.44 Aligned_cols=304 Identities=18% Similarity=0.267 Sum_probs=232.7
Q ss_pred EeeccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCc----eeeEe-ecCCcceEEEEECCCCCEEEEeeCCCcE
Q 016974 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ----KTHAI-KLPCAWVMTCAFSPTGQSVACGGLDSVC 133 (379)
Q Consensus 59 ~~~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~----~~~~~-~~~~~~v~~~~~s~~g~~l~~~~~d~~i 133 (379)
+...|.+|+..|.++++.|.|-.|+|||.|-+|++||...-. ....+ ...+..+.++.|++.|..|++.+...++
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA 238 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence 455789999999999999999999999999999999975321 11111 1234568999999999999999999999
Q ss_pred EEEEcCCCCC---CCCCc--ceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCe-eEEEecCccccCCcc
Q 016974 134 SIFNLNSPTD---KDGNL--PVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-RTSVFGGEFQSGHTA 207 (379)
Q Consensus 134 ~iw~~~~~~~---~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~~h~~ 207 (379)
+|+|-+.... ..|.. .-...-.||...++|..|+|.+...+++++.|+++++||+.... ...++.-....+..-
T Consensus 239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv 318 (641)
T KOG0772|consen 239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV 318 (641)
T ss_pred eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence 9999764320 01111 11223468999999999999998899999999999999997542 223332222234455
Q ss_pred CeEEEEEeCCCCcEEEEecCCCcEEEEEccCCc--cceEEEecccC--CeeEEEEccCCCEEEEeeCCCeEEEEECCCCc
Q 016974 208 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS--RAVRTFHGHEG--DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH 283 (379)
Q Consensus 208 ~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~--~~~~~~~~h~~--~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~ 283 (379)
.+.+++|++ +++++|+|+.||.|.+|+.+... .....-.+|.. .|+||.||+||++|+|=+.|+++++||++..+
T Consensus 319 ~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k 397 (641)
T KOG0772|consen 319 PVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK 397 (641)
T ss_pred CceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence 688899997 77889999999999999975321 23445567877 89999999999999999999999999999755
Q ss_pred ee-EEEeeccCCCCCCCeEEEEEccCCCEEEEEEe------cCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCC
Q 016974 284 QL-QVYYQQHGENEIPHVTSIAFSISGRLLFAGYS------NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS 356 (379)
Q Consensus 284 ~~-~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~------dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~ 356 (379)
.. .... +-....+-+.++|||+.++|++|.+ .|++.+||..+...+..+. .....|..+.|+|-=+
T Consensus 398 kpL~~~t---gL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~----i~~aSvv~~~WhpkLN 470 (641)
T KOG0772|consen 398 KPLNVRT---GLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKID----ISTASVVRCLWHPKLN 470 (641)
T ss_pred cchhhhc---CCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEec----CCCceEEEEeecchhh
Confidence 32 2211 1112234578999999999999863 4689999988877776663 2356788889999988
Q ss_pred eEEEeeCCCcEEEE
Q 016974 357 ALCTGSWDTNLKIW 370 (379)
Q Consensus 357 ~l~s~s~D~~i~vw 370 (379)
.|..|+.||+++||
T Consensus 471 Qi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 471 QIFAGSGDGTAHVY 484 (641)
T ss_pred heeeecCCCceEEE
Confidence 89999999999987
No 59
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-33 Score=225.52 Aligned_cols=281 Identities=22% Similarity=0.336 Sum_probs=223.8
Q ss_pred EEEEeeC--CCCeE-EEE-----cCCCcEEEEECCCCceeeEee--cCCcceEEEEECCCC-CEEEEeeCCCcEEEEEcC
Q 016974 71 YSLDWTS--ERNRI-VSA-----SQDGRLIVWNALTSQKTHAIK--LPCAWVMTCAFSPTG-QSVACGGLDSVCSIFNLN 139 (379)
Q Consensus 71 ~~~~~~~--~~~~l-~s~-----s~D~~v~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~g-~~l~~~~~d~~i~iw~~~ 139 (379)
+++.||| ++++. |++ .-.|++.|-+...++.+.... .....+..++|+++. ..+++++.||.++|||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 5778888 33332 222 246788998886544443322 234568889999976 578889999999999976
Q ss_pred CCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCC
Q 016974 140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 219 (379)
Q Consensus 140 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 219 (379)
.+.. .++.++-|..+|.++.|.+.....++++|.|++|++|+...+..+.++ .+|..-|....|+|..+
T Consensus 92 ~~s~------Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf-----~gh~~~Iy~a~~sp~~~ 160 (311)
T KOG0277|consen 92 MPSK------PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTF-----NGHNSCIYQAAFSPHIP 160 (311)
T ss_pred CCCc------chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEee-----cCCccEEEEEecCCCCC
Confidence 4331 345678899999999999988788999999999999999877777766 68999999999999999
Q ss_pred cEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEcc-CCCEEEEeeCCCeEEEEECCCCcee-EEEeeccCCCCC
Q 016974 220 RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQL-QVYYQQHGENEI 297 (379)
Q Consensus 220 ~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp-~g~~l~s~s~D~~i~iwd~~~~~~~-~~~~~~~~~~~~ 297 (379)
++|+++|.|+.+++||++...+... +..|...|.++.|+. +.+.+++|+.|+.|+.||+++-+.. ..+ ..+.
T Consensus 161 nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL-----~gh~ 234 (311)
T KOG0277|consen 161 NLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFEL-----NGHG 234 (311)
T ss_pred CeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceee-----cCCc
Confidence 9999999999999999998766554 788999999999997 6788999999999999999976532 222 2234
Q ss_pred CCeEEEEEccCCC-EEEEEEecCcEEEEeCCCceE-EEecccccCCccCceeEEEECC-CCCeEEEeeCCCcEEEEec
Q 016974 298 PHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKV-VLNLGSLQNSHEGRITCLGLSA-DGSALCTGSWDTNLKIWAF 372 (379)
Q Consensus 298 ~~v~~~~fs~~g~-~l~sg~~dg~i~iwd~~~~~~-~~~~~~~~~~h~~~v~~~~~s~-d~~~l~s~s~D~~i~vw~~ 372 (379)
-.|..++|||... .||+++.|-+++|||...+.. +.+. ..|++.|..+.||+ ++.++|+.++|..++||+.
T Consensus 235 ~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~----~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 235 LAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETV----DHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred eEEEEEecCcchhhHhhhccccceEEecccccchhhhhhh----hccceEEeccccccccCceeeecccccceeeecc
Confidence 5699999999754 889999999999999764432 2222 57999999999997 6789999999999999984
No 60
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.2e-34 Score=238.69 Aligned_cols=285 Identities=23% Similarity=0.395 Sum_probs=239.3
Q ss_pred cccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEee--------cCCcceEEEEECCCCCEEEEeeCCCcEEEE
Q 016974 65 GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK--------LPCAWVMTCAFSPTGQSVACGGLDSVCSIF 136 (379)
Q Consensus 65 gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~--------~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw 136 (379)
|....+.|..|+|||++|+|||.||.|-+||..+|+..+.++ -....|.++.|+.|...+|+|+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 344568899999999999999999999999999988665443 245789999999999999999999999999
Q ss_pred EcCCCCCCCCCcceeeee-cccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEe
Q 016974 137 NLNSPTDKDGNLPVSRML-SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS 215 (379)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 215 (379)
.+.++. +.+.+ ..|+..|+|+.|+.++ ..+++++.|.++++.-+.+|.++..+ .+|+..|+...|.
T Consensus 291 ri~tG~-------ClRrFdrAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK~LKEf-----rGHsSyvn~a~ft 357 (508)
T KOG0275|consen 291 RIETGQ-------CLRRFDRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGKCLKEF-----RGHSSYVNEATFT 357 (508)
T ss_pred EEecch-------HHHHhhhhhccCeeEEEEccCc-chhhcccccceEEEeccccchhHHHh-----cCccccccceEEc
Confidence 987643 33333 4899999999999876 56999999999999999999887766 7899999999888
Q ss_pred CCCCcEEEEecCCCcEEEEEccCCccceEEEe--cccCCeeEEEEcc-CCCEEEEeeCCCeEEEEECCCCceeEEEeecc
Q 016974 216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFH--GHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 292 (379)
Q Consensus 216 ~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~--~h~~~v~~v~~sp-~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~ 292 (379)
+ ++..+++++.||+|++|+.++. .++.+++ +..-+|+++-.-| +...++.+-..+++.|-++. |+.+..+..
T Consensus 358 ~-dG~~iisaSsDgtvkvW~~Ktt-eC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsS-- 432 (508)
T KOG0275|consen 358 D-DGHHIISASSDGTVKVWHGKTT-ECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSS-- 432 (508)
T ss_pred C-CCCeEEEecCCccEEEecCcch-hhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeecc--
Confidence 5 7889999999999999998865 3444444 3455789988888 45678888889999999986 566666643
Q ss_pred CCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEe
Q 016974 293 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA 371 (379)
Q Consensus 293 ~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~ 371 (379)
+..+.+...+++.||.|.++.+.++|+.++.|.+.+++...++ ..|+..|..++-+|..+.||+-|.||.+++|.
T Consensus 433 GkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl----~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 433 GKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTL----PVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeee----ecccccccccccCcccchhhhhcccchhhhcC
Confidence 2334455667789999999999999999999999999888777 67888999999999999999999999999996
No 61
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.8e-32 Score=249.51 Aligned_cols=204 Identities=25% Similarity=0.382 Sum_probs=164.5
Q ss_pred ecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEE
Q 016974 154 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARL 233 (379)
Q Consensus 154 ~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~v 233 (379)
+.||+..|..++++.+. .++..+..+.+++|+..+..++..++. ..+.+..|.| +.+++++|...|.+.+
T Consensus 369 ~~GHR~dVRsl~vS~d~--~~~~Sga~~SikiWn~~t~kciRTi~~-------~y~l~~~Fvp-gd~~Iv~G~k~Gel~v 438 (888)
T KOG0306|consen 369 IGGHRSDVRSLCVSSDS--ILLASGAGESIKIWNRDTLKCIRTITC-------GYILASKFVP-GDRYIVLGTKNGELQV 438 (888)
T ss_pred eccchhheeEEEeecCc--eeeeecCCCcEEEEEccCcceeEEecc-------ccEEEEEecC-CCceEEEeccCCceEE
Confidence 34788888888888653 455555678999999999988887743 3567777876 6678999999999999
Q ss_pred EEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCC-----CceeEEEeeccC--CCCCCCeEEEEEc
Q 016974 234 WDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT-----GHQLQVYYQQHG--ENEIPHVTSIAFS 306 (379)
Q Consensus 234 wd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~-----~~~~~~~~~~~~--~~~~~~v~~~~fs 306 (379)
+|+... ..+...++|.++|++++.+||+..+++||.|.+|++||..- +.+.+.+.-.|. -.-...|.|+++|
T Consensus 439 fdlaS~-~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~S 517 (888)
T KOG0306|consen 439 FDLASA-SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVS 517 (888)
T ss_pred EEeehh-hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEc
Confidence 999754 45667789999999999999999999999999999999631 111111111110 0012358999999
Q ss_pred cCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEec
Q 016974 307 ISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 372 (379)
Q Consensus 307 ~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~ 372 (379)
|||++||+|--|.+++||=+.+.+....+ -+|.-||.|+.+|||++.++|||.|++|+||-+
T Consensus 518 pdgk~LaVsLLdnTVkVyflDtlKFflsL----YGHkLPV~smDIS~DSklivTgSADKnVKiWGL 579 (888)
T KOG0306|consen 518 PDGKLLAVSLLDNTVKVYFLDTLKFFLSL----YGHKLPVLSMDISPDSKLIVTGSADKNVKIWGL 579 (888)
T ss_pred CCCcEEEEEeccCeEEEEEecceeeeeee----cccccceeEEeccCCcCeEEeccCCCceEEecc
Confidence 99999999999999999988888887777 799999999999999999999999999999954
No 62
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.8e-33 Score=219.35 Aligned_cols=247 Identities=24% Similarity=0.378 Sum_probs=209.2
Q ss_pred eeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCC
Q 016974 101 KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180 (379)
Q Consensus 101 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 180 (379)
..+.+..+.+.|.++.|+-+|+|.+++|.|+++++|+.-.. .+.+++.||...|..++.+.++ ..+++|+.|
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg-------~liktYsghG~EVlD~~~s~Dn-skf~s~GgD 80 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG-------ALIKTYSGHGHEVLDAALSSDN-SKFASCGGD 80 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccc-------ceeeeecCCCceeeeccccccc-cccccCCCC
Confidence 44566777889999999999999999999999999986532 3678899999999999988875 569999999
Q ss_pred CeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCc-cceEEEecccCCeeEEEEc
Q 016974 181 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFF 259 (379)
Q Consensus 181 ~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~-~~~~~~~~h~~~v~~v~~s 259 (379)
+.+.+||+.+|.....+ .+|.+.|..+.|+. ....+++|+.|..+++||.+... ++++.+......|.++..+
T Consensus 81 k~v~vwDV~TGkv~Rr~-----rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~ 154 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRF-----RGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA 154 (307)
T ss_pred ceEEEEEcccCeeeeec-----ccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec
Confidence 99999999999887776 78999999999996 66789999999999999998543 4677777777889888874
Q ss_pred cCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEeccccc
Q 016974 260 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ 339 (379)
Q Consensus 260 p~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~ 339 (379)
+..|++||.||+++.||++.|....-+. ..+|++++|+++|++.++++-|+++++-|..+++.....
T Consensus 155 --~heIvaGS~DGtvRtydiR~G~l~sDy~-------g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sY---- 221 (307)
T KOG0316|consen 155 --EHEIVAGSVDGTVRTYDIRKGTLSSDYF-------GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSY---- 221 (307)
T ss_pred --ccEEEeeccCCcEEEEEeecceeehhhc-------CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHh----
Confidence 5789999999999999999987544332 236999999999999999999999999999999877666
Q ss_pred CCccCc--eeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 340 NSHEGR--ITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 340 ~~h~~~--v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
++|... -...+++.....+++||+||.|++|++-.
T Consensus 222 kGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd 258 (307)
T KOG0316|consen 222 KGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVD 258 (307)
T ss_pred cccccceeeeeeeecccceeEEeccCCceEEEEEecc
Confidence 455543 23456777789999999999999999754
No 63
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=2.8e-32 Score=254.48 Aligned_cols=279 Identities=25% Similarity=0.446 Sum_probs=236.9
Q ss_pred cccc-ccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeE-eecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcC
Q 016974 62 TLQG-HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHA-IKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLN 139 (379)
Q Consensus 62 ~l~g-H~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~ 139 (379)
.+.+ |...+.+..|. .+.+++++.|+++++||..++..+.. +.+|.+.|.+++|..-+.++++|+.|.++++||..
T Consensus 202 ~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~ 279 (537)
T KOG0274|consen 202 VLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCS 279 (537)
T ss_pred eecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecC
Confidence 4444 56678888887 55899999999999999999998888 99999999999999888999999999999999976
Q ss_pred CCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCC
Q 016974 140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 219 (379)
Q Consensus 140 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 219 (379)
++. +..++.||...|.++...+ ..+++|+.|.+|++|++.++..+..+ .+|...|.++..+ +
T Consensus 280 sg~-------C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~-----~~h~~~V~~v~~~---~ 341 (537)
T KOG0274|consen 280 TGE-------CTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLL-----RGHTGPVNCVQLD---E 341 (537)
T ss_pred CCc-------EEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEe-----ccccccEEEEEec---C
Confidence 543 6788999999999887654 46889999999999999999988887 4699999999886 4
Q ss_pred cEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCC-ceeEEEeeccCCCCCC
Q 016974 220 RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG-HQLQVYYQQHGENEIP 298 (379)
Q Consensus 220 ~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~-~~~~~~~~~~~~~~~~ 298 (379)
.++++|+.|+.|++||+... +.+..+.+|..+|.++.+.+. .++++|+.|++|++||+++. +.+..+.. +..
T Consensus 342 ~~lvsgs~d~~v~VW~~~~~-~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~-----h~~ 414 (537)
T KOG0274|consen 342 PLLVSGSYDGTVKVWDPRTG-KCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQG-----HTS 414 (537)
T ss_pred CEEEEEecCceEEEEEhhhc-eeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcC-----Ccc
Confidence 68999999999999999854 788999999999999988665 89999999999999999998 66655532 223
Q ss_pred CeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 299 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 299 ~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
.+..+. ..+++|++++.||+|++||..+++...++.+. |.+.|.++++. ...+++++.|+++++|++..
T Consensus 415 ~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~---~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 415 LVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGR---HVGGVSALALG--KEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred cccccc--cccceeEeccccccEEEeecccCceeeeeccC---CcccEEEeecC--cceEEEEecCCeeEEEeccc
Confidence 344444 46789999999999999999999888887432 66889988876 46788899999999999866
No 64
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-32 Score=245.26 Aligned_cols=275 Identities=25% Similarity=0.419 Sum_probs=228.4
Q ss_pred EEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCccee
Q 016974 72 SLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVS 151 (379)
Q Consensus 72 ~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~ 151 (379)
=++|+. .+.||.| ....|++|+..++........+...|.++.|+++|.+|+.|-.+|.+.|||..... ..
T Consensus 182 lldWss-~n~laVa-lg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k-------~~ 252 (484)
T KOG0305|consen 182 LLDWSS-ANVLAVA-LGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQK-------KT 252 (484)
T ss_pred Hhhccc-CCeEEEE-ecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcc-------cc
Confidence 367773 4566654 45579999999888666555557889999999999999999999999999986532 23
Q ss_pred eeecc-cccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCc
Q 016974 152 RMLSG-HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST 230 (379)
Q Consensus 152 ~~~~~-h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~ 230 (379)
+.+.+ |...|.+++|.. ..+.+|+.|+.|..+|++....... ...+|...|..+.|++ +++++|+|+.|+.
T Consensus 253 ~~~~~~h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~~~~~----~~~~H~qeVCgLkws~-d~~~lASGgnDN~ 324 (484)
T KOG0305|consen 253 RTLRGSHASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQHVVS----TLQGHRQEVCGLKWSP-DGNQLASGGNDNV 324 (484)
T ss_pred ccccCCcCceeEEEeccC---ceEEEecCCCcEEEEEEecchhhhh----hhhcccceeeeeEECC-CCCeeccCCCccc
Confidence 45566 999999999973 5799999999999999987644322 1368999999999997 7889999999999
Q ss_pred EEEEEccCCccceEEEecccCCeeEEEEcc-CCCEEEEee--CCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEcc
Q 016974 231 ARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGS--DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI 307 (379)
Q Consensus 231 i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp-~g~~l~s~s--~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~ 307 (379)
+.|||.... .+...+..|.++|.+++|+| ....||+|+ .|++|++||+.++..+.... ....|..+.|++
T Consensus 325 ~~Iwd~~~~-~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd------tgsQVcsL~Wsk 397 (484)
T KOG0305|consen 325 VFIWDGLSP-EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD------TGSQVCSLIWSK 397 (484)
T ss_pred eEeccCCCc-cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc------cCCceeeEEEcC
Confidence 999999544 56777889999999999999 667889885 79999999999988775542 234699999999
Q ss_pred CCCEEEE--EEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 308 SGRLLFA--GYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 308 ~g~~l~s--g~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
..+-|++ |..+..|.||+..+.+.+..+ .+|...|..++++|||..+++|+.|.|+++|.+..
T Consensus 398 ~~kEi~sthG~s~n~i~lw~~ps~~~~~~l----~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 398 KYKELLSTHGYSENQITLWKYPSMKLVAEL----LGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred CCCEEEEecCCCCCcEEEEeccccceeeee----cCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 9876665 457789999999887777666 78999999999999999999999999999999766
No 65
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=7.9e-32 Score=217.23 Aligned_cols=286 Identities=20% Similarity=0.256 Sum_probs=227.5
Q ss_pred eccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceee--EeecCCcceEEEEECCC-CCEEEEeeCCCcEEEEE
Q 016974 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTH--AIKLPCAWVMTCAFSPT-GQSVACGGLDSVCSIFN 137 (379)
Q Consensus 61 ~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~--~~~~~~~~v~~~~~s~~-g~~l~~~~~d~~i~iw~ 137 (379)
+.+++|..+|.+|+|+.+|..|++|+.|+++++|++...+... ..++|...|-.++|+|. ...+++++.|++|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 6788999999999999999999999999999999998765443 34677778888888774 57999999999999999
Q ss_pred cCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCC
Q 016974 138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS 217 (379)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 217 (379)
++... ++..+.. ++.-.-+.|+|++ ++++.++.|..|.+.|.++-...... .....+..+.|+.
T Consensus 94 ~r~~k------~~~~i~~--~~eni~i~wsp~g-~~~~~~~kdD~it~id~r~~~~~~~~------~~~~e~ne~~w~~- 157 (313)
T KOG1407|consen 94 IRSGK------CTARIET--KGENINITWSPDG-EYIAVGNKDDRITFIDARTYKIVNEE------QFKFEVNEISWNN- 157 (313)
T ss_pred eccCc------EEEEeec--cCcceEEEEcCCC-CEEEEecCcccEEEEEecccceeehh------cccceeeeeeecC-
Confidence 98643 1222211 1222346799986 67999999999999999876544332 2234567777874
Q ss_pred CCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCC
Q 016974 218 NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEI 297 (379)
Q Consensus 218 ~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~ 297 (379)
.+++|+...-.|.|.|-..... +++..+++|+....|+.|+|+|+|||+|+.|-.+.+||+...-+...+.. ..
T Consensus 158 ~nd~Fflt~GlG~v~ILsypsL-kpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isR-----ld 231 (313)
T KOG1407|consen 158 SNDLFFLTNGLGCVEILSYPSL-KPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISR-----LD 231 (313)
T ss_pred CCCEEEEecCCceEEEEecccc-ccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeecc-----cc
Confidence 4556666666789999887744 67889999999999999999999999999999999999987555444433 23
Q ss_pred CCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCC---------CcEE
Q 016974 298 PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD---------TNLK 368 (379)
Q Consensus 298 ~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D---------~~i~ 368 (379)
-+|..++||.+|+|||+|++|-.|-|=++.+|..+..+ .|.++-+.++|+|....||-+..| |+||
T Consensus 232 wpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI-----~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vK 306 (313)
T KOG1407|consen 232 WPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEI-----PCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVK 306 (313)
T ss_pred CceEEEEeccCcceeeccCccceEEeEecccCCeEEEe-----eccCCceeEEecCCCceeeEEecCCCCccccccceeE
Confidence 46999999999999999999999999999999887765 478899999999999999977665 5788
Q ss_pred EEecC
Q 016974 369 IWAFG 373 (379)
Q Consensus 369 vw~~~ 373 (379)
+|-+.
T Consensus 307 iFG~~ 311 (313)
T KOG1407|consen 307 IFGLS 311 (313)
T ss_pred EecCC
Confidence 87653
No 66
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.8e-31 Score=213.79 Aligned_cols=246 Identities=21% Similarity=0.329 Sum_probs=200.5
Q ss_pred eeEeecCCcceEEEEECCC-CCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeee-cccccceEEEEEecCCCceEEEeeC
Q 016974 102 THAIKLPCAWVMTCAFSPT-GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML-SGHKGYVSCCQYVPDEDTHLITSSG 179 (379)
Q Consensus 102 ~~~~~~~~~~v~~~~~s~~-g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~ 179 (379)
.+.+.+|.+.+..++|+|- |..||++|.|+.|+||+...+. ...+...+ .+|+..|++++|+|.+ ++|++||.
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~----s~~ck~vld~~hkrsVRsvAwsp~g-~~La~aSF 81 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD----SWTCKTVLDDGHKRSVRSVAWSPHG-RYLASASF 81 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC----cEEEEEeccccchheeeeeeecCCC-cEEEEeec
Confidence 4566788888999999998 8999999999999999987421 12232222 3799999999999986 59999999
Q ss_pred CCeEEEeecCCC--eeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCC--ccceEEEecccCCeeE
Q 016974 180 DQTCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA--SRAVRTFHGHEGDVNT 255 (379)
Q Consensus 180 d~~i~~wd~~~~--~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~--~~~~~~~~~h~~~v~~ 255 (379)
|.++.||.-..+ .++..+ .+|...|.+++|++ ++++||+++.|+.|-||.+... -.....+++|...|..
T Consensus 82 D~t~~Iw~k~~~efecv~~l-----EGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~ 155 (312)
T KOG0645|consen 82 DATVVIWKKEDGEFECVATL-----EGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKH 155 (312)
T ss_pred cceEEEeecCCCceeEEeee-----eccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccE
Confidence 999999986654 344444 68999999999997 6789999999999999988732 2466788999999999
Q ss_pred EEEccCCCEEEEeeCCCeEEEEECCCCc---eeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEE
Q 016974 256 VKFFPDGNRFGTGSDDGTCRLFDIRTGH---QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV 332 (379)
Q Consensus 256 v~~sp~g~~l~s~s~D~~i~iwd~~~~~---~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~ 332 (379)
+.|+|...+|+|+|.|++||+|.-..+. ..+.+.. +...|.+++|+|.|..|++++.|++++||-..+
T Consensus 156 V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g-----~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~---- 226 (312)
T KOG0645|consen 156 VIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDG-----HENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT---- 226 (312)
T ss_pred EEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecC-----ccceEEEEEecCCCceEEEecCCcceEeeeecc----
Confidence 9999999999999999999999866322 2333321 223699999999999999999999999997431
Q ss_pred EecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecC
Q 016974 333 LNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 373 (379)
Q Consensus 333 ~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~ 373 (379)
. ...-|+.+++.++|. ...|||++.|+.|+||.-.
T Consensus 227 -~---~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s 261 (312)
T KOG0645|consen 227 -D---LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKES 261 (312)
T ss_pred -C---cchhcccceEeeeec--ccceEeccCCCEEEEEEec
Confidence 1 124588899999998 5689999999999999744
No 67
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.6e-30 Score=205.81 Aligned_cols=301 Identities=22% Similarity=0.326 Sum_probs=230.0
Q ss_pred eeEeeccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCC----------Ccee-----eEeecCCcceEEEEECCCC
Q 016974 57 LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT----------SQKT-----HAIKLPCAWVMTCAFSPTG 121 (379)
Q Consensus 57 ~~~~~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~----------~~~~-----~~~~~~~~~v~~~~~s~~g 121 (379)
.+++.+|. -...|.+++|+|.|.+.+.||..++.||-.... .+.. +.-+.|.+.+.+.+|+|.|
T Consensus 23 f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~g 101 (350)
T KOG0641|consen 23 FEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCG 101 (350)
T ss_pred eEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCcc
Confidence 34555554 456799999999999999999999999874321 1111 1224577899999999999
Q ss_pred CEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecC---CCceEEEe-eCCCeEEEeecCCCeeEEEe
Q 016974 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD---EDTHLITS-SGDQTCVLWDITTGLRTSVF 197 (379)
Q Consensus 122 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~~l~s~-~~d~~i~~wd~~~~~~~~~~ 197 (379)
+++++|+.|++|++.-++....... -....+.-|.+.|..++|..+ ++..|+++ ..|..|.+=|...|+....+
T Consensus 102 eliatgsndk~ik~l~fn~dt~~~~--g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~ 179 (350)
T KOG0641|consen 102 ELIATGSNDKTIKVLPFNADTCNAT--GHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHAL 179 (350)
T ss_pred CeEEecCCCceEEEEeccccccccc--CcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceee
Confidence 9999999999999998876432111 112345679999999999753 23456664 45788888888887766555
Q ss_pred cCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEe----c---ccCCeeEEEEccCCCEEEEeeC
Q 016974 198 GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH----G---HEGDVNTVKFFPDGNRFGTGSD 270 (379)
Q Consensus 198 ~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~----~---h~~~v~~v~~sp~g~~l~s~s~ 270 (379)
.+|.+.|.++--. ++-+|++|++|++||+||++... .+.++. + ...+|.+|+..|.|+.|++|-.
T Consensus 180 -----sghtghilalysw--n~~m~~sgsqdktirfwdlrv~~-~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~ 251 (350)
T KOG0641|consen 180 -----SGHTGHILALYSW--NGAMFASGSQDKTIRFWDLRVNS-CVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA 251 (350)
T ss_pred -----cCCcccEEEEEEe--cCcEEEccCCCceEEEEeeeccc-eeeeccCcccCCCcccceeEEEEECCCcceeeeccC
Confidence 6888888887433 45699999999999999998663 344332 1 1257999999999999999999
Q ss_pred CCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEeccc-ccCCccCceeEE
Q 016974 271 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS-LQNSHEGRITCL 349 (379)
Q Consensus 271 D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~-~~~~h~~~v~~~ 349 (379)
|.+..+||++.++.++.+.. +...|.|+.|||...|+++++.|..|++-|+.. .....+.. ....|...+..+
T Consensus 252 dssc~lydirg~r~iq~f~p-----hsadir~vrfsp~a~yllt~syd~~ikltdlqg-dla~el~~~vv~ehkdk~i~~ 325 (350)
T KOG0641|consen 252 DSSCMLYDIRGGRMIQRFHP-----HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG-DLAHELPIMVVAEHKDKAIQC 325 (350)
T ss_pred CCceEEEEeeCCceeeeeCC-----CccceeEEEeCCCceEEEEecccceEEEeeccc-chhhcCceEEEEeccCceEEE
Confidence 99999999999999988743 345699999999999999999999999999743 21111110 014588888888
Q ss_pred EECCCCCeEEEeeCCCcEEEEecCc
Q 016974 350 GLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 350 ~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
.|.|..--+++.|.|+++.+|.+++
T Consensus 326 rwh~~d~sfisssadkt~tlwa~~~ 350 (350)
T KOG0641|consen 326 RWHPQDFSFISSSADKTATLWALNG 350 (350)
T ss_pred EecCccceeeeccCcceEEEeccCC
Confidence 9999988889999999999998763
No 68
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2e-33 Score=235.98 Aligned_cols=286 Identities=18% Similarity=0.254 Sum_probs=222.8
Q ss_pred eccccccccEEEEEeeCCC-CeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcC
Q 016974 61 RTLQGHAGKVYSLDWTSER-NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLN 139 (379)
Q Consensus 61 ~~l~gH~~~v~~~~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~ 139 (379)
..|.||.+.|.|++=+|.. ..++|||.||.|+|||+.+..+..+++.|.+.|..++++. ..++++|+|++++.|.++
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~ 137 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKID 137 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeecc
Confidence 4689999999999999876 6799999999999999999999999999999999999987 788999999999999987
Q ss_pred CCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCC
Q 016974 140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 219 (379)
Q Consensus 140 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 219 (379)
.+ ..+++.+. ..+..+.-+.. +..+++++ ..|.|||..-...+..+.. -.+.+.++.++|...
T Consensus 138 ~~--------p~~tilg~-s~~~gIdh~~~-~~~FaTcG--e~i~IWD~~R~~Pv~smsw-----G~Dti~svkfNpvET 200 (433)
T KOG0268|consen 138 GP--------PLHTILGK-SVYLGIDHHRK-NSVFATCG--EQIDIWDEQRDNPVSSMSW-----GADSISSVKFNPVET 200 (433)
T ss_pred CC--------cceeeecc-ccccccccccc-cccccccC--ceeeecccccCCccceeec-----CCCceeEEecCCCcc
Confidence 52 33333332 23334443332 34577765 3588999876555554432 345788999999999
Q ss_pred cEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCC
Q 016974 220 RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299 (379)
Q Consensus 220 ~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 299 (379)
.+|++|+.|+.|-+||++.......... ...-+.++|+|.+-.+++|++|..+..+|++..+...... ..+...
T Consensus 201 sILas~~sDrsIvLyD~R~~~Pl~KVi~--~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~----~dhvsA 274 (433)
T KOG0268|consen 201 SILASCASDRSIVLYDLRQASPLKKVIL--TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVH----KDHVSA 274 (433)
T ss_pred hheeeeccCCceEEEecccCCccceeee--eccccceecCccccceeeccccccceehhhhhhcccchhh----ccccee
Confidence 9999999999999999997643333322 3456889999988889999999999999998754322221 224567
Q ss_pred eEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 300 VTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 300 v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
|.++.|||.|+-+++|+.|.+|+||.+..+.......+ .-...|.|+.||-|.++++|||.|+.||+|.-..
T Consensus 275 V~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht---kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 275 VMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT---KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred EEEeccCCCcchhccccccceEEEeecCCCcchhhhhH---hhhheeeEEEEeccccEEEecCCCcceeeeecch
Confidence 99999999999999999999999999876554332211 1234699999999999999999999999998654
No 69
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=7.7e-31 Score=244.46 Aligned_cols=272 Identities=14% Similarity=0.158 Sum_probs=206.5
Q ss_pred cEEEEEeeCCCCeEEEEcCCCcEEEEECCCCcee-------------eEeecCCcceEEEEECC-CCCEEEEeeCCCcEE
Q 016974 69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKT-------------HAIKLPCAWVMTCAFSP-TGQSVACGGLDSVCS 134 (379)
Q Consensus 69 ~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~-------------~~~~~~~~~v~~~~~s~-~g~~l~~~~~d~~i~ 134 (379)
.|.....++++..+++++.+..+..|+...+..+ ..+.+|.+.|.+++|+| ++++|++++.|++|+
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk 101 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIM 101 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEE
Confidence 3555556667777788888888888876433221 13567888999999999 889999999999999
Q ss_pred EEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEE
Q 016974 135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSI 214 (379)
Q Consensus 135 iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~ 214 (379)
+||+...............+.+|...|.+++|+|+...+|++++.|++|++||+.++.....+ .+|...|.+++|
T Consensus 102 IWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l-----~~h~~~V~sla~ 176 (493)
T PTZ00421 102 GWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVI-----KCHSDQITSLEW 176 (493)
T ss_pred EEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEE-----cCCCCceEEEEE
Confidence 999975321111112345678999999999999987678999999999999999988766555 578889999999
Q ss_pred eCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCC-eeEEEEccCCCEEEEee----CCCeEEEEECCCCceeEEEe
Q 016974 215 SGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGD-VNTVKFFPDGNRFGTGS----DDGTCRLFDIRTGHQLQVYY 289 (379)
Q Consensus 215 ~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~-v~~v~~sp~g~~l~s~s----~D~~i~iwd~~~~~~~~~~~ 289 (379)
++ ++.+|++++.|+.|++||++.. ..+..+.+|.+. +..+.|.|++..+++++ .|+.|++||+++........
T Consensus 177 sp-dG~lLatgs~Dg~IrIwD~rsg-~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~ 254 (493)
T PTZ00421 177 NL-DGSLLCTTSKDKKLNIIDPRDG-TIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTV 254 (493)
T ss_pred EC-CCCEEEEecCCCEEEEEECCCC-cEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEe
Confidence 97 6789999999999999999865 466778888765 45778999888877654 48999999998754322221
Q ss_pred eccCCCCCCCeEEEEEccCCCEEEEEE-ecCcEEEEeCCCceEEEecccccCCccCceeEEEECC
Q 016974 290 QQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 353 (379)
Q Consensus 290 ~~~~~~~~~~v~~~~fs~~g~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 353 (379)
..+ ....+....|++++++|++|+ .||.|++||+..++...... ..+..++..++|.|
T Consensus 255 ~~d---~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~---~~s~~~~~g~~~~p 313 (493)
T PTZ00421 255 DLD---QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSS---YSSVEPHKGLCMMP 313 (493)
T ss_pred ccC---CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEee---ccCCCCCcceEecc
Confidence 111 123456678999999999887 59999999998877654432 23455677888877
No 70
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=9e-32 Score=254.67 Aligned_cols=297 Identities=21% Similarity=0.313 Sum_probs=234.7
Q ss_pred cccccc-ccEEEEEeeCCCCeEEEEc--CCCcEEEEECCC------------CceeeEeecCCcceEEEEECCCCCEEEE
Q 016974 62 TLQGHA-GKVYSLDWTSERNRIVSAS--QDGRLIVWNALT------------SQKTHAIKLPCAWVMTCAFSPTGQSVAC 126 (379)
Q Consensus 62 ~l~gH~-~~v~~~~~~~~~~~l~s~s--~D~~v~iwd~~~------------~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 126 (379)
++.+|. ..|.+++.+|+|..++||+ .|+.++||+... .+.+.++..|.+.|.|+.|+|||++||+
T Consensus 7 ~wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAs 86 (942)
T KOG0973|consen 7 TWVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLAS 86 (942)
T ss_pred cccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEee
Confidence 455565 4689999999999999999 999999998632 2345667788999999999999999999
Q ss_pred eeCCCcEEEEEcCC--CC---------CCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEE
Q 016974 127 GGLDSVCSIFNLNS--PT---------DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS 195 (379)
Q Consensus 127 ~~~d~~i~iw~~~~--~~---------~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 195 (379)
||+|+.+.||.... .. .....+.....+.+|.+.|..+.|+|+ +.+|++++.|++|.+|+..+..++.
T Consensus 87 GSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~-~~~lvS~s~DnsViiwn~~tF~~~~ 165 (942)
T KOG0973|consen 87 GSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD-DSLLVSVSLDNSVIIWNAKTFELLK 165 (942)
T ss_pred ccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC-ccEEEEecccceEEEEccccceeee
Confidence 99999999999873 00 011123456678899999999999996 5799999999999999999987777
Q ss_pred EecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecc------cCCeeEEEEccCCCEEEEee
Q 016974 196 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH------EGDVNTVKFFPDGNRFGTGS 269 (379)
Q Consensus 196 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h------~~~v~~v~~sp~g~~l~s~s 269 (379)
.+ .+|...|..+.|.| -+++|+|-+.|++|++|++.... ..+.+.++ ...+..+.|||||++|++.-
T Consensus 166 vl-----~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~-i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n 238 (942)
T KOG0973|consen 166 VL-----RGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWG-IEKSITKPFEESPLTTFFLRLSWSPDGHHLASPN 238 (942)
T ss_pred ee-----ecccccccceEECC-ccCeeeeecCCceEEEEEcccce-eeEeeccchhhCCCcceeeecccCCCcCeecchh
Confidence 76 78999999999998 67899999999999999976532 23333332 23578999999999999873
Q ss_pred C----CCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccC-----CC------------EEEEEEecCcEEEEeCCC
Q 016974 270 D----DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS-----GR------------LLFAGYSNGDCYVWDTLL 328 (379)
Q Consensus 270 ~----D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~-----g~------------~l~sg~~dg~i~iwd~~~ 328 (379)
. -.++.|.+-.+.+.-..+.. |.+++.++.|+|. .+ .+|+|+.|++|.||....
T Consensus 239 A~n~~~~~~~IieR~tWk~~~~LvG-----H~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~ 313 (942)
T KOG0973|consen 239 AVNGGKSTIAIIERGTWKVDKDLVG-----HSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL 313 (942)
T ss_pred hccCCcceeEEEecCCceeeeeeec-----CCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence 2 33678887655543333332 3447899999863 11 578899999999999877
Q ss_pred ceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 329 AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 329 ~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
.++...... -....|..++|+|||-.|..+|.||+|.+..|..
T Consensus 314 ~RPl~vi~~---lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 314 PRPLFVIHN---LFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred CCchhhhhh---hhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 776655432 2356899999999999999999999999999875
No 71
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.5e-31 Score=218.56 Aligned_cols=299 Identities=18% Similarity=0.292 Sum_probs=212.9
Q ss_pred EeeccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCcee-e---EeecCCcceEEEEECCCCCEE-EEeeCCCcE
Q 016974 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKT-H---AIKLPCAWVMTCAFSPTGQSV-ACGGLDSVC 133 (379)
Q Consensus 59 ~~~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~-~---~~~~~~~~v~~~~~s~~g~~l-~~~~~d~~i 133 (379)
...+|+||.+.|++++|+.||++|+|++.|++|+||++...... | ......+..+.++|+||.+-+ +..-....+
T Consensus 78 ~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEE
Confidence 34589999999999999999999999999999999998653221 1 112233456789999998754 444456678
Q ss_pred EEEEcCCCCCCCCCcceee-----eecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccC
Q 016974 134 SIFNLNSPTDKDGNLPVSR-----MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTAD 208 (379)
Q Consensus 134 ~iw~~~~~~~~~~~~~~~~-----~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~ 208 (379)
++|-+.......+..+... .-..|.-.+..+... ++..+|++++.|.+|.+|++. |+.+..+. .....
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA-~~~k~imsas~dt~i~lw~lk-Gq~L~~id-----tnq~~ 230 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA-GNAKYIMSASLDTKICLWDLK-GQLLQSID-----TNQSS 230 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeec-CCceEEEEecCCCcEEEEecC-Cceeeeec-----ccccc
Confidence 9998875443222222111 123455555555554 456789999999999999998 65555442 22333
Q ss_pred eEEEEEeCCCCcEEEEecCCCcEEEEEccCCc-------cceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCC
Q 016974 209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVAS-------RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 281 (379)
Q Consensus 209 v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~-------~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~ 281 (379)
....+.+| +++++++++.--.|++|.+-..+ ..+.++.||...|..++|||+...+++.|.||+++|||+.-
T Consensus 231 n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 231 NYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred ccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 44556675 88999999999999999864321 13457889999999999999999999999999999999742
Q ss_pred C----c---eeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCC
Q 016974 282 G----H---QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD 354 (379)
Q Consensus 282 ~----~---~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d 354 (379)
. + .+.....+... ..+.-..++.+|+|+.||.+. ...+++|...+++....+ +..|.+.|.|++|+++
T Consensus 310 rY~~~qDpk~Lk~g~~pl~a-ag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~---e~~h~~~Is~is~~~~ 384 (420)
T KOG2096|consen 310 RYEAGQDPKILKEGSAPLHA-AGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPEL---EDIHSTTISSISYSSD 384 (420)
T ss_pred eEecCCCchHhhcCCcchhh-cCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhH---HHhhcCceeeEEecCC
Confidence 1 1 11111000001 112234899999999888654 347999998887755444 4679999999999999
Q ss_pred CCeEEEeeCCCcEEEEe
Q 016974 355 GSALCTGSWDTNLKIWA 371 (379)
Q Consensus 355 ~~~l~s~s~D~~i~vw~ 371 (379)
|+++|+++ |..+++..
T Consensus 385 g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 385 GKYIATCG-DRYVRVIR 400 (420)
T ss_pred CcEEeeec-ceeeeeec
Confidence 99999874 68888876
No 72
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=2e-31 Score=225.25 Aligned_cols=254 Identities=25% Similarity=0.403 Sum_probs=204.8
Q ss_pred eEeeccccccccEEEEEeeCCCC---eEEEEcCCCcEEEEECCCCce----eeEeecCCcceEEEEECCCCCEEEEeeCC
Q 016974 58 VCCRTLQGHAGKVYSLDWTSERN---RIVSASQDGRLIVWNALTSQK----THAIKLPCAWVMTCAFSPTGQSVACGGLD 130 (379)
Q Consensus 58 ~~~~~l~gH~~~v~~~~~~~~~~---~l~s~s~D~~v~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~g~~l~~~~~d 130 (379)
.+..++.||.++|.+++|.-... .|+++|.|.++++|..+.+.. .+.-++|...|-++...++|..+++|+.|
T Consensus 135 k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D 214 (423)
T KOG0313|consen 135 KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWD 214 (423)
T ss_pred ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeeccc
Confidence 46778999999999998865443 599999999999998876653 23345899999999999999999999999
Q ss_pred CcEEEEEcCCCCC------------------CCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCe
Q 016974 131 SVCSIFNLNSPTD------------------KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 192 (379)
Q Consensus 131 ~~i~iw~~~~~~~------------------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 192 (379)
..++||+...... ..+.....-++.||+.+|.++.|.+ ...+++++.|.+|+.||+.++.
T Consensus 215 ~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~ 292 (423)
T KOG0313|consen 215 TMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGG 292 (423)
T ss_pred ceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCceEeecccceEEEEEeeccc
Confidence 9999999332110 0011123456789999999999987 4579999999999999999986
Q ss_pred eEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCc--cceEEEecccCCeeEEEEcc-CCCEEEEee
Q 016974 193 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS--RAVRTFHGHEGDVNTVKFFP-DGNRFGTGS 269 (379)
Q Consensus 193 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~--~~~~~~~~h~~~v~~v~~sp-~g~~l~s~s 269 (379)
....+ ......++++.++ ..+++++|+.|..||+||.+... .+.+++.+|.+.|.++.|+| +...|++|+
T Consensus 293 ~~~~~------~~~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S 365 (423)
T KOG0313|consen 293 LKSTL------TTNKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGS 365 (423)
T ss_pred ceeee------ecCcceeEeeccc-ccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEe
Confidence 65544 2345688999997 67899999999999999988653 35578899999999999999 556789999
Q ss_pred CCCeEEEEECCCCc-eeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeC
Q 016974 270 DDGTCRLFDIRTGH-QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326 (379)
Q Consensus 270 ~D~~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~ 326 (379)
.|+++++||+|+.+ ++..+.. +...|.++.|+ .+.+|++|+.|.+|+|+..
T Consensus 366 ~D~t~klWDvRS~k~plydI~~-----h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 366 YDNTVKLWDVRSTKAPLYDIAG-----HNDKVLSVDWN-EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred cCCeEEEEEeccCCCcceeecc-----CCceEEEEecc-CCceEEeccCcceEEEecc
Confidence 99999999999876 5544432 23469999997 5679999999999999963
No 73
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.3e-32 Score=239.17 Aligned_cols=257 Identities=22% Similarity=0.378 Sum_probs=211.5
Q ss_pred CceeeEeecCCcceEEEEECC-CCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEe
Q 016974 99 SQKTHAIKLPCAWVMTCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITS 177 (379)
Q Consensus 99 ~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 177 (379)
.+.++++.+|...|.++.|.| .+.+|+++|.|+.|+||++... ..+.+++.||..+|..++|+.++ ..++|+
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~------~~~lrtf~gH~k~Vrd~~~s~~g-~~fLS~ 276 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD------RRCLRTFKGHRKPVRDASFNNCG-TSFLSA 276 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecC------cceehhhhcchhhhhhhhccccC-Ceeeee
Confidence 345678889999999999999 8999999999999999998752 23778999999999999999875 579999
Q ss_pred eCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEE
Q 016974 178 SGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK 257 (379)
Q Consensus 178 ~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~ 257 (379)
+.|+.+++||.++|.+...+. ....+.++.++|.+.+.|++|+.|+.|+.||+|.. +.++.+..|-+.|..+.
T Consensus 277 sfD~~lKlwDtETG~~~~~f~------~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~-kvvqeYd~hLg~i~~i~ 349 (503)
T KOG0282|consen 277 SFDRFLKLWDTETGQVLSRFH------LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG-KVVQEYDRHLGAILDIT 349 (503)
T ss_pred ecceeeeeeccccceEEEEEe------cCCCceeeecCCCCCcEEEEecCCCcEEEEeccch-HHHHHHHhhhhheeeeE
Confidence 999999999999998877663 12356788999988899999999999999999976 57778888999999999
Q ss_pred EccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEeccc
Q 016974 258 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS 337 (379)
Q Consensus 258 ~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 337 (379)
|-++|.++++.++|++++||+.+.+-.++...... .-..-++..+|+++++++-+-|..|.+|.+...-.. +...
T Consensus 350 F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~----~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~-nkkK 424 (503)
T KOG0282|consen 350 FVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPE----MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRL-NKKK 424 (503)
T ss_pred EccCCceEeeeccCccEEEEEcCCCccchhhcchh----hccCcceecCCCCCeehhhccCceEEEEeccccccc-CHhh
Confidence 99999999999999999999998876655443221 112458889999999999999999999985432211 1111
Q ss_pred ccCCccC--ceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 338 LQNSHEG--RITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 338 ~~~~h~~--~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
...+|.. --..+.|||||.+|++|+.||.+.+|++..
T Consensus 425 ~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt 463 (503)
T KOG0282|consen 425 RFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKT 463 (503)
T ss_pred hhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechh
Confidence 1245543 345678999999999999999999999865
No 74
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=1.5e-29 Score=237.03 Aligned_cols=258 Identities=16% Similarity=0.226 Sum_probs=197.3
Q ss_pred EEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCC-CCEEEEeeCCCcEEEEEcCCCCCCCCC-cceeeeecccccce
Q 016974 84 SASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT-GQSVACGGLDSVCSIFNLNSPTDKDGN-LPVSRMLSGHKGYV 161 (379)
Q Consensus 84 s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~d~~i~iw~~~~~~~~~~~-~~~~~~~~~h~~~v 161 (379)
.|+.++.|++|+..+...+..+..|...|.+++|+|+ +.+|++|+.|++|+||++......... ......+.+|...|
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V 128 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI 128 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence 3778999999998887778888999999999999997 789999999999999999753211000 11234577999999
Q ss_pred EEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCcc
Q 016974 162 SCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR 241 (379)
Q Consensus 162 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~ 241 (379)
.+++|+|++...|++++.|++|++||++++.....+ .|...|.+++|++ ++.+|++++.|+.|++||++.. .
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i------~~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg-~ 200 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQI------NMPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQ-E 200 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEE------ecCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCC-c
Confidence 999999987666789999999999999988655443 2456799999997 6778999999999999999965 5
Q ss_pred ceEEEecccCCeeE-----EEEccCCCEEEEeeCCC----eEEEEECCC-CceeEEEeeccCCCCCCCeEEEEEccCCCE
Q 016974 242 AVRTFHGHEGDVNT-----VKFFPDGNRFGTGSDDG----TCRLFDIRT-GHQLQVYYQQHGENEIPHVTSIAFSISGRL 311 (379)
Q Consensus 242 ~~~~~~~h~~~v~~-----v~~sp~g~~l~s~s~D~----~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~ 311 (379)
.+..+.+|.+.+.+ ..|++++.+|++++.|+ +|+|||++. +..+..... ....+.+...-..++|.+
T Consensus 201 ~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~l---d~~~~~L~p~~D~~tg~l 277 (568)
T PTZ00420 201 IASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSI---DNASAPLIPHYDESTGLI 277 (568)
T ss_pred EEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEe---cCCccceEEeeeCCCCCE
Confidence 66788899876543 34568999999988764 799999995 444443321 112233444555667999
Q ss_pred EEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCC
Q 016974 312 LFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG 355 (379)
Q Consensus 312 l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~ 355 (379)
+++|..|+.|++|++..+. ...+.. -.+..++.+++|.|.-
T Consensus 278 ~lsGkGD~tIr~~e~~~~~-~~~l~~--~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 278 YLIGKGDGNCRYYQHSLGS-IRKVNE--YKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEEEECCCeEEEEEccCCc-EEeecc--cccCCCccceEEcccc
Confidence 9999999999999987653 333332 2366788999999953
No 75
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=8.2e-30 Score=224.34 Aligned_cols=248 Identities=34% Similarity=0.545 Sum_probs=208.7
Q ss_pred eEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCe
Q 016974 103 HAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT 182 (379)
Q Consensus 103 ~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~ 182 (379)
.+++.|...|.+++|+|+++++++++.|+.+++|++.... ....+.+|...+..+.|.|++ ..+++++.|+.
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~-------~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~ 74 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-------LLRTLKGHTGPVRDVAASADG-TYLASGSSDKT 74 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC-------cEEEEecCCcceeEEEECCCC-CEEEEEcCCCe
Confidence 3456788899999999999999999999999999987532 334567888889899999975 57999999999
Q ss_pred EEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCC
Q 016974 183 CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG 262 (379)
Q Consensus 183 i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g 262 (379)
|++||+.++.....+ ..|...+.++.+.+. +.++++++.|+.|++||++.. +....+..|...|.+++|+|++
T Consensus 75 i~i~~~~~~~~~~~~-----~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~ 147 (289)
T cd00200 75 IRLWDLETGECVRTL-----TGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETG-KCLTTLRGHTDWVNSVAFSPDG 147 (289)
T ss_pred EEEEEcCcccceEEE-----eccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCc-EEEEEeccCCCcEEEEEEcCcC
Confidence 999999876544444 467778999999974 678888888999999999854 5566777899999999999999
Q ss_pred CEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCc
Q 016974 263 NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH 342 (379)
Q Consensus 263 ~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h 342 (379)
.++++++.|+.|++||+++++.+..+.. +...+.++.|+|+++.+++++.||.|++||...++....+ ..|
T Consensus 148 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~----~~~ 218 (289)
T cd00200 148 TFVASSSQDGTIKLWDLRTGKCVATLTG-----HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL----RGH 218 (289)
T ss_pred CEEEEEcCCCcEEEEEccccccceeEec-----CccccceEEECCCcCEEEEecCCCcEEEEECCCCceecch----hhc
Confidence 9999888899999999988776665542 2336899999999999999999999999999877666554 467
Q ss_pred cCceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 343 EGRITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 343 ~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
...|.+++|+|++.++++++.|+.|++|++..
T Consensus 219 ~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~ 250 (289)
T cd00200 219 ENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT 250 (289)
T ss_pred CCceEEEEEcCCCcEEEEEcCCCcEEEEEcCC
Confidence 88999999999999999999899999999874
No 76
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=1.1e-30 Score=243.83 Aligned_cols=252 Identities=27% Similarity=0.454 Sum_probs=214.6
Q ss_pred eeEeec-cccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEE
Q 016974 57 LVCCRT-LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI 135 (379)
Q Consensus 57 ~~~~~~-l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~i 135 (379)
...+.+ |.||.+.|+++++...+++|++||.|.++++||..+|++.+.+.+|...+.++... +.++++|+.|.+|++
T Consensus 238 ~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkV 315 (537)
T KOG0274|consen 238 GYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKV 315 (537)
T ss_pred ceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEE
Confidence 344555 99999999999998778899999999999999999999999999999888777544 557888999999999
Q ss_pred EEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEe
Q 016974 136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS 215 (379)
Q Consensus 136 w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 215 (379)
|++.++. ....+.+|.+.|.++... +..+++|+.|++|++||+.++.++..+ .+|...|.++.+.
T Consensus 316 W~v~n~~-------~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl-----~gH~~~V~sl~~~ 380 (537)
T KOG0274|consen 316 WDVTNGA-------CLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSL-----SGHTGRVYSLIVD 380 (537)
T ss_pred EeccCcc-------eEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeee-----cCCcceEEEEEec
Confidence 9998543 566777899999999986 358999999999999999999988887 6899999999776
Q ss_pred CCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCC
Q 016974 216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN 295 (379)
Q Consensus 216 ~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~ 295 (379)
.. ..+++|+.|+.|++||+++..+++.++.+|..-|..+.+ .++.|++++.|++|++||..+++.+..+...
T Consensus 381 ~~--~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~---- 452 (537)
T KOG0274|consen 381 SE--NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGR---- 452 (537)
T ss_pred Cc--ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccC----
Confidence 42 689999999999999998764678889999998876665 5789999999999999999999988877542
Q ss_pred CCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEec
Q 016974 296 EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL 335 (379)
Q Consensus 296 ~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~ 335 (379)
+...|..+++. ...+++++.||++++||+.++.....+
T Consensus 453 ~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 453 HVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred CcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 33457777765 468899999999999999888776654
No 77
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.1e-30 Score=213.14 Aligned_cols=278 Identities=21% Similarity=0.335 Sum_probs=210.6
Q ss_pred ccccEEEEEeeC-CCCeEEEEcCCCcEEEEECCCC-ce-eeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCC
Q 016974 66 HAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALTS-QK-THAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPT 142 (379)
Q Consensus 66 H~~~v~~~~~~~-~~~~l~s~s~D~~v~iwd~~~~-~~-~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~ 142 (379)
-.+.|.+++||| ...+++.+|.|++||+|+++.. .. .+....+.++|.+++|+.+|..+++|+-|+.+++||+.+..
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q 105 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ 105 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence 356799999999 5566779999999999999863 32 34456678899999999999999999999999999998642
Q ss_pred CCCCCcceeeeecccccceEEEEEecCCC-ceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcE
Q 016974 143 DKDGNLPVSRMLSGHKGYVSCCQYVPDED-THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRM 221 (379)
Q Consensus 143 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 221 (379)
...+..|.++|..|.|.+... ..|++||.|++|+.||.+....+..+. -...+++++.- ..+
T Consensus 106 --------~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~------LPeRvYa~Dv~---~pm 168 (347)
T KOG0647|consen 106 --------VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ------LPERVYAADVL---YPM 168 (347)
T ss_pred --------eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee------ccceeeehhcc---Cce
Confidence 234667999999999987543 368999999999999999876555442 12346665543 347
Q ss_pred EEEecCCCcEEEEEccCCccceEEEe-cccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCcee--EEEeeccCCC---
Q 016974 222 FVSGSCDSTARLWDTRVASRAVRTFH-GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL--QVYYQQHGEN--- 295 (379)
Q Consensus 222 l~sg~~d~~i~vwd~~~~~~~~~~~~-~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~--~~~~~~~~~~--- 295 (379)
++.+..++.|.++.+++.....+... .-.-.+.||+..+|.+..+.|+-.|.+-|..+..+.+. ..|..+...+
T Consensus 169 ~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~ 248 (347)
T KOG0647|consen 169 AVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVN 248 (347)
T ss_pred eEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCC
Confidence 88899999999999975532221111 12234789999999888899999999999988775332 2232222111
Q ss_pred -CCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEE-eeCC
Q 016974 296 -EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCT-GSWD 364 (379)
Q Consensus 296 -~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s-~s~D 364 (379)
....|++++|+|....|++.++||++.+||......+.+. ..|..+|+|.+|+.+|+++|= .+.|
T Consensus 249 ~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s----~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 249 DDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTS----ETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred CceEEecceEeecccceEEEecCCceEEEecchhhhhhhcc----CcCCCccceeEecCCCCEEEEEeecc
Confidence 2345889999999999999999999999997665544443 468899999999999998874 4444
No 78
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=3.9e-32 Score=217.71 Aligned_cols=250 Identities=26% Similarity=0.480 Sum_probs=208.7
Q ss_pred EeeccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEc
Q 016974 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNL 138 (379)
Q Consensus 59 ~~~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~ 138 (379)
.+-+|.||.+.|++...+.+...-||++.|-+.++||..+|..++++. |..-|.+|+|+.|.++|++|+.++.++|+|+
T Consensus 51 wigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdl 129 (334)
T KOG0278|consen 51 WIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDL 129 (334)
T ss_pred cEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhc
Confidence 356999999999999998888888999999999999999999888874 4566999999999999999999999999999
Q ss_pred CCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCC
Q 016974 139 NSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN 218 (379)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 218 (379)
+.+.- ....+.+|.+.|..+-|... ++.++|++.|++||+||.+++..+..+. ....|.++.+++ +
T Consensus 130 n~p~A------pp~E~~ghtg~Ir~v~wc~e-D~~iLSSadd~tVRLWD~rTgt~v~sL~------~~s~VtSlEvs~-d 195 (334)
T KOG0278|consen 130 NRPKA------PPKEISGHTGGIRTVLWCHE-DKCILSSADDKTVRLWDHRTGTEVQSLE------FNSPVTSLEVSQ-D 195 (334)
T ss_pred cCCCC------CchhhcCCCCcceeEEEecc-CceEEeeccCCceEEEEeccCcEEEEEe------cCCCCcceeecc-C
Confidence 86542 23457799999999999875 4678888999999999999998877663 234688888885 5
Q ss_pred CcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCC
Q 016974 219 SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP 298 (379)
Q Consensus 219 ~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~ 298 (379)
+++ ++-...+.|.+||.... .+++.+. -...|.+.+.+|+...+++|++|..++.||..++..+..+.. .+-+
T Consensus 196 G~i-lTia~gssV~Fwdaksf-~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nk----gh~g 268 (334)
T KOG0278|consen 196 GRI-LTIAYGSSVKFWDAKSF-GLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNK----GHFG 268 (334)
T ss_pred CCE-EEEecCceeEEeccccc-cceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCceeeeccc----CCCC
Confidence 554 46667789999998765 3444443 245699999999999999999999999999999998876522 2346
Q ss_pred CeEEEEEccCCCEEEEEEecCcEEEEeCCCce
Q 016974 299 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK 330 (379)
Q Consensus 299 ~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~ 330 (379)
+|-|+.|+|+|...++|+.||+|++|....++
T Consensus 269 pVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 269 PVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred ceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 79999999999999999999999999865443
No 79
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=100.00 E-value=2.2e-30 Score=234.07 Aligned_cols=280 Identities=26% Similarity=0.409 Sum_probs=222.6
Q ss_pred EeeccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCcee--eEeecCCcceEE-EEECC-CCCEEEEeeCCCcEE
Q 016974 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKT--HAIKLPCAWVMT-CAFSP-TGQSVACGGLDSVCS 134 (379)
Q Consensus 59 ~~~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~--~~~~~~~~~v~~-~~~s~-~g~~l~~~~~d~~i~ 134 (379)
..+.+.||...|..+++.+ +-.++++|.||++++|+-...+.+ +.+..|.+++.. ++|.+ ++..+++|++|.++.
T Consensus 6 ls~~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~ 84 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTII 84 (745)
T ss_pred eEEEeccCccchheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEE
Confidence 3467999999999998775 458999999999999997554433 456677888776 88875 555799999999999
Q ss_pred EEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEE
Q 016974 135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSI 214 (379)
Q Consensus 135 iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~ 214 (379)
+|.+.+.. ...++.||...|.++....+ ..++|||.|.++++|-.... ... ..+|...|.++..
T Consensus 85 v~~~~~~~-------P~~~LkgH~snVC~ls~~~~--~~~iSgSWD~TakvW~~~~l--~~~-----l~gH~asVWAv~~ 148 (745)
T KOG0301|consen 85 VFKLSQAE-------PLYTLKGHKSNVCSLSIGED--GTLISGSWDSTAKVWRIGEL--VYS-----LQGHTASVWAVAS 148 (745)
T ss_pred EEecCCCC-------chhhhhccccceeeeecCCc--CceEecccccceEEecchhh--hcc-----cCCcchheeeeee
Confidence 99887532 44678999999988776443 35999999999999986542 222 2699999999999
Q ss_pred eCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCC
Q 016974 215 SGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE 294 (379)
Q Consensus 215 ~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~ 294 (379)
.|.+ .++||+.|++|++|.- .+.+++|.||+..|..+++-+++ .|+|+++||.|++|++ +|+.+..+..
T Consensus 149 l~e~--~~vTgsaDKtIklWk~---~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~g---- 217 (745)
T KOG0301|consen 149 LPEN--TYVTGSADKTIKLWKG---GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHG---- 217 (745)
T ss_pred cCCC--cEEeccCcceeeeccC---CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeec----
Confidence 8754 7899999999999975 46788999999999999998875 4889999999999998 5666554432
Q ss_pred CCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 295 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 295 ~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
+...+.+++..++++.+++.++|++++||+..... ..+ ....-.|+++.+-++|. |++|+.||.||||....
T Consensus 218 -htn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~~--q~I----~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 218 -HTNFVYSISMALSDGLIVSTGEDRTLRIWKKDECV--QVI----TLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred -cceEEEEEEecCCCCeEEEecCCceEEEeecCceE--EEE----ecCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 34579999988999999999999999999976333 222 22334788888877777 56799999999998764
No 80
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.98 E-value=3.1e-30 Score=217.12 Aligned_cols=252 Identities=19% Similarity=0.341 Sum_probs=205.8
Q ss_pred eeccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcC
Q 016974 60 CRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLN 139 (379)
Q Consensus 60 ~~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~ 139 (379)
...+.||.+.|+++.|+.||.+||||..+|.|+||+..++.....+......+-=+.|+|.+..|+.|+.||.+-+|.+.
T Consensus 99 ~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip 178 (399)
T KOG0296|consen 99 AGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIP 178 (399)
T ss_pred eeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECC
Confidence 45788999999999999999999999999999999999999888887666777888999999999999999999999987
Q ss_pred CCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCc------c------------
Q 016974 140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE------F------------ 201 (379)
Q Consensus 140 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~------~------------ 201 (379)
+. ...+.+.||...+++-.|.|++ +.++++..||+|++|++.++.....+... .
T Consensus 179 ~~-------~~~kv~~Gh~~~ct~G~f~pdG-Kr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~ 250 (399)
T KOG0296|consen 179 SQ-------ALCKVMSGHNSPCTCGEFIPDG-KRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTK 250 (399)
T ss_pred Cc-------ceeeEecCCCCCcccccccCCC-ceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEe
Confidence 53 2457789999999999999985 67999999999999999998766544310 0
Q ss_pred ----------------------------ccCCccCeEEEEEeC--CCCcEEEEecCCCcEEEEEccCCccceEEEecccC
Q 016974 202 ----------------------------QSGHTADVLSVSISG--SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG 251 (379)
Q Consensus 202 ----------------------------~~~h~~~v~~~~~~~--~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~ 251 (379)
...+...+.++.+.| ..-.++|+|+.||+|.|||+... .++..-.|+.
T Consensus 251 g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~--~~R~~c~he~ 328 (399)
T KOG0296|consen 251 GNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS--TLRHICEHED 328 (399)
T ss_pred ccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc--hhheeccCCC
Confidence 001111112222211 12347889999999999998754 3444446899
Q ss_pred CeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCC
Q 016974 252 DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327 (379)
Q Consensus 252 ~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~ 327 (379)
.|..+.|-+ ..+|++++.||.|+.||.|+|.....+.. |...|.+++++|+++++++++.|++.+||++.
T Consensus 329 ~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~G-----H~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 329 GVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTG-----HQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred ceEEEEEcC-cchheeeccCceEEeeeccccceEEEEec-----CchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 999999998 77999999999999999999988776643 34579999999999999999999999999853
No 81
>PTZ00421 coronin; Provisional
Probab=99.98 E-value=1.4e-29 Score=236.13 Aligned_cols=251 Identities=19% Similarity=0.230 Sum_probs=187.4
Q ss_pred eEEEEECCCCCEEEEeeCCCcEEEEEcCCCC-----CCCCCcc-eeeeecccccceEEEEEecCCCceEEEeeCCCeEEE
Q 016974 112 VMTCAFSPTGQSVACGGLDSVCSIFNLNSPT-----DKDGNLP-VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVL 185 (379)
Q Consensus 112 v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~-----~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~ 185 (379)
+....+++++..+++++.+.....|+..... ...|..+ ....+.+|.+.|.+++|+|.++..|++|+.|++|++
T Consensus 23 i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkI 102 (493)
T PTZ00421 23 VTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMG 102 (493)
T ss_pred cccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEE
Confidence 4444566777777777777777777654321 1111111 123467999999999999955578999999999999
Q ss_pred eecCCCee-------EEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEE
Q 016974 186 WDITTGLR-------TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKF 258 (379)
Q Consensus 186 wd~~~~~~-------~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~ 258 (379)
||+.++.. ...+ .+|...|.++.|+|...++|++|+.|+.|++||+... .....+.+|...|.+++|
T Consensus 103 Wdi~~~~~~~~~~~~l~~L-----~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg-~~~~~l~~h~~~V~sla~ 176 (493)
T PTZ00421 103 WGIPEEGLTQNISDPIVHL-----QGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG-KAVEVIKCHSDQITSLEW 176 (493)
T ss_pred EecCCCccccccCcceEEe-----cCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC-eEEEEEcCCCCceEEEEE
Confidence 99976421 2222 5799999999999876789999999999999999865 566778899999999999
Q ss_pred ccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEE----ecCcEEEEeCCCceEEEe
Q 016974 259 FPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY----SNGDCYVWDTLLAKVVLN 334 (379)
Q Consensus 259 sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~----~dg~i~iwd~~~~~~~~~ 334 (379)
+|+|.+|++++.|++|++||+++++.+..+.. |.. ..+..+.|.+++..+++++ .|+.|++||+........
T Consensus 177 spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~-H~~---~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~ 252 (493)
T PTZ00421 177 NLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEA-HAS---AKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYS 252 (493)
T ss_pred ECCCCEEEEecCCCEEEEEECCCCcEEEEEec-CCC---CcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCcee
Confidence 99999999999999999999999887665432 211 1245677888888777654 478999999875442222
Q ss_pred cccccCCccCceeEEEECCCCCeEEEee-CCCcEEEEecCc
Q 016974 335 LGSLQNSHEGRITCLGLSADGSALCTGS-WDTNLKIWAFGG 374 (379)
Q Consensus 335 ~~~~~~~h~~~v~~~~~s~d~~~l~s~s-~D~~i~vw~~~~ 374 (379)
.. ...+...+....|++|+++|++++ .|++|++|++..
T Consensus 253 ~~--~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 253 TV--DLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred Ee--ccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence 11 112334566678999999999887 599999999875
No 82
>PTZ00420 coronin; Provisional
Probab=99.98 E-value=2.1e-29 Score=235.96 Aligned_cols=237 Identities=16% Similarity=0.194 Sum_probs=174.8
Q ss_pred eeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCee-EEEe--cCcccc
Q 016974 127 GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-TSVF--GGEFQS 203 (379)
Q Consensus 127 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~--~~~~~~ 203 (379)
||.++.+++|+... .+....+.+|.+.|.+++|+|+.+.+|++|+.|++|++||+.++.. ...+ ......
T Consensus 50 GG~~gvI~L~~~~r-------~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~ 122 (568)
T PTZ00420 50 GGLIGAIRLENQMR-------KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILK 122 (568)
T ss_pred CCceeEEEeeecCC-------CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEee
Confidence 45677889998653 1345678899999999999998667899999999999999976421 1000 000125
Q ss_pred CCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCc
Q 016974 204 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH 283 (379)
Q Consensus 204 ~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~ 283 (379)
+|...|.++.|+|....++++++.|+.|++||++... ....+. |...|.+++|+|+|.+|++++.|++|+|||+++++
T Consensus 123 gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~-~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~ 200 (568)
T PTZ00420 123 GHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK-RAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE 200 (568)
T ss_pred cCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCc-EEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCc
Confidence 7899999999998766677899999999999998663 344454 56789999999999999999999999999999998
Q ss_pred eeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecC----cEEEEeCCC-ceEEEecccccCCccCceeEEEECCCCCeE
Q 016974 284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG----DCYVWDTLL-AKVVLNLGSLQNSHEGRITCLGLSADGSAL 358 (379)
Q Consensus 284 ~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg----~i~iwd~~~-~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l 358 (379)
.+..+..+.+......+....|++++++|++++.|+ +|+|||+.. .+.+... .. ..+.+.+......++|.++
T Consensus 201 ~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~-~l-d~~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 201 IASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTM-SI-DNASAPLIPHYDESTGLIY 278 (568)
T ss_pred EEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEE-Ee-cCCccceEEeeeCCCCCEE
Confidence 876654322211111234456779999999987664 799999874 3333322 11 2344555545456679999
Q ss_pred EEeeCCCcEEEEecCc
Q 016974 359 CTGSWDTNLKIWAFGG 374 (379)
Q Consensus 359 ~s~s~D~~i~vw~~~~ 374 (379)
++|+.|++||+|++..
T Consensus 279 lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSL 294 (568)
T ss_pred EEEECCCeEEEEEccC
Confidence 9999999999999854
No 83
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=8.6e-31 Score=235.16 Aligned_cols=281 Identities=22% Similarity=0.420 Sum_probs=223.2
Q ss_pred CCCCeEEEEcCCCcEEEEECCCCc------eeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcce
Q 016974 77 SERNRIVSASQDGRLIVWNALTSQ------KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPV 150 (379)
Q Consensus 77 ~~~~~l~s~s~D~~v~iwd~~~~~------~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~ 150 (379)
|.+++|+|||.||.|++|+...-. ....+..|..||..++...+|+.|+++|.|.+|++|+..... .-+
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-----~~c 109 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-----TFC 109 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc-----chh
Confidence 356679999999999999875432 256677899999999999999999999999999999987432 234
Q ss_pred eeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCee--EEEec----CccccCCccCeEEEEEeCCCCcEEEE
Q 016974 151 SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR--TSVFG----GEFQSGHTADVLSVSISGSNSRMFVS 224 (379)
Q Consensus 151 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~----~~~~~~h~~~v~~~~~~~~~~~~l~s 224 (379)
..++..|+++|.|+++...+...+++|+.|+.|.+||+.++.. +..+. .....++...+++++.++ .+.++++
T Consensus 110 ~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivs 188 (735)
T KOG0308|consen 110 MSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVS 188 (735)
T ss_pred HhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cceEEEe
Confidence 5677889999999999544557899999999999999997733 11111 111237889999999986 5678999
Q ss_pred ecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEE
Q 016974 225 GSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIA 304 (379)
Q Consensus 225 g~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 304 (379)
|+..+.|++||.++..+ +-.++||+..|..+..++||+.++|+|.||+|++||+...+++.++.. |. ..|.++.
T Consensus 189 Ggtek~lr~wDprt~~k-imkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~v-H~----e~VWaL~ 262 (735)
T KOG0308|consen 189 GGTEKDLRLWDPRTCKK-IMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIV-HK----EGVWALQ 262 (735)
T ss_pred cCcccceEEeccccccc-eeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEe-cc----CceEEEe
Confidence 99999999999997754 445789999999999999999999999999999999999888877644 22 3489999
Q ss_pred EccCCCEEEEEEecCcEEEEeCCCce-EEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 305 FSISGRLLFAGYSNGDCYVWDTLLAK-VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 305 fs~~g~~l~sg~~dg~i~iwd~~~~~-~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
.+|+=..+++|+.||.|+.=|+.+.. ....+ .-..+|..+..+...+-+-++++|+.|+-|....
T Consensus 263 ~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlic-----k~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 263 SSPSFTHVYSGGRDGNIYRTDLRNPAKSTLIC-----KEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP 328 (735)
T ss_pred eCCCcceEEecCCCCcEEecccCCchhheEee-----cCCCchhhhhhccccCCceeeeccccceecCCcc
Confidence 99999999999999999999987742 22222 1234667677665444446788999999997654
No 84
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=7.3e-30 Score=220.68 Aligned_cols=264 Identities=17% Similarity=0.306 Sum_probs=210.1
Q ss_pred EeeccccccccEEEEEeeCCC-CeEEEEcCCCcEEEEECCCCce----------eeEeecCCcceEEEEECCCC-CEEEE
Q 016974 59 CCRTLQGHAGKVYSLDWTSER-NRIVSASQDGRLIVWNALTSQK----------THAIKLPCAWVMTCAFSPTG-QSVAC 126 (379)
Q Consensus 59 ~~~~l~gH~~~v~~~~~~~~~-~~l~s~s~D~~v~iwd~~~~~~----------~~~~~~~~~~v~~~~~s~~g-~~l~~ 126 (379)
.+..---|.+.|+.+...|+. ..+||++..+.|.|||..+-.. ...+.+|...-..++|++.. -.|++
T Consensus 116 ~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls 195 (422)
T KOG0264|consen 116 EISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLS 195 (422)
T ss_pred EEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEee
Confidence 333445699999999999865 5678889999999999854221 12566777767788999875 48999
Q ss_pred eeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCc
Q 016974 127 GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHT 206 (379)
Q Consensus 127 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~ 206 (379)
++.|++|++||++..............+.+|...|..++|++.....|.+++.|+.+.|||.+++ ... ......+|.
T Consensus 196 ~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~~~--~~~~~~ah~ 272 (422)
T KOG0264|consen 196 GSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-TSK--PSHSVKAHS 272 (422)
T ss_pred ccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-CCC--CcccccccC
Confidence 99999999999987544333344556788999999999999988888999999999999999963 111 111226899
Q ss_pred cCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccC-CCEEEEeeCCCeEEEEECCCCcee
Q 016974 207 ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD-GNRFGTGSDDGTCRLFDIRTGHQL 285 (379)
Q Consensus 207 ~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~-g~~l~s~s~D~~i~iwd~~~~~~~ 285 (379)
+.+.+++|+|-+..+||||+.|++|.+||+|+...++..+.+|...|.+|.|||. ...|||++.|+.+.+||+..-...
T Consensus 273 ~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~e 352 (422)
T KOG0264|consen 273 AEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEE 352 (422)
T ss_pred CceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccc
Confidence 9999999999999999999999999999999998899999999999999999995 667899999999999998642211
Q ss_pred -----------EEEeeccCCCCCCCeEEEEEccCCCE-EEEEEecCcEEEEeCC
Q 016974 286 -----------QVYYQQHGENEIPHVTSIAFSISGRL-LFAGYSNGDCYVWDTL 327 (379)
Q Consensus 286 -----------~~~~~~~~~~~~~~v~~~~fs~~g~~-l~sg~~dg~i~iwd~~ 327 (379)
..++.+ .+|...|..+.|+|+..+ |++.+.|+.+.||+..
T Consensus 353 q~~eda~dgppEllF~H--gGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 353 QSPEDAEDGPPELLFIH--GGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cChhhhccCCcceeEEe--cCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 122222 234567999999999885 5667899999999853
No 85
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5.9e-30 Score=222.91 Aligned_cols=244 Identities=25% Similarity=0.361 Sum_probs=205.8
Q ss_pred eccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCC-CEEEEeeCCCcEEEEEcC
Q 016974 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG-QSVACGGLDSVCSIFNLN 139 (379)
Q Consensus 61 ~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~d~~i~iw~~~ 139 (379)
+++....+.|++++|-.||++|+.|...|.|+|+|..+...+..+..|..++..+.|+|++ +.+++|++|+.+++||++
T Consensus 62 k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s 141 (487)
T KOG0310|consen 62 KTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLS 141 (487)
T ss_pred hhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcC
Confidence 3455677889999999999999999999999999976666778889999999999999965 578889999999999998
Q ss_pred CCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCC-eeEEEecCccccCCccCeEEEEEeCCC
Q 016974 140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVSISGSN 218 (379)
Q Consensus 140 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~ 218 (379)
+.. +...+.+|+++|.|.+|+|.++..++|||.||+|++||.++. ..... ..|..+|.++.+.|+
T Consensus 142 ~a~-------v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~e------lnhg~pVe~vl~lps- 207 (487)
T KOG0310|consen 142 TAY-------VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVE------LNHGCPVESVLALPS- 207 (487)
T ss_pred CcE-------EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEE------ecCCCceeeEEEcCC-
Confidence 532 344678999999999999998889999999999999999876 33333 358889999999874
Q ss_pred CcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCC
Q 016974 219 SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP 298 (379)
Q Consensus 219 ~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~ 298 (379)
+.++++++- ..|++||+-.+.+.+..+..|...|+|+++..++..|+|||-|+.+++||+.+-+.+..+.- .+
T Consensus 208 gs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~------~~ 280 (487)
T KOG0310|consen 208 GSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY------PG 280 (487)
T ss_pred CCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec------cc
Confidence 457777664 47999999877666665556999999999999999999999999999999877666655432 35
Q ss_pred CeEEEEEccCCCEEEEEEecCcEEEEe
Q 016974 299 HVTSIAFSISGRLLFAGYSNGDCYVWD 325 (379)
Q Consensus 299 ~v~~~~fs~~g~~l~sg~~dg~i~iwd 325 (379)
+|.+++.+|+++.++.|-.||.+.+-+
T Consensus 281 pvLsiavs~dd~t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 281 PVLSIAVSPDDQTVVIGMSNGLVSIRR 307 (487)
T ss_pred ceeeEEecCCCceEEEecccceeeeeh
Confidence 799999999999999999999888764
No 86
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.3e-28 Score=201.76 Aligned_cols=252 Identities=20% Similarity=0.295 Sum_probs=195.4
Q ss_pred eEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeC--C
Q 016974 103 HAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG--D 180 (379)
Q Consensus 103 ~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~--d 180 (379)
+.++...+.+.++.|+++|.++++++.|.+++|||..++. ..+++..++..+..+.|..... .++.++. |
T Consensus 8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~-------~~~ti~skkyG~~~~~Fth~~~-~~i~sStk~d 79 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGK-------QVKTINSKKYGVDLACFTHHSN-TVIHSSTKED 79 (311)
T ss_pred cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCc-------eeeEeecccccccEEEEecCCc-eEEEccCCCC
Confidence 3445567789999999999999999999999999987643 3344555555677777766543 4555555 8
Q ss_pred CeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEcc
Q 016974 181 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP 260 (379)
Q Consensus 181 ~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp 260 (379)
.+|+..++.+...+..+ .||...|.++..+|.+ ..|+|++.|++||+||++... ....+ +...-..++|.|
T Consensus 80 ~tIryLsl~dNkylRYF-----~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~-cqg~l--~~~~~pi~AfDp 150 (311)
T KOG1446|consen 80 DTIRYLSLHDNKYLRYF-----PGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKK-CQGLL--NLSGRPIAAFDP 150 (311)
T ss_pred CceEEEEeecCceEEEc-----CCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCC-CceEE--ecCCCcceeECC
Confidence 99999999999888877 7999999999999865 789999999999999999553 33222 233345589999
Q ss_pred CCCEEEEeeCCCeEEEEECCCC--ceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccc
Q 016974 261 DGNRFGTGSDDGTCRLFDIRTG--HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSL 338 (379)
Q Consensus 261 ~g~~l~s~s~D~~i~iwd~~~~--~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~ 338 (379)
.|-++|++.....|++||+|.- .+...+.-. .+....++.+.|||||++|+.+...+.+++.|.-.|....++...
T Consensus 151 ~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~--~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~ 228 (311)
T KOG1446|consen 151 EGLIFALANGSELIKLYDLRSFDKGPFTTFSIT--DNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGY 228 (311)
T ss_pred CCcEEEEecCCCeEEEEEecccCCCCceeEccC--CCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeec
Confidence 9999999988889999999863 222333221 133456899999999999999999999999999888876665433
Q ss_pred cCCccCceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 339 QNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 339 ~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
.....-+ ...+|+||++++.+|+.||+|.+|.+..
T Consensus 229 ~~~~~~~-~~a~ftPds~Fvl~gs~dg~i~vw~~~t 263 (311)
T KOG1446|consen 229 PNAGNLP-LSATFTPDSKFVLSGSDDGTIHVWNLET 263 (311)
T ss_pred cCCCCcc-eeEEECCCCcEEEEecCCCcEEEEEcCC
Confidence 2222223 4678999999999999999999999865
No 87
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6.7e-30 Score=204.29 Aligned_cols=257 Identities=19% Similarity=0.265 Sum_probs=200.7
Q ss_pred eccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCC---ceeeEeecCCcceEEEEECC--CCCEEEEeeCCCcEEE
Q 016974 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS---QKTHAIKLPCAWVMTCAFSP--TGQSVACGGLDSVCSI 135 (379)
Q Consensus 61 ~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~---~~~~~~~~~~~~v~~~~~s~--~g~~l~~~~~d~~i~i 135 (379)
+.-.+|++.|+.+...--|++|||||.|++|||+..... +.+.++++|.++|..++|.. .|.+||++++|+.+.|
T Consensus 5 ~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIi 84 (299)
T KOG1332|consen 5 TIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVII 84 (299)
T ss_pred ehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEE
Confidence 345679999999888778999999999999999998654 45678899999999999975 7999999999999999
Q ss_pred EEcCCCCCCCCCcceeeeecccccceEEEEEecCCC-ceEEEeeCCCeEEEeecCCC-eeEEEecCccccCCccCeEEEE
Q 016974 136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED-THLITSSGDQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVS 213 (379)
Q Consensus 136 w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~h~~~v~~~~ 213 (379)
|.-.+ +..........|...|++++|.|.+- ..|++++.||.|.+.+..+. ... .......|...|.+++
T Consensus 85 Wke~~-----g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~---t~ki~~aH~~GvnsVs 156 (299)
T KOG1332|consen 85 WKEEN-----GRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWT---TSKIVFAHEIGVNSVS 156 (299)
T ss_pred EecCC-----CchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCcc---chhhhhccccccceee
Confidence 98654 33444455678999999999999753 35889999999999988654 111 1122367999999999
Q ss_pred EeCCC-------------CcEEEEecCCCcEEEEEccCCc-cceEEEecccCCeeEEEEccCC----CEEEEeeCCCeEE
Q 016974 214 ISGSN-------------SRMFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPDG----NRFGTGSDDGTCR 275 (379)
Q Consensus 214 ~~~~~-------------~~~l~sg~~d~~i~vwd~~~~~-~~~~~~~~h~~~v~~v~~sp~g----~~l~s~s~D~~i~ 275 (379)
+.|.. .+.|++|+.|..|+||+..... ...+.+.+|.+.|..++|.|.- .+||++|+||++.
T Consensus 157 wapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~vi 236 (299)
T KOG1332|consen 157 WAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVI 236 (299)
T ss_pred ecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEE
Confidence 98752 1469999999999999987532 2334589999999999999963 4799999999999
Q ss_pred EEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCC
Q 016974 276 LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327 (379)
Q Consensus 276 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~ 327 (379)
||-.+.... .....-.+.-...+..+.||+.|++|+.++.|..|.+|.-.
T Consensus 237 Iwt~~~e~e--~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 237 IWTKDEEYE--PWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred EEEecCccC--cccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 998653211 11100011123358999999999999999999999999743
No 88
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=2.4e-29 Score=217.48 Aligned_cols=264 Identities=22% Similarity=0.301 Sum_probs=204.2
Q ss_pred cCCcceEEEEECCCC-CEEEEeeCCCcEEEEEcCCCCCC---CCCcceeeeecccccceEEEEEecCCCceEEEeeCCCe
Q 016974 107 LPCAWVMTCAFSPTG-QSVACGGLDSVCSIFNLNSPTDK---DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT 182 (379)
Q Consensus 107 ~~~~~v~~~~~s~~g-~~l~~~~~d~~i~iw~~~~~~~~---~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~ 182 (379)
.|.+.|..+.+-|+. ..+|+.+..+.+.|||....... .+.......+.||.+.-+.+.|++.....|++++.|++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 566778888888876 46777888999999998753211 11233344788999988889999988889999999999
Q ss_pred EEEeecCCCeeE--EEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccC-CccceEEEecccCCeeEEEEc
Q 016974 183 CVLWDITTGLRT--SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV-ASRAVRTFHGHEGDVNTVKFF 259 (379)
Q Consensus 183 i~~wd~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~-~~~~~~~~~~h~~~v~~v~~s 259 (379)
|.+||+...... .........+|...|..++|++.+..+|++++.|+.+.|||+|. ..++.....+|.+.|+|++|+
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn 281 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN 281 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence 999999754321 11111223689999999999999999999999999999999995 345667778999999999999
Q ss_pred c-CCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCC-EEEEEEecCcEEEEeCCCceEEE----
Q 016974 260 P-DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVL---- 333 (379)
Q Consensus 260 p-~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~-~l~sg~~dg~i~iwd~~~~~~~~---- 333 (379)
| ++..||+||.|++|++||+|+........ +.+...|.++.|||... .||+++.|+.+.+||+..-....
T Consensus 282 p~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~----e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~ed 357 (422)
T KOG0264|consen 282 PFNEFILATGSADKTVALWDLRNLNKPLHTF----EGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPED 357 (422)
T ss_pred CCCCceEEeccCCCcEEEeechhcccCceec----cCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhh
Confidence 9 67789999999999999999865422222 23445799999999765 77888899999999974321111
Q ss_pred ------ecccccCCccCceeEEEECCCCCe-EEEeeCCCcEEEEecCc
Q 016974 334 ------NLGSLQNSHEGRITCLGLSADGSA-LCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 334 ------~~~~~~~~h~~~v~~~~~s~d~~~-l~s~s~D~~i~vw~~~~ 374 (379)
.+...-.||...|..+.|+|...+ |+|++.|+.+.||+...
T Consensus 358 a~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 358 AEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred hccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 111122689999999999998754 66899999999999764
No 89
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=8.3e-29 Score=224.56 Aligned_cols=294 Identities=19% Similarity=0.296 Sum_probs=226.3
Q ss_pred ccccccccEEEEEeeC-----------CCCeEEEEcCCCcEEEEECCCCceeeEee------------------------
Q 016974 62 TLQGHAGKVYSLDWTS-----------ERNRIVSASQDGRLIVWNALTSQKTHAIK------------------------ 106 (379)
Q Consensus 62 ~l~gH~~~v~~~~~~~-----------~~~~l~s~s~D~~v~iwd~~~~~~~~~~~------------------------ 106 (379)
.+.-|...||.+.--| ...-+.|||.|++||+||+..+..-..++
T Consensus 364 s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~ 443 (1080)
T KOG1408|consen 364 SMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDA 443 (1080)
T ss_pred eeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhc
Confidence 3445777777776544 12358999999999999986421111100
Q ss_pred -------------cCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecC--CC
Q 016974 107 -------------LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD--ED 171 (379)
Q Consensus 107 -------------~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~ 171 (379)
.....+.+++.+|+|++||+|..-|+++||++..-. ..-.+..|...|.|+.|+.. +.
T Consensus 444 ~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~-------~~~~~eAHesEilcLeyS~p~~~~ 516 (1080)
T KOG1408|consen 444 SAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELE-------YTCFMEAHESEILCLEYSFPVLTN 516 (1080)
T ss_pred cCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhh-------hhhheecccceeEEEeecCchhhh
Confidence 011347899999999999999999999999997522 23346689999999999742 23
Q ss_pred ceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCC-CcEEEEecCCCcEEEEEccCCccceEEEecc-
Q 016974 172 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN-SRMFVSGSCDSTARLWDTRVASRAVRTFHGH- 249 (379)
Q Consensus 172 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h- 249 (379)
.+|++++.|+-|.++|+.....+. ....+|+..|+++.|...+ +..+++++.|+.|.+--.+... .-..+..|
T Consensus 517 kLLASasrdRlIHV~Dv~rny~l~----qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~-~g~~f~r~t 591 (1080)
T KOG1408|consen 517 KLLASASRDRLIHVYDVKRNYDLV----QTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKAS-SGRLFPRHT 591 (1080)
T ss_pred HhhhhccCCceEEEEecccccchh----hhhcccccceeEEEEeecCCceEEEeccCchhhheehhcccc-Cceeccccc
Confidence 578999999999999987653221 1126899999999997644 3567899999887543222111 11222222
Q ss_pred ----cCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEe
Q 016974 250 ----EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD 325 (379)
Q Consensus 250 ----~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd 325 (379)
...++.++..|..+++++++.|+.|+|||+..+++.+.|.+.+.+ .+....+..+|.|.|||+...|.++-++|
T Consensus 592 ~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~--eG~lIKv~lDPSgiY~atScsdktl~~~D 669 (1080)
T KOG1408|consen 592 QTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDH--EGDLIKVILDPSGIYLATSCSDKTLCFVD 669 (1080)
T ss_pred cccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccC--CCceEEEEECCCccEEEEeecCCceEEEE
Confidence 246889999999999999999999999999999999998775543 34567889999999999999999999999
Q ss_pred CCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecC
Q 016974 326 TLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 373 (379)
Q Consensus 326 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~ 373 (379)
..+++.+..+ .+|...|+.+.|.+|.+.|++.+.||.|.||.+-
T Consensus 670 f~sgEcvA~m----~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 670 FVSGECVAQM----TGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred eccchhhhhh----cCcchheeeeeecccchhheeecCCceEEEEECc
Confidence 9999887776 7899999999999999999999999999999864
No 90
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=8.1e-29 Score=217.04 Aligned_cols=272 Identities=21% Similarity=0.254 Sum_probs=197.8
Q ss_pred eeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCC
Q 016974 102 THAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181 (379)
Q Consensus 102 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~ 181 (379)
...++.+..-|.++++.|.|..+++||.|.+|++||+..-......+ ..........|.+++|++.++ .|++.+...
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~f--r~l~P~E~h~i~sl~ys~Tg~-~iLvvsg~a 236 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSF--RQLQPCETHQINSLQYSVTGD-QILVVSGSA 236 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhh--hccCcccccccceeeecCCCC-eEEEEecCc
Confidence 34556677789999999999999999999999999987421111001 111122344688999999875 566677778
Q ss_pred eEEEeecCCCeeEEEecC-------ccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEe-----cc
Q 016974 182 TCVLWDITTGLRTSVFGG-------EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-----GH 249 (379)
Q Consensus 182 ~i~~wd~~~~~~~~~~~~-------~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~-----~h 249 (379)
..+|+|-..........+ ....+|.+.+++.+|+|.+...|+|++.||++|+||+.........+. +.
T Consensus 237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK 316 (641)
T ss_pred ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence 889998643322222111 124699999999999999999999999999999999987655444443 23
Q ss_pred cCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCc
Q 016974 250 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA 329 (379)
Q Consensus 250 ~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~ 329 (379)
.-+++.++|+|||+.||+|+.||+|.+|+.+.......+.....+.....|+|++||++|++|++-+.|+++++||+...
T Consensus 317 Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 317 RVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF 396 (641)
T ss_pred ccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccc
Confidence 34688999999999999999999999999765433222222222223347999999999999999999999999999876
Q ss_pred eEEEec-ccccCCccCceeEEEECCCCCeEEEeeC------CCcEEEEecCceeec
Q 016974 330 KVVLNL-GSLQNSHEGRITCLGLSADGSALCTGSW------DTNLKIWAFGGYRRV 378 (379)
Q Consensus 330 ~~~~~~-~~~~~~h~~~v~~~~~s~d~~~l~s~s~------D~~i~vw~~~~~~~~ 378 (379)
+..... ..+... -+-+.++||||.++|++|.. -+++.+|+-..+.+|
T Consensus 397 kkpL~~~tgL~t~--~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v 450 (641)
T KOG0772|consen 397 KKPLNVRTGLPTP--FPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTV 450 (641)
T ss_pred ccchhhhcCCCcc--CCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeE
Confidence 644322 122121 23467899999999999764 467889987776654
No 91
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.97 E-value=3.8e-28 Score=199.24 Aligned_cols=292 Identities=22% Similarity=0.319 Sum_probs=216.9
Q ss_pred cccccccEEEEEeeC-CCCeEEEEcCCCcEEEEECCCCce----------eeE-----eecCCcceEEEEECC-CCCEEE
Q 016974 63 LQGHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALTSQK----------THA-----IKLPCAWVMTCAFSP-TGQSVA 125 (379)
Q Consensus 63 l~gH~~~v~~~~~~~-~~~~l~s~s~D~~v~iwd~~~~~~----------~~~-----~~~~~~~v~~~~~s~-~g~~l~ 125 (379)
...|.+.|+++.+.+ .|++++||+.||.+-+||++.... ... -..|...|.++.|-| |...+.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 345889999999887 689999999999999999865331 110 124556677888877 556888
Q ss_pred EeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecC--CCceEEEeeCCCeEEEeecCCCeeEEEecCcccc
Q 016974 126 CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD--EDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS 203 (379)
Q Consensus 126 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~ 203 (379)
+++.|.++++||.++-. ..-. ....+.|++-+++|- ...++++|..|-.|++-|+.+|.....+ .
T Consensus 119 ssSFDhtlKVWDtnTlQ-------~a~~-F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~L-----s 185 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQ-------EAVD-FKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTL-----S 185 (397)
T ss_pred cccccceEEEeecccce-------eeEE-eecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeee-----c
Confidence 99999999999987532 1111 123455666666663 2356888899999999999999888777 7
Q ss_pred CCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEE--------------EecccCCeeEEEEccCCCEEEEee
Q 016974 204 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT--------------FHGHEGDVNTVKFFPDGNRFGTGS 269 (379)
Q Consensus 204 ~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~--------------~~~h~~~v~~v~~sp~g~~l~s~s 269 (379)
+|...|.++.|+|...-.|++|+.||.||+||++...-+... -.+|.+.|+.++|..+|.++++++
T Consensus 186 GHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~g 265 (397)
T KOG4283|consen 186 GHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCG 265 (397)
T ss_pred cccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhcc
Confidence 999999999999999999999999999999999854322322 235778899999999999999999
Q ss_pred CCCeEEEEECCCCceeEEEeeccCCCC-CCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeE
Q 016974 270 DDGTCRLFDIRTGHQLQVYYQQHGENE-IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITC 348 (379)
Q Consensus 270 ~D~~i~iwd~~~~~~~~~~~~~~~~~~-~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~ 348 (379)
.|..+++|+..+|+....-+.+...+. ...-.-+. +.+...++--=.++.+.++.+..+..+..+ ..|-..|.|
T Consensus 266 td~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l----~~h~k~i~c 340 (397)
T KOG4283|consen 266 TDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRL----STHLKRINC 340 (397)
T ss_pred CccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEee----ecccceeeE
Confidence 999999999988864322221111111 01101122 222222222234588999998888887766 678889999
Q ss_pred EEECCCCCeEEEeeCCCcEEEEec
Q 016974 349 LGLSADGSALCTGSWDTNLKIWAF 372 (379)
Q Consensus 349 ~~~s~d~~~l~s~s~D~~i~vw~~ 372 (379)
.++-|+-+.+.+|+.|+.|..|..
T Consensus 341 ~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 341 AAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred EeecCchhhhhccccCCccccccc
Confidence 999999999999999999999976
No 92
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=1.2e-27 Score=197.53 Aligned_cols=272 Identities=22% Similarity=0.342 Sum_probs=206.6
Q ss_pred cccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCC
Q 016974 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDG 146 (379)
Q Consensus 67 ~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~ 146 (379)
.+.|.+|.|+|.++.|+.+|+||++++||.........+ .+..++..|+|.+ ...+++|+.|+.|+.+|++...
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~---- 86 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN---- 86 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCCc----
Confidence 346999999999999999999999999998876433333 3567899999998 5678899999999999998643
Q ss_pred CcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEec
Q 016974 147 NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS 226 (379)
Q Consensus 147 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~ 226 (379)
...+-.|...|.|+.+.+.. ..+++||+|++|++||.+.......+ .....|.+++.. ++.|+.|+
T Consensus 87 ----~~~igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~~~~~~~~------d~~kkVy~~~v~---g~~LvVg~ 152 (323)
T KOG1036|consen 87 ----EDQIGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRNKVVVGTF------DQGKKVYCMDVS---GNRLVVGT 152 (323)
T ss_pred ----ceeeccCCCceEEEEeeccC-CeEEEcccCccEEEEecccccccccc------ccCceEEEEecc---CCEEEEee
Confidence 22355799999999999754 57999999999999999864332222 223478887765 35788899
Q ss_pred CCCcEEEEEccCCccceEEE-ecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCc----eeEEEeeccCCC-----C
Q 016974 227 CDSTARLWDTRVASRAVRTF-HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH----QLQVYYQQHGEN-----E 296 (379)
Q Consensus 227 ~d~~i~vwd~~~~~~~~~~~-~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~----~~~~~~~~~~~~-----~ 296 (379)
.|..+.+||+++.....+.- ..-+-.+.||++-|++.-++++|-||.|-+=.+.... .-..| .-|... .
T Consensus 153 ~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaF-kCHr~~~~~~~~ 231 (323)
T KOG1036|consen 153 SDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAF-KCHRLSEKDTEI 231 (323)
T ss_pred cCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeE-EeeecccCCceE
Confidence 99999999999775544211 1223458999999988889999999998774443331 11112 222221 1
Q ss_pred CCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeC
Q 016974 297 IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 363 (379)
Q Consensus 297 ~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~ 363 (379)
.-+|++++|+|-.+.+|+|++||.|.+||..+.+.+..+ ......|..++|+.||..||.|+.
T Consensus 232 ~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~----~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 232 IYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQL----AKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EEEeceeEeccccceEEecCCCceEEEccCcchhhhhhc----cCCCCceEEEEeccCCCeEEEEec
Confidence 237999999999999999999999999999888877766 334567999999999999999875
No 93
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.6e-28 Score=209.84 Aligned_cols=252 Identities=23% Similarity=0.301 Sum_probs=203.0
Q ss_pred eeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCC
Q 016974 101 KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 180 (379)
Q Consensus 101 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 180 (379)
..+.+..|...|.-+.||++|+|||+++.|.+..||.+.... ...+.+++.||..+|.-+.|+||+ ++|++++.|
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~----~~kl~~tlvgh~~~V~yi~wSPDd-ryLlaCg~~ 290 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDV----HFKLKKTLVGHSQPVSYIMWSPDD-RYLLACGFD 290 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCc----ceeeeeeeecccCceEEEEECCCC-CeEEecCch
Confidence 345567788999999999999999999999999999987643 355678899999999999999985 789999999
Q ss_pred CeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEeccc-CCeeEEEEc
Q 016974 181 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE-GDVNTVKFF 259 (379)
Q Consensus 181 ~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~-~~v~~v~~s 259 (379)
..+.+||+.+|.....++ .++...+.+++|.| ++..|++|+.|+.|..||+.. ......++-. ..|.+++..
T Consensus 291 e~~~lwDv~tgd~~~~y~----~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDg--n~~~~W~gvr~~~v~dlait 363 (519)
T KOG0293|consen 291 EVLSLWDVDTGDLRHLYP----SGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDG--NILGNWEGVRDPKVHDLAIT 363 (519)
T ss_pred HheeeccCCcchhhhhcc----cCcCCCcceeEEcc-CCceeEecCCCCcEEEecCCc--chhhcccccccceeEEEEEc
Confidence 999999999987666553 34667899999998 677799999999999999863 3344444433 459999999
Q ss_pred cCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEeccccc
Q 016974 260 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ 339 (379)
Q Consensus 260 p~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~ 339 (379)
+||+++++.+.|..|++++..+...+..... ..+|++++.|.+|+++++.-.+..+++||+...+.+...
T Consensus 364 ~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise------~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY---- 433 (519)
T KOG0293|consen 364 YDGKYVLLVTVDKKIRLYNREARVDRGLISE------EQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKY---- 433 (519)
T ss_pred CCCcEEEEEecccceeeechhhhhhhccccc------cCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHh----
Confidence 9999999999999999999876544332221 235999999999999999999999999999876666555
Q ss_pred CCccC--ceeEEEEC-CCCCeEEEeeCCCcEEEEecCc
Q 016974 340 NSHEG--RITCLGLS-ADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 340 ~~h~~--~v~~~~~s-~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
.+|.. .|..-+|. .+..+++|||+|+.|+||.-..
T Consensus 434 ~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~s 471 (519)
T KOG0293|consen 434 FGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRIS 471 (519)
T ss_pred hcccccceEEEeccCCCCcceEEecCCCceEEEEEccC
Confidence 34433 34444564 4668999999999999998543
No 94
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=9.9e-27 Score=184.31 Aligned_cols=255 Identities=22% Similarity=0.350 Sum_probs=193.9
Q ss_pred eeEeeccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCce-----eeEeecCCcceEEEEECCC----CCEEEEe
Q 016974 57 LVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQK-----THAIKLPCAWVMTCAFSPT----GQSVACG 127 (379)
Q Consensus 57 ~~~~~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~-----~~~~~~~~~~v~~~~~s~~----g~~l~~~ 127 (379)
.+.++.-+.|.+.|+|.+|+|+|.+|++||.|++|++.-.+...+ ...+.-|.+.|..++|-.+ |..|+++
T Consensus 79 ~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ 158 (350)
T KOG0641|consen 79 SVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASA 158 (350)
T ss_pred eEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEec
Confidence 344556678999999999999999999999999999975543221 1234567788999999543 4566666
Q ss_pred eC-CCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccC--
Q 016974 128 GL-DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSG-- 204 (379)
Q Consensus 128 ~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~-- 204 (379)
+. |..|.+-|-... ...+.+.||++.|.++.-. ++-.+++|+.|.+|++||++-..++..+...+..+
T Consensus 159 gagdc~iy~tdc~~g-------~~~~a~sghtghilalysw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gl 229 (350)
T KOG0641|consen 159 GAGDCKIYITDCGRG-------QGFHALSGHTGHILALYSW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGL 229 (350)
T ss_pred CCCcceEEEeecCCC-------CcceeecCCcccEEEEEEe--cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCc
Confidence 54 444444443221 1345678999999876433 34679999999999999999888877776554322
Q ss_pred CccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCc-
Q 016974 205 HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH- 283 (379)
Q Consensus 205 h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~- 283 (379)
.+..|.+++..| .++++++|..|....+||++.. +.++.+..|...|.||.|+|...|++++|.|..|++-|++..-
T Consensus 230 essavaav~vdp-sgrll~sg~~dssc~lydirg~-r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla 307 (350)
T KOG0641|consen 230 ESSAVAAVAVDP-SGRLLASGHADSSCMLYDIRGG-RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLA 307 (350)
T ss_pred ccceeEEEEECC-CcceeeeccCCCceEEEEeeCC-ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchh
Confidence 235688888887 6789999999999999999954 7889999999999999999999999999999999999987421
Q ss_pred -eeE-EEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeC
Q 016974 284 -QLQ-VYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326 (379)
Q Consensus 284 -~~~-~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~ 326 (379)
++. ....+| ...+..+.|.|+.--+++.+.|.++.+|-+
T Consensus 308 ~el~~~vv~eh----kdk~i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 308 HELPIMVVAEH----KDKAIQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred hcCceEEEEec----cCceEEEEecCccceeeeccCcceEEEecc
Confidence 111 122222 234677899999988999999999999964
No 95
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=1.4e-28 Score=204.34 Aligned_cols=253 Identities=23% Similarity=0.311 Sum_probs=201.2
Q ss_pred cceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCC-CCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeec
Q 016974 110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTD-KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI 188 (379)
Q Consensus 110 ~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~ 188 (379)
..+-+..|+|||++|++|+.||.|.+||..++.- ++-+......+.-+..+|.|+.|+.+. ..|++|+.||.|++|.+
T Consensus 214 Sh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDs-EMlAsGsqDGkIKvWri 292 (508)
T KOG0275|consen 214 SHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDS-EMLASGSQDGKIKVWRI 292 (508)
T ss_pred cchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccH-HHhhccCcCCcEEEEEE
Confidence 3466788999999999999999999999876432 122222334456688999999999874 68999999999999999
Q ss_pred CCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEe
Q 016974 189 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG 268 (379)
Q Consensus 189 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~ 268 (379)
++|.++..+ ..+|+..|+++.|+. ++..+++++.|.++|+--++.+ +.++.++||.+.|+.+.|.+||.+++++
T Consensus 293 ~tG~ClRrF----drAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSG-K~LKEfrGHsSyvn~a~ft~dG~~iisa 366 (508)
T KOG0275|consen 293 ETGQCLRRF----DRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSG-KCLKEFRGHSSYVNEATFTDDGHHIISA 366 (508)
T ss_pred ecchHHHHh----hhhhccCeeEEEEcc-CcchhhcccccceEEEeccccc-hhHHHhcCccccccceEEcCCCCeEEEe
Confidence 999887655 368999999999997 4556789999999999998855 6788899999999999999999999999
Q ss_pred eCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccC-CCEEEEEEecCcEEEEeCCCceEEEecccccCCccCcee
Q 016974 269 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRIT 347 (379)
Q Consensus 269 s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~-g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~ 347 (379)
|.||+|++|+.++.+++.+|.... ...+|+.+-.-|. -..++.+....+|+|-+. .+..+..+..-... .+...
T Consensus 367 SsDgtvkvW~~KtteC~~Tfk~~~---~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkRE-gGdFi 441 (508)
T KOG0275|consen 367 SSDGTVKVWHGKTTECLSTFKPLG---TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKRE-GGDFI 441 (508)
T ss_pred cCCccEEEecCcchhhhhhccCCC---CcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCcc-CCceE
Confidence 999999999999999888775432 2345777766564 346677777789999986 45666655332222 23344
Q ss_pred EEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 348 CLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 348 ~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
+.+.||-|.++.+.+.|+.++.|.+-.
T Consensus 442 ~~~lSpkGewiYcigED~vlYCF~~~s 468 (508)
T KOG0275|consen 442 NAILSPKGEWIYCIGEDGVLYCFSVLS 468 (508)
T ss_pred EEEecCCCcEEEEEccCcEEEEEEeec
Confidence 567899999999999999999998644
No 96
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.2e-28 Score=225.47 Aligned_cols=289 Identities=18% Similarity=0.267 Sum_probs=217.9
Q ss_pred ccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCce----eeEeecCC---cceEEEEECC-CCCEEEEeeCCCcE
Q 016974 62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQK----THAIKLPC---AWVMTCAFSP-TGQSVACGGLDSVC 133 (379)
Q Consensus 62 ~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~----~~~~~~~~---~~v~~~~~s~-~g~~l~~~~~d~~i 133 (379)
.+++| ..+|..+++-..|+.++.. .++|+....... .+..+... .....++|+. +.++||+++..|.|
T Consensus 37 ~~k~~---~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i 112 (839)
T KOG0269|consen 37 KLKAK---ANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVI 112 (839)
T ss_pred ecccc---cceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcE
Confidence 35554 4456667887777776654 577776543221 11111111 1223455663 45799999999999
Q ss_pred EEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEE
Q 016974 134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 213 (379)
Q Consensus 134 ~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~ 213 (379)
.+||++... ..+....+.-|.-.+.++.|++...++|++||.||+|++||++.......+ .+....|..+.
T Consensus 113 ~vWdlnk~~----rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~-----~~nSESiRDV~ 183 (839)
T KOG0269|consen 113 SVWDLNKSI----RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTF-----RSNSESIRDVK 183 (839)
T ss_pred EEEecCccc----cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccc-----cccchhhhcee
Confidence 999998532 122334567899999999999999999999999999999999876544444 45678899999
Q ss_pred EeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccC
Q 016974 214 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG 293 (379)
Q Consensus 214 ~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~ 293 (379)
|+|..+..|+++...|.+++||+|.+.+....+.+|.++|.|+.|+|++.+|||||.|+.|+|||+.+.+.-... -
T Consensus 184 fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~----t 259 (839)
T KOG0269|consen 184 FSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKH----T 259 (839)
T ss_pred eccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCcccee----E
Confidence 999999999999999999999999988888889999999999999999999999999999999999865432211 1
Q ss_pred CCCCCCeEEEEEccCCCEE-EEEE--ecCcEEEEeCCCceEEEecccccCCccCceeEEEECC-CCCeEEEeeCCCcEEE
Q 016974 294 ENEIPHVTSIAFSISGRLL-FAGY--SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA-DGSALCTGSWDTNLKI 369 (379)
Q Consensus 294 ~~~~~~v~~~~fs~~g~~l-~sg~--~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~-d~~~l~s~s~D~~i~v 369 (379)
.+...+|.++.|-|..++. |+++ .|-.|+|||+...-+... ++ ..|...++.++|.. |-..|.++|.|++|..
T Consensus 260 InTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~--t~-~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 260 INTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYA--TF-LEHTDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred EeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccce--ee-eccCccccceeccCCCceeeEeecCccHHHH
Confidence 2235679999999988764 4443 567899999876543322 12 57999999999954 6678899999999864
Q ss_pred E
Q 016974 370 W 370 (379)
Q Consensus 370 w 370 (379)
-
T Consensus 337 h 337 (839)
T KOG0269|consen 337 H 337 (839)
T ss_pred h
Confidence 3
No 97
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=2e-27 Score=192.52 Aligned_cols=258 Identities=20% Similarity=0.312 Sum_probs=195.7
Q ss_pred eEeeccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEee-----CCCc
Q 016974 58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGG-----LDSV 132 (379)
Q Consensus 58 ~~~~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-----~d~~ 132 (379)
...-++.||++.|+|++.+-+.++++|||.|.++++||+.+|+++.+++.. ..|..+.|+++|++++... ..+.
T Consensus 43 erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~-~~Vk~~~F~~~gn~~l~~tD~~mg~~~~ 121 (327)
T KOG0643|consen 43 ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTN-SPVKRVDFSFGGNLILASTDKQMGYTCF 121 (327)
T ss_pred ceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecC-CeeEEEeeccCCcEEEEEehhhcCcceE
Confidence 445689999999999999999999999999999999999999999998876 4599999999999877754 4567
Q ss_pred EEEEEcCCCCC-CCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEE
Q 016974 133 CSIFNLNSPTD-KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLS 211 (379)
Q Consensus 133 i~iw~~~~~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~ 211 (379)
|.++|++.... ...+.|.. .+..+...++.+-|.|-+ ..|++|..||.|.+||++++.....- ...|...|..
T Consensus 122 v~~fdi~~~~~~~~s~ep~~-kI~t~~skit~a~Wg~l~-~~ii~Ghe~G~is~~da~~g~~~v~s----~~~h~~~Ind 195 (327)
T KOG0643|consen 122 VSVFDIRDDSSDIDSEEPYL-KIPTPDSKITSALWGPLG-ETIIAGHEDGSISIYDARTGKELVDS----DEEHSSKIND 195 (327)
T ss_pred EEEEEccCChhhhcccCceE-EecCCccceeeeeecccC-CEEEEecCCCcEEEEEcccCceeeec----hhhhcccccc
Confidence 89999985432 22233333 344566788889999975 68999999999999999998544322 2568889999
Q ss_pred EEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeC-CCe-EEEEECCCCceeEEEe
Q 016974 212 VSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DGT-CRLFDIRTGHQLQVYY 289 (379)
Q Consensus 212 ~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~-D~~-i~iwd~~~~~~~~~~~ 289 (379)
+.+++ +..+|++++.|.+-++||.+.. ..++++. -..+|++++++|..+.++.|+. +-. |.-=+.+.|+--..|+
T Consensus 196 ~q~s~-d~T~FiT~s~Dttakl~D~~tl-~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFy 272 (327)
T KOG0643|consen 196 LQFSR-DRTYFITGSKDTTAKLVDVRTL-EVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFY 272 (327)
T ss_pred ccccC-CcceEEecccCccceeeeccce-eeEEEee-ecccccceecccccceEEecCCceeeeeeeecccccchhhhHH
Confidence 99997 6779999999999999999865 4566665 3578999999997777766653 221 2222222221100110
Q ss_pred e-------ccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEe
Q 016974 290 Q-------QHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD 325 (379)
Q Consensus 290 ~-------~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd 325 (379)
. ..-..|-++|++++|+|+|+..++|++||.|++.-
T Consensus 273 h~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~ 315 (327)
T KOG0643|consen 273 HLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHH 315 (327)
T ss_pred HHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEE
Confidence 0 01123567899999999999999999999988863
No 98
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.96 E-value=9.6e-28 Score=209.76 Aligned_cols=282 Identities=18% Similarity=0.367 Sum_probs=223.2
Q ss_pred cccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCc---eeeEee--cCCcceEEEEECCCCCEEEEeeCCCcEEEEEcC
Q 016974 65 GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ---KTHAIK--LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLN 139 (379)
Q Consensus 65 gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~---~~~~~~--~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~ 139 (379)
.|..-|.++.++...++++||+.- -|+|||+.... .+..+. .....+.+|.+.|||+.|++||.-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGkg-cVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGKG-CVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCCC-eEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 588889999999999999999865 59999986432 122222 134678999999999999999999999999998
Q ss_pred CCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCC
Q 016974 140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 219 (379)
Q Consensus 140 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 219 (379)
.+... +...+..-.-..++++.+||. ++.+++..||.|.+||+.+...+..+ .+|.+.+.++.+++ ++
T Consensus 496 apTpr-----ikaeltssapaCyALa~spDa-kvcFsccsdGnI~vwDLhnq~~Vrqf-----qGhtDGascIdis~-dG 563 (705)
T KOG0639|consen 496 APTPR-----IKAELTSSAPACYALAISPDA-KVCFSCCSDGNIAVWDLHNQTLVRQF-----QGHTDGASCIDISK-DG 563 (705)
T ss_pred CCCcc-----hhhhcCCcchhhhhhhcCCcc-ceeeeeccCCcEEEEEcccceeeecc-----cCCCCCceeEEecC-CC
Confidence 76532 111122223456778899975 67888999999999999988777666 68999999999997 56
Q ss_pred cEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCC
Q 016974 220 RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299 (379)
Q Consensus 220 ~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 299 (379)
..|-||+.|.+||.||++..+++.+ ......|.++..+|++.+++.|-..+.+.|-.....+..+.. . +...
T Consensus 564 tklWTGGlDntvRcWDlregrqlqq--hdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlh--l----heSc 635 (705)
T KOG0639|consen 564 TKLWTGGLDNTVRCWDLREGRQLQQ--HDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLH--L----HESC 635 (705)
T ss_pred ceeecCCCccceeehhhhhhhhhhh--hhhhhhheecccCCCccceeeecccCcEEEEecCCccceeec--c----cccE
Confidence 6678999999999999997654321 123467999999999999999999999999887655433221 1 2346
Q ss_pred eEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEec
Q 016974 300 VTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 372 (379)
Q Consensus 300 v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~ 372 (379)
|.++.|++.|+++++-+.|.-+..|..--+..+.. ..-..+|.|+.+|.|.++|++||.|+...||.+
T Consensus 636 VLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFq-----skE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 636 VLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-----SKESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred EEEEEecccCceeeecCchhhhhhccCccccceee-----ccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 99999999999999999999999998766655443 335678999999999999999999999998875
No 99
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=7.9e-29 Score=208.46 Aligned_cols=251 Identities=22% Similarity=0.360 Sum_probs=199.3
Q ss_pred ceeEeeccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEE
Q 016974 56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI 135 (379)
Q Consensus 56 ~~~~~~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~i 135 (379)
...|.++|+.|.+.|..+++.. ..++|+++|.+|+.|-+.- ...+++-.. ..+..+.-+..+..++++|.+ |.|
T Consensus 98 qR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg~-s~~~gIdh~~~~~~FaTcGe~--i~I 171 (433)
T KOG0268|consen 98 QRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILGK-SVYLGIDHHRKNSVFATCGEQ--IDI 171 (433)
T ss_pred hhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeecc-ccccccccccccccccccCce--eee
Confidence 3457789999999999999976 6789999999999998764 344444332 335555555667788888765 889
Q ss_pred EEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEe
Q 016974 136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS 215 (379)
Q Consensus 136 w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 215 (379)
||..-.. |+ ..+.--.+.|.++.|+|.....|++++.|++|.|||++++..+.... -......++|+
T Consensus 172 WD~~R~~------Pv-~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi------~~mRTN~Iswn 238 (433)
T KOG0268|consen 172 WDEQRDN------PV-SSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI------LTMRTNTICWN 238 (433)
T ss_pred cccccCC------cc-ceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee------eeccccceecC
Confidence 9976322 22 22333356789999999888889999999999999999876554432 12334678899
Q ss_pred CCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCC
Q 016974 216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN 295 (379)
Q Consensus 216 ~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~ 295 (379)
| ..-.|.+|+.|..+..+|++....++....+|.++|.+|+|||.|+-|++||.|.+|+||..+.++....+...
T Consensus 239 P-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk---- 313 (433)
T KOG0268|consen 239 P-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK---- 313 (433)
T ss_pred c-cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh----
Confidence 8 77788999999999999999998999999999999999999999999999999999999999887655544322
Q ss_pred CCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCce
Q 016974 296 EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK 330 (379)
Q Consensus 296 ~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~ 330 (379)
....|.|+.||.|.+||++|++|+.|++|.....+
T Consensus 314 RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 314 RMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred hhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence 12359999999999999999999999999864443
No 100
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=5.7e-28 Score=199.56 Aligned_cols=225 Identities=25% Similarity=0.382 Sum_probs=182.8
Q ss_pred eEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCC------C-----CCCCCCcceeeeecccccceEEEEEecCCC
Q 016974 103 HAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS------P-----TDKDGNLPVSRMLSGHKGYVSCCQYVPDED 171 (379)
Q Consensus 103 ~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~------~-----~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 171 (379)
..+..|.....+.+|+|||.++|+||.|..|+|.|+.. + .......|+++++..|.+.|.++.|+|..
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre- 184 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE- 184 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh-
Confidence 45667888899999999999999999999999999871 1 11223347899999999999999999974
Q ss_pred ceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceE--EEecc
Q 016974 172 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR--TFHGH 249 (379)
Q Consensus 172 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~--~~~~h 249 (379)
..|++|+.|++|+++|+........+. . ......|.++.|+| .+.+++.|.....+|+||+.+...-+. .-..|
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K-~--~qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qh 260 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFK-V--FQDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQH 260 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHH-H--hhccceeeeEeecC-CCceEEEecCCCceeEEeccceeEeeecCccccc
Confidence 689999999999999986432111110 0 12345789999998 567899999999999999986532111 12468
Q ss_pred cCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCc
Q 016974 250 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA 329 (379)
Q Consensus 250 ~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~ 329 (379)
.+.|++|.+++.|++.++||.||.|+|||--+++++..+...|+. ..|.+..|..+|+||++.+.|..+++|.+.++
T Consensus 261 t~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~g---sevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~ 337 (430)
T KOG0640|consen 261 TGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGG---SEVCSAVFTKNGKYILSSGKDSTVKLWEISTG 337 (430)
T ss_pred ccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCC---ceeeeEEEccCCeEEeecCCcceeeeeeecCC
Confidence 999999999999999999999999999998888888777665543 46899999999999999999999999999999
Q ss_pred eEEEec
Q 016974 330 KVVLNL 335 (379)
Q Consensus 330 ~~~~~~ 335 (379)
+.+...
T Consensus 338 R~l~~Y 343 (430)
T KOG0640|consen 338 RMLKEY 343 (430)
T ss_pred ceEEEE
Confidence 887665
No 101
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=7e-28 Score=192.75 Aligned_cols=255 Identities=18% Similarity=0.276 Sum_probs=194.5
Q ss_pred CCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEe-cCCCceEEEeeCCCeEEEe
Q 016974 108 PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV-PDEDTHLITSSGDQTCVLW 186 (379)
Q Consensus 108 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~l~s~~~d~~i~~w 186 (379)
|..-|..+.....|+.||+++.|++|+|+..++.. +......+.||.++|..++|. |.-+.+|++++.||.|.||
T Consensus 10 H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~----~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 10 HEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNG----QSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCC----CceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 33444455556679999999999999999998643 234567899999999999995 5556789999999999999
Q ss_pred ecCCCeeEEEecCccccCCccCeEEEEEeCCC-CcEEEEecCCCcEEEEEccCCc--cceEEEecccCCeeEEEEccC--
Q 016974 187 DITTGLRTSVFGGEFQSGHTADVLSVSISGSN-SRMFVSGSCDSTARLWDTRVAS--RAVRTFHGHEGDVNTVKFFPD-- 261 (379)
Q Consensus 187 d~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~sg~~d~~i~vwd~~~~~--~~~~~~~~h~~~v~~v~~sp~-- 261 (379)
.-.++.-.+... ...|...|+++++.|.. +-+|++++.||.|.|.+.+... ...+...+|+-.|++++|.|.
T Consensus 86 ke~~g~w~k~~e---~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~ 162 (299)
T KOG1332|consen 86 KEENGRWTKAYE---HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASA 162 (299)
T ss_pred ecCCCchhhhhh---hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCC
Confidence 988774332221 25789999999998754 4577889999999999887542 233456789999999999986
Q ss_pred -C-----------CEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCC----CEEEEEEecCcEEEEe
Q 016974 262 -G-----------NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG----RLLFAGYSNGDCYVWD 325 (379)
Q Consensus 262 -g-----------~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g----~~l~sg~~dg~i~iwd 325 (379)
| +.|++|+.|..|+||+...+.-.. ....+.|...|..+++.|.- .+||+++.||++.||.
T Consensus 163 ~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~---e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt 239 (299)
T KOG1332|consen 163 PGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKL---ERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWT 239 (299)
T ss_pred CccccccCcccccceeeccCCccceeeeecCCcchhh---hhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEE
Confidence 5 569999999999999987652111 11123456689999999975 4899999999999997
Q ss_pred CCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecC
Q 016974 326 TLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 373 (379)
Q Consensus 326 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~ 373 (379)
........+ .++.......++.+.||+.|++|+.++.|+.|++|.-+
T Consensus 240 ~~~e~e~wk-~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 240 KDEEYEPWK-KTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ecCccCccc-ccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 652211111 11123355689999999999999999999999999743
No 102
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.3e-27 Score=211.76 Aligned_cols=242 Identities=17% Similarity=0.317 Sum_probs=204.5
Q ss_pred ccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeec-CCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCC
Q 016974 66 HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKL-PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDK 144 (379)
Q Consensus 66 H~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~ 144 (379)
+...|+++.|+++|++|+.|..+|.|.|||..+.+.+..+.. |...|.+++|. +..+.+|+.|+.|..+|++.....
T Consensus 216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~ 293 (484)
T KOG0305|consen 216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHV 293 (484)
T ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhh
Confidence 378899999999999999999999999999999999999988 88999999999 778999999999999999864321
Q ss_pred CCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEE
Q 016974 145 DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS 224 (379)
Q Consensus 145 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 224 (379)
...+.+|...|..+.|++++ .+|++|+.|+.+.|||.........+ ..|.+.|.+++|+|-...+||+
T Consensus 294 ------~~~~~~H~qeVCgLkws~d~-~~lASGgnDN~~~Iwd~~~~~p~~~~-----~~H~aAVKA~awcP~q~~lLAs 361 (484)
T KOG0305|consen 294 ------VSTLQGHRQEVCGLKWSPDG-NQLASGGNDNVVFIWDGLSPEPKFTF-----TEHTAAVKALAWCPWQSGLLAT 361 (484)
T ss_pred ------hhhhhcccceeeeeEECCCC-CeeccCCCccceEeccCCCccccEEE-----eccceeeeEeeeCCCccCceEE
Confidence 22478899999999999985 68999999999999999655444444 6799999999999988899999
Q ss_pred ec--CCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEee--CCCeEEEEECCCCceeEEEeeccCCCCCCCe
Q 016974 225 GS--CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS--DDGTCRLFDIRTGHQLQVYYQQHGENEIPHV 300 (379)
Q Consensus 225 g~--~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s--~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v 300 (379)
|+ .|+.|++||+... ..+.... -.+.|..|.|++..+-|+++. .++.|.||+..+.+.+..+.. |...|
T Consensus 362 GGGs~D~~i~fwn~~~g-~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~g-----H~~RV 434 (484)
T KOG0305|consen 362 GGGSADRCIKFWNTNTG-ARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLG-----HTSRV 434 (484)
T ss_pred cCCCcccEEEEEEcCCC-cEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecC-----Cccee
Confidence 64 7999999999855 4444443 356799999999987777663 567899999988666655432 34569
Q ss_pred EEEEEccCCCEEEEEEecCcEEEEeCCC
Q 016974 301 TSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (379)
Q Consensus 301 ~~~~fs~~g~~l~sg~~dg~i~iwd~~~ 328 (379)
..+++||||..|++|+.|.++++|++..
T Consensus 435 l~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 435 LYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred EEEEECCCCCEEEEecccCcEEeccccC
Confidence 9999999999999999999999999755
No 103
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=9.5e-28 Score=205.09 Aligned_cols=244 Identities=23% Similarity=0.351 Sum_probs=194.4
Q ss_pred EeeccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEc
Q 016974 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNL 138 (379)
Q Consensus 59 ~~~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~ 138 (379)
...+|.|-.++|++++|.++++++++++.|+++++|++...+..+++.+|...|.++.|......+++|+.|.++++||+
T Consensus 211 ~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl 290 (459)
T KOG0288|consen 211 LISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDL 290 (459)
T ss_pred hhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhh
Confidence 34578888899999999999999999999999999999999999999999999999999887777999999999999999
Q ss_pred CCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCC
Q 016974 139 NSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN 218 (379)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 218 (379)
.... +.+++.. ...+..+... ...++||..|++|++||++++.+.... ..+ +.|.++..+. +
T Consensus 291 ~k~~-------C~kt~l~-~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv-----~~g-g~vtSl~ls~-~ 352 (459)
T KOG0288|consen 291 QKAY-------CSKTVLP-GSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSV-----PLG-GRVTSLDLSM-D 352 (459)
T ss_pred hhhh-------eeccccc-cccccceEec---ceeeeecccccceEEEeccCCceeeEe-----ecC-cceeeEeecc-C
Confidence 8532 2221111 1122333332 245889999999999999988766554 223 4799999987 5
Q ss_pred CcEEEEecCCCcEEEEEccCCccceEEEecc----cCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCC
Q 016974 219 SRMFVSGSCDSTARLWDTRVASRAVRTFHGH----EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE 294 (379)
Q Consensus 219 ~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h----~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~ 294 (379)
+.-+.+++.|.++.+.|+++. .....+.+. ....+.+.|||++.|+++||.||.|+||++.+++........+.
T Consensus 353 g~~lLsssRDdtl~viDlRt~-eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s- 430 (459)
T KOG0288|consen 353 GLELLSSSRDDTLKVIDLRTK-EIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTS- 430 (459)
T ss_pred CeEEeeecCCCceeeeecccc-cEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCC-
Confidence 666777899999999999865 333333321 12378999999999999999999999999999887665543322
Q ss_pred CCCCCeEEEEEccCCCEEEEEEecCcEEEE
Q 016974 295 NEIPHVTSIAFSISGRLLFAGYSNGDCYVW 324 (379)
Q Consensus 295 ~~~~~v~~~~fs~~g~~l~sg~~dg~i~iw 324 (379)
.+.|++++|+|.|.++++++.++.+.+|
T Consensus 431 --~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 431 --NAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred --CcceEEEEEcCCCchhhcccCCcceEec
Confidence 2369999999999999999999999999
No 104
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.96 E-value=2.1e-26 Score=208.46 Aligned_cols=314 Identities=17% Similarity=0.249 Sum_probs=220.6
Q ss_pred CccCCcceeEeeccccccccEEEEEeeCCCC---eEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEE
Q 016974 50 VSFGPTDLVCCRTLQGHAGKVYSLDWTSERN---RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVAC 126 (379)
Q Consensus 50 ~~~~~~~~~~~~~l~gH~~~v~~~~~~~~~~---~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 126 (379)
.-+.|.......++.||...|+|+.|-|..+ .++||+.|+.|++|.+......+..........+.++...-....+
T Consensus 37 av~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~~~~~ 116 (764)
T KOG1063|consen 37 AVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARSSVMTC 116 (764)
T ss_pred EEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeeeeEEEe
Confidence 3455666666778999999999999999877 7999999999999998844443333333234455556655555555
Q ss_pred eeCCCcEEEEEcCCCCCCCCCcceeeeecccccc--eEEEEEecCCCce-EEEeeCCCeEEEeecCCCeeEEEecCcccc
Q 016974 127 GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGY--VSCCQYVPDEDTH-LITSSGDQTCVLWDITTGLRTSVFGGEFQS 203 (379)
Q Consensus 127 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~~-l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~ 203 (379)
...|+++.+|+.+++. .-+...+.--.+. -.|+++.|+.+.+ ++.|+.+..|.++.-.......... ..
T Consensus 117 ~~ad~~v~vw~~~~~e-----~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~e---l~ 188 (764)
T KOG1063|consen 117 KAADGTVSVWDKQQDE-----VFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAE---LE 188 (764)
T ss_pred eccCceEEEeecCCCc-----eeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEE---ee
Confidence 6889999999984321 1111112111111 2355666644444 5667778888888655442222221 26
Q ss_pred CCccCeEEEEEeCCCC--cEEEEecCCCcEEEEEccCCc--------------------cce----------EEEecccC
Q 016974 204 GHTADVLSVSISGSNS--RMFVSGSCDSTARLWDTRVAS--------------------RAV----------RTFHGHEG 251 (379)
Q Consensus 204 ~h~~~v~~~~~~~~~~--~~l~sg~~d~~i~vwd~~~~~--------------------~~~----------~~~~~h~~ 251 (379)
||.+.|.+++|....+ -+++|+|+|..||||.+.... ... ..+.||+.
T Consensus 189 GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeD 268 (764)
T KOG1063|consen 189 GHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHED 268 (764)
T ss_pred ccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCccc
Confidence 9999999999876443 578999999999999865322 011 12359999
Q ss_pred CeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeE---EEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCC
Q 016974 252 DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ---VYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (379)
Q Consensus 252 ~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~---~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~ 328 (379)
.|+++.|+|.+..|+++|.|.++.+|...+..-+- ....+.+ .....-...-|+|++.++++-+..|..++|....
T Consensus 269 WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~g-g~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d 347 (764)
T KOG1063|consen 269 WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVG-GSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKD 347 (764)
T ss_pred ceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeeccc-ccccceeeEEEcCCCCEEEEecccCcEEEEeccC
Confidence 99999999999999999999999999876542221 1122222 1233467889999999999999999999998332
Q ss_pred ceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecC
Q 016974 329 AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 373 (379)
Q Consensus 329 ~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~ 373 (379)
. ...+.....++|.+.|..++|+|.|+||.|+|.|+|-|||.-.
T Consensus 348 ~-~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~w 391 (764)
T KOG1063|consen 348 K-TFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW 391 (764)
T ss_pred c-cceeeccccccccccceeeeecCCCCEEEEeccccceeeeccc
Confidence 2 2223333448999999999999999999999999999999765
No 105
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=8.8e-27 Score=188.19 Aligned_cols=245 Identities=20% Similarity=0.284 Sum_probs=194.7
Q ss_pred EeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeE
Q 016974 104 AIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183 (379)
Q Consensus 104 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i 183 (379)
.+..|...+.+++|+.+|..|++++.|+++++|++... .........+|.+.|-.+.|.|..+..+++++.|++|
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~-----r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~i 89 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD-----RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTI 89 (313)
T ss_pred HhhhhhhcceEEEEcccCceeeecccCCceEEEEecch-----hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceE
Confidence 34566778999999999999999999999999999753 2223345678999999999999888899999999999
Q ss_pred EEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCC
Q 016974 184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN 263 (379)
Q Consensus 184 ~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~ 263 (379)
++||++++.+..... ....-.-+.|+| ++.+++.++.|..|.+.|.++.. .....+ ....++.+.|+.+++
T Consensus 90 r~wd~r~~k~~~~i~------~~~eni~i~wsp-~g~~~~~~~kdD~it~id~r~~~-~~~~~~-~~~e~ne~~w~~~nd 160 (313)
T KOG1407|consen 90 RIWDIRSGKCTARIE------TKGENINITWSP-DGEYIAVGNKDDRITFIDARTYK-IVNEEQ-FKFEVNEISWNNSND 160 (313)
T ss_pred EEEEeccCcEEEEee------ccCcceEEEEcC-CCCEEEEecCcccEEEEEecccc-eeehhc-ccceeeeeeecCCCC
Confidence 999999988876653 223345567887 56788899999999999998653 222222 234578899998888
Q ss_pred EEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCcc
Q 016974 264 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHE 343 (379)
Q Consensus 264 ~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~ 343 (379)
+++.-..-|+|.|-.....+++..+.. |.....|+.|+|+|+|+|+|+.|..+.+||+...-.+..+ ..+.
T Consensus 161 ~Fflt~GlG~v~ILsypsLkpv~si~A-----H~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i----sRld 231 (313)
T KOG1407|consen 161 LFFLTNGLGCVEILSYPSLKPVQSIKA-----HPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCI----SRLD 231 (313)
T ss_pred EEEEecCCceEEEEecccccccccccc-----CCcceEEEEECCCCceEeeccccceeeccChhHhhhheee----cccc
Confidence 887777779999998887777766533 2345889999999999999999999999998654444444 4577
Q ss_pred CceeEEEECCCCCeEEEeeCCCcEEEEe
Q 016974 344 GRITCLGLSADGSALCTGSWDTNLKIWA 371 (379)
Q Consensus 344 ~~v~~~~~s~d~~~l~s~s~D~~i~vw~ 371 (379)
=+|..|.||.||++||+||+|..|-|=.
T Consensus 232 wpVRTlSFS~dg~~lASaSEDh~IDIA~ 259 (313)
T KOG1407|consen 232 WPVRTLSFSHDGRMLASASEDHFIDIAE 259 (313)
T ss_pred CceEEEEeccCcceeeccCccceEEeEe
Confidence 7999999999999999999999885533
No 106
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=8.5e-27 Score=201.88 Aligned_cols=233 Identities=22% Similarity=0.367 Sum_probs=190.3
Q ss_pred ccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCC
Q 016974 64 QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTD 143 (379)
Q Consensus 64 ~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~ 143 (379)
++|.+.|.+++.++||++||+|+.|..|.||+..+.+.++.++.|.+.|.+++|-.....+.+++.|+.+++|+++.
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~--- 275 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ--- 275 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhH---
Confidence 48999999999999999999999999999999999999999999999999999998889999999999999999874
Q ss_pred CCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEE
Q 016974 144 KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFV 223 (379)
Q Consensus 144 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 223 (379)
.....++.||.+.|..+..... ...+-.|+.|+++++|++....++.. .+|...+-++++- +...|+
T Consensus 276 ----~s~vetlyGHqd~v~~IdaL~r-eR~vtVGgrDrT~rlwKi~eesqlif------rg~~~sidcv~~I--n~~Hfv 342 (479)
T KOG0299|consen 276 ----LSYVETLYGHQDGVLGIDALSR-ERCVTVGGRDRTVRLWKIPEESQLIF------RGGEGSIDCVAFI--NDEHFV 342 (479)
T ss_pred ----hHHHHHHhCCccceeeechhcc-cceEEeccccceeEEEeccccceeee------eCCCCCeeeEEEe--ccccee
Confidence 2345678899999998887764 34555667999999999976554433 4677788888886 345789
Q ss_pred EecCCCcEEEEEccCCccceEEE-ecc-----------cCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCc-eeEEEee
Q 016974 224 SGSCDSTARLWDTRVASRAVRTF-HGH-----------EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH-QLQVYYQ 290 (379)
Q Consensus 224 sg~~d~~i~vwd~~~~~~~~~~~-~~h-----------~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~-~~~~~~~ 290 (379)
+|+.||.|.+|++... +++++. .+| +.+|++++..|..+++++||.+|.|++|-+..+- .+..+..
T Consensus 343 sGSdnG~IaLWs~~KK-kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ 421 (479)
T KOG0299|consen 343 SGSDNGSIALWSLLKK-KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYS 421 (479)
T ss_pred eccCCceEEEeeeccc-CceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeee
Confidence 9999999999998755 344332 222 2389999999999999999999999999998772 2222211
Q ss_pred ccCCCCCCCeEEEEEccCCCEEEEEE
Q 016974 291 QHGENEIPHVTSIAFSISGRLLFAGY 316 (379)
Q Consensus 291 ~~~~~~~~~v~~~~fs~~g~~l~sg~ 316 (379)
-.-.+.|++++|+++|++|++|.
T Consensus 422 ---ls~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 422 ---LSLVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred ---cccccEEEEEEEccCCCEEEEec
Confidence 12345799999999999887774
No 107
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4e-26 Score=189.07 Aligned_cols=245 Identities=19% Similarity=0.297 Sum_probs=188.8
Q ss_pred eeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCC-CceEEEeeCC
Q 016974 102 THAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGD 180 (379)
Q Consensus 102 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~d 180 (379)
+..+..|.+.+.++|. +|.++|+||.|.+|+|||+.... ....+..|.+.|+++.|.+.- ...|++|+.|
T Consensus 36 lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~-------qlg~ll~HagsitaL~F~~~~S~shLlS~sdD 106 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRK-------QLGILLSHAGSITALKFYPPLSKSHLLSGSDD 106 (362)
T ss_pred cccccccccceeEEEe--cceeEeccCCCCcEEEEeccchh-------hhcceeccccceEEEEecCCcchhheeeecCC
Confidence 4456678888888875 48999999999999999997543 234566799999999998743 2379999999
Q ss_pred CeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEcc
Q 016974 181 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP 260 (379)
Q Consensus 181 ~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp 260 (379)
|.|.+|+...=.....+ .+|...|+.++++| .+++.++-+.|+.+++|++-.++.....--.+. -+.|.|+|
T Consensus 107 G~i~iw~~~~W~~~~sl-----K~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~--at~v~w~~ 178 (362)
T KOG0294|consen 107 GHIIIWRVGSWELLKSL-----KAHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNK--ATLVSWSP 178 (362)
T ss_pred CcEEEEEcCCeEEeeee-----cccccccceeEecC-CCceEEEEcCCceeeeehhhcCccceeeccCCc--ceeeEEcC
Confidence 99999998765555444 78999999999998 567888999999999999876543222112233 34499999
Q ss_pred CCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccC
Q 016974 261 DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQN 340 (379)
Q Consensus 261 ~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~ 340 (379)
.|.+++.++.+ .|-+|.+...+....... . ..+.++.|- ++.+|++|.+|+.|.+||.....+...+ .
T Consensus 179 ~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~-----~-~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~----~ 246 (362)
T KOG0294|consen 179 QGDHFVVSGRN-KIDIYQLDNASVFREIEN-----P-KRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEF----L 246 (362)
T ss_pred CCCEEEEEecc-EEEEEecccHhHhhhhhc-----c-ccceeeeec-CCceEEEecCCceEEEeccCCCccceee----e
Confidence 99999888876 588998876543322211 1 235677765 5678999999999999998775554444 6
Q ss_pred CccCceeEEEE--CCCCCeEEEeeCCCcEEEEecCce
Q 016974 341 SHEGRITCLGL--SADGSALCTGSWDTNLKIWAFGGY 375 (379)
Q Consensus 341 ~h~~~v~~~~~--s~d~~~l~s~s~D~~i~vw~~~~~ 375 (379)
.|..+|-.+.+ .|++.+|+|+|.||.|+||+++..
T Consensus 247 AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 247 AHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred cchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 89999999985 578999999999999999999875
No 108
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.5e-27 Score=212.99 Aligned_cols=303 Identities=21% Similarity=0.293 Sum_probs=232.4
Q ss_pred EeeccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCC--ceeeEeecCCcceEEEEE-CCCCCEEEEeeCCCcEEE
Q 016974 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS--QKTHAIKLPCAWVMTCAF-SPTGQSVACGGLDSVCSI 135 (379)
Q Consensus 59 ~~~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~--~~~~~~~~~~~~v~~~~~-s~~g~~l~~~~~d~~i~i 135 (379)
+...++.|.+-|+.+....+++.|+|+|.|-+|++|+...+ -+..+++.|...|.++++ .++...+|+||-|+.|.+
T Consensus 65 ~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~Ifl 144 (735)
T KOG0308|consen 65 YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFL 144 (735)
T ss_pred hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEE
Confidence 56789999999999999999999999999999999998876 567788999999999999 889999999999999999
Q ss_pred EEcCCCCC----CCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEE
Q 016974 136 FNLNSPTD----KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLS 211 (379)
Q Consensus 136 w~~~~~~~----~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~ 211 (379)
||++.... ...+.+......|+...|++++..+.+ ..+++|+..+-+++||.+++.+...+ .+|...|..
T Consensus 145 WDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~kimkL-----rGHTdNVr~ 218 (735)
T KOG0308|consen 145 WDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCKKIMKL-----RGHTDNVRV 218 (735)
T ss_pred EEccCcchhhhhhccccccccCCCCCccceeeeecCCcc-eEEEecCcccceEEeccccccceeee-----eccccceEE
Confidence 99996522 111222222233899999999998865 68999999999999999998877766 699999999
Q ss_pred EEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeec
Q 016974 212 VSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ 291 (379)
Q Consensus 212 ~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~ 291 (379)
+..++ ++..+++++.||+|++||+.- .+++.++..|...|+++..+|+-+++.+|+.||.|..=|+++......+..+
T Consensus 219 ll~~d-DGt~~ls~sSDgtIrlWdLgq-QrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~ 296 (735)
T KOG0308|consen 219 LLVND-DGTRLLSASSDGTIRLWDLGQ-QRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKE 296 (735)
T ss_pred EEEcC-CCCeEeecCCCceEEeeeccc-cceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecC
Confidence 99986 778899999999999999984 4678889999999999999999999999999999999999885433333221
Q ss_pred cCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEeccccc------C--------------CccCceeEEEE
Q 016974 292 HGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ------N--------------SHEGRITCLGL 351 (379)
Q Consensus 292 ~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~------~--------------~h~~~v~~~~~ 351 (379)
..+|..+..+...+-+-+++.|+.|.-|...-.......+... . ....+|..-+.
T Consensus 297 -----daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~m 371 (735)
T KOG0308|consen 297 -----DAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAM 371 (735)
T ss_pred -----CCchhhhhhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceeccCchhhhhhhh
Confidence 1245555555444444667788888888532211110000000 0 00112233333
Q ss_pred CCCCCeEEEeeCCCcEEEEecCc
Q 016974 352 SADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 352 s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
-.|-+++++=..+|.+.+||+-+
T Consensus 372 L~dkRhVlTkDa~gnv~lwDIl~ 394 (735)
T KOG0308|consen 372 LNDKRHVLTKDAKGNVALWDILA 394 (735)
T ss_pred hcCcceEeeecCCCCEEEEEeee
Confidence 35778999999999999999755
No 109
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=6.9e-25 Score=195.61 Aligned_cols=272 Identities=17% Similarity=0.175 Sum_probs=193.5
Q ss_pred CeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEE-EEeeCCCcEEEEEcCCCCCCCCCcceeeeecccc
Q 016974 80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSV-ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK 158 (379)
Q Consensus 80 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~ 158 (379)
+.++|++.|+.+++||..+++....+..+. .+..++|+|+|+.+ ++++.++.+++||..... ....+..+.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~-------~~~~~~~~~ 73 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGE-------VIGTLPSGP 73 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCc-------EEEeccCCC
Confidence 578899999999999999998888877654 36779999999976 567789999999987532 222233333
Q ss_pred cceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCC-cEEEEEcc
Q 016974 159 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS-TARLWDTR 237 (379)
Q Consensus 159 ~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~-~i~vwd~~ 237 (379)
. +..+.|+|++...+++++.|+.+++||+.+......+. +...+.++.++| ++.++++++.++ .+.+||..
T Consensus 74 ~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~------~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~ 145 (300)
T TIGR03866 74 D-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP------VGVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTK 145 (300)
T ss_pred C-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee------CCCCcceEEECC-CCCEEEEEecCCCeEEEEeCC
Confidence 2 45678999876555666779999999998876554442 122356788887 666777777664 56778986
Q ss_pred CCccceEEEecccCCeeEEEEccCCCEEEEe-eCCCeEEEEECCCCceeEEEeeccCC--CCCCCeEEEEEccCCCEEEE
Q 016974 238 VASRAVRTFHGHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGHQLQVYYQQHGE--NEIPHVTSIAFSISGRLLFA 314 (379)
Q Consensus 238 ~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~-s~D~~i~iwd~~~~~~~~~~~~~~~~--~~~~~v~~~~fs~~g~~l~s 314 (379)
.. ....... ....+.+++|+|+|++|+.+ ..|+.|++||+++++.+..+...... ........++|+|+|++++.
T Consensus 146 ~~-~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~ 223 (300)
T TIGR03866 146 TY-EIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFV 223 (300)
T ss_pred CC-eEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEE
Confidence 54 2332222 23356789999999988544 56999999999988765544211100 01112356889999998655
Q ss_pred E-EecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEe-eCCCcEEEEecCc
Q 016974 315 G-YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG-SWDTNLKIWAFGG 374 (379)
Q Consensus 315 g-~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~-s~D~~i~vw~~~~ 374 (379)
+ ..++.|.+||..+++....+ .+...+.+++|+|+|++|+++ +.+++|++|++..
T Consensus 224 ~~~~~~~i~v~d~~~~~~~~~~-----~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 224 ALGPANRVAVVDAKTYEVLDYL-----LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred EcCCCCeEEEEECCCCcEEEEE-----EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 4 45668999999877765443 133478999999999999886 5699999999887
No 110
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=2.7e-26 Score=207.77 Aligned_cols=301 Identities=22% Similarity=0.291 Sum_probs=226.7
Q ss_pred ccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCC--ceeeEeec-----CCcceEEEEECCCCCEEEEeeCCCcEE
Q 016974 62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS--QKTHAIKL-----PCAWVMTCAFSPTGQSVACGGLDSVCS 134 (379)
Q Consensus 62 ~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~--~~~~~~~~-----~~~~v~~~~~s~~g~~l~~~~~d~~i~ 134 (379)
.+.||.+-|+++.|+|++..|+|+|.|.++.+|...+. --+...+. ..+....+-|+|++..+++-|..|-.+
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence 45599999999999999989999999999999976543 33333332 234467888999999999999999999
Q ss_pred EEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEE
Q 016974 135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSI 214 (379)
Q Consensus 135 iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~ 214 (379)
+|-... ...........||.+.|..+.|.|.+ .+|++.|.|.|-|++-.- |......+..-...|.-.+.++++
T Consensus 342 lWkt~d----~~~w~~~~~iSGH~~~V~dv~W~psG-eflLsvs~DQTTRlFa~w-g~q~~wHEiaRPQiHGyDl~c~~~ 415 (764)
T KOG1063|consen 342 LWKTKD----KTFWTQEPVISGHVDGVKDVDWDPSG-EFLLSVSLDQTTRLFARW-GRQQEWHEIARPQIHGYDLTCLSF 415 (764)
T ss_pred EEeccC----ccceeeccccccccccceeeeecCCC-CEEEEeccccceeeeccc-ccccceeeecccccccccceeeeh
Confidence 998221 22333445677999999999999986 589999999999997543 211112222222457777888888
Q ss_pred eCCCCcEEEEecCCCcEEEEEccCC-------------------------------------------cc----------
Q 016974 215 SGSNSRMFVSGSCDSTARLWDTRVA-------------------------------------------SR---------- 241 (379)
Q Consensus 215 ~~~~~~~l~sg~~d~~i~vwd~~~~-------------------------------------------~~---------- 241 (379)
-+. ...|++|.+.+.+|+|+.... ..
T Consensus 416 vn~-~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~ 494 (764)
T KOG1063|consen 416 VNE-DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLA 494 (764)
T ss_pred ccC-CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccc
Confidence 764 457889999999999985300 00
Q ss_pred ----------------------ceEEEecccCCeeEEEEccCCCEEEEeeCCC-----eEEEEECCCCceeEEEeeccCC
Q 016974 242 ----------------------AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG-----TCRLFDIRTGHQLQVYYQQHGE 294 (379)
Q Consensus 242 ----------------------~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~-----~i~iwd~~~~~~~~~~~~~~~~ 294 (379)
.++.+-||.-.|++++.+|+|+.+||++... .|++|+..+..+.+.+.
T Consensus 495 ~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~----- 569 (764)
T KOG1063|consen 495 AAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELE----- 569 (764)
T ss_pred cCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheec-----
Confidence 0112247888899999999999999998643 58999998876665432
Q ss_pred CCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceE-EEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecC
Q 016974 295 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV-VLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 373 (379)
Q Consensus 295 ~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~-~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~ 373 (379)
.|.-.|+.++|||||+||++.+.|+++.+|....... ...+.. .+.|+.-|.+..|+||+.++||+|.|++|+||...
T Consensus 570 ~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~-~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~ 648 (764)
T KOG1063|consen 570 GHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFAC-LKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEP 648 (764)
T ss_pred ccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhcc-ccccceEEEEcccCcccceeEEecCCceEEEEecc
Confidence 2344699999999999999999999999998533211 111111 36799999999999999999999999999999876
Q ss_pred ce
Q 016974 374 GY 375 (379)
Q Consensus 374 ~~ 375 (379)
..
T Consensus 649 ~~ 650 (764)
T KOG1063|consen 649 DL 650 (764)
T ss_pred Cc
Confidence 53
No 111
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=1.1e-26 Score=220.30 Aligned_cols=258 Identities=24% Similarity=0.384 Sum_probs=200.2
Q ss_pred cceEEEEECCCCCEEEEee--CCCcEEEEEcCCCCCC----CCC-cceeeeecccccceEEEEEecCCCceEEEeeCCCe
Q 016974 110 AWVMTCAFSPTGQSVACGG--LDSVCSIFNLNSPTDK----DGN-LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT 182 (379)
Q Consensus 110 ~~v~~~~~s~~g~~l~~~~--~d~~i~iw~~~~~~~~----~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~ 182 (379)
..+.+++.+|+|..+++|| .|+.+.||+..+-... ..+ .+..-.+..|.+.|.|+.|+|++ .+|++|+.|+.
T Consensus 14 ~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG-~~lAsGSDD~~ 92 (942)
T KOG0973|consen 14 KSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDG-SYLASGSDDRL 92 (942)
T ss_pred eeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCC-CeEeeccCcce
Confidence 3478899999999999999 9999999998753211 111 12234566899999999999986 68999999999
Q ss_pred EEEeecCCCeeEEEec-------------CccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecc
Q 016974 183 CVLWDITTGLRTSVFG-------------GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH 249 (379)
Q Consensus 183 i~~wd~~~~~~~~~~~-------------~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h 249 (379)
|.+|+.........++ .....+|...|..+.|+| ++.+|++++.|++|.+|+.++. ..+..+.+|
T Consensus 93 v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF-~~~~vl~~H 170 (942)
T KOG0973|consen 93 VMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTF-ELLKVLRGH 170 (942)
T ss_pred EEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEccccc-eeeeeeecc
Confidence 9999876310000010 012368999999999998 7789999999999999999988 788899999
Q ss_pred cCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCC-CCCCeEEEEEccCCCEEEEEEe-cC---cEEEE
Q 016974 250 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN-EIPHVTSIAFSISGRLLFAGYS-NG---DCYVW 324 (379)
Q Consensus 250 ~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~-~~~~v~~~~fs~~g~~l~sg~~-dg---~i~iw 324 (379)
.+.|-.+.|.|-|+|||+-++|++|+||++.+....+.+..+..+. .......+.|||||++|++..+ ++ .+.|.
T Consensus 171 ~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Ii 250 (942)
T KOG0973|consen 171 QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAII 250 (942)
T ss_pred cccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEE
Confidence 9999999999999999999999999999977654444443333221 2235789999999999999742 22 57777
Q ss_pred eCCCceEEEecccccCCccCceeEEEECC-----CCC------------eEEEeeCCCcEEEEecCc
Q 016974 325 DTLLAKVVLNLGSLQNSHEGRITCLGLSA-----DGS------------ALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 325 d~~~~~~~~~~~~~~~~h~~~v~~~~~s~-----d~~------------~l~s~s~D~~i~vw~~~~ 374 (379)
+-.+.+....+ .+|.+++.++.|+| ..+ .+|+||.|++|.||....
T Consensus 251 eR~tWk~~~~L----vGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~ 313 (942)
T KOG0973|consen 251 ERGTWKVDKDL----VGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL 313 (942)
T ss_pred ecCCceeeeee----ecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence 76555555555 68999999999997 111 688999999999998743
No 112
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.3e-26 Score=188.86 Aligned_cols=246 Identities=21% Similarity=0.277 Sum_probs=192.7
Q ss_pred eEeeccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCC--EEEEeeCCCcEEE
Q 016974 58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ--SVACGGLDSVCSI 135 (379)
Q Consensus 58 ~~~~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~--~l~~~~~d~~i~i 135 (379)
.....+..|.++|++++. ++.++||||.|-+|+|||..+......+-.|.+.++++.|.+.-. .|++|+.||.|.+
T Consensus 34 ~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~i 111 (362)
T KOG0294|consen 34 KPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIII 111 (362)
T ss_pred eccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEE
Confidence 345678899999999997 478999999999999999999999989989999999999998765 8999999999999
Q ss_pred EEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEe
Q 016974 136 FNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS 215 (379)
Q Consensus 136 w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 215 (379)
|+.. .+.....+.+|.+.|+.++.+|.+ .+-++.+.|+.+++|++-.|....... ..+.. ..+.|+
T Consensus 112 w~~~-------~W~~~~slK~H~~~Vt~lsiHPS~-KLALsVg~D~~lr~WNLV~Gr~a~v~~----L~~~a--t~v~w~ 177 (362)
T KOG0294|consen 112 WRVG-------SWELLKSLKAHKGQVTDLSIHPSG-KLALSVGGDQVLRTWNLVRGRVAFVLN----LKNKA--TLVSWS 177 (362)
T ss_pred EEcC-------CeEEeeeecccccccceeEecCCC-ceEEEEcCCceeeeehhhcCccceeec----cCCcc--eeeEEc
Confidence 9975 355778899999999999999985 567889999999999998876554442 22322 337788
Q ss_pred CCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCC
Q 016974 216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN 295 (379)
Q Consensus 216 ~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~ 295 (379)
+ .+.+|+.++.+ .|-+|.+.... ....+ .....+.++.|. ++.+|++|++|+.|++||.....+...+.. |
T Consensus 178 ~-~Gd~F~v~~~~-~i~i~q~d~A~-v~~~i-~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~A-H--- 248 (362)
T KOG0294|consen 178 P-QGDHFVVSGRN-KIDIYQLDNAS-VFREI-ENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLA-H--- 248 (362)
T ss_pred C-CCCEEEEEecc-EEEEEecccHh-Hhhhh-hccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeec-c---
Confidence 6 55566666655 58899876442 22222 123557778775 677899999999999999887666555433 2
Q ss_pred CCCCeEEEEE--ccCCCEEEEEEecCcEEEEeCCCc
Q 016974 296 EIPHVTSIAF--SISGRLLFAGYSNGDCYVWDTLLA 329 (379)
Q Consensus 296 ~~~~v~~~~f--s~~g~~l~sg~~dg~i~iwd~~~~ 329 (379)
...|.++.+ .|.+.||+++++||.|++||....
T Consensus 249 -~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 249 -ENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred -hhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 234666653 567899999999999999998655
No 113
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=3.7e-26 Score=196.57 Aligned_cols=248 Identities=20% Similarity=0.304 Sum_probs=199.4
Q ss_pred eeccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcC
Q 016974 60 CRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLN 139 (379)
Q Consensus 60 ~~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~ 139 (379)
..+|+||+..|+.+.|+++...++++|.|..|+||...........+.|...|+.+..+|.|+|+++++.|++....|+.
T Consensus 254 l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~ 333 (506)
T KOG0289|consen 254 LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDIS 333 (506)
T ss_pred hhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEcc
Confidence 35889999999999999999999999999999999998888888888999999999999999999999999999999987
Q ss_pred CCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCC
Q 016974 140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 219 (379)
Q Consensus 140 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 219 (379)
+... + ....-.+..-.+++.+|+||+ ..|.+|..|+.+++||+.++.....| .+|.++|.++.|+. ++
T Consensus 334 ~g~~----l-t~vs~~~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~~a~F-----pght~~vk~i~FsE-NG 401 (506)
T KOG0289|consen 334 SGSQ----L-TVVSDETSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTNVAKF-----PGHTGPVKAISFSE-NG 401 (506)
T ss_pred CCcE----E-EEEeeccccceeEEeeEcCCc-eEEeccCCCceEEEEEcCCccccccC-----CCCCCceeEEEecc-Cc
Confidence 6431 1 100000112247899999985 68899999999999999988766655 68999999999996 78
Q ss_pred cEEEEecCCCcEEEEEccCCccceEEEec-ccCCeeEEEEccCCCEEEEeeCCCeEEEEECCC--CceeEEEeeccCCCC
Q 016974 220 RMFVSGSCDSTARLWDTRVASRAVRTFHG-HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT--GHQLQVYYQQHGENE 296 (379)
Q Consensus 220 ~~l~sg~~d~~i~vwd~~~~~~~~~~~~~-h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~--~~~~~~~~~~~~~~~ 296 (379)
.++++++.|+.|++||+|... ...++.- ....|.++.|.+.|.+|+.++.|=.|.+++-.+ ...+..+. -+
T Consensus 402 Y~Lat~add~~V~lwDLRKl~-n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~-----~~ 475 (506)
T KOG0289|consen 402 YWLATAADDGSVKLWDLRKLK-NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELA-----DH 475 (506)
T ss_pred eEEEEEecCCeEEEEEehhhc-ccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhh-----hc
Confidence 899999999999999999653 3444432 234699999999999999998887777776333 22222221 12
Q ss_pred CCCeEEEEEccCCCEEEEEEecCcEEEEe
Q 016974 297 IPHVTSIAFSISGRLLFAGYSNGDCYVWD 325 (379)
Q Consensus 297 ~~~v~~~~fs~~g~~l~sg~~dg~i~iwd 325 (379)
.+..+++.|....+++++++.|..++++-
T Consensus 476 sg~st~v~Fg~~aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 476 SGLSTGVRFGEHAQYLASTSMDAILRLYA 504 (506)
T ss_pred ccccceeeecccceEEeeccchhheEEee
Confidence 24578999999999999999999888774
No 114
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3e-26 Score=198.90 Aligned_cols=271 Identities=18% Similarity=0.277 Sum_probs=202.6
Q ss_pred EEcCCC-cEEEEECCCCceeeEeecCCc-ceEEEEECCCCCEEEEee-CCCcEEEEEcCCCCCCCCCcceeeeecccccc
Q 016974 84 SASQDG-RLIVWNALTSQKTHAIKLPCA-WVMTCAFSPTGQSVACGG-LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGY 160 (379)
Q Consensus 84 s~s~D~-~v~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~ 160 (379)
++|.|- ++.+||+.+|....+++.... .-.++. .-.+.+++++. .-..+.+|.+....... ...--.+.
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~-~l~~~yllsaq~~rp~l~vw~i~k~~~~~-------q~~v~Pg~ 83 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLT-ALNNEYLLSAQLKRPLLHVWEILKKDQVV-------QYIVLPGP 83 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCcccccchhhh-hhchhheeeecccCccccccccCchhhhh-------hhcccccc
Confidence 345554 599999999998888876522 111111 11235665554 34578899886532111 01112467
Q ss_pred eEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccC--
Q 016974 161 VSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV-- 238 (379)
Q Consensus 161 v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~-- 238 (379)
|.+++-+|.+ .+|+.|+-.+.+.+|.+.+|..+..+ .+|=..|+++.|+. ++.+|+||+.||.|++|++-.
T Consensus 84 v~al~s~n~G-~~l~ag~i~g~lYlWelssG~LL~v~-----~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv 156 (476)
T KOG0646|consen 84 VHALASSNLG-YFLLAGTISGNLYLWELSSGILLNVL-----SAHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLV 156 (476)
T ss_pred eeeeecCCCc-eEEEeecccCcEEEEEeccccHHHHH-----HhhccceeEEEEeC-CCcEEEecCCCccEEEEEEEeec
Confidence 8888888864 56777779999999999999877766 56777899999996 788999999999999998632
Q ss_pred ------CccceEEEecccCCeeEEEEccC--CCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCC
Q 016974 239 ------ASRAVRTFHGHEGDVNTVKFFPD--GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR 310 (379)
Q Consensus 239 ------~~~~~~~~~~h~~~v~~v~~sp~--g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~ 310 (379)
...+.+.+..|.-+|+.+...+. ..+++|+|.|.++|+||+..+..+..+.-+ ..+.+++.+|.+.
T Consensus 157 ~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp------~si~av~lDpae~ 230 (476)
T KOG0646|consen 157 SADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP------SSIKAVALDPAER 230 (476)
T ss_pred ccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC------CcceeEEEccccc
Confidence 23467889999999999988764 458999999999999999999877665432 3589999999999
Q ss_pred EEEEEEecCcEEEEeCCCce--EE----------EecccccCCccC--ceeEEEECCCCCeEEEeeCCCcEEEEecCce
Q 016974 311 LLFAGYSNGDCYVWDTLLAK--VV----------LNLGSLQNSHEG--RITCLGLSADGSALCTGSWDTNLKIWAFGGY 375 (379)
Q Consensus 311 ~l~sg~~dg~i~iwd~~~~~--~~----------~~~~~~~~~h~~--~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~~ 375 (379)
.+++|+++|.|.+.+..... .. .+-.....+|.+ +|+|++++-||+.|+||+.||+|+|||+.+.
T Consensus 231 ~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 231 VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH
Confidence 99999999999988753322 00 000011257888 9999999999999999999999999998773
No 115
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=3.9e-25 Score=204.11 Aligned_cols=305 Identities=20% Similarity=0.301 Sum_probs=235.8
Q ss_pred EeeccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCC-EEEEeeCCCcEEEEE
Q 016974 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ-SVACGGLDSVCSIFN 137 (379)
Q Consensus 59 ~~~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~ 137 (379)
.+.+|++|...|+++.-+|-=..+|.|..+|+|.|+++..++.+.+++...+.|.+++|..||. .+++|+..|.+.+||
T Consensus 194 ~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wD 273 (910)
T KOG1539|consen 194 VVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWD 273 (910)
T ss_pred EEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEE
Confidence 4568999999999999999888999999999999999999999999998888999999999997 556667779999999
Q ss_pred cCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCee-EEEecCccccCCccCeEEEEEeC
Q 016974 138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-TSVFGGEFQSGHTADVLSVSISG 216 (379)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~ 216 (379)
++... ....+...|.+.|....|.|.. ..+++++.|+.+++|=..++.- ...+ ....||..+..++.+..
T Consensus 274 Le~kk------l~~v~~nah~~sv~~~~fl~~e-pVl~ta~~DnSlk~~vfD~~dg~pR~L--R~R~GHs~Pp~~irfy~ 344 (910)
T KOG1539|consen 274 LEKKK------LINVTRNAHYGSVTGATFLPGE-PVLVTAGADNSLKVWVFDSGDGVPRLL--RSRGGHSAPPSCIRFYG 344 (910)
T ss_pred cCCCe------eeeeeeccccCCcccceecCCC-ceEeeccCCCceeEEEeeCCCCcchhe--eeccCCCCCchheeeec
Confidence 98532 1223345788888888998864 5899999999999985543210 0000 12268999999999988
Q ss_pred CCCcEEEEecCCCcEEEEEccCCc---------------------------cce--------------------------
Q 016974 217 SNSRMFVSGSCDSTARLWDTRVAS---------------------------RAV-------------------------- 243 (379)
Q Consensus 217 ~~~~~l~sg~~d~~i~vwd~~~~~---------------------------~~~-------------------------- 243 (379)
.++..+.+++.|++++.+++.... +++
T Consensus 345 ~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~ 424 (910)
T KOG1539|consen 345 SQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSA 424 (910)
T ss_pred cCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceE
Confidence 888888899999988877642100 000
Q ss_pred ------------EEEe-----cccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEc
Q 016974 244 ------------RTFH-----GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS 306 (379)
Q Consensus 244 ------------~~~~-----~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs 306 (379)
..+. .....+++++.++.|++.+.|...|+|-+||+++|-....|.+ ...+..+|+.++.+
T Consensus 425 ~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~--~~ah~~~V~gla~D 502 (910)
T KOG1539|consen 425 YTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGD--SPAHKGEVTGLAVD 502 (910)
T ss_pred EEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeeccccc--CccccCceeEEEec
Confidence 0011 0124688999999999999999999999999999876666532 23345679999999
Q ss_pred cCCCEEEEEEecCcEEEEeCCCceEEEe-------------------------------------cccccCCccCceeEE
Q 016974 307 ISGRLLFAGYSNGDCYVWDTLLAKVVLN-------------------------------------LGSLQNSHEGRITCL 349 (379)
Q Consensus 307 ~~g~~l~sg~~dg~i~iwd~~~~~~~~~-------------------------------------~~~~~~~h~~~v~~~ 349 (379)
..++.+++++.+|-+.+||......... +.....+|.+.|+++
T Consensus 503 ~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~ 582 (910)
T KOG1539|consen 503 GTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDM 582 (910)
T ss_pred CCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeee
Confidence 9999999999999999998644321110 001114699999999
Q ss_pred EECCCCCeEEEeeCCCcEEEEecCc
Q 016974 350 GLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 350 ~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
+|||||++|++++.|++||+||+-.
T Consensus 583 ~FS~DgrWlisasmD~tIr~wDlpt 607 (910)
T KOG1539|consen 583 TFSPDGRWLISASMDSTIRTWDLPT 607 (910)
T ss_pred EeCCCCcEEEEeecCCcEEEEeccC
Confidence 9999999999999999999999743
No 116
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.4e-26 Score=191.94 Aligned_cols=254 Identities=25% Similarity=0.385 Sum_probs=202.8
Q ss_pred eEeeccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECC----CC----------------------------------
Q 016974 58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNAL----TS---------------------------------- 99 (379)
Q Consensus 58 ~~~~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~----~~---------------------------------- 99 (379)
.|..++.||.+.|++++|++.+.+++++|.|++..||... ..
T Consensus 181 ~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~t 260 (481)
T KOG0300|consen 181 ACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHT 260 (481)
T ss_pred cceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCce
Confidence 5778999999999999999999999999999999999621 00
Q ss_pred --ceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEe
Q 016974 100 --QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITS 177 (379)
Q Consensus 100 --~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 177 (379)
-++..+++|.+.|.++.|-..|+.+++++.|.+..+||+.... +...+.||....+.|.-+|.. .+++++
T Consensus 261 iRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge-------~v~~LtGHd~ELtHcstHptQ-rLVvTs 332 (481)
T KOG0300|consen 261 IRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGE-------VVNILTGHDSELTHCSTHPTQ-RLVVTS 332 (481)
T ss_pred eeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCc-------eeccccCcchhccccccCCcc-eEEEEe
Confidence 0123455677788899999999999999999999999997532 567789999999999999974 678999
Q ss_pred eCCCeEEEeecCCCe-eEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEE
Q 016974 178 SGDQTCVLWDITTGL-RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTV 256 (379)
Q Consensus 178 ~~d~~i~~wd~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v 256 (379)
+.|-++++||++... ....| .+|.+.|+++.|... ..+++|+.|.+|++||+++...++.++. -..+++.+
T Consensus 333 SrDtTFRLWDFReaI~sV~VF-----QGHtdtVTS~vF~~d--d~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRv 404 (481)
T KOG0300|consen 333 SRDTTFRLWDFREAIQSVAVF-----QGHTDTVTSVVFNTD--DRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRV 404 (481)
T ss_pred ccCceeEeccchhhcceeeee-----cccccceeEEEEecC--CceeecCCCceEEEeeeccccCcceeee-cCCcccee
Confidence 999999999998532 23333 699999999999853 3578999999999999999888888776 45789999
Q ss_pred EEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCC--EEEEEEecCcEEEEeCCC
Q 016974 257 KFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR--LLFAGYSNGDCYVWDTLL 328 (379)
Q Consensus 257 ~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~--~l~sg~~dg~i~iwd~~~ 328 (379)
+.+..+..|+.--+++.|++||+...+ +..+......++.-.|+|++|..+.. -|++++.|..+.=|.+..
T Consensus 405 avs~g~~iIAiPhDNRqvRlfDlnG~R-laRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 405 AVSKGHPIIAIPHDNRQVRLFDLNGNR-LARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred EeecCCceEEeccCCceEEEEecCCCc-cccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecc
Confidence 999888888888888999999997543 33332222223344589999976543 577888899999897643
No 117
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.4e-25 Score=183.86 Aligned_cols=263 Identities=16% Similarity=0.297 Sum_probs=194.6
Q ss_pred cccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCC----ceeeEeecCCcceEEEEECC--CCCEEEEeeCCCcEEEE
Q 016974 63 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS----QKTHAIKLPCAWVMTCAFSP--TGQSVACGGLDSVCSIF 136 (379)
Q Consensus 63 l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~----~~~~~~~~~~~~v~~~~~s~--~g~~l~~~~~d~~i~iw 136 (379)
-.+|.+-|+++.|.+-|+.+||||.|++|+|||.... .+....+.|.+.|..+.|.+ -|+.+|+++.|+++.||
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 3579999999999999999999999999999996433 34556788999999999965 48999999999999999
Q ss_pred EcCCCCCCC--CCcceeeeecccccceEEEEEecCC-CceEEEeeCCCeEEEeecCCCeeEEEec--Cccc------cCC
Q 016974 137 NLNSPTDKD--GNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGLRTSVFG--GEFQ------SGH 205 (379)
Q Consensus 137 ~~~~~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~~~~------~~h 205 (379)
.-....... ..+....++...+..|+.+.|.|.. +..|++++.||.+|||+......+.... .+++ ..+
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence 864322111 1233345666778899999999864 3458999999999999986643322111 1111 124
Q ss_pred ccCeEEEEEeCCC--CcEEEEecCC-----CcEEEEEccCCc---cceEEEecccCCeeEEEEccC----CCEEEEeeCC
Q 016974 206 TADVLSVSISGSN--SRMFVSGSCD-----STARLWDTRVAS---RAVRTFHGHEGDVNTVKFFPD----GNRFGTGSDD 271 (379)
Q Consensus 206 ~~~v~~~~~~~~~--~~~l~sg~~d-----~~i~vwd~~~~~---~~~~~~~~h~~~v~~v~~sp~----g~~l~s~s~D 271 (379)
.....++.|+++. ..+|+.|+.+ +.+.||...... ..+..+.+|+.+|+.++|.|+ -..||+++.|
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence 4566778887542 4578888776 578899765443 134567799999999999996 3468999999
Q ss_pred CeEEEEECCCCc---------------eeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeC
Q 016974 272 GTCRLFDIRTGH---------------QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326 (379)
Q Consensus 272 ~~i~iwd~~~~~---------------~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~ 326 (379)
| |+||.++... .+.........+|.+.|..+.|+-.|..|++.+.||.|++|..
T Consensus 249 g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 249 G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 9 9999987421 0111111223456778999999999999999999999999974
No 118
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=8.3e-26 Score=201.51 Aligned_cols=306 Identities=18% Similarity=0.260 Sum_probs=217.3
Q ss_pred CccCCcceeEeeccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCC--EEEEe
Q 016974 50 VSFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ--SVACG 127 (379)
Q Consensus 50 ~~~~~~~~~~~~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~--~l~~~ 127 (379)
..+-|....|...+.||++.|.|+...|.|.+|++||.||+||||.+.+|.++.++... ..|.+++|+|.+. .||.+
T Consensus 383 ~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d-~~I~~vaw~P~~~~~vLAvA 461 (733)
T KOG0650|consen 383 KDLRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD-SEIRSVAWNPLSDLCVLAVA 461 (733)
T ss_pred hhcCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec-ceeEEEEecCCCCceeEEEE
Confidence 33455556677789999999999999999999999999999999999999999988765 4699999999875 34444
Q ss_pred eCCCcEEEEEcCCC------------------CCCCCCc------------ceeeeecccccceEEEEEecCCCceEEEe
Q 016974 128 GLDSVCSIFNLNSP------------------TDKDGNL------------PVSRMLSGHKGYVSCCQYVPDEDTHLITS 177 (379)
Q Consensus 128 ~~d~~i~iw~~~~~------------------~~~~~~~------------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 177 (379)
-.+. +.|-+---+ ..+.... .-....-.|...|..+.|+..++ +|++.
T Consensus 462 ~~~~-~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGD-YlatV 539 (733)
T KOG0650|consen 462 VGEC-VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGD-YLATV 539 (733)
T ss_pred ecCc-eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCc-eEEEe
Confidence 4333 433332100 0000000 00123335778899999998875 56654
Q ss_pred eC---CCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCee
Q 016974 178 SG---DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVN 254 (379)
Q Consensus 178 ~~---d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~ 254 (379)
.. ...|.|.++........+ .-..+.+..+.|+|....+|+ +++ ..|++||+... ..++.+......|.
T Consensus 540 ~~~~~~~~VliHQLSK~~sQ~PF-----~kskG~vq~v~FHPs~p~lfV-aTq-~~vRiYdL~kq-elvKkL~tg~kwiS 611 (733)
T KOG0650|consen 540 MPDSGNKSVLIHQLSKRKSQSPF-----RKSKGLVQRVKFHPSKPYLFV-ATQ-RSVRIYDLSKQ-ELVKKLLTGSKWIS 611 (733)
T ss_pred ccCCCcceEEEEecccccccCch-----hhcCCceeEEEecCCCceEEE-Eec-cceEEEehhHH-HHHHHHhcCCeeee
Confidence 43 456888888654322222 223456889999987665544 443 57999998753 44444544566899
Q ss_pred EEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEe------CCC
Q 016974 255 TVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD------TLL 328 (379)
Q Consensus 255 ~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd------~~~ 328 (379)
.++.+|.|.-|+.|+.|+.+..+|+.-........ ..+...+++++|++.-.++++|+.||++.||- +..
T Consensus 612 ~msihp~GDnli~gs~d~k~~WfDldlsskPyk~l----r~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~q 687 (733)
T KOG0650|consen 612 SMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTL----RLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQ 687 (733)
T ss_pred eeeecCCCCeEEEecCCCeeEEEEcccCcchhHHh----hhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhc
Confidence 99999999999999999999999987543221111 12334689999999999999999999999883 333
Q ss_pred ceEEEecccccCCccCc----eeEEEECCCCCeEEEeeCCCcEEEEe
Q 016974 329 AKVVLNLGSLQNSHEGR----ITCLGLSADGSALCTGSWDTNLKIWA 371 (379)
Q Consensus 329 ~~~~~~~~~~~~~h~~~----v~~~~~s~d~~~l~s~s~D~~i~vw~ 371 (379)
...+..+..+ .+|... |..+.|+|..-+|+|++.||+|++|.
T Consensus 688 npliVPlK~L-~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 688 NPLIVPLKRL-RGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred CCceEeeeec-cCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence 3334444433 567655 89999999999999999999999993
No 119
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.6e-25 Score=207.38 Aligned_cols=279 Identities=15% Similarity=0.268 Sum_probs=213.8
Q ss_pred ccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCC-ceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCC
Q 016974 64 QGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS-QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPT 142 (379)
Q Consensus 64 ~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~ 142 (379)
.+|+..-+.|+|.|+|..|++|+.||.|++|+.... +.+.++..+...|.+++ .++.++++++.+++|.+|.+.+..
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia--~~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIA--CYSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEe--ecccceEEeeccceEEEeeCCCCC
Confidence 468888999999999999999999999999998766 44555544555666654 445599999999999999987643
Q ss_pred CCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEE
Q 016974 143 DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF 222 (379)
Q Consensus 143 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 222 (379)
... .+...+-++.+++++.++ .+++.||.|-.|++-++.+......+ .+|.++|.++.++| ++++|
T Consensus 88 ~~~-------iL~Rftlp~r~~~v~g~g-~~iaagsdD~~vK~~~~~D~s~~~~l-----rgh~apVl~l~~~p-~~~fL 153 (933)
T KOG1274|consen 88 EDT-------ILARFTLPIRDLAVSGSG-KMIAAGSDDTAVKLLNLDDSSQEKVL-----RGHDAPVLQLSYDP-KGNFL 153 (933)
T ss_pred ccc-------eeeeeeccceEEEEecCC-cEEEeecCceeEEEEeccccchheee-----cccCCceeeeeEcC-CCCEE
Confidence 221 222334568889998764 68999999999999998876555555 78999999999997 67899
Q ss_pred EEecCCCcEEEEEccCCccceEEEec-------c-cCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCC
Q 016974 223 VSGSCDSTARLWDTRVASRAVRTFHG-------H-EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE 294 (379)
Q Consensus 223 ~sg~~d~~i~vwd~~~~~~~~~~~~~-------h-~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~ 294 (379)
|+.+.||.|++||+... ....++.+ - ...+..++|+|+|..++..+.|+.|++|+...+.....+...+..
T Consensus 154 Avss~dG~v~iw~~~~~-~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~s 232 (933)
T KOG1274|consen 154 AVSSCDGKVQIWDLQDG-ILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSS 232 (933)
T ss_pred EEEecCceEEEEEcccc-hhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccc
Confidence 99999999999999854 22222221 1 345678999999989999999999999999887766555432221
Q ss_pred CCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEE
Q 016974 295 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 370 (379)
Q Consensus 295 ~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw 370 (379)
..++++.|||+|+|||+++-||.|.|||+.+-.. ......|.|++|-|+++.|-.-..-|+..+|
T Consensus 233 ---s~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~--------~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 233 ---SKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER--------HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred ---cceEEEEEcCCCcEEeeeccCCcEEEEecccchh--------ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 2388999999999999999999999999876111 1224579999999998876555555554444
No 120
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.8e-26 Score=213.70 Aligned_cols=251 Identities=23% Similarity=0.311 Sum_probs=167.1
Q ss_pred cCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCC---CCCcceee-eecc--cccceEEEEEecCC-CceEEEeeC
Q 016974 107 LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDK---DGNLPVSR-MLSG--HKGYVSCCQYVPDE-DTHLITSSG 179 (379)
Q Consensus 107 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~---~~~~~~~~-~~~~--h~~~v~~~~~~~~~-~~~l~s~~~ 179 (379)
.|.+.|.++.|++||+|||+||.|+.|+||.+-..... .+...... .+.. .-.++....-.... ....-.+..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 68899999999999999999999999999998641100 00000000 0000 00000000000000 000011111
Q ss_pred CCeEEEeecCC----CeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeE
Q 016974 180 DQTCVLWDITT----GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNT 255 (379)
Q Consensus 180 d~~i~~wd~~~----~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~ 255 (379)
...+ +.+... ...... ..+|.+.|+++.|+. .++|+++++|++||+|++.. ..++..|. |...|+|
T Consensus 345 s~~~-~~p~~~f~f~ekP~~e-----f~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~-~~CL~~F~-HndfVTc 414 (712)
T KOG0283|consen 345 SPCV-LLPLKAFVFSEKPFCE-----FKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGR-KECLKVFS-HNDFVTC 414 (712)
T ss_pred Cccc-cCCCccccccccchhh-----hhccchhheeccccc--CCeeEeccccccEEeecCCC-cceeeEEe-cCCeeEE
Confidence 1111 111110 011111 269999999999984 46899999999999999874 36777775 9999999
Q ss_pred EEEcc-CCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEe
Q 016974 256 VKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLN 334 (379)
Q Consensus 256 v~~sp-~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~ 334 (379)
|+|+| |.+||++||-|+.||||++...+.+ .+...+ .-|++++|+|||++.+.|+.+|.+++|++...+....
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv-~W~Dl~-----~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~ 488 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSISDKKVV-DWNDLR-----DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSD 488 (712)
T ss_pred EEecccCCCcEeecccccceEEeecCcCeeE-eehhhh-----hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEe
Confidence 99999 8899999999999999999865443 332222 3499999999999999999999999999877665543
Q ss_pred cccc-----cCCccCceeEEEECCCC-CeEEEeeCCCcEEEEecCc
Q 016974 335 LGSL-----QNSHEGRITCLGLSADG-SALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 335 ~~~~-----~~~h~~~v~~~~~s~d~-~~l~s~s~D~~i~vw~~~~ 374 (379)
.... ...|. .|+.+.|.|.. .-|+..|.|..|||++...
T Consensus 489 ~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~ 533 (712)
T KOG0283|consen 489 FHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRD 533 (712)
T ss_pred eeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccc
Confidence 3211 11233 89999998743 3477789999999999843
No 121
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.3e-25 Score=193.12 Aligned_cols=287 Identities=17% Similarity=0.280 Sum_probs=217.1
Q ss_pred cccEEEEEeeCCCCeEEEEcCCCcEEEEECC--CCceeeEeecCCcceEEEEECCCCC-EEEEeeCCCcEEEEEcCCCCC
Q 016974 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNAL--TSQKTHAIKLPCAWVMTCAFSPTGQ-SVACGGLDSVCSIFNLNSPTD 143 (379)
Q Consensus 67 ~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~--~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~ 143 (379)
.+.|++|.|+|....|++|+.|++++||.+. +...++.+.+..-++.++.|.|+|+ .++++|.......||+.....
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 3579999999999999999999999999764 4456777777788899999999999 899999999999999975331
Q ss_pred CCCCcceeeeecccc-cceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEE
Q 016974 144 KDGNLPVSRMLSGHK-GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF 222 (379)
Q Consensus 144 ~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 222 (379)
.....+.|+. ..+.....+|++ ++|+..+..|.|.+....++..+..+. -.+.|..+.|+ ++++.+
T Consensus 293 -----~k~~~~~g~e~~~~e~FeVShd~-~fia~~G~~G~I~lLhakT~eli~s~K------ieG~v~~~~fs-Sdsk~l 359 (514)
T KOG2055|consen 293 -----TKLKPPYGVEEKSMERFEVSHDS-NFIAIAGNNGHIHLLHAKTKELITSFK------IEGVVSDFTFS-SDSKEL 359 (514)
T ss_pred -----ccccCCCCcccchhheeEecCCC-CeEEEcccCceEEeehhhhhhhhheee------eccEEeeEEEe-cCCcEE
Confidence 1122233333 233444556765 589999999999999988876554442 23567888888 577888
Q ss_pred EEecCCCcEEEEEccCCccceEEEecccCCe--eEEEEccCCCEEEEeeCCCeEEEEECCCCc------eeEEEeeccCC
Q 016974 223 VSGSCDSTARLWDTRVASRAVRTFHGHEGDV--NTVKFFPDGNRFGTGSDDGTCRLFDIRTGH------QLQVYYQQHGE 294 (379)
Q Consensus 223 ~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v--~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~------~~~~~~~~~~~ 294 (379)
+.++.+|.|.+||++.. .+++.+.. .+.| ++++.+++|.|||+||+.|.|.|||..+.. ++..+ .
T Consensus 360 ~~~~~~GeV~v~nl~~~-~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~-----d 432 (514)
T KOG2055|consen 360 LASGGTGEVYVWNLRQN-SCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTV-----D 432 (514)
T ss_pred EEEcCCceEEEEecCCc-ceEEEEee-cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhh-----h
Confidence 88888999999999866 55665653 3334 566777999999999999999999965421 22111 1
Q ss_pred CCCCCeEEEEEccCCCEEEEEE--ecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEec
Q 016974 295 NEIPHVTSIAFSISGRLLFAGY--SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 372 (379)
Q Consensus 295 ~~~~~v~~~~fs~~g~~l~sg~--~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~ 372 (379)
+-...|+++.|+||++.||.++ .+..+++--+.......++... ...-+.|+|++|||.|.+||.|-.+|.|.+|.+
T Consensus 433 NLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~-n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 433 NLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTS-NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred hhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCC-CCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 2234589999999999998887 4567888777666655554332 333457999999999999999999999999998
Q ss_pred Cc
Q 016974 373 GG 374 (379)
Q Consensus 373 ~~ 374 (379)
.-
T Consensus 512 ~h 513 (514)
T KOG2055|consen 512 HH 513 (514)
T ss_pred cc
Confidence 64
No 122
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=9.3e-25 Score=201.62 Aligned_cols=302 Identities=17% Similarity=0.284 Sum_probs=232.5
Q ss_pred eeccccccccEEEEEeeCCCCe-EEEEcCCCcEEEEECCCCceeeEee-cCCcceEEEEECCCCCEEEEeeCCCcEEEEE
Q 016974 60 CRTLQGHAGKVYSLDWTSERNR-IVSASQDGRLIVWNALTSQKTHAIK-LPCAWVMTCAFSPTGQSVACGGLDSVCSIFN 137 (379)
Q Consensus 60 ~~~l~gH~~~v~~~~~~~~~~~-l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~ 137 (379)
+++|+.-.+.|++++|.-||+. +++|+..|.+.+||++..+....++ .|.+.+....|-|....+++++.|+..++|-
T Consensus 237 l~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~v 316 (910)
T KOG1539|consen 237 LMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWV 316 (910)
T ss_pred EEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEE
Confidence 3455533589999999999975 6788888999999999887777766 6778889999999999999999999999998
Q ss_pred cCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCC-------e--------eEE-------
Q 016974 138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-------L--------RTS------- 195 (379)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-------~--------~~~------- 195 (379)
.+++ ++.....+.-.||..+..+++|.......+++++.|++.+.+++... . +..
T Consensus 317 fD~~---dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~ 393 (910)
T KOG1539|consen 317 FDSG---DGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKL 393 (910)
T ss_pred eeCC---CCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhh
Confidence 8853 33344566677999999999998777788999999999888865321 0 000
Q ss_pred ------EecC--------------------------------ccccCCc------cCeEEEEEeCCCCcEEEEecCCCcE
Q 016974 196 ------VFGG--------------------------------EFQSGHT------ADVLSVSISGSNSRMFVSGSCDSTA 231 (379)
Q Consensus 196 ------~~~~--------------------------------~~~~~h~------~~v~~~~~~~~~~~~l~sg~~d~~i 231 (379)
.+.. .+...+. ..+.+++.++ -+++.+.|...|.|
T Consensus 394 k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~I 472 (910)
T KOG1539|consen 394 KLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTI 472 (910)
T ss_pred cCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeE
Confidence 0000 0001122 4567777775 56788889999999
Q ss_pred EEEEccCCccceEEE---ecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeecc----------------
Q 016974 232 RLWDTRVASRAVRTF---HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH---------------- 292 (379)
Q Consensus 232 ~vwd~~~~~~~~~~~---~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~---------------- 292 (379)
.+++++.+ .....+ ..|.++|..++...-++.+++++.||.+++||..+...+..+....
T Consensus 473 d~fNmQSG-i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~ 551 (910)
T KOG1539|consen 473 DRFNMQSG-IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAI 551 (910)
T ss_pred EEEEcccC-eeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhh
Confidence 99999854 333344 5799999999998888999999999999999987654222111000
Q ss_pred --------------------CCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEEC
Q 016974 293 --------------------GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 352 (379)
Q Consensus 293 --------------------~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s 352 (379)
-..+...|++++|||||++|++++.|++|++||+.++..+-.+. -..+.+.+.||
T Consensus 552 ~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-----vd~~~~sls~S 626 (910)
T KOG1539|consen 552 ALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-----VDSPCTSLSFS 626 (910)
T ss_pred hcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-----cCCcceeeEEC
Confidence 01244579999999999999999999999999999998876652 35678999999
Q ss_pred CCCCeEEEeeCC-CcEEEEe
Q 016974 353 ADGSALCTGSWD-TNLKIWA 371 (379)
Q Consensus 353 ~d~~~l~s~s~D-~~i~vw~ 371 (379)
|+|.+||++..| .-|++|.
T Consensus 627 PngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 627 PNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred CCCCEEEEEEecCceEEEEE
Confidence 999999999999 5699997
No 123
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.1e-25 Score=183.81 Aligned_cols=289 Identities=13% Similarity=0.207 Sum_probs=209.6
Q ss_pred EEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcc
Q 016974 70 VYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLP 149 (379)
Q Consensus 70 v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~ 149 (379)
-.|+.|++-|.+||+|..||.|-|||..|......+..|..+|.+++||++|+.|+++|.|..|++||+..+..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~------ 99 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP------ 99 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCc------
Confidence 67999999999999999999999999999888888899999999999999999999999999999999986431
Q ss_pred eeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCC
Q 016974 150 VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS 229 (379)
Q Consensus 150 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~ 229 (379)
..+ + -...+|..+.|+|.+.+..+..-.+..-.+-++..+.. ..++.. ..+....+-+.-++...++++++|..-|
T Consensus 100 l~r-i-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d-~d~dln~sas~~~fdr~g~yIitGtsKG 175 (405)
T KOG1273|consen 100 LKR-I-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKD-DDGDLNSSASHGVFDRRGKYIITGTSKG 175 (405)
T ss_pred eeE-E-EccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCC-CccccccccccccccCCCCEEEEecCcc
Confidence 111 1 13467899999998766666555555444455543221 112111 0111111112112335788999999999
Q ss_pred cEEEEEccCCccceEEEeccc-CCeeEEEEccCCCEEEEeeCCCeEEEEECCCCce------eE-EEeeccCCCCCCCeE
Q 016974 230 TARLWDTRVASRAVRTFHGHE-GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ------LQ-VYYQQHGENEIPHVT 301 (379)
Q Consensus 230 ~i~vwd~~~~~~~~~~~~~h~-~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~------~~-~~~~~~~~~~~~~v~ 301 (379)
.+.++|..+. +.+..++-.. ..|..+.|+..|..|+.-+.|+.||.|+++.-.. +. ...-+..-| .....
T Consensus 176 kllv~~a~t~-e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVN-k~~Wk 253 (405)
T KOG1273|consen 176 KLLVYDAETL-ECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVN-KLQWK 253 (405)
T ss_pred eEEEEecchh-eeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHh-hhhhh
Confidence 9999998765 4555554433 6788999999999999999999999999863110 00 000000001 12357
Q ss_pred EEEEccCCCEEEEEEecC-cEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 302 SIAFSISGRLLFAGYSNG-DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 302 ~~~fs~~g~~l~sg~~dg-~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
+++||.+|.|+++|+... .+|||....|..++.+++. .......+.|.|-...+++- ..|+|+||....
T Consensus 254 ~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~---kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 254 KCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGT---KGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred heeecCCccEEEeccccceeEEEEecCCcceeeeecCC---chhheeecccccceeeeeec-cCCceEEEEeec
Confidence 899999999999987544 7999999999988887432 12456788999988888877 779999998654
No 124
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=1.5e-25 Score=203.04 Aligned_cols=238 Identities=23% Similarity=0.365 Sum_probs=197.3
Q ss_pred EeeccccccccEEE-EEeeC-CCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEE
Q 016974 59 CCRTLQGHAGKVYS-LDWTS-ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIF 136 (379)
Q Consensus 59 ~~~~l~gH~~~v~~-~~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw 136 (379)
....+++|.+-|.+ +++-+ ++..|++|+.|.++.+|......+...+++|...|-++....++. +++||.|.++++|
T Consensus 49 ~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW 127 (745)
T KOG0301|consen 49 ETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVW 127 (745)
T ss_pred cceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEe
Confidence 34568888888877 88775 555699999999999999999999999999999888888777777 9999999999999
Q ss_pred EcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeC
Q 016974 137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG 216 (379)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 216 (379)
-... +...+.||+..|.++...|.+ .++||+.|++|++|.- +.....+ .+|.+-|..+++.+
T Consensus 128 ~~~~---------l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~--~~~l~tf-----~gHtD~VRgL~vl~ 189 (745)
T KOG0301|consen 128 RIGE---------LVYSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKG--GTLLKTF-----SGHTDCVRGLAVLD 189 (745)
T ss_pred cchh---------hhcccCCcchheeeeeecCCC--cEEeccCcceeeeccC--Cchhhhh-----ccchhheeeeEEec
Confidence 7653 334588999999999999965 7999999999999986 3444455 68999999999986
Q ss_pred CCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCC
Q 016974 217 SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENE 296 (379)
Q Consensus 217 ~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~ 296 (379)
. .-|+|++.||.|++|++. ...+..+.||+..|++++..+++..++|+++|++++||+.. ...+.+..+
T Consensus 190 ~--~~flScsNDg~Ir~w~~~--ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP----- 258 (745)
T KOG0301|consen 190 D--SHFLSCSNDGSIRLWDLD--GEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP----- 258 (745)
T ss_pred C--CCeEeecCCceEEEEecc--CceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC-----
Confidence 4 358899999999999984 36788899999999999988888899999999999999975 444444322
Q ss_pred CCCeEEEEEccCCCEEEEEEecCcEEEEeCC
Q 016974 297 IPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327 (379)
Q Consensus 297 ~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~ 327 (379)
.-.|.++.+=++|. |++|++||.||||...
T Consensus 259 ttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 259 TTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred ccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 12478888888886 5679999999999653
No 125
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.94 E-value=1.1e-25 Score=202.05 Aligned_cols=286 Identities=18% Similarity=0.251 Sum_probs=200.2
Q ss_pred CCeEEEEcCCCcEEEEECCCCce------eeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceee
Q 016974 79 RNRIVSASQDGRLIVWNALTSQK------THAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSR 152 (379)
Q Consensus 79 ~~~l~s~s~D~~v~iwd~~~~~~------~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~ 152 (379)
...|+.+..||.|.++|...... +.....|...|..+.|-|-...|++++.|.++++||+...... -.+
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~-----G~~ 138 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLV-----GGR 138 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceee-----cce
Confidence 34688999999999999764322 2334567888999999995568999999999999999864321 223
Q ss_pred eecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEE-------Eec---C------------ccccCCccCeE
Q 016974 153 MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS-------VFG---G------------EFQSGHTADVL 210 (379)
Q Consensus 153 ~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-------~~~---~------------~~~~~h~~~v~ 210 (379)
.+.||.+.|.+++|.|.+...|++|+.||.|.|||++...... ... . ..-..+...+.
T Consensus 139 ~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ 218 (720)
T KOG0321|consen 139 LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIF 218 (720)
T ss_pred eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCcee
Confidence 4789999999999999999999999999999999987432000 000 0 00013333444
Q ss_pred E---EEEeCCCCcEEEEecC-CCcEEEEEccCCccceE-------EEecc---cCCeeEEEEccCCCEEEEeeCCCeEEE
Q 016974 211 S---VSISGSNSRMFVSGSC-DSTARLWDTRVASRAVR-------TFHGH---EGDVNTVKFFPDGNRFGTGSDDGTCRL 276 (379)
Q Consensus 211 ~---~~~~~~~~~~l~sg~~-d~~i~vwd~~~~~~~~~-------~~~~h---~~~v~~v~~sp~g~~l~s~s~D~~i~i 276 (379)
+ +.++. +...|++++. |+.|+|||++......+ .+.-| .-.+.++.....|.+|.+.+.|++|.+
T Consensus 219 ssvTvv~fk-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ 297 (720)
T KOG0321|consen 219 SSVTVVLFK-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYF 297 (720)
T ss_pred eeeEEEEEe-ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEE
Confidence 3 33442 5667888877 99999999986532211 11222 123667777777899888888999999
Q ss_pred EECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCC-C
Q 016974 277 FDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD-G 355 (379)
Q Consensus 277 wd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d-~ 355 (379)
||+.+........-.+..+....+ .-..+|++.+|++|+.|...++|.+........+ ..+|...|++++|.|- -
T Consensus 298 ynm~s~s~sP~~~~sg~~~~sf~v-ks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~---l~Ght~eVt~V~w~pS~~ 373 (720)
T KOG0321|consen 298 YNMRSLSISPVAEFSGKLNSSFYV-KSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPAL---LLGHTREVTTVRWLPSAT 373 (720)
T ss_pred EeccccCcCchhhccCcccceeee-eeecCCCCceEeccCCCcceeeeeecCccCChhh---hhCcceEEEEEeeccccC
Confidence 999875432221111111111122 2356899999999999999999998766543322 2689999999999763 3
Q ss_pred CeEEEeeCCCcEEEEecCc
Q 016974 356 SALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 356 ~~l~s~s~D~~i~vw~~~~ 374 (379)
.-+|++|.|.+++||++..
T Consensus 374 t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 374 TPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred CCceeeccCcceEEEeccC
Confidence 5567779999999999854
No 126
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=9.4e-24 Score=185.02 Aligned_cols=288 Identities=19% Similarity=0.302 Sum_probs=218.4
Q ss_pred eeccccccccEEEEEeeCC--CCeEEEE--cCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEE
Q 016974 60 CRTLQGHAGKVYSLDWTSE--RNRIVSA--SQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSI 135 (379)
Q Consensus 60 ~~~l~gH~~~v~~~~~~~~--~~~l~s~--s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~i 135 (379)
...+-.....|+|++|++- |.+|+.. |.+..+.+||...+......+.....|..+.|+|.+..+.+.-..+.+..
T Consensus 147 L~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~F 226 (626)
T KOG2106|consen 147 LHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYF 226 (626)
T ss_pred eeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEE
Confidence 3344456667999999983 4555443 66778999999988888888877888999999999988877778889999
Q ss_pred EEcCCCCCCCCCcceeeeeccc-ccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEE
Q 016974 136 FNLNSPTDKDGNLPVSRMLSGH-KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSI 214 (379)
Q Consensus 136 w~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~ 214 (379)
|++....-. ....++.++ +..|.|+.|.++++ +++|..+|.|.||+..+....... ..|.+.|.++..
T Consensus 227 w~~~~~~l~----k~~~~fek~ekk~Vl~v~F~engd--viTgDS~G~i~Iw~~~~~~~~k~~-----~aH~ggv~~L~~ 295 (626)
T KOG2106|consen 227 WTLRGGSLV----KRQGIFEKREKKFVLCVTFLENGD--VITGDSGGNILIWSKGTNRISKQV-----HAHDGGVFSLCM 295 (626)
T ss_pred EEccCCceE----EEeeccccccceEEEEEEEcCCCC--EEeecCCceEEEEeCCCceEEeEe-----eecCCceEEEEE
Confidence 988753210 111122222 36799999999764 899999999999998765544433 379999999988
Q ss_pred eCCCCcEEEEecCCCcEEEEEccCCc---------------------------------------cceEEEecccCCeeE
Q 016974 215 SGSNSRMFVSGSCDSTARLWDTRVAS---------------------------------------RAVRTFHGHEGDVNT 255 (379)
Q Consensus 215 ~~~~~~~l~sg~~d~~i~vwd~~~~~---------------------------------------~~~~~~~~h~~~v~~ 255 (379)
.. ++ .|+||+.|+.|..||-.... .-....++|....+.
T Consensus 296 lr-~G-tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwg 373 (626)
T KOG2106|consen 296 LR-DG-TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWG 373 (626)
T ss_pred ec-Cc-cEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceee
Confidence 85 45 45679999999999832100 001123578888899
Q ss_pred EEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEec
Q 016974 256 VKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL 335 (379)
Q Consensus 256 v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~ 335 (379)
++.+|+...+++++.|+.+++|+ ..+.. +.... ..++.|+.|+|.| .||.|...|...+.|..+...+ ++
T Consensus 374 la~hps~~q~~T~gqdk~v~lW~--~~k~~--wt~~~----~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv-~~ 443 (626)
T KOG2106|consen 374 LATHPSKNQLLTCGQDKHVRLWN--DHKLE--WTKII----EDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLV-TI 443 (626)
T ss_pred EEcCCChhheeeccCcceEEEcc--CCcee--EEEEe----cCceeEeeccCcc-eEEEeeccceEEEEecccceeE-EE
Confidence 99999999999999999999999 22222 21111 2357899999999 9999999999999998774333 33
Q ss_pred ccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 336 GSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 336 ~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
. . ...++++++|+|+|.+||.||.|+.|+||.++.
T Consensus 444 ~---~-d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~ 478 (626)
T KOG2106|consen 444 H---T-DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSA 478 (626)
T ss_pred E---e-cCCceEEEEEcCCCCEEEEecCCCeEEEEEECC
Confidence 2 2 277999999999999999999999999999887
No 127
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=4e-27 Score=214.02 Aligned_cols=255 Identities=22% Similarity=0.398 Sum_probs=207.6
Q ss_pred eEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccc
Q 016974 81 RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGY 160 (379)
Q Consensus 81 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~ 160 (379)
.+..+..+-.+++||.... ..|...+.++..-..++.+++||.|..+.+|.+..+. ....+.+|...
T Consensus 6 ~~m~~~~~t~Lr~~~~~~~------~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~-------~i~S~~~hesp 72 (825)
T KOG0267|consen 6 FLMKTKRATKLRVWDTREF------VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN-------AITSLTGHESP 72 (825)
T ss_pred ccceeeeeeccccccchhh------hhhhhhhceeeeeccceeeccCCCceeeccccccCCc-------hhheeeccCCc
Confidence 3445566667888886432 2344455666666678899999999999999987543 22347899999
Q ss_pred eEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCc
Q 016974 161 VSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS 240 (379)
Q Consensus 161 v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~ 240 (379)
|.++.|.+.. .+|+.|+.+|+|++||++.......+ .+|...+.++.|+| .+.++++|+.|..+++||++..
T Consensus 73 IeSl~f~~~E-~LlaagsasgtiK~wDleeAk~vrtL-----tgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~- 144 (825)
T KOG0267|consen 73 IESLTFDTSE-RLLAAGSASGTIKVWDLEEAKIVRTL-----TGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRKK- 144 (825)
T ss_pred ceeeecCcch-hhhcccccCCceeeeehhhhhhhhhh-----hccccCcceeeecc-ceEEeccccccccceehhhhcc-
Confidence 9999999864 67899999999999999977655444 68999999999997 6778899999999999999955
Q ss_pred cceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCc
Q 016974 241 RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGD 320 (379)
Q Consensus 241 ~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~ 320 (379)
-+.+.+.+|...|..+.|+|+|.+++++++|.+++|||+..|+.+..|.. +.+.+..+.|+|..-++++|+.|++
T Consensus 145 Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~-----~e~~v~sle~hp~e~Lla~Gs~d~t 219 (825)
T KOG0267|consen 145 GCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKS-----HEGKVQSLEFHPLEVLLAPGSSDRT 219 (825)
T ss_pred CceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccc-----ccccccccccCchhhhhccCCCCce
Confidence 46778889999999999999999999999999999999999887776643 2345788899999999999999999
Q ss_pred EEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCC
Q 016974 321 CYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT 365 (379)
Q Consensus 321 i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~ 365 (379)
+++||+.+...+...+ .-...|.|++|+|++..+++|..+.
T Consensus 220 v~f~dletfe~I~s~~----~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 220 VRFWDLETFEVISSGK----PETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred eeeeccceeEEeeccC----CccCCceeeeecCCceeeecCchhh
Confidence 9999998777666553 3367899999999999998876553
No 128
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=1.9e-23 Score=183.07 Aligned_cols=282 Identities=16% Similarity=0.298 Sum_probs=213.2
Q ss_pred ecccccc-ccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcC
Q 016974 61 RTLQGHA-GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLN 139 (379)
Q Consensus 61 ~~l~gH~-~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~ 139 (379)
..|+++. .-|.|++|.++|+ ++||..+|+|.||+..+.+..++...|.+.|.+++.-.+|.+|- |+.|+.|..||-+
T Consensus 239 ~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~ 316 (626)
T KOG2106|consen 239 GIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDN 316 (626)
T ss_pred eccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEecccc
Confidence 3555554 3599999999875 67999999999999988888888789999999999999998877 9999999999943
Q ss_pred CCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCC
Q 016974 140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 219 (379)
Q Consensus 140 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 219 (379)
-......+ +....+.|..++ +.... |+.|...+.|-.=.++++..... .+|......++.+|+ .
T Consensus 317 y~k~r~~e------lPe~~G~iRtv~--e~~~d-i~vGTtrN~iL~Gt~~~~f~~~v------~gh~delwgla~hps-~ 380 (626)
T KOG2106|consen 317 YRKLRETE------LPEQFGPIRTVA--EGKGD-ILVGTTRNFILQGTLENGFTLTV------QGHGDELWGLATHPS-K 380 (626)
T ss_pred cccccccc------CchhcCCeeEEe--cCCCc-EEEeeccceEEEeeecCCceEEE------EecccceeeEEcCCC-h
Confidence 32222111 222345565443 22222 77777777776666665544433 478889999999985 4
Q ss_pred cEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCC
Q 016974 220 RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 299 (379)
Q Consensus 220 ~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 299 (379)
+.++|++.|+.+++|+ . .++..+.. -..++.|+.|+|.| .+|.|...|...+.|.++...+.... . ..+
T Consensus 381 ~q~~T~gqdk~v~lW~-~--~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~----d--~~~ 449 (626)
T KOG2106|consen 381 NQLLTCGQDKHVRLWN-D--HKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT----D--NEQ 449 (626)
T ss_pred hheeeccCcceEEEcc-C--CceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe----c--CCc
Confidence 5788999999999999 2 23433322 35688999999999 99999999999999998854443321 2 357
Q ss_pred eEEEEEccCCCEEEEEEecCcEEEEeCCCce-EEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 300 VTSIAFSISGRLLFAGYSNGDCYVWDTLLAK-VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 300 v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~-~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
+++++|+|+|.+||.|+.|+.|+||-+.... .....+ ..|..+|+.+.||+|+++|.+-|.|-.|..|..+.
T Consensus 450 ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~---k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~ 522 (626)
T KOG2106|consen 450 LSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVG---KCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSE 522 (626)
T ss_pred eEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEee---eecCceeEEeeecCCCceEEeccCceEEEEEcccc
Confidence 9999999999999999999999999876543 333332 23448999999999999999999999999996443
No 129
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.94 E-value=1.2e-24 Score=181.31 Aligned_cols=297 Identities=22% Similarity=0.334 Sum_probs=217.5
Q ss_pred eccccccccEEEEEeeC-----CCCeEEEEcCCCcEEEEECCCCc---eeeEee--cCCcceEEEEECCC----CCEEEE
Q 016974 61 RTLQGHAGKVYSLDWTS-----ERNRIVSASQDGRLIVWNALTSQ---KTHAIK--LPCAWVMTCAFSPT----GQSVAC 126 (379)
Q Consensus 61 ~~l~gH~~~v~~~~~~~-----~~~~l~s~s~D~~v~iwd~~~~~---~~~~~~--~~~~~v~~~~~s~~----g~~l~~ 126 (379)
+....|+.+|..++|++ +-+.++|++.+ .+.|+.....- .++.+. .+......|+|+-+ ..++|.
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 45667999999999984 23456666655 57778764322 223322 24456777887654 358999
Q ss_pred eeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCc
Q 016974 127 GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHT 206 (379)
Q Consensus 127 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~ 206 (379)
||.-|.|+|.|+.+. .+...+.+|.+.|..+.+.|+..++++++|.|.+|++|+++++.++..+++. .+|.
T Consensus 111 ~G~~GvIrVid~~~~-------~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~--egHr 181 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSG-------QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGV--EGHR 181 (385)
T ss_pred ecceeEEEEEecchh-------hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccc--cccc
Confidence 999999999998753 2456688999999999999999999999999999999999999999999875 7999
Q ss_pred cCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCc------------------------c--ce-EEEecccCCeeEEEEc
Q 016974 207 ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS------------------------R--AV-RTFHGHEGDVNTVKFF 259 (379)
Q Consensus 207 ~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~------------------------~--~~-~~~~~h~~~v~~v~~s 259 (379)
+.|.+++|++ ++.++++++.|.+|++|++.... . +. .+-.-|...|.|+.|-
T Consensus 182 deVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~ 260 (385)
T KOG1034|consen 182 DEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF 260 (385)
T ss_pred CcEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH
Confidence 9999999997 66799999999999999986211 0 00 0223467778888875
Q ss_pred cCCCEEEEeeCCCeEEEEECCC-CceeEEEeeccC--------CCCCCC--eEEEEEccCCCEEEEEEecCcEEEEeCCC
Q 016974 260 PDGNRFGTGSDDGTCRLFDIRT-GHQLQVYYQQHG--------ENEIPH--VTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (379)
Q Consensus 260 p~g~~l~s~s~D~~i~iwd~~~-~~~~~~~~~~~~--------~~~~~~--v~~~~fs~~g~~l~sg~~dg~i~iwd~~~ 328 (379)
|++++|-|-++.|..|-..+ ++.+.....+.. .-.... -...+|+|-+++||.|...|.|++||+..
T Consensus 261 --gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~ 338 (385)
T KOG1034|consen 261 --GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDN 338 (385)
T ss_pred --hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCC
Confidence 57899999999999998732 111111111000 001112 23567788999999999999999999876
Q ss_pred ceEEE--ecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEec
Q 016974 329 AKVVL--NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 372 (379)
Q Consensus 329 ~~~~~--~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~ 372 (379)
..... ++.. +.....|...+|+.||.+|+....|++|-=|+.
T Consensus 339 ~ep~~~ttl~~--s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 339 NEPPKCTTLTH--SKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred CCCccCceEEe--ccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 65431 1111 223457899999999999999999999877763
No 130
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.3e-24 Score=179.06 Aligned_cols=252 Identities=18% Similarity=0.229 Sum_probs=186.1
Q ss_pred cCCcceEEEEECCC-CCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEE
Q 016974 107 LPCAWVMTCAFSPT-GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVL 185 (379)
Q Consensus 107 ~~~~~v~~~~~s~~-g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~ 185 (379)
.+...|.+++|||. ..+++++|.|++||+|+++... .. ..+....|.++|.+++|+.++ ..+++|+.|+.+++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g----~~-~~ka~~~~~~PvL~v~Wsddg-skVf~g~~Dk~~k~ 98 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSG----QL-VPKAQQSHDGPVLDVCWSDDG-SKVFSGGCDKQAKL 98 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCC----cc-cchhhhccCCCeEEEEEccCC-ceEEeeccCCceEE
Confidence 34567899999994 4566699999999999998632 11 224456789999999999876 67899999999999
Q ss_pred eecCCCeeEEEecCccccCCccCeEEEEEeCCC-CcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCE
Q 016974 186 WDITTGLRTSVFGGEFQSGHTADVLSVSISGSN-SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNR 264 (379)
Q Consensus 186 wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~ 264 (379)
||+.+++...+ ..|.++|.++.|-+.. ...|+|||.|++|+.||.|.. .++.+++ -...++++..- ..+
T Consensus 99 wDL~S~Q~~~v------~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~-~pv~t~~-LPeRvYa~Dv~--~pm 168 (347)
T KOG0647|consen 99 WDLASGQVSQV------AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS-NPVATLQ-LPERVYAADVL--YPM 168 (347)
T ss_pred EEccCCCeeee------eecccceeEEEEecCCCcceeEecccccceeecccCCC-Ceeeeee-ccceeeehhcc--Cce
Confidence 99999865443 4799999999887532 357899999999999999955 5555554 35677777653 347
Q ss_pred EEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceE--EEec--ccccC
Q 016974 265 FGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV--VLNL--GSLQN 340 (379)
Q Consensus 265 l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~--~~~~--~~~~~ 340 (379)
++.+..++.|.+|+++.+...... +...-.-.+.|++.-++.+..+.|+-+|.+.|..+..+.. -.++ +....
T Consensus 169 ~vVata~r~i~vynL~n~~te~k~---~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~ 245 (347)
T KOG0647|consen 169 AVVATAERHIAVYNLENPPTEFKR---IESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTN 245 (347)
T ss_pred eEEEecCCcEEEEEcCCCcchhhh---hcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCC
Confidence 888889999999999865432111 1111223478999888888889999999999887655422 1122 11101
Q ss_pred Cc---cCceeEEEECCCCCeEEEeeCCCcEEEEecCceee
Q 016974 341 SH---EGRITCLGLSADGSALCTGSWDTNLKIWAFGGYRR 377 (379)
Q Consensus 341 ~h---~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~~~~ 377 (379)
.- --+|++|+|+|.-..|++++.||+...||-++-+|
T Consensus 246 ~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~k 285 (347)
T KOG0647|consen 246 SVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTK 285 (347)
T ss_pred CCCCceEEecceEeecccceEEEecCCceEEEecchhhhh
Confidence 11 12688999999999999999999999999776444
No 131
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.1e-23 Score=187.74 Aligned_cols=218 Identities=20% Similarity=0.314 Sum_probs=176.1
Q ss_pred cceeEeeccccccc-cEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcE
Q 016974 55 TDLVCCRTLQGHAG-KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVC 133 (379)
Q Consensus 55 ~~~~~~~~l~gH~~-~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i 133 (379)
..+.+..++.||.+ .|.+++|. ++..|+|.+.+|.|.-||+.++++...+....+.+.+++.+|.+..++.|+.||.+
T Consensus 56 ~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl 134 (691)
T KOG2048|consen 56 NNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVL 134 (691)
T ss_pred CCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceE
Confidence 35567778888764 69999999 56788999999999999999999999999999999999999999999999999977
Q ss_pred EEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccc---cCCccCeE
Q 016974 134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ---SGHTADVL 210 (379)
Q Consensus 134 ~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~---~~h~~~v~ 210 (379)
..++..+. .....+.+.-.++.|.++.|.|++ ..+++|+.||.|++||..++........... .....-|.
T Consensus 135 ~~~s~~p~-----~I~~~r~l~rq~sRvLslsw~~~~-~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVW 208 (691)
T KOG2048|consen 135 YDFSIGPD-----KITYKRSLMRQKSRVLSLSWNPTG-TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVW 208 (691)
T ss_pred EEEecCCc-----eEEEEeecccccceEEEEEecCCc-cEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEE
Confidence 77776542 233445566667899999999975 5699999999999999998866553222111 12333467
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCC
Q 016974 211 SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG 282 (379)
Q Consensus 211 ~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~ 282 (379)
++.+.. ...+++|..-|+|++||.... ..++.+..|.+.|.+++..++++++++++.|+.|.-+...+.
T Consensus 209 Sv~~Lr--d~tI~sgDS~G~V~FWd~~~g-TLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 209 SVLFLR--DSTIASGDSAGTVTFWDSIFG-TLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTN 277 (691)
T ss_pred EEEEee--cCcEEEecCCceEEEEcccCc-chhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCC
Confidence 777763 347899999999999998765 677788889999999999999999999999999887765443
No 132
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.94 E-value=2.9e-25 Score=194.04 Aligned_cols=264 Identities=19% Similarity=0.273 Sum_probs=201.9
Q ss_pred EEEEEeeCCCCe-EEEEcCCCcEEEEECCC--CceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCC
Q 016974 70 VYSLDWTSERNR-IVSASQDGRLIVWNALT--SQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDG 146 (379)
Q Consensus 70 v~~~~~~~~~~~-l~s~s~D~~v~iwd~~~--~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~ 146 (379)
+.++.|+....+ +++.+.|..+++|.-.. ++....-+.......|++-.....|+++||..+.++|||+...
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k----- 111 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAK----- 111 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHH-----
Confidence 889999886543 34556788999997432 1222222222233344444445589999999999999999743
Q ss_pred CcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEec
Q 016974 147 NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS 226 (379)
Q Consensus 147 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~ 226 (379)
.+.+.+.+|+..|+++.|.-. +.+|++++..|-|.+..+.++.+...+. .+....|.-+.+++....+|.+++
T Consensus 112 --l~hr~lkdh~stvt~v~YN~~-DeyiAsvs~gGdiiih~~~t~~~tt~f~----~~sgqsvRll~ys~skr~lL~~as 184 (673)
T KOG4378|consen 112 --LIHRFLKDHQSTVTYVDYNNT-DEYIASVSDGGDIIIHGTKTKQKTTTFT----IDSGQSVRLLRYSPSKRFLLSIAS 184 (673)
T ss_pred --HHhhhccCCcceeEEEEecCC-cceeEEeccCCcEEEEecccCcccccee----cCCCCeEEEeecccccceeeEeec
Confidence 255678899999999999865 5799999999999999999987766653 222344667899998888899999
Q ss_pred CCCcEEEEEccCCccceEEEecccCCeeEEEEcc-CCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEE
Q 016974 227 CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF 305 (379)
Q Consensus 227 ~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp-~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~f 305 (379)
.+|.|.+||+............|..+...|+|+| +..+|++.+.|..|.+||++..+....+.-. .+.+.++|
T Consensus 185 d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~------~Plstvaf 258 (673)
T KOG4378|consen 185 DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYS------HPLSTVAF 258 (673)
T ss_pred cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeec------CCcceeee
Confidence 9999999999866554555678999999999999 5677899999999999999876554443322 25789999
Q ss_pred ccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCC
Q 016974 306 SISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD 354 (379)
Q Consensus 306 s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d 354 (379)
+++|.+|++|...|.|+.||++..+...... ..|...|+|++|-|-
T Consensus 259 ~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~---sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 259 SECGTYLCAGNSKGELIAYDMRSTKAPVAVR---SAHDASVTRVAFQPS 304 (673)
T ss_pred cCCceEEEeecCCceEEEEecccCCCCceEe---eecccceeEEEeeec
Confidence 9999999999999999999987655433321 578899999999664
No 133
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.93 E-value=6e-24 Score=184.19 Aligned_cols=299 Identities=16% Similarity=0.189 Sum_probs=212.7
Q ss_pred EeeccccccccEEEEEeeCCC--CeEEEEcCCCcEEEEECCCCc----eeeEeecCCcceEEEEECCCC-CEEEEeeCCC
Q 016974 59 CCRTLQGHAGKVYSLDWTSER--NRIVSASQDGRLIVWNALTSQ----KTHAIKLPCAWVMTCAFSPTG-QSVACGGLDS 131 (379)
Q Consensus 59 ~~~~l~gH~~~v~~~~~~~~~--~~l~s~s~D~~v~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~d~ 131 (379)
.+...+-|.+.|++++|+|.- +++|+|..-|+|-+||+.+.+ ....+..|.+.|.++.|+|.. ..+++.|+||
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG 257 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence 444566688999999999954 579999999999999995322 234456778899999999976 5899999999
Q ss_pred cEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEE
Q 016974 132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLS 211 (379)
Q Consensus 132 ~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~ 211 (379)
+|++-|+.... ......+..-......+.|+.++ ..++.+..=|.+.+||++++..... ...-|...|.+
T Consensus 258 tiR~~D~~~~i-----~e~v~s~~~d~~~fs~~d~~~e~-~~vl~~~~~G~f~~iD~R~~~s~~~----~~~lh~kKI~s 327 (498)
T KOG4328|consen 258 TIRLQDFEGNI-----SEEVLSLDTDNIWFSSLDFSAES-RSVLFGDNVGNFNVIDLRTDGSEYE----NLRLHKKKITS 327 (498)
T ss_pred eeeeeeecchh-----hHHHhhcCccceeeeeccccCCC-ccEEEeecccceEEEEeecCCccch----hhhhhhcccce
Confidence 99999987532 11111111122234556676654 4566666666999999987643211 12467789999
Q ss_pred EEEeCCCCcEEEEecCCCcEEEEEccCCcc---ceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECC----CCce
Q 016974 212 VSISGSNSRMFVSGSCDSTARLWDTRVASR---AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR----TGHQ 284 (379)
Q Consensus 212 ~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~---~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~----~~~~ 284 (379)
++++|....+|+|++.|++.+|||+|.... ++-..-.|.-.|+++.|||.+..|++-+.|..|+|||.. ....
T Consensus 328 v~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p 407 (498)
T KOG4328|consen 328 VALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEP 407 (498)
T ss_pred eecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCc
Confidence 999999999999999999999999985321 223344699999999999988889999999999999973 2222
Q ss_pred eEEEeeccCCCCCCC--eEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeE-EEECCCCCeEE-E
Q 016974 285 LQVYYQQHGENEIPH--VTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITC-LGLSADGSALC-T 360 (379)
Q Consensus 285 ~~~~~~~~~~~~~~~--v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~-~~~s~d~~~l~-s 360 (379)
..++. |.....-+ .....|.|+..+|++|-.-..|-|+|...++.+..+.. .-...|.+ ..|+|-+..++ .
T Consensus 408 ~~~I~--Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~---P~~~tI~~vn~~HP~~~~~~aG 482 (498)
T KOG4328|consen 408 LGTIP--HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHD---PESSTIPSVNEFHPMRDTLAAG 482 (498)
T ss_pred cceee--ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccC---ccccccccceeecccccceecc
Confidence 22221 11111111 34578999999999999888999999888876666532 11223333 36899888455 4
Q ss_pred eeCCCcEEEEec
Q 016974 361 GSWDTNLKIWAF 372 (379)
Q Consensus 361 ~s~D~~i~vw~~ 372 (379)
++..|.|+||.-
T Consensus 483 ~~s~Gki~vft~ 494 (498)
T KOG4328|consen 483 GNSSGKIYVFTN 494 (498)
T ss_pred CCccceEEEEec
Confidence 556788998863
No 134
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=5.3e-24 Score=175.02 Aligned_cols=217 Identities=25% Similarity=0.355 Sum_probs=164.9
Q ss_pred cCCcceEEEEECC-CCCEEEEeeCCCcEEEEEcCCCCCCCCCcce--------eeeecccccceEEEEEecCCCceEEEe
Q 016974 107 LPCAWVMTCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPV--------SRMLSGHKGYVSCCQYVPDEDTHLITS 177 (379)
Q Consensus 107 ~~~~~v~~~~~s~-~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~--------~~~~~~h~~~v~~~~~~~~~~~~l~s~ 177 (379)
.|.+.|.++.+.+ .|+++++|+.||.|.+||+.+.........+ .....+|+-.|..+.|-|-+...+.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 4567788888876 5899999999999999999875422111111 112347888999999999888889999
Q ss_pred eCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCC--CcEEEEecCCCcEEEEEccCCccceEEEecccCCeeE
Q 016974 178 SGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN--SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNT 255 (379)
Q Consensus 178 ~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~ 255 (379)
+.|.++++||..+-+....+. ..+.|.+-+++|-. ..++++|..|-.|++.|+..+ ...+++.||.+.|.+
T Consensus 121 SFDhtlKVWDtnTlQ~a~~F~------me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG-s~sH~LsGHr~~vla 193 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQEAVDFK------MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG-SFSHTLSGHRDGVLA 193 (397)
T ss_pred cccceEEEeecccceeeEEee------cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC-cceeeeccccCceEE
Confidence 999999999998866554442 23445555555422 347888999999999999865 567789999999999
Q ss_pred EEEccCCCE-EEEeeCCCeEEEEECCCC-ceeEEEeecc---------CCCCCCCeEEEEEccCCCEEEEEEecCcEEEE
Q 016974 256 VKFFPDGNR-FGTGSDDGTCRLFDIRTG-HQLQVYYQQH---------GENEIPHVTSIAFSISGRLLFAGYSNGDCYVW 324 (379)
Q Consensus 256 v~~sp~g~~-l~s~s~D~~i~iwd~~~~-~~~~~~~~~~---------~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iw 324 (379)
|.|+|...+ |++||.||.|++||++.- .....+-+.. ...+.+.|..++|+.+|.++++.+.|..+++|
T Consensus 194 V~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~w 273 (397)
T KOG4283|consen 194 VEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVW 273 (397)
T ss_pred EEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEe
Confidence 999997655 789999999999999865 2222222111 12234568999999999999999999999999
Q ss_pred eCCCce
Q 016974 325 DTLLAK 330 (379)
Q Consensus 325 d~~~~~ 330 (379)
+...++
T Consensus 274 n~~~G~ 279 (397)
T KOG4283|consen 274 NMESGR 279 (397)
T ss_pred ecccCc
Confidence 976664
No 135
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.9e-24 Score=187.77 Aligned_cols=232 Identities=18% Similarity=0.273 Sum_probs=187.3
Q ss_pred cccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCC--C
Q 016974 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTD--K 144 (379)
Q Consensus 67 ~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~--~ 144 (379)
.++|.|++-+|+|.+|+.|...|.+++|.+.+|..+..+..|...|+++.|+.||.++++||.||.|.+|.+..-.. .
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~ 160 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN 160 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence 45799999999999999888999999999999999999999999999999999999999999999999999864221 1
Q ss_pred CCCcceeeeecccccceEEEEEecC-CCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEE
Q 016974 145 DGNLPVSRMLSGHKGYVSCCQYVPD-EDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFV 223 (379)
Q Consensus 145 ~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 223 (379)
+......+.+..|+-+|+.+...+. ....++++|.|.++++||+..+..+..+. ....+.+++.+|. ...+.
T Consensus 161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~------fp~si~av~lDpa-e~~~y 233 (476)
T KOG0646|consen 161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT------FPSSIKAVALDPA-ERVVY 233 (476)
T ss_pred CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe------cCCcceeEEEccc-ccEEE
Confidence 1233455778899999999887654 24579999999999999999987665542 2346788888874 56777
Q ss_pred EecCCCcEEEEEccCCc---------------cceEEEecccC--CeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeE
Q 016974 224 SGSCDSTARLWDTRVAS---------------RAVRTFHGHEG--DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ 286 (379)
Q Consensus 224 sg~~d~~i~vwd~~~~~---------------~~~~~~~~h~~--~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~ 286 (379)
.|+.+|.|.+.++.... ..+..+.||.+ +|+|++++-||..|++|+.||.++|||+.+.+.+.
T Consensus 234 iGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iR 313 (476)
T KOG0646|consen 234 IGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIR 313 (476)
T ss_pred ecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHH
Confidence 89999999888764321 23456789988 99999999999999999999999999998877665
Q ss_pred EEeeccCCCCCCCeEEEEEccCCC
Q 016974 287 VYYQQHGENEIPHVTSIAFSISGR 310 (379)
Q Consensus 287 ~~~~~~~~~~~~~v~~~~fs~~g~ 310 (379)
.... ..++|+-+.+.|--+
T Consensus 314 tl~~-----~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 314 TLQT-----SKGPVTNLQINPLER 332 (476)
T ss_pred HHhh-----hccccceeEeecccc
Confidence 5432 234577777765433
No 136
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=1.4e-23 Score=190.99 Aligned_cols=296 Identities=17% Similarity=0.248 Sum_probs=220.2
Q ss_pred EEEEeeCCCCeEEEEcCCCcEEEEECCCCcee---eEeecCCcceEEEEECC------C-----CCEEEEeeCCCcEEEE
Q 016974 71 YSLDWTSERNRIVSASQDGRLIVWNALTSQKT---HAIKLPCAWVMTCAFSP------T-----GQSVACGGLDSVCSIF 136 (379)
Q Consensus 71 ~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~---~~~~~~~~~v~~~~~s~------~-----g~~l~~~~~d~~i~iw 136 (379)
-++.|.+...+|...-.|..++|||+..-.++ +.+-.|...|+.+.--| . ...+.+++.|++|++|
T Consensus 328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW 407 (1080)
T KOG1408|consen 328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLW 407 (1080)
T ss_pred eEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEe
Confidence 46779988889988899999999999765543 22333444444433222 1 2358899999999999
Q ss_pred EcCCCCCC------------------CCCccee------------eeecccccceEEEEEecCCCceEEEeeCCCeEEEe
Q 016974 137 NLNSPTDK------------------DGNLPVS------------RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLW 186 (379)
Q Consensus 137 ~~~~~~~~------------------~~~~~~~------------~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~w 186 (379)
++...... +++.... ....+.+..+.+++.+|++ ++|++|..-|++++|
T Consensus 408 ~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g-qhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 408 DLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG-QHLASGDRGGNLRVY 486 (1080)
T ss_pred ecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc-ceecccCccCceEEE
Confidence 99752110 0000000 0111234468899999975 789999999999999
Q ss_pred ecCCCeeEEEecCccccCCccCeEEEEEeCCC--CcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCC--
Q 016974 187 DITTGLRTSVFGGEFQSGHTADVLSVSISGSN--SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG-- 262 (379)
Q Consensus 187 d~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g-- 262 (379)
|+..-...... .+|...|.++.++.+. .++|++++.|+.|+++|+...-.++.++.+|...|++|.|-.+|
T Consensus 487 ~Lq~l~~~~~~-----eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln 561 (1080)
T KOG1408|consen 487 DLQELEYTCFM-----EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLN 561 (1080)
T ss_pred Eehhhhhhhhe-----ecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCc
Confidence 99765443333 6899999999987542 46899999999999999986666788999999999999998876
Q ss_pred CEEEEeeCCCeEEEEECCC-CceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCC
Q 016974 263 NRFGTGSDDGTCRLFDIRT-GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNS 341 (379)
Q Consensus 263 ~~l~s~s~D~~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~ 341 (379)
..+++++.|..|. |+... ......+...+..-....+..++..|+.+++++++.|..|+|||...++..+.++.- .+
T Consensus 562 ~~MiscGADksim-Fr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs-~~ 639 (1080)
T KOG1408|consen 562 RKMISCGADKSIM-FRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGS-RD 639 (1080)
T ss_pred eEEEeccCchhhh-eehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeeccc-cc
Confidence 6789999998764 34332 111122222222223346899999999999999999999999999999998888655 46
Q ss_pred ccCceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 342 HEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 342 h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
|.+....+...|.|-+||+...|+++.++||-.
T Consensus 640 ~eG~lIKv~lDPSgiY~atScsdktl~~~Df~s 672 (1080)
T KOG1408|consen 640 HEGDLIKVILDPSGIYLATSCSDKTLCFVDFVS 672 (1080)
T ss_pred CCCceEEEEECCCccEEEEeecCCceEEEEecc
Confidence 778888899999999999999999999999865
No 137
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.2e-23 Score=194.65 Aligned_cols=250 Identities=18% Similarity=0.312 Sum_probs=196.9
Q ss_pred cCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEe
Q 016974 107 LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLW 186 (379)
Q Consensus 107 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~w 186 (379)
.|......++|.|+|++|++++.|+.|++|+..+..+. ..++.-+...|.+++... +.|++|+.+++|.+|
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~------P~ti~~~g~~v~~ia~~s---~~f~~~s~~~tv~~y 81 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE------PETIDISGELVSSIACYS---NHFLTGSEQNTVLRY 81 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC------CchhhccCceeEEEeecc---cceEEeeccceEEEe
Confidence 45666889999999999999999999999998765211 112222566777776533 479999999999999
Q ss_pred ecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEE
Q 016974 187 DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG 266 (379)
Q Consensus 187 d~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~ 266 (379)
.+.++..-..+ .-..-++..++++. ++.+++.||.|-.|++-++... ...+.+.+|.++|.++.|+|.+.+||
T Consensus 82 ~fps~~~~~iL-----~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~-s~~~~lrgh~apVl~l~~~p~~~fLA 154 (933)
T KOG1274|consen 82 KFPSGEEDTIL-----ARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDS-SQEKVLRGHDAPVLQLSYDPKGNFLA 154 (933)
T ss_pred eCCCCCcccee-----eeeeccceEEEEec-CCcEEEeecCceeEEEEecccc-chheeecccCCceeeeeEcCCCCEEE
Confidence 99876543222 22345677888886 6789999999999999998765 35678899999999999999999999
Q ss_pred EeeCCCeEEEEECCCCceeEEEeeccCCCC---CCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCcc
Q 016974 267 TGSDDGTCRLFDIRTGHQLQVYYQQHGENE---IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHE 343 (379)
Q Consensus 267 s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~---~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~ 343 (379)
+.+-||.|++||+.++.....+..-...++ ...+..++|+|+|..++.-..|+.|.+|+.........+.. +.+.
T Consensus 155 vss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~--~~~s 232 (933)
T KOG1274|consen 155 VSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRD--KLSS 232 (933)
T ss_pred EEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecc--cccc
Confidence 999999999999998776554433222211 23577899999988888888999999999887776666532 3344
Q ss_pred CceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 344 GRITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 344 ~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
..+.++.|+|.|++||+++.||.|.||++..
T Consensus 233 s~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 233 SKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred cceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 5599999999999999999999999999984
No 138
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.3e-25 Score=204.25 Aligned_cols=239 Identities=22% Similarity=0.402 Sum_probs=206.4
Q ss_pred eccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCC
Q 016974 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS 140 (379)
Q Consensus 61 ~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~ 140 (379)
+.+..|...|.++..-..++.+++|+.|..+-+|.......+..+.+|...|.++.|+++..+|+.|+.+|+|++||+..
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee 101 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE 101 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence 45667888999998877788999999999999999888777888999999999999999999999999999999999974
Q ss_pred CCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCc
Q 016974 141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR 220 (379)
Q Consensus 141 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 220 (379)
. ...+++.||...+.++.|+|.+ .+.++|+.|..+++||++..-+...+ .+|...+..+.+.| +++
T Consensus 102 A-------k~vrtLtgh~~~~~sv~f~P~~-~~~a~gStdtd~~iwD~Rk~Gc~~~~-----~s~~~vv~~l~lsP-~Gr 167 (825)
T KOG0267|consen 102 A-------KIVRTLTGHLLNITSVDFHPYG-EFFASGSTDTDLKIWDIRKKGCSHTY-----KSHTRVVDVLRLSP-DGR 167 (825)
T ss_pred h-------hhhhhhhccccCcceeeeccce-EEeccccccccceehhhhccCceeee-----cCCcceeEEEeecC-CCc
Confidence 2 2557899999999999999986 57799999999999999866666666 46888889999997 788
Q ss_pred EEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCe
Q 016974 221 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV 300 (379)
Q Consensus 221 ~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v 300 (379)
++++|+.|..++|||..-. +....|..|++.|.++.|+|..-.+++||.|+++++||+++-+.+... ......|
T Consensus 168 ~v~~g~ed~tvki~d~~ag-k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~-----~~~~~~v 241 (825)
T KOG0267|consen 168 WVASGGEDNTVKIWDLTAG-KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSG-----KPETDGV 241 (825)
T ss_pred eeeccCCcceeeeeccccc-ccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeecc-----CCccCCc
Confidence 9999999999999998744 677889999999999999999999999999999999999875443221 2235579
Q ss_pred EEEEEccCCCEEEEEEecC
Q 016974 301 TSIAFSISGRLLFAGYSNG 319 (379)
Q Consensus 301 ~~~~fs~~g~~l~sg~~dg 319 (379)
.+.+|+|+|+.+++|....
T Consensus 242 ~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 242 RSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred eeeeecCCceeeecCchhh
Confidence 9999999999999987654
No 139
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=2.4e-23 Score=176.43 Aligned_cols=253 Identities=21% Similarity=0.307 Sum_probs=185.0
Q ss_pred CCcceEEEEECCCCC--EEEEeeCCCcEEEEEcCCCCC---------CCCCcceeeeecccccceEEEEEecCCCceEEE
Q 016974 108 PCAWVMTCAFSPTGQ--SVACGGLDSVCSIFNLNSPTD---------KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLIT 176 (379)
Q Consensus 108 ~~~~v~~~~~s~~g~--~l~~~~~d~~i~iw~~~~~~~---------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 176 (379)
|.+.+..+.-++-|+ +.++=+..|.+.||++..... ...+.....++.+|.+.-+.+.|+|-....|++
T Consensus 150 h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Lls 229 (440)
T KOG0302|consen 150 HYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLS 229 (440)
T ss_pred cccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccccc
Confidence 344556666666554 556667789999999875321 112234456788999999999999966666899
Q ss_pred eeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCc-cceEEEecccCCeeE
Q 016974 177 SSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVNT 255 (379)
Q Consensus 177 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~-~~~~~~~~h~~~v~~ 255 (379)
|.--+.|++|...++.... -... ..+|...|-.+.|+|....+|+|||.||+|+|||+|... +..-..++|.+.|+-
T Consensus 230 GDc~~~I~lw~~~~g~W~v-d~~P-f~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNV 307 (440)
T KOG0302|consen 230 GDCVKGIHLWEPSTGSWKV-DQRP-FTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNV 307 (440)
T ss_pred CccccceEeeeeccCceee-cCcc-ccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceee
Confidence 9888999999988764321 1111 257999999999999999999999999999999999762 233344889999999
Q ss_pred EEEccCCCEEEEeeCCCeEEEEECCC---CceeEEEeeccCCCCCCCeEEEEEccCC-CEEEEEEecCcEEEEeCCCceE
Q 016974 256 VKFFPDGNRFGTGSDDGTCRLFDIRT---GHQLQVYYQQHGENEIPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKV 331 (379)
Q Consensus 256 v~~sp~g~~l~s~s~D~~i~iwd~~~---~~~~~~~~~~~~~~~~~~v~~~~fs~~g-~~l~sg~~dg~i~iwd~~~~~~ 331 (379)
+.|+....+||+|++||+++|||+|. ++++..|.. |..+|+++.|+|.. ..|++++.|..|.+||+....-
T Consensus 308 ISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~-----Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D 382 (440)
T KOG0302|consen 308 ISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKY-----HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEAD 382 (440)
T ss_pred EEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEe-----ccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCC
Confidence 99999888999999999999999986 334455533 34679999999964 4778888999999999743221
Q ss_pred -----EEeccc-------ccCCc--cCceeEEEECCCC-CeEEEeeCCCcE
Q 016974 332 -----VLNLGS-------LQNSH--EGRITCLGLSADG-SALCTGSWDTNL 367 (379)
Q Consensus 332 -----~~~~~~-------~~~~h--~~~v~~~~~s~d~-~~l~s~s~D~~i 367 (379)
...... +.-.| ...|..+.|.++- .+|++.+.||.-
T Consensus 383 ~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfn 433 (440)
T KOG0302|consen 383 EEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFN 433 (440)
T ss_pred hhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEeccccee
Confidence 000001 00123 3467888998764 578888888853
No 140
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=2.4e-24 Score=188.61 Aligned_cols=244 Identities=23% Similarity=0.390 Sum_probs=190.9
Q ss_pred CCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeee-cccccceEEEEEecCCCceEEEeeCCCeEEEe
Q 016974 108 PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML-SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLW 186 (379)
Q Consensus 108 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~w 186 (379)
|..-|-++.++...+++.+||. +.|+|||+..+.. +.|+...- ....++|.+|..+|++ +.|++|+.-.++.||
T Consensus 418 HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~---k~PvsqLdcl~rdnyiRSckL~pdg-rtLivGGeastlsiW 492 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGN---KSPVSQLDCLNRDNYIRSCKLLPDG-RTLIVGGEASTLSIW 492 (705)
T ss_pred cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCC---CCccccccccCcccceeeeEecCCC-ceEEeccccceeeee
Confidence 4455667788988899998875 5799999986532 22222211 1235689999999986 678999999999999
Q ss_pred ecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEE
Q 016974 187 DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG 266 (379)
Q Consensus 187 d~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~ 266 (379)
|+.........+. .........++++| +.++.+++..||.|.|||+.+. ..++.|+||...+.|+.+++||..|-
T Consensus 493 DLAapTprikael---tssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq-~~VrqfqGhtDGascIdis~dGtklW 567 (705)
T KOG0639|consen 493 DLAAPTPRIKAEL---TSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQ-TLVRQFQGHTDGASCIDISKDGTKLW 567 (705)
T ss_pred eccCCCcchhhhc---CCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccc-eeeecccCCCCCceeEEecCCCceee
Confidence 9987533221111 12223467788886 7789999999999999999865 68899999999999999999999999
Q ss_pred EeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCce
Q 016974 267 TGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRI 346 (379)
Q Consensus 267 s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v 346 (379)
+|+-|+++|-||++++++++... ....|.++.++|++.+|+.|=+++.+.+-....... ..+ ..|+.-|
T Consensus 568 TGGlDntvRcWDlregrqlqqhd------F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k-yql----hlheScV 636 (705)
T KOG0639|consen 568 TGGLDNTVRCWDLREGRQLQQHD------FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK-YQL----HLHESCV 636 (705)
T ss_pred cCCCccceeehhhhhhhhhhhhh------hhhhheecccCCCccceeeecccCcEEEEecCCccc-eee----cccccEE
Confidence 99999999999999988764321 123589999999999999999999988877543322 222 4588999
Q ss_pred eEEEECCCCCeEEEeeCCCcEEEEec
Q 016974 347 TCLGLSADGSALCTGSWDTNLKIWAF 372 (379)
Q Consensus 347 ~~~~~s~d~~~l~s~s~D~~i~vw~~ 372 (379)
.++.|++-|++.+|.+.|+.+..|..
T Consensus 637 LSlKFa~cGkwfvStGkDnlLnawrt 662 (705)
T KOG0639|consen 637 LSLKFAYCGKWFVSTGKDNLLNAWRT 662 (705)
T ss_pred EEEEecccCceeeecCchhhhhhccC
Confidence 99999999999999999999999973
No 141
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=8.1e-22 Score=175.79 Aligned_cols=265 Identities=14% Similarity=0.109 Sum_probs=181.9
Q ss_pred eeccccccccEEEEEeeCCCCeE-EEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEe-eCCCcEEEEE
Q 016974 60 CRTLQGHAGKVYSLDWTSERNRI-VSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACG-GLDSVCSIFN 137 (379)
Q Consensus 60 ~~~l~gH~~~v~~~~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~d~~i~iw~ 137 (379)
..++.+|.. +.+++|+|+++.+ ++++.|+.|++||..+++....+..+.. +..++|+|+++.++++ +.|+.+++||
T Consensus 24 ~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d 101 (300)
T TIGR03866 24 TRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVID 101 (300)
T ss_pred EEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEE
Confidence 345555544 6789999999876 6778899999999998887766654433 5678899999977654 5689999999
Q ss_pred cCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCC-eEEEeecCCCeeEEEecCccccCCccCeEEEEEeC
Q 016974 138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ-TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG 216 (379)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~-~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 216 (379)
+.... ....+. +...+..+.|+|++ ..+++++.++ .+.+||..++....... .......+.+++
T Consensus 102 ~~~~~-------~~~~~~-~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~d~~~~~~~~~~~------~~~~~~~~~~s~ 166 (300)
T TIGR03866 102 IETRK-------VLAEIP-VGVEPEGMAVSPDG-KIVVNTSETTNMAHFIDTKTYEIVDNVL------VDQRPRFAEFTA 166 (300)
T ss_pred CCCCe-------EEeEee-CCCCcceEEECCCC-CEEEEEecCCCeEEEEeCCCCeEEEEEE------cCCCccEEEECC
Confidence 87521 122222 12235678999976 4566666654 56778988765543321 112345677887
Q ss_pred CCCcEEEEecCCCcEEEEEccCCccceEEEeccc-----C--CeeEEEEccCCCEEEE-eeCCCeEEEEECCCCceeEEE
Q 016974 217 SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE-----G--DVNTVKFFPDGNRFGT-GSDDGTCRLFDIRTGHQLQVY 288 (379)
Q Consensus 217 ~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~-----~--~v~~v~~sp~g~~l~s-~s~D~~i~iwd~~~~~~~~~~ 288 (379)
.+..+++++..++.|++||+... +.+..+..+. . ....++|+|++++++. .+.++.+.+||+++++.+...
T Consensus 167 dg~~l~~~~~~~~~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~ 245 (300)
T TIGR03866 167 DGKELWVSSEIGGTVSVIDVATR-KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYL 245 (300)
T ss_pred CCCEEEEEcCCCCEEEEEEcCcc-eeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 54444466667999999999865 3333332211 1 2346889999998544 455678999999988766543
Q ss_pred eeccCCCCCCCeEEEEEccCCCEEEEEE-ecCcEEEEeCCCceEEEecccccCCccCceeEEEECC
Q 016974 289 YQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 353 (379)
Q Consensus 289 ~~~~~~~~~~~v~~~~fs~~g~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 353 (379)
.. + ..+.+++|+|+|++|+++. .+|.|.+||..+++.+..+. .. ...+.++++|
T Consensus 246 ~~--~----~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~----~~-~~~~~~~~~~ 300 (300)
T TIGR03866 246 LV--G----QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK----VG-RLPWGVVVRP 300 (300)
T ss_pred Ee--C----CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE----cc-cccceeEeCC
Confidence 22 1 2478999999999998874 68999999999988776662 22 3447888765
No 142
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=3.3e-23 Score=171.41 Aligned_cols=245 Identities=19% Similarity=0.305 Sum_probs=182.6
Q ss_pred CcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeec
Q 016974 109 CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI 188 (379)
Q Consensus 109 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~ 188 (379)
...|.++.|+|.+..|+.+++||.+++|+..... .+....|..++.+|+|.++ ..+++|+.||.|+.+|+
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~--------l~~~~~~~~plL~c~F~d~--~~~~~G~~dg~vr~~Dl 82 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS--------LKLKFKHGAPLLDCAFADE--STIVTGGLDGQVRRYDL 82 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchh--------hhhheecCCceeeeeccCC--ceEEEeccCceEEEEEe
Confidence 4678999999999999999999999999987531 2223468889999999873 57999999999999999
Q ss_pred CCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEe
Q 016974 189 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG 268 (379)
Q Consensus 189 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~ 268 (379)
.++..... ..|...+.++...+.. ..+++|++|++|++||.+.. .....+. ....|.++.. .|+.|+.|
T Consensus 83 n~~~~~~i------gth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~~-~~~~~~d-~~kkVy~~~v--~g~~LvVg 151 (323)
T KOG1036|consen 83 NTGNEDQI------GTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRNK-VVVGTFD-QGKKVYCMDV--SGNRLVVG 151 (323)
T ss_pred cCCcceee------ccCCCceEEEEeeccC-CeEEEcccCccEEEEecccc-ccccccc-cCceEEEEec--cCCEEEEe
Confidence 98764433 4688999999998644 46889999999999999853 3333333 3447888876 47789999
Q ss_pred eCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEE--EeCC----CceEEEecccccCC-
Q 016974 269 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV--WDTL----LAKVVLNLGSLQNS- 341 (379)
Q Consensus 269 s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~i--wd~~----~~~~~~~~~~~~~~- 341 (379)
+.|..+.+||+++..... +.....-.-.+.|+++-|++.-.++++-||.|.+ +|.. ..+.....+.....
T Consensus 152 ~~~r~v~iyDLRn~~~~~---q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~ 228 (323)
T KOG1036|consen 152 TSDRKVLIYDLRNLDEPF---QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKD 228 (323)
T ss_pred ecCceEEEEEcccccchh---hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCC
Confidence 999999999999865432 1111112235889999999998899999998776 4433 11111111111000
Q ss_pred --ccCceeEEEECCCCCeEEEeeCCCcEEEEecCceee
Q 016974 342 --HEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYRR 377 (379)
Q Consensus 342 --h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~~~~ 377 (379)
---||++++|+|--+.+|||+.||.|.+|+..-..|
T Consensus 229 ~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKr 266 (323)
T KOG1036|consen 229 TEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKR 266 (323)
T ss_pred ceEEEEeceeEeccccceEEecCCCceEEEccCcchhh
Confidence 113799999999999999999999999999765433
No 143
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=1.7e-23 Score=177.40 Aligned_cols=211 Identities=21% Similarity=0.347 Sum_probs=166.8
Q ss_pred ccccccccEEEEEeeCCC--CeEEEEcCCCcEEEEECCC----------------CceeeEeecCCcceEEEEECCCC-C
Q 016974 62 TLQGHAGKVYSLDWTSER--NRIVSASQDGRLIVWNALT----------------SQKTHAIKLPCAWVMTCAFSPTG-Q 122 (379)
Q Consensus 62 ~l~gH~~~v~~~~~~~~~--~~l~s~s~D~~v~iwd~~~----------------~~~~~~~~~~~~~v~~~~~s~~g-~ 122 (379)
...+|.+.|+-+.-++-+ .+.++=+..|.|+|||+.. .+.+.++..|...-+.++|||-. .
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g 225 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG 225 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc
Confidence 445688888887766654 4556668899999999742 23566777888888999999943 2
Q ss_pred EEEEeeCCCcEEEEEcCCCCCCCCCcce-eeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCcc
Q 016974 123 SVACGGLDSVCSIFNLNSPTDKDGNLPV-SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF 201 (379)
Q Consensus 123 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 201 (379)
.|++|.--+.|++|...+. .+.+ .+.+.+|+..|-.++|+|.....|+|||.|++|+|||++.+.....+.
T Consensus 226 ~LlsGDc~~~I~lw~~~~g-----~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~--- 297 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTG-----SWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS--- 297 (440)
T ss_pred ccccCccccceEeeeeccC-----ceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE---
Confidence 4777777788999987652 2211 234668999999999999999999999999999999999884322221
Q ss_pred ccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCC--ccceEEEecccCCeeEEEEccC-CCEEEEeeCCCeEEEEE
Q 016974 202 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA--SRAVRTFHGHEGDVNTVKFFPD-GNRFGTGSDDGTCRLFD 278 (379)
Q Consensus 202 ~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~--~~~~~~~~~h~~~v~~v~~sp~-g~~l~s~s~D~~i~iwd 278 (379)
...|...|+.++|+...+ +|++|+.||+++|||+|.. .+++..+.-|..+|++|.|+|. ...|++++.|..|.|||
T Consensus 298 ~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWD 376 (440)
T KOG0302|consen 298 TKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWD 376 (440)
T ss_pred eeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEE
Confidence 167999999999997554 9999999999999999853 3578889999999999999994 56788889999999999
Q ss_pred CCC
Q 016974 279 IRT 281 (379)
Q Consensus 279 ~~~ 281 (379)
+.-
T Consensus 377 lsv 379 (440)
T KOG0302|consen 377 LSV 379 (440)
T ss_pred eec
Confidence 864
No 144
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.9e-24 Score=198.13 Aligned_cols=247 Identities=17% Similarity=0.292 Sum_probs=181.4
Q ss_pred eEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccc---cceEEEEEecCCCceEEEeeCCCeEEEeec
Q 016974 112 VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK---GYVSCCQYVPDEDTHLITSSGDQTCVLWDI 188 (379)
Q Consensus 112 v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~ 188 (379)
..++...++-..++++|.. ..+||.+++... ..++.....+.. -.+..+.|..-..++|++++..|.|.+||+
T Consensus 42 ~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~---~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 42 ANAISVNRDINQIVVAGRS-LLKLYAINPNDF---SEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL 117 (839)
T ss_pred cceEeecCCcceeEEeccc-ceeeEeeCcccC---CcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence 3455556777777777764 567887765321 111111111111 123456777555678999999999999999
Q ss_pred CCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEcc-CCCEEEE
Q 016974 189 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGT 267 (379)
Q Consensus 189 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp-~g~~l~s 267 (379)
....+...+ .....|.-.+.+++|++....+++||++||.|++||++.. ....++.+....|..|+|+| .+.+|++
T Consensus 118 nk~~rnk~l--~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~-~S~~t~~~nSESiRDV~fsp~~~~~F~s 194 (839)
T KOG0269|consen 118 NKSIRNKLL--TVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK-KSKSTFRSNSESIRDVKFSPGYGNKFAS 194 (839)
T ss_pred Cccccchhh--hHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc-cccccccccchhhhceeeccCCCceEEE
Confidence 763222221 1125799999999999999999999999999999999965 45667777888999999999 6788999
Q ss_pred eeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceE--EEecccccCCccCc
Q 016974 268 GSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV--VLNLGSLQNSHEGR 345 (379)
Q Consensus 268 ~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~--~~~~~~~~~~h~~~ 345 (379)
+.+.|.+++||+|........+ ..|.++|.|+.|+|++.+||+|+.|+.|+|||....+. ..++. -..+
T Consensus 195 ~~dsG~lqlWDlRqp~r~~~k~----~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-----Tiap 265 (839)
T KOG0269|consen 195 IHDSGYLQLWDLRQPDRCEKKL----TAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-----TIAP 265 (839)
T ss_pred ecCCceEEEeeccCchhHHHHh----hcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe-----ecce
Confidence 9999999999999765432222 23467899999999999999999999999999865443 22221 2358
Q ss_pred eeEEEECCCC-CeEEEeeC--CCcEEEEecCc
Q 016974 346 ITCLGLSADG-SALCTGSW--DTNLKIWAFGG 374 (379)
Q Consensus 346 v~~~~~s~d~-~~l~s~s~--D~~i~vw~~~~ 374 (379)
|.+|+|-|+. ..||+++. |-.|+|||+..
T Consensus 266 v~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR 297 (839)
T KOG0269|consen 266 VGRVKWRPARSYHLATCSMVVDTSVHVWDVRR 297 (839)
T ss_pred eeeeeeccCccchhhhhhccccceEEEEeecc
Confidence 9999999976 46777665 77899999877
No 145
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=7.9e-24 Score=182.87 Aligned_cols=246 Identities=16% Similarity=0.261 Sum_probs=184.9
Q ss_pred EEEEeeC-------CCCeEEEEcCCCcEEEEECCCC---------------------ceeeEeecCCcceEEEEECCC-C
Q 016974 71 YSLDWTS-------ERNRIVSASQDGRLIVWNALTS---------------------QKTHAIKLPCAWVMTCAFSPT-G 121 (379)
Q Consensus 71 ~~~~~~~-------~~~~l~s~s~D~~v~iwd~~~~---------------------~~~~~~~~~~~~v~~~~~s~~-g 121 (379)
.|++|.. .|+++|.|..|..|-|||+.-- ++......|...|..++|.-. .
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 4777753 3689999999999999997311 000111245556667777654 4
Q ss_pred CEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCcc
Q 016974 122 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF 201 (379)
Q Consensus 122 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 201 (379)
..||+||.|.+|++||++... +..++..|.+.|.++.|+|....+|++|+.|++|.+.|.+...... ..+
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~-------p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~---~~w 326 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGK-------PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSG---KEW 326 (463)
T ss_pred eeEEecCCCceEEEEEcCCCC-------cceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccC---ceE
Confidence 689999999999999998643 3455667899999999999999999999999999999998521110 011
Q ss_pred ccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccC-CCEEEEeeCCCeEEEEECC
Q 016974 202 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD-GNRFGTGSDDGTCRLFDIR 280 (379)
Q Consensus 202 ~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~-g~~l~s~s~D~~i~iwd~~ 280 (379)
...+.|-.+.|.+.....|+++..||+|+-+|+|...+++.++++|.+.|.++++++. ...++++|.|+.+++|++.
T Consensus 327 --k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~ 404 (463)
T KOG0270|consen 327 --KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFD 404 (463)
T ss_pred --EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeec
Confidence 1345688899999888899999999999999999998999999999999999999974 5578999999999999986
Q ss_pred CCceeEEEeeccCCCCCCCeEEEEEccCCC-EEEEEEecCcEEEEeCCCceE
Q 016974 281 TGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKV 331 (379)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~-~l~sg~~dg~i~iwd~~~~~~ 331 (379)
....-..... .-..+...|.++.|+-. +++.|+..+.+++||..+...
T Consensus 405 ~~~~~~v~~~---~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 405 VDSPKSVKEH---SFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred CCCCcccccc---cccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence 5433211111 11123356777778765 566788888899999876543
No 146
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.4e-22 Score=167.56 Aligned_cols=260 Identities=14% Similarity=0.221 Sum_probs=186.7
Q ss_pred cCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEec-CCCceEEEeeCCCeEEE
Q 016974 107 LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP-DEDTHLITSSGDQTCVL 185 (379)
Q Consensus 107 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~~ 185 (379)
.|..-|.++.|.+.|+.+|+++.|.+++|||.+.+ .+++.+......|.+.|..+.|.+ .-+..+++++.|+++.|
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~---s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSD---SGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred CCcceeeeeeecccCceeeeccCCCcEEEEeccCC---CCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence 45566888999999999999999999999998543 456777777889999999999964 44678999999999999
Q ss_pred eecCCCe--e--EEEecCccccCCccCeEEEEEeCCC-CcEEEEecCCCcEEEEEccCCccc-----eEEEe-------c
Q 016974 186 WDITTGL--R--TSVFGGEFQSGHTADVLSVSISGSN-SRMFVSGSCDSTARLWDTRVASRA-----VRTFH-------G 248 (379)
Q Consensus 186 wd~~~~~--~--~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~sg~~d~~i~vwd~~~~~~~-----~~~~~-------~ 248 (379)
|.-.... . ...............|+++.|.|.. +-.+++++.||.+|||+....... ...++ .
T Consensus 88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~ 167 (361)
T KOG2445|consen 88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK 167 (361)
T ss_pred eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence 9752110 0 0000001112345679999998743 557899999999999987644221 11222 3
Q ss_pred ccCCeeEEEEccC---CCEEEEeeCC-----CeEEEEECCCCc-eeEEEeeccCCCCCCCeEEEEEccCC----CEEEEE
Q 016974 249 HEGDVNTVKFFPD---GNRFGTGSDD-----GTCRLFDIRTGH-QLQVYYQQHGENEIPHVTSIAFSISG----RLLFAG 315 (379)
Q Consensus 249 h~~~v~~v~~sp~---g~~l~s~s~D-----~~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~fs~~g----~~l~sg 315 (379)
+..+..||.|+|. ..+||.|+++ +.++||.-..+. ...... .-..+..+|+.++|.|+- .+||++
T Consensus 168 ~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva--~L~d~~dpI~di~wAPn~Gr~y~~lAvA 245 (361)
T KOG2445|consen 168 NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVA--ELPDHTDPIRDISWAPNIGRSYHLLAVA 245 (361)
T ss_pred ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeeh--hcCCCCCcceeeeeccccCCceeeEEEe
Confidence 5667889999974 5678888876 478888754432 222111 112345689999999973 479999
Q ss_pred EecCcEEEEeCCCce----------------E-EEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecC
Q 016974 316 YSNGDCYVWDTLLAK----------------V-VLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 373 (379)
Q Consensus 316 ~~dg~i~iwd~~~~~----------------~-~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~ 373 (379)
+.|| |+||.+.... . +..+ .....|.+.|..+.|+-.|..|+|.+.||.||+|..+
T Consensus 246 ~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~v-s~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 246 TKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKV-SELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred ecCc-EEEEEEeeccchhhhhcccCCCCccccceEEe-eeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 9999 9999875211 1 1111 1226799999999999999999999999999999743
No 147
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3.1e-23 Score=179.24 Aligned_cols=242 Identities=25% Similarity=0.353 Sum_probs=180.5
Q ss_pred CCEEEEeeCCCcEEEEEcCCCCC--CC---C--------C-cceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEe
Q 016974 121 GQSVACGGLDSVCSIFNLNSPTD--KD---G--------N-LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLW 186 (379)
Q Consensus 121 g~~l~~~~~d~~i~iw~~~~~~~--~~---~--------~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~w 186 (379)
|+++|.|..|..|.|||++--.. +. | . ........+|+++|.++.|.....+.|+|||.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 68999999999999999873110 00 0 0 001122457999999999988777889999999999999
Q ss_pred ecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccC-CCEE
Q 016974 187 DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD-GNRF 265 (379)
Q Consensus 187 d~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~-g~~l 265 (379)
|+.++.+...+ ..|.+.|.++.|++....++++|+.|+++.+.|+|.....-..++ -.+.|..++|.|. ...+
T Consensus 272 D~~~g~p~~s~-----~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f 345 (463)
T KOG0270|consen 272 DVDTGKPKSSI-----THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENSF 345 (463)
T ss_pred EcCCCCcceeh-----hhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCceeE
Confidence 99999887776 568899999999999999999999999999999996544333333 3567999999984 5678
Q ss_pred EEeeCCCeEEEEECCCC-ceeEEEeeccCCCCCCCeEEEEEccCCC-EEEEEEecCcEEEEeCCCceEEEecccccCCcc
Q 016974 266 GTGSDDGTCRLFDIRTG-HQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHE 343 (379)
Q Consensus 266 ~s~s~D~~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~fs~~g~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~ 343 (379)
+++.+||+++-+|+|.. +++..... |..+|+++++++.-. ++++++.|+.|.+|++...........- ---
T Consensus 346 ~~~tddG~v~~~D~R~~~~~vwt~~A-----Hd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~--~~~ 418 (463)
T KOG0270|consen 346 FVSTDDGTVYYFDIRNPGKPVWTLKA-----HDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHS--FKL 418 (463)
T ss_pred EEecCCceEEeeecCCCCCceeEEEe-----ccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccccc--ccc
Confidence 88899999999999986 44433322 344799999988655 6788999999999997543321111000 011
Q ss_pred CceeEEEECCCC-CeEEEeeCCCcEEEEecCce
Q 016974 344 GRITCLGLSADG-SALCTGSWDTNLKIWAFGGY 375 (379)
Q Consensus 344 ~~v~~~~~s~d~-~~l~s~s~D~~i~vw~~~~~ 375 (379)
+...|.++.|+- -+||.|+..+.++||++..+
T Consensus 419 ~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 419 GRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred cceeecccCCCcceEEEecCccceEEEeecccC
Confidence 235677777765 56777888888999998664
No 148
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.6e-21 Score=176.70 Aligned_cols=295 Identities=19% Similarity=0.250 Sum_probs=222.5
Q ss_pred EeeccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCce-eeEeecC-CcceEEEEECCCCCEEEEeeCCCcEEEE
Q 016974 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQK-THAIKLP-CAWVMTCAFSPTGQSVACGGLDSVCSIF 136 (379)
Q Consensus 59 ~~~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~-~~~v~~~~~s~~g~~l~~~~~d~~i~iw 136 (379)
.|+.+.--..+|.+++|+.+.+.||.+-.||+|-||++..+-. ...+.++ ...+-+++|+ +|..|.+.+.+|.|.-|
T Consensus 17 rcrf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~Ew 95 (691)
T KOG2048|consen 17 RCRFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEW 95 (691)
T ss_pred EEEEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEE
Confidence 3444555567899999999999999999999999999976533 3334443 4568899999 56678888999999999
Q ss_pred EcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeC
Q 016974 137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG 216 (379)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 216 (379)
|+.+.. ....+....+.|.+++.+|.+ ..++.|+.||.+...+...+........ .-..+.+.+++|++
T Consensus 96 Dl~~lk-------~~~~~d~~gg~IWsiai~p~~-~~l~IgcddGvl~~~s~~p~~I~~~r~l---~rq~sRvLslsw~~ 164 (691)
T KOG2048|consen 96 DLHTLK-------QKYNIDSNGGAIWSIAINPEN-TILAIGCDDGVLYDFSIGPDKITYKRSL---MRQKSRVLSLSWNP 164 (691)
T ss_pred ecccCc-------eeEEecCCCcceeEEEeCCcc-ceEEeecCCceEEEEecCCceEEEEeec---ccccceEEEEEecC
Confidence 997532 223344556789999999976 5688899999888888776654332211 12347899999998
Q ss_pred CCCcEEEEecCCCcEEEEEccCCccceE---EE----ecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEe
Q 016974 217 SNSRMFVSGSCDSTARLWDTRVASRAVR---TF----HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY 289 (379)
Q Consensus 217 ~~~~~l~sg~~d~~i~vwd~~~~~~~~~---~~----~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~ 289 (379)
++..+++|+.||.|++||...+..... .+ ++...-|++|.|-.++ .|++|..-|+|++||...+..++.+.
T Consensus 165 -~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~ 242 (691)
T KOG2048|consen 165 -TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHS 242 (691)
T ss_pred -CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhh
Confidence 455688999999999999986644331 01 1123358899998776 69999999999999998887765543
Q ss_pred eccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEE
Q 016974 290 QQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKI 369 (379)
Q Consensus 290 ~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~v 369 (379)
.+.+.|.+++.++++.++++++.|+.|..|...+.+...........|...|.+++..++ .|++|+.|.++.+
T Consensus 243 -----~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 243 -----CHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAI 315 (691)
T ss_pred -----hhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEE
Confidence 345679999999999999999999999988766554433333344678889999998876 9999999999988
Q ss_pred EecCc
Q 016974 370 WAFGG 374 (379)
Q Consensus 370 w~~~~ 374 (379)
-....
T Consensus 316 ~~s~~ 320 (691)
T KOG2048|consen 316 CSSRE 320 (691)
T ss_pred ccccc
Confidence 76544
No 149
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.91 E-value=3.2e-23 Score=186.44 Aligned_cols=247 Identities=21% Similarity=0.317 Sum_probs=175.6
Q ss_pred CCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCc
Q 016974 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 200 (379)
Q Consensus 121 g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 200 (379)
...|+.+..||.|.++|.........+ ........|.++|..+.|.| ++..|++++.|.++++||+.+...... .
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee-~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~---~ 138 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEE-RQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGG---R 138 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhh-hhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeeccceeecc---e
Confidence 457899999999999998753322000 11233557999999999999 677899999999999999987654332 1
Q ss_pred cccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCcc--------------------------ceEEEecccCCee
Q 016974 201 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR--------------------------AVRTFHGHEGDVN 254 (379)
Q Consensus 201 ~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~--------------------------~~~~~~~h~~~v~ 254 (379)
...+|...|.+++|.+.+...|++|+.||.|.|||++-... -++...+|...|.
T Consensus 139 ~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ 218 (720)
T KOG0321|consen 139 LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIF 218 (720)
T ss_pred eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCcee
Confidence 23689999999999999999999999999999999873220 0112234445555
Q ss_pred E---EEEccCCCEEEEeeC-CCeEEEEECCCCceeEEEee------ccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEE
Q 016974 255 T---VKFFPDGNRFGTGSD-DGTCRLFDIRTGHQLQVYYQ------QHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVW 324 (379)
Q Consensus 255 ~---v~~sp~g~~l~s~s~-D~~i~iwd~~~~~~~~~~~~------~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iw 324 (379)
+ +-+..|...||++|. |+.|||||+++......... .......-.+.++..+..|.+|++.+.|+.|++|
T Consensus 219 ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~y 298 (720)
T KOG0321|consen 219 SSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFY 298 (720)
T ss_pred eeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEE
Confidence 5 566678999999987 99999999997643211100 0001111246788888899999999999999999
Q ss_pred eCCCceEEEecccccCCccC--ceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 325 DTLLAKVVLNLGSLQNSHEG--RITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 325 d~~~~~~~~~~~~~~~~h~~--~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
++.....-. ...+ .++.. .-..-..+||+.+|++|+.|...++|.+..
T Consensus 299 nm~s~s~sP-~~~~-sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~ 348 (720)
T KOG0321|consen 299 NMRSLSISP-VAEF-SGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSS 348 (720)
T ss_pred eccccCcCc-hhhc-cCcccceeeeeeecCCCCceEeccCCCcceeeeeecC
Confidence 976543211 1101 12211 111223589999999999999999999876
No 150
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.6e-22 Score=168.02 Aligned_cols=260 Identities=18% Similarity=0.275 Sum_probs=179.2
Q ss_pred EeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeE
Q 016974 104 AIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183 (379)
Q Consensus 104 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i 183 (379)
.+++|...|++++|+.||++|++++.|+.|++|+++......-.........+| -+.+.|.||...++++.....++
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dh---pT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDH---PTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCC---ceEEEECCCcceEEEEEccCCEE
Confidence 467899999999999999999999999999999998633211110001111234 45678999988888888888899
Q ss_pred EEeecCCC---e-eEEEec---CccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEE
Q 016974 184 VLWDITTG---L-RTSVFG---GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTV 256 (379)
Q Consensus 184 ~~wd~~~~---~-~~~~~~---~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v 256 (379)
++|.+... . ...... .++...|...+..+-.. .+..++++++.|..|.+|+++ .+.+..+......-+..
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA-~~~k~imsas~dt~i~lw~lk--Gq~L~~idtnq~~n~~a 234 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA-GNAKYIMSASLDTKICLWDLK--GQLLQSIDTNQSSNYDA 234 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeec-CCceEEEEecCCCcEEEEecC--Cceeeeeccccccccce
Confidence 99976421 1 111111 12345667777776665 377899999999999999998 46666666555566778
Q ss_pred EEccCCCEEEEeeCCCeEEEEECC---CCc--eeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceE
Q 016974 257 KFFPDGNRFGTGSDDGTCRLFDIR---TGH--QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV 331 (379)
Q Consensus 257 ~~sp~g~~l~s~s~D~~i~iwd~~---~~~--~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~ 331 (379)
+.||+|+++++++.---+++|.+- .|. .+...++ ...+...|..++||++...+++.+.||++++||..-.-.
T Consensus 235 avSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~--LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~ 312 (420)
T KOG2096|consen 235 AVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFS--LKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYE 312 (420)
T ss_pred eeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhhe--eccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEe
Confidence 999999999999988889999862 221 1111111 123456799999999999999999999999999643211
Q ss_pred ----EEecccc----cCCccCceeEEEECCCCCeEEEeeCCCcEEEEecC
Q 016974 332 ----VLNLGSL----QNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 373 (379)
Q Consensus 332 ----~~~~~~~----~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~ 373 (379)
...+... ......++ .++.+|.|+.||.+ ...+++++.-.
T Consensus 313 ~~qDpk~Lk~g~~pl~aag~~p~-RL~lsP~g~~lA~s-~gs~l~~~~se 360 (420)
T KOG2096|consen 313 AGQDPKILKEGSAPLHAAGSEPV-RLELSPSGDSLAVS-FGSDLKVFASE 360 (420)
T ss_pred cCCCchHhhcCCcchhhcCCCce-EEEeCCCCcEEEee-cCCceEEEEcc
Confidence 0111110 01123345 79999999998854 45677777543
No 151
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.90 E-value=7.9e-22 Score=168.81 Aligned_cols=293 Identities=22% Similarity=0.305 Sum_probs=204.3
Q ss_pred cccEEEEEeeCCCC-eEEEEcCCCcEEEEECCCCce---------eeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEE
Q 016974 67 AGKVYSLDWTSERN-RIVSASQDGRLIVWNALTSQK---------THAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIF 136 (379)
Q Consensus 67 ~~~v~~~~~~~~~~-~l~s~s~D~~v~iwd~~~~~~---------~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw 136 (379)
..+|+.+.|.+... .|+||+.|..|+||-++.+.. ...+..|...|+.+.|+|+|+.||+|+.++.+.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 34799999998765 899999999999998765432 23456688899999999999999999999999999
Q ss_pred EcCCCCC----C-----CCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCcc
Q 016974 137 NLNSPTD----K-----DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA 207 (379)
Q Consensus 137 ~~~~~~~----~-----~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~ 207 (379)
....-.. . ...+.+.+.+.+|...|+.++|+|++ .++++++.|+++++||+..|.....+ ..|..
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~l~~~~-----~dh~~ 166 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQLLAIL-----DDHEH 166 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC-ceeeeeeccceEEEEEeccceeEeec-----ccccc
Confidence 8762110 1 12244567788999999999999975 68999999999999999999877766 67888
Q ss_pred CeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccce--E--EE---ec-----------ccC----CeeEEEEccCCCEE
Q 016974 208 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV--R--TF---HG-----------HEG----DVNTVKFFPDGNRF 265 (379)
Q Consensus 208 ~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~--~--~~---~~-----------h~~----~v~~v~~sp~g~~l 265 (379)
.+..++|.| -++++++-+.|...+.+++....... . .+ .+ |.. -...++|+|+|..|
T Consensus 167 yvqgvawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~ll 245 (434)
T KOG1009|consen 167 YVQGVAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLL 245 (434)
T ss_pred ccceeecch-hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEE
Confidence 999999997 45688888888877777654221100 0 00 00 111 24568999999998
Q ss_pred EEeeC----CCeE-----EEEECCCCc-eeEEEeeccCCCCCCCeEEEEEcc-----------------CCCEEEEEEec
Q 016974 266 GTGSD----DGTC-----RLFDIRTGH-QLQVYYQQHGENEIPHVTSIAFSI-----------------SGRLLFAGYSN 318 (379)
Q Consensus 266 ~s~s~----D~~i-----~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~fs~-----------------~g~~l~sg~~d 318 (379)
++.+. ++.+ .+|+-...+ ++.. ......+...+.|+| --+++++-...
T Consensus 246 vtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~-----lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~ 320 (434)
T KOG1009|consen 246 VTPAGLFKVGGGVFRNTSYVFSRKDLKRPAAR-----LPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK 320 (434)
T ss_pred EcccceeeeCCceeeceeEeeccccccCceee-----cCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec
Confidence 87642 2222 333321110 0000 011111222222221 12344444455
Q ss_pred CcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 319 GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 319 g~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
..|++||..+..+..... +-|-.+|+.++|++||.+|+..|.||.+.+-.|+.
T Consensus 321 ~svyvydtq~~~P~~~v~---nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~ 373 (434)
T KOG1009|consen 321 NSVYVYDTQTLEPLAVVD---NIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEP 373 (434)
T ss_pred ceEEEeccccccceEEEe---eeeeeeecceeecCCCcEEEEeccCCceEEEEEcc
Confidence 589999988876655443 55888999999999999999999999987766654
No 152
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.8e-23 Score=181.40 Aligned_cols=303 Identities=17% Similarity=0.347 Sum_probs=231.3
Q ss_pred eeccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEee-cCCcceEEEEECCC--CCEEEEeeCCCcEEEE
Q 016974 60 CRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK-LPCAWVMTCAFSPT--GQSVACGGLDSVCSIF 136 (379)
Q Consensus 60 ~~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~--g~~l~~~~~d~~i~iw 136 (379)
...|.+|.+.|..|.|+..|..|+|||.|..|.+||+..++....+. +|+..|....|-|. .+.+++.+.||++++=
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 45788999999999999999999999999999999999888776654 67777777778775 4689999999999988
Q ss_pred EcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCcc---CeEEEE
Q 016974 137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA---DVLSVS 213 (379)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~---~v~~~~ 213 (379)
.+.... ...-...+..|.+.|..++..|+....|++++.|+.+.-.|++++.....+.. ...+.. ...+++
T Consensus 215 ~i~~t~----~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~c--r~~~~~~~v~L~~Ia 288 (559)
T KOG1334|consen 215 EILETG----YVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVC--READEKERVGLYTIA 288 (559)
T ss_pred eecccc----ceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeee--eccCCccceeeeeEe
Confidence 776432 22223446679999999999999888899999999999999988755444331 233333 578889
Q ss_pred EeCCCCcEEEEecCCCcEEEEEccCCccc-----eEEEec------ccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCC
Q 016974 214 ISGSNSRMFVSGSCDSTARLWDTRVASRA-----VRTFHG------HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG 282 (379)
Q Consensus 214 ~~~~~~~~l~sg~~d~~i~vwd~~~~~~~-----~~~~~~------h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~ 282 (379)
..|.+...|++|+.|..+++||.+..... +..+-. ..-.|++++|+.++.-|.+.-.|--|.+|.-..+
T Consensus 289 ~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~ 368 (559)
T KOG1334|consen 289 VDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMG 368 (559)
T ss_pred cCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccc
Confidence 99999999999999999999998753221 222211 2235899999988777777777888999964322
Q ss_pred ce------------eEEEeeccCCCCCCCeEEEEE-ccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEE
Q 016974 283 HQ------------LQVYYQQHGENEIPHVTSIAF-SISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCL 349 (379)
Q Consensus 283 ~~------------~~~~~~~~~~~~~~~v~~~~f-s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~ 349 (379)
.. ++..+..|.. ...|..+.| -|...|+++|++-|.|.||+..+++.+.-+. +-..-|+||
T Consensus 369 ~G~~p~~~s~~~~~~k~vYKGHrN--~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Me----gDr~VVNCL 442 (559)
T KOG1334|consen 369 DGSEPDPSSPREQYVKRVYKGHRN--SRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFME----GDRHVVNCL 442 (559)
T ss_pred cCCCCCCCcchhhccchhhccccc--ccccceeeeccCccceEEecCccceEEEEecchhHHHHHhh----cccceEecc
Confidence 21 1221223322 224777774 6788999999999999999988887766553 333389999
Q ss_pred EECCCCCeEEEeeCCCcEEEEecCc
Q 016974 350 GLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 350 ~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
.=+|--..|||++.|.-||||....
T Consensus 443 EpHP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 443 EPHPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred CCCCCCchhhccCCccceeeecCCc
Confidence 9999999999999999999998754
No 153
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2.8e-23 Score=198.29 Aligned_cols=289 Identities=17% Similarity=0.303 Sum_probs=212.5
Q ss_pred EEEeeCCCC-eEEEE----------cCCCcEEEEECC--CCc----eeeEeecCCcceEEEEECCCCCE----EEEeeCC
Q 016974 72 SLDWTSERN-RIVSA----------SQDGRLIVWNAL--TSQ----KTHAIKLPCAWVMTCAFSPTGQS----VACGGLD 130 (379)
Q Consensus 72 ~~~~~~~~~-~l~s~----------s~D~~v~iwd~~--~~~----~~~~~~~~~~~v~~~~~s~~g~~----l~~~~~d 130 (379)
.++|+|++. ++++| |.+.++-||.+. +.. ....+. .......++|.+.|.. |+.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence 467888875 44443 445566666543 222 111111 1234567889988765 8999999
Q ss_pred CcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeE
Q 016974 131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL 210 (379)
Q Consensus 131 ~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~ 210 (379)
|.|.+||...- ...+..+.......|++.|..+.|++..+++|++|+.||.|.|||+.........+ .......|.
T Consensus 90 G~I~ly~p~~~-~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~---~~~~~~eI~ 165 (1049)
T KOG0307|consen 90 GNIVLYDPASI-IANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG---SQAPPSEIK 165 (1049)
T ss_pred CceEEecchhh-ccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC---CCCCcccce
Confidence 99999998753 12234455667788999999999999998899999999999999998643222221 123457899
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccC--CeeEEEEccCC-CEEEEeeCCC---eEEEEECCCCce
Q 016974 211 SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG--DVNTVKFFPDG-NRFGTGSDDG---TCRLFDIRTGHQ 284 (379)
Q Consensus 211 ~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~--~v~~v~~sp~g-~~l~s~s~D~---~i~iwd~~~~~~ 284 (379)
+++|+......|++++.+|.+-|||++..+ .+-.+..|.. .+..++|+|+. ..++++++|. .|.+||+|.-..
T Consensus 166 ~lsWNrkvqhILAS~s~sg~~~iWDlr~~~-pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass 244 (1049)
T KOG0307|consen 166 CLSWNRKVSHILASGSPSGRAVIWDLRKKK-PIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS 244 (1049)
T ss_pred EeccchhhhHHhhccCCCCCceeccccCCC-cccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC
Confidence 999998888999999999999999999763 4434444433 47789999974 4577776554 599999885332
Q ss_pred -eEEEeeccCCCCCCCeEEEEEccCC-CEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCC-eEEEe
Q 016974 285 -LQVYYQQHGENEIPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS-ALCTG 361 (379)
Q Consensus 285 -~~~~~~~~~~~~~~~v~~~~fs~~g-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~-~l~s~ 361 (379)
++.+ +.|...|.++.|++.+ .+|++++.|+.|.+|+..+++.+..+. .....+..+.|.|..- .++.+
T Consensus 245 P~k~~-----~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p----~~~nW~fdv~w~pr~P~~~A~a 315 (1049)
T KOG0307|consen 245 PLKIL-----EGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP----AQGNWCFDVQWCPRNPSVMAAA 315 (1049)
T ss_pred chhhh-----cccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC----CCCcceeeeeecCCCcchhhhh
Confidence 2222 2234569999999977 899999999999999999999888774 2456789999998765 78889
Q ss_pred eCCCcEEEEecCce
Q 016974 362 SWDTNLKIWAFGGY 375 (379)
Q Consensus 362 s~D~~i~vw~~~~~ 375 (379)
|-||.|-|+.+.+.
T Consensus 316 sfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 316 SFDGKISIYSLQGT 329 (1049)
T ss_pred eeccceeeeeeecC
Confidence 99999999998773
No 154
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1.5e-21 Score=184.67 Aligned_cols=306 Identities=17% Similarity=0.257 Sum_probs=216.3
Q ss_pred ccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecC---CcceEEEEECC--CCCEEEEeeCCCcEEEE
Q 016974 62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLP---CAWVMTCAFSP--TGQSVACGGLDSVCSIF 136 (379)
Q Consensus 62 ~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~---~~~v~~~~~s~--~g~~l~~~~~d~~i~iw 136 (379)
...+..++-..+.|+|=...++++...-.|++||.+.++....+..+ ...|..+.+-. |..++++++.||.|+||
T Consensus 1059 ~~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIw 1138 (1387)
T KOG1517|consen 1059 FMTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIW 1138 (1387)
T ss_pred HHhcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEe
Confidence 34444555566778887778888887778999999998887666543 35577776643 45689999999999999
Q ss_pred EcCCCCCCCCCc-----ceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEE
Q 016974 137 NLNSPTDKDGNL-----PVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLS 211 (379)
Q Consensus 137 ~~~~~~~~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~ 211 (379)
+--.......++ .+...+.+-.+.-.-+.|-... .+|++++.-..|+|||.........++ .+....+++
T Consensus 1139 k~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~-G~Ll~tGd~r~IRIWDa~~E~~~~diP----~~s~t~vTa 1213 (1387)
T KOG1517|consen 1139 KDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQS-GHLLVTGDVRSIRIWDAHKEQVVADIP----YGSSTLVTA 1213 (1387)
T ss_pred cccccccCCceeEEeeccccccCccCCCCCeeeehhhhC-CeEEecCCeeEEEEEecccceeEeecc----cCCCcccee
Confidence 854332111111 0111112222222335676544 467777778999999998876655543 334456777
Q ss_pred EEEeCCCCcEEEEecCCCcEEEEEccCCcc--ceEEEecccCC--eeEEEEccCCCE-EEEeeCCCeEEEEECCCCceeE
Q 016974 212 VSISGSNSRMFVSGSCDSTARLWDTRVASR--AVRTFHGHEGD--VNTVKFFPDGNR-FGTGSDDGTCRLFDIRTGHQLQ 286 (379)
Q Consensus 212 ~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~--~~~~~~~h~~~--v~~v~~sp~g~~-l~s~s~D~~i~iwd~~~~~~~~ 286 (379)
+..+-..+++++.|-.||.||+||.|.... .+...+.|+.. |..+.+.+.|.. |++||.||.|++||++... ..
T Consensus 1214 LS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~-~e 1292 (1387)
T KOG1517|consen 1214 LSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS-KE 1292 (1387)
T ss_pred ecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCc-cc
Confidence 777666788999999999999999886543 56777889887 999999987655 9999999999999999742 22
Q ss_pred EEeeccCCCC-CCCeEEEEEccCCCEEEEEEecCcEEEEeCCCce--EEEecccccCCccCceeEEEECCCCCeEEEeeC
Q 016974 287 VYYQQHGENE-IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK--VVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 363 (379)
Q Consensus 287 ~~~~~~~~~~-~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~--~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~ 363 (379)
.+.....+.+ .+..+++..+++...+|+|+. +.|.||++.... .+..-..+.....+.+.|++|+|.--.||.|+.
T Consensus 1293 ~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~ 1371 (1387)
T KOG1517|consen 1293 TFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSA 1371 (1387)
T ss_pred ccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccC
Confidence 2222111111 124889999999999999998 999999975432 122223344445667899999999999999999
Q ss_pred CCcEEEEecCc
Q 016974 364 DTNLKIWAFGG 374 (379)
Q Consensus 364 D~~i~vw~~~~ 374 (379)
|.+|.||....
T Consensus 1372 Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1372 DSTVSIYSCEK 1382 (1387)
T ss_pred CceEEEeecCC
Confidence 99999998765
No 155
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.90 E-value=1.5e-21 Score=162.53 Aligned_cols=282 Identities=19% Similarity=0.278 Sum_probs=197.5
Q ss_pred EEEEEeeCCCCeEEEEcCCCcEEEEECCCC-------ce-----eeEeec-CCcceEEEEE-------CCCCCEEEEeeC
Q 016974 70 VYSLDWTSERNRIVSASQDGRLIVWNALTS-------QK-----THAIKL-PCAWVMTCAF-------SPTGQSVACGGL 129 (379)
Q Consensus 70 v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~-------~~-----~~~~~~-~~~~v~~~~~-------s~~g~~l~~~~~ 129 (379)
...+.|+|||.-|++-+.|..+.+|++-.. .. ...++- ...-|...+| -|+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 346889999999999999999999987321 10 011111 1233555554 377889999999
Q ss_pred CCcEEEEEcCCCCCCCCCcceeeeecccccce---EEEEEecCCCceEEEeeCCCeEEEeec-CCCeeEEEecCc--ccc
Q 016974 130 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYV---SCCQYVPDEDTHLITSSGDQTCVLWDI-TTGLRTSVFGGE--FQS 203 (379)
Q Consensus 130 d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v---~~~~~~~~~~~~l~s~~~d~~i~~wd~-~~~~~~~~~~~~--~~~ 203 (379)
|.-|++||.-+. ++......-.|.+.+ .+++|+|++. .| -++..+.|+++|+ +.|..-..+... ...
T Consensus 132 ~~PIh~wdaftG-----~lraSy~~ydh~de~taAhsL~Fs~DGe-ql-faGykrcirvFdt~RpGr~c~vy~t~~~~k~ 204 (406)
T KOG2919|consen 132 DQPIHLWDAFTG-----KLRASYRAYDHQDEYTAAHSLQFSPDGE-QL-FAGYKRCIRVFDTSRPGRDCPVYTTVTKGKF 204 (406)
T ss_pred cCceeeeecccc-----ccccchhhhhhHHhhhhheeEEecCCCC-eE-eecccceEEEeeccCCCCCCcchhhhhcccc
Confidence 999999998653 222222223344433 5789999875 34 3568899999998 444221111100 012
Q ss_pred CCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeC-CCeEEEEECCCC
Q 016974 204 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DGTCRLFDIRTG 282 (379)
Q Consensus 204 ~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~-D~~i~iwd~~~~ 282 (379)
+..+-+.+++++|.+...++.|+....+-|+.-.. ..++..+-+|.+.|+.++|.++|+.|.+|+. |-.|-.||+|..
T Consensus 205 gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~-~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~ 283 (406)
T KOG2919|consen 205 GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG-RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS 283 (406)
T ss_pred cccceeeeeeccCCCCcceeeecccceeeeEecCC-CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc
Confidence 33556788899999998999999988888876543 4678888899999999999999999999984 778999999975
Q ss_pred ceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCC-ceEEEecccccCCccCceeEEEECCCCCeEEEe
Q 016974 283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL-AKVVLNLGSLQNSHEGRITCLGLSADGSALCTG 361 (379)
Q Consensus 283 ~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~ 361 (379)
+....-...+..+ ...-.-....|+|++|++|+.||.|++||+.. +..+..+ ..|+..|+.++++|--.++|++
T Consensus 284 ~~pv~~L~rhv~~-TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~----~~~sd~vNgvslnP~mpilats 358 (406)
T KOG2919|consen 284 RDPVYALERHVGD-TNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVT----GNYSDTVNGVSLNPIMPILATS 358 (406)
T ss_pred cchhhhhhhhccC-ccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccc----ccccccccceecCcccceeeec
Confidence 4332111112111 11223456679999999999999999999876 4433333 4678899999999998888888
Q ss_pred eCC
Q 016974 362 SWD 364 (379)
Q Consensus 362 s~D 364 (379)
|..
T Consensus 359 sGq 361 (406)
T KOG2919|consen 359 SGQ 361 (406)
T ss_pred cCc
Confidence 765
No 156
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.90 E-value=1.4e-19 Score=168.18 Aligned_cols=291 Identities=33% Similarity=0.573 Sum_probs=224.3
Q ss_pred ccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCc-eeeEeecCCc-ceEEEEE-CCCCC-EEEEeeC-CCcEEEE
Q 016974 62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ-KTHAIKLPCA-WVMTCAF-SPTGQ-SVACGGL-DSVCSIF 136 (379)
Q Consensus 62 ~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~-~v~~~~~-s~~g~-~l~~~~~-d~~i~iw 136 (379)
.+.+|...+.++.+.+.+..++.++.|+.+.+|+...+. ....+..... .+..+.+ ++++. .++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 567899999999999999999999999999999998776 5666655332 5666666 88887 5555455 9999999
Q ss_pred EcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeC-CCeEEEeecCCCeeEEEecCccccCCccCeEEEEEe
Q 016974 137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS 215 (379)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 215 (379)
+... .......+.+|...|..+.|+|++. .+++++. |+.+++|++..+.....+ .+|...+.++.+.
T Consensus 140 ~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~ 207 (466)
T COG2319 140 DLST------PGKLIRTLEGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGKPLSTL-----AGHTDPVSSLAFS 207 (466)
T ss_pred EecC------CCeEEEEEecCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCceEEee-----ccCCCceEEEEEc
Confidence 9874 1124456778999999999999865 6777775 999999999875555554 4588999999999
Q ss_pred CCCCc-EEEEecCCCcEEEEEccCCccceE-EEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCce-eEEEeecc
Q 016974 216 GSNSR-MFVSGSCDSTARLWDTRVASRAVR-TFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ-LQVYYQQH 292 (379)
Q Consensus 216 ~~~~~-~l~sg~~d~~i~vwd~~~~~~~~~-~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~-~~~~~~~~ 292 (379)
+ ++. ++++++.|+.|++||.... .... .+.+|...+ ...|+|++.++++++.|+.+++|+++.... +... ..
T Consensus 208 ~-~~~~~~~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~- 282 (466)
T COG2319 208 P-DGGLLIASGSSDGTIRLWDLSTG-KLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL-SG- 282 (466)
T ss_pred C-CcceEEEEecCCCcEEEEECCCC-cEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE-ec-
Confidence 5 454 5666699999999988733 4444 577887775 448999998999999999999999987665 3333 11
Q ss_pred CCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEe-eCCCcEEEEe
Q 016974 293 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG-SWDTNLKIWA 371 (379)
Q Consensus 293 ~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~-s~D~~i~vw~ 371 (379)
+...+.++.|+|++..+++++.|+.+.+||........... ...|...+..+.|.+++..++.+ ..|+.+++|+
T Consensus 283 ---~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 357 (466)
T COG2319 283 ---HSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT--LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357 (466)
T ss_pred ---CCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee--ecccCCceEEEEECCCCCEEEEeecCCCcEEeee
Confidence 24568999999999999889888899999987766555442 13577789999994343556655 7889999998
Q ss_pred cCc
Q 016974 372 FGG 374 (379)
Q Consensus 372 ~~~ 374 (379)
+..
T Consensus 358 ~~~ 360 (466)
T COG2319 358 LRT 360 (466)
T ss_pred cCC
Confidence 765
No 157
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.90 E-value=3.4e-22 Score=164.03 Aligned_cols=288 Identities=17% Similarity=0.246 Sum_probs=197.0
Q ss_pred EeeccccccccEEEEEeeCC-CCeEEEEcCC-------CcEEEEECCCCc---------eeeEee-cCCcceEEEEECCC
Q 016974 59 CCRTLQGHAGKVYSLDWTSE-RNRIVSASQD-------GRLIVWNALTSQ---------KTHAIK-LPCAWVMTCAFSPT 120 (379)
Q Consensus 59 ~~~~l~gH~~~v~~~~~~~~-~~~l~s~s~D-------~~v~iwd~~~~~---------~~~~~~-~~~~~v~~~~~s~~ 120 (379)
....|..|.+.|+.++-+|- .+.|+|+-.| -.+.||.+.... ++..+. .+.+.+.++-|.|+
T Consensus 55 ~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn 134 (370)
T KOG1007|consen 55 LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN 134 (370)
T ss_pred hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC
Confidence 45678889999999999984 4567776442 247899875332 222222 23457899999999
Q ss_pred CCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCc
Q 016974 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 200 (379)
Q Consensus 121 g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 200 (379)
+..+++.. |..|.+|++..........+. .....|....++-+|+|.-+...+....|+++..||+++..+...+
T Consensus 135 s~klasm~-dn~i~l~~l~ess~~vaev~s-s~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI--- 209 (370)
T KOG1007|consen 135 SDKLASMD-DNNIVLWSLDESSKIVAEVLS-SESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSI--- 209 (370)
T ss_pred CCeeEEec-cCceEEEEcccCcchheeecc-cccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcch---
Confidence 99999876 788999999865432222111 1122356667888999954445566678999999999987655444
Q ss_pred cccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccC-CCEEEEeeCCCeEEEEEC
Q 016974 201 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD-GNRFGTGSDDGTCRLFDI 279 (379)
Q Consensus 201 ~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~-g~~l~s~s~D~~i~iwd~ 279 (379)
..+|...|..++|+|..+.+|+||+.||.||+||+|..+.+++.+.+|..+|++|.|+|. .+.|++||.|..|.+|..
T Consensus 210 -~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca 288 (370)
T KOG1007|consen 210 -EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCA 288 (370)
T ss_pred -hhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEec
Confidence 367888899999999999999999999999999999998899999999999999999995 456789999999999986
Q ss_pred CCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCC-eE
Q 016974 280 RTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS-AL 358 (379)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~-~l 358 (379)
..-..-. .+.|..+-.-.--......++ -+. ...+.++ ..|+..|++++||.-.. .+
T Consensus 289 ~svSSE~---------------qi~~~~dese~e~~dseer~k--pL~-dg~l~ty----dehEDSVY~~aWSsadPWiF 346 (370)
T KOG1007|consen 289 SSVSSEQ---------------QIEFEDDESESEDEDSEERVK--PLQ-DGQLETY----DEHEDSVYALAWSSADPWIF 346 (370)
T ss_pred ccccccc---------------ccccccccccCcchhhHHhcc--ccc-ccccccc----cccccceEEEeeccCCCeeE
Confidence 5321000 111111000000000000011 000 0111111 46999999999987555 45
Q ss_pred EEeeCCCcEEEEecCc
Q 016974 359 CTGSWDTNLKIWAFGG 374 (379)
Q Consensus 359 ~s~s~D~~i~vw~~~~ 374 (379)
||-|.||.+-|=.+-.
T Consensus 347 ASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 347 ASLSYDGRVIISSVPR 362 (370)
T ss_pred EEeccCceEEeecCCh
Confidence 6889999998866544
No 158
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.90 E-value=6e-22 Score=171.86 Aligned_cols=269 Identities=18% Similarity=0.219 Sum_probs=192.0
Q ss_pred CCceeeEeecCCcceEEEEECCCC--CEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEE
Q 016974 98 TSQKTHAIKLPCAWVMTCAFSPTG--QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLI 175 (379)
Q Consensus 98 ~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 175 (379)
+-.....++.+...|.+++|+|.. +.+++|..-|+|-+||+..... ...-...+..|.+.|.++.|+|.+...++
T Consensus 175 ~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~---d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ 251 (498)
T KOG4328|consen 175 DYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK---DKDGVYLFTPHSGPVSGLKFSPANTSQIY 251 (498)
T ss_pred cceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC---ccCceEEeccCCccccceEecCCChhhee
Confidence 333445566677889999999975 5788888999999999963211 11223456789999999999999988999
Q ss_pred EeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeE
Q 016974 176 TSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNT 255 (379)
Q Consensus 176 s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~ 255 (379)
+.|.||+|++-|++......++.. ........+++++..+...++....+ ...+||.+..+.....+.-|...|++
T Consensus 252 ssSyDGtiR~~D~~~~i~e~v~s~---~~d~~~fs~~d~~~e~~~vl~~~~~G-~f~~iD~R~~~s~~~~~~lh~kKI~s 327 (498)
T KOG4328|consen 252 SSSYDGTIRLQDFEGNISEEVLSL---DTDNIWFSSLDFSAESRSVLFGDNVG-NFNVIDLRTDGSEYENLRLHKKKITS 327 (498)
T ss_pred eeccCceeeeeeecchhhHHHhhc---CccceeeeeccccCCCccEEEeeccc-ceEEEEeecCCccchhhhhhhcccce
Confidence 999999999999986532222211 11234456677776666665544444 99999999887666667778899999
Q ss_pred EEEccC-CCEEEEeeCCCeEEEEECCCCceeEE-EeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCC-ceEE
Q 016974 256 VKFFPD-GNRFGTGSDDGTCRLFDIRTGHQLQV-YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL-AKVV 332 (379)
Q Consensus 256 v~~sp~-g~~l~s~s~D~~i~iwd~~~~~~~~~-~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~-~~~~ 332 (379)
|+++|- ..+|||+|.|++.+|||++....-.. +. +.-.+...|.++.|||+|-.|++-+.|..|+|||..- +...
T Consensus 328 v~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~l--st~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~ 405 (498)
T KOG4328|consen 328 VALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFL--STLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKD 405 (498)
T ss_pred eecCCCCchheeecccCcceeeeehhhhcCCCCcce--ecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccC
Confidence 999994 56789999999999999986432111 11 1122344699999999998899999999999999731 1111
Q ss_pred EecccccC-----CccCceeEEEECCCCCeEEEeeCCCcEEEEecCcee
Q 016974 333 LNLGSLQN-----SHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYR 376 (379)
Q Consensus 333 ~~~~~~~~-----~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~~~ 376 (379)
..+..... .|-. ....+|.||.+++++|-.-..|-|++-.+.+
T Consensus 406 ~p~~~I~Hn~~t~RwlT-~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 406 EPLGTIPHNNRTGRWLT-PFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred CccceeeccCccccccc-chhheeCCCccEEEEeccCcceeEEcCCCCE
Confidence 11111111 1222 3456899999999999999899999866644
No 159
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.1e-22 Score=194.20 Aligned_cols=248 Identities=16% Similarity=0.252 Sum_probs=196.8
Q ss_pred cEEEEEeeCCCCe----EEEEcCCCcEEEEECCC---Cc---eeeEeecCCcceEEEEECCCCC-EEEEeeCCCcEEEEE
Q 016974 69 KVYSLDWTSERNR----IVSASQDGRLIVWNALT---SQ---KTHAIKLPCAWVMTCAFSPTGQ-SVACGGLDSVCSIFN 137 (379)
Q Consensus 69 ~v~~~~~~~~~~~----l~s~s~D~~v~iwd~~~---~~---~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~ 137 (379)
.-+.++|.+.|.. ||.|..||+|.+||... +. .+.+...|.+.|..+.|++... .||+|+.||.|.|||
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWD 145 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWD 145 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEec
Confidence 4678999987765 89999999999999764 22 2355677899999999999765 999999999999999
Q ss_pred cCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCC
Q 016974 138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS 217 (379)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 217 (379)
++....+... .-..-...|.+++|+......|++++.+|.+.|||++....+..+... +....+..+.|+|.
T Consensus 146 lnn~~tP~~~-----~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~---~~~~~~S~l~WhP~ 217 (1049)
T KOG0307|consen 146 LNKPETPFTP-----GSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDT---PGRMHCSVLAWHPD 217 (1049)
T ss_pred cCCcCCCCCC-----CCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccC---CCccceeeeeeCCC
Confidence 9875432111 011234679999998776678999999999999999876544433211 11134778999998
Q ss_pred CCcEEEEecCCC---cEEEEEccCCccceEEEecccCCeeEEEEccCC-CEEEEeeCCCeEEEEECCCCceeEEEeeccC
Q 016974 218 NSRMFVSGSCDS---TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG-NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG 293 (379)
Q Consensus 218 ~~~~l~sg~~d~---~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g-~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~ 293 (379)
+...+++++.|. .|.+||+|....+++++++|...|.++.|++.. .+++|++.|+.|.+|+.++++.+..+-.
T Consensus 218 ~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~--- 294 (1049)
T KOG0307|consen 218 HATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA--- 294 (1049)
T ss_pred CceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC---
Confidence 887787777654 699999999888999999999999999999954 8999999999999999999988766532
Q ss_pred CCCCCCeEEEEEccCCC-EEEEEEecCcEEEEeCCCc
Q 016974 294 ENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLA 329 (379)
Q Consensus 294 ~~~~~~v~~~~fs~~g~-~l~sg~~dg~i~iwd~~~~ 329 (379)
...++..+.|+|... .+++++.||.|.|+.+...
T Consensus 295 --~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 295 --QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred --CCcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 234789999999877 7788899999999986543
No 160
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.1e-21 Score=167.33 Aligned_cols=303 Identities=14% Similarity=0.202 Sum_probs=217.0
Q ss_pred eEeeccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCC------CceeeEeec-CCcceEEEEECCCCCEEEEeeCC
Q 016974 58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT------SQKTHAIKL-PCAWVMTCAFSPTGQSVACGGLD 130 (379)
Q Consensus 58 ~~~~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~------~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~d 130 (379)
.|.+-+.+|.+.|+++.|+.++++|++|+.|..+++|++.. .+.+..... |...|.+++|...++++.+|+.+
T Consensus 47 ~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 47 FCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW 126 (609)
T ss_pred hhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence 35667889999999999999999999999999999999743 233333333 33679999999999999999999
Q ss_pred CcEEEEEcCCCCCCCCCcceeeeeccc---ccceEEEEEecCCCceEEEeeCCCeEEEeecCCCe-eEEEecCccccCCc
Q 016974 131 SVCSIFNLNSPTDKDGNLPVSRMLSGH---KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-RTSVFGGEFQSGHT 206 (379)
Q Consensus 131 ~~i~iw~~~~~~~~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~~h~ 206 (379)
+++.+.|+.+.. . .-...| .+.|+.+..+|. ++.|++.+.++.|.+||.+... ....+ +.....
T Consensus 127 ~~VI~HDiEt~q-------s-i~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~~~~~---~~AN~~ 194 (609)
T KOG4227|consen 127 GTVIKHDIETKQ-------S-IYVANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNPISLV---LPANSG 194 (609)
T ss_pred ceeEeeecccce-------e-eeeecccCcccceeecccCCC-CceEEEEecCceEEEEeccCCCCCCcee---eecCCC
Confidence 999999987532 1 112334 358999999998 5789999999999999997643 11111 001122
Q ss_pred cCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecc---cC---CeeEEEEccCCCEEEEeeCCCeEEEEECC
Q 016974 207 ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH---EG---DVNTVKFFPDGNRFGTGSDDGTCRLFDIR 280 (379)
Q Consensus 207 ~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h---~~---~v~~v~~sp~g~~l~s~s~D~~i~iwd~~ 280 (379)
....++.|+|....++++.+.-+.+.+||.+....++....+. .. .-.++.|+|+|+.|.+--....--+||+-
T Consensus 195 ~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~ 274 (609)
T KOG4227|consen 195 KNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFI 274 (609)
T ss_pred ccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeee
Confidence 4567788999889999999999999999998765443222111 11 12568899999999876555555677876
Q ss_pred CCceeEEEeeccCC---CCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCC----------ce---------EEEecccc
Q 016974 281 TGHQLQVYYQQHGE---NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL----------AK---------VVLNLGSL 338 (379)
Q Consensus 281 ~~~~~~~~~~~~~~---~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~----------~~---------~~~~~~~~ 338 (379)
+.++. .+...|.. .....+.+++|--|- .+++|+.+-.|++|.+.. +. .+..-...
T Consensus 275 S~R~~-V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~V 352 (609)
T KOG4227|consen 275 SQRCF-VLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTV 352 (609)
T ss_pred cccce-eEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEE
Confidence 54332 22222222 123456788886554 599999999999997521 11 11000112
Q ss_pred cCCccCceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 339 QNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 339 ~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
.++|..-++.+.|+|....|++.+-.+.+|||.-.+
T Consensus 353 LrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r 388 (609)
T KOG4227|consen 353 LRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHR 388 (609)
T ss_pred EecccccccceeecCCcceEeccchhhheecccccc
Confidence 368999999999999999999999999999997543
No 161
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.89 E-value=4.6e-22 Score=161.29 Aligned_cols=291 Identities=15% Similarity=0.243 Sum_probs=196.7
Q ss_pred ccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEee-cCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCC
Q 016974 62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK-LPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS 140 (379)
Q Consensus 62 ~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~ 140 (379)
.|++|.+.|+++.|-.++ +|.+|..-|.|++|++.+......++ .+...+..+..-|+ ..+.+-+.|..+.+|++..
T Consensus 9 vLRp~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~ 86 (323)
T KOG0322|consen 9 VLRPHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAY 86 (323)
T ss_pred Eeccccchheehhhccch-hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccC
Confidence 577999999999998765 58999999999999999988888887 45566777777776 6788899999999999874
Q ss_pred CCCCCCCcceeeeecccccceEEEEEecC-----CC---ceEEEee--CCCeEEEeecCCCeeEEEecCccccCCccCeE
Q 016974 141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPD-----ED---THLITSS--GDQTCVLWDITTGLRTSVFGGEFQSGHTADVL 210 (379)
Q Consensus 141 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----~~---~~l~s~~--~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~ 210 (379)
.. ...-|.-.+.++.|.+. .. ..++.-+ .|. +.+-|......+.. ..+-..+..+.+.
T Consensus 87 s~----------~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde-~h~~D~g~~tqv~i-~dd~~~~Klgsvm 154 (323)
T KOG0322|consen 87 SA----------FISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDE-THKQDGGDTTQVQI-ADDSERSKLGSVM 154 (323)
T ss_pred cc----------eEEEeeeeccccccccceeccCCCcchhheecCCcccch-hhhhccCccceeEc-cCchhccccCcee
Confidence 21 11122222333333221 10 0111110 011 11122211111111 1111223344555
Q ss_pred EEEEeC--CCCcEEEEecCCCcEEEEEccCCcc---------ceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEEC
Q 016974 211 SVSISG--SNSRMFVSGSCDSTARLWDTRVASR---------AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI 279 (379)
Q Consensus 211 ~~~~~~--~~~~~l~sg~~d~~i~vwd~~~~~~---------~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~ 279 (379)
+..+.. ...-+++.|-++|.+-+||+..... .......|..+|.++.|.+.-..=++|+.+..+..|++
T Consensus 155 c~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl 234 (323)
T KOG0322|consen 155 CQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSL 234 (323)
T ss_pred eeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeee
Confidence 554322 2233566788899999999976422 22234568999999999987777788898889999988
Q ss_pred CCCc-eeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeE
Q 016974 280 RTGH-QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSAL 358 (379)
Q Consensus 280 ~~~~-~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l 358 (379)
.... .++. .....-..+.|..+.+-||++.+|+++-|+.|+||...+......+ +.|.+.|++++|+||.+.+
T Consensus 235 ~~s~gslq~--~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVL----kyHsagvn~vAfspd~~lm 308 (323)
T KOG0322|consen 235 NHSTGSLQI--RKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVL----KYHSAGVNAVAFSPDCELM 308 (323)
T ss_pred ccccCcccc--cceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhh----hhhhcceeEEEeCCCCchh
Confidence 6431 1110 0000112245788999999999999999999999998888777666 6799999999999999999
Q ss_pred EEeeCCCcEEEEec
Q 016974 359 CTGSWDTNLKIWAF 372 (379)
Q Consensus 359 ~s~s~D~~i~vw~~ 372 (379)
|++|.|++|.+|++
T Consensus 309 AaaskD~rISLWkL 322 (323)
T KOG0322|consen 309 AAASKDARISLWKL 322 (323)
T ss_pred hhccCCceEEeeec
Confidence 99999999999985
No 162
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.1e-21 Score=162.81 Aligned_cols=283 Identities=16% Similarity=0.253 Sum_probs=195.1
Q ss_pred CeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECC--CCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeeccc
Q 016974 80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP--TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH 157 (379)
Q Consensus 80 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h 157 (379)
..+|++-..|+|++||..+++.+..++.+..-+..++|.. .+..+.+++.||+|++||++...+. ......+|
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~-----a~~~~~~~ 115 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES-----ARISWTQQ 115 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh-----hheeccCC
Confidence 5688888999999999999999999999888888888876 5678999999999999999864321 11223344
Q ss_pred cc-ceEEEEEecCCCceEEEee----CCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEE
Q 016974 158 KG-YVSCCQYVPDEDTHLITSS----GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 232 (379)
Q Consensus 158 ~~-~v~~~~~~~~~~~~l~s~~----~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~ 232 (379)
.+ +-.+++... .+..+++|. .|-.|.+||++..... -..+...|.+.|+.+.|+|++.++|+|||.||-|.
T Consensus 116 ~~~~f~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~---l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvn 191 (376)
T KOG1188|consen 116 SGTPFICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQL---LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVN 191 (376)
T ss_pred CCCcceEeeccC-cCCeEEeccccccCceEEEEEEeccccch---hhhhhhhccCcceeEEecCCCCCeEEeecccceEE
Confidence 42 333443322 234455554 3667999999875441 12234689999999999999999999999999999
Q ss_pred EEEccCCcc---ceEEEecccCCeeEEEEccCC-CEEEEeeCCCeEEEEECCCCceeEEEeeccC-------CCCCCCeE
Q 016974 233 LWDTRVASR---AVRTFHGHEGDVNTVKFFPDG-NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG-------ENEIPHVT 301 (379)
Q Consensus 233 vwd~~~~~~---~~~~~~~h~~~v~~v~~sp~g-~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~-------~~~~~~v~ 301 (379)
++|+....+ .+.++ .|...|.++.|+.++ +.|.+-+...+..+|+++.+.....+..+.. +-....+.
T Consensus 192 lfD~~~d~EeDaL~~vi-N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I 270 (376)
T KOG1188|consen 192 LFDTKKDNEEDALLHVI-NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVI 270 (376)
T ss_pred eeecCCCcchhhHHHhh-cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhhee
Confidence 999875422 22233 467789999998876 4578889999999999998764332221100 00011122
Q ss_pred EEEEcc-CCCEEEE-EEecCcEEEEeC---CCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecC
Q 016974 302 SIAFSI-SGRLLFA-GYSNGDCYVWDT---LLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 373 (379)
Q Consensus 302 ~~~fs~-~g~~l~s-g~~dg~i~iwd~---~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~ 373 (379)
.. .+| ++.+.+. |+.-++..++-+ ..+.....+..++.+|..-|.++.|...+.++.||+.||.+.+|...
T Consensus 271 ~~-~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 271 NE-HSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred ec-ccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 21 223 3334444 443555555532 23332233333446688889999999899999999999999999843
No 163
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.88 E-value=3.9e-21 Score=164.02 Aligned_cols=214 Identities=21% Similarity=0.317 Sum_probs=164.1
Q ss_pred eecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEec--CccccCCccCeEEEEEeCCCCcEEEEecCCCc
Q 016974 153 MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG--GEFQSGHTADVLSVSISGSNSRMFVSGSCDST 230 (379)
Q Consensus 153 ~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~ 230 (379)
.+.||++.|..+.|.|.+++.++|||.|.+|.+|++..+.....+. .....+|...|-.+.|+|...+.|+|++.|..
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4679999999999999999999999999999999987653322111 12236899999999999999999999999999
Q ss_pred EEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCC
Q 016974 231 ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR 310 (379)
Q Consensus 231 i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~ 310 (379)
|.+|++.+... +-.+. |..-|+++.|+.||.+|++.+.|..|||||.++++.+..-..+.+ ..-..+.|-.+|.
T Consensus 156 v~iWnv~tgea-li~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG----~k~~Raifl~~g~ 229 (472)
T KOG0303|consen 156 VSIWNVGTGEA-LITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEG----AKPARAIFLASGK 229 (472)
T ss_pred EEEEeccCCce-eeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccC----CCcceeEEeccCc
Confidence 99999997744 44455 999999999999999999999999999999999988765422211 1234667888999
Q ss_pred EEEEEE---ecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEE-eeCCCcEEEEecCc
Q 016974 311 LLFAGY---SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCT-GSWDTNLKIWAFGG 374 (379)
Q Consensus 311 ~l~sg~---~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s-~s~D~~i~vw~~~~ 374 (379)
++.+|. ++..+-+||..+-.....+..+ . -+..|.---|.+|.+.|.- |-.|+.||.|.+..
T Consensus 230 i~tTGfsr~seRq~aLwdp~nl~eP~~~~el-D-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 230 IFTTGFSRMSERQIALWDPNNLEEPIALQEL-D-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN 295 (472)
T ss_pred eeeeccccccccceeccCcccccCcceeEEe-c-cCCceEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence 666664 5778999996543322222222 1 2334555557888887764 56699999998865
No 164
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.88 E-value=8.5e-23 Score=188.69 Aligned_cols=253 Identities=22% Similarity=0.337 Sum_probs=190.4
Q ss_pred eEeeccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEE
Q 016974 58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFN 137 (379)
Q Consensus 58 ~~~~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~ 137 (379)
+.++.|.||...|+|+.|...|.++++|+.|..|+||...++.++...++|.+.+..++.+.++..++++|.|..|++|.
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 35667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCC
Q 016974 138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS 217 (379)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 217 (379)
+.... ....+.||+++|++++|+|- .+.+.||++++||.+-..+...- ..........+.++.+. .
T Consensus 261 l~~~~-------pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r~~~~~y~p-rp~~~~~~~~~~s~~~~-~ 326 (1113)
T KOG0644|consen 261 LPDGA-------PVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLEPRIYVP-RPLKFTEKDLVDSILFE-N 326 (1113)
T ss_pred cCCCc-------hHHHHhccccceeeeccCcc-----ccCCCCCceEeccccccccccCC-CCCCcccccceeeeecc-c
Confidence 86422 34568899999999999984 37789999999998721111110 00000000111111111 1
Q ss_pred CC-------------------------------------cEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEcc
Q 016974 218 NS-------------------------------------RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP 260 (379)
Q Consensus 218 ~~-------------------------------------~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp 260 (379)
++ .+.+++-.+-.+.+|++-.. ...+.+.+|...+..+.++|
T Consensus 327 ~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g-~l~H~l~ghsd~~yvLd~Hp 405 (1113)
T KOG0644|consen 327 NGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG-QLLHNLMGHSDEVYVLDVHP 405 (1113)
T ss_pred cccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccc-hhhhhhcccccceeeeeecC
Confidence 11 12233334445566665543 44566678999999999999
Q ss_pred CC-CEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCce
Q 016974 261 DG-NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK 330 (379)
Q Consensus 261 ~g-~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~ 330 (379)
-. ....+++.||+..|||+-.|-+++.+...+ ..+...+||++|+.++....-|.++|.....++
T Consensus 406 fn~ri~msag~dgst~iwdi~eg~pik~y~~gh-----~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 406 FNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH-----GKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred CCcHhhhhccCCCceEeeecccCCcceeeeccc-----ceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 54 455788999999999999998888776433 247788999999999999999999999765443
No 165
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.87 E-value=7.5e-21 Score=166.68 Aligned_cols=268 Identities=17% Similarity=0.220 Sum_probs=191.8
Q ss_pred EcCCCcEEEEECCCCceeeEee--cCCcceEEEEECCCCC-EEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccce
Q 016974 85 ASQDGRLIVWNALTSQKTHAIK--LPCAWVMTCAFSPTGQ-SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYV 161 (379)
Q Consensus 85 ~s~D~~v~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v 161 (379)
+|...++++||...-.....+- .....+.++.|..... .+++.+.|..+++|.-+.+ .+..|..+...|...
T Consensus 8 aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~---~~~Vp~~~k~~gd~~-- 82 (673)
T KOG4378|consen 8 ASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK---TPEVPRVRKLTGDNA-- 82 (673)
T ss_pred eccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCC---CCccceeeccccchH--
Confidence 3344469999986543222211 1122378888887664 4556677999999976543 233455555555432
Q ss_pred EEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCcc
Q 016974 162 SCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR 241 (379)
Q Consensus 162 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~ 241 (379)
.|++.... ..++++|+..+.|+|||++...+...+ .+|...|+.+.++. ...++|+++..|.|.|..+.+..+
T Consensus 83 ~Cv~~~s~-S~y~~sgG~~~~Vkiwdl~~kl~hr~l-----kdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~ 155 (673)
T KOG4378|consen 83 FCVACASQ-SLYEISGGQSGCVKIWDLRAKLIHRFL-----KDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQK 155 (673)
T ss_pred HHHhhhhc-ceeeeccCcCceeeehhhHHHHHhhhc-----cCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCcc
Confidence 22332222 257999999999999999865544433 68999999999986 556999999999999998876533
Q ss_pred ceEEEe-cccCCeeEEEEccCCCE-EEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCC-EEEEEEec
Q 016974 242 AVRTFH-GHEGDVNTVKFFPDGNR-FGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSN 318 (379)
Q Consensus 242 ~~~~~~-~h~~~v~~v~~sp~g~~-l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~-~l~sg~~d 318 (379)
...|. +....|.-+.|+|..+. |.+++++|+|.+||+....++..+...| ..+...++|+|... +|++-+.|
T Consensus 156 -tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~H----sAP~~gicfspsne~l~vsVG~D 230 (673)
T KOG4378|consen 156 -TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAH----SAPCRGICFSPSNEALLVSVGYD 230 (673)
T ss_pred -ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhc----cCCcCcceecCCccceEEEeccc
Confidence 23333 22445678999997654 6788999999999998776665554433 45678999999776 66777899
Q ss_pred CcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 319 GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 319 g~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
..|++||....+....+ ....|...++|+++|.+|+.|+..|.|..||+.+
T Consensus 231 kki~~yD~~s~~s~~~l-----~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 231 KKINIYDIRSQASTDRL-----TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRS 281 (673)
T ss_pred ceEEEeeccccccccee-----eecCCcceeeecCCceEEEeecCCceEEEEeccc
Confidence 99999998765544443 1344789999999999999999999999999876
No 166
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.87 E-value=3.3e-18 Score=158.84 Aligned_cols=292 Identities=31% Similarity=0.535 Sum_probs=216.2
Q ss_pred eeccccccc-cEEEEEe-eCCCC-eEEEEcC-CCcEEEEECCC-CceeeEeecCCcceEEEEECCCCCEEEEeeC-CCcE
Q 016974 60 CRTLQGHAG-KVYSLDW-TSERN-RIVSASQ-DGRLIVWNALT-SQKTHAIKLPCAWVMTCAFSPTGQSVACGGL-DSVC 133 (379)
Q Consensus 60 ~~~l~gH~~-~v~~~~~-~~~~~-~l~s~s~-D~~v~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-d~~i 133 (379)
...+.++.. .+..+.+ ++++. .++..+. |+.+++||... ......+..|...+..++|+|++..++.++. |+.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 180 (466)
T COG2319 101 IKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTI 180 (466)
T ss_pred EEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCce
Confidence 345555443 6777777 77777 5555455 99999999987 7788888899999999999999999888886 9999
Q ss_pred EEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEE-EecCccccCCccCeEEE
Q 016974 134 SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS-VFGGEFQSGHTADVLSV 212 (379)
Q Consensus 134 ~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~~h~~~v~~~ 212 (379)
++|++... .....+.+|...|.++.|+|++...+++++.|+.|++||...+.... .+ .+|.... ..
T Consensus 181 ~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~-----~~~~~~~-~~ 247 (466)
T COG2319 181 KLWDLRTG-------KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTL-----SGHSDSV-VS 247 (466)
T ss_pred EEEEcCCC-------ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeec-----CCCCcce-eE
Confidence 99998751 24456677999999999998765356666999999999988665554 23 4566554 32
Q ss_pred EEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeecc
Q 016974 213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 292 (379)
Q Consensus 213 ~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~ 292 (379)
.+.+ ++.++++++.|+.+++|+.+........+.+|...|.++.|+|++..+++++.|+.+++||..+........
T Consensus 248 ~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--- 323 (466)
T COG2319 248 SFSP-DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT--- 323 (466)
T ss_pred eECC-CCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee---
Confidence 5665 447888999999999999986644344446788999999999998999889999999999988776554443
Q ss_pred CCCCCCCeEEEEEccCCCEEEEE-EecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEE-eeCCCcEEEE
Q 016974 293 GENEIPHVTSIAFSISGRLLFAG-YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCT-GSWDTNLKIW 370 (379)
Q Consensus 293 ~~~~~~~v~~~~fs~~g~~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s-~s~D~~i~vw 370 (379)
...+...+..+.|.+++..++.+ ..|+.+.+|+.......... . ....+..+.+++ ...+.+ ++.++.+.+|
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 397 (466)
T COG2319 324 LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTL----E-GHSNVLSVSFSP-DGRVVSSGSTDGTVRLW 397 (466)
T ss_pred ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEe----c-CCceEEEEEECC-CCCEEEEecCCCceEEE
Confidence 11122257888884343556555 68889999998766522222 1 122288899988 555554 7899999999
Q ss_pred ecCc
Q 016974 371 AFGG 374 (379)
Q Consensus 371 ~~~~ 374 (379)
+...
T Consensus 398 ~~~~ 401 (466)
T COG2319 398 DLST 401 (466)
T ss_pred eccc
Confidence 9876
No 167
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=4.5e-21 Score=170.58 Aligned_cols=257 Identities=23% Similarity=0.317 Sum_probs=184.4
Q ss_pred eccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCC--------CceeeEeecCCcceEEEEECCCCCEEEEeeCCCc
Q 016974 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT--------SQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSV 132 (379)
Q Consensus 61 ~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~--------~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~ 132 (379)
.++..|.+.|..++|.+-...|++|+.||++++|+++. -+++.+++.|.++|.|+++.++++.+.+||-||+
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 37788999999999999889999999999999999832 2356788999999999999999999999999999
Q ss_pred EEEEEcCCCCCCCCC---cceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCe
Q 016974 133 CSIFNLNSPTDKDGN---LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADV 209 (379)
Q Consensus 133 i~iw~~~~~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v 209 (379)
|+.|++.....+... ......+.||++.|..+++++.. ..|++++.||++++|+...... ..++... ...--
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~-~~Llscs~DgTvr~w~~~~~~~-~~f~~~~---e~g~P 442 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK-DRLLSCSSDGTVRLWEPTEESP-CTFGEPK---EHGYP 442 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccc-cceeeecCCceEEeeccCCcCc-cccCCcc---ccCCc
Confidence 999988743322221 23456788999999999999875 4699999999999999865543 2232111 11122
Q ss_pred EEEEEeCCCCcEEEEecCCCcEEEEEccCCc--cceEEEe--c-----ccCCeeEEEEccCCCEEEEeeCCCeEEEEECC
Q 016974 210 LSVSISGSNSRMFVSGSCDSTARLWDTRVAS--RAVRTFH--G-----HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 280 (379)
Q Consensus 210 ~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~--~~~~~~~--~-----h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~ 280 (379)
.++++-.......++ +...+.+++.... ..+..+. + -...++.+.++|.+...+++..|+.|+++|..
T Consensus 443 lsvd~~ss~~a~~~~---s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~ 519 (577)
T KOG0642|consen 443 LSVDRTSSRPAHSLA---SFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNK 519 (577)
T ss_pred ceEeeccchhHhhhh---hcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccc
Confidence 334333222111111 1222222222110 1111111 1 12347888999999999999999999999999
Q ss_pred CCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCce
Q 016974 281 TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK 330 (379)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~ 330 (379)
+++.+..... +...++++++.|+|.+|++|+.||.+++|......
T Consensus 520 ~~~~l~s~~a-----~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 520 TGKILHSMVA-----HKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred ccccchheee-----ccceecceeecCCCceEEeecCCceeehhhccchh
Confidence 9887654322 34468999999999999999999999999865433
No 168
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=3e-20 Score=154.44 Aligned_cols=243 Identities=20% Similarity=0.260 Sum_probs=177.6
Q ss_pred eEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCC
Q 016974 112 VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG 191 (379)
Q Consensus 112 v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 191 (379)
..+|.|++.|.+||.|..||.+-|||+.+.. +.+++.+|.-+|.+++|++++ ..|+++|.|..|++||+..|
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-------iar~lsaH~~pi~sl~WS~dg-r~LltsS~D~si~lwDl~~g 97 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-------IARMLSAHVRPITSLCWSRDG-RKLLTSSRDWSIKLWDLLKG 97 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc-------hhhhhhccccceeEEEecCCC-CEeeeecCCceeEEEeccCC
Confidence 6899999999999999999999999998633 567889999999999999986 68999999999999999998
Q ss_pred eeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEec----c-cCCeeEEEEccCCCEEE
Q 016974 192 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG----H-EGDVNTVKFFPDGNRFG 266 (379)
Q Consensus 192 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~----h-~~~v~~v~~sp~g~~l~ 266 (379)
.+...+ -...+|....++|.+.+.++..-.+..-.+-++.... ...+.. . +..-.+..|.+.|+|++
T Consensus 98 s~l~ri------rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~--h~~Lp~d~d~dln~sas~~~fdr~g~yIi 169 (405)
T KOG1273|consen 98 SPLKRI------RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK--HSVLPKDDDGDLNSSASHGVFDRRGKYII 169 (405)
T ss_pred CceeEE------EccCccceeeeccccCCeEEEEEecCCcEEEEecCCc--eeeccCCCccccccccccccccCCCCEEE
Confidence 766554 2356789999999888877776666555555554321 111110 0 01122346889999999
Q ss_pred EeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCc----eE-EEec-cccc-
Q 016974 267 TGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA----KV-VLNL-GSLQ- 339 (379)
Q Consensus 267 s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~----~~-~~~~-~~~~- 339 (379)
+|...|.+-++|..+.+.+..+... ....|.++.|+-.|++|+.-+.|+.|+.|+...- +- ..+. ..++
T Consensus 170 tGtsKGkllv~~a~t~e~vas~rit----s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qD 245 (405)
T KOG1273|consen 170 TGTSKGKLLVYDAETLECVASFRIT----SVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQD 245 (405)
T ss_pred EecCcceEEEEecchheeeeeeeec----hheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHH
Confidence 9999999999999988776655331 2345889999999999999999999999986411 00 0000 0000
Q ss_pred CCccCceeEEEECCCCCeEEEeeCC-CcEEEEecCc
Q 016974 340 NSHEGRITCLGLSADGSALCTGSWD-TNLKIWAFGG 374 (379)
Q Consensus 340 ~~h~~~v~~~~~s~d~~~l~s~s~D-~~i~vw~~~~ 374 (379)
..-.-.=.+++||.||.+++.|+.- ..++||.-+.
T Consensus 246 vVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~ 281 (405)
T KOG1273|consen 246 VVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSI 281 (405)
T ss_pred HHhhhhhhheeecCCccEEEeccccceeEEEEecCC
Confidence 0011123678899999999987754 4599997544
No 169
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=3.3e-20 Score=161.33 Aligned_cols=248 Identities=18% Similarity=0.270 Sum_probs=186.1
Q ss_pred CcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeec
Q 016974 109 CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI 188 (379)
Q Consensus 109 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~ 188 (379)
.+.|.++.|+|....++++|.|++++||.++....+ ....+.--..+|.++.|.|++...+++++.......||+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~-----~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDl 287 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP-----KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDL 287 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccCh-----hheeeeeccCccceeeecCCCceEEEecccceEEEEeec
Confidence 367999999999999999999999999999864422 233333345689999999988768999999999999999
Q ss_pred CCCeeEEEecCccccCCc-cCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEE
Q 016974 189 TTGLRTSVFGGEFQSGHT-ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGT 267 (379)
Q Consensus 189 ~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s 267 (379)
.+......-.. .++. ..+....+++ ++++++..+..|.|.+-...+. +.+..+. -++.|..+.|+.+|+.|++
T Consensus 288 e~ak~~k~~~~---~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~-eli~s~K-ieG~v~~~~fsSdsk~l~~ 361 (514)
T KOG2055|consen 288 ETAKVTKLKPP---YGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTK-ELITSFK-IEGVVSDFTFSSDSKELLA 361 (514)
T ss_pred cccccccccCC---CCcccchhheeEecC-CCCeEEEcccCceEEeehhhhh-hhhheee-eccEEeeEEEecCCcEEEE
Confidence 87643322111 2222 3445556665 6679999999999999877644 4555554 4678999999999999999
Q ss_pred eeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCce---EEEecccccCCccC
Q 016974 268 GSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK---VVLNLGSLQNSHEG 344 (379)
Q Consensus 268 ~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~---~~~~~~~~~~~h~~ 344 (379)
++.+|.|.+||+++...+..+....+- .-++++.|++|.|||+|+..|-|.|||..+.. ...++.++ ..-..
T Consensus 362 ~~~~GeV~v~nl~~~~~~~rf~D~G~v----~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~-dNLtt 436 (514)
T KOG2055|consen 362 SGGTGEVYVWNLRQNSCLHRFVDDGSV----HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTV-DNLTT 436 (514)
T ss_pred EcCCceEEEEecCCcceEEEEeecCcc----ceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhh-hhhhe
Confidence 999999999999998887777654322 24688999999999999999999999954322 11122222 23455
Q ss_pred ceeEEEECCCCCeEEEeeC--CCcEEEEec
Q 016974 345 RITCLGLSADGSALCTGSW--DTNLKIWAF 372 (379)
Q Consensus 345 ~v~~~~~s~d~~~l~s~s~--D~~i~vw~~ 372 (379)
.|+++.|+||++.||.+|. +..+|+-.+
T Consensus 437 ~Itsl~Fn~d~qiLAiaS~~~knalrLVHv 466 (514)
T KOG2055|consen 437 AITSLQFNHDAQILAIASRVKKNALRLVHV 466 (514)
T ss_pred eeeeeeeCcchhhhhhhhhccccceEEEec
Confidence 7999999999999998776 456666443
No 170
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.87 E-value=3.2e-20 Score=168.13 Aligned_cols=271 Identities=14% Similarity=0.247 Sum_probs=201.6
Q ss_pred cEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCc
Q 016974 69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNL 148 (379)
Q Consensus 69 ~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~ 148 (379)
.|+.++|.|||..|+.+. +..+.++|...|....++++|..-|.+++|+.+|+.+|+|+.|+.+.+|+-.-
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-------- 84 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-------- 84 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc--------
Confidence 699999999999887655 44699999999999999999999999999999999999999999999997431
Q ss_pred ceeeee-cccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecC
Q 016974 149 PVSRML-SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC 227 (379)
Q Consensus 149 ~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~ 227 (379)
..++ ..|.+.|.|+.|+|-. ..|++++. .-.-+|......... ......+.+++|.. ++.+|+.|..
T Consensus 85 --EG~LkYSH~D~IQCMsFNP~~-h~LasCsL-sdFglWS~~qK~V~K-------~kss~R~~~CsWtn-DGqylalG~~ 152 (1081)
T KOG1538|consen 85 --EGILKYSHNDAIQCMSFNPIT-HQLASCSL-SDFGLWSPEQKSVSK-------HKSSSRIICCSWTN-DGQYLALGMF 152 (1081)
T ss_pred --cceeeeccCCeeeEeecCchH-HHhhhcch-hhccccChhhhhHHh-------hhhheeEEEeeecC-CCcEEEEecc
Confidence 1112 3699999999999964 45777654 446778765432111 12235678888885 8899999999
Q ss_pred CCcEEEEEccCCccceEE--EecccCCeeEEEEccCC-----CEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCe
Q 016974 228 DSTARLWDTRVASRAVRT--FHGHEGDVNTVKFFPDG-----NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV 300 (379)
Q Consensus 228 d~~i~vwd~~~~~~~~~~--~~~h~~~v~~v~~sp~g-----~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v 300 (379)
||+|.+-+-. ..+.... .-|.+.+|++++|+|.. ..++......++.++.+. |+.+..- .+-....
T Consensus 153 nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~-----r~L~FdP 225 (1081)
T KOG1538|consen 153 NGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKD-----RALNFDP 225 (1081)
T ss_pred CceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeeccc-----ccCCCCc
Confidence 9999887543 2222222 22467899999999963 356666666677776654 3332211 1111234
Q ss_pred EEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEec
Q 016974 301 TSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 372 (379)
Q Consensus 301 ~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~ 372 (379)
.|+.+-++|.|+..|++|+.+++|.- .+-..-+++. ....|+.++..|+++.++.|.-||||-.|.+
T Consensus 226 ~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~----~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 226 CCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGE----QDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred hhheeccCCcEEEEccCCCceEEEee-cCeEEeeccc----cceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 68999999999999999999999963 3333444432 3458999999999999999999999998875
No 171
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.87 E-value=2.8e-19 Score=166.33 Aligned_cols=279 Identities=19% Similarity=0.223 Sum_probs=192.6
Q ss_pred CCcEEEEECCCCceeeEeecCCcceEEEEECCC-CCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEE
Q 016974 88 DGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT-GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY 166 (379)
Q Consensus 88 D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 166 (379)
++.+.+|++.........-.....|.+++|+|. ..+++.|..+|+|.+||+....... ..+.......|..+|..+.|
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~-~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP-PSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred CceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC-CcccccccccCCcCeEEEEE
Confidence 457999998776333333333456999999995 4678888899999999998654311 11223334578999999999
Q ss_pred ecCCC-ceEEEeeCCCeEEEeecCCCee---EEEecCc----cccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEE---
Q 016974 167 VPDED-THLITSSGDQTCVLWDITTGLR---TSVFGGE----FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWD--- 235 (379)
Q Consensus 167 ~~~~~-~~l~s~~~d~~i~~wd~~~~~~---~~~~~~~----~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd--- 235 (379)
..+.. .-+++++.||.|..|+++.-.. ....... .+..-...++++.|.+.+...|+.|+.+|.|..-.
T Consensus 300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g 379 (555)
T KOG1587|consen 300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG 379 (555)
T ss_pred eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence 76432 2388999999999998753211 0000000 01122356788999999999999999999987632
Q ss_pred ccCCc----cceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECC-CCceeEEEeeccCCCCCCCeEEEEEccCCC
Q 016974 236 TRVAS----RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR-TGHQLQVYYQQHGENEIPHVTSIAFSISGR 310 (379)
Q Consensus 236 ~~~~~----~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~ 310 (379)
.+... +....+..|.++|+++.++|-+..++..+.|.+++||... ...++..+.. ....|++++|||...
T Consensus 380 ~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~-----~~~~v~~vaWSptrp 454 (555)
T KOG1587|consen 380 YTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDS-----SPDYVTDVAWSPTRP 454 (555)
T ss_pred CcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhh-----ccceeeeeEEcCcCc
Confidence 22222 2234566788999999999987766555559999999876 3333322211 233599999999876
Q ss_pred -EEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 311 -LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 311 -~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
.++++..||.|.+||+.......... +..+....+.+.|++.|++|+.|+..|+|.+|++..
T Consensus 455 avF~~~d~~G~l~iWDLl~~~~~Pv~s--~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 455 AVFATVDGDGNLDIWDLLQDDEEPVLS--QKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred eEEEEEcCCCceehhhhhccccCCccc--ccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 56677889999999976543221111 133456678888899999999999999999999864
No 172
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.86 E-value=1.6e-20 Score=156.85 Aligned_cols=252 Identities=17% Similarity=0.282 Sum_probs=187.1
Q ss_pred ccccEEEEEeeCCC----CeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCC-CEEEEeeCCCcEEEEEcCC
Q 016974 66 HAGKVYSLDWTSER----NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG-QSVACGGLDSVCSIFNLNS 140 (379)
Q Consensus 66 H~~~v~~~~~~~~~----~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~d~~i~iw~~~~ 140 (379)
|...-+.++|+-+- .+||.|+.-|.|||-|+.+++....+.+|...|..+.|.|+. ++++++|.|..+++|++++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT 167 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence 67778889998653 468899999999999999999999999999999999999976 7999999999999999985
Q ss_pred CCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecC---------------------
Q 016974 141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG--------------------- 199 (379)
Q Consensus 141 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--------------------- 199 (379)
.. -..+..-+.||.+.|.++.|+++++ .++|++.|.++++|++........++.
T Consensus 168 ~~----Cv~VfGG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp 242 (385)
T KOG1034|consen 168 DV----CVAVFGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFP 242 (385)
T ss_pred Ce----EEEEecccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccc
Confidence 32 1112223468999999999999875 899999999999999874311100000
Q ss_pred --ccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCcc-------------ceEEEecccCCeeEEEE--ccCC
Q 016974 200 --EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR-------------AVRTFHGHEGDVNTVKF--FPDG 262 (379)
Q Consensus 200 --~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~-------------~~~~~~~h~~~v~~v~~--sp~g 262 (379)
....-|...|-++.|.. +++++=+.++.|..|......+ .+..+.-....|+-+.| .|-+
T Consensus 243 ~fst~diHrnyVDCvrw~g---d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~ 319 (385)
T KOG1034|consen 243 DFSTTDIHRNYVDCVRWFG---DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ 319 (385)
T ss_pred cccccccccchHHHHHHHh---hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHH
Confidence 01134556666666653 5889999999999998621111 11223323345666655 5668
Q ss_pred CEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeC
Q 016974 263 NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326 (379)
Q Consensus 263 ~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~ 326 (379)
+.||.|.+.|.+.+||++..++.... ..........|.+.+||.||.+|+...+|++|--||.
T Consensus 320 ~~la~gnq~g~v~vwdL~~~ep~~~t-tl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 320 KMLALGNQSGKVYVWDLDNNEPPKCT-TLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred HHHhhccCCCcEEEEECCCCCCccCc-eEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 89999999999999999876653111 1111223456999999999999999999999999984
No 173
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.85 E-value=1.1e-19 Score=151.61 Aligned_cols=239 Identities=21% Similarity=0.374 Sum_probs=179.1
Q ss_pred ccEEEEEee-------CCCCeEEEEcCCCcEEEEECCCCceeeEeecC--C---cceEEEEECCCCCEEEEeeCCCcEEE
Q 016974 68 GKVYSLDWT-------SERNRIVSASQDGRLIVWNALTSQKTHAIKLP--C---AWVMTCAFSPTGQSVACGGLDSVCSI 135 (379)
Q Consensus 68 ~~v~~~~~~-------~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~--~---~~v~~~~~s~~g~~l~~~~~d~~i~i 135 (379)
..|+..+|- |+..++|+.+.|.-|.+||..+|+....++.- . ....+++|+|||.+|.+ |....|++
T Consensus 105 ~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa-Gykrcirv 183 (406)
T KOG2919|consen 105 ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA-GYKRCIRV 183 (406)
T ss_pred CEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEee-cccceEEE
Confidence 347788886 66789999999999999999999988776542 2 23568999999999986 56778999
Q ss_pred EEcCCCCCCCCCcce-eeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEE
Q 016974 136 FNLNSPTDKDGNLPV-SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSI 214 (379)
Q Consensus 136 w~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~ 214 (379)
+|+.-+.......+. .+...+..+.+.+.+|+|.+...++.|+.-.++-||.-..+..+..+ .+|.+.|+.+.|
T Consensus 184 Fdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~ll-----ggh~gGvThL~~ 258 (406)
T KOG2919|consen 184 FDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLL-----GGHGGGVTHLQW 258 (406)
T ss_pred eeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeee-----cccCCCeeeEEe
Confidence 999543322111111 11133557889999999998888999999999988876665555555 489999999999
Q ss_pred eCCCCcEEEEec-CCCcEEEEEccCCccceEEEecccC-CeeEEEE--ccCCCEEEEeeCCCeEEEEECCC-CceeEEEe
Q 016974 215 SGSNSRMFVSGS-CDSTARLWDTRVASRAVRTFHGHEG-DVNTVKF--FPDGNRFGTGSDDGTCRLFDIRT-GHQLQVYY 289 (379)
Q Consensus 215 ~~~~~~~l~sg~-~d~~i~vwd~~~~~~~~~~~~~h~~-~v~~v~~--sp~g~~l~s~s~D~~i~iwd~~~-~~~~~~~~ 289 (379)
.+.. +.|++|+ .|-.|..||+|....++..+..|.+ .--.|-| .|+++.|++|+.||.|++||+++ +..+..+.
T Consensus 259 ~edG-n~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~ 337 (406)
T KOG2919|consen 259 CEDG-NKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTG 337 (406)
T ss_pred ccCc-CeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccc
Confidence 9854 4555665 5788999999988888878888876 3345555 58899999999999999999987 44333331
Q ss_pred eccCCCCCCCeEEEEEccCCCEEEEEEec
Q 016974 290 QQHGENEIPHVTSIAFSISGRLLFAGYSN 318 (379)
Q Consensus 290 ~~~~~~~~~~v~~~~fs~~g~~l~sg~~d 318 (379)
+....++.++++|-=.++|+++..
T Consensus 338 -----~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 338 -----NYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred -----cccccccceecCcccceeeeccCc
Confidence 223358889999987777776543
No 174
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.85 E-value=9.7e-20 Score=155.58 Aligned_cols=216 Identities=21% Similarity=0.332 Sum_probs=163.3
Q ss_pred ccccccccEEEEEeeC-CCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCC
Q 016974 62 TLQGHAGKVYSLDWTS-ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS 140 (379)
Q Consensus 62 ~l~gH~~~v~~~~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~ 140 (379)
.+.||+++|..++|+| +.+.|||||.|.+|.||++-.+.....+.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt---------------------------------- 121 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT---------------------------------- 121 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc----------------------------------
Confidence 6789999999999999 45679999999999999976543221111
Q ss_pred CCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCc
Q 016974 141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR 220 (379)
Q Consensus 141 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 220 (379)
.....+.||...|-.++|+|...+.|++++.|++|.+|++.++.....+ .|.+-|.++.|+. ++.
T Consensus 122 --------epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l------~hpd~i~S~sfn~-dGs 186 (472)
T KOG0303|consen 122 --------EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITL------DHPDMVYSMSFNR-DGS 186 (472)
T ss_pred --------cceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeec------CCCCeEEEEEecc-CCc
Confidence 1234578999999999999998899999999999999999999776554 4999999999996 788
Q ss_pred EEEEecCCCcEEEEEccCCccceEEEecccCC-eeEEEEccCCCEEEEee---CCCeEEEEECCCCceeEEEeeccCCCC
Q 016974 221 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGD-VNTVKFFPDGNRFGTGS---DDGTCRLFDIRTGHQLQVYYQQHGENE 296 (379)
Q Consensus 221 ~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~-v~~v~~sp~g~~l~s~s---~D~~i~iwd~~~~~~~~~~~~~~~~~~ 296 (379)
+|+|.+.|+.|||||.+.. ..+..-.+|++. -..+-|-.+|..+.+|- .++.+-+||......-..+..-..
T Consensus 187 ~l~TtckDKkvRv~dpr~~-~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt--- 262 (472)
T KOG0303|consen 187 LLCTTCKDKKVRVIDPRRG-TVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT--- 262 (472)
T ss_pred eeeeecccceeEEEcCCCC-cEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEecc---
Confidence 9999999999999999876 556666778763 45677888998666663 578899999765432211111111
Q ss_pred CCCeEEEEEccCCCEEEE-EEecCcEEEEeCCCce
Q 016974 297 IPHVTSIAFSISGRLLFA-GYSNGDCYVWDTLLAK 330 (379)
Q Consensus 297 ~~~v~~~~fs~~g~~l~s-g~~dg~i~iwd~~~~~ 330 (379)
...|.--=|++|..+|+. |-.|+.|+.|.+....
T Consensus 263 SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 263 SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred CCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 122444456888887754 5689999999976544
No 175
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.84 E-value=1.9e-17 Score=140.64 Aligned_cols=237 Identities=17% Similarity=0.274 Sum_probs=166.2
Q ss_pred ccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCC--CcEEEEEcCCCCCCC
Q 016974 68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD--SVCSIFNLNSPTDKD 145 (379)
Q Consensus 68 ~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d--~~i~iw~~~~~~~~~ 145 (379)
..+..+.|+.+...|..|+.|| -+++.................|.-+-|+.. ++|..+.+ +..++.++....
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~--- 79 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKT--- 79 (391)
T ss_pred cceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCc---
Confidence 3466777999998999999998 677876654432222223333444445543 34444433 347777765321
Q ss_pred CCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEE-
Q 016974 146 GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS- 224 (379)
Q Consensus 146 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s- 224 (379)
.+.... ....|.++.+.. +.|+..-.+. |.|||+++...+..+... ..+...+.+++++..+ .+++-
T Consensus 80 ---~ICe~~--fpt~IL~VrmNr---~RLvV~Lee~-IyIydI~~MklLhTI~t~--~~n~~gl~AlS~n~~n-~ylAyp 147 (391)
T KOG2110|consen 80 ---TICEIF--FPTSILAVRMNR---KRLVVCLEES-IYIYDIKDMKLLHTIETT--PPNPKGLCALSPNNAN-CYLAYP 147 (391)
T ss_pred ---eEEEEe--cCCceEEEEEcc---ceEEEEEccc-EEEEecccceeehhhhcc--CCCccceEeeccCCCC-ceEEec
Confidence 111111 234577788754 3455554444 999999998777666422 3466667777777533 45543
Q ss_pred ec-CCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCe-EEEEECCCCceeEEEeeccCCCCCCCeEE
Q 016974 225 GS-CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT-CRLFDIRTGHQLQVYYQQHGENEIPHVTS 302 (379)
Q Consensus 225 g~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~-i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 302 (379)
++ .-|.|.+||..+. +++..+.+|.+++-+++|+|+|.+||++|+.|+ ||||.+.+|+.+..|..... ...|.+
T Consensus 148 ~s~t~GdV~l~d~~nl-~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~---~~~IyS 223 (391)
T KOG2110|consen 148 GSTTSGDVVLFDTINL-QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY---PVSIYS 223 (391)
T ss_pred CCCCCceEEEEEcccc-eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce---eeEEEE
Confidence 33 3588999999865 567788999999999999999999999999998 89999999998887755332 346899
Q ss_pred EEEccCCCEEEEEEecCcEEEEeC
Q 016974 303 IAFSISGRLLFAGYSNGDCYVWDT 326 (379)
Q Consensus 303 ~~fs~~g~~l~sg~~dg~i~iwd~ 326 (379)
++|+|++++|++.+..++|++|.+
T Consensus 224 L~Fs~ds~~L~~sS~TeTVHiFKL 247 (391)
T KOG2110|consen 224 LSFSPDSQFLAASSNTETVHIFKL 247 (391)
T ss_pred EEECCCCCeEEEecCCCeEEEEEe
Confidence 999999999999999999999975
No 176
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=3.3e-20 Score=165.16 Aligned_cols=260 Identities=20% Similarity=0.339 Sum_probs=181.9
Q ss_pred EeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCC-CCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCe
Q 016974 104 AIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPT-DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT 182 (379)
Q Consensus 104 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~-~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~ 182 (379)
++..|...+..++|.|....|++++.|+++++|++.... ..........++.+|.++|.|+.+.+. ...+++|+.||+
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n-~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSN-GEHCYSGGIDGT 367 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCC-ceEEEeeccCce
Confidence 445566778888999999999999999999999994311 122334456788999999999999876 468999999999
Q ss_pred EEEeecCCC------eeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEec--ccCCee
Q 016974 183 CVLWDITTG------LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--HEGDVN 254 (379)
Q Consensus 183 i~~wd~~~~------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~--h~~~v~ 254 (379)
|+.|++... .....+.. ...||.+.+..++++... ..|++++.||++|.|+...... .++.. ..+.-.
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~-~l~Ghtdavw~l~~s~~~-~~Llscs~DgTvr~w~~~~~~~--~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSG-TLLGHTDAVWLLALSSTK-DRLLSCSSDGTVRLWEPTEESP--CTFGEPKEHGYPL 443 (577)
T ss_pred eeeeccCCCCCcccccCcchhcc-ceeccccceeeeeecccc-cceeeecCCceEEeeccCCcCc--cccCCccccCCcc
Confidence 999966421 11112222 236899999999999754 4588999999999999764432 22221 112234
Q ss_pred EEEEccCCCEEEEeeCCCeEE---EEECCCCceeEEEeecc--CCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCc
Q 016974 255 TVKFFPDGNRFGTGSDDGTCR---LFDIRTGHQLQVYYQQH--GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA 329 (379)
Q Consensus 255 ~v~~sp~g~~l~s~s~D~~i~---iwd~~~~~~~~~~~~~~--~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~ 329 (379)
++.|-- ..++-...+...+ +.++.....+..+.... +......+..+...|.+.+.+++..|+.|+++|..++
T Consensus 444 svd~~s--s~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~ 521 (577)
T KOG0642|consen 444 SVDRTS--SRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG 521 (577)
T ss_pred eEeecc--chhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc
Confidence 444422 1111112222333 33333333333332111 1112234677888999999999999999999999888
Q ss_pred eEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 330 KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 330 ~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
+++..+ ..|...|+++++.|+|-+|++++.|+.|++|.+..
T Consensus 522 ~~l~s~----~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 522 KILHSM----VAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred ccchhe----eeccceecceeecCCCceEEeecCCceeehhhccc
Confidence 877655 57889999999999999999999999999999855
No 177
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.84 E-value=3.4e-18 Score=164.61 Aligned_cols=311 Identities=19% Similarity=0.232 Sum_probs=206.3
Q ss_pred ceeEeeccccccccEEEEEeeCCC-CeEEEEcCCCcEEEEECCCC-------ceeeEeecCCcceEEEEECCCCCEEEEe
Q 016974 56 DLVCCRTLQGHAGKVYSLDWTSER-NRIVSASQDGRLIVWNALTS-------QKTHAIKLPCAWVMTCAFSPTGQSVACG 127 (379)
Q Consensus 56 ~~~~~~~l~gH~~~v~~~~~~~~~-~~l~s~s~D~~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 127 (379)
....+.+|..|...|..++.+++. .+++|||.||+||+||...- +...++......+..+.+-+.|+.+|++
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence 345677899999999999888765 89999999999999997532 2223344455678888899999999999
Q ss_pred eCCCcEEEEEcCCCCCCCCCcceeeeecccc-cc-eEEEEEecCCCc-eEEEeeCCCeEEEeecCCCeeEEEecCccccC
Q 016974 128 GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK-GY-VSCCQYVPDEDT-HLITSSGDQTCVLWDITTGLRTSVFGGEFQSG 204 (379)
Q Consensus 128 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~-~~-v~~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 204 (379)
+.||.|.+.+++......-.....+....+. +. |.+-+|...... .++.+..-+.|..||++.......... ..
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~---~~ 1193 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN---QL 1193 (1431)
T ss_pred cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc---Cc
Confidence 9999999999985321111111222222222 22 333344333333 577788889999999876533222211 23
Q ss_pred CccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEE-ecccCCeeEEEEccCC---CEEEEee--CCCeEEEEE
Q 016974 205 HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF-HGHEGDVNTVKFFPDG---NRFGTGS--DDGTCRLFD 278 (379)
Q Consensus 205 h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~-~~h~~~v~~v~~sp~g---~~l~s~s--~D~~i~iwd 278 (379)
..+.|++++.+| .++.+++|+..|.+-+||+|.. .++..+ .++..+|..|..+|-. ...++++ ..+.|.+|+
T Consensus 1194 ~hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF~-~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn 1271 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFR-VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWN 1271 (1431)
T ss_pred cccceeEEEecC-CceEEEEecCCceEEEEEeecC-ceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeee
Confidence 457799999997 6679999999999999999965 444443 2445678888887742 4555554 467899999
Q ss_pred CCCCceeEEEeeccCC--------------CCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEE------------
Q 016974 279 IRTGHQLQVYYQQHGE--------------NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV------------ 332 (379)
Q Consensus 279 ~~~~~~~~~~~~~~~~--------------~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~------------ 332 (379)
+.+|..-..+....+. ..........+..-+.++.+|+.|..|+.||.......
T Consensus 1272 ~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~ 1351 (1431)
T KOG1240|consen 1272 METGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYS 1351 (1431)
T ss_pred cccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCcccccc
Confidence 9998655554432110 01111233445555668999999999999995322111
Q ss_pred -----------------E----------------eccc-------ccCCccCceeEEEECC-CCCeEEEeeCCCcEEEEe
Q 016974 333 -----------------L----------------NLGS-------LQNSHEGRITCLGLSA-DGSALCTGSWDTNLKIWA 371 (379)
Q Consensus 333 -----------------~----------------~~~~-------~~~~h~~~v~~~~~s~-d~~~l~s~s~D~~i~vw~ 371 (379)
. +... ....|..+|+++++-. +..+|+++|.||.|+||.
T Consensus 1352 ~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1352 TNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred ccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 0 0000 0013777888888743 356899999999999995
No 178
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.84 E-value=1.3e-17 Score=150.76 Aligned_cols=280 Identities=12% Similarity=0.144 Sum_probs=172.2
Q ss_pred EEEEcCCCcEEEEECCC-Cc--eeeEeecCCcceEEEEECCCCCEEEEee-CCCcEEEEEcCCCCCCCCCcceeeeeccc
Q 016974 82 IVSASQDGRLIVWNALT-SQ--KTHAIKLPCAWVMTCAFSPTGQSVACGG-LDSVCSIFNLNSPTDKDGNLPVSRMLSGH 157 (379)
Q Consensus 82 l~s~s~D~~v~iwd~~~-~~--~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~h 157 (379)
+++...|+.|++||+.+ ++ .+..+.. ......++++|++++|++++ .++.+.+|+++.. +.+....... .
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~-~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~----g~l~~~~~~~-~ 78 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDV-PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADD----GALTFAAESP-L 78 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEec-CCCCccEEECCCCCEEEEEECCCCcEEEEEECCC----CceEEeeeec-C
Confidence 34447799999999964 33 3344433 34567789999999887764 4788999998631 2221111111 1
Q ss_pred ccceEEEEEecCCCceEEEeeCCCeEEEeecCC-CeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEc
Q 016974 158 KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT-GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT 236 (379)
Q Consensus 158 ~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~ 236 (379)
.+....+.++|++..++++...++.|.+|++.+ +....... . ..+......+.++|....++++...++.|.+||+
T Consensus 79 ~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~-~--~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~ 155 (330)
T PRK11028 79 PGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQ-I--IEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTL 155 (330)
T ss_pred CCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCcee-e--ccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEE
Confidence 223567889998754444555689999999863 21111110 0 1122234566778754445566667899999999
Q ss_pred cCCccce------EEEecccCCeeEEEEccCCCEEEEeeC-CCeEEEEECCC--Cce--eEEEeec-cCCCCCCCeEEEE
Q 016974 237 RVASRAV------RTFHGHEGDVNTVKFFPDGNRFGTGSD-DGTCRLFDIRT--GHQ--LQVYYQQ-HGENEIPHVTSIA 304 (379)
Q Consensus 237 ~~~~~~~------~~~~~h~~~v~~v~~sp~g~~l~s~s~-D~~i~iwd~~~--~~~--~~~~~~~-~~~~~~~~v~~~~ 304 (379)
....... .... .......++|+|+|++++++.. +++|.+|++.. +.. +..+... ...........+.
T Consensus 156 ~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~ 234 (330)
T PRK11028 156 SDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIH 234 (330)
T ss_pred CCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEE
Confidence 7532211 0111 1234578999999999988775 89999999973 221 2222110 0001112334689
Q ss_pred EccCCCEEEEEE-ecCcEEEEeCCCce-EEEecccccCCccCceeEEEECCCCCeEEEeeC-CCcEEEEecC
Q 016974 305 FSISGRLLFAGY-SNGDCYVWDTLLAK-VVLNLGSLQNSHEGRITCLGLSADGSALCTGSW-DTNLKIWAFG 373 (379)
Q Consensus 305 fs~~g~~l~sg~-~dg~i~iwd~~~~~-~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~-D~~i~vw~~~ 373 (379)
|+|+|++++++. .++.|.+|++.... ..........+ .....+.|+|||++|+++.. +++|.+|+++
T Consensus 235 ~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~--~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 235 ITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE--TQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred ECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc--ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 999999999985 46789999974332 11111111111 13356899999999998775 8999999875
No 179
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.84 E-value=5.8e-19 Score=145.28 Aligned_cols=240 Identities=16% Similarity=0.286 Sum_probs=178.8
Q ss_pred cccccEEEEEeeCCCC-----eEEEEcCCCcEEEEECCCCcee---------eEeecCCcceEEEEECC-CCCEEEEeeC
Q 016974 65 GHAGKVYSLDWTSERN-----RIVSASQDGRLIVWNALTSQKT---------HAIKLPCAWVMTCAFSP-TGQSVACGGL 129 (379)
Q Consensus 65 gH~~~v~~~~~~~~~~-----~l~s~s~D~~v~iwd~~~~~~~---------~~~~~~~~~v~~~~~s~-~g~~l~~~~~ 129 (379)
.|.-+++.+.|.|+.. +|||++ ..+|+|.+...... ..-..+++++++..|+. +.+++.+.|-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 5888999999999863 455533 46999988632211 11123456778878875 5689999999
Q ss_pred CCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCe
Q 016974 130 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADV 209 (379)
Q Consensus 130 d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v 209 (379)
|.++.|||+..... ..+...+-.|...|+.++|...+...+++.+.||.+|++|++.......+-.. .....+.
T Consensus 172 DTTCTiWdie~~~~----~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~--p~~~~pL 245 (364)
T KOG0290|consen 172 DTTCTIWDIETGVS----GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYED--PSPSTPL 245 (364)
T ss_pred cCeEEEEEEeeccc----cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecC--CCCCCcc
Confidence 99999999986411 11233466899999999999877778999999999999999876544443221 1225678
Q ss_pred EEEEEeCCCCcEEEEecCCC-cEEEEEccCCccceEEEecccCCeeEEEEcc-CCCEEEEeeCCCeEEEEECCCCce---
Q 016974 210 LSVSISGSNSRMFVSGSCDS-TARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQ--- 284 (379)
Q Consensus 210 ~~~~~~~~~~~~l~sg~~d~-~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp-~g~~l~s~s~D~~i~iwd~~~~~~--- 284 (379)
..++++..+.+++|+-..|. .|.|-|+|.+..++..+++|.+.|+.++|.| ....|.++++|..+-+||+.+.-.
T Consensus 246 lRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~ 325 (364)
T KOG0290|consen 246 LRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENG 325 (364)
T ss_pred eeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCC
Confidence 89999999999999877664 6999999998888999999999999999999 567899999999999999975321
Q ss_pred ---eEEEeeccCCCCCCCeEEEEEcc-CCCEEEEEEec
Q 016974 285 ---LQVYYQQHGENEIPHVTSIAFSI-SGRLLFAGYSN 318 (379)
Q Consensus 285 ---~~~~~~~~~~~~~~~v~~~~fs~-~g~~l~sg~~d 318 (379)
+..+. ....|+.+.|++ .+.+|+.+...
T Consensus 326 ~dPilay~------a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 326 EDPILAYT------AGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred CCchhhhh------ccceeeeeeecccCCCEEEEEecC
Confidence 11111 123589999986 45577766543
No 180
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.5e-19 Score=160.43 Aligned_cols=250 Identities=24% Similarity=0.356 Sum_probs=175.2
Q ss_pred eeccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEee-cCCcceEEEEECCC--CCEEEEeeCCCcEEEE
Q 016974 60 CRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK-LPCAWVMTCAFSPT--GQSVACGGLDSVCSIF 136 (379)
Q Consensus 60 ~~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~--g~~l~~~~~d~~i~iw 136 (379)
...|.||++-|+|++|+.+|.+|+|||.|-.+.|||....+.++.+. +|.+.|.++.|-|. .+.+++|..|..|+++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 35799999999999999999999999999999999999888888875 68889999999884 5789999999999999
Q ss_pred EcCCCCCC---CCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEec---Cccc--cCCccC
Q 016974 137 NLNSPTDK---DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG---GEFQ--SGHTAD 208 (379)
Q Consensus 137 ~~~~~~~~---~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~---~~~~--~~h~~~ 208 (379)
|++..... .+.....+...-|...|..++..|.++..+.+++.||+++-+|++.......-+ .... ...--.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 99863321 122233445567888898899999888899999999999999998642111000 0000 011234
Q ss_pred eEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEeccc----CCeeEEE-EccCCCEEEEeeCCCeEEEEECCCCc
Q 016974 209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE----GDVNTVK-FFPDGNRFGTGSDDGTCRLFDIRTGH 283 (379)
Q Consensus 209 v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~----~~v~~v~-~sp~g~~l~s~s~D~~i~iwd~~~~~ 283 (379)
..+++++|.+..+|+.|+.|-..++||.+...+....-..|. ....||. |+|.+- ...+|.+.
T Consensus 203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl----kn~~gn~~-------- 270 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL----KNSQGNLD-------- 270 (758)
T ss_pred eeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc----cCcccccc--------
Confidence 678999999999999999999999999763322211100011 1111222 223221 11111100
Q ss_pred eeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEE
Q 016974 284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV 332 (379)
Q Consensus 284 ~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~ 332 (379)
.....++-+.|+|+|.-|+.......|+++|+...+..
T Consensus 271 -----------~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 271 -----------RYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred -----------cceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 00112577899999998887777778999998766543
No 181
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=7.1e-18 Score=135.63 Aligned_cols=248 Identities=17% Similarity=0.253 Sum_probs=174.0
Q ss_pred eEEEEECCCCCEEEEeeCCCcEEEEEcCCCC----CCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEee
Q 016974 112 VMTCAFSPTGQSVACGGLDSVCSIFNLNSPT----DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD 187 (379)
Q Consensus 112 v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~----~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd 187 (379)
|.+-+++|.+++++.|+.+|+|.+..+++-. .+.++.++ -..++|.++++.++|.. .+|++|+ ||.|+=|.
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~i-v~eqahdgpiy~~~f~d---~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKI-VPEQAHDGPIYYLAFHD---DFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcce-eeccccCCCeeeeeeeh---hheeecc-CceEEEee
Confidence 4455789999999999999999999987532 22333332 34579999999999973 4677765 59999886
Q ss_pred cCCCeeEE--------EecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEc
Q 016974 188 ITTGLRTS--------VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFF 259 (379)
Q Consensus 188 ~~~~~~~~--------~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~s 259 (379)
-+...... ..+.......-..|+++...|..+.+|..| -|+.+.-||+... +..++++||++.|+++.--
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G-~i~r~~rGHtDYvH~vv~R 165 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDG-RIQREYRGHTDYVHSVVGR 165 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCC-EEEEEEcCCcceeeeeeec
Confidence 54321100 000000012235678888888777666544 7999999999866 6788999999999999984
Q ss_pred cCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCC-----CCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEe
Q 016974 260 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN-----EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLN 334 (379)
Q Consensus 260 p~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~-----~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~ 334 (379)
.....+.+|++||++|+||+++++.++++.....++ ...+|.+++. +..++++|+.- .+.+|.+...+....
T Consensus 166 ~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp-~lslwhLrsse~t~v 242 (325)
T KOG0649|consen 166 NANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGP-KLSLWHLRSSESTCV 242 (325)
T ss_pred ccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCC-ceeEEeccCCCceEE
Confidence 444568899999999999999999887764322211 1234556654 45688877543 699999887766554
Q ss_pred cccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecCcee
Q 016974 335 LGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYR 376 (379)
Q Consensus 335 ~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~~~ 376 (379)
+ .-..+|-.+.|.. ..+++++..+.|.-|.+++..
T Consensus 243 f-----pipa~v~~v~F~~--d~vl~~G~g~~v~~~~l~Gvl 277 (325)
T KOG0649|consen 243 F-----PIPARVHLVDFVD--DCVLIGGEGNHVQSYTLNGVL 277 (325)
T ss_pred E-----ecccceeEeeeec--ceEEEeccccceeeeeeccEE
Confidence 4 2234566677754 466778888899999998843
No 182
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.83 E-value=1.5e-18 Score=161.47 Aligned_cols=256 Identities=17% Similarity=0.239 Sum_probs=183.4
Q ss_pred cccEEEEEeeC-CCCeEEEEcCCCcEEEEECCCCce--eeE----eecCCcceEEEEECCCC--CEEEEeeCCCcEEEEE
Q 016974 67 AGKVYSLDWTS-ERNRIVSASQDGRLIVWNALTSQK--THA----IKLPCAWVMTCAFSPTG--QSVACGGLDSVCSIFN 137 (379)
Q Consensus 67 ~~~v~~~~~~~-~~~~l~s~s~D~~v~iwd~~~~~~--~~~----~~~~~~~v~~~~~s~~g--~~l~~~~~d~~i~iw~ 137 (379)
...|.|+.|+| +..+++.|..+|.|-+||+..+.. ... ...|...+..+.|..+- .-+++++.||.|..|+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence 35699999999 456788999999999999987665 222 23466778888886654 4599999999999999
Q ss_pred cCCCCCCCCCcceeeee-----cccccceEEEEEecCCCceEEEeeCCCeEEE---eecCCCeeEEEecCc-cccCCccC
Q 016974 138 LNSPTDKDGNLPVSRML-----SGHKGYVSCCQYVPDEDTHLITSSGDQTCVL---WDITTGLRTSVFGGE-FQSGHTAD 208 (379)
Q Consensus 138 ~~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~---wd~~~~~~~~~~~~~-~~~~h~~~ 208 (379)
++.-..+....+..... ..-...++++.|.+.+...++.|+.+|.|.- ++...... ..+... ....|.+.
T Consensus 322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~-~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE-VSYKGHSTFITHIGP 400 (555)
T ss_pred ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc-ccccccccccccCcc
Confidence 87533221111111101 0112357889999988889999999999876 22222220 011111 12467889
Q ss_pred eEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccC-CCEEEEeeCCCeEEEEECCCCceeEE
Q 016974 209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD-GNRFGTGSDDGTCRLFDIRTGHQLQV 287 (379)
Q Consensus 209 v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~-g~~l~s~s~D~~i~iwd~~~~~~~~~ 287 (379)
|.++.++|-..++|++++ |-+++||.......++..+..+...|++++|||. ...|+++..||.|.+||+.....-..
T Consensus 401 v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv 479 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPV 479 (555)
T ss_pred eEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCc
Confidence 999999998778888877 8999999877444677777788888999999996 45678888899999999976543322
Q ss_pred EeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCC
Q 016974 288 YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327 (379)
Q Consensus 288 ~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~ 327 (379)
...... ......+.|+++|+.|++|+..|++++|++.
T Consensus 480 ~s~~~~---~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 480 LSQKVC---SPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred cccccc---ccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 222111 2345678889999999999999999999974
No 183
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.82 E-value=7.2e-19 Score=155.75 Aligned_cols=263 Identities=21% Similarity=0.320 Sum_probs=182.5
Q ss_pred cccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEE-C-------CCCCEEEEeeCCCcEEEE
Q 016974 65 GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAF-S-------PTGQSVACGGLDSVCSIF 136 (379)
Q Consensus 65 gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~-s-------~~g~~l~~~~~d~~i~iw 136 (379)
.|...|.|+.|+.....+.+ +.|..+.+|.-.+......+..+...+....+ - .....++.++.||.+.|.
T Consensus 12 r~~e~vc~v~w~~~eei~~~-~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFV-SDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEe-ccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 57777889999876655554 55555666654444433333333333332221 0 123578888999999887
Q ss_pred EcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeC
Q 016974 137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG 216 (379)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 216 (379)
+-.. .+.+....|.+++.+-.|+|++ .-|++++.||.|++|.-....+... ......|.+++|.|
T Consensus 91 ~k~~--------rVE~sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSrsGMLRStl------~Q~~~~v~c~~W~p 155 (737)
T KOG1524|consen 91 NKSA--------RVERSISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSRSGMLRSTV------VQNEESIRCARWAP 155 (737)
T ss_pred cccc--------hhhhhhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEeccchHHHHH------hhcCceeEEEEECC
Confidence 6442 2445677899999999999986 4699999999999998543332221 12345799999999
Q ss_pred CCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCC
Q 016974 217 SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENE 296 (379)
Q Consensus 217 ~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~ 296 (379)
...+.+.+.+. .+.+=.+.... .+-..++|.+-|.++.|+|..+.+++|++|-..++||-. |..+... ..+
T Consensus 156 ~S~~vl~c~g~--h~~IKpL~~n~-k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S-----~~~ 226 (737)
T KOG1524|consen 156 NSNSIVFCQGG--HISIKPLAANS-KIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTS-----AAE 226 (737)
T ss_pred CCCceEEecCC--eEEEeeccccc-ceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccC-----Chh
Confidence 77777776553 44444444333 344678999999999999999999999999999999965 4443221 223
Q ss_pred CCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEE
Q 016974 297 IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKI 369 (379)
Q Consensus 297 ~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~v 369 (379)
..+|++++|+|+ +.++.|+.+ +++ +.+...+.|..++||+||..++.|...|.+.+
T Consensus 227 ey~ITSva~npd-~~~~v~S~n-t~R---------------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 227 EYAITSVAFNPE-KDYLLWSYN-TAR---------------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred ccceeeeeeccc-cceeeeeee-eee---------------ecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 457999999999 665655533 222 12445678999999999999999988887643
No 184
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.80 E-value=3.7e-18 Score=154.93 Aligned_cols=249 Identities=16% Similarity=0.293 Sum_probs=180.2
Q ss_pred ccCCcceeEeeccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEe-ecCCcceEEEEECCCCCEEEEeeC
Q 016974 51 SFGPTDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAI-KLPCAWVMTCAFSPTGQSVACGGL 129 (379)
Q Consensus 51 ~~~~~~~~~~~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~~~~ 129 (379)
-|.+.+.....+|+||.+.|+|++|+.||+.+|||+.|..|.+|...- .-.+ ..|...+.++.|+|-.+.|++++-
T Consensus 37 iyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl---EG~LkYSH~D~IQCMsFNP~~h~LasCsL 113 (1081)
T KOG1538|consen 37 VYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL---EGILKYSHNDAIQCMSFNPITHQLASCSL 113 (1081)
T ss_pred EEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc---cceeeeccCCeeeEeecCchHHHhhhcch
Confidence 466777677789999999999999999999999999999999998432 2222 357788999999999999998876
Q ss_pred CCcEEEEEcCCCCCCCCCcceeeeeccc--ccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCcc
Q 016974 130 DSVCSIFNLNSPTDKDGNLPVSRMLSGH--KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA 207 (379)
Q Consensus 130 d~~i~iw~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~ 207 (379)
.. .-+|....+. ...| ...|.+|+|..++ .+|+-|-.+|+|.+-+.........- . ..+...
T Consensus 114 sd-FglWS~~qK~-----------V~K~kss~R~~~CsWtnDG-qylalG~~nGTIsiRNk~gEek~~I~-R--pgg~Ns 177 (1081)
T KOG1538|consen 114 SD-FGLWSPEQKS-----------VSKHKSSSRIICCSWTNDG-QYLALGMFNGTISIRNKNGEEKVKIE-R--PGGSNS 177 (1081)
T ss_pred hh-ccccChhhhh-----------HHhhhhheeEEEeeecCCC-cEEEEeccCceEEeecCCCCcceEEe-C--CCCCCC
Confidence 53 4577654321 1122 2357788998764 78999999999998865433332221 1 135667
Q ss_pred CeEEEEEeCCCC----cEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCc
Q 016974 208 DVLSVSISGSNS----RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH 283 (379)
Q Consensus 208 ~v~~~~~~~~~~----~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~ 283 (379)
+|.+++|+|..+ ..++...+..++-++.+.. +.+..-+.-+-...|+++.|+|.++..|+.|+.+++|- +.|-
T Consensus 178 piwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG--~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~Gv 254 (1081)
T KOG1538|consen 178 PIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG--KQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGV 254 (1081)
T ss_pred CceEEEecCCCCCCccceEEEEeccceeEEEEecc--eeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCe
Confidence 899999998543 3455555555555555431 11211112233467899999999999999999999997 4454
Q ss_pred eeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeC
Q 016974 284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326 (379)
Q Consensus 284 ~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~ 326 (379)
.+.+.-+ ...+|..++..|++++++.|..||+|-.|++
T Consensus 255 rLGTvg~-----~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 255 RLGTVGE-----QDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred EEeeccc-----cceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 4433321 2357999999999999999999999999975
No 185
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.80 E-value=1.5e-17 Score=137.09 Aligned_cols=252 Identities=19% Similarity=0.344 Sum_probs=177.8
Q ss_pred eEEEEEC--CC-CCEEEEeeC----CCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCC----ceEEEeeCC
Q 016974 112 VMTCAFS--PT-GQSVACGGL----DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED----THLITSSGD 180 (379)
Q Consensus 112 v~~~~~s--~~-g~~l~~~~~----d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~----~~l~s~~~d 180 (379)
+.++.|+ |+ ...||.|+. .+.|.|-.++... ++.. ...-..|.-+++.+.|.|+.. ..|++ .+
T Consensus 47 lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s---~e~~-~~a~fd~~YP~tK~~wiPd~~g~~pdlLAT--s~ 120 (364)
T KOG0290|consen 47 LYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDS---GELV-EDANFDHPYPVTKLMWIPDSKGVYPDLLAT--SS 120 (364)
T ss_pred eeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCC---Ccee-ccCCCCCCCCccceEecCCccccCcchhhc--cc
Confidence 4556665 22 346777764 4556666665321 2221 112246888999999999753 23443 45
Q ss_pred CeEEEeecCCCee----EEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCC--ccceEEEecccCCee
Q 016974 181 QTCVLWDITTGLR----TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA--SRAVRTFHGHEGDVN 254 (379)
Q Consensus 181 ~~i~~wd~~~~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~--~~~~~~~~~h~~~v~ 254 (379)
..+|+|.+..... ...+.......+.+++++.+|+.-+.+++.+++-|-+..|||+... .....++-+|...|.
T Consensus 121 D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~ 200 (364)
T KOG0290|consen 121 DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVY 200 (364)
T ss_pred CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCccee
Confidence 6899998864211 1112222345677899999999999999999999999999999864 224567889999999
Q ss_pred EEEEccCC-CEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCC-CEEEEEEecC-cEEEEeCCCc-e
Q 016974 255 TVKFFPDG-NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG-RLLFAGYSNG-DCYVWDTLLA-K 330 (379)
Q Consensus 255 ~v~~sp~g-~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g-~~l~sg~~dg-~i~iwd~~~~-~ 330 (379)
.++|...+ +.|||.|.||++|+||+|..+.-..++.. .....+...++++++. +|+|+-..|+ .|.|-|++.. .
T Consensus 201 DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~--p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t 278 (364)
T KOG0290|consen 201 DIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYED--PSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT 278 (364)
T ss_pred EEEeccCccceEEEecCCCcEEEEEecccccceEEecC--CCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc
Confidence 99999854 57899999999999999976543333321 1113457788888855 4677655544 7999998654 3
Q ss_pred EEEecccccCCccCceeEEEECCC-CCeEEEeeCCCcEEEEecCce
Q 016974 331 VVLNLGSLQNSHEGRITCLGLSAD-GSALCTGSWDTNLKIWAFGGY 375 (379)
Q Consensus 331 ~~~~~~~~~~~h~~~v~~~~~s~d-~~~l~s~s~D~~i~vw~~~~~ 375 (379)
.+..+ .+|.+.|+.++|.|. ...|+|++.|..+.+||+.+.
T Consensus 279 pva~L----~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 279 PVARL----RNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred ceehh----hcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 34444 789999999999996 578999999999999999874
No 186
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.79 E-value=2.8e-18 Score=154.83 Aligned_cols=247 Identities=22% Similarity=0.326 Sum_probs=169.1
Q ss_pred ECCCCCEEEE--eeCCCcEEEEEcCCCCC-CCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCe-
Q 016974 117 FSPTGQSVAC--GGLDSVCSIFNLNSPTD-KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL- 192 (379)
Q Consensus 117 ~s~~g~~l~~--~~~d~~i~iw~~~~~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~- 192 (379)
|..+.+.+|. +|.-|.|-||+++.+.. +++.++- +. ....|+.+.|.|.++..|+.++.||.|++|.+..+-
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~---l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl 662 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPG---LF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGL 662 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccc---cc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCC
Confidence 4444555554 46678999999986432 2232221 11 234689999999988899999999999999986541
Q ss_pred -eEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCC
Q 016974 193 -RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD 271 (379)
Q Consensus 193 -~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D 271 (379)
...........+|...|+++.|+|...++|++++.|-+|++||+++. .....+.+|.+.|..++|||+|+.+|+.+.|
T Consensus 663 ~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~-~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKD 741 (1012)
T KOG1445|consen 663 PENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANA-KLYSRLVGHTDQIFGIAWSPDGRRIATVCKD 741 (1012)
T ss_pred CcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhh-hhhheeccCcCceeEEEECCCCcceeeeecC
Confidence 11111122336899999999999998999999999999999999976 4556789999999999999999999999999
Q ss_pred CeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEec----CcEEEEeCCCce--EEEecccccCCccCc
Q 016974 272 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN----GDCYVWDTLLAK--VVLNLGSLQNSHEGR 345 (379)
Q Consensus 272 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~d----g~i~iwd~~~~~--~~~~~~~~~~~h~~~ 345 (379)
|+|++|+.++++... +.. .+.- ...-..+.|.-+|+++++.+.| ..|.+||..+.. .+.+. .+....+
T Consensus 742 g~~rVy~Prs~e~pv-~Eg-~gpv-gtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~-~lDvaps-- 815 (1012)
T KOG1445|consen 742 GTLRVYEPRSREQPV-YEG-KGPV-GTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQ-VLDVAPS-- 815 (1012)
T ss_pred ceEEEeCCCCCCCcc-ccC-CCCc-cCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceee-eecccCc--
Confidence 999999998875421 111 1110 1122456777799988776544 478889864322 22111 1111111
Q ss_pred eeEEEECCCCC-eEEEeeCCCcEEEEecCc
Q 016974 346 ITCLGLSADGS-ALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 346 v~~~~~s~d~~-~l~s~s~D~~i~vw~~~~ 374 (379)
+.--.+.+|.+ .+++|-.|.+|++|.+--
T Consensus 816 ~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 816 PLVPHYDYDSNVLFLTGKGDRFVNMYEVIY 845 (1012)
T ss_pred cccccccCCCceEEEecCCCceEEEEEecC
Confidence 11112345655 455788899999998643
No 187
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.79 E-value=3e-17 Score=153.20 Aligned_cols=237 Identities=15% Similarity=0.175 Sum_probs=159.3
Q ss_pred CCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCC---CcEEEEEcCCCCCCCCCcceeeeecccccceEEE
Q 016974 88 DGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD---SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCC 164 (379)
Q Consensus 88 D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 164 (379)
+..|.+||.. +.....+..+...+...+|+|+|+.|+.++.+ ..+.+||+.... ......+.+|. ...
T Consensus 183 ~~~i~i~d~d-g~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~-----~~~l~~~~g~~---~~~ 253 (429)
T PRK01742 183 PYEVRVADYD-GFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGA-----RKVVASFRGHN---GAP 253 (429)
T ss_pred eEEEEEECCC-CCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCc-----eEEEecCCCcc---Cce
Confidence 5789999975 44455666667778999999999999988754 369999986432 11222233443 357
Q ss_pred EEecCCCceEEEeeCCCeEEEe--ecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccc
Q 016974 165 QYVPDEDTHLITSSGDQTCVLW--DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA 242 (379)
Q Consensus 165 ~~~~~~~~~l~s~~~d~~i~~w--d~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~ 242 (379)
+|+|++...+++.+.+|.+.|| |+.++.... + ..+...+....|+|.+..+++++..++..++|++......
T Consensus 254 ~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~-l-----t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~ 327 (429)
T PRK01742 254 AFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQ-L-----TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG 327 (429)
T ss_pred eECCCCCEEEEEEecCCcEEEEEEECCCCCeEe-e-----ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 8999875444445578876665 655554322 2 2344456778899854445556667888999987643333
Q ss_pred eEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEE
Q 016974 243 VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCY 322 (379)
Q Consensus 243 ~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~ 322 (379)
...+ .+.. ...+|+|||++|+..+.++. .+||+.++...... .. . ....+.|+|+|++|+.++.+|.+.
T Consensus 328 ~~~l-~~~~--~~~~~SpDG~~ia~~~~~~i-~~~Dl~~g~~~~lt-~~-~-----~~~~~~~sPdG~~i~~~s~~g~~~ 396 (429)
T PRK01742 328 ASLV-GGRG--YSAQISADGKTLVMINGDNV-VKQDLTSGSTEVLS-ST-F-----LDESPSISPNGIMIIYSSTQGLGK 396 (429)
T ss_pred eEEe-cCCC--CCccCCCCCCEEEEEcCCCE-EEEECCCCCeEEec-CC-C-----CCCCceECCCCCEEEEEEcCCCce
Confidence 3333 3443 45789999999998887764 55999887654322 11 1 124578999999999999999888
Q ss_pred EEeC--CCceEEEecccccCCccCceeEEEECCC
Q 016974 323 VWDT--LLAKVVLNLGSLQNSHEGRITCLGLSAD 354 (379)
Q Consensus 323 iwd~--~~~~~~~~~~~~~~~h~~~v~~~~~s~d 354 (379)
+|++ ..++....+ ..|.+.+...+|+|-
T Consensus 397 ~l~~~~~~G~~~~~l----~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 397 VLQLVSADGRFKARL----PGSDGQVKFPAWSPY 426 (429)
T ss_pred EEEEEECCCCceEEc----cCCCCCCCCcccCCC
Confidence 8774 245555555 457778888999984
No 188
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=2.9e-17 Score=147.43 Aligned_cols=252 Identities=14% Similarity=0.195 Sum_probs=183.9
Q ss_pred eeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCC
Q 016974 102 THAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 181 (379)
Q Consensus 102 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~ 181 (379)
...+++|.+.|.++...|.|..|++|+.||+++||.+.+.. +.++.. ..+.|.|++|.|..+..++..+...
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgR-------cvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~ 464 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGR-------CVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGE 464 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecce-------EEEEEe-ecceeEEEEecCCCCceeEEEEecC
Confidence 34567899999999999999999999999999999997643 333322 2457999999998765555555555
Q ss_pred eEEEeecCCCeeE-----------------------EEecC---------ccccCCccCeEEEEEeCCCCcEEEEecCC-
Q 016974 182 TCVLWDITTGLRT-----------------------SVFGG---------EFQSGHTADVLSVSISGSNSRMFVSGSCD- 228 (379)
Q Consensus 182 ~i~~wd~~~~~~~-----------------------~~~~~---------~~~~~h~~~v~~~~~~~~~~~~l~sg~~d- 228 (379)
.+.+-+..-|.++ ..... ...-.|...|..+.|+. .+.||++...+
T Consensus 465 ~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-kGDYlatV~~~~ 543 (733)
T KOG0650|consen 465 CVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-KGDYLATVMPDS 543 (733)
T ss_pred ceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-CCceEEEeccCC
Confidence 5555543222100 00000 01124677889999995 78899886654
Q ss_pred --CcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEc
Q 016974 229 --STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS 306 (379)
Q Consensus 229 --~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs 306 (379)
..|.|.++... ....-|+...+.|.++.|+|.-.+|+.++. ..|+|||+..+..++.+.. ...+|..++.+
T Consensus 544 ~~~~VliHQLSK~-~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~t-----g~kwiS~msih 616 (733)
T KOG0650|consen 544 GNKSVLIHQLSKR-KSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLT-----GSKWISSMSIH 616 (733)
T ss_pred CcceEEEEecccc-cccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhc-----CCeeeeeeeec
Confidence 46888887643 222334445677999999999888888776 5799999987655443322 23568999999
Q ss_pred cCCCEEEEEEecCcEEEEeCCCce-EEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecC
Q 016974 307 ISGRLLFAGYSNGDCYVWDTLLAK-VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 373 (379)
Q Consensus 307 ~~g~~l~sg~~dg~i~iwd~~~~~-~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~ 373 (379)
|.|.-|+.|+.|+.+..||+.... ...++ ..|...|..++|++--..+||||.||++.||--.
T Consensus 617 p~GDnli~gs~d~k~~WfDldlsskPyk~l----r~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~ 680 (733)
T KOG0650|consen 617 PNGDNLILGSYDKKMCWFDLDLSSKPYKTL----RLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGM 680 (733)
T ss_pred CCCCeEEEecCCCeeEEEEcccCcchhHHh----hhhhhhhhhhhhccccceeeeecCCCcEEEEeee
Confidence 999999999999999999986543 33444 6799999999999999999999999999998633
No 189
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=9.6e-18 Score=144.85 Aligned_cols=204 Identities=18% Similarity=0.269 Sum_probs=149.0
Q ss_pred EEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcce
Q 016974 71 YSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPV 150 (379)
Q Consensus 71 ~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~ 150 (379)
.+++|+++|..|++|+.||++|||+...-..+.....|...|..+.|+|||+.|++.+.| ..+||+.++...-...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~--- 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK--- 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc---
Confidence 679999999999999999999999987777777777788999999999999999999999 8999999864211000
Q ss_pred eeeecccccceEEEEEecCC--Cc-eEE-EeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEec
Q 016974 151 SRMLSGHKGYVSCCQYVPDE--DT-HLI-TSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS 226 (379)
Q Consensus 151 ~~~~~~h~~~v~~~~~~~~~--~~-~l~-s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~ 226 (379)
+-..-.--...|.|+.++ +. +++ ....-+.|+.||+..-.....+.......-...+.+++.++ ++++++.|+
T Consensus 224 --t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~-dGkf~AlGT 300 (398)
T KOG0771|consen 224 --TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD-DGKFLALGT 300 (398)
T ss_pred --CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC-CCcEEEEec
Confidence 001112223456776553 12 222 33344567777654321111111111112234788999996 889999999
Q ss_pred CCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCC
Q 016974 227 CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 281 (379)
Q Consensus 227 ~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~ 281 (379)
.||.|-|++..........-+.|...|+.+.|+||.+++++.+.|..+.|.-+.-
T Consensus 301 ~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 301 MDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred cCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999999998876555666678999999999999999999999999998887654
No 190
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.77 E-value=1.3e-17 Score=147.92 Aligned_cols=207 Identities=21% Similarity=0.346 Sum_probs=160.7
Q ss_pred CeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeeccccc
Q 016974 80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG 159 (379)
Q Consensus 80 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~ 159 (379)
..|+.++.||.+.|-+- .++....+..|++.+.+-.|+|+|.-|+++|.||.|++|.-.. - ...++.....
T Consensus 76 d~~~i~s~DGkf~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG------M--LRStl~Q~~~ 146 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG------M--LRSTVVQNEE 146 (737)
T ss_pred ceEEEEcCCceEEEecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc------h--HHHHHhhcCc
Confidence 46888999999999874 4667778889999999999999999999999999999998542 1 2233445567
Q ss_pred ceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCC
Q 016974 160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239 (379)
Q Consensus 160 ~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~ 239 (379)
+|+|++|.|+....+.+.+..-.|+-...... .+.. ..|.+-|.+++|++ ..+++++|+.|-..++||..
T Consensus 147 ~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k-~i~W------kAHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~-- 216 (737)
T KOG1524|consen 147 SIRCARWAPNSNSIVFCQGGHISIKPLAANSK-IIRW------RAHDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQ-- 216 (737)
T ss_pred eeEEEEECCCCCceEEecCCeEEEeecccccc-eeEE------eccCcEEEEeecCc-cccceeecCCceeEEeeccc--
Confidence 89999999998877777766555554433221 1111 57999999999997 56799999999999999975
Q ss_pred ccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecC
Q 016974 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG 319 (379)
Q Consensus 240 ~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg 319 (379)
+..+.....|+-+|++++|+|+ ..++.+|. ++.|+=.+ ..+.|..++||+||.-+++|...|
T Consensus 217 G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~~~p----------------~~GSifnlsWS~DGTQ~a~gt~~G 278 (737)
T KOG1524|consen 217 GANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARFSSP----------------RVGSIFNLSWSADGTQATCGTSTG 278 (737)
T ss_pred CcccccCChhccceeeeeeccc-cceeeeee-eeeeecCC----------------CccceEEEEEcCCCceeeccccCc
Confidence 4567777889999999999999 56666664 35552221 234588999999999999999999
Q ss_pred cEEE
Q 016974 320 DCYV 323 (379)
Q Consensus 320 ~i~i 323 (379)
.+.+
T Consensus 279 ~v~~ 282 (737)
T KOG1524|consen 279 QLIV 282 (737)
T ss_pred eEEE
Confidence 7654
No 191
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=7.9e-16 Score=144.17 Aligned_cols=296 Identities=18% Similarity=0.261 Sum_probs=198.1
Q ss_pred cccccEEEEEeeCCCCeEEEEcCCCcEEEEECCC----CceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCC
Q 016974 65 GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT----SQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS 140 (379)
Q Consensus 65 gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~----~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~ 140 (379)
.|.-.++|.+++|.++++|+|..||.|.+|.-.. ....+.+.-|...|.+++|+++|.+|.+||..+...+|.+.+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 3666689999999999999999999999996432 223455677888999999999999999999999999999987
Q ss_pred CCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCc------cccCCccCeEEEEE
Q 016974 141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE------FQSGHTADVLSVSI 214 (379)
Q Consensus 141 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~------~~~~h~~~v~~~~~ 214 (379)
+.. ..+..-...|..+.++|+++ +.+....|+.|.+-...+......+.+- ......+-.+.+.+
T Consensus 283 ~~k--------qfLPRLgs~I~~i~vS~ds~-~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~i 353 (792)
T KOG1963|consen 283 GKK--------QFLPRLGSPILHIVVSPDSD-LYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSI 353 (792)
T ss_pred CCc--------ccccccCCeeEEEEEcCCCC-eEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEE
Confidence 541 11223346788999999875 4555567999999876543222222110 01112344566677
Q ss_pred eCCCCcEEEEecCCCcEEEEEccCCccceEEEe-----c------ccCCeeEEEEccCCCEEEEee--------CCC--e
Q 016974 215 SGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-----G------HEGDVNTVKFFPDGNRFGTGS--------DDG--T 273 (379)
Q Consensus 215 ~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~-----~------h~~~v~~v~~sp~g~~l~s~s--------~D~--~ 273 (379)
+| ..+.++-.+..|.|.+||+.+... +..++ . +.-.+++++.+..|.+++|.- .|| .
T Consensus 354 dp-r~~~~vln~~~g~vQ~ydl~td~~-i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~ 431 (792)
T KOG1963|consen 354 DP-RTNSLVLNGHPGHVQFYDLYTDST-IYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVS 431 (792)
T ss_pred cC-CCCceeecCCCceEEEEeccccce-eeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEE
Confidence 76 334556678889999999875432 22221 1 122477888888899998763 233 4
Q ss_pred EEEEECCCCceeEE----EeeccCCCCCCCeEEEEEccCCC-EEEEEEecCcEEEEeCCCceEE------EecccccCCc
Q 016974 274 CRLFDIRTGHQLQV----YYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVV------LNLGSLQNSH 342 (379)
Q Consensus 274 i~iwd~~~~~~~~~----~~~~~~~~~~~~v~~~~fs~~g~-~l~sg~~dg~i~iwd~~~~~~~------~~~~~~~~~h 342 (379)
+|+|--....+--. ...+|+. ..+..+.+++... ..++++.||.+++|-....+.+ ..+...-..|
T Consensus 432 LKFW~~n~~~kt~~L~T~I~~PH~~---~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~ 508 (792)
T KOG1963|consen 432 LKFWQYNPNSKTFILNTKINNPHGN---AFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYH 508 (792)
T ss_pred EEEEEEcCCcceeEEEEEEecCCCc---eeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccc
Confidence 77886544332221 2223322 2333444444444 8899999999999976322211 1111111357
Q ss_pred cCceeEEEECCCCCeEEEeeCCCcEEEEecCce
Q 016974 343 EGRITCLGLSADGSALCTGSWDTNLKIWAFGGY 375 (379)
Q Consensus 343 ~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~~ 375 (379)
..+++.++|+.||+.|+ .|.|++|.+||++..
T Consensus 509 k~~i~a~~fs~dGslla-~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 509 KTPITALCFSQDGSLLA-VSFDDTITIWDYDTK 540 (792)
T ss_pred cCcccchhhcCCCcEEE-EecCCEEEEecCCCh
Confidence 88999999999997655 778999999999873
No 192
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=4.7e-17 Score=154.70 Aligned_cols=249 Identities=17% Similarity=0.238 Sum_probs=170.9
Q ss_pred cEEEEEeeC--CCCeEEEEcCCCcEEEEECCCCc--e---eeEee-------cCCcceEEEEECCCCCEEEEeeCCCcEE
Q 016974 69 KVYSLDWTS--ERNRIVSASQDGRLIVWNALTSQ--K---THAIK-------LPCAWVMTCAFSPTGQSVACGGLDSVCS 134 (379)
Q Consensus 69 ~v~~~~~~~--~~~~l~s~s~D~~v~iwd~~~~~--~---~~~~~-------~~~~~v~~~~~s~~g~~l~~~~~d~~i~ 134 (379)
.|+.+.+-. |..++++|+.||.||||+-.... . +.... ...+.-.-++|-....+|+++|.-..|+
T Consensus 1111 ~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IR 1190 (1387)
T KOG1517|consen 1111 RVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIR 1190 (1387)
T ss_pred ccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEE
Confidence 488888765 44679999999999999754321 1 11111 1111123456777778888888899999
Q ss_pred EEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccC--eEEE
Q 016974 135 IFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTAD--VLSV 212 (379)
Q Consensus 135 iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~--v~~~ 212 (379)
|||.... ..+.....+-...|+++.-....++.++.|-.||.|++||.+......... ....|++. |..+
T Consensus 1191 IWDa~~E------~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~--~~R~h~~~~~Iv~~ 1262 (1387)
T KOG1517|consen 1191 IWDAHKE------QVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVC--VYREHNDVEPIVHL 1262 (1387)
T ss_pred EEecccc------eeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccce--eecccCCcccceeE
Confidence 9998642 112222334445566665544446789999999999999987653321111 11567766 8888
Q ss_pred EEeCCCCcEEEEecCCCcEEEEEccCC-ccceEEEeccc--C-CeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEE
Q 016974 213 SISGSNSRMFVSGSCDSTARLWDTRVA-SRAVRTFHGHE--G-DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY 288 (379)
Q Consensus 213 ~~~~~~~~~l~sg~~d~~i~vwd~~~~-~~~~~~~~~h~--~-~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~ 288 (379)
.+.+.+-..+++|+.||.|++||+|.. .........|- + ..+++..|+....+|+|+. +.|+||++. |+++..+
T Consensus 1263 slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~ 1340 (1387)
T KOG1517|consen 1263 SLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNII 1340 (1387)
T ss_pred EeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhccc
Confidence 888755556899999999999999973 22222333333 3 5899999999999999998 999999986 4444333
Q ss_pred ee--ccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCC
Q 016974 289 YQ--QHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327 (379)
Q Consensus 289 ~~--~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~ 327 (379)
.. .......+.++|++|+|..-++|+|+.|..|.||...
T Consensus 1341 k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1341 KYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred ccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecC
Confidence 21 1111223467999999999999999999999999743
No 193
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.76 E-value=3.6e-15 Score=124.64 Aligned_cols=239 Identities=15% Similarity=0.201 Sum_probs=155.1
Q ss_pred EEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEE-eeCC------CcEEEEEcCCCC
Q 016974 70 VYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVAC-GGLD------SVCSIFNLNSPT 142 (379)
Q Consensus 70 v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~d------~~i~iw~~~~~~ 142 (379)
..+++|+.|..-++.|..+| .|||+...-+.........+...-+..---.++++- ||.+ ..+.||| +..
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWD-D~k- 84 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWD-DLK- 84 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEe-ccc-
Confidence 45699999988887776665 999998754332222222111111100111233333 3333 4688998 211
Q ss_pred CCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCC-eeEEEecCccccCCccCeEEEEEeCCCCcE
Q 016974 143 DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVSISGSNSRM 221 (379)
Q Consensus 143 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 221 (379)
......+ ....+|.++.+.++ .++. -..+.|.+|...+. .....+.. ......+.++.... +..+
T Consensus 85 -----~~~i~el-~f~~~I~~V~l~r~---riVv-vl~~~I~VytF~~n~k~l~~~et---~~NPkGlC~~~~~~-~k~~ 150 (346)
T KOG2111|consen 85 -----ERCIIEL-SFNSEIKAVKLRRD---RIVV-VLENKIYVYTFPDNPKLLHVIET---RSNPKGLCSLCPTS-NKSL 150 (346)
T ss_pred -----CcEEEEE-EeccceeeEEEcCC---eEEE-EecCeEEEEEcCCChhheeeeec---ccCCCceEeecCCC-CceE
Confidence 1111111 23567888888764 2333 46789999998743 33333321 12223344444332 2333
Q ss_pred EE-EecCCCcEEEEEccCCcc-ceEEEecccCCeeEEEEccCCCEEEEeeCCCe-EEEEECCCCceeEEEeeccCCCCCC
Q 016974 222 FV-SGSCDSTARLWDTRVASR-AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT-CRLFDIRTGHQLQVYYQQHGENEIP 298 (379)
Q Consensus 222 l~-sg~~d~~i~vwd~~~~~~-~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~-i~iwd~~~~~~~~~~~~~~~~~~~~ 298 (379)
|+ -|-.-|.|+|-|+..... +...+.+|.+.|.|++.+.+|..+||+|..|+ |||||..+|..++.+.... ...
T Consensus 151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~---d~A 227 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV---DRA 227 (346)
T ss_pred EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC---chh
Confidence 33 355668999999875433 34677899999999999999999999999998 8999999999998875533 234
Q ss_pred CeEEEEEccCCCEEEEEEecCcEEEEeCCC
Q 016974 299 HVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (379)
Q Consensus 299 ~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~ 328 (379)
.|.+++|||++.+||++++.|+|+||.+..
T Consensus 228 ~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 228 DIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred eEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 699999999999999999999999997643
No 194
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=7.4e-16 Score=144.36 Aligned_cols=305 Identities=14% Similarity=0.208 Sum_probs=202.7
Q ss_pred eeEeeccccccccEEEEEeeCCC---CeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECC----CCCEEEEeeC
Q 016974 57 LVCCRTLQGHAGKVYSLDWTSER---NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP----TGQSVACGGL 129 (379)
Q Consensus 57 ~~~~~~l~gH~~~v~~~~~~~~~---~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~----~g~~l~~~~~ 129 (379)
..|++.|.+|..+++.+.+.|.. .++++++.||+|++||...+..++++..+.. +..+.+.| .. ..+..+.
T Consensus 47 g~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~-v~~~~~~~~~a~~s-~~~~~s~ 124 (792)
T KOG1963|consen 47 GECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLP-VHALVYKPAQADIS-ANVYVSV 124 (792)
T ss_pred HhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCc-eeEEEechhHhCcc-ceeEeec
Confidence 35777899999999999998754 4677999999999999999998888766543 33332322 11 2222222
Q ss_pred CCcEEEEEcCCCCCCCCCcce--------eeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCcc
Q 016974 130 DSVCSIFNLNSPTDKDGNLPV--------SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF 201 (379)
Q Consensus 130 d~~i~iw~~~~~~~~~~~~~~--------~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 201 (379)
+....+.-........+..-. ...+..|.- -.++.+.+.+ .+.....+..+.+|....+. ........
T Consensus 125 ~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~g--e~~~i~~~~~~~~~~v~~~~-~~~~~~~~ 200 (792)
T KOG1963|consen 125 EDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSG--EFKGIVHMCKIHIYFVPKHT-KHTSSRDI 200 (792)
T ss_pred ccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCc--eEEEEEEeeeEEEEEecccc-eeeccchh
Confidence 211111111110000000000 011122211 1344555543 35555677889999988755 22222233
Q ss_pred ccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEc-c--CCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEE
Q 016974 202 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT-R--VASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD 278 (379)
Q Consensus 202 ~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~-~--~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd 278 (379)
...|...+.+.+++| +++++++|..||.|.+|.- . ........++=|...|++++|+++|.+|.||+..+-+-+|.
T Consensus 201 ~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq 279 (792)
T KOG1963|consen 201 TVHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQ 279 (792)
T ss_pred hhhhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEe
Confidence 456777788899997 7889999999999999953 2 12234556777889999999999999999999999999999
Q ss_pred CCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEeccccc-------CCccCceeEEEE
Q 016974 279 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ-------NSHEGRITCLGL 351 (379)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-------~~h~~~v~~~~~ 351 (379)
+.+++ +.+.. .-.++|..+.+|||+.+.+....|..|++-...+-....++.++. ....+..+.+++
T Consensus 280 ~~T~~--kqfLP----RLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~i 353 (792)
T KOG1963|consen 280 LETGK--KQFLP----RLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSI 353 (792)
T ss_pred ecCCC--ccccc----ccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEE
Confidence 99887 23322 224579999999999999999999999998754433322222221 123456788899
Q ss_pred CCCCCeEEEeeCCCcEEEEecCc
Q 016974 352 SADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 352 s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
+|--+.++-.+.-+.|.+|++-.
T Consensus 354 dpr~~~~vln~~~g~vQ~ydl~t 376 (792)
T KOG1963|consen 354 DPRTNSLVLNGHPGHVQFYDLYT 376 (792)
T ss_pred cCCCCceeecCCCceEEEEeccc
Confidence 99777778888999999999755
No 195
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.76 E-value=4.7e-15 Score=134.14 Aligned_cols=252 Identities=11% Similarity=0.137 Sum_probs=156.9
Q ss_pred ccEEEEEeeCCCCeEEEE-cCCCcEEEEECC-CCce--eeEeecCCcceEEEEECCCCCEEEEeeC-CCcEEEEEcCCCC
Q 016974 68 GKVYSLDWTSERNRIVSA-SQDGRLIVWNAL-TSQK--THAIKLPCAWVMTCAFSPTGQSVACGGL-DSVCSIFNLNSPT 142 (379)
Q Consensus 68 ~~v~~~~~~~~~~~l~s~-s~D~~v~iwd~~-~~~~--~~~~~~~~~~v~~~~~s~~g~~l~~~~~-d~~i~iw~~~~~~ 142 (379)
+....++++|++++|+.+ ..++.|.+|++. +++. ...... ......++|+|+|+++++++. ++.+.+|+++...
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~-~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g 113 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPL-PGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDG 113 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecC-CCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCC
Confidence 456678999999988665 468899999986 3332 122222 234567999999998888775 8889999996421
Q ss_pred CCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEe-cCccccCCccCeEEEEEeCCCCcE
Q 016974 143 DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF-GGEFQSGHTADVLSVSISGSNSRM 221 (379)
Q Consensus 143 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~ 221 (379)
.. ......+.+ ......+.++|++...+++...++.|.+||+.+...+... ..............+.++| ++++
T Consensus 114 ~~---~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~p-dg~~ 188 (330)
T PRK11028 114 IP---VAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHP-NQQY 188 (330)
T ss_pred CC---CCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECC-CCCE
Confidence 11 011122222 2235667899987655677778899999999763221100 0000001122345678887 5556
Q ss_pred EEEec-CCCcEEEEEccCCc---cceEEEecc------cCCeeEEEEccCCCEEEEee-CCCeEEEEECCCCceeEEEee
Q 016974 222 FVSGS-CDSTARLWDTRVAS---RAVRTFHGH------EGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQLQVYYQ 290 (379)
Q Consensus 222 l~sg~-~d~~i~vwd~~~~~---~~~~~~~~h------~~~v~~v~~sp~g~~l~s~s-~D~~i~iwd~~~~~~~~~~~~ 290 (379)
++++. .++.|.+||+.... +.+..+..+ ......+.|+|+|++++++. .+++|.+|++........+..
T Consensus 189 lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~ 268 (330)
T PRK11028 189 AYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEG 268 (330)
T ss_pred EEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeE
Confidence 65554 48999999987321 122222221 11233688999999988875 478999999865332111111
Q ss_pred ccCCCCCCCeEEEEEccCCCEEEEEEe-cCcEEEEeCC
Q 016974 291 QHGENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTL 327 (379)
Q Consensus 291 ~~~~~~~~~v~~~~fs~~g~~l~sg~~-dg~i~iwd~~ 327 (379)
.... ......+.|+|+|++|+++.. +++|.+|+..
T Consensus 269 ~~~~--~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 269 HQPT--ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEec--cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 1111 112457899999999998775 8899999763
No 196
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.75 E-value=3e-16 Score=134.91 Aligned_cols=255 Identities=17% Similarity=0.282 Sum_probs=176.8
Q ss_pred ceeEeeccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECC--------C-----C---ceeeEeecCCcceEEEEECC
Q 016974 56 DLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNAL--------T-----S---QKTHAIKLPCAWVMTCAFSP 119 (379)
Q Consensus 56 ~~~~~~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~--------~-----~---~~~~~~~~~~~~v~~~~~s~ 119 (379)
.+.....|.+|.+.|+++.|+|+|..||||+.+|.|.+|-.. + . .....+++|...+..++|+|
T Consensus 54 ~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~ 133 (434)
T KOG1009|consen 54 KVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP 133 (434)
T ss_pred eEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC
Confidence 455667899999999999999999999999999999999755 2 1 12244567888899999999
Q ss_pred CCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEec-
Q 016974 120 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG- 198 (379)
Q Consensus 120 ~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~- 198 (379)
++.++++++.|..+++||+.... ....+..|...|..++|.|-+ +++++-+.|...+.+.+.........+
T Consensus 134 d~~~l~s~s~dns~~l~Dv~~G~-------l~~~~~dh~~yvqgvawDpl~-qyv~s~s~dr~~~~~~~~~~~~~~~~~~ 205 (434)
T KOG1009|consen 134 DSNFLVSGSVDNSVRLWDVHAGQ-------LLAILDDHEHYVQGVAWDPLN-QYVASKSSDRHPEGFSAKLKQVIKRHGL 205 (434)
T ss_pred CCceeeeeeccceEEEEEeccce-------eEeeccccccccceeecchhh-hhhhhhccCcccceeeeeeeeeeeeeee
Confidence 99999999999999999997532 456678899999999999864 678888889877776665433222211
Q ss_pred -----Ccccc--------CCccC----eEEEEEeCCCCcEEEEecC----CC-----cEEEEEccCCccceEEEecccCC
Q 016974 199 -----GEFQS--------GHTAD----VLSVSISGSNSRMFVSGSC----DS-----TARLWDTRVASRAVRTFHGHEGD 252 (379)
Q Consensus 199 -----~~~~~--------~h~~~----v~~~~~~~~~~~~l~sg~~----d~-----~i~vwd~~~~~~~~~~~~~h~~~ 252 (379)
..... -|... ...++|.| ++.++++.+. .+ ...+++-....++...+.+-..+
T Consensus 206 ~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTP-dG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~ 284 (434)
T KOG1009|consen 206 DIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTP-DGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKP 284 (434)
T ss_pred eEeeecccCCCCcceeeeeecCchhhhhhhcccCC-CCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcc
Confidence 00000 11111 12345554 5666665431 12 22444433334455555555555
Q ss_pred eeEEEEcc------------------CCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEE
Q 016974 253 VNTVKFFP------------------DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA 314 (379)
Q Consensus 253 v~~v~~sp------------------~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~s 314 (379)
+..+.|+| -+..+|.++. ..+.+||.++..++......| -..++.++|+++|.+++.
T Consensus 285 ~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~P~~~v~nih----y~~iTDiaws~dg~~l~v 359 (434)
T KOG1009|consen 285 ALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTLEPLAVVDNIH----YSAITDIAWSDDGSVLLV 359 (434)
T ss_pred eEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEEEeccccccceEEEeeee----eeeecceeecCCCcEEEE
Confidence 66666654 2234555555 479999998877766554433 346999999999999999
Q ss_pred EEecCcEEEE
Q 016974 315 GYSNGDCYVW 324 (379)
Q Consensus 315 g~~dg~i~iw 324 (379)
.+.||...+-
T Consensus 360 SS~DGyCS~v 369 (434)
T KOG1009|consen 360 SSTDGFCSLV 369 (434)
T ss_pred eccCCceEEE
Confidence 9999965553
No 197
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=4.1e-17 Score=137.30 Aligned_cols=261 Identities=15% Similarity=0.228 Sum_probs=170.7
Q ss_pred eeEeeccccccccEEEEEeeC--CCCeEEEEcCCCcEEEEECCCCceeeEeecCC---cceEEEEECCCCCEEEEee---
Q 016974 57 LVCCRTLQGHAGKVYSLDWTS--ERNRIVSASQDGRLIVWNALTSQKTHAIKLPC---AWVMTCAFSPTGQSVACGG--- 128 (379)
Q Consensus 57 ~~~~~~l~gH~~~v~~~~~~~--~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~---~~v~~~~~s~~g~~l~~~~--- 128 (379)
......|++|...++.+.|.. ....+.||+.||+|++||+........+.... ....+++....++.+++|.
T Consensus 60 g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~ 139 (376)
T KOG1188|consen 60 GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELT 139 (376)
T ss_pred hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccc
Confidence 344567889999999999987 35678999999999999998766655543322 3455666666788888875
Q ss_pred -CCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCcc
Q 016974 129 -LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA 207 (379)
Q Consensus 129 -~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~ 207 (379)
.|-.+.+||++...+. +..-...|.+-|+++.|+|.+++.|++||.||-|.++|+......-.+... --|..
T Consensus 140 ~s~A~v~lwDvR~~qq~-----l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~v--iN~~s 212 (376)
T KOG1188|consen 140 RSDASVVLWDVRSEQQL-----LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHV--INHGS 212 (376)
T ss_pred cCceEEEEEEeccccch-----hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHh--hcccc
Confidence 3677999999864321 222345799999999999999999999999999999998754211111111 13455
Q ss_pred CeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEec-----------ccCCeeEEEEcc-CCCEEEEeeC-CCeE
Q 016974 208 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG-----------HEGDVNTVKFFP-DGNRFGTGSD-DGTC 274 (379)
Q Consensus 208 ~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~-----------h~~~v~~v~~sp-~g~~l~s~s~-D~~i 274 (379)
.|-.+.|.....+.+.+-+...+..+|++.........-+. ....+-.. .+| ++..++.++. -++.
T Consensus 213 SI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~~~~~~~~l~g~~~n~~ 291 (376)
T KOG1188|consen 213 SIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE-HSPGDKDTCALAGTDSNKG 291 (376)
T ss_pred eeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec-ccCCCcceEEEeccccCce
Confidence 68888888765556666777788999998765432211110 00111111 123 4555555554 4444
Q ss_pred EEEEC---CCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeC
Q 016974 275 RLFDI---RTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326 (379)
Q Consensus 275 ~iwd~---~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~ 326 (379)
.++-+ .++.........++ .+...|.++.|...+.++.+|++||.+.+|..
T Consensus 292 ~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 292 TIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred eEEEeeecccccccCccccccC-CcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 44432 22222111111111 12335788899989999999999999999974
No 198
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.2e-16 Score=136.88 Aligned_cols=265 Identities=17% Similarity=0.192 Sum_probs=181.6
Q ss_pred eEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCe
Q 016974 103 HAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT 182 (379)
Q Consensus 103 ~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~ 182 (379)
+.+..|.+.|.++.|+.++++|++||.|..+++|++...-......|+--.-..|...|.|++|... +..+.+|..+++
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~-N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLE-NRFLYSGERWGT 128 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccC-CeeEecCCCcce
Confidence 4456788899999999999999999999999999987532211111222222346678999999875 468999999999
Q ss_pred EEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccce--EEEecccCCeeEEEEcc
Q 016974 183 CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV--RTFHGHEGDVNTVKFFP 260 (379)
Q Consensus 183 i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~--~~~~~h~~~v~~v~~sp 260 (379)
|.+.|+++.+.+.++.. ....+.|+.+..+|. .+.|++.+.++.|.+||.+...... ..+.......+.+-|+|
T Consensus 129 VI~HDiEt~qsi~V~~~---~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P 204 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANE---NNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHP 204 (609)
T ss_pred eEeeecccceeeeeecc---cCcccceeecccCCC-CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecC
Confidence 99999999877766532 122348999999986 5688999999999999998643222 22333456788999999
Q ss_pred C-CCEEEEeeCCCeEEEEECCCCceeEEEeecc---CCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEE-Eec
Q 016974 261 D-GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH---GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV-LNL 335 (379)
Q Consensus 261 ~-g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~---~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~-~~~ 335 (379)
. ..+|++.+..+-+.+||.+..... .+.... ...+.....++.|+|+|.-+.+--..-.-.+||....+.. ...
T Consensus 205 ~~P~Li~~~~~~~G~~~~D~R~~~~~-~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~ 283 (609)
T KOG4227|consen 205 ETPALILVNSETGGPNVFDRRMQARP-VYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKS 283 (609)
T ss_pred CCceeEEeccccCCCCceeeccccch-HHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEec
Confidence 5 567788899999999999864321 110000 0111223578899999988776544444567776554432 221
Q ss_pred ccccCC--ccCceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 336 GSLQNS--HEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 336 ~~~~~~--h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
...+.+ ....+.+++|..| ..+++||.|=.|++|.+-.
T Consensus 284 D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~ 323 (609)
T KOG4227|consen 284 DHNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPR 323 (609)
T ss_pred cCCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCC
Confidence 111111 0124566777655 4499999999999998743
No 199
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.75 E-value=4.2e-16 Score=130.24 Aligned_cols=210 Identities=17% Similarity=0.267 Sum_probs=165.5
Q ss_pred cccEEEEEeeCCCCeEEEEcCCCcEEEEECCCC---ceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCC
Q 016974 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTS---QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTD 143 (379)
Q Consensus 67 ~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~ 143 (379)
..+|+|.+|++|+..+|.+-....|.|+..... +..++++.|+..|+.++|+|..+.|++++.|....+|....
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~--- 86 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPS--- 86 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCC---
Confidence 458999999999999999999999999987654 36788899999999999999999999999999999998742
Q ss_pred CCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEE
Q 016974 144 KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFV 223 (379)
Q Consensus 144 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 223 (379)
.+.+.....+.-|+...+++.|+|.+ +.|++|+.-+.|.+|-++....- .....+...+...|.+++|+| ++-+++
T Consensus 87 -~~~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdW-WVsKhikkPirStv~sldWhp-nnVLla 162 (361)
T KOG1523|consen 87 -GGTWKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDW-WVSKHIKKPIRSTVTSLDWHP-NNVLLA 162 (361)
T ss_pred -CCeeccceeEEEeccceeeEeecCcC-ceEEeccCccEEEEEEEecccce-ehhhhhCCccccceeeeeccC-Ccceec
Confidence 23443444555678889999999975 57999999999999977653211 111122356678899999998 567899
Q ss_pred EecCCCcEEEEEccCC-----------------ccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCc
Q 016974 224 SGSCDSTARLWDTRVA-----------------SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH 283 (379)
Q Consensus 224 sg~~d~~i~vwd~~~~-----------------~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~ 283 (379)
.|+.|+.+|++..-.. .+.+.++....+.|+.+.|+|+|..|+-.+.|.++.+-|.....
T Consensus 163 aGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 163 AGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred ccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 9999999999964210 11223333456789999999999999999999999999976554
No 200
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=8.1e-15 Score=118.20 Aligned_cols=276 Identities=15% Similarity=0.183 Sum_probs=185.4
Q ss_pred cEEEEEeeCCCCeEEEEcCCCcEEEEECCC---------Cc-eeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEc
Q 016974 69 KVYSLDWTSERNRIVSASQDGRLIVWNALT---------SQ-KTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNL 138 (379)
Q Consensus 69 ~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~---------~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~ 138 (379)
.|.+-+|+|.+++|+.|+.+|+|.+..+.. ++ .+...+.|.++++.++|. ..+|++++. |.|+=|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeee
Confidence 366678999999999999999999998742 22 233447888999999998 445666554 99999987
Q ss_pred CCCCCCCCCccee-eeecccc-----cceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEE
Q 016974 139 NSPTDKDGNLPVS-RMLSGHK-----GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV 212 (379)
Q Consensus 139 ~~~~~~~~~~~~~-~~~~~h~-----~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~ 212 (379)
+.-.+..+..+.. ....-|. ..|.++-..|..+ .++.++.|+.+.-||+++|.....+ .+|++.+-++
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en-Si~~AgGD~~~y~~dlE~G~i~r~~-----rGHtDYvH~v 162 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN-SILFAGGDGVIYQVDLEDGRIQREY-----RGHTDYVHSV 162 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC-cEEEecCCeEEEEEEecCCEEEEEE-----cCCcceeeee
Confidence 6432211111111 1111222 3567777778754 4666679999999999999877776 7899999998
Q ss_pred EEeCCCCcEEEEecCCCcEEEEEccCCccceEEE---------eccc-CCeeEEEEccCCCEEEEeeCCCeEEEEECCCC
Q 016974 213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF---------HGHE-GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG 282 (379)
Q Consensus 213 ~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~---------~~h~-~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~ 282 (379)
..-..++ .++||+.||++|+||+++.+ .+..+ +.|. .+|-+++- +..++++|+. ..+.+|+++..
T Consensus 163 v~R~~~~-qilsG~EDGtvRvWd~kt~k-~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgG-p~lslwhLrss 237 (325)
T KOG0649|consen 163 VGRNANG-QILSGAEDGTVRVWDTKTQK-HVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGG-PKLSLWHLRSS 237 (325)
T ss_pred eecccCc-ceeecCCCccEEEEeccccc-eeEEeccccChhhcCcccCceeEEEec--cCceEEecCC-CceeEEeccCC
Confidence 7754444 56799999999999998763 33332 2222 24666664 5568877654 56899999998
Q ss_pred ceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCC-CCeEEEe
Q 016974 283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD-GSALCTG 361 (379)
Q Consensus 283 ~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d-~~~l~s~ 361 (379)
+....+.- ..++..+.|.. ..+++++....|.-|.+. +...... .......++..|+-. -++|-.+
T Consensus 238 e~t~vfpi------pa~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~i----p~~s~~c~s~s~~~~p~k~~s~a 304 (325)
T KOG0649|consen 238 ESTCVFPI------PARVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANI----PVESTACYSASWQTSPIKFISIA 304 (325)
T ss_pred CceEEEec------ccceeEeeeec--ceEEEeccccceeeeeec-cEEEEec----cCCccceeeecccCCceEEEEec
Confidence 88776632 23467788854 467778877889999753 3322222 112223455555432 4666677
Q ss_pred eCCCcEEEEe
Q 016974 362 SWDTNLKIWA 371 (379)
Q Consensus 362 s~D~~i~vw~ 371 (379)
+..+.+.|+.
T Consensus 305 g~s~~~~i~~ 314 (325)
T KOG0649|consen 305 GFSNKLHILK 314 (325)
T ss_pred ccceeeeeee
Confidence 7777887774
No 201
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.74 E-value=2.2e-16 Score=130.11 Aligned_cols=211 Identities=22% Similarity=0.367 Sum_probs=159.6
Q ss_pred eeEeeccc-cccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCce-eeEeec-----CCcceEEEEECC--CCCEEEEe
Q 016974 57 LVCCRTLQ-GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQK-THAIKL-----PCAWVMTCAFSP--TGQSVACG 127 (379)
Q Consensus 57 ~~~~~~l~-gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~-----~~~~v~~~~~s~--~g~~l~~~ 127 (379)
+.+...|. .|-+.|.|+.|.|++..+++-. |..|.+|++..+.. ...+.. +.....+-+|+| +|..+++.
T Consensus 112 lE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt 190 (370)
T KOG1007|consen 112 LECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT 190 (370)
T ss_pred hhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe
Confidence 34455555 5677899999999999998776 88999999987765 333322 123455667888 67777765
Q ss_pred eCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCe-eEEEecCccccCCc
Q 016974 128 GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-RTSVFGGEFQSGHT 206 (379)
Q Consensus 128 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~~h~ 206 (379)
.|+++..||+++... ...+-..|...|..+.|.|+...+|++++.||.|++||.+... .+.. ..+|.
T Consensus 191 -~d~tl~~~D~RT~~~------~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~e-----l~~Hs 258 (370)
T KOG1007|consen 191 -SDSTLQFWDLRTMKK------NNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQE-----LPGHS 258 (370)
T ss_pred -CCCcEEEEEccchhh------hcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccc-----cCCCc
Confidence 577899999985221 1223456878899999999888889999999999999987532 2222 36899
Q ss_pred cCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCc----------------------------cceEEEecccCCeeEEEE
Q 016974 207 ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS----------------------------RAVRTFHGHEGDVNTVKF 258 (379)
Q Consensus 207 ~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~----------------------------~~~~~~~~h~~~v~~v~~ 258 (379)
-.|.++.|+|...+++++|+.|..|.+|...... ..+.++..|+..|++++|
T Consensus 259 HWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aW 338 (370)
T KOG1007|consen 259 HWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAW 338 (370)
T ss_pred eEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEee
Confidence 9999999999999999999999999999643110 123466789999999999
Q ss_pred cc-CCCEEEEeeCCCeEEEEECC
Q 016974 259 FP-DGNRFGTGSDDGTCRLFDIR 280 (379)
Q Consensus 259 sp-~g~~l~s~s~D~~i~iwd~~ 280 (379)
|. |.=.||+-|.||.+.|=.+.
T Consensus 339 SsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 339 SSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccCCCeeEEEeccCceEEeecCC
Confidence 86 55567888999999887664
No 202
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=1e-16 Score=138.52 Aligned_cols=201 Identities=20% Similarity=0.276 Sum_probs=145.3
Q ss_pred EEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCcc
Q 016974 162 SCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR 241 (379)
Q Consensus 162 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~ 241 (379)
.+++|++++ ..|++|+.||++|+|+..+....... ..|...|.+++|+| +++++++-+.| ..+||+.+...
T Consensus 148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~t~l~e-----~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~- 218 (398)
T KOG0771|consen 148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSMLTILEE-----IAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGA- 218 (398)
T ss_pred eEEEEcCCC-CEeeeccccceEEEEecCcchhhhhh-----HhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCc-
Confidence 567888865 57999999999999997654433222 57889999999997 78899999999 89999998652
Q ss_pred ceEEEe--cccCCeeEEEEccCC---C--EEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEE
Q 016974 242 AVRTFH--GHEGDVNTVKFFPDG---N--RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA 314 (379)
Q Consensus 242 ~~~~~~--~h~~~v~~v~~sp~g---~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~s 314 (379)
.+.... ........+.|+.|+ . .++....-+.|+.||+...+.-.........+....|++++.|++|+++|.
T Consensus 219 ~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~Al 298 (398)
T KOG0771|consen 219 ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLAL 298 (398)
T ss_pred hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEE
Confidence 222221 222345667888776 3 333334556778777654332111000011112235899999999999999
Q ss_pred EEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 315 GYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 315 g~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
|+.||.|-|++....+...-. ...|...|+.+.|+||.+.+++.|.|.++.|..+..
T Consensus 299 GT~dGsVai~~~~~lq~~~~v---k~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 299 GTMDGSVAIYDAKSLQRLQYV---KEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eccCCcEEEEEeceeeeeEee---hhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999999998766554433 257999999999999999999999999999887655
No 203
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.73 E-value=7.9e-18 Score=156.25 Aligned_cols=242 Identities=23% Similarity=0.350 Sum_probs=173.0
Q ss_pred EeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeE
Q 016974 104 AIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183 (379)
Q Consensus 104 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i 183 (379)
.+.+|...|+|+.|...|.++++|+.|..++||...+. .+.....||.+.|+.++.+.. ...+++++.|..|
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~-------~~lAs~rGhs~ditdlavs~~-n~~iaaaS~D~vI 256 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA-------RCLASCRGHSGDITDLAVSSN-NTMIAAASNDKVI 256 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccch-------hhhccCCCCccccchhccchh-hhhhhhcccCceE
Confidence 34567778999999999999999999999999997642 245567899999999988765 4678999999999
Q ss_pred EEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCcc-----ceEEEecccCCeeEEEE
Q 016974 184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR-----AVRTFHGHEGDVNTVKF 258 (379)
Q Consensus 184 ~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~-----~~~~~~~h~~~v~~v~~ 258 (379)
++|.+.++..+.++ .+|++.|++++|+|. .+.+.||++++||.+-... +.. +. ....+.++.|
T Consensus 257 rvWrl~~~~pvsvL-----rghtgavtaiafsP~-----~sss~dgt~~~wd~r~~~~~y~prp~~-~~-~~~~~~s~~~ 324 (1113)
T KOG0644|consen 257 RVWRLPDGAPVSVL-----RGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLEPRIYVPRPLK-FT-EKDLVDSILF 324 (1113)
T ss_pred EEEecCCCchHHHH-----hccccceeeeccCcc-----ccCCCCCceEeccccccccccCCCCCC-cc-cccceeeeec
Confidence 99999999877766 789999999999983 4789999999999872100 000 00 0112233333
Q ss_pred ccCCCEEEEeeC-------------------------------------CCeEEEEECCCCceeEEEeeccCCCCCCCeE
Q 016974 259 FPDGNRFGTGSD-------------------------------------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVT 301 (379)
Q Consensus 259 sp~g~~l~s~s~-------------------------------------D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 301 (379)
..++.-++|++. +-.+++|++.+|...+.. ..+...+.
T Consensus 325 ~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l-----~ghsd~~y 399 (1113)
T KOG0644|consen 325 ENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNL-----MGHSDEVY 399 (1113)
T ss_pred cccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhh-----ccccccee
Confidence 333333333333 334555666555433222 11234577
Q ss_pred EEEEccCCCE-EEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 302 SIAFSISGRL-LFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 302 ~~~fs~~g~~-l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
.+.|+|-... ..+++.||...|||.-.+..+.... .+|.. +..-+||+||+.++....-|.++|...+.
T Consensus 400 vLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~---~gh~k-l~d~kFSqdgts~~lsd~hgql~i~g~gq 469 (1113)
T KOG0644|consen 400 VLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF---IGHGK-LVDGKFSQDGTSIALSDDHGQLYILGTGQ 469 (1113)
T ss_pred eeeecCCCcHhhhhccCCCceEeeecccCCcceeee---cccce-eeccccCCCCceEecCCCCCceEEeccCC
Confidence 8888886554 4567899999999987776655442 35654 45568999999999998899999998776
No 204
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.72 E-value=7.3e-17 Score=140.88 Aligned_cols=270 Identities=18% Similarity=0.252 Sum_probs=187.5
Q ss_pred EEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcc
Q 016974 70 VYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLP 149 (379)
Q Consensus 70 v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~ 149 (379)
-+.+.++.+|++|+-|+.-|.|-.+|+.+++....+..- ..|..+.|-.+.+++|.+ ....+.|||-...
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~-Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~Gt-------- 201 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM-ETVRDVTFLHNEQFFAVA-QKKYVYVYDNNGT-------- 201 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeeehh-hhhhhhhhhcchHHHHhh-hhceEEEecCCCc--------
Confidence 357889999999999999999999999988876665443 447778888888888776 4556788875421
Q ss_pred eeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCC
Q 016974 150 VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS 229 (379)
Q Consensus 150 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~ 229 (379)
..+.+.-| ..|..+.|.|. ..+|++++..|.++.-|+.+|..+..+. .-.+.+..+.-+|- +-.+-+|...|
T Consensus 202 ElHClk~~-~~v~rLeFLPy-HfLL~~~~~~G~L~Y~DVS~GklVa~~~-----t~~G~~~vm~qNP~-NaVih~GhsnG 273 (545)
T KOG1272|consen 202 ELHCLKRH-IRVARLEFLPY-HFLLVAASEAGFLKYQDVSTGKLVASIR-----TGAGRTDVMKQNPY-NAVIHLGHSNG 273 (545)
T ss_pred EEeehhhc-Cchhhhcccch-hheeeecccCCceEEEeechhhhhHHHH-----ccCCccchhhcCCc-cceEEEcCCCc
Confidence 23334333 45788899996 4678889999999999999987655441 22334455555653 44778899999
Q ss_pred cEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCC
Q 016974 230 TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG 309 (379)
Q Consensus 230 ~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g 309 (379)
+|.+|..... +++-.+..|.++|.++++.|+|+|+||.+.|+.++|||++.-.++..+..++ +...++||..|
T Consensus 274 tVSlWSP~sk-ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~------~a~~ls~Sqkg 346 (545)
T KOG1272|consen 274 TVSLWSPNSK-EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPH------PASNLSLSQKG 346 (545)
T ss_pred eEEecCCCCc-chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCC------Ccccccccccc
Confidence 9999987644 4555566899999999999999999999999999999999877766655433 35677888665
Q ss_pred CEEEEEEecCcEEEEeC-CCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCc
Q 016974 310 RLLFAGYSNGDCYVWDT-LLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTN 366 (379)
Q Consensus 310 ~~l~sg~~dg~i~iwd~-~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~ 366 (379)
+||.|. ...|.||.- ..+..-.....+.....++|..+.|-|-...|-.|-.-|.
T Consensus 347 -lLA~~~-G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~ 402 (545)
T KOG1272|consen 347 -LLALSY-GDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGI 402 (545)
T ss_pred -ceeeec-CCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCc
Confidence 444443 347999952 2211000000011123357888888775555554444443
No 205
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.72 E-value=1.4e-16 Score=143.94 Aligned_cols=237 Identities=16% Similarity=0.247 Sum_probs=167.8
Q ss_pred EcCCCcEEEEECCCCceeeE--ee--cCCcceEEEEECC-CCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeeccccc
Q 016974 85 ASQDGRLIVWNALTSQKTHA--IK--LPCAWVMTCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG 159 (379)
Q Consensus 85 ~s~D~~v~iwd~~~~~~~~~--~~--~~~~~v~~~~~s~-~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~ 159 (379)
.+.-|.|-|+++...-.+.. +. .....|+.+.|.| |.+.||.++.|+.|++|.+....-+.........+.+|..
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~e 678 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGE 678 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccc
Confidence 46678999999875433211 11 1234578889998 6689999999999999999865433333445567889999
Q ss_pred ceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCC
Q 016974 160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239 (379)
Q Consensus 160 ~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~ 239 (379)
.|+++.|+|-....|++++.|-+|++||+.++.....+ .+|++.|..++|+| +++.+++-+.||+|++|.-+..
T Consensus 679 KI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l-----~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs~ 752 (1012)
T KOG1445|consen 679 KITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRL-----VGHTDQIFGIAWSP-DGRRIATVCKDGTLRVYEPRSR 752 (1012)
T ss_pred eEEEEEecchhhhHhhhhhccceeeeeehhhhhhhhee-----ccCcCceeEEEECC-CCcceeeeecCceEEEeCCCCC
Confidence 99999999977778999999999999999987544434 68999999999997 7889999999999999998876
Q ss_pred ccceEEEeccc-CCeeEEEEccCCCEEEEeeCCC----eEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCC-EEE
Q 016974 240 SRAVRTFHGHE-GDVNTVKFFPDGNRFGTGSDDG----TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLF 313 (379)
Q Consensus 240 ~~~~~~~~~h~-~~v~~v~~sp~g~~l~s~s~D~----~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~-~l~ 313 (379)
.++++.-.+-. ..--.+.|--||+++++.+.|. .|.+||.++-.....+...-.. ...+.--.|++|.. +++
T Consensus 753 e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDv--aps~LvP~YD~Ds~~lfl 830 (1012)
T KOG1445|consen 753 EQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDV--APSPLVPHYDYDSNVLFL 830 (1012)
T ss_pred CCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecc--cCccccccccCCCceEEE
Confidence 66665433221 2334677888999988877664 5777876653211111110000 00111123556655 567
Q ss_pred EEEecCcEEEEeCCCc
Q 016974 314 AGYSNGDCYVWDTLLA 329 (379)
Q Consensus 314 sg~~dg~i~iwd~~~~ 329 (379)
+|-.|..|++|.+...
T Consensus 831 tGKGD~~v~~yEv~~e 846 (1012)
T KOG1445|consen 831 TGKGDRFVNMYEVIYE 846 (1012)
T ss_pred ecCCCceEEEEEecCC
Confidence 7888999999986543
No 206
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.71 E-value=1.9e-14 Score=122.60 Aligned_cols=234 Identities=13% Similarity=0.136 Sum_probs=160.9
Q ss_pred eEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCC--CeEEEeecC
Q 016974 112 VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD--QTCVLWDIT 189 (379)
Q Consensus 112 v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d--~~i~~wd~~ 189 (379)
+....|..+...|..|+.||. ++++.++... .-.... ..-.|-..-|+. .+++..+.+ +.+++.+++
T Consensus 8 i~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k------~~~~~~-~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~K 76 (391)
T KOG2110|consen 8 INFIGFNQDSTLLSVGSKDGY-KIFSCSPFEK------CFSKDT-EGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFK 76 (391)
T ss_pred eeeeeeccceeEEEccCCCce-eEEecCchHH------hhcccC-CCeEEEEeeccc---ceeEEEecCCCceEEEEEcc
Confidence 445568888889999999985 7887664211 000000 011222333443 233333333 458888887
Q ss_pred CCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEe---cccCCeeEEEEccCCCEEE
Q 016974 190 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH---GHEGDVNTVKFFPDGNRFG 266 (379)
Q Consensus 190 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~---~h~~~v~~v~~sp~g~~l~ 266 (379)
.+..+..+ .....|.++.++. +.|+.+-.+ .|.|||++.. +.+.++. .+...+.++++++.+.|+|
T Consensus 77 k~~~ICe~------~fpt~IL~VrmNr---~RLvV~Lee-~IyIydI~~M-klLhTI~t~~~n~~gl~AlS~n~~n~ylA 145 (391)
T KOG2110|consen 77 KKTTICEI------FFPTSILAVRMNR---KRLVVCLEE-SIYIYDIKDM-KLLHTIETTPPNPKGLCALSPNNANCYLA 145 (391)
T ss_pred cCceEEEE------ecCCceEEEEEcc---ceEEEEEcc-cEEEEecccc-eeehhhhccCCCccceEeeccCCCCceEE
Confidence 66544433 1234688888763 345555554 4999999866 4454443 3455577777777777888
Q ss_pred Eee--CCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCc-EEEEeCCCceEEEecccccCCcc
Q 016974 267 TGS--DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGD-CYVWDTLLAKVVLNLGSLQNSHE 343 (379)
Q Consensus 267 s~s--~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~-i~iwd~~~~~~~~~~~~~~~~h~ 343 (379)
--+ .-|.|.|||+.+.+.+..+.. |.+.+.+++|+++|.+||++++.|+ |+||.+..+....++.. ..-.
T Consensus 146 yp~s~t~GdV~l~d~~nl~~v~~I~a-----H~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRR--G~~~ 218 (391)
T KOG2110|consen 146 YPGSTTSGDVVLFDTINLQPVNTINA-----HKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRR--GTYP 218 (391)
T ss_pred ecCCCCCceEEEEEcccceeeeEEEe-----cCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeC--Ccee
Confidence 654 467899999998887766643 3457999999999999999999997 78999998888777632 1224
Q ss_pred CceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 344 GRITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 344 ~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
..|++++|+||+++|++.|..+||.||.++.
T Consensus 219 ~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 219 VSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred eEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 5789999999999999999999999999876
No 207
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.71 E-value=6.5e-16 Score=137.27 Aligned_cols=198 Identities=23% Similarity=0.357 Sum_probs=135.9
Q ss_pred CCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeec----ccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCee
Q 016974 118 SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS----GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 193 (379)
Q Consensus 118 s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~----~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 193 (379)
.|.+--+..|-.-|.+.+.|.... +..+.+. -.+..|+|+.|.|.++..++.+-.+|.+.+||..-..
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~-------~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~- 253 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINF-------EVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC- 253 (636)
T ss_pred CCCCcceEEeeccCceEEecchhh-------HHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccc-
Confidence 356667777777788887775431 1111110 1236799999999888889999999999999863210
Q ss_pred EEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCe
Q 016974 194 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 273 (379)
Q Consensus 194 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~ 273 (379)
+.+.. +.... ..+..|. |..|.-.....++..+.--.+.|+..+|+|||++||+.|.||.
T Consensus 254 ----------~~t~p--~~~~~-k~~~~f~-------i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGf 313 (636)
T KOG2394|consen 254 ----------GATAP--SYQAL-KDGDQFA-------ILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGF 313 (636)
T ss_pred ----------cCCCC--ccccc-CCCCeeE-------EeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCce
Confidence 00000 01111 1222332 3333322222344444444568999999999999999999999
Q ss_pred EEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEEC
Q 016974 274 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 352 (379)
Q Consensus 274 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s 352 (379)
+||||..+.+.+..+..- -+...|++|||||+||++|++|--|.||.....+.+..- .+|...|..++|.
T Consensus 314 LRvF~fdt~eLlg~mkSY-----FGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARG----qGHkSWVs~VaFD 383 (636)
T KOG2394|consen 314 LRIFDFDTQELLGVMKSY-----FGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARG----QGHKSWVSVVAFD 383 (636)
T ss_pred EEEeeccHHHHHHHHHhh-----ccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEec----cccccceeeEeec
Confidence 999998776554333221 234899999999999999999999999998888877654 6899999999998
No 208
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=5.3e-16 Score=138.19 Aligned_cols=170 Identities=19% Similarity=0.279 Sum_probs=130.0
Q ss_pred eEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecC-CCceEEEeeCCC
Q 016974 103 HAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD-EDTHLITSSGDQ 181 (379)
Q Consensus 103 ~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~d~ 181 (379)
+.+.+|.+-|.++.|+.+|.+|++||.|-.+.|||.-.. .+...+-.||...|+++.|.|. ++..+++|+.|.
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~------KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk 117 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEY------KLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDK 117 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhc------ceeeeeecccccceeEEeeeccCCCeEEEeccCcc
Confidence 557789999999999999999999999999999997531 1233445799999999999995 346789999999
Q ss_pred eEEEeecCCC--------eeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEE-------
Q 016974 182 TCVLWDITTG--------LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF------- 246 (379)
Q Consensus 182 ~i~~wd~~~~--------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~------- 246 (379)
.|+++|+... ..... ..-..|...|..++..|.+.+.|-+++.||+|+-+|++.+..+-...
T Consensus 118 ~i~lfdl~~~~~~~~d~~~~~~~---~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ 194 (758)
T KOG1310|consen 118 LIKLFDLDSSKEGGMDHGMEETT---RCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILV 194 (758)
T ss_pred eEEEEecccccccccccCccchh---hhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHH
Confidence 9999999741 11111 11246888888999888888999999999999999998642211111
Q ss_pred --ecccCCeeEEEEcc-CCCEEEEeeCCCeEEEEECCC
Q 016974 247 --HGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRT 281 (379)
Q Consensus 247 --~~h~~~v~~v~~sp-~g~~l~s~s~D~~i~iwd~~~ 281 (379)
.+.--...++.++| +..+|+.|+.|--.++||.+.
T Consensus 195 ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr 232 (758)
T KOG1310|consen 195 NYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRR 232 (758)
T ss_pred HhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhh
Confidence 11112356889999 567899999999999999653
No 209
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=4.3e-14 Score=131.82 Aligned_cols=237 Identities=13% Similarity=0.096 Sum_probs=149.3
Q ss_pred cEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeC---CCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEE
Q 016974 90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL---DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY 166 (379)
Q Consensus 90 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 166 (379)
.|.+||... .....+..+...+...+|+|||+.|+..+. +..+.+|++.... ......+.+ .+....|
T Consensus 180 ~l~~~d~dg-~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~-----~~~l~~~~~---~~~~~~~ 250 (429)
T PRK03629 180 ELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA-----VRQVASFPR---HNGAPAF 250 (429)
T ss_pred eEEEEcCCC-CCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC-----eEEccCCCC---CcCCeEE
Confidence 688888753 334445555667889999999999987643 4568888886432 111112223 3445789
Q ss_pred ecCCCceEEEeeCCC--eEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceE
Q 016974 167 VPDEDTHLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR 244 (379)
Q Consensus 167 ~~~~~~~l~s~~~d~--~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~ 244 (379)
+|++...+++.+.++ .|.+||+.++...... .+...+....|+|.+..++++...++...+|.+........
T Consensus 251 SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt------~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~ 324 (429)
T PRK03629 251 SPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT------DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ 324 (429)
T ss_pred CCCCCEEEEEEcCCCCcEEEEEECCCCCEEEcc------CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE
Confidence 998765544545555 5888999877543332 22334567788874444444444455666664432222233
Q ss_pred EEecccCCeeEEEEccCCCEEEEeeCC---CeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCc-
Q 016974 245 TFHGHEGDVNTVKFFPDGNRFGTGSDD---GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGD- 320 (379)
Q Consensus 245 ~~~~h~~~v~~v~~sp~g~~l~s~s~D---~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~- 320 (379)
.+..+........|+|||++|+..+.+ ..|.+||+.++.... +... . ......|+|||++|+.++.++.
T Consensus 325 ~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~-~-----~~~~p~~SpDG~~i~~~s~~~~~ 397 (429)
T PRK03629 325 RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDT-F-----LDETPSIAPNGTMVIYSSSQGMG 397 (429)
T ss_pred EeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCC-C-----CCCCceECCCCCEEEEEEcCCCc
Confidence 343344456678999999999877643 358889998876432 2211 1 1235689999999999887764
Q ss_pred --EEEEeCCCceEEEecccccCCccCceeEEEECC
Q 016974 321 --CYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 353 (379)
Q Consensus 321 --i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 353 (379)
++++++. ++....+ ..|.+.+...+|+|
T Consensus 398 ~~l~~~~~~-G~~~~~l----~~~~~~~~~p~Wsp 427 (429)
T PRK03629 398 SVLNLVSTD-GRFKARL----PATDGQVKFPAWSP 427 (429)
T ss_pred eEEEEEECC-CCCeEEC----ccCCCCcCCcccCC
Confidence 6777764 4434444 45777888889987
No 210
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.68 E-value=1.1e-14 Score=120.29 Aligned_cols=132 Identities=28% Similarity=0.455 Sum_probs=97.6
Q ss_pred cEEEEEccCCccceEEEec-ccCCeeEEEEccCCCEEEEe--eCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEc
Q 016974 230 TARLWDTRVASRAVRTFHG-HEGDVNTVKFFPDGNRFGTG--SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS 306 (379)
Q Consensus 230 ~i~vwd~~~~~~~~~~~~~-h~~~v~~v~~sp~g~~l~s~--s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs 306 (379)
...+|.++........+.- ..++|.+++|+|+|+.|+.. ..++.|.+||++ ++.+..+. ...++.+.||
T Consensus 38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-------~~~~n~i~ws 109 (194)
T PF08662_consen 38 EFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-------TQPRNTISWS 109 (194)
T ss_pred eEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec-------CCCceEEEEC
Confidence 4556655433334444432 34579999999999987654 467899999996 55554442 1246789999
Q ss_pred cCCCEEEEEEe---cCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeC------CCcEEEEecCce
Q 016974 307 ISGRLLFAGYS---NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW------DTNLKIWAFGGY 375 (379)
Q Consensus 307 ~~g~~l~sg~~---dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~------D~~i~vw~~~~~ 375 (379)
|+|++|+.|+. .|.|.+||....+.+.+. .|. .++.++|+|||++|++++. |+.++||++.+.
T Consensus 110 P~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~-----~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 110 PDGRFLVLAGFGNLNGDLEFWDVRKKKKISTF-----EHS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred CCCCEEEEEEccCCCcEEEEEECCCCEEeecc-----ccC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 99999999864 467999999877776654 233 4789999999999999774 899999999883
No 211
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.68 E-value=1.3e-12 Score=118.51 Aligned_cols=286 Identities=17% Similarity=0.146 Sum_probs=175.2
Q ss_pred CeE-EEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccc
Q 016974 80 NRI-VSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK 158 (379)
Q Consensus 80 ~~l-~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~ 158 (379)
+++ ++-..++.|.+.|..+.+.+..+......-..+.|+|||+++.+++.|+.+.++|+.+.. ....+..-
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~-------~v~~i~~G- 77 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK-------VVATIKVG- 77 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS-------EEEEEE-S-
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc-------EEEEEecC-
Confidence 344 456778999999999999999888765444557899999999999999999999997532 33333322
Q ss_pred cceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCcccc--CCccCeEEEEEeCCCCcEEEEecCCCcEEEEEc
Q 016974 159 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS--GHTADVLSVSISGSNSRMFVSGSCDSTARLWDT 236 (379)
Q Consensus 159 ~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~ 236 (379)
.....+++++++...+++...++.+.++|.++.+....+...... .....+..+..++....++++--.-+.|.+-|.
T Consensus 78 ~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy 157 (369)
T PF02239_consen 78 GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDY 157 (369)
T ss_dssp SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEET
T ss_pred CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEe
Confidence 234678899987655556678999999999987766655322111 133456677667655445555555577877787
Q ss_pred cCCccceEEEecccCCeeEEEEccCCCEEEEe-eCCCeEEEEECCCCceeEEEeec------------cCCC--------
Q 016974 237 RVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGHQLQVYYQQ------------HGEN-------- 295 (379)
Q Consensus 237 ~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~-s~D~~i~iwd~~~~~~~~~~~~~------------~~~~-------- 295 (379)
............-........|+|+++|++.+ ..++.|-++|.++++.+...... |...
T Consensus 158 ~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~ 237 (369)
T PF02239_consen 158 SDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSG 237 (369)
T ss_dssp TTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEB
T ss_pred ccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeecc
Confidence 65533332233334567789999999987665 45678999998887655432110 0000
Q ss_pred ------------C-----------------CCCeEEEEEccCCCEEEEE----EecCcEEEEeCCCceEEEecccccCCc
Q 016974 296 ------------E-----------------IPHVTSIAFSISGRLLFAG----YSNGDCYVWDTLLAKVVLNLGSLQNSH 342 (379)
Q Consensus 296 ------------~-----------------~~~v~~~~fs~~g~~l~sg----~~dg~i~iwd~~~~~~~~~~~~~~~~h 342 (379)
. .+.-.-+.-+|+++++.+. ...++|.++|..+.+...++.. +-
T Consensus 238 ~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~---~~ 314 (369)
T PF02239_consen 238 LGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITP---GP 314 (369)
T ss_dssp SSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHH---HH
T ss_pred ccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEec---cC
Confidence 0 0011346679999999987 4557999999998877766631 11
Q ss_pred cCceeEEEECCCCCeEEEeeCCCc--EEEEecCcee
Q 016974 343 EGRITCLGLSADGSALCTGSWDTN--LKIWAFGGYR 376 (379)
Q Consensus 343 ~~~v~~~~~s~d~~~l~s~s~D~~--i~vw~~~~~~ 376 (379)
...+..+.|++||+.+..+.+|+. |.|||-..+.
T Consensus 315 ~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~ 350 (369)
T PF02239_consen 315 GKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLK 350 (369)
T ss_dssp T--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTE
T ss_pred CCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcE
Confidence 224889999999998887777655 9999976643
No 212
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=1.1e-14 Score=136.06 Aligned_cols=212 Identities=14% Similarity=0.128 Sum_probs=140.0
Q ss_pred CCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCC---CeEEEeecCCCeeEEEecCccccCCc
Q 016974 130 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD---QTCVLWDITTGLRTSVFGGEFQSGHT 206 (379)
Q Consensus 130 d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~~h~ 206 (379)
+..+.+||.+... .+.+..|...+....|+|++. .|+..+.+ ..|.+||+.++....... ..+|
T Consensus 183 ~~~i~i~d~dg~~--------~~~lt~~~~~v~~p~wSPDG~-~la~~s~~~~~~~i~i~dl~tg~~~~l~~---~~g~- 249 (429)
T PRK01742 183 PYEVRVADYDGFN--------QFIVNRSSQPLMSPAWSPDGS-KLAYVSFENKKSQLVVHDLRSGARKVVAS---FRGH- 249 (429)
T ss_pred eEEEEEECCCCCC--------ceEeccCCCccccceEcCCCC-EEEEEEecCCCcEEEEEeCCCCceEEEec---CCCc-
Confidence 4678888876421 134566778899999999875 56655543 479999998875433221 1223
Q ss_pred cCeEEEEEeCCCCcEEE-EecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEee-CCCeEEEEECCCCc-
Q 016974 207 ADVLSVSISGSNSRMFV-SGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGH- 283 (379)
Q Consensus 207 ~~v~~~~~~~~~~~~l~-sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s-~D~~i~iwd~~~~~- 283 (379)
.....|+| +++.++ +.+.+|.+.||.+.........+..+...+....|+|||+.|+..+ .++...||++....
T Consensus 250 --~~~~~wSP-DG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~ 326 (429)
T PRK01742 250 --NGAPAFSP-DGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG 326 (429)
T ss_pred --cCceeECC-CCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 23577887 455554 4557887777754322233455666777788999999999887665 57888888764322
Q ss_pred eeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeC
Q 016974 284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 363 (379)
Q Consensus 284 ~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~ 363 (379)
..... . + . . ....|+|+|++|+..+.++ +.+||+.+++...... .+ ....+.|+|||++|+.++.
T Consensus 327 ~~~~l-~-~-~---~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~----~~--~~~~~~~sPdG~~i~~~s~ 391 (429)
T PRK01742 327 GASLV-G-G-R---G--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS----TF--LDESPSISPNGIMIIYSST 391 (429)
T ss_pred CeEEe-c-C-C---C--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC----CC--CCCCceECCCCCEEEEEEc
Confidence 12221 1 1 1 1 3467999999998887654 6679987776443221 11 2245789999999999999
Q ss_pred CCcEEEEec
Q 016974 364 DTNLKIWAF 372 (379)
Q Consensus 364 D~~i~vw~~ 372 (379)
++.+++|.+
T Consensus 392 ~g~~~~l~~ 400 (429)
T PRK01742 392 QGLGKVLQL 400 (429)
T ss_pred CCCceEEEE
Confidence 999888875
No 213
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=3.5e-14 Score=132.93 Aligned_cols=236 Identities=16% Similarity=0.168 Sum_probs=148.0
Q ss_pred CcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCC---CcEEEEEcCCCCCCCCCcceeeeecccccceEEEE
Q 016974 89 GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD---SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQ 165 (379)
Q Consensus 89 ~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 165 (379)
.+|.+||.. +.....+..+...+.+.+|+|+|+.|+..+.+ ..+.+|++.... . ..+..+.+...+..
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~-----~---~~l~~~~g~~~~~~ 254 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ-----R---ELVASFRGINGAPS 254 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCC-----E---EEeccCCCCccCce
Confidence 468899974 55555666666778899999999999988743 468899986432 1 12223334455679
Q ss_pred EecCCCceEEEeeCCC--eEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCc--EEEEEccCCcc
Q 016974 166 YVPDEDTHLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST--ARLWDTRVASR 241 (379)
Q Consensus 166 ~~~~~~~~l~s~~~d~--~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~--i~vwd~~~~~~ 241 (379)
|+|++...+++.+.++ .|.+||+.++..... ..+........|++.+..++++...++. |.++|+... .
T Consensus 255 ~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~l------t~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g-~ 327 (433)
T PRK04922 255 FSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRL------TNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG-S 327 (433)
T ss_pred ECCCCCEEEEEEeCCCCceEEEEECCCCCeEEC------ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC-C
Confidence 9998766556666665 588999988754332 2233334567888744434444445555 445555433 2
Q ss_pred ceEEEecccCCeeEEEEccCCCEEEEeeCCC---eEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEec
Q 016974 242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG---TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN 318 (379)
Q Consensus 242 ~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~---~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~d 318 (379)
...+..+.......+|+|||++|+..+.++ .|.+||+.+++... +.. +. ......|+|||++|+..+.+
T Consensus 328 -~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~-Lt~--~~----~~~~p~~spdG~~i~~~s~~ 399 (433)
T PRK04922 328 -AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRT-LTP--GS----LDESPSFAPNGSMVLYATRE 399 (433)
T ss_pred -eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEE-CCC--CC----CCCCceECCCCCEEEEEEec
Confidence 222222333455789999999998765433 69999998776542 211 11 12356899999988877653
Q ss_pred ---CcEEEEeCCCceEEEecccccCCccCceeEEEECC
Q 016974 319 ---GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 353 (379)
Q Consensus 319 ---g~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 353 (379)
+.|++++... .....+ ..+.+.+...+|+|
T Consensus 400 ~g~~~L~~~~~~g-~~~~~l----~~~~g~~~~p~wsp 432 (433)
T PRK04922 400 GGRGVLAAVSTDG-RVRQRL----VSADGEVREPAWSP 432 (433)
T ss_pred CCceEEEEEECCC-CceEEc----ccCCCCCCCCccCC
Confidence 3688888743 333333 22445667777876
No 214
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.64 E-value=5e-14 Score=117.94 Aligned_cols=246 Identities=15% Similarity=0.197 Sum_probs=173.2
Q ss_pred EeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeE
Q 016974 104 AIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183 (379)
Q Consensus 104 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i 183 (379)
.+.....++++.+|++|+..+|.+-....+.||...... -....+++..|...|+.+.|.|.. +.|++++.|+.-
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~----~w~~~htls~Hd~~vtgvdWap~s-nrIvtcs~drna 79 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD----LWEPAHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNA 79 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCC----CceeceehhhhCcceeEEeecCCC-CceeEccCCCCc
Confidence 344445779999999999999999999999999876532 134567889999999999999975 469999999999
Q ss_pred EEeecCCC-eeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCcc---ceEEEecccCCeeEEEEc
Q 016974 184 VLWDITTG-LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR---AVRTFHGHEGDVNTVKFF 259 (379)
Q Consensus 184 ~~wd~~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~---~~~~~~~h~~~v~~v~~s 259 (379)
.+|....+ .-...+. ..-+...++++.|+| +.+.|++|+.-+.|-||-+..... ....-..+...|++++|+
T Consensus 80 yVw~~~~~~~Wkptlv---LlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWh 155 (361)
T KOG1523|consen 80 YVWTQPSGGTWKPTLV---LLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWH 155 (361)
T ss_pred cccccCCCCeecccee---EEEeccceeeEeecC-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeecc
Confidence 99998443 2111110 134667789999997 667899999999999997753321 111224567789999999
Q ss_pred cCCCEEEEeeCCCeEEEEECCCC----ce----------eEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEe
Q 016974 260 PDGNRFGTGSDDGTCRLFDIRTG----HQ----------LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD 325 (379)
Q Consensus 260 p~g~~l~s~s~D~~i~iwd~~~~----~~----------~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd 325 (379)
|++-.|++||.|+..++|..--. ++ ...+..+. ....+.+..+.|+|+|..|+-.+.|+.+.+=|
T Consensus 156 pnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~-~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~d 234 (361)
T KOG1523|consen 156 PNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEA-SSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVD 234 (361)
T ss_pred CCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhh-ccCCCceeeeEeCCCCCEeeEecCCCceEEee
Confidence 99999999999999999974210 00 00000000 12346799999999999999999999999998
Q ss_pred CCCceE-EEecccccCCccCceeEEEECCCCCeEEEeeCC
Q 016974 326 TLLAKV-VLNLGSLQNSHEGRITCLGLSADGSALCTGSWD 364 (379)
Q Consensus 326 ~~~~~~-~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D 364 (379)
...... +..+. ..+ -|..++.|-.+.. ++.++.|
T Consensus 235 a~~p~~~v~~~~---~~~-lP~ls~~~ise~~-vv~ag~~ 269 (361)
T KOG1523|consen 235 AAGPSERVQSVA---TAQ-LPLLSVSWISENS-VVAAGYD 269 (361)
T ss_pred cCCCchhccchh---hcc-CCceeeEeecCCc-eeecCCC
Confidence 765542 22221 112 4556666654433 3334444
No 215
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=1.4e-13 Score=128.53 Aligned_cols=238 Identities=15% Similarity=0.188 Sum_probs=146.2
Q ss_pred CcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCC---CcEEEEEcCCCCCCCCCcceeeeecccccceEEEE
Q 016974 89 GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD---SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQ 165 (379)
Q Consensus 89 ~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 165 (379)
..+.+||. ++.....+..+...+.+.+|+|+|+.|+..+.+ ..+.+||+.... . ..+....+.+.+..
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~-----~---~~l~~~~g~~~~~~ 246 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR-----R---RVVANFKGSNSAPA 246 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC-----E---EEeecCCCCccceE
Confidence 35666775 455555555666778899999999999887753 458999986532 1 11222334456789
Q ss_pred EecCCCceEEEeeCCCeEEEeec--CCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccce
Q 016974 166 YVPDEDTHLITSSGDQTCVLWDI--TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 243 (379)
Q Consensus 166 ~~~~~~~~l~s~~~d~~i~~wd~--~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~ 243 (379)
|+|++...+++.+.++...+|.+ .++.. ..+ ..+........|+|.+..+++++..++...+|.+.......
T Consensus 247 ~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~l-----t~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~ 320 (427)
T PRK02889 247 WSPDGRTLAVALSRDGNSQIYTVNADGSGL-RRL-----TQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA 320 (427)
T ss_pred ECCCCCEEEEEEccCCCceEEEEECCCCCc-EEC-----CCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce
Confidence 99997665567788888777754 33332 222 12333345667887444444454456777788664322222
Q ss_pred EEEecccCCeeEEEEccCCCEEEEeeCCC---eEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecC-
Q 016974 244 RTFHGHEGDVNTVKFFPDGNRFGTGSDDG---TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG- 319 (379)
Q Consensus 244 ~~~~~h~~~v~~v~~sp~g~~l~s~s~D~---~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg- 319 (379)
..+..+.......+|+|||++|+..+.++ .|.+||+.+++..... . . .......|+|||++|+..+.++
T Consensus 321 ~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt-~-~-----~~~~~p~~spdg~~l~~~~~~~g 393 (427)
T PRK02889 321 QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT-D-T-----TRDESPSFAPNGRYILYATQQGG 393 (427)
T ss_pred EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc-C-C-----CCccCceECCCCCEEEEEEecCC
Confidence 22222223345678999999998877654 6999999887643322 1 1 1134678999999988877554
Q ss_pred --cEEEEeCCCceEEEecccccCCccCceeEEEECC
Q 016974 320 --DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 353 (379)
Q Consensus 320 --~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 353 (379)
.+++-+.. ++....+ ..+.+.+...+|+|
T Consensus 394 ~~~l~~~~~~-g~~~~~l----~~~~g~~~~p~wsp 424 (427)
T PRK02889 394 RSVLAAVSSD-GRIKQRL----SVQGGDVREPSWGP 424 (427)
T ss_pred CEEEEEEECC-CCceEEe----ecCCCCCCCCccCC
Confidence 35555553 3333333 23455667778887
No 216
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.64 E-value=1.8e-14 Score=117.56 Aligned_cols=254 Identities=19% Similarity=0.228 Sum_probs=157.2
Q ss_pred ccc-cccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEEC--CCCC----EEEEeeCCCc-E
Q 016974 62 TLQ-GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS--PTGQ----SVACGGLDSV-C 133 (379)
Q Consensus 62 ~l~-gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s--~~g~----~l~~~~~d~~-i 133 (379)
.+. .|...|+.+.-.|+ ..|.+-+.|+++.+|++.-+..+..-......+.-|.|+ +.++ .++.-+.... .
T Consensus 50 ~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~ 128 (323)
T KOG0322|consen 50 LIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDET 128 (323)
T ss_pred hhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchh
Confidence 344 46778889988776 578899999999999987544322211111111222221 2221 1221111100 1
Q ss_pred EEEEcCCCCCCCCCcce-eeeecccccceEEEEEecCCC--ceEEEeeCCCeEEEeecCCCeeEEEecCc-----cccCC
Q 016974 134 SIFNLNSPTDKDGNLPV-SRMLSGHKGYVSCCQYVPDED--THLITSSGDQTCVLWDITTGLRTSVFGGE-----FQSGH 205 (379)
Q Consensus 134 ~iw~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~--~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-----~~~~h 205 (379)
.+-|...+. +..+ .....+..+.++|..+-.+.. -+++.|-.+|.|.+||+.++..+..+... -...|
T Consensus 129 h~~D~g~~t----qv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash 204 (323)
T KOG0322|consen 129 HKQDGGDTT----QVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASH 204 (323)
T ss_pred hhhccCccc----eeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhc
Confidence 111111000 0000 001123445666666432222 24678889999999999987443333211 12468
Q ss_pred ccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCcc--ceE-EEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCC
Q 016974 206 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR--AVR-TFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG 282 (379)
Q Consensus 206 ~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~--~~~-~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~ 282 (379)
..+|.++.+.+... .=++|+.+..+.+|.+..... .++ ...-.+-.|..+.+-||++.+|+++.|+.||||+.++.
T Consensus 205 ~qpvlsldyas~~~-rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl 283 (323)
T KOG0322|consen 205 KQPVLSLDYASSCD-RGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL 283 (323)
T ss_pred cCcceeeeechhhc-CCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC
Confidence 88999999875432 235778888899998764311 111 11112234888999999999999999999999999999
Q ss_pred ceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeC
Q 016974 283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326 (379)
Q Consensus 283 ~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~ 326 (379)
.++..+.. |...|++++|+|+...+|+++.|+.|.+|++
T Consensus 284 ~pLAVLky-----Hsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 284 NPLAVLKY-----HSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred Cchhhhhh-----hhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 98877644 2346999999999999999999999999985
No 217
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=5.6e-13 Score=113.49 Aligned_cols=290 Identities=17% Similarity=0.240 Sum_probs=178.4
Q ss_pred cEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeec-CCcceEEEEECCCCC-EEEEeeCCCcEEEEEcCCCCCCCC
Q 016974 69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKL-PCAWVMTCAFSPTGQ-SVACGGLDSVCSIFNLNSPTDKDG 146 (379)
Q Consensus 69 ~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~ 146 (379)
.+..++|++--..+|++..|-.|+++|... .+...++. ....|.+++|-|.+. .|+.|.. +-|.||..+.......
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r 177 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANR 177 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccccccc
Confidence 366789998666688999999999999765 44444443 235689999999875 4555554 4588999876432211
Q ss_pred C-----cce--eeeecccccceEEEEEecCCCceEEEee-CCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCC
Q 016974 147 N-----LPV--SRMLSGHKGYVSCCQYVPDEDTHLITSS-GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN 218 (379)
Q Consensus 147 ~-----~~~--~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 218 (379)
. .-. ...-.|| ..|++++|.+++. .+++++ .|..|.|||..++.+.... .-.-+.+.-+.|+| +
T Consensus 178 ~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt-~l~tAS~gsssi~iWdpdtg~~~pL~-----~~glgg~slLkwSP-d 249 (445)
T KOG2139|consen 178 NIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT-ILVTASFGSSSIMIWDPDTGQKIPLI-----PKGLGGFSLLKWSP-D 249 (445)
T ss_pred ccccccccchhheeCCCC-ceeeEEEEcCCCC-EEeecccCcceEEEEcCCCCCccccc-----ccCCCceeeEEEcC-C
Confidence 1 001 1122355 6899999999864 566665 5778999999998765543 12234577788997 6
Q ss_pred CcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEe---------
Q 016974 219 SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY--------- 289 (379)
Q Consensus 219 ~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~--------- 289 (379)
+.+|+.++.|+..++|.....-...+-.- -.+.|....|+|+|..|+-.+.. .-++|.+.-..+-..+.
T Consensus 250 gd~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~sg-sp~lysl~f~~~~~~~~~~~~~k~~l 327 (445)
T KOG2139|consen 250 GDVLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACSG-SPRLYSLTFDGEDSVFLRPQSIKRVL 327 (445)
T ss_pred CCEEEEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEcC-CceEEEEeecCCCccccCcccceeee
Confidence 67788899999999996543322222222 34589999999999987655432 23444432111000000
Q ss_pred ---e-------ccCCCCCCCeEEEEEccCCCEEEEEEecC--------cEEEEeCCCceEEEe--cccccCCccCceeEE
Q 016974 290 ---Q-------QHGENEIPHVTSIAFSISGRLLFAGYSNG--------DCYVWDTLLAKVVLN--LGSLQNSHEGRITCL 349 (379)
Q Consensus 290 ---~-------~~~~~~~~~v~~~~fs~~g~~l~sg~~dg--------~i~iwd~~~~~~~~~--~~~~~~~h~~~v~~~ 349 (379)
. ....--.++..+++|+|.|.+||+-...+ .|.+||....-.+.- .+.....|. .-+
T Consensus 328 liaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P---~~I 404 (445)
T KOG2139|consen 328 LIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYP---AYI 404 (445)
T ss_pred eeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCC---ceE
Confidence 0 00011134678999999999999976443 466788654332221 122222232 234
Q ss_pred EECC---CCCeEEEeeCCCcEEEEecC
Q 016974 350 GLSA---DGSALCTGSWDTNLKIWAFG 373 (379)
Q Consensus 350 ~~s~---d~~~l~s~s~D~~i~vw~~~ 373 (379)
+|+| ++.+|..+=.-|.|.-|++.
T Consensus 405 sF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 405 SFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred EeeecccCCcEEEEEeccCceEeeeeE
Confidence 5554 56666665556777666654
No 218
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.63 E-value=1.6e-13 Score=132.92 Aligned_cols=272 Identities=15% Similarity=0.140 Sum_probs=170.5
Q ss_pred CCceeeEeecCCcceEEEEECC-CCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEE
Q 016974 98 TSQKTHAIKLPCAWVMTCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLIT 176 (379)
Q Consensus 98 ~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 176 (379)
+|..+..+..|...+..++.++ ++.++++||.||+|++|++..-....+......++.--...+.++...+.+ ..++.
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~-~~~Av 1115 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG-DQFAV 1115 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC-CeEEE
Confidence 3666777777777777777665 559999999999999999875332222222223333234567777777765 56888
Q ss_pred eeCCCeEEEeecCC--CeeEEEecCcccc-CCccCeEEEE-EeCCCC-cEEEEecCCCcEEEEEccCCccce-EEEeccc
Q 016974 177 SSGDQTCVLWDITT--GLRTSVFGGEFQS-GHTADVLSVS-ISGSNS-RMFVSGSCDSTARLWDTRVASRAV-RTFHGHE 250 (379)
Q Consensus 177 ~~~d~~i~~wd~~~--~~~~~~~~~~~~~-~h~~~v~~~~-~~~~~~-~~l~sg~~d~~i~vwd~~~~~~~~-~~~~~h~ 250 (379)
++.||.|++.++.- ............. ...+.+.++. +....+ ..++-+..-+.|..||++.....- .......
T Consensus 1116 ~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~h 1195 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRH 1195 (1431)
T ss_pred EcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccc
Confidence 89999999998864 1111111111111 1223344332 221222 367778888999999998543211 1122335
Q ss_pred CCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccC---CCEEEEE-E-ecCcEEEEe
Q 016974 251 GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS---GRLLFAG-Y-SNGDCYVWD 325 (379)
Q Consensus 251 ~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~---g~~l~sg-~-~dg~i~iwd 325 (379)
+.|++++.+|.+++++.|...|.+-+||+|=+..+..+..+. ..+++.+..+|- ..+.+++ . ..+.|.+|+
T Consensus 1196 G~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~----~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn 1271 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPA----RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWN 1271 (1431)
T ss_pred cceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcc----cCCcceEEeeccCCCCceEEEecccCCCceeeee
Confidence 789999999999999999999999999999776665553322 234555554443 3355554 4 577899999
Q ss_pred CCCceEEEecccc-----------c----CCccCceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 326 TLLAKVVLNLGSL-----------Q----NSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 326 ~~~~~~~~~~~~~-----------~----~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
..++....++-.. . +.+.-.....++..-+.++.+|+.|..||.||...
T Consensus 1272 ~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1272 METGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred cccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 8776433322110 0 01222223334445567899999999999999764
No 219
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=5.3e-13 Score=125.12 Aligned_cols=235 Identities=14% Similarity=0.148 Sum_probs=149.4
Q ss_pred CcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeC---CCcEEEEEcCCCCCCCCCcceeeeecccccceEEEE
Q 016974 89 GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL---DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQ 165 (379)
Q Consensus 89 ~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 165 (379)
..|.+||. .+.....+..+...+...+|+|||+.|+..+. +..+.+||+.... ...+..+.+.+....
T Consensus 182 ~~l~~~d~-dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~--------~~~l~~~~g~~~~~~ 252 (435)
T PRK05137 182 KRLAIMDQ-DGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ--------RELVGNFPGMTFAPR 252 (435)
T ss_pred eEEEEECC-CCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc--------EEEeecCCCcccCcE
Confidence 37888886 45556667777778999999999999988764 4679999986532 122344556677889
Q ss_pred EecCCCceEEEeeCCCe--EEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCC--cEEEEEccCCcc
Q 016974 166 YVPDEDTHLITSSGDQT--CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS--TARLWDTRVASR 241 (379)
Q Consensus 166 ~~~~~~~~l~s~~~d~~--i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~--~i~vwd~~~~~~ 241 (379)
|+|++...+++.+.++. |.+||+.++..... ..+........|+|....++++...++ .|.+||+...
T Consensus 253 ~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~L------t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~-- 324 (435)
T PRK05137 253 FSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRL------TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS-- 324 (435)
T ss_pred ECCCCCEEEEEEecCCCceEEEEECCCCceEEc------cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC--
Confidence 99987665567666665 66678877654332 223334456778874443444433444 5677776532
Q ss_pred ceEEEecccCCeeEEEEccCCCEEEEeeCC---CeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEec
Q 016974 242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDD---GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN 318 (379)
Q Consensus 242 ~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D---~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~d 318 (379)
..+.+..+...+....|+|||++|+..+.+ ..|.+||+.++.. ..+... ..+....|+|||++|+....+
T Consensus 325 ~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~------~~~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 325 NPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSG------FLVEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred CeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCC------CCCCCCeECCCCCEEEEEEcc
Confidence 233343345566778999999999877643 3688889765443 222111 124578999999988775543
Q ss_pred ------CcEEEEeCCCceEEEecccccCCccCceeEEEECC
Q 016974 319 ------GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 353 (379)
Q Consensus 319 ------g~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 353 (379)
..|+++|+..+.. ..+. ..+.+...+|+|
T Consensus 398 ~~~~~~~~L~~~dl~g~~~-~~l~-----~~~~~~~p~Wsp 432 (435)
T PRK05137 398 PGSGGAPKLYTVDLTGRNE-REVP-----TPGDASDPAWSP 432 (435)
T ss_pred CCCCCcceEEEEECCCCce-EEcc-----CCCCccCcccCC
Confidence 2578888755443 2331 122355667776
No 220
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.62 E-value=5.8e-13 Score=111.62 Aligned_cols=239 Identities=11% Similarity=0.218 Sum_probs=152.8
Q ss_pred eEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeC------CCeEEE
Q 016974 112 VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG------DQTCVL 185 (379)
Q Consensus 112 v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~------d~~i~~ 185 (379)
..+++|+.|...+++|..+| .+||+.++-.+.... +...+.- .+..+-| ..+...+.|+. .+.|.|
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r----~~~~~G~-~~veMLf--R~N~laLVGGg~~pky~pNkviI 79 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASR----QFIDGGF-KIVEMLF--RSNYLALVGGGSRPKYPPNKVII 79 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhh----ccccCch-hhhhHhh--hhceEEEecCCCCCCCCCceEEE
Confidence 45588999998888887766 799998863221100 0000000 1111111 11222334443 367999
Q ss_pred eecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEeccc--CCeeEEEEccCCC
Q 016974 186 WDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE--GDVNTVKFFPDGN 263 (379)
Q Consensus 186 wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~--~~v~~v~~sp~g~ 263 (379)
||=....++..+ ....+|.++.+.+. .++. -..+.|.||......+.++.+.--. ....++.-+-+-.
T Consensus 80 WDD~k~~~i~el------~f~~~I~~V~l~r~---riVv-vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~ 149 (346)
T KOG2111|consen 80 WDDLKERCIIEL------SFNSEIKAVKLRRD---RIVV-VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKS 149 (346)
T ss_pred EecccCcEEEEE------EeccceeeEEEcCC---eEEE-EecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCce
Confidence 994444444333 34567888888752 3333 3456899999875545555554222 2233333222444
Q ss_pred EEEEee-CCCeEEEEECCCCcee-EEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCc-EEEEeCCCceEEEecccccC
Q 016974 264 RFGTGS-DDGTCRLFDIRTGHQL-QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGD-CYVWDTLLAKVVLNLGSLQN 340 (379)
Q Consensus 264 ~l~s~s-~D~~i~iwd~~~~~~~-~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~-i~iwd~~~~~~~~~~~~~~~ 340 (379)
+||.-| .-|.|+|-|+...+.- ..+.. .|...|.|++.+-+|.+||+++..|+ |+|||..++..+.++.. .
T Consensus 150 ~LafPg~k~GqvQi~dL~~~~~~~p~~I~----AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR--G 223 (346)
T KOG2111|consen 150 LLAFPGFKTGQVQIVDLASTKPNAPSIIN----AHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR--G 223 (346)
T ss_pred EEEcCCCccceEEEEEhhhcCcCCceEEE----cccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec--C
Confidence 565555 5688999998765441 11222 23457999999999999999999997 78999999998887742 2
Q ss_pred CccCceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 341 SHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 341 ~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
.-...|+|++||||+++||.+|.-|||.||.+..
T Consensus 224 ~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 224 VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 2345799999999999999999999999998765
No 221
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=1.6e-13 Score=117.87 Aligned_cols=271 Identities=15% Similarity=0.148 Sum_probs=184.1
Q ss_pred cccEEEEEeeCCCC--eEEEEcCCCcEEEEECCCCceeeEe------ecCCcceEEEEECCCCCEEEEeeCCCcEEEEEc
Q 016974 67 AGKVYSLDWTSERN--RIVSASQDGRLIVWNALTSQKTHAI------KLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNL 138 (379)
Q Consensus 67 ~~~v~~~~~~~~~~--~l~s~s~D~~v~iwd~~~~~~~~~~------~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~ 138 (379)
...|..++|.-+++ .|..++.|..+.............+ .+..+.|..++. -...|+++-.+|.+.+|..
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~--~dg~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKL--ADGTLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhh--cCCEEEEEecCCcEEEEec
Confidence 34577788876654 4666668888888777655443322 223333443332 2345666678899999998
Q ss_pred CCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCC--CeEEEeecCCCeeEEEecCccccC------CccCeE
Q 016974 139 NSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD--QTCVLWDITTGLRTSVFGGEFQSG------HTADVL 210 (379)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d--~~i~~wd~~~~~~~~~~~~~~~~~------h~~~v~ 210 (379)
..+.-.... . ..+.-+ ..+..+.-.+.....+++|+.. +.+++||+..... ++.....+. -.-.++
T Consensus 133 k~~d~hss~--l-~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~q--iw~aKNvpnD~L~LrVPvW~t 206 (412)
T KOG3881|consen 133 KSGDLHSSK--L-IKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQ--IWSAKNVPNDRLGLRVPVWIT 206 (412)
T ss_pred cCCcccccc--c-eeeecC-CceeeeccCCCCCceEecCchhcccceeeeeccccee--eeeccCCCCccccceeeeeec
Confidence 754321111 1 112222 3355566666666778889999 8899999987633 222111110 112345
Q ss_pred EEEEeCC-CCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEe
Q 016974 211 SVSISGS-NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY 289 (379)
Q Consensus 211 ~~~~~~~-~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~ 289 (379)
++.|-+. ....|++++.-+.+|+||.+..++++..+.--+.++.++...|+|+.+.+|-.-+.+..||+++++.+...+
T Consensus 207 di~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~ 286 (412)
T KOG3881|consen 207 DIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGL 286 (412)
T ss_pred cceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeecccc
Confidence 6666543 256899999999999999999999999888778899999999999999999999999999999987665533
Q ss_pred eccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCC
Q 016974 290 QQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD 354 (379)
Q Consensus 290 ~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d 354 (379)
.. -.+.++++..+|+++++++++-|+.|+|+|+.+.+.+... .-...++++-+.++
T Consensus 287 kg----~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kv-----YvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 287 KG----ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKV-----YVKSRLTFILLRDD 342 (412)
T ss_pred CC----ccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhh-----hhhccccEEEecCC
Confidence 22 2346899999999999999999999999999875544322 12334566666543
No 222
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=3.6e-14 Score=124.95 Aligned_cols=262 Identities=21% Similarity=0.303 Sum_probs=186.5
Q ss_pred EeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCC-CceEEEeeCCCe
Q 016974 104 AIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQT 182 (379)
Q Consensus 104 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~d~~ 182 (379)
.+..|.+.|..+.|...|..|+++|.|..+.+||+.... +..+...||...|....|.|.. +..+++++.||.
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~------~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGS------PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ 210 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccC------cccccccccccchhhhhccCCCCCcCceeccccCc
Confidence 455678889999999999999999999999999987532 2344556899889888898854 456999999999
Q ss_pred EEEeecC-CCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccc--eEEEecccC---CeeEE
Q 016974 183 CVLWDIT-TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA--VRTFHGHEG---DVNTV 256 (379)
Q Consensus 183 i~~wd~~-~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~--~~~~~~h~~---~v~~v 256 (379)
+++=.+. ++....+ .....|.+.|.-++.-|.....|.|++.|+.+.-.|++..... ...-..+.. ..+.+
T Consensus 211 vr~s~i~~t~~~e~t---~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~I 287 (559)
T KOG1334|consen 211 VRVSEILETGYVENT---KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTI 287 (559)
T ss_pred eeeeeeccccceecc---eecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeE
Confidence 9987653 2322211 1124688889999998888889999999999999998754221 112223333 46788
Q ss_pred EEccC-CCEEEEeeCCCeEEEEECCCCce------eEEEeeccCC-CCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCC
Q 016974 257 KFFPD-GNRFGTGSDDGTCRLFDIRTGHQ------LQVYYQQHGE-NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (379)
Q Consensus 257 ~~sp~-g~~l~s~s~D~~i~iwd~~~~~~------~~~~~~~~~~-~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~ 328 (379)
+..|. .+++++++.|..+++||.+.-.. +..+...|.. .....|++++|+.+|.-|.+...|-.||+|....
T Consensus 288 a~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~ 367 (559)
T KOG1334|consen 288 AVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSM 367 (559)
T ss_pred ecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccc
Confidence 88885 45899999999999999875322 2223222211 1223589999999998888899999999996422
Q ss_pred ceE--------E-EecccccCCccC--ceeEEEE-CCCCCeEEEeeCCCcEEEEecCc
Q 016974 329 AKV--------V-LNLGSLQNSHEG--RITCLGL-SADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 329 ~~~--------~-~~~~~~~~~h~~--~v~~~~~-s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
+.- . ......-++|.. .|.++-| .|..+|++|||.=|.|.||+-..
T Consensus 368 ~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t 425 (559)
T KOG1334|consen 368 GDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKT 425 (559)
T ss_pred ccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecch
Confidence 211 0 001111245643 3666665 68899999999999999998544
No 223
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.59 E-value=7.7e-13 Score=111.98 Aligned_cols=286 Identities=16% Similarity=0.282 Sum_probs=172.6
Q ss_pred cccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCce----e-eEeecCC------------cceEEEEECCCCC--EEEEe
Q 016974 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQK----T-HAIKLPC------------AWVMTCAFSPTGQ--SVACG 127 (379)
Q Consensus 67 ~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~----~-~~~~~~~------------~~v~~~~~s~~g~--~l~~~ 127 (379)
.+-|.+|.|...|.+||||..+|.|-++.-..... . ..+..|. ..+..+.|.+++. .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 34688999999999999999999999996543221 1 1122221 3467788887654 67777
Q ss_pred eCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCcc
Q 016974 128 GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA 207 (379)
Q Consensus 128 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~ 207 (379)
..|.++++|.+............. ..+..+.++++.. .+.+..|-.+.. . +.. .+..+|.-
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~--~~~~~~~~~~lr~-------p~~~~~~~~vea----~--prR----v~aNaHty 165 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLP--EEGPPGTITSLRL-------PVEGRHDLEVEA----S--PRR----VYANAHTY 165 (433)
T ss_pred cCCcceeeeeeecccccccccccc--ccCCCCccceeec-------eeeccccceeee----e--eee----ecccccee
Confidence 889999999987543221110000 0111122222221 011111111100 0 111 12357888
Q ss_pred CeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEE--ecc-----cCCeeEEEEccC-CCEEEEeeCCCeEEEEEC
Q 016974 208 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF--HGH-----EGDVNTVKFFPD-GNRFGTGSDDGTCRLFDI 279 (379)
Q Consensus 208 ~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~--~~h-----~~~v~~v~~sp~-g~~l~s~s~D~~i~iwd~ 279 (379)
.+.++.++. +...+++ +.|=.|.+|.+....+..... +.+ ..-|++..|+|. .+.++-.|..|+|++.|+
T Consensus 166 hiNSIS~Ns-D~Et~lS-ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDm 243 (433)
T KOG1354|consen 166 HINSISVNS-DKETFLS-ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDM 243 (433)
T ss_pred EeeeeeecC-ccceEee-ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeec
Confidence 899999884 6666664 567789999987655443322 222 235889999994 567787888999999999
Q ss_pred CCCceeE----EEeeccCC-------CCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCC-ceEEEecccccC-------
Q 016974 280 RTGHQLQ----VYYQQHGE-------NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL-AKVVLNLGSLQN------- 340 (379)
Q Consensus 280 ~~~~~~~----~~~~~~~~-------~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~------- 340 (379)
|...... .+..+... .-...|+.+.|+++|+|+++-+.- +|.+||+.. .+++.+......
T Consensus 244 R~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyl-tvk~wD~nme~~pv~t~~vh~~lr~kLc~ 322 (433)
T KOG1354|consen 244 RQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYL-TVKLWDLNMEAKPVETYPVHEYLRSKLCS 322 (433)
T ss_pred hhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccc-eeEEEeccccCCcceEEeehHhHHHHHHH
Confidence 9543221 11111000 012347899999999999876433 799999843 333332211000
Q ss_pred -CccCc---eeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 341 -SHEGR---ITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 341 -~h~~~---v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
.-... -..++|+.++..++|||..+..++|+...
T Consensus 323 lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 323 LYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLAR 360 (433)
T ss_pred HhhccchhheeEEEEcCCcceEecccccceEEEecCCC
Confidence 01112 25678999999999999999999999443
No 224
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=5.6e-13 Score=114.54 Aligned_cols=244 Identities=14% Similarity=0.204 Sum_probs=165.8
Q ss_pred ceEEEEECCCC--CEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeec
Q 016974 111 WVMTCAFSPTG--QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI 188 (379)
Q Consensus 111 ~v~~~~~s~~g--~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~ 188 (379)
.+.+++|..++ +.+...+.|..+....+..+.... ..-......+.++.|..+... +..|++|-.+|.+.+|..
T Consensus 57 ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s-~~~~~~~~~l~~~~I~gl~~~---dg~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 57 RISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISS-SLDDAKTVSLGTKSIKGLKLA---DGTLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhheeecCCceeEeeccccCcccccccccCCcccc-ccccccccccccccccchhhc---CCEEEEEecCCcEEEEec
Confidence 34555565444 345555455556665554321110 000011223344555555443 347899999999999988
Q ss_pred CCCee----EEEecCccccCCccCeEEEEEeCCCCcEEEEecCC--CcEEEEEccCCccceEEEeccc-----------C
Q 016974 189 TTGLR----TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD--STARLWDTRVASRAVRTFHGHE-----------G 251 (379)
Q Consensus 189 ~~~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d--~~i~vwd~~~~~~~~~~~~~h~-----------~ 251 (379)
..+-. ...+ .....+..+.-.+....++++|+.. ..+++||+... .+.+.+.+ -
T Consensus 133 k~~d~hss~l~~l------a~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~---~qiw~aKNvpnD~L~LrVPv 203 (412)
T KOG3881|consen 133 KSGDLHSSKLIKL------ATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS---KQIWSAKNVPNDRLGLRVPV 203 (412)
T ss_pred cCCccccccceee------ecCCceeeeccCCCCCceEecCchhcccceeeeecccc---eeeeeccCCCCccccceeee
Confidence 74321 1111 1123455555566667788889999 88999999754 33343322 2
Q ss_pred CeeEEEEccC--CCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCc
Q 016974 252 DVNTVKFFPD--GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA 329 (379)
Q Consensus 252 ~v~~v~~sp~--g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~ 329 (379)
+++++.|-|. ...||++..-+.+++||.+.++.....+. .. ..+++++...|+|++|++|..-|.+..||.+.+
T Consensus 204 W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd-~~---E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~ 279 (412)
T KOG3881|consen 204 WITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFD-FL---ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG 279 (412)
T ss_pred eeccceecCCCCCceEEEEecceeEEEecCcccCcceeEec-cc---cCcceeeeecCCCcEEEEecccchhheecccCc
Confidence 4678899887 88999999999999999987653322211 11 235899999999999999999999999999887
Q ss_pred eEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 330 KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 330 ~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
+.... ...+..+.|.++..+|...+||+++.|..|||+|+..
T Consensus 280 kl~g~---~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 280 KLLGC---GLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred eeecc---ccCCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 75433 2367789999999999999999999999999999876
No 225
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=1.3e-11 Score=115.20 Aligned_cols=214 Identities=14% Similarity=0.162 Sum_probs=134.9
Q ss_pred cEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEee---CCCeEEEeecCCCeeEEEecCccccCCccC
Q 016974 132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS---GDQTCVLWDITTGLRTSVFGGEFQSGHTAD 208 (379)
Q Consensus 132 ~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~---~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~ 208 (379)
.+.+||.+... .+.+..+...+...+|+|++.. |+..+ .+..+.+||+.++....... ....
T Consensus 180 ~l~~~d~dg~~--------~~~lt~~~~~~~~p~wSPDG~~-la~~s~~~g~~~i~i~dl~~G~~~~l~~------~~~~ 244 (429)
T PRK03629 180 ELRVSDYDGYN--------QFVVHRSPQPLMSPAWSPDGSK-LAYVTFESGRSALVIQTLANGAVRQVAS------FPRH 244 (429)
T ss_pred eEEEEcCCCCC--------CEEeecCCCceeeeEEcCCCCE-EEEEEecCCCcEEEEEECCCCCeEEccC------CCCC
Confidence 56777765321 1223445667889999998754 54332 34579999998875433221 1122
Q ss_pred eEEEEEeCCCCcEEEEecCCC--cEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCC-Ce--EEEEECCCCc
Q 016974 209 VLSVSISGSNSRMFVSGSCDS--TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD-GT--CRLFDIRTGH 283 (379)
Q Consensus 209 v~~~~~~~~~~~~l~sg~~d~--~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D-~~--i~iwd~~~~~ 283 (379)
+....|+|.+..++++.+.++ .|.+||+... . ...+..+...+....|+|||+.|+..+.+ +. |.++|+.++.
T Consensus 245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg-~-~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~ 322 (429)
T PRK03629 245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG-Q-IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA 322 (429)
T ss_pred cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCC-C-EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC
Confidence 345778885544555555555 4888898643 2 33444445567889999999999877764 44 4455776654
Q ss_pred eeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEec---CcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEE
Q 016974 284 QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN---GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCT 360 (379)
Q Consensus 284 ~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s 360 (379)
....... ........|+|||++|+..+.+ ..|++||+.++... .+. ..+ ......|+|||+.|+.
T Consensus 323 ~~~lt~~------~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt---~~~--~~~~p~~SpDG~~i~~ 390 (429)
T PRK03629 323 PQRITWE------GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLT---DTF--LDETPSIAPNGTMVIY 390 (429)
T ss_pred eEEeecC------CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeC---CCC--CCCCceECCCCCEEEE
Confidence 4322211 1124568899999998876543 35888998776543 221 111 2245689999999999
Q ss_pred eeCCCc---EEEEecCc
Q 016974 361 GSWDTN---LKIWAFGG 374 (379)
Q Consensus 361 ~s~D~~---i~vw~~~~ 374 (379)
++.|+. ++++++++
T Consensus 391 ~s~~~~~~~l~~~~~~G 407 (429)
T PRK03629 391 SSSQGMGSVLNLVSTDG 407 (429)
T ss_pred EEcCCCceEEEEEECCC
Confidence 998875 67777765
No 226
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=3e-13 Score=115.15 Aligned_cols=197 Identities=17% Similarity=0.239 Sum_probs=138.6
Q ss_pred eEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCc
Q 016974 161 VSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS 240 (379)
Q Consensus 161 v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~ 240 (379)
+.-++|++.- ..++++..|-+|++||-... ....+ +...+..|.+++|-|.....|+.|+.. .|.+|......
T Consensus 101 lr~~aWhqH~-~~fava~nddvVriy~ksst-~pt~L----ks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tl 173 (445)
T KOG2139|consen 101 LRGVAWHQHI-IAFAVATNDDVVRIYDKSST-CPTKL----KSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTL 173 (445)
T ss_pred eeeEeechhh-hhhhhhccCcEEEEeccCCC-CCcee----cchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccc
Confidence 5567888743 35889999999999997662 22222 234456899999999888888877765 58899754221
Q ss_pred ---cc----------eEEEecccCCeeEEEEccCCCEEEEee-CCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEc
Q 016974 241 ---RA----------VRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS 306 (379)
Q Consensus 241 ---~~----------~~~~~~h~~~v~~v~~sp~g~~l~s~s-~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs 306 (379)
+. +....|| .+|++++|.+||..+++++ .|..|.|||+.++..+..... ..+.++-+.||
T Consensus 174 n~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~-----glgg~slLkwS 247 (445)
T KOG2139|consen 174 NANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK-----GLGGFSLLKWS 247 (445)
T ss_pred ccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc-----CCCceeeEEEc
Confidence 11 1122345 5899999999999999998 567899999999877654411 23458899999
Q ss_pred cCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEE-EeeCCCcEEEEecCc
Q 016974 307 ISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALC-TGSWDTNLKIWAFGG 374 (379)
Q Consensus 307 ~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~-s~s~D~~i~vw~~~~ 374 (379)
|||.+|+++..|+..++|+.....- .+.. .-.++.|...+|+|+|.+|. +.+..-+++--.+.+
T Consensus 248 Pdgd~lfaAt~davfrlw~e~q~wt---~erw-~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~ 312 (445)
T KOG2139|consen 248 PDGDVLFAATCDAVFRLWQENQSWT---KERW-ILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDG 312 (445)
T ss_pred CCCCEEEEecccceeeeehhcccce---ecce-eccCCceeeeeecCCCCEEEEEEcCCceEEEEeecC
Confidence 9999999999999999996432211 1111 22355899999999998766 444454554444443
No 227
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.56 E-value=1.1e-12 Score=110.51 Aligned_cols=278 Identities=17% Similarity=0.195 Sum_probs=178.1
Q ss_pred EEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEe-eCCCcEEEEEcCCCCCCCCCccee
Q 016974 73 LDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACG-GLDSVCSIFNLNSPTDKDGNLPVS 151 (379)
Q Consensus 73 ~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~d~~i~iw~~~~~~~~~~~~~~~ 151 (379)
++|||+|+++|+++.- .+-|-|.++-+..+.+ .-...|.-+-|..+..+++|+ ..|+.|.+|++..+. -.
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf-~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe-------w~ 84 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF-LCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE-------WY 84 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHHH-HHHHHhhheeeeccceeeeeeeeccceEEEEEeecce-------eE
Confidence 5689999999999876 6778887765533222 223445667788888776665 567799999997642 11
Q ss_pred eeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEec-----
Q 016974 152 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS----- 226 (379)
Q Consensus 152 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~----- 226 (379)
-.+.-....+.++.|+|++...|.+...|-.|.+|.+.+....... -....+..++|++ ++++.+..+
T Consensus 85 ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~------~pK~~~kg~~f~~-dg~f~ai~sRrDCk 157 (447)
T KOG4497|consen 85 CKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP------HPKTNVKGYAFHP-DGQFCAILSRRDCK 157 (447)
T ss_pred EEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec------ccccCceeEEECC-CCceeeeeecccHH
Confidence 1122233457788999998778889999999999999875432211 1112335555554 444433321
Q ss_pred -------------------------------CCCcEEEEEccCCccceEEEeccc-CCeeEEEEccCCCEEEEeeCCCeE
Q 016974 227 -------------------------------CDSTARLWDTRVASRAVRTFHGHE-GDVNTVKFFPDGNRFGTGSDDGTC 274 (379)
Q Consensus 227 -------------------------------~d~~i~vwd~~~~~~~~~~~~~h~-~~v~~v~~sp~g~~l~s~s~D~~i 274 (379)
.+..+-+||.-.. ..+ +.-|. -.+..++|+|.+++|+.|+.|+.+
T Consensus 158 dyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le-ykv--~aYe~~lG~k~v~wsP~~qflavGsyD~~l 234 (447)
T KOG4497|consen 158 DYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE-YKV--YAYERGLGLKFVEWSPCNQFLAVGSYDQML 234 (447)
T ss_pred HHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhh-hee--eeeeeccceeEEEeccccceEEeeccchhh
Confidence 1223456653311 111 11222 357889999999999999999999
Q ss_pred EEEECCCCceeEEEee-------------------------------------------------------------ccC
Q 016974 275 RLFDIRTGHQLQVYYQ-------------------------------------------------------------QHG 293 (379)
Q Consensus 275 ~iwd~~~~~~~~~~~~-------------------------------------------------------------~~~ 293 (379)
|+-|--+.+....+.. ...
T Consensus 235 rvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~ 314 (447)
T KOG4497|consen 235 RVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDF 314 (447)
T ss_pred hhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCC
Confidence 8865433221111000 000
Q ss_pred CCCCCCeEEEEEccCCCEEEEEEec--CcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEe
Q 016974 294 ENEIPHVTSIAFSISGRLLFAGYSN--GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA 371 (379)
Q Consensus 294 ~~~~~~v~~~~fs~~g~~l~sg~~d--g~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~ 371 (379)
.+....+.-++||+|..|+++-.+. ..+.+||+...+....+. ...+|....|.|....|+.+.....+++|.
T Consensus 315 pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-----Qk~piraf~WdP~~prL~vctg~srLY~W~ 389 (447)
T KOG4497|consen 315 PNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-----QKHPIRAFEWDPGRPRLVVCTGKSRLYFWA 389 (447)
T ss_pred CCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-----hccceeEEEeCCCCceEEEEcCCceEEEEc
Confidence 0111235679999999999987543 478999987665544432 234789999999988888887778899998
Q ss_pred cCc
Q 016974 372 FGG 374 (379)
Q Consensus 372 ~~~ 374 (379)
..+
T Consensus 390 psg 392 (447)
T KOG4497|consen 390 PSG 392 (447)
T ss_pred CCC
Confidence 776
No 228
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.55 E-value=1.8e-12 Score=109.77 Aligned_cols=250 Identities=16% Similarity=0.245 Sum_probs=172.3
Q ss_pred eeccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECC-CCceeeEeec-CCcceEEEEECCCCCEEEEeeCCCcEEEEE
Q 016974 60 CRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNAL-TSQKTHAIKL-PCAWVMTCAFSPTGQSVACGGLDSVCSIFN 137 (379)
Q Consensus 60 ~~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~-~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~ 137 (379)
.+.++||.+.|++...-|...-+++.+.|.++|||--. .++.-..+.. -...+.++.+.+....|++|-..+++.-+.
T Consensus 17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs 96 (404)
T KOG1409|consen 17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFA 96 (404)
T ss_pred hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEE
Confidence 35789999999998888888889999999999999543 3443333322 124578888999999999999999998888
Q ss_pred cCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCC
Q 016974 138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS 217 (379)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 217 (379)
+..... +....+....|...|+.+-|+-. ..++++.+.|..+.---.+.+.++.-+... ... ..+.+.-
T Consensus 97 ~sedfn---km~~~r~~~~h~~~v~~~if~~~-~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~--~~~----t~~~~d~- 165 (404)
T KOG1409|consen 97 LSEDFN---KMTFLKDYLAHQARVSAIVFSLT-HEWVLSTGKDKQFAWHCTESGNRLGGYNFE--TPA----SALQFDA- 165 (404)
T ss_pred hhhhhh---hcchhhhhhhhhcceeeEEecCC-ceeEEEeccccceEEEeeccCCcccceEee--ccC----CCCceee-
Confidence 765332 22345566789999999888754 468999999988765444444332111000 000 1111110
Q ss_pred CCcEEEEecCCCcEEEEEccC-CccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCC
Q 016974 218 NSRMFVSGSCDSTARLWDTRV-ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENE 296 (379)
Q Consensus 218 ~~~~l~sg~~d~~i~vwd~~~-~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~ 296 (379)
.+...|-..|.|.+-.+.. .-.++..+.+|.+.+.+++|.|....|.+|..|..+.+||+...+.+....+.+
T Consensus 166 --~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh---- 239 (404)
T KOG1409|consen 166 --LYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGH---- 239 (404)
T ss_pred --EEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccc----
Confidence 0333455555555444322 224677889999999999999999999999999999999997655444333222
Q ss_pred CCCeEEEEEccCCCEEEEEEecCcEEEEeC
Q 016974 297 IPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326 (379)
Q Consensus 297 ~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~ 326 (379)
...|..+.+-+.-+.+.+.+.||.|.+||.
T Consensus 240 ~~kV~~l~~~~~t~~l~S~~edg~i~~w~m 269 (404)
T KOG1409|consen 240 NDKVQALSYAQHTRQLISCGEDGGIVVWNM 269 (404)
T ss_pred hhhhhhhhhhhhheeeeeccCCCeEEEEec
Confidence 224667777777788999999999999985
No 229
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=2.6e-12 Score=115.54 Aligned_cols=279 Identities=15% Similarity=0.214 Sum_probs=182.7
Q ss_pred ccccEEEEEeeCCCCe-EEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCC
Q 016974 66 HAGKVYSLDWTSERNR-IVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDK 144 (379)
Q Consensus 66 H~~~v~~~~~~~~~~~-l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~ 144 (379)
|....+.|..+|||++ +|||-.--.|++||+..-.....-.+....|.-.-++.|-..++---.|.+|.+.....
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G---- 125 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG---- 125 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcC----
Confidence 5555678899999998 57788888999999876443333223333344444444444445445566655443211
Q ss_pred CCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEE
Q 016974 145 DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS 224 (379)
Q Consensus 145 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 224 (379)
..-..++. ..-..+.++... .-|+.++....|.-.+++.|.-+..+. ...+.++++.+++-+ .++++
T Consensus 126 --~hy~~RIP----~~GRDm~y~~~s-cDly~~gsg~evYRlNLEqGrfL~P~~-----~~~~~lN~v~in~~h-gLla~ 192 (703)
T KOG2321|consen 126 --RHYRTRIP----KFGRDMKYHKPS-CDLYLVGSGSEVYRLNLEQGRFLNPFE-----TDSGELNVVSINEEH-GLLAC 192 (703)
T ss_pred --eeeeeecC----cCCccccccCCC-ccEEEeecCcceEEEEccccccccccc-----cccccceeeeecCcc-ceEEe
Confidence 00000100 111234444322 235666666778888888887666552 334678888888754 48899
Q ss_pred ecCCCcEEEEEccCCccceEEE------ecccC-----CeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccC
Q 016974 225 GSCDSTARLWDTRVASRAVRTF------HGHEG-----DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG 293 (379)
Q Consensus 225 g~~d~~i~vwd~~~~~~~~~~~------~~h~~-----~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~ 293 (379)
|+.+|.|..||.+.... +..+ ..|.+ .|+++.|+-+|-.+++|..+|.+.|||+++.+++..- .|+
T Consensus 193 Gt~~g~VEfwDpR~ksr-v~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~k--dh~ 269 (703)
T KOG2321|consen 193 GTEDGVVEFWDPRDKSR-VGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVK--DHG 269 (703)
T ss_pred cccCceEEEecchhhhh-heeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeec--ccC
Confidence 99999999999885432 2222 22333 4999999999999999999999999999998776432 222
Q ss_pred CCCCCCeEEEEEccC--CCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEe
Q 016974 294 ENEIPHVTSIAFSIS--GRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA 371 (379)
Q Consensus 294 ~~~~~~v~~~~fs~~--g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~ 371 (379)
...+|..+.|-+. +..|++. +...++|||-.+++....+. .+..++.+|+-|++..+++|-.+..+-.|-
T Consensus 270 --~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiE-----pt~~lND~C~~p~sGm~f~Ane~~~m~~yy 341 (703)
T KOG2321|consen 270 --YELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIE-----PTSDLNDFCFVPGSGMFFTANESSKMHTYY 341 (703)
T ss_pred --CccceeeecccccCCCceEEec-chHHhhhcccccCCceeecc-----ccCCcCceeeecCCceEEEecCCCcceeEE
Confidence 2346888888665 3344443 44579999998888776653 234589999999999999998887766554
Q ss_pred c
Q 016974 372 F 372 (379)
Q Consensus 372 ~ 372 (379)
+
T Consensus 342 i 342 (703)
T KOG2321|consen 342 I 342 (703)
T ss_pred c
Confidence 3
No 230
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.55 E-value=7.3e-12 Score=105.57 Aligned_cols=273 Identities=18% Similarity=0.217 Sum_probs=180.1
Q ss_pred ccEEEEEeeCCCCeE-EEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCC-EEEEeeCCCcEEEEEcCCCCCCC
Q 016974 68 GKVYSLDWTSERNRI-VSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ-SVACGGLDSVCSIFNLNSPTDKD 145 (379)
Q Consensus 68 ~~v~~~~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~ 145 (379)
+.|.-+.|..|.-++ .....|+.|.+|++...+--..+....+.+.++.|||+|+ .|.+...|-.|.+|.+.+....-
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~ 128 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL 128 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence 567778999887664 4568999999999998888888887788899999999995 56667779999999998642100
Q ss_pred CCcceeeeecccccceEEEEEecCCCceEEEee------------------------------------CCCeEEEeecC
Q 016974 146 GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS------------------------------------GDQTCVLWDIT 189 (379)
Q Consensus 146 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~------------------------------------~d~~i~~wd~~ 189 (379)
+.-.+..+..++|+|++ ++.+-.+ .++.+.+||--
T Consensus 129 --------~~~pK~~~kg~~f~~dg-~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~ 199 (447)
T KOG4497|consen 129 --------LPHPKTNVKGYAFHPDG-QFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNV 199 (447)
T ss_pred --------ecccccCceeEEECCCC-ceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecch
Confidence 00001112333444432 1111111 12334566632
Q ss_pred CCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccC---------------C---------------
Q 016974 190 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV---------------A--------------- 239 (379)
Q Consensus 190 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~---------------~--------------- 239 (379)
-...+..+ .-.-.+..+.++| -+++++.|+.|+.+|+-+--+ +
T Consensus 200 Leykv~aY------e~~lG~k~v~wsP-~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql 272 (447)
T KOG4497|consen 200 LEYKVYAY------ERGLGLKFVEWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQL 272 (447)
T ss_pred hhheeeee------eeccceeEEEecc-ccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhh
Confidence 22222221 1224678889998 457999999999988754110 0
Q ss_pred -------------------cc----------ceEEEec------ccCCeeEEEEccCCCEEEEeeC--CCeEEEEECCCC
Q 016974 240 -------------------SR----------AVRTFHG------HEGDVNTVKFFPDGNRFGTGSD--DGTCRLFDIRTG 282 (379)
Q Consensus 240 -------------------~~----------~~~~~~~------h~~~v~~v~~sp~g~~l~s~s~--D~~i~iwd~~~~ 282 (379)
++ .+..++. -...+-.++|++|..|+++-.+ -+.+.+||++..
T Consensus 273 ~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l 352 (447)
T KOG4497|consen 273 LHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNL 352 (447)
T ss_pred cccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhh
Confidence 00 0000010 0113567899999999988643 357999999976
Q ss_pred ceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEee
Q 016974 283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS 362 (379)
Q Consensus 283 ~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s 362 (379)
+....+.+. .+|....|+|....|+.......+++|.......+...+ .+ -.|..+.|.-+|.+++-.+
T Consensus 353 ~l~avLiQk------~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~---~G--F~i~~l~W~~~g~~i~l~~ 421 (447)
T KOG4497|consen 353 KLHAVLIQK------HPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPK---KG--FNIQKLQWLQPGEFIVLCG 421 (447)
T ss_pred hhhhhhhhc------cceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCC---CC--ceeeeEEecCCCcEEEEEc
Confidence 654444432 358999999999988888877889999876655554331 22 4799999999999999999
Q ss_pred CCCcE
Q 016974 363 WDTNL 367 (379)
Q Consensus 363 ~D~~i 367 (379)
.|...
T Consensus 422 kDafc 426 (447)
T KOG4497|consen 422 KDAFC 426 (447)
T ss_pred CCceE
Confidence 98754
No 231
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=3.5e-12 Score=119.49 Aligned_cols=215 Identities=17% Similarity=0.134 Sum_probs=137.9
Q ss_pred CcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeC---CCeEEEeecCCCeeEEEecCccccCCcc
Q 016974 131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG---DQTCVLWDITTGLRTSVFGGEFQSGHTA 207 (379)
Q Consensus 131 ~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~---d~~i~~wd~~~~~~~~~~~~~~~~~h~~ 207 (379)
..+.+||.+... .+.+..+...+....|+|++. .|+..+. +..|.+||+.++...... ....
T Consensus 184 ~~l~i~D~~g~~--------~~~lt~~~~~v~~p~wSpDg~-~la~~s~~~~~~~l~~~dl~~g~~~~l~------~~~g 248 (433)
T PRK04922 184 YALQVADSDGYN--------PQTILRSAEPILSPAWSPDGK-KLAYVSFERGRSAIYVQDLATGQRELVA------SFRG 248 (433)
T ss_pred EEEEEECCCCCC--------ceEeecCCCccccccCCCCCC-EEEEEecCCCCcEEEEEECCCCCEEEec------cCCC
Confidence 357778764321 123445666788899999875 5665543 346999999887654322 1222
Q ss_pred CeEEEEEeCCCCcEEEEecCCC--cEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeC-CCe--EEEEECCCC
Q 016974 208 DVLSVSISGSNSRMFVSGSCDS--TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DGT--CRLFDIRTG 282 (379)
Q Consensus 208 ~v~~~~~~~~~~~~l~sg~~d~--~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~-D~~--i~iwd~~~~ 282 (379)
......|+|.+..++++.+.++ .|.+||+... ....+..+.......+|+|||++|+..++ ++. |.++|+.++
T Consensus 249 ~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g--~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g 326 (433)
T PRK04922 249 INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSR--QLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG 326 (433)
T ss_pred CccCceECCCCCEEEEEEeCCCCceEEEEECCCC--CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 3446788885555656666665 5888888754 23445555555678899999999987774 444 666777666
Q ss_pred ceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecC---cEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEE
Q 016974 283 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG---DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALC 359 (379)
Q Consensus 283 ~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg---~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~ 359 (379)
+....... + ......+|||+|++|+..+.++ .|++||..+++.. .+. +........|+|||++|+
T Consensus 327 ~~~~lt~~--g----~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-----~~~~~~~p~~spdG~~i~ 394 (433)
T PRK04922 327 SAERLTFQ--G----NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-----PGSLDESPSFAPNGSMVL 394 (433)
T ss_pred CeEEeecC--C----CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-----CCCCCCCceECCCCCEEE
Confidence 54322211 1 1234689999999998765443 5999998776543 331 112334568999999988
Q ss_pred EeeCC---CcEEEEecCc
Q 016974 360 TGSWD---TNLKIWAFGG 374 (379)
Q Consensus 360 s~s~D---~~i~vw~~~~ 374 (379)
..+.+ +.|++++.++
T Consensus 395 ~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 395 YATREGGRGVLAAVSTDG 412 (433)
T ss_pred EEEecCCceEEEEEECCC
Confidence 77664 3577777765
No 232
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=9.8e-12 Score=116.61 Aligned_cols=201 Identities=15% Similarity=0.126 Sum_probs=132.6
Q ss_pred eecccccceEEEEEecCCCceEEEee---CCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCC
Q 016974 153 MLSGHKGYVSCCQYVPDEDTHLITSS---GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS 229 (379)
Q Consensus 153 ~~~~h~~~v~~~~~~~~~~~~l~s~~---~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~ 229 (379)
.+..|...+.+..|+|++. .|+..+ .+..|.+||+.++..... ..+...+....|+|.+..++++.+.++
T Consensus 196 ~lt~~~~~v~~p~wSpDG~-~lay~s~~~g~~~i~~~dl~~g~~~~l------~~~~g~~~~~~~SPDG~~la~~~~~~g 268 (435)
T PRK05137 196 YLTDGSSLVLTPRFSPNRQ-EITYMSYANGRPRVYLLDLETGQRELV------GNFPGMTFAPRFSPDGRKVVMSLSQGG 268 (435)
T ss_pred EEecCCCCeEeeEECCCCC-EEEEEEecCCCCEEEEEECCCCcEEEe------ecCCCcccCcEECCCCCEEEEEEecCC
Confidence 4556777899999999875 555544 356899999988765332 123345567788885555566777766
Q ss_pred c--EEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeC-CC--eEEEEECCCCceeEEEeeccCCCCCCCeEEEE
Q 016974 230 T--ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DG--TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIA 304 (379)
Q Consensus 230 ~--i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~-D~--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 304 (379)
. |.+||+... ....+..+........|+|||+.|+..+. ++ .|.++|+.++........ ...+....
T Consensus 269 ~~~Iy~~d~~~~--~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~------~~~~~~~~ 340 (435)
T PRK05137 269 NTDIYTMDLRSG--TTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFG------GGRYSTPV 340 (435)
T ss_pred CceEEEEECCCC--ceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecC------CCcccCeE
Confidence 6 666676543 34455556666778999999999987774 33 588889876654332211 12345678
Q ss_pred EccCCCEEEEEEec---CcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCC------CcEEEEecCc
Q 016974 305 FSISGRLLFAGYSN---GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD------TNLKIWAFGG 374 (379)
Q Consensus 305 fs~~g~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D------~~i~vw~~~~ 374 (379)
|+|+|++|+....+ ..|.+||...+.. ..+. .. ..+....|+|||+.|+..+.+ ..+++.++++
T Consensus 341 ~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt---~~--~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 341 WSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT---SG--FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG 413 (435)
T ss_pred ECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc---CC--CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence 99999999876543 2688888754433 2221 11 235678999999998875553 2466667655
No 233
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=8.6e-12 Score=116.51 Aligned_cols=193 Identities=20% Similarity=0.226 Sum_probs=124.9
Q ss_pred ecccccceEEEEEecCCCceEEEeeC---CCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCc
Q 016974 154 LSGHKGYVSCCQYVPDEDTHLITSSG---DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST 230 (379)
Q Consensus 154 ~~~h~~~v~~~~~~~~~~~~l~s~~~---d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~ 230 (379)
+..+...+.+.+|+|++. .|+..+. ...|.+||+.++...... .....+....|+|....++++.+.++.
T Consensus 191 l~~~~~~v~~p~wSPDG~-~la~~s~~~~~~~I~~~dl~~g~~~~l~------~~~g~~~~~~~SPDG~~la~~~~~~g~ 263 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGT-KLAYVSFESKKPVVYVHDLATGRRRVVA------NFKGSNSAPAWSPDGRTLAVALSRDGN 263 (427)
T ss_pred eccCCCCcccceEcCCCC-EEEEEEccCCCcEEEEEECCCCCEEEee------cCCCCccceEECCCCCEEEEEEccCCC
Confidence 445667788899999875 4555443 245999999888654332 112334567888855555567788888
Q ss_pred EEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeC-CCeEEEEEC--CCCceeEEEeeccCCCCCCCeEEEEEcc
Q 016974 231 ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DGTCRLFDI--RTGHQLQVYYQQHGENEIPHVTSIAFSI 307 (379)
Q Consensus 231 i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~-D~~i~iwd~--~~~~~~~~~~~~~~~~~~~~v~~~~fs~ 307 (379)
.++|.+.........+..+.+......|+|||+.|+..++ ++...||.+ .++........ + ......+|||
T Consensus 264 ~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~--g----~~~~~~~~Sp 337 (427)
T PRK02889 264 SQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFT--G----SYNTSPRISP 337 (427)
T ss_pred ceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecC--C----CCcCceEECC
Confidence 8888664332334455555555677899999999887664 456666654 44433222211 1 1233578999
Q ss_pred CCCEEEEEEecC---cEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCC
Q 016974 308 SGRLLFAGYSNG---DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT 365 (379)
Q Consensus 308 ~g~~l~sg~~dg---~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~ 365 (379)
+|++|+..+.++ .|++||..+++... +. .. .......|+|||+.|+.++.++
T Consensus 338 DG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt---~~--~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 338 DGKLLAYISRVGGAFKLYVQDLATGQVTA-LT---DT--TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred CCCEEEEEEccCCcEEEEEEECCCCCeEE-cc---CC--CCccCceECCCCCEEEEEEecC
Confidence 999998776554 69999987765432 21 11 1235678999999998877654
No 234
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=1.2e-11 Score=111.17 Aligned_cols=273 Identities=17% Similarity=0.251 Sum_probs=161.9
Q ss_pred cEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEE-----eeCC-----CcEEEEEc
Q 016974 69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVAC-----GGLD-----SVCSIFNL 138 (379)
Q Consensus 69 ~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-----~~~d-----~~i~iw~~ 138 (379)
++...+++++|+++| .+.+..++|++..++..+.+.... .+..+.|+|-|.+|.+ .-.+ ..+.+|++
T Consensus 36 ~~~v~~~S~~G~lfA-~~~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~v 112 (566)
T KOG2315|consen 36 PCNVFAYSNNGRLFA-YSDNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNV 112 (566)
T ss_pred cceeEEEcCCCcEEE-EEcCCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeeee
Confidence 456677888876665 566778999999888655444443 6888999999999876 1122 33568877
Q ss_pred CCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCC-
Q 016974 139 NSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS- 217 (379)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~- 217 (379)
...... .......... .+..|+.++ .|+.=-..+.+.+|++.+-.... ..-|...+..+.++|.
T Consensus 113 et~~~~------s~~q~k~Q~~-W~~qfs~dE--sl~arlv~nev~f~~~~~f~~~~------~kl~~~~i~~f~lSpgp 177 (566)
T KOG2315|consen 113 ETGVQR------SQIQKKMQNG-WVPQFSIDE--SLAARLVSNEVQFYDLGSFKTIQ------HKLSVSGITMLSLSPGP 177 (566)
T ss_pred ccceeh------hheehhhhcC-cccccccch--hhhhhhhcceEEEEecCCcccee------eeeeccceeeEEecCCC
Confidence 642110 0000011111 345666653 23333334567777665421110 0112333444444433
Q ss_pred CCcEEEE-----ecCCCcEEEEEccC------------------------------------------------------
Q 016974 218 NSRMFVS-----GSCDSTARLWDTRV------------------------------------------------------ 238 (379)
Q Consensus 218 ~~~~l~s-----g~~d~~i~vwd~~~------------------------------------------------------ 238 (379)
....+|+ ++.-+.+|||....
T Consensus 178 ~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~ 257 (566)
T KOG2315|consen 178 EPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLA 257 (566)
T ss_pred CCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEE
Confidence 1111111 22233344443220
Q ss_pred --CccceEEEecccCCeeEEEEccCCCEEEEe--eCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEE
Q 016974 239 --ASRAVRTFHGHEGDVNTVKFFPDGNRFGTG--SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA 314 (379)
Q Consensus 239 --~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~--s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~s 314 (379)
+....-.+ ..+++|+++.|+|+|+-++.+ -+=-++.|||++ +..+..+- .++-+++-|+|.|++|+.
T Consensus 258 t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~-------egpRN~~~fnp~g~ii~l 328 (566)
T KOG2315|consen 258 TQGESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP-------EGPRNTAFFNPHGNIILL 328 (566)
T ss_pred ecCceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC-------CCCccceEECCCCCEEEE
Confidence 10111111 236899999999999877654 466789999987 55554431 134578999999999887
Q ss_pred EEe---cCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeC------CCcEEEEecCc
Q 016974 315 GYS---NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW------DTNLKIWAFGG 374 (379)
Q Consensus 315 g~~---dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~------D~~i~vw~~~~ 374 (379)
++. -|.+.|||+.+.+.+..+.. . .-+-++|+|||++++++.. |+-++||.+.+
T Consensus 329 AGFGNL~G~mEvwDv~n~K~i~~~~a-----~-~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 329 AGFGNLPGDMEVWDVPNRKLIAKFKA-----A-NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred eecCCCCCceEEEeccchhhcccccc-----C-CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 664 47999999988776655432 1 1244689999999998765 68899999987
No 235
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.52 E-value=3.2e-12 Score=105.58 Aligned_cols=117 Identities=18% Similarity=0.375 Sum_probs=87.8
Q ss_pred CccCeEEEEEeCCCCcEE-EEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCC---CeEEEEECC
Q 016974 205 HTADVLSVSISGSNSRMF-VSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD---GTCRLFDIR 280 (379)
Q Consensus 205 h~~~v~~~~~~~~~~~~l-~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D---~~i~iwd~~ 280 (379)
....|.+++|+|.+..++ +.|..++.|.+||++ ...+..+. ...++.+.|+|+|++|++++.+ |.+.+||++
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~--~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~ 133 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK--GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR 133 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc--ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECC
Confidence 345699999998655543 335578899999997 34455553 5678999999999999998744 669999999
Q ss_pred CCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEe------cCcEEEEeCCCceEEE
Q 016974 281 TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS------NGDCYVWDTLLAKVVL 333 (379)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~------dg~i~iwd~~~~~~~~ 333 (379)
+.+.+.... ...++.++|||+|++|+++.. |..++||+.. |+.+.
T Consensus 134 ~~~~i~~~~-------~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~ 184 (194)
T PF08662_consen 134 KKKKISTFE-------HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLY 184 (194)
T ss_pred CCEEeeccc-------cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeE
Confidence 877665432 123789999999999999874 6788999964 55443
No 236
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.52 E-value=1.2e-11 Score=115.78 Aligned_cols=214 Identities=17% Similarity=0.186 Sum_probs=135.3
Q ss_pred CcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCC---CcEEEEEcCCCCCCCCCcceeeeecccccceEEEE
Q 016974 89 GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD---SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQ 165 (379)
Q Consensus 89 ~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 165 (379)
..|.++|.. +.....+..+...+...+|+|+|++|+.+..+ ..+.+|++.... . ..+..+.+.+.++.
T Consensus 170 ~~l~~~d~~-g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~-----~---~~~~~~~~~~~~~~ 240 (417)
T TIGR02800 170 YELQVADYD-GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ-----R---EKVASFPGMNGAPA 240 (417)
T ss_pred ceEEEEcCC-CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC-----E---EEeecCCCCccceE
Confidence 357788864 44445555556668889999999999887654 478999986532 1 12233445566789
Q ss_pred EecCCCceEEEeeCCC--eEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCC--cEEEEEccCCcc
Q 016974 166 YVPDEDTHLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS--TARLWDTRVASR 241 (379)
Q Consensus 166 ~~~~~~~~l~s~~~d~--~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~--~i~vwd~~~~~~ 241 (379)
|+|++..++++.+.++ .|.+||+.++...... .+........|++.+..++++...++ .|.++|+...
T Consensus 241 ~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~------~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~-- 312 (417)
T TIGR02800 241 FSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLT------NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG-- 312 (417)
T ss_pred ECCCCCEEEEEECCCCCccEEEEECCCCCEEECC------CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCC--
Confidence 9998765555655554 5888898876533221 22223344567764333444444444 4666676533
Q ss_pred ceEEEecccCCeeEEEEccCCCEEEEeeCCC---eEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEec
Q 016974 242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG---TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN 318 (379)
Q Consensus 242 ~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~---~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~d 318 (379)
....+..+...+....|+|+|++|+.++.++ .|.+||+.++... .+.. .. ......|+|+|++|+..+.+
T Consensus 313 ~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~-~~-----~~~~p~~spdg~~l~~~~~~ 385 (417)
T TIGR02800 313 EVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTD-TG-----LDESPSFAPNGRMILYATTR 385 (417)
T ss_pred CEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccC-CC-----CCCCceECCCCCEEEEEEeC
Confidence 2334444556677889999999999888776 7899998875432 2211 11 12345899999999887765
Q ss_pred C---cEEEEeC
Q 016974 319 G---DCYVWDT 326 (379)
Q Consensus 319 g---~i~iwd~ 326 (379)
+ .+++.+.
T Consensus 386 ~~~~~l~~~~~ 396 (417)
T TIGR02800 386 GGRGVLGLVST 396 (417)
T ss_pred CCcEEEEEEEC
Confidence 4 3555554
No 237
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.49 E-value=1.1e-10 Score=106.16 Aligned_cols=256 Identities=15% Similarity=0.173 Sum_probs=149.2
Q ss_pred eeccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEee-CCCcEEEEEc
Q 016974 60 CRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGG-LDSVCSIFNL 138 (379)
Q Consensus 60 ~~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~d~~i~iw~~ 138 (379)
..++......-..+.|+|||+++++++.||.|.++|+.+.+.+.+++... ....+++++||++++++. .++.+.++|.
T Consensus 29 ~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~ 107 (369)
T PF02239_consen 29 VARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDA 107 (369)
T ss_dssp EEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEET
T ss_pred EEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEecc
Confidence 34444333333457799999999999999999999999999999887754 468899999999998876 5889999997
Q ss_pred CCCCCCCCCcceeeeecc-------cccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeE--EEecCccccCCccCe
Q 016974 139 NSPTDKDGNLPVSRMLSG-------HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT--SVFGGEFQSGHTADV 209 (379)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~-------h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~--~~~~~~~~~~h~~~v 209 (379)
.+.. ..+.+.. ....+..+..+|..+.++++--.-+.|-+-|....... ..+. .....
T Consensus 108 ~tle-------~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~------~g~~~ 174 (369)
T PF02239_consen 108 ETLE-------PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK------VGRFP 174 (369)
T ss_dssp TT---------EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--------TTE
T ss_pred cccc-------ceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeec------ccccc
Confidence 6421 2222221 22356666667766555555555577777776554222 2221 11223
Q ss_pred EEEEEeCCCCcEEEE-ecCCCcEEEEEccCCcc-----------------------------------------------
Q 016974 210 LSVSISGSNSRMFVS-GSCDSTARLWDTRVASR----------------------------------------------- 241 (379)
Q Consensus 210 ~~~~~~~~~~~~l~s-g~~d~~i~vwd~~~~~~----------------------------------------------- 241 (379)
....+.+ ++++|+. ......|-++|......
T Consensus 175 ~D~~~dp-dgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v 253 (369)
T PF02239_consen 175 HDGGFDP-DGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSV 253 (369)
T ss_dssp EEEEE-T-TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-
T ss_pred cccccCc-ccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCcccc
Confidence 4455665 4455444 33445666666543211
Q ss_pred -------ceEEEecccCCeeEEEEccCCCEEEEe----eCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCC
Q 016974 242 -------AVRTFHGHEGDVNTVKFFPDGNRFGTG----SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR 310 (379)
Q Consensus 242 -------~~~~~~~h~~~v~~v~~sp~g~~l~s~----s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~ 310 (379)
.++.+....+. .-+.-||+++++... ...++|.++|.++.+.+..+.... ...+..+.|+++|+
T Consensus 254 ~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~----~~~~~h~ef~~dG~ 328 (369)
T PF02239_consen 254 HDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGP----GKRVVHMEFNPDGK 328 (369)
T ss_dssp STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHH----T--EEEEEE-TTSS
T ss_pred chhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccC----CCcEeccEECCCCC
Confidence 11112211222 456779999999887 455899999999886655443211 12378999999999
Q ss_pred EEEEEE--ecCcEEEEeCCCceEEEec
Q 016974 311 LLFAGY--SNGDCYVWDTLLAKVVLNL 335 (379)
Q Consensus 311 ~l~sg~--~dg~i~iwd~~~~~~~~~~ 335 (379)
.+..+. .+|.|.+||..+.+....+
T Consensus 329 ~v~vS~~~~~~~i~v~D~~Tl~~~~~i 355 (369)
T PF02239_consen 329 EVWVSVWDGNGAIVVYDAKTLKEKKRI 355 (369)
T ss_dssp EEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred EEEEEEecCCCEEEEEECCCcEEEEEE
Confidence 776654 3447999999998877655
No 238
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.48 E-value=6.9e-10 Score=100.76 Aligned_cols=280 Identities=15% Similarity=0.158 Sum_probs=160.7
Q ss_pred CcEEEEEC--CCCceeeEe-ecCCcceEEEEECCCCCEEEEeeC----CCcEEEEEcCCCCCCCCCcceeeeecccccce
Q 016974 89 GRLIVWNA--LTSQKTHAI-KLPCAWVMTCAFSPTGQSVACGGL----DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYV 161 (379)
Q Consensus 89 ~~v~iwd~--~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~~~~----d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v 161 (379)
+.|.+|++ .+++....- ........-++++|++++|.++.. ++.|..|.++... +.+.............
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~---g~L~~~~~~~~~g~~p 89 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDT---GTLTLLNSVPSGGSSP 89 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTT---TEEEEEEEEEESSSCE
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCc---ceeEEeeeeccCCCCc
Confidence 67777776 333322111 112233455788999999988876 5689999887531 3333333232112233
Q ss_pred EEEEEecCCCceEEEeeCCCeEEEeecCC-CeeEEE---ecC--c---cccCCccCeEEEEEeCCCCcEEEEecCCCcEE
Q 016974 162 SCCQYVPDEDTHLITSSGDQTCVLWDITT-GLRTSV---FGG--E---FQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 232 (379)
Q Consensus 162 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~---~~~--~---~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~ 232 (379)
..+++.|++...+++--.+|+|.++++.. +..... +.. . ...........+.++|....++++.-....|.
T Consensus 90 ~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~ 169 (345)
T PF10282_consen 90 CHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVY 169 (345)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred EEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEE
Confidence 45778888654445555799999999976 322221 100 0 00112234567888874444444444445799
Q ss_pred EEEccCCccce---EEEe-cccCCeeEEEEccCCCEEEEee-CCCeEEEEECC--CCce--eEEEeec-cCCCCCCCeEE
Q 016974 233 LWDTRVASRAV---RTFH-GHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIR--TGHQ--LQVYYQQ-HGENEIPHVTS 302 (379)
Q Consensus 233 vwd~~~~~~~~---~~~~-~h~~~v~~v~~sp~g~~l~s~s-~D~~i~iwd~~--~~~~--~~~~~~~-~~~~~~~~v~~ 302 (379)
+|++......+ ..+. ........+.|+|+|+++.... .+++|.++++. ++.. ++..... ...........
T Consensus 170 ~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 249 (345)
T PF10282_consen 170 VYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAE 249 (345)
T ss_dssp EEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEE
T ss_pred EEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCcee
Confidence 99987543212 1222 2234567899999999886555 67889999988 3322 1211111 11111125788
Q ss_pred EEEccCCCEEEEEE-ecCcEEEEeCC--CceEEEecccccCCccCceeEEEECCCCCeEEEee-CCCcEEEEecC
Q 016974 303 IAFSISGRLLFAGY-SNGDCYVWDTL--LAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS-WDTNLKIWAFG 373 (379)
Q Consensus 303 ~~fs~~g~~l~sg~-~dg~i~iwd~~--~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s-~D~~i~vw~~~ 373 (379)
++++|||++|+++. .++.|.+|++. +++.. .+..... .......++++|+|++|+++. .+++|.+|+++
T Consensus 250 i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~-~~~~~~~-~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 250 IAISPDGRFLYVSNRGSNSISVFDLDPATGTLT-LVQTVPT-GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEE-TTSSEEEEEECTTTEEEEEEECTTTTTEE-EEEEEEE-SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEecCCCEEEEEeccCCEEEEEEEecCCCceE-EEEEEeC-CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 99999999998876 55689999973 23322 1111111 122357899999999999876 56799999875
No 239
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.46 E-value=3e-12 Score=122.52 Aligned_cols=186 Identities=19% Similarity=0.269 Sum_probs=140.0
Q ss_pred CceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCe--EEE--EEeCCCCcEEEEecCCCcEEEEEccCCccceEEE
Q 016974 171 DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADV--LSV--SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF 246 (379)
Q Consensus 171 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v--~~~--~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~ 246 (379)
+..++.+..++.+-+||...+....... +...+ .+. .....+.-++++|+.-+.|.+|+......+. .+
T Consensus 99 ~k~i~l~~~~ns~~i~d~~~~~~~~~i~------~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~-~l 171 (967)
T KOG0974|consen 99 NKKIALVTSRNSLLIRDSKNSSVLSKIQ------SDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI-RL 171 (967)
T ss_pred cceEEEEEcCceEEEEecccCceehhcC------CCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc-ee
Confidence 4568888999999999987664433321 11111 111 1112345678899999999999987443344 57
Q ss_pred ecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeC
Q 016974 247 HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326 (379)
Q Consensus 247 ~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~ 326 (379)
.||++.|.++.++-||.++++.|+|+++++|++.+.+... ...-.+...|..++|.|+ .+++++.|.+.++|+.
T Consensus 172 ~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~----~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~ 245 (967)
T KOG0974|consen 172 KGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG----CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV 245 (967)
T ss_pred cccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC----cccccccceeEEEEeccc--eeEEeccceEEEEEec
Confidence 8999999999999999999999999999999999877654 222334567999999998 9999999999999975
Q ss_pred CCceEEEecccccCCcc-CceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 327 LLAKVVLNLGSLQNSHE-GRITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 327 ~~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
.. ....++ ..|. ..|..++..++...++|++.|+.+++|++..
T Consensus 246 ~~-~~l~~y----~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 246 NG-TQLEVY----DEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred cc-ceehhh----hhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 43 322233 2343 4689999999999999999999999999876
No 240
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.46 E-value=2e-09 Score=97.72 Aligned_cols=255 Identities=15% Similarity=0.188 Sum_probs=157.6
Q ss_pred EEEEEeeCCCCeEEEEcC----CCcEEEEECCCC--ce--eeEeecCCcceEEEEECCCCCEEEEeeC-CCcEEEEEcCC
Q 016974 70 VYSLDWTSERNRIVSASQ----DGRLIVWNALTS--QK--THAIKLPCAWVMTCAFSPTGQSVACGGL-DSVCSIFNLNS 140 (379)
Q Consensus 70 v~~~~~~~~~~~l~s~s~----D~~v~iwd~~~~--~~--~~~~~~~~~~v~~~~~s~~g~~l~~~~~-d~~i~iw~~~~ 140 (379)
..-++++|++++|+++.. ++.|..|++... +. +..........-.++++|++++|+++.. ++.+.+++++.
T Consensus 39 Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~ 118 (345)
T PF10282_consen 39 PSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDD 118 (345)
T ss_dssp ECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccC
Confidence 345788999999988766 578988887654 22 2233323344566889999999999885 89999999986
Q ss_pred CCCCCCCccee-eee----------cccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCee-EEEecCccccCCccC
Q 016974 141 PTDKDGNLPVS-RML----------SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-TSVFGGEFQSGHTAD 208 (379)
Q Consensus 141 ~~~~~~~~~~~-~~~----------~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~~h~~~ 208 (379)
.. ..... ... ..-.....++.+.|++..++++.-....|.+|++..... +.. ...........
T Consensus 119 ~g----~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~-~~~~~~~~G~G 193 (345)
T PF10282_consen 119 DG----SLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTP-VDSIKVPPGSG 193 (345)
T ss_dssp TS----EEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEE-EEEEECSTTSS
T ss_pred Cc----ccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEE-eeccccccCCC
Confidence 32 11111 111 011234678899998766666666677899999876531 111 11111234455
Q ss_pred eEEEEEeCCCCcEEEEecCCCcEEEEEccCCccce---EEEec----c--cCCeeEEEEccCCCEEEEee-CCCeEEEEE
Q 016974 209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV---RTFHG----H--EGDVNTVKFFPDGNRFGTGS-DDGTCRLFD 278 (379)
Q Consensus 209 v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~---~~~~~----h--~~~v~~v~~sp~g~~l~s~s-~D~~i~iwd 278 (379)
-..+.|++....++++.-.++.|.++++....... ..... . ......++++|||++|.++. .+++|-+|+
T Consensus 194 PRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~ 273 (345)
T PF10282_consen 194 PRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFD 273 (345)
T ss_dssp EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEE
T ss_pred CcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEE
Confidence 67889998656666777788999999987222111 11111 1 12567899999999876654 577899999
Q ss_pred CC--CCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEE-ecCcEEEEeC--CCceEE
Q 016974 279 IR--TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDT--LLAKVV 332 (379)
Q Consensus 279 ~~--~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~-~dg~i~iwd~--~~~~~~ 332 (379)
+. +++....-.... .......++|+|+|++|+++. .++.|.+|+. .++...
T Consensus 274 ~d~~~g~l~~~~~~~~---~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~ 329 (345)
T PF10282_consen 274 LDPATGTLTLVQTVPT---GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLT 329 (345)
T ss_dssp ECTTTTTEEEEEEEEE---SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred EecCCCceEEEEEEeC---CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEE
Confidence 83 233221111111 122368999999999999887 5568999865 455543
No 241
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=7.9e-11 Score=110.47 Aligned_cols=235 Identities=14% Similarity=0.124 Sum_probs=135.9
Q ss_pred cEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCC-C--cEEEEEcCCCCCCCCCcceeeeecccccceEEEEE
Q 016974 90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD-S--VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY 166 (379)
Q Consensus 90 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d-~--~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 166 (379)
.+.++|.. +.....+......+....|+|||+.|+..+.+ + .+.+||+.... ....... .+......|
T Consensus 199 ~l~i~d~d-G~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~-----~~~lt~~---~g~~~~~~w 269 (448)
T PRK04792 199 QLMIADYD-GYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV-----REKVTSF---PGINGAPRF 269 (448)
T ss_pred EEEEEeCC-CCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCC-----eEEecCC---CCCcCCeeE
Confidence 56666754 33334455555677888999999998877543 2 47777775421 1111112 223345789
Q ss_pred ecCCCceEEEeeCCCe--EEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEE--EEccCCccc
Q 016974 167 VPDEDTHLITSSGDQT--CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARL--WDTRVASRA 242 (379)
Q Consensus 167 ~~~~~~~l~s~~~d~~--i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~v--wd~~~~~~~ 242 (379)
+|++..++++.+.++. |.++|+.++..... ..+........|+|.+..++++...++...+ +|+... +
T Consensus 270 SPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~l------t~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g-~- 341 (448)
T PRK04792 270 SPDGKKLALVLSKDGQPEIYVVDIATKALTRI------TRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG-K- 341 (448)
T ss_pred CCCCCEEEEEEeCCCCeEEEEEECCCCCeEEC------ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC-C-
Confidence 9987655556666775 77778877653322 1233344567788755555555555555444 455433 2
Q ss_pred eEEEecccCCeeEEEEccCCCEEEEeeC-CC--eEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEec-
Q 016974 243 VRTFHGHEGDVNTVKFFPDGNRFGTGSD-DG--TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN- 318 (379)
Q Consensus 243 ~~~~~~h~~~v~~v~~sp~g~~l~s~s~-D~--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~d- 318 (379)
...+..+.......+|+|||++|+..+. ++ .|.++|+.++.... +... .. .....|+|+|++|+....+
T Consensus 342 ~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~-----d~~ps~spdG~~I~~~~~~~ 414 (448)
T PRK04792 342 VSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RL-----DESPSVAPNGTMVIYSTTYQ 414 (448)
T ss_pred EEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CC-----CCCceECCCCCEEEEEEecC
Confidence 2222212223445789999999877665 33 45567887765432 2111 11 1234799999988776543
Q ss_pred C--cEEEEeCCCceEEEecccccCCccCceeEEEECC
Q 016974 319 G--DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 353 (379)
Q Consensus 319 g--~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 353 (379)
| .+++++.. ++....+ ..+.+.+...+|+|
T Consensus 415 g~~~l~~~~~~-G~~~~~l----~~~~g~~~~p~Wsp 446 (448)
T PRK04792 415 GKQVLAAVSID-GRFKARL----PAGQGEVKSPAWSP 446 (448)
T ss_pred CceEEEEEECC-CCceEEC----cCCCCCcCCCccCC
Confidence 3 37777763 4444333 23445567778887
No 242
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.45 E-value=1.4e-11 Score=102.28 Aligned_cols=205 Identities=16% Similarity=0.217 Sum_probs=146.6
Q ss_pred cEEEEEeeC---CCC-eEEEEcCCCcEEEEECCCCceeeEeecC------CcceEEEEECCCCCEEEEeeCCCcEEEEEc
Q 016974 69 KVYSLDWTS---ERN-RIVSASQDGRLIVWNALTSQKTHAIKLP------CAWVMTCAFSPTGQSVACGGLDSVCSIFNL 138 (379)
Q Consensus 69 ~v~~~~~~~---~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~------~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~ 138 (379)
.++.+.|.. +|. .|+-+-.+|.|.++..........++.- .....++.|++.+..+++.-.+|.+.+-+.
T Consensus 71 ~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~ 150 (339)
T KOG0280|consen 71 TEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYE 150 (339)
T ss_pred ccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEec
Confidence 366677763 344 4566778899999876544444443321 112456789999999999988998885543
Q ss_pred CCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCC
Q 016974 139 NSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN 218 (379)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 218 (379)
... .+......+.|..+..-+.|+..+++.+.+|+.|+.+.-||++.+. ...+ .....|...|.++.-+|+.
T Consensus 151 t~~-----~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~i~--~n~kvH~~GV~SI~ss~~~ 222 (339)
T KOG0280|consen 151 TEM-----VLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TFIW--HNSKVHTSGVVSIYSSPPK 222 (339)
T ss_pred cee-----eeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-ceee--ecceeeecceEEEecCCCC
Confidence 321 1222335678998888899988888889999999999999998433 1111 2235789999999999999
Q ss_pred CcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccC-CCEEEEeeCCCeEEEEECCCC
Q 016974 219 SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD-GNRFGTGSDDGTCRLFDIRTG 282 (379)
Q Consensus 219 ~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~-g~~l~s~s~D~~i~iwd~~~~ 282 (379)
+.+++||+.|-.|++||.|+..+++..-. -.+.|+.+..+|. ...+..+++-+-.+|-++..+
T Consensus 223 ~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~ 286 (339)
T KOG0280|consen 223 PTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDK 286 (339)
T ss_pred CceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEeccc
Confidence 99999999999999999998777765432 3478999999994 334444555556788877654
No 243
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=1.4e-10 Score=108.97 Aligned_cols=235 Identities=13% Similarity=0.099 Sum_probs=139.5
Q ss_pred cEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCC---CcEEEEEcCCCCCCCCCcceeeeecccccceEEEEE
Q 016974 90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD---SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY 166 (379)
Q Consensus 90 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 166 (379)
.|.++|.. +.....+..+...+...+|+|+|+.|+..+.+ ..+.+|++.... . ..+....+.+....|
T Consensus 180 ~l~~~d~~-g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~-----~---~~l~~~~g~~~~~~~ 250 (430)
T PRK00178 180 TLQRSDYD-GARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR-----R---EQITNFEGLNGAPAW 250 (430)
T ss_pred EEEEECCC-CCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC-----E---EEccCCCCCcCCeEE
Confidence 47777765 44445555566678889999999999887654 357788876432 1 112222333456789
Q ss_pred ecCCCceEEEeeCCC--eEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCc--EEEEEccCCccc
Q 016974 167 VPDEDTHLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST--ARLWDTRVASRA 242 (379)
Q Consensus 167 ~~~~~~~l~s~~~d~--~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~--i~vwd~~~~~~~ 242 (379)
+|++...+++.+.++ .|.+||+.++...... .+........|+|.+..++++...++. |.++|+....
T Consensus 251 SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt------~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~-- 322 (430)
T PRK00178 251 SPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVT------NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR-- 322 (430)
T ss_pred CCCCCEEEEEEccCCCceEEEEECCCCCeEEcc------cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC--
Confidence 998765555665555 5778898877543321 223334556788755555555545544 5566665432
Q ss_pred eEEEecccCCeeEEEEccCCCEEEEeeCC-C--eEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEec-
Q 016974 243 VRTFHGHEGDVNTVKFFPDGNRFGTGSDD-G--TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN- 318 (379)
Q Consensus 243 ~~~~~~h~~~v~~v~~sp~g~~l~s~s~D-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~d- 318 (379)
...+...........|+|||++|+..+.+ + .|.++|+.++..... ... .. .....|+|+|++|+..+.+
T Consensus 323 ~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~l-t~~-~~-----~~~p~~spdg~~i~~~~~~~ 395 (430)
T PRK00178 323 AERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRIL-TDT-SL-----DESPSVAPNGTMLIYATRQQ 395 (430)
T ss_pred EEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEc-cCC-CC-----CCCceECCCCCEEEEEEecC
Confidence 22222112233457899999999877643 3 588899988764322 111 11 1245899999998876644
Q ss_pred C--cEEEEeCCCceEEEecccccCCccCceeEEEECC
Q 016974 319 G--DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 353 (379)
Q Consensus 319 g--~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 353 (379)
| .|++++.... ....+ ..+.+.+...+|+|
T Consensus 396 g~~~l~~~~~~g~-~~~~l----~~~~g~~~~p~ws~ 427 (430)
T PRK00178 396 GRGVLMLVSINGR-VRLPL----PTAQGEVREPSWSP 427 (430)
T ss_pred CceEEEEEECCCC-ceEEC----cCCCCCcCCCccCC
Confidence 2 4777776433 22233 22344566667776
No 244
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.44 E-value=3.7e-13 Score=120.04 Aligned_cols=94 Identities=21% Similarity=0.400 Sum_probs=81.2
Q ss_pred cccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCC
Q 016974 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDG 146 (379)
Q Consensus 67 ~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~ 146 (379)
.+.|+..+|+|||++||+.|.||.+||+|..+.+.+..++.-.+...|++|||||+||++||.|..+.||.+...
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er----- 364 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER----- 364 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccc-----
Confidence 347899999999999999999999999999887777777776788999999999999999999999999998642
Q ss_pred CcceeeeecccccceEEEEEe
Q 016974 147 NLPVSRMLSGHKGYVSCCQYV 167 (379)
Q Consensus 147 ~~~~~~~~~~h~~~v~~~~~~ 167 (379)
.+...-.||+..|..++|.
T Consensus 365 --RVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 365 --RVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred --eEEEeccccccceeeEeec
Confidence 2444456899999999987
No 245
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=2.1e-11 Score=109.90 Aligned_cols=240 Identities=19% Similarity=0.246 Sum_probs=150.2
Q ss_pred cceEEEEECCCCCEE-EEeeCCCcEEEEEcCCCCCCCCCcceeeeeccccc-ceEEEEEecCCCceEEEeeCCCeEEEee
Q 016974 110 AWVMTCAFSPTGQSV-ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG-YVSCCQYVPDEDTHLITSSGDQTCVLWD 187 (379)
Q Consensus 110 ~~v~~~~~s~~g~~l-~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~d~~i~~wd 187 (379)
..-+.+..+|||+|+ |+|.+...|++||+.+-. ..+.-|.+ .+.......++-..++---.|++|.+..
T Consensus 52 ~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS---------LKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHa 122 (703)
T KOG2321|consen 52 TASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS---------LKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHA 122 (703)
T ss_pred cccceeEecCCCcEEEEecccCCceEEEEcccce---------eeeeecccccceeEEEeccchhhheEeecCceeeehh
Confidence 345678899999975 667789999999997521 12222322 2322222223222244445667665543
Q ss_pred cCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEE
Q 016974 188 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGT 267 (379)
Q Consensus 188 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s 267 (379)
.. |..-.. --...-.++.++.....+++.|+. ..|.-+++..+ +-+..+.-..+.++++..++-..+|++
T Consensus 123 k~-G~hy~~-------RIP~~GRDm~y~~~scDly~~gsg-~evYRlNLEqG-rfL~P~~~~~~~lN~v~in~~hgLla~ 192 (703)
T KOG2321|consen 123 KY-GRHYRT-------RIPKFGRDMKYHKPSCDLYLVGSG-SEVYRLNLEQG-RFLNPFETDSGELNVVSINEEHGLLAC 192 (703)
T ss_pred hc-Ceeeee-------ecCcCCccccccCCCccEEEeecC-cceEEEEcccc-ccccccccccccceeeeecCccceEEe
Confidence 21 110000 000112344455445555554443 34555566533 445555556688999999999999999
Q ss_pred eeCCCeEEEEECCCCceeEEEeecc------CCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCC
Q 016974 268 GSDDGTCRLFDIRTGHQLQVYYQQH------GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNS 341 (379)
Q Consensus 268 ~s~D~~i~iwd~~~~~~~~~~~~~~------~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~ 341 (379)
|+.||.+.+||.+....+..+.... +.+....|+++.|+.+|-.+++|.++|.++|||+.+.++...-. .+
T Consensus 193 Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kd---h~ 269 (703)
T KOG2321|consen 193 GTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKD---HG 269 (703)
T ss_pred cccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecc---cC
Confidence 9999999999999876554443221 22234459999999999999999999999999998877654421 23
Q ss_pred ccCceeEEEECCC--CCeEEEeeCCCcEEEEec
Q 016974 342 HEGRITCLGLSAD--GSALCTGSWDTNLKIWAF 372 (379)
Q Consensus 342 h~~~v~~~~~s~d--~~~l~s~s~D~~i~vw~~ 372 (379)
..-+|..+.|.+. ++.|+|. ....++||+-
T Consensus 270 ~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~ 301 (703)
T KOG2321|consen 270 YELPIKKLDWQDTDQQNKVVSM-DKRILKIWDE 301 (703)
T ss_pred CccceeeecccccCCCceEEec-chHHhhhccc
Confidence 4568899999765 3444433 3357899974
No 246
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.43 E-value=2.2e-13 Score=119.40 Aligned_cols=193 Identities=17% Similarity=0.281 Sum_probs=151.2
Q ss_pred EEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCcc
Q 016974 162 SCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR 241 (379)
Q Consensus 162 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~ 241 (379)
+.+.|..+ +.+|+.|+.-|.+..+|..++.....+. -...|.++.|.. +.++|| ..+.+.+.|||-. +.
T Consensus 133 Y~~~ytrn-GrhlllgGrKGHlAa~Dw~t~~L~~Ei~------v~Etv~Dv~~LH-neq~~A-VAQK~y~yvYD~~--Gt 201 (545)
T KOG1272|consen 133 YHLDYTRN-GRHLLLGGRKGHLAAFDWVTKKLHFEIN------VMETVRDVTFLH-NEQFFA-VAQKKYVYVYDNN--GT 201 (545)
T ss_pred eeeeecCC-ccEEEecCCccceeeeecccceeeeeee------hhhhhhhhhhhc-chHHHH-hhhhceEEEecCC--Cc
Confidence 34566654 5789999999999999998876554432 234567777775 444554 5567789999854 34
Q ss_pred ceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcE
Q 016974 242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDC 321 (379)
Q Consensus 242 ~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i 321 (379)
.++.+..| ..|..+.|.|..-+|+++++.|-++--|+.+|+.+..+... .+.+..++-+|-.-.+-.|..+|+|
T Consensus 202 ElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~-----~G~~~vm~qNP~NaVih~GhsnGtV 275 (545)
T KOG1272|consen 202 ELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTG-----AGRTDVMKQNPYNAVIHLGHSNGTV 275 (545)
T ss_pred EEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHcc-----CCccchhhcCCccceEEEcCCCceE
Confidence 56666655 57999999999989999999999999999999887655432 2346677888988899999999999
Q ss_pred EEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecCce
Q 016974 322 YVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGY 375 (379)
Q Consensus 322 ~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~~ 375 (379)
.+|.-........+ -.|.++|.+|++.++|.++||++.|..|+|||+..+
T Consensus 276 SlWSP~skePLvKi----LcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~ 325 (545)
T KOG1272|consen 276 SLWSPNSKEPLVKI----LCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNF 325 (545)
T ss_pred EecCCCCcchHHHH----HhcCCCcceEEECCCCcEEeecccccceeEeeeccc
Confidence 99987665555444 469999999999999999999999999999998873
No 247
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.41 E-value=4.5e-12 Score=117.17 Aligned_cols=289 Identities=18% Similarity=0.213 Sum_probs=187.1
Q ss_pred cccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCce-eeEee-cCCcceEEEEECCCC---CEEEEeeCCCcEEEEEcCCC
Q 016974 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQK-THAIK-LPCAWVMTCAFSPTG---QSVACGGLDSVCSIFNLNSP 141 (379)
Q Consensus 67 ~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~-~~~~~v~~~~~s~~g---~~l~~~~~d~~i~iw~~~~~ 141 (379)
.+.+.++..+|-|+-++.++.-| +.+-|+...-. ..-+. ...-.|-...|+|.. ..+++.+.. ...+|++..+
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~q-kaiiwnlA~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQ-KAIIWNLAKS 101 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcc-hhhhhhhhcC
Confidence 34678889999999999988877 45556543322 21111 122335556677754 234544444 4458998754
Q ss_pred CCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcE
Q 016974 142 TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRM 221 (379)
Q Consensus 142 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 221 (379)
. ...+...+-||..+|+.+-|.|.....+++++.|-.+..||+++.......- ..-......+.|+-.++..
T Consensus 102 s----~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~----~~w~s~asqVkwnyk~p~v 173 (1081)
T KOG0309|consen 102 S----SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYST----SSWRSAASQVKWNYKDPNV 173 (1081)
T ss_pred C----ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeee----ecccccCceeeecccCcch
Confidence 3 2235566789999999999999988899999999999999998864322211 1122334567777666666
Q ss_pred EEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEcc-CCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCe
Q 016974 222 FVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV 300 (379)
Q Consensus 222 l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp-~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v 300 (379)
+++ +..+.|++||.+....++..+++|...|+.+.|+. -...+.++++|+++++||-.+...-... ......+|
T Consensus 174 las-shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~----~vtt~~pi 248 (1081)
T KOG0309|consen 174 LAS-SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKR----TVTTNFPI 248 (1081)
T ss_pred hhh-ccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccce----eccccCcc
Confidence 654 44567999999999899999999999999999986 3456889999999999997654321111 11122345
Q ss_pred EEEEEccCCCEEEEEE--ecCcEEE---------EeCCCc-eEEEecccccCCccCceeEEEECCC----------CCeE
Q 016974 301 TSIAFSISGRLLFAGY--SNGDCYV---------WDTLLA-KVVLNLGSLQNSHEGRITCLGLSAD----------GSAL 358 (379)
Q Consensus 301 ~~~~fs~~g~~l~sg~--~dg~i~i---------wd~~~~-~~~~~~~~~~~~h~~~v~~~~~s~d----------~~~l 358 (379)
..-+|-|=|+-...-- .+..+.+ |++.+. ..+..+ .+|.+.|...-|-.. .-.|
T Consensus 249 w~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F----~GH~D~V~eFlWR~r~e~~~d~d~rdfQL 324 (1081)
T KOG0309|consen 249 WRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTF----VGHDDVVLEFLWRKRKECDGDYDSRDFQL 324 (1081)
T ss_pred eeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeee----cCcchHHHHHhhhhcccccCCCCccceeE
Confidence 5555666544222211 1112333 332221 223333 688887765555322 2369
Q ss_pred EEeeCCCcEEEEecCc
Q 016974 359 CTGSWDTNLKIWAFGG 374 (379)
Q Consensus 359 ~s~s~D~~i~vw~~~~ 374 (379)
++-|.|.++|+|.++.
T Consensus 325 VTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 325 VTWSKDQTLRLWPIDS 340 (1081)
T ss_pred EEeecCCceEeeeccH
Confidence 9999999999999876
No 248
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.40 E-value=2e-10 Score=107.48 Aligned_cols=201 Identities=18% Similarity=0.164 Sum_probs=128.9
Q ss_pred eecccccceEEEEEecCCCceEEEeeCC---CeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCC
Q 016974 153 MLSGHKGYVSCCQYVPDEDTHLITSSGD---QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS 229 (379)
Q Consensus 153 ~~~~h~~~v~~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~ 229 (379)
.+..+...+....|+|++. .|+.++.+ ..|.+||+.++...... .+...+.+..|+|.+..++++.+.++
T Consensus 184 ~l~~~~~~~~~p~~Spdg~-~la~~~~~~~~~~i~v~d~~~g~~~~~~------~~~~~~~~~~~spDg~~l~~~~~~~~ 256 (417)
T TIGR02800 184 TITRSREPILSPAWSPDGQ-KLAYVSFESGKPEIYVQDLATGQREKVA------SFPGMNGAPAFSPDGSKLAVSLSKDG 256 (417)
T ss_pred EeecCCCceecccCCCCCC-EEEEEEcCCCCcEEEEEECCCCCEEEee------cCCCCccceEECCCCCEEEEEECCCC
Confidence 3445566688889999875 45554432 57999999887543322 23334556788875555556666555
Q ss_pred --cEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCC-C--eEEEEECCCCceeEEEeeccCCCCCCCeEEEE
Q 016974 230 --TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD-G--TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIA 304 (379)
Q Consensus 230 --~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 304 (379)
.|.+||+... ....+..+........|+|||+.|+..+.. + .|.++|+.+++....... ........
T Consensus 257 ~~~i~~~d~~~~--~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~------~~~~~~~~ 328 (417)
T TIGR02800 257 NPDIYVMDLDGK--QLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFR------GGYNASPS 328 (417)
T ss_pred CccEEEEECCCC--CEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC------CCCccCeE
Confidence 4778887643 233444455555678999999998876643 3 578888877654322211 12356788
Q ss_pred EccCCCEEEEEEecC---cEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCC---cEEEEecCc
Q 016974 305 FSISGRLLFAGYSNG---DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT---NLKIWAFGG 374 (379)
Q Consensus 305 fs~~g~~l~sg~~dg---~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~---~i~vw~~~~ 374 (379)
|+|+|++|+.++.++ .|++||..++.... +. .. ......+|+|||++|+.++.++ .+++.+.++
T Consensus 329 ~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~----~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g 398 (417)
T TIGR02800 329 WSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LT----DT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDG 398 (417)
T ss_pred ECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-cc----CC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCC
Confidence 999999999887765 78899987654322 21 11 1234568999999998877765 355555554
No 249
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.40 E-value=1.1e-11 Score=118.88 Aligned_cols=195 Identities=18% Similarity=0.246 Sum_probs=150.0
Q ss_pred EEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCC----cceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCC
Q 016974 70 VYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPC----AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD 145 (379)
Q Consensus 70 v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~----~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~ 145 (379)
|....+.-+.+.++.+..+..+-+||...+.....+.... .....+.++++.-++++|+.-+.+.+|+.....
T Consensus 90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn--- 166 (967)
T KOG0974|consen 90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN--- 166 (967)
T ss_pred ccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC---
Confidence 4444445566788888999999999987655443332221 122334577888899999999999999987221
Q ss_pred CCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEe
Q 016974 146 GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG 225 (379)
Q Consensus 146 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg 225 (379)
.+. .+.||.+.+..+.|+.++ .++++.|.|+++++|++.+..... ....+|++.+..+.+++. .++|+
T Consensus 167 --~p~--~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~~~~~----~~~fgHsaRvw~~~~~~n---~i~t~ 234 (967)
T KOG0974|consen 167 --KPI--RLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSREVLG----CTGFGHSARVWACCFLPN---RIITV 234 (967)
T ss_pred --Ccc--eecccCCceEEEEEccCC-cEEEEEecCcceeeeecccccccC----cccccccceeEEEEeccc---eeEEe
Confidence 122 578999999999999875 689999999999999998865433 112589999999999974 89999
Q ss_pred cCCCcEEEEEccCCccceEEEecccC-CeeEEEEccCCCEEEEeeCCCeEEEEECCC
Q 016974 226 SCDSTARLWDTRVASRAVRTFHGHEG-DVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 281 (379)
Q Consensus 226 ~~d~~i~vwd~~~~~~~~~~~~~h~~-~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~ 281 (379)
+.|-+.++|+... ..+..+.+|.+ .|+.++..++...++|++.|+.+++||+..
T Consensus 235 gedctcrvW~~~~--~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 235 GEDCTCRVWGVNG--TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ccceEEEEEeccc--ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 9999999997652 33446667754 699999999999999999999999999753
No 250
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.40 E-value=8.5e-11 Score=106.47 Aligned_cols=190 Identities=17% Similarity=0.235 Sum_probs=141.7
Q ss_pred CceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEE------e-------------CCCCcEEEEecCCCcE
Q 016974 171 DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSI------S-------------GSNSRMFVSGSCDSTA 231 (379)
Q Consensus 171 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~------~-------------~~~~~~l~sg~~d~~i 231 (379)
..+++....||.+++||...+..-..+..... -++...+..| + ..+..+++-|...|.|
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~--~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIAS--LSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred hheEeecCCCCeEEEEEccCceeeeeeccchh--ccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 45788899999999999887654433321111 0111222222 1 1234578889999999
Q ss_pred EEEEccCCccceEEE--ecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCC
Q 016974 232 RLWDTRVASRAVRTF--HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG 309 (379)
Q Consensus 232 ~vwd~~~~~~~~~~~--~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g 309 (379)
.++++... +....+ .+|.+.|+++.++.+-..|.|++.|+.+..|+...+..+..+... ...+.+++++|||
T Consensus 83 ~~ys~~~g-~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~-----~~~~~sl~is~D~ 156 (541)
T KOG4547|consen 83 LLYSVAGG-EITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQ-----KPLVSSLCISPDG 156 (541)
T ss_pred EEEEecCC-eEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccC-----CCccceEEEcCCC
Confidence 99998754 333333 479999999999998889999999999999999888776666432 2358899999999
Q ss_pred CEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCC-----CCe-EEEeeCCCcEEEEecCc
Q 016974 310 RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD-----GSA-LCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 310 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d-----~~~-l~s~s~D~~i~vw~~~~ 374 (379)
+.+++++ +.|.+||..+.+.+.++ .+|.++|.+++|..+ |.+ |.+...+.-+.+|-...
T Consensus 157 ~~l~~as--~~ik~~~~~~kevv~~f----tgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 157 KILLTAS--RQIKVLDIETKEVVITF----TGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CEEEecc--ceEEEEEccCceEEEEe----cCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9998775 67999999999988887 789999999999876 554 44566677888897665
No 251
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.39 E-value=3.2e-12 Score=128.16 Aligned_cols=201 Identities=17% Similarity=0.251 Sum_probs=149.0
Q ss_pred cccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeec-CCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCC
Q 016974 65 GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKL-PCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTD 143 (379)
Q Consensus 65 gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~ 143 (379)
.|-..|.++.=+|-..+.+||+.||.|++|....++.+...+. ....|..+.|+.+|..+..+..||.+.+|...+.
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk-- 2283 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPK-- 2283 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCc--
Confidence 3445677787778778899999999999999999988877653 3377888999999999999999999999998732
Q ss_pred CCCCcceeeeecccccceEEEEEecCCCceEEEee---CCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCc
Q 016974 144 KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS---GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR 220 (379)
Q Consensus 144 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~---~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 220 (379)
.....+-|........|.. ..+++++ .++.+.+||..-......+ ...|...++.+++-| ..+
T Consensus 2284 ------~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v----~~~H~~gaT~l~~~P-~~q 2349 (2439)
T KOG1064|consen 2284 ------PYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLV----HTCHDGGATVLAYAP-KHQ 2349 (2439)
T ss_pred ------ceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCccccee----eeecCCCceEEEEcC-cce
Confidence 1122345766677777765 3455543 4788999996433222222 157888999999987 677
Q ss_pred EEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeecc
Q 016974 221 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 292 (379)
Q Consensus 221 ~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~ 292 (379)
+|++|+.+|.|++||++- .+..+.++. ++ ...+|++|+..|.|+||++..-..+..+..++
T Consensus 2350 llisggr~G~v~l~D~rq-rql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2350 LLISGGRKGEVCLFDIRQ-RQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEH 2410 (2439)
T ss_pred EEEecCCcCcEEEeehHH-HHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCchhh
Confidence 999999999999999973 344333332 33 56789999999999999998765555554333
No 252
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.36 E-value=2.9e-10 Score=103.10 Aligned_cols=212 Identities=16% Similarity=0.215 Sum_probs=148.9
Q ss_pred CCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecc
Q 016974 77 SERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSG 156 (379)
Q Consensus 77 ~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~ 156 (379)
|...++|....||.+||||..+++.-..+ .|. +..+..++...|.+.....+.. ... +..
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~------------~p~----~~~s~t~~~~~w~L~~~~s~~k---~~~-~~~ 62 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEF------------API----ASLSGTCTYTKWGLSADYSPMK---WLS-LEK 62 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeee------------ccc----hhccCcceeEEEEEEeccchHH---HHh-HHH
Confidence 45678999999999999999887644332 221 2223334555666543211100 000 000
Q ss_pred cccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEc
Q 016974 157 HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT 236 (379)
Q Consensus 157 h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~ 236 (379)
.. .-+ .+...++-|...|.|-+|+...+.....+.. ..|.+.|.++.++. +-..|.|++.|+.+-.|+.
T Consensus 63 ----~~--~~s-~~t~~lvlgt~~g~v~~ys~~~g~it~~~st---~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~ 131 (541)
T KOG4547|consen 63 ----AK--KAS-LDTSMLVLGTPQGSVLLYSVAGGEITAKLST---DKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILE 131 (541)
T ss_pred ----Hh--hcc-CCceEEEeecCCccEEEEEecCCeEEEEEec---CCCCCcceeeeccc-ccCceEecCCceeEEEEec
Confidence 00 001 1234577888899999999988876665542 46788888887764 5567899999999999998
Q ss_pred cCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccC-----CCE
Q 016974 237 RVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS-----GRL 311 (379)
Q Consensus 237 ~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~-----g~~ 311 (379)
... +.++.+.+-...+.+++.+|||..++++| +.|++||+++++.+..|.. |.++|++++|-.+ |.+
T Consensus 132 ~~~-~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftg-----h~s~v~t~~f~~~~~g~~G~~ 203 (541)
T KOG4547|consen 132 KEK-VIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTG-----HGSPVRTLSFTTLIDGIIGKY 203 (541)
T ss_pred ccc-eeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecC-----CCcceEEEEEEEeccccccce
Confidence 754 67778888888899999999999999887 5899999999988877633 4567999999888 788
Q ss_pred EEEEE-ecCcEEEEeCC
Q 016974 312 LFAGY-SNGDCYVWDTL 327 (379)
Q Consensus 312 l~sg~-~dg~i~iwd~~ 327 (379)
+.++. .+.-+.+|-+.
T Consensus 204 vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 204 VLSSAAAERGITVWVVE 220 (541)
T ss_pred eeeccccccceeEEEEE
Confidence 77764 45567788643
No 253
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.34 E-value=3e-11 Score=98.73 Aligned_cols=242 Identities=16% Similarity=0.197 Sum_probs=142.2
Q ss_pred EEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEee--cCCcceEEEE----------ECCCCCEEEEeeCCCcEEEEE
Q 016974 70 VYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK--LPCAWVMTCA----------FSPTGQSVACGGLDSVCSIFN 137 (379)
Q Consensus 70 v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~--~~~~~v~~~~----------~s~~g~~l~~~~~d~~i~iw~ 137 (379)
|..+.++.+ -.|+++..++.+.....-++.+..... ...+...+.+ -+-.+.-+++++.|+.+.+.+
T Consensus 39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 666666654 367778788777766654443332211 1111122222 233467799999999999998
Q ss_pred cCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEe-----eCCCeEEEeecCCCeeEEEecCccccCCccCeEEE
Q 016974 138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITS-----SGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV 212 (379)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~-----~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~ 212 (379)
.+.....+.+.+. .|.+.- +..+.... +.+.++ ..-+..+.|++..... +... ......|.++
T Consensus 118 ~~~~~~~~~~i~~-----~~~~~a-s~~~~~~~-~~i~s~~~g~~n~~d~~~a~~~~p~~t---~~~~--~~~~~~v~~l 185 (319)
T KOG4714|consen 118 TDKDLALMSRIPS-----IHSGSA-SRKICRHG-NSILSGGCGNWNAQDNFYANTLDPIKT---LIPS--KKALDAVTAL 185 (319)
T ss_pred chHHHhhhhhccc-----cccccc-ccceeecc-cEEecCCcceEeeccceeeeccccccc---cccc--ccccccchhh
Confidence 7642211111111 122111 11122211 222222 1223455566543211 1111 1122348888
Q ss_pred EEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEcc-CCCEEEEeeCCCeEEEEECCCCceeEEEeec
Q 016974 213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ 291 (379)
Q Consensus 213 ~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp-~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~ 291 (379)
+-+|..++++++|+.||.+-+||.++...+...+.+|+.+|+.|.|+| ++..|.++++||.+..||-.+ ..+..-.+.
T Consensus 186 ~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~-~~l~i~~~~ 264 (319)
T KOG4714|consen 186 CSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST-TFLSISNQA 264 (319)
T ss_pred hCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC-ceEEecCcc
Confidence 889888899999999999999999977666677889999999999999 688899999999999999764 222211110
Q ss_pred cCC---------CC--------CCCeEEE-EEccCCCEEEEEEecCcEEEEe
Q 016974 292 HGE---------NE--------IPHVTSI-AFSISGRLLFAGYSNGDCYVWD 325 (379)
Q Consensus 292 ~~~---------~~--------~~~v~~~-~fs~~g~~l~sg~~dg~i~iwd 325 (379)
... +. .....++ .|+--|..|++|++-+.|++++
T Consensus 265 s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 265 SVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred ccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 000 00 0001111 3566788899998888888875
No 254
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=1.9e-09 Score=101.27 Aligned_cols=200 Identities=17% Similarity=0.142 Sum_probs=125.1
Q ss_pred ecccccceEEEEEecCCCceEEEeeCC---CeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCC-
Q 016974 154 LSGHKGYVSCCQYVPDEDTHLITSSGD---QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS- 229 (379)
Q Consensus 154 ~~~h~~~v~~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~- 229 (379)
+..+...+....|+|++. .|+..+.+ ..|.+||+.++....... ....+....|+|.+..++++.+.++
T Consensus 194 l~~~~~~~~~p~wSpDG~-~la~~s~~~~~~~l~~~~l~~g~~~~l~~------~~g~~~~~~~SpDG~~la~~~~~~g~ 266 (430)
T PRK00178 194 LLQSREPILSPRWSPDGK-RIAYVSFEQKRPRIFVQNLDTGRREQITN------FEGLNGAPAWSPDGSKLAFVLSKDGN 266 (430)
T ss_pred EecCCCceeeeeECCCCC-EEEEEEcCCCCCEEEEEECCCCCEEEccC------CCCCcCCeEECCCCCEEEEEEccCCC
Confidence 445666788899999875 45544432 368889998875433221 1122345778875555555666565
Q ss_pred -cEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeC-CC--eEEEEECCCCceeEEEeeccCCCCCCCeEEEEE
Q 016974 230 -TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DG--TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF 305 (379)
Q Consensus 230 -~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~-D~--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~f 305 (379)
.|.+||+... ....+..+........|+|||+.|+..+. ++ .|.++|+.+++....... + .......|
T Consensus 267 ~~Iy~~d~~~~--~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~--~----~~~~~~~~ 338 (430)
T PRK00178 267 PEIYVMDLASR--QLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFV--G----NYNARPRL 338 (430)
T ss_pred ceEEEEECCCC--CeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC--C----CCccceEE
Confidence 5777787643 23345555556677899999998876664 33 577788877764333211 1 11235689
Q ss_pred ccCCCEEEEEEec-C--cEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCC-C--cEEEEecCc
Q 016974 306 SISGRLLFAGYSN-G--DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD-T--NLKIWAFGG 374 (379)
Q Consensus 306 s~~g~~l~sg~~d-g--~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D-~--~i~vw~~~~ 374 (379)
+|+|++|+....+ + .|++||+.+++... +.. .. ......|+|||+.|+..+.+ + .|+++++.+
T Consensus 339 Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~--~~---~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 339 SADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD--TS---LDESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred CCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccC--CC---CCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 9999999876643 3 58889987765432 211 11 12245799999999877654 2 466666655
No 255
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=2.5e-09 Score=99.61 Aligned_cols=240 Identities=14% Similarity=0.124 Sum_probs=135.9
Q ss_pred cEEEEECCCCceeeEeecCCcceEEEEECCCCCE--EE-EeeCCC--cEEEEEcCCCCCCCCCcceeeeecccccceEEE
Q 016974 90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS--VA-CGGLDS--VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCC 164 (379)
Q Consensus 90 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~--l~-~~~~d~--~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 164 (379)
.|.+.|.. |.....+........+-+|+|||+. ++ +...++ .|.+.++.... . +.+....+.....
T Consensus 166 ~l~~~d~d-G~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~-----~---~~lt~~~g~~~~p 236 (428)
T PRK01029 166 ELWSVDYD-GQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPA-----G---KKILALQGNQLMP 236 (428)
T ss_pred eEEEEcCC-CCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCC-----c---eEeecCCCCccce
Confidence 56666654 3334445444455567789999975 32 333343 45555665321 1 1122233344567
Q ss_pred EEecCCCceEEEeeC----CCeEEEeecCCC---eeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEcc
Q 016974 165 QYVPDEDTHLITSSG----DQTCVLWDITTG---LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR 237 (379)
Q Consensus 165 ~~~~~~~~~l~s~~~----d~~i~~wd~~~~---~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~ 237 (379)
+|+|++..++++... +..+.+|++..+ ...... ..+........|+|.+..++++...+|...+|.+.
T Consensus 237 ~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt-----~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~ 311 (428)
T PRK01029 237 TFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLL-----NEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQ 311 (428)
T ss_pred EECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEee-----cCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEE
Confidence 899997654444433 334455776542 211121 11112234567887444455555567766666543
Q ss_pred C--CccceEEEecccCCeeEEEEccCCCEEEEeeCC---CeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEE
Q 016974 238 V--ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD---GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL 312 (379)
Q Consensus 238 ~--~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D---~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l 312 (379)
. .......+..+...+....|||||+.|+..+.+ ..|.+||+.+++....... ...+....|+|||++|
T Consensus 312 ~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~------~~~~~~p~wSpDG~~L 385 (428)
T PRK01029 312 IDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS------PENKESPSWAIDSLHL 385 (428)
T ss_pred CcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC------CCCccceEECCCCCEE
Confidence 2 112234444455567789999999999877643 3699999988765433211 1135678999999988
Q ss_pred EEEEe---cCcEEEEeCCCceEEEecccccCCccCceeEEEECCC
Q 016974 313 FAGYS---NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD 354 (379)
Q Consensus 313 ~sg~~---dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d 354 (379)
+.... ...|+++|+..++..... ...+.+...+|+|-
T Consensus 386 ~f~~~~~g~~~L~~vdl~~g~~~~Lt-----~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 386 VYSAGNSNESELYLISLITKKTRKIV-----IGSGEKRFPSWGAF 425 (428)
T ss_pred EEEECCCCCceEEEEECCCCCEEEee-----cCCCcccCceecCC
Confidence 75433 346889998766543322 12334556778774
No 256
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.30 E-value=5.3e-09 Score=93.42 Aligned_cols=278 Identities=18% Similarity=0.190 Sum_probs=170.4
Q ss_pred cEEEEEeeCCCCeEEEEcCCC---------------cEEEEECCCCceeeEeecCCcc--eE-EEEECCCCCEEEEeeCC
Q 016974 69 KVYSLDWTSERNRIVSASQDG---------------RLIVWNALTSQKTHAIKLPCAW--VM-TCAFSPTGQSVACGGLD 130 (379)
Q Consensus 69 ~v~~~~~~~~~~~l~s~s~D~---------------~v~iwd~~~~~~~~~~~~~~~~--v~-~~~~s~~g~~l~~~~~d 130 (379)
.|..+.|+|.+++|.|=+..+ .+.+||..++..+..+...... .. -+.|+-+.+++|-...
T Consensus 73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~- 151 (561)
T COG5354 73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG- 151 (561)
T ss_pred CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhcc-
Confidence 488999999999999865433 4999999999988887655433 23 5678888888776633
Q ss_pred CcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCC-CceEE-----EeeCCCeEEEeecCCCeeEEEecCccccC
Q 016974 131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLI-----TSSGDQTCVLWDITTGLRTSVFGGEFQSG 204 (379)
Q Consensus 131 ~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~-----s~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 204 (379)
..+.|+++.... ... +. ..+. ...|....|+|.+ ...|+ ..+.++++++|.+..+..+.....
T Consensus 152 ~sl~i~e~t~n~-~~~--p~-~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l----- 220 (561)
T COG5354 152 SSLYIHEITDNI-EEH--PF-KNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL----- 220 (561)
T ss_pred CeEEEEecCCcc-ccC--ch-hhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeee-----
Confidence 457889873221 111 11 0111 1234555666642 22233 256788899998875433221100
Q ss_pred CccCeEEEEEeCCCCcEEEEe--------c--CCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEee--CCC
Q 016974 205 HTADVLSVSISGSNSRMFVSG--------S--CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS--DDG 272 (379)
Q Consensus 205 h~~~v~~~~~~~~~~~~l~sg--------~--~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s--~D~ 272 (379)
....-..+.|.+.+.-+++-. + ....+.+++++. ..+....+-.++|...+|.|.++.+++.+ ++-
T Consensus 221 fk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e--~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa 298 (561)
T COG5354 221 FKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE--RSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPA 298 (561)
T ss_pred EeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc--cccceeccccccceeeeecccCCceeEEeccccc
Confidence 001112233443222111110 0 124577777762 33443335578999999999988876655 788
Q ss_pred eEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEec---CcEEEEeCCCceEEE-ecccccCCccCceeE
Q 016974 273 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN---GDCYVWDTLLAKVVL-NLGSLQNSHEGRITC 348 (379)
Q Consensus 273 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~d---g~i~iwd~~~~~~~~-~~~~~~~~h~~~v~~ 348 (379)
++-++|++.. +..+..+.. -+.+-|||.+++++.++.| |.+.+||........ .+ .+- .-.-
T Consensus 299 ~~s~~~lr~N--l~~~~Pe~~------rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~----~~~--n~s~ 364 (561)
T COG5354 299 SVSVFDLRGN--LRFYFPEQK------RNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAF----NGL--NTSY 364 (561)
T ss_pred ceeecccccc--eEEecCCcc------cccccccCcccEEEEecCCccccceEEeccCCceEEEEEe----ecC--CceE
Confidence 9999999865 333322222 2467899999999887654 689999976554433 22 111 1234
Q ss_pred EEECCCCCeEEEee------CCCcEEEEecCc
Q 016974 349 LGLSADGSALCTGS------WDTNLKIWAFGG 374 (379)
Q Consensus 349 ~~~s~d~~~l~s~s------~D~~i~vw~~~~ 374 (379)
+.|+||++++-+.- .|..|+||++.+
T Consensus 365 ~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 365 CDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred eeccCCceEEEecCCCcccccCcceEEEEecC
Confidence 57999999988753 378899999876
No 257
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.30 E-value=1.1e-08 Score=104.94 Aligned_cols=260 Identities=12% Similarity=0.150 Sum_probs=158.5
Q ss_pred EEEEECCC-CCEEEEeeCCCcEEEEEcCCCCCC----CCCcce-eee-ecccccceEEEEEecCCCceEEEeeCCCeEEE
Q 016974 113 MTCAFSPT-GQSVACGGLDSVCSIFNLNSPTDK----DGNLPV-SRM-LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVL 185 (379)
Q Consensus 113 ~~~~~s~~-g~~l~~~~~d~~i~iw~~~~~~~~----~~~~~~-~~~-~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~ 185 (379)
..+++++. |.++++-..++.|.++|....... .+..-. ... -.++-.....+++.++++.++++-...+.|+.
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 35778774 567777778888999987642100 000000 000 00011224567887765444455556678999
Q ss_pred eecCCCeeEEEecCc-----cccC------CccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecc-----
Q 016974 186 WDITTGLRTSVFGGE-----FQSG------HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH----- 249 (379)
Q Consensus 186 wd~~~~~~~~~~~~~-----~~~~------h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h----- 249 (379)
+|+.++......+.. +..+ ....-..+++++.++.++++.+.++.|++||..... +..+.+.
T Consensus 651 id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~--v~~~~G~G~~~~ 728 (1057)
T PLN02919 651 IDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV--TRVFSGDGYERN 728 (1057)
T ss_pred EecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe--EEEEecCCcccc
Confidence 998776433222110 0000 011235678887677888888899999999976432 2222111
Q ss_pred ----------cCCeeEEEEccCCC-EEEEeeCCCeEEEEECCCCceeEEEee---------ccCCC-------CCCCeEE
Q 016974 250 ----------EGDVNTVKFFPDGN-RFGTGSDDGTCRLFDIRTGHQLQVYYQ---------QHGEN-------EIPHVTS 302 (379)
Q Consensus 250 ----------~~~v~~v~~sp~g~-~l~s~s~D~~i~iwd~~~~~~~~~~~~---------~~~~~-------~~~~v~~ 302 (379)
-...+.++++|+|+ .+++-+.++.|++||+.++........ ..+.. .......
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G 808 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG 808 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence 12346799999998 455667789999999987653211100 00000 0112468
Q ss_pred EEEccCCCEEEEEEecCcEEEEeCCCceEEEeccccc---------CCccCceeEEEECCCCCeEEEeeCCCcEEEEecC
Q 016974 303 IAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ---------NSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 373 (379)
Q Consensus 303 ~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~---------~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~ 373 (379)
++|+++|+++++-..++.|++||..++......+.-. ...-.....++++++|+.+++-+.+++|++|++.
T Consensus 809 vavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 809 VLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred eeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 9999999988888889999999987766543322110 1112346789999999999998999999999986
Q ss_pred c
Q 016974 374 G 374 (379)
Q Consensus 374 ~ 374 (379)
.
T Consensus 889 ~ 889 (1057)
T PLN02919 889 K 889 (1057)
T ss_pred C
Confidence 5
No 258
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.29 E-value=1.2e-08 Score=104.55 Aligned_cols=252 Identities=15% Similarity=0.134 Sum_probs=160.6
Q ss_pred EEEEeeCC-CCeEEEEcCCCcEEEEECCCCceeeEeecC--------------CcceEEEEECCCCCEEEEee-CCCcEE
Q 016974 71 YSLDWTSE-RNRIVSASQDGRLIVWNALTSQKTHAIKLP--------------CAWVMTCAFSPTGQSVACGG-LDSVCS 134 (379)
Q Consensus 71 ~~~~~~~~-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~--------------~~~v~~~~~s~~g~~l~~~~-~d~~i~ 134 (379)
..+++++. ++.+++-+..+.|+++|.. +.....+... ......+++++++..|+.+. ..+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 35778774 5677777888999999975 4444433221 11246788999888665544 456788
Q ss_pred EEEcCCCCCCCCCcceeeeecc----------c-------ccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEe
Q 016974 135 IFNLNSPTDKDGNLPVSRMLSG----------H-------KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF 197 (379)
Q Consensus 135 iw~~~~~~~~~~~~~~~~~~~~----------h-------~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 197 (379)
++|+.+.. ..++.+ . -..-..+++.|+++..+++.+.++.|++||..++......
T Consensus 650 ~id~~~~~--------V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~ 721 (1057)
T PLN02919 650 EIDFVNET--------VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFS 721 (1057)
T ss_pred EEecCCCE--------EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEe
Confidence 88875421 111100 0 0123468898866677788888999999999876543221
Q ss_pred cCcc---ccC------CccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEE------------Ee--------c
Q 016974 198 GGEF---QSG------HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT------------FH--------G 248 (379)
Q Consensus 198 ~~~~---~~~------h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~------------~~--------~ 248 (379)
+... ..+ .......+++++.+..++++.+.++.|++||+......+.. +- .
T Consensus 722 G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~ 801 (1057)
T PLN02919 722 GDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEV 801 (1057)
T ss_pred cCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhh
Confidence 1100 001 11234568888755557888888999999998754221100 00 0
Q ss_pred ccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeecc--------CCCCCCCeEEEEEccCCCEEEEEEecCc
Q 016974 249 HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH--------GENEIPHVTSIAFSISGRLLFAGYSNGD 320 (379)
Q Consensus 249 h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~--------~~~~~~~v~~~~fs~~g~~l~sg~~dg~ 320 (379)
.-.....++++++|+.+++-+.++.|++||..++......-... ..........++++++|+++++-+.++.
T Consensus 802 ~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~ 881 (1057)
T PLN02919 802 LLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSL 881 (1057)
T ss_pred hccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCE
Confidence 01124689999999999999999999999998765443221100 0011224678999999998888888999
Q ss_pred EEEEeCCCceE
Q 016974 321 CYVWDTLLAKV 331 (379)
Q Consensus 321 i~iwd~~~~~~ 331 (379)
|++||..+++.
T Consensus 882 Irvid~~~~~~ 892 (1057)
T PLN02919 882 IRYLDLNKGEA 892 (1057)
T ss_pred EEEEECCCCcc
Confidence 99999877654
No 259
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=3.3e-09 Score=99.57 Aligned_cols=201 Identities=16% Similarity=0.156 Sum_probs=120.9
Q ss_pred ecccccceEEEEEecCCCceEEEeeCCC--eEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCc-
Q 016974 154 LSGHKGYVSCCQYVPDEDTHLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST- 230 (379)
Q Consensus 154 ~~~h~~~v~~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~- 230 (379)
+..+...+....|+|++...+.+...++ .|.+||+.++....... .........|+|.+..++++.+.++.
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~------~~g~~~~~~wSPDG~~La~~~~~~g~~ 286 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS------FPGINGAPRFSPDGKKLALVLSKDGQP 286 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecC------CCCCcCCeeECCCCCEEEEEEeCCCCe
Confidence 3445567788899998754433333333 58888988775433221 11123356788755555566677775
Q ss_pred -EEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeC-CC--eEEEEECCCCceeEEEeeccCCCCCCCeEEEEEc
Q 016974 231 -ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DG--TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS 306 (379)
Q Consensus 231 -i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~-D~--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs 306 (379)
|.++|+... ....+..+.......+|+|||+.|+..+. ++ .|.++|+.+++....... +. .....+|+
T Consensus 287 ~Iy~~dl~tg--~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~--g~----~~~~~~~S 358 (448)
T PRK04792 287 EIYVVDIATK--ALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFE--GE----QNLGGSIT 358 (448)
T ss_pred EEEEEECCCC--CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecC--CC----CCcCeeEC
Confidence 666676543 33444445556678899999998876654 33 466778877664333211 11 12346899
Q ss_pred cCCCEEEEEEe-cC--cEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCC-Cc--EEEEecCc
Q 016974 307 ISGRLLFAGYS-NG--DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD-TN--LKIWAFGG 374 (379)
Q Consensus 307 ~~g~~l~sg~~-dg--~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D-~~--i~vw~~~~ 374 (379)
|||++|+..+. ++ .|.++|..+++... +. ... ......|+|||+.|+..+.+ +. +++++.++
T Consensus 359 pDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt---~~~--~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G 426 (448)
T PRK04792 359 PDGRSMIMVNRTNGKFNIARQDLETGAMQV-LT---STR--LDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG 426 (448)
T ss_pred CCCCEEEEEEecCCceEEEEEECCCCCeEE-cc---CCC--CCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 99998877654 34 45667776665432 21 111 11234799999988876554 33 66667665
No 260
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.27 E-value=9.9e-08 Score=82.29 Aligned_cols=276 Identities=15% Similarity=0.202 Sum_probs=165.9
Q ss_pred cccccEEEEEeeCCCCeEEEEcCC---CcEEEEECCC--Cceee--EeecCCcceEEEEECCCCCEEEEeeCC-CcEEEE
Q 016974 65 GHAGKVYSLDWTSERNRIVSASQD---GRLIVWNALT--SQKTH--AIKLPCAWVMTCAFSPTGQSVACGGLD-SVCSIF 136 (379)
Q Consensus 65 gH~~~v~~~~~~~~~~~l~s~s~D---~~v~iwd~~~--~~~~~--~~~~~~~~v~~~~~s~~g~~l~~~~~d-~~i~iw 136 (379)
.+.+..+=|+|+|+++.|.++-.+ |.|.-+.+.. |+... ........-.-++++++|+++++++.. +.|.++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 455567778999999999988544 6777766543 44322 112223333668899999999999874 678888
Q ss_pred EcCCCCCCCCCcceeeeecccccc----------eEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCc
Q 016974 137 NLNSPTDKDGNLPVSRMLSGHKGY----------VSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHT 206 (379)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~h~~~----------v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~ 206 (379)
-++.. |.+........|.+. +.+..+.|++..+++..-.--.|.+|++..+.....-.... ...
T Consensus 117 p~~~d----G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v--~~G 190 (346)
T COG2706 117 PLQAD----GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV--KPG 190 (346)
T ss_pred EcccC----CccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc--CCC
Confidence 87642 111111111223333 67778889875444444455678899998765433222221 233
Q ss_pred cCeEEEEEeCCCCcEE-EEecCCCcEEEEEccCCccceEEEecc---------cCCeeEEEEccCCCEEEEeeC-CCeEE
Q 016974 207 ADVLSVSISGSNSRMF-VSGSCDSTARLWDTRVASRAVRTFHGH---------EGDVNTVKFFPDGNRFGTGSD-DGTCR 275 (379)
Q Consensus 207 ~~v~~~~~~~~~~~~l-~sg~~d~~i~vwd~~~~~~~~~~~~~h---------~~~v~~v~~sp~g~~l~s~s~-D~~i~ 275 (379)
..-..+.|+| ++++. +.+-.+++|-+|........+..++-+ ....-++..+|||++|.++-. ...|-
T Consensus 191 ~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~ 269 (346)
T COG2706 191 AGPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIA 269 (346)
T ss_pred CCcceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEE
Confidence 4567788998 45554 455568999999987643333333322 234667889999999887642 33788
Q ss_pred EEECCCC-ceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecC-cEEEEeC--CCceEEEecccccCCccCceeEEEE
Q 016974 276 LFDIRTG-HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-DCYVWDT--LLAKVVLNLGSLQNSHEGRITCLGL 351 (379)
Q Consensus 276 iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg-~i~iwd~--~~~~~~~~~~~~~~~h~~~v~~~~~ 351 (379)
+|.+... ..+..... ... +.-......|+++|++|+++..++ .|.+|.. .+++...... ........|+.|
T Consensus 270 ~f~V~~~~g~L~~~~~-~~t-eg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~---~~~~p~Pvcv~f 344 (346)
T COG2706 270 VFSVDPDGGKLELVGI-TPT-EGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGR---YAVVPEPVCVKF 344 (346)
T ss_pred EEEEcCCCCEEEEEEE-ecc-CCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEeccc---ccCCCCcEEEEE
Confidence 8876543 22322221 111 112246889999999999988665 6888854 4444332221 112233456666
Q ss_pred C
Q 016974 352 S 352 (379)
Q Consensus 352 s 352 (379)
.
T Consensus 345 ~ 345 (346)
T COG2706 345 L 345 (346)
T ss_pred c
Confidence 4
No 261
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.26 E-value=2.8e-08 Score=88.61 Aligned_cols=242 Identities=15% Similarity=0.162 Sum_probs=141.3
Q ss_pred eeCCCCeEEEEcC----------CCcEEEEECCCCceeeEeecCCc-------ceEEEEECCCCCEEEEee-C-CCcEEE
Q 016974 75 WTSERNRIVSASQ----------DGRLIVWNALTSQKTHAIKLPCA-------WVMTCAFSPTGQSVACGG-L-DSVCSI 135 (379)
Q Consensus 75 ~~~~~~~l~s~s~----------D~~v~iwd~~~~~~~~~~~~~~~-------~v~~~~~s~~g~~l~~~~-~-d~~i~i 135 (379)
++||++.|+.+.. +..|.+||..+.+.+..+..+.. .....+++|+|++|+... . +..+.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 8999998877655 78999999999999988876432 234678999999998776 3 688999
Q ss_pred EEcCCCCCCCCCcceeeeec-ccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEE-E
Q 016974 136 FNLNSPTDKDGNLPVSRMLS-GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV-S 213 (379)
Q Consensus 136 w~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~-~ 213 (379)
.|+.+.. +...+. +-...++ .. +. .....-+.||......+.+.............+....+..- .
T Consensus 133 vD~~~~k-------vv~ei~vp~~~~vy--~t-~e--~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~ 200 (352)
T TIGR02658 133 VDLEGKA-------FVRMMDVPDCYHIF--PT-AN--DTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPA 200 (352)
T ss_pred EECCCCc-------EEEEEeCCCCcEEE--Ee-cC--CccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCc
Confidence 9987632 111111 1011111 11 11 11112234444333222211101100000000000001000 2
Q ss_pred EeCCCCcEEEEecCCCcEEEEEccCCc----cceEEEec-------ccCCeeEEEEccCCCEEEEee----------CCC
Q 016974 214 ISGSNSRMFVSGSCDSTARLWDTRVAS----RAVRTFHG-------HEGDVNTVKFFPDGNRFGTGS----------DDG 272 (379)
Q Consensus 214 ~~~~~~~~l~sg~~d~~i~vwd~~~~~----~~~~~~~~-------h~~~v~~v~~sp~g~~l~s~s----------~D~ 272 (379)
+.+.++.++..... |.|.+.|+.... .....+.. ..+...-++++|+++.+.... ..+
T Consensus 201 ~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~ 279 (352)
T TIGR02658 201 YSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASR 279 (352)
T ss_pred eEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCC
Confidence 23334555554444 999999954221 12221111 122233499999998887743 125
Q ss_pred eEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCC-EEEEEE-ecCcEEEEeCCCceEEEec
Q 016974 273 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGY-SNGDCYVWDTLLAKVVLNL 335 (379)
Q Consensus 273 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~-~l~sg~-~dg~i~iwd~~~~~~~~~~ 335 (379)
.|.++|..+++.+..+.... .+..++|+|||+ +|++.. .++.|.+.|..+++.+..+
T Consensus 280 ~V~ViD~~t~kvi~~i~vG~------~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 280 FLFVVDAKTGKRLRKIELGH------EIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEEEECCCCeEEEEEeCCC------ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 79999999998887664322 478999999999 777665 5788999999998887765
No 262
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.26 E-value=9.4e-11 Score=118.01 Aligned_cols=198 Identities=18% Similarity=0.303 Sum_probs=144.3
Q ss_pred ecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEE
Q 016974 106 KLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVL 185 (379)
Q Consensus 106 ~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~ 185 (379)
+-+...|.++.-+|...+.++|+.||.+++|....+. +..+.+ ..|. ..|+.+.|+..+ +.+..+..||.+.+
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~----~v~~~r-t~g~-s~vtr~~f~~qG-nk~~i~d~dg~l~l 2277 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQ----QVVCFR-TAGN-SRVTRSRFNHQG-NKFGIVDGDGDLSL 2277 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCC----eEEEee-ccCc-chhhhhhhcccC-CceeeeccCCceee
Confidence 3344567777778999999999999999999886432 222222 2233 778888998876 45778889999999
Q ss_pred eecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEe---cCCCcEEEEEccCCccceEEEecccCCeeEEEEccCC
Q 016974 186 WDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG---SCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG 262 (379)
Q Consensus 186 wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg---~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g 262 (379)
|.+..... +.. .-|......+.|-. .+++++ +.++.+.+||.......-....+|.+.++++++-|..
T Consensus 2278 ~q~~pk~~---~s~---qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~ 2348 (2439)
T KOG1064|consen 2278 WQASPKPY---TSW---QCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKH 2348 (2439)
T ss_pred cccCCcce---ecc---ccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcc
Confidence 99863221 111 45777777777764 355554 3578899999765433323337899999999999999
Q ss_pred CEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEe
Q 016974 263 NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLN 334 (379)
Q Consensus 263 ~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~ 334 (379)
+.|++||.+|.|++||++..+.++.+.. +. ...++++|+..|.|+||++.....+.+
T Consensus 2349 qllisggr~G~v~l~D~rqrql~h~~~~--------------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~ 2405 (2439)
T KOG1064|consen 2349 QLLISGGRKGEVCLFDIRQRQLRHTFQA--------------LD-TREYFVTGSSEGNIKIWRLSEFGLLHT 2405 (2439)
T ss_pred eEEEecCCcCcEEEeehHHHHHHHHhhh--------------hh-hhheeeccCcccceEEEEccccchhhc
Confidence 9999999999999999997666554421 23 456899999999999999876654433
No 263
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.25 E-value=7.6e-08 Score=85.85 Aligned_cols=267 Identities=10% Similarity=0.060 Sum_probs=152.3
Q ss_pred CcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeC----------CCcEEEEEcCCCCCCCCCcceeee-eccc
Q 016974 89 GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL----------DSVCSIFNLNSPTDKDGNLPVSRM-LSGH 157 (379)
Q Consensus 89 ~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~----------d~~i~iw~~~~~~~~~~~~~~~~~-~~~h 157 (379)
++|.+.|..+.+.+..+......-. + ++|||+.|+.+.. +..|.+||..+.... .+++.... ....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~-~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPI-ADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEE-eEEccCCCchhhc
Confidence 8899999999888887775443332 4 9999997766654 789999998764311 01110000 0000
Q ss_pred ccceEEEEEecCCCceEEEee-C-CCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEE
Q 016974 158 KGYVSCCQYVPDEDTHLITSS-G-DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWD 235 (379)
Q Consensus 158 ~~~v~~~~~~~~~~~~l~s~~-~-d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd 235 (379)
-......+++|++. +|+... . +..|.+.|+.++..+..+.. +-...+. ... +... ..-+.||......
T Consensus 104 ~~~~~~~~ls~dgk-~l~V~n~~p~~~V~VvD~~~~kvv~ei~v----p~~~~vy---~t~-e~~~-~~~~~Dg~~~~v~ 173 (352)
T TIGR02658 104 GTYPWMTSLTPDNK-TLLFYQFSPSPAVGVVDLEGKAFVRMMDV----PDCYHIF---PTA-NDTF-FMHCRDGSLAKVG 173 (352)
T ss_pred cCccceEEECCCCC-EEEEecCCCCCEEEEEECCCCcEEEEEeC----CCCcEEE---Eec-CCcc-EEEeecCceEEEE
Confidence 11223567888864 455443 3 79999999998876665532 1111111 111 1111 1223444444332
Q ss_pred ccCCccc----eEEEecccCCee-EEEEcc-CCCEEEEeeCCCeEEEEECCCCc-----eeEEEeeccC--CCCCCCeEE
Q 016974 236 TRVASRA----VRTFHGHEGDVN-TVKFFP-DGNRFGTGSDDGTCRLFDIRTGH-----QLQVYYQQHG--ENEIPHVTS 302 (379)
Q Consensus 236 ~~~~~~~----~~~~~~h~~~v~-~v~~sp-~g~~l~s~s~D~~i~iwd~~~~~-----~~~~~~~~~~--~~~~~~v~~ 302 (379)
+....+. ...+.+...++. .-.|.+ +|+++..... |+|.+.|+.... ....+..... .-..+.+..
T Consensus 174 ~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ 252 (352)
T TIGR02658 174 YGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQ 252 (352)
T ss_pred ecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCccee
Confidence 2221111 111111111110 014456 8877766555 999999964432 2222111100 001123455
Q ss_pred EEEccCCCEEEEEE----------ecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCC-eEEEee-CCCcEEEE
Q 016974 303 IAFSISGRLLFAGY----------SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS-ALCTGS-WDTNLKIW 370 (379)
Q Consensus 303 ~~fs~~g~~l~sg~----------~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~-~l~s~s-~D~~i~vw 370 (379)
++++|+|+.++... ..+.|.++|..+.+.+..+. .+ ..+..++++||++ .|++.. .++.|.+.
T Consensus 253 ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~---vG--~~~~~iavS~Dgkp~lyvtn~~s~~VsVi 327 (352)
T TIGR02658 253 VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE---LG--HEIDSINVSQDAKPLLYALSTGDKTLYIF 327 (352)
T ss_pred EEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe---CC--CceeeEEECCCCCeEEEEeCCCCCcEEEE
Confidence 99999999888742 12479999999998887653 22 3678999999999 888766 57889999
Q ss_pred ecCc
Q 016974 371 AFGG 374 (379)
Q Consensus 371 ~~~~ 374 (379)
|...
T Consensus 328 D~~t 331 (352)
T TIGR02658 328 DAET 331 (352)
T ss_pred ECcC
Confidence 9765
No 264
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=5.4e-11 Score=106.94 Aligned_cols=251 Identities=17% Similarity=0.231 Sum_probs=162.2
Q ss_pred EeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeE
Q 016974 104 AIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 183 (379)
Q Consensus 104 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i 183 (379)
.+.+|...|..++--.+.+.+++++.|+++++|.+.+.....+...+..+++.|+.+|..+.|..+. ..++ +.|+.|
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l-r~i~--ScD~gi 806 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL-RSIA--SCDGGI 806 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc-ceee--eccCcc
Confidence 3445666666665555667889999999999999987655555555677889999999999998764 3444 569999
Q ss_pred EEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEE-ecCCCcEEEEEccCCcc--ceEEE--ecccCCeeEEEE
Q 016974 184 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS-GSCDSTARLWDTRVASR--AVRTF--HGHEGDVNTVKF 258 (379)
Q Consensus 184 ~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s-g~~d~~i~vwd~~~~~~--~~~~~--~~h~~~v~~v~~ 258 (379)
.+||.--+..+......-..+....|.++.- -+..+++. ++...+|+++|.+...- ..+.. .+.++.+.+++.
T Consensus 807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~n--v~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLEN--VDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred eeecccccchhHhhhcCcccCCCceeEeccc--CcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 9999766544433222211122223333321 13334444 47889999999886432 11222 234566889999
Q ss_pred ccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEE-EeCCCceEEEeccc
Q 016974 259 FPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV-WDTLLAKVVLNLGS 337 (379)
Q Consensus 259 sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~i-wd~~~~~~~~~~~~ 337 (379)
-|.|+.++.+-..|.|-+.|.++|+.+..+.. . + .....++ .|..+.++....|.++.+ |-...+......+
T Consensus 885 a~~GN~lAa~LSnGci~~LDaR~G~vINswrp-m-e---cdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~k- 957 (1034)
T KOG4190|consen 885 ADKGNKLAAALSNGCIAILDARNGKVINSWRP-M-E---CDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDK- 957 (1034)
T ss_pred ccCcchhhHHhcCCcEEEEecCCCceeccCCc-c-c---chhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccC-
Confidence 99999999999999999999999987765421 1 1 1122333 477788888888888888 9766665544432
Q ss_pred ccCCccCceeEEEECCCCCeEEEeeCCCcEEEEe
Q 016974 338 LQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA 371 (379)
Q Consensus 338 ~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~ 371 (379)
....+---+ -.-|.-|+++-..+.+.||.
T Consensus 958 ---pppepahfl--qsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 958 ---PPPEPAHFL--QSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred ---CCCcchhhh--hccCceeEEeccCcEEEEEe
Confidence 111111100 12345667666666777774
No 265
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.24 E-value=5.2e-09 Score=86.28 Aligned_cols=270 Identities=14% Similarity=0.061 Sum_probs=166.0
Q ss_pred CCCcEEEEECCCCce-eeEeecCCcceEEEEECC-----CCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccc
Q 016974 87 QDGRLIVWNALTSQK-THAIKLPCAWVMTCAFSP-----TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGY 160 (379)
Q Consensus 87 ~D~~v~iwd~~~~~~-~~~~~~~~~~v~~~~~s~-----~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~ 160 (379)
....|-+|+..+... +..+ -..+.|.| ...+||.||.-|...+|...+... .......|...
T Consensus 50 ~t~sv~i~~~y~N~~~iv~~------y~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~------h~~~cd~snn~ 117 (344)
T KOG4532|consen 50 KTISVPINSHYSNPKGIVEF------YTGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDG------HLYQCDVSNND 117 (344)
T ss_pred ceeeeEeccccCCchhhEEe------eecccccchHhhccccEEEeccccceeeeecccCccc------ceeeecccccc
Confidence 344577777665431 1111 12344555 345899999999999999875321 11122223332
Q ss_pred eEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCcc--CeEEEEEeCCCCcEEEEecCCCcEEEEEccC
Q 016974 161 VSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA--DVLSVSISGSNSRMFVSGSCDSTARLWDTRV 238 (379)
Q Consensus 161 v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~ 238 (379)
|.-+.=..+...-+.-++.|.++++.++.-+.... ..|.. .+.++.+++ +++++++-+....|-.|.+..
T Consensus 118 v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~-------~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~ 189 (344)
T KOG4532|consen 118 VTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKF-------AVHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDD 189 (344)
T ss_pred hhhhhhhcccccceeeccCCcceeEEEEecCcccc-------eeeccccceeeeEEcC-CCceEEEecCCCcceEEEeCC
Confidence 22111111222346678889999998876542211 12332 367888886 778888888888999998876
Q ss_pred Cccce-E-EEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCC--EEEE
Q 016974 239 ASRAV-R-TFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR--LLFA 314 (379)
Q Consensus 239 ~~~~~-~-~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~--~l~s 314 (379)
..+.+ + .....+..-.+..|+.....+|+++.||++.|||++...............+.+.+..+.|++-|. +|+-
T Consensus 190 ~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~ 269 (344)
T KOG4532|consen 190 ESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFI 269 (344)
T ss_pred ccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEE
Confidence 54422 2 222334456788999988899999999999999999765544333333444677899999998765 3444
Q ss_pred EEecCcEEEEeCCCceEEEec---ccccCCccC-ceeEEEECCCCCeEEEeeCCCcEEEEecCceee
Q 016974 315 GYSNGDCYVWDTLLAKVVLNL---GSLQNSHEG-RITCLGLSADGSALCTGSWDTNLKIWAFGGYRR 377 (379)
Q Consensus 315 g~~dg~i~iwd~~~~~~~~~~---~~~~~~h~~-~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~~~~ 377 (379)
.-.=+.+++-|+++++....+ ......|.. -|..-.|+.++.-+.+.+++ .+.=|.+.+.+|
T Consensus 270 sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~srsR 335 (344)
T KOG4532|consen 270 SEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSRSR 335 (344)
T ss_pred ecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccch-hhheeeccccce
Confidence 333457889998776543222 111122333 38888899888877776665 334455555555
No 266
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.20 E-value=2.3e-09 Score=91.30 Aligned_cols=244 Identities=17% Similarity=0.247 Sum_probs=145.9
Q ss_pred ceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccc------------cceEEEEEecCCC-ceEEEe
Q 016974 111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK------------GYVSCCQYVPDED-THLITS 177 (379)
Q Consensus 111 ~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~------------~~v~~~~~~~~~~-~~l~s~ 177 (379)
-+.++.|...|.+||+|..+|.+.++.-..... +.......++.|. ..|..+.|.++++ ..++..
T Consensus 27 iis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~--~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 27 IISAVEFDHYGERLATGDKGGRVVLFEREKLYK--GEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred ceeeEEeecccceEeecCCCCeEEEeecccccc--cceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 367788999999999999999999987543221 1222222333343 2466778877543 356777
Q ss_pred eCCCeEEEeecCCCeeEEEecCcc--ccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEE-EecccCCee
Q 016974 178 SGDQTCVLWDITTGLRTSVFGGEF--QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT-FHGHEGDVN 254 (379)
Q Consensus 178 ~~d~~i~~wd~~~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~-~~~h~~~v~ 254 (379)
+.|++|++|.+....... .+.. ..+....+.++.. -..+..|-.+-. .+.+. -.+|.-.|+
T Consensus 105 tNdktiKlWKi~er~~k~--~~~~~~~~~~~~~~~~lr~-------p~~~~~~~~vea-------~prRv~aNaHtyhiN 168 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKK--EGYNLPEEGPPGTITSLRL-------PVEGRHDLEVEA-------SPRRVYANAHTYHIN 168 (433)
T ss_pred cCCcceeeeeeecccccc--ccccccccCCCCccceeec-------eeeccccceeee-------eeeeeccccceeEee
Confidence 899999999986532211 0000 0111122222211 111222211111 11222 246888899
Q ss_pred EEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCC---CCCCeEEEEEccCC-CEEEEEEecCcEEEEeCCCce
Q 016974 255 TVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN---EIPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAK 330 (379)
Q Consensus 255 ~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~---~~~~v~~~~fs~~g-~~l~sg~~dg~i~iwd~~~~~ 330 (379)
+++++.|+..++|+ +|-.|.+|++.--.+...+......+ -...|++..|+|.. ++++-.++.|+|++-|++...
T Consensus 169 SIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~a 247 (433)
T KOG1354|consen 169 SISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSA 247 (433)
T ss_pred eeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhh
Confidence 99999999888774 67889999987543322222211111 12247889999964 466668899999999976322
Q ss_pred E-------EEecc-----cccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 331 V-------VLNLG-----SLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 331 ~-------~~~~~-----~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
. ..... .+...--..|..+.|++.|+++++=+. -+|+|||+++
T Consensus 248 LCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nm 302 (433)
T KOG1354|consen 248 LCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNM 302 (433)
T ss_pred hhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccc
Confidence 1 11100 000112246899999999999987544 6999999976
No 267
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.16 E-value=1.9e-09 Score=89.93 Aligned_cols=200 Identities=17% Similarity=0.105 Sum_probs=137.7
Q ss_pred EEEEEeeCCCCeEEEEcCCCcEEEEECCCCc--eeeEeecCCcceEEEEECCC-CCEEEEeeCCCcEEEEEcCCCCCCCC
Q 016974 70 VYSLDWTSERNRIVSASQDGRLIVWNALTSQ--KTHAIKLPCAWVMTCAFSPT-GQSVACGGLDSVCSIFNLNSPTDKDG 146 (379)
Q Consensus 70 v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~d~~i~iw~~~~~~~~~~ 146 (379)
..++.|++-+..++++-.+|.+-+-+-.... ..+..+.|.-....+.|+.. .+.+.+||.|+.+.-||++.+..
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~--- 200 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT--- 200 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc---
Confidence 4578899989899999999988855433332 23466778778888888754 47899999999999999984321
Q ss_pred CcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEec
Q 016974 147 NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS 226 (379)
Q Consensus 147 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~ 226 (379)
-+.+..+-|...|.++.-+|..+.++++|+.|..|++||.++..+.. +. ..-.+.|..+..+|.....++.++
T Consensus 201 --~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl-~~----~~v~GGVWRi~~~p~~~~~lL~~C 273 (339)
T KOG0280|consen 201 --FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPL-FK----AKVGGGVWRIKHHPEIFHRLLAAC 273 (339)
T ss_pred --eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcc-cc----CccccceEEEEecchhhhHHHHHH
Confidence 12333456778888888888778899999999999999998532211 11 233477888888886655555555
Q ss_pred CCCcEEEEEccCCcc----ceEEEecccCCeeEEEEccCCCEEEEee-CCCeEE-EEEC
Q 016974 227 CDSTARLWDTRVASR----AVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCR-LFDI 279 (379)
Q Consensus 227 ~d~~i~vwd~~~~~~----~~~~~~~h~~~v~~v~~sp~g~~l~s~s-~D~~i~-iwd~ 279 (379)
+-...+|-+...... .......|.+-+..-.|......|||++ .|+.++ +|-.
T Consensus 274 Mh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~ 332 (339)
T KOG0280|consen 274 MHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLH 332 (339)
T ss_pred HhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeee
Confidence 555567776654322 2334556777677777754445688876 566644 6643
No 268
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=3.5e-08 Score=89.18 Aligned_cols=284 Identities=16% Similarity=0.176 Sum_probs=161.9
Q ss_pred ccccEEEEEeeCCCCeEEEEcCC-----------CcEEEEECCCCceeeEeecCCc---ceEEEEECCCCCEEEEeeCCC
Q 016974 66 HAGKVYSLDWTSERNRIVSASQD-----------GRLIVWNALTSQKTHAIKLPCA---WVMTCAFSPTGQSVACGGLDS 131 (379)
Q Consensus 66 H~~~v~~~~~~~~~~~l~s~s~D-----------~~v~iwd~~~~~~~~~~~~~~~---~v~~~~~s~~g~~l~~~~~d~ 131 (379)
|.+ |.-++|||..++|+|-|.. ..++|||+.+|.....+..... .-.-..||.|++++|....|
T Consensus 249 Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~- 326 (698)
T KOG2314|consen 249 HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN- 326 (698)
T ss_pred CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-
Confidence 544 7789999999999986531 5799999999998877765322 12335799999999998885
Q ss_pred cEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEee-----CCCeEEEeecCCCeeEEEecCccccCCc
Q 016974 132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS-----GDQTCVLWDITTGLRTSVFGGEFQSGHT 206 (379)
Q Consensus 132 ~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-----~d~~i~~wd~~~~~~~~~~~~~~~~~h~ 206 (379)
.|.||+..+-. +...-.-....|....|+|.+ ++|+-=. .-..+.|-.+.++..+.... -|.
T Consensus 327 sisIyEtpsf~-------lld~Kslki~gIr~FswsP~~-~llAYwtpe~~~~parvtL~evPs~~~iRt~n-----lfn 393 (698)
T KOG2314|consen 327 SISIYETPSFM-------LLDKKSLKISGIRDFSWSPTS-NLLAYWTPETNNIPARVTLMEVPSKREIRTKN-----LFN 393 (698)
T ss_pred eEEEEecCcee-------eecccccCCccccCcccCCCc-ceEEEEcccccCCcceEEEEecCccceeeecc-----cee
Confidence 57888754310 000000011234555677753 3333111 11123333333332222110 000
Q ss_pred cCeEEEEEeCCCCcEEEE----------ecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeC---CCe
Q 016974 207 ADVLSVSISGSNSRMFVS----------GSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD---DGT 273 (379)
Q Consensus 207 ~~v~~~~~~~~~~~~l~s----------g~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~---D~~ 273 (379)
-.=..+-|. .++.+|+. .+.-..+.|+.++...-++.... -...|...+|-|.|+.+++-+. ..+
T Consensus 394 VsDckLhWQ-k~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~t 471 (698)
T KOG2314|consen 394 VSDCKLHWQ-KSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-LKESVIAFAWEPHGDKFAVISGNTVKNT 471 (698)
T ss_pred eeccEEEec-cCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee-cchheeeeeeccCCCeEEEEEccccccc
Confidence 000112222 12333332 22233456666664434444333 3457888999999999876653 346
Q ss_pred EEEEECCC-CceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEE---ecCcEEEEeCCCceEEEecccccCCccCceeEE
Q 016974 274 CRLFDIRT-GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY---SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCL 349 (379)
Q Consensus 274 i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~---~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~ 349 (379)
+.+|.+++ ......... -.....+.+-|+|.|++++.+. ..|.+.++|........ +.. ..|. .-+.+
T Consensus 472 vsfY~~e~~~~~~~lVk~----~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~-~~~--~eh~-~at~v 543 (698)
T KOG2314|consen 472 VSFYAVETNIKKPSLVKE----LDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKD-TAS--PEHF-AATEV 543 (698)
T ss_pred eeEEEeecCCCchhhhhh----hcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhh-ccC--cccc-ccccc
Confidence 88888763 221111110 0112467899999999998864 57899999976322111 111 2344 34678
Q ss_pred EECCCCCeEEEeeCC------CcEEEEecCc
Q 016974 350 GLSADGSALCTGSWD------TNLKIWAFGG 374 (379)
Q Consensus 350 ~~s~d~~~l~s~s~D------~~i~vw~~~~ 374 (379)
.|.|.|++++++|.- .--+||.|.+
T Consensus 544 eWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 544 EWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred eECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 899999999998763 4457787766
No 269
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.13 E-value=8.4e-09 Score=86.79 Aligned_cols=258 Identities=18% Similarity=0.329 Sum_probs=159.7
Q ss_pred cceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccc------------cceEEEEEecC-CCceEEE
Q 016974 110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK------------GYVSCCQYVPD-EDTHLIT 176 (379)
Q Consensus 110 ~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~------------~~v~~~~~~~~-~~~~l~s 176 (379)
..++++-|...|.|++||...|.+.++.-....... ......+++|. ..|..+.|..+ +...++.
T Consensus 27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ce--ykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCE--YKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ceeeEEEeccccceEeecCCCceEEEeecccccccc--hhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 457888999999999999999999998754322110 11111233342 24566677643 3456777
Q ss_pred eeCCCeEEEeecCCCeeE-------------------------------------EEecC-ccccCCccCeEEEEEeCCC
Q 016974 177 SSGDQTCVLWDITTGLRT-------------------------------------SVFGG-EFQSGHTADVLSVSISGSN 218 (379)
Q Consensus 177 ~~~d~~i~~wd~~~~~~~-------------------------------------~~~~~-~~~~~h~~~v~~~~~~~~~ 218 (379)
.+.|++|++|.+...... ...+. .+...|.-.+.++.++. +
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-D 183 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-D 183 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC-c
Confidence 789999999987543100 00000 01235666778888874 5
Q ss_pred CcEEEEecCCCcEEEEEccCCccceE--EEeccc-----CCeeEEEEccC-CCEEEEeeCCCeEEEEECCCCceeE----
Q 016974 219 SRMFVSGSCDSTARLWDTRVASRAVR--TFHGHE-----GDVNTVKFFPD-GNRFGTGSDDGTCRLFDIRTGHQLQ---- 286 (379)
Q Consensus 219 ~~~l~sg~~d~~i~vwd~~~~~~~~~--~~~~h~-----~~v~~v~~sp~-g~~l~s~s~D~~i~iwd~~~~~~~~---- 286 (379)
...++ .+.|-.|.+|.+........ .++.|. .-|++..|+|. ...+.-.+..|.|++-|+|......
T Consensus 184 ~et~l-SaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 184 KETLL-SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred hheee-eccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 55555 45677899998875544332 223343 35889999995 4556666778999999998532210
Q ss_pred EE---eeccC----CCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceE-EEecccc--------cCCccCce---e
Q 016974 287 VY---YQQHG----ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV-VLNLGSL--------QNSHEGRI---T 347 (379)
Q Consensus 287 ~~---~~~~~----~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~-~~~~~~~--------~~~h~~~v---~ 347 (379)
.+ ..+.. ..-...|+.+.|+++|+||++-+.- +|.+||+...+. +.++.-. ...-...| .
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkF 341 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKF 341 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeE
Confidence 01 00000 0112357889999999999876543 799999876543 2222100 00112223 4
Q ss_pred EEEECCCCCeEEEeeCCCcEEEEec
Q 016974 348 CLGLSADGSALCTGSWDTNLKIWAF 372 (379)
Q Consensus 348 ~~~~s~d~~~l~s~s~D~~i~vw~~ 372 (379)
.+.||.|.+.+.+||..+.--++..
T Consensus 342 eisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 342 EISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred EEEecCCcccccccccccceeeecc
Confidence 5788999999999999988877763
No 270
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.13 E-value=5.6e-10 Score=100.52 Aligned_cols=290 Identities=14% Similarity=0.151 Sum_probs=170.8
Q ss_pred eccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCC-------CceeeEeecCCcceEEEEECCCCCEEEEeeCCCcE
Q 016974 61 RTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALT-------SQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVC 133 (379)
Q Consensus 61 ~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~-------~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i 133 (379)
..|.||+..|..+.--.+.+-++++|.|++|++|.+.. ..+-.++..|..+|..+.|-.+.+++++ -|+.+
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~gi 806 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGI 806 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcc
Confidence 47889999998887666778899999999999998753 2355667788889999999988888875 58899
Q ss_pred EEEEcCCCCCCCCCcceeeeec-ccccceEEEEEecC--CCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeE
Q 016974 134 SIFNLNSPTDKDGNLPVSRMLS-GHKGYVSCCQYVPD--EDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL 210 (379)
Q Consensus 134 ~iw~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~ 210 (379)
.+||.--.. +..+... ...+.+..+...++ ..-.++.++...+|+++|.+.+.....+......+..+.+.
T Consensus 807 HlWDPFigr------~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R 880 (1034)
T KOG4190|consen 807 HLWDPFIGR------LLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTR 880 (1034)
T ss_pred eeecccccc------hhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchhee
Confidence 999853211 0110110 11122222333333 22233444789999999999876555443333345566778
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEE-EECCCCceeEEEe
Q 016974 211 SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRL-FDIRTGHQLQVYY 289 (379)
Q Consensus 211 ~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~i-wd~~~~~~~~~~~ 289 (379)
+++..+ .++.++.+-.+|.|-+.|.+++ ..+..++.-+-....++ .|..+.++....|.++-+ |....+.......
T Consensus 881 ~iaVa~-~GN~lAa~LSnGci~~LDaR~G-~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~k 957 (1034)
T KOG4190|consen 881 AIAVAD-KGNKLAAALSNGCIAILDARNG-KVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDK 957 (1034)
T ss_pred EEEecc-CcchhhHHhcCCcEEEEecCCC-ceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccC
Confidence 888876 5667888889999999999876 44544443322222233 255667887788888888 8765543221111
Q ss_pred eccCCCCCC-CeEEEEEccCCCEEEEEEecCcEEEEeCCC-ceEEEeccc-ccCCccCceeEEEECCCCCeEEEeeCCCc
Q 016974 290 QQHGENEIP-HVTSIAFSISGRLLFAGYSNGDCYVWDTLL-AKVVLNLGS-LQNSHEGRITCLGLSADGSALCTGSWDTN 366 (379)
Q Consensus 290 ~~~~~~~~~-~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~-~~~~~~~~~-~~~~h~~~v~~~~~s~d~~~l~s~s~D~~ 366 (379)
...+.. ...+ -|.-+++......+.+|--.. .....++.. ......+..+.++--|-+.-...|...|.
T Consensus 958 ---pppepahflqs-----vgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~ 1029 (1034)
T KOG4190|consen 958 ---PPPEPAHFLQS-----VGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGA 1029 (1034)
T ss_pred ---CCCcchhhhhc-----cCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCc
Confidence 111100 0111 122344443333445553110 000010000 00123445677777676555556888888
Q ss_pred EEE
Q 016974 367 LKI 369 (379)
Q Consensus 367 i~v 369 (379)
|.+
T Consensus 1030 IaL 1032 (1034)
T KOG4190|consen 1030 IAL 1032 (1034)
T ss_pred eee
Confidence 875
No 271
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.12 E-value=1.9e-08 Score=85.82 Aligned_cols=195 Identities=16% Similarity=0.237 Sum_probs=132.2
Q ss_pred cccEEEEEeeCCCCeEEEEcCCCcEEEEECCC----CceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCC
Q 016974 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALT----SQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPT 142 (379)
Q Consensus 67 ~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~----~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~ 142 (379)
..++.++.+.++...|+.|-..|++.=+.+.. -..++....|...+..+-|+-..+.+++.+.|..+.---...+.
T Consensus 68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~ 147 (404)
T KOG1409|consen 68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGN 147 (404)
T ss_pred CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCC
Confidence 45689999999999999999999998886532 22334445677889999999999999999999876432222211
Q ss_pred CCCCCcceeeeecccccceEEEEEecC--CCceEEEeeCCCeEEEeecCCC--eeEEEecCccccCCccCeEEEEEeCCC
Q 016974 143 DKDGNLPVSRMLSGHKGYVSCCQYVPD--EDTHLITSSGDQTCVLWDITTG--LRTSVFGGEFQSGHTADVLSVSISGSN 218 (379)
Q Consensus 143 ~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~l~s~~~d~~i~~wd~~~~--~~~~~~~~~~~~~h~~~v~~~~~~~~~ 218 (379)
.- || .+....-.+. +-.+...|-..|.|..-.+... .....+ .+|.+.+.++.|.+ .
T Consensus 148 -~l----------g~--Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~-----~~h~~~~~~l~Wd~-~ 208 (404)
T KOG1409|consen 148 -RL----------GG--YNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTF-----NGHTGEVTCLKWDP-G 208 (404)
T ss_pred -cc----------cc--eEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEE-----cCcccceEEEEEcC-C
Confidence 00 00 1100000000 0001222333333333322211 112222 68999999999997 5
Q ss_pred CcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECC
Q 016974 219 SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 280 (379)
Q Consensus 219 ~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~ 280 (379)
..++.+|..|..+.+||+.........+.+|...|..+..-+--+.+.+++.||.|-+||+.
T Consensus 209 ~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 209 QRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred CcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 66889999999999999986655667889999999999988888899999999999999986
No 272
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.11 E-value=6.1e-08 Score=90.42 Aligned_cols=229 Identities=10% Similarity=0.080 Sum_probs=126.2
Q ss_pred ccccccccEEEEEeeCCCCe--E-EEEcCCC--cEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeC-CC----
Q 016974 62 TLQGHAGKVYSLDWTSERNR--I-VSASQDG--RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL-DS---- 131 (379)
Q Consensus 62 ~l~gH~~~v~~~~~~~~~~~--l-~s~s~D~--~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-d~---- 131 (379)
.|..+...+.+-.|+|||+. + ++...+| .|.+.++.+++.... ....+.....+|+|||+.|+..+. ++
T Consensus 179 ~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG~~Laf~s~~~g~~di 257 (428)
T PRK01029 179 PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRKKLLAFISDRYGNPDL 257 (428)
T ss_pred EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCCCEEEEEECCCCCcce
Confidence 34444556677899999975 2 2444444 466668776654332 222333456789999998887653 22
Q ss_pred cEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeec--CC-CeeEEEecCccccCCccC
Q 016974 132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI--TT-GLRTSVFGGEFQSGHTAD 208 (379)
Q Consensus 132 ~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~--~~-~~~~~~~~~~~~~~h~~~ 208 (379)
.+.+|++.... .+. ..+...++.+......|+|++..++.+...++...+|.+ .. +.....+ ..+...
T Consensus 258 ~~~~~~~~~g~--~g~--~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l-----t~~~~~ 328 (428)
T PRK01029 258 FIQSFSLETGA--IGK--PRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL-----TKKYRN 328 (428)
T ss_pred eEEEeecccCC--CCc--ceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe-----ccCCCC
Confidence 23345554321 011 112222222334567899987554445545676666643 21 1111111 122234
Q ss_pred eEEEEEeCCCCcEEEEecCC--CcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeC---CCeEEEEECCCCc
Q 016974 209 VLSVSISGSNSRMFVSGSCD--STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD---DGTCRLFDIRTGH 283 (379)
Q Consensus 209 v~~~~~~~~~~~~l~sg~~d--~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~---D~~i~iwd~~~~~ 283 (379)
+....|+|.+..+++++..+ ..|.+||+.... ...+......+....|+|||+.|+..+. ...|.++|+.+++
T Consensus 329 ~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~--~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 329 SSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR--DYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKK 406 (428)
T ss_pred ccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC--eEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 56677887544444444433 368899987542 2334333345678999999998875433 3468889988776
Q ss_pred eeEEEeeccCCCCCCCeEEEEEccC
Q 016974 284 QLQVYYQQHGENEIPHVTSIAFSIS 308 (379)
Q Consensus 284 ~~~~~~~~~~~~~~~~v~~~~fs~~ 308 (379)
...... .. +.+...+|+|-
T Consensus 407 ~~~Lt~-~~-----g~~~~p~Ws~~ 425 (428)
T PRK01029 407 TRKIVI-GS-----GEKRFPSWGAF 425 (428)
T ss_pred EEEeec-CC-----CcccCceecCC
Confidence 544332 11 12445667664
No 273
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.10 E-value=9.3e-08 Score=88.25 Aligned_cols=262 Identities=16% Similarity=0.102 Sum_probs=144.2
Q ss_pred CCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeeccc-
Q 016974 79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH- 157 (379)
Q Consensus 79 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h- 157 (379)
++.++.++.|+.+..+|..+|+................. .+..++.+..++.+..||..+... .........
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~-----~W~~~~~~~~ 177 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGER-----LWTYSRVTPA 177 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE--ECCEEEEECCCCeEEEEEcCCCce-----eeEEccCCCc
Confidence 456677778888888888888777665443221111111 244566667788888888764321 000000000
Q ss_pred ---ccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCc--c---Ce-EEEEEeCCCCcEEEEecCC
Q 016974 158 ---KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHT--A---DV-LSVSISGSNSRMFVSGSCD 228 (379)
Q Consensus 158 ---~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~--~---~v-~~~~~~~~~~~~l~sg~~d 228 (379)
.... .... .+ ..++.+..++.+..+|+.+|...-........+.. . .+ .+..+. + ..++.++.+
T Consensus 178 ~~~~~~~-sp~~-~~--~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~--~-~~vy~~~~~ 250 (377)
T TIGR03300 178 LTLRGSA-SPVI-AD--GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD--G-GQVYAVSYQ 250 (377)
T ss_pred eeecCCC-CCEE-EC--CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEE--C-CEEEEEEcC
Confidence 0000 0111 12 35777888899999999888643222110000000 0 00 011111 2 356667789
Q ss_pred CcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccC
Q 016974 229 STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS 308 (379)
Q Consensus 229 ~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~ 308 (379)
|.+..||..+.. .+-... .. ..... ..++..++.++.||.+..+|..+++.+-........ ....... .
T Consensus 251 g~l~a~d~~tG~-~~W~~~-~~-~~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~----~~ssp~i--~ 319 (377)
T TIGR03300 251 GRVAALDLRSGR-VLWKRD-AS-SYQGP--AVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYR----QLTAPAV--V 319 (377)
T ss_pred CEEEEEECCCCc-EEEeec-cC-CccCc--eEeCCEEEEECCCCeEEEEECCCCcEEEccccccCC----ccccCEE--E
Confidence 999999987653 332222 11 11111 235667888889999999999988765332111111 1112122 4
Q ss_pred CCEEEEEEecCcEEEEeCCCceEEEecccccCCccCcee-EEEECCCCCeEEEeeCCCcEEEEe
Q 016974 309 GRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRIT-CLGLSADGSALCTGSWDTNLKIWA 371 (379)
Q Consensus 309 g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~-~~~~s~d~~~l~s~s~D~~i~vw~ 371 (379)
+..|++++.+|.|+++|..+++.+..+. .+...+. ...+ .+ +.|+.++.||.|+.|.
T Consensus 320 g~~l~~~~~~G~l~~~d~~tG~~~~~~~----~~~~~~~~sp~~-~~-~~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 320 GGYLVVGDFEGYLHWLSREDGSFVARLK----TDGSGIASPPVV-VG-DGLLVQTRDGDLYAFR 377 (377)
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEEE----cCCCccccCCEE-EC-CEEEEEeCCceEEEeC
Confidence 6789999999999999998888876652 2222221 1122 23 4578899999998763
No 274
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.10 E-value=3.4e-07 Score=92.43 Aligned_cols=295 Identities=14% Similarity=0.114 Sum_probs=174.3
Q ss_pred cccEEEEEeeCCCCeEEEEcCCCcEEEE----ECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCC-
Q 016974 67 AGKVYSLDWTSERNRIVSASQDGRLIVW----NALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSP- 141 (379)
Q Consensus 67 ~~~v~~~~~~~~~~~l~s~s~D~~v~iw----d~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~- 141 (379)
.+.|.++.+-++...|+.+..+|.|.+. +..+.... ....-...|.+++||||++.|+.+..++++.+.+-+-.
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E-~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~ 153 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIE-IVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDP 153 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeE-EEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceE
Confidence 4578999999999999999999999999 54443322 22333456999999999999999999988877763310
Q ss_pred ---------C------------CCC-------CCc-------cee-----eeecccccceEEEEEecCCCceEEEeeC--
Q 016974 142 ---------T------------DKD-------GNL-------PVS-----RMLSGHKGYVSCCQYVPDEDTHLITSSG-- 179 (379)
Q Consensus 142 ---------~------------~~~-------~~~-------~~~-----~~~~~h~~~v~~~~~~~~~~~~l~s~~~-- 179 (379)
. .+. ++. |.. ..+. +.+.-..++|-.|+ .+++..+-
T Consensus 154 i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG-~yFAVss~~~ 231 (928)
T PF04762_consen 154 ISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDG-EYFAVSSVEP 231 (928)
T ss_pred EEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCC-cEEEEEEEEc
Confidence 0 000 000 000 0111 22233467888775 56665543
Q ss_pred ----CCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecC---CCcEEEEEccCCccceEEEe--ccc
Q 016974 180 ----DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC---DSTARLWDTRVASRAVRTFH--GHE 250 (379)
Q Consensus 180 ----d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~---d~~i~vwd~~~~~~~~~~~~--~h~ 250 (379)
-+.+++|+-+ |.....-+ .-.+--.+++|.| .++++|+... ...|.+|.-.-.+.--+.+. ...
T Consensus 232 ~~~~~R~iRVy~Re-G~L~stSE-----~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~ 304 (928)
T PF04762_consen 232 ETGSRRVIRVYSRE-GELQSTSE-----PVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEE 304 (928)
T ss_pred CCCceeEEEEECCC-ceEEeccc-----cCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCC
Confidence 3679999865 43222211 1111224567887 5667776543 23455554221111112222 345
Q ss_pred CCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCC-EEEEEEecCcEEEEe----
Q 016974 251 GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWD---- 325 (379)
Q Consensus 251 ~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~-~l~sg~~dg~i~iwd---- 325 (379)
..|..+.|++|+..||..-.|. |.+|-..+-+-- +++.-.-.....+..+.|+|... .|...+.+|.+..++
T Consensus 305 ~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWY--LKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~ 381 (928)
T PF04762_consen 305 EKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWY--LKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWD 381 (928)
T ss_pred ceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEE--EEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEE
Confidence 6799999999999999987665 999987764311 11110011112234488888543 466666667665543
Q ss_pred CCCc--------eEEEe----------cc---------cccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 326 TLLA--------KVVLN----------LG---------SLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 326 ~~~~--------~~~~~----------~~---------~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
+..+ ..+.. +. ...-.-..+|.+++|++++..+|+-..||+|.+|....
T Consensus 382 v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 382 VSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred EEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecC
Confidence 2111 00000 00 00011356899999999998899999999999998543
No 275
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.06 E-value=1.8e-06 Score=74.66 Aligned_cols=279 Identities=13% Similarity=0.144 Sum_probs=160.0
Q ss_pred CCcEEEEECCCCcee---eEeecCCcceEEEEECCCCCEEEEeeC---CCcEEEEEcCCCCCCCCCcceee--eeccccc
Q 016974 88 DGRLIVWNALTSQKT---HAIKLPCAWVMTCAFSPTGQSVACGGL---DSVCSIFNLNSPTDKDGNLPVSR--MLSGHKG 159 (379)
Q Consensus 88 D~~v~iwd~~~~~~~---~~~~~~~~~v~~~~~s~~g~~l~~~~~---d~~i~iw~~~~~~~~~~~~~~~~--~~~~h~~ 159 (379)
+.-|++|++.+..-. ..+-......+-++|+|+++.|.++.. ++.|.-|.++.. +|.+.... ...|+.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~---~G~Lt~ln~~~~~g~~- 90 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPD---DGRLTFLNRQTLPGSP- 90 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCC---CCeEEEeeccccCCCC-
Confidence 567999987643211 111223345677899999998888755 477888888753 13332221 122222
Q ss_pred ceEEEEEecCCCceEEEee-CCCeEEEeecCC-CeeEEE---ecCccccCC----ccCeEEEEEeCCCCcEEEEecC-CC
Q 016974 160 YVSCCQYVPDEDTHLITSS-GDQTCVLWDITT-GLRTSV---FGGEFQSGH----TADVLSVSISGSNSRMFVSGSC-DS 229 (379)
Q Consensus 160 ~v~~~~~~~~~~~~l~s~~-~d~~i~~wd~~~-~~~~~~---~~~~~~~~h----~~~v~~~~~~~~~~~~l~sg~~-d~ 229 (379)
-.-++..+++ .+++++. .-|.|.++-+.. |..... .......+| +..+-...+.| +++++++... --
T Consensus 91 -p~yvsvd~~g-~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~D 167 (346)
T COG2706 91 -PCYVSVDEDG-RFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTD 167 (346)
T ss_pred -CeEEEECCCC-CEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCc
Confidence 2446777765 4555554 567899998854 322111 100000111 11155555665 6667776642 22
Q ss_pred cEEEEEccCCccc---eEEEecccCCeeEEEEccCCCEEEEee-CCCeEEEEECCCC-ceeEEEeeccC----CCCCCCe
Q 016974 230 TARLWDTRVASRA---VRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTG-HQLQVYYQQHG----ENEIPHV 300 (379)
Q Consensus 230 ~i~vwd~~~~~~~---~~~~~~h~~~v~~v~~sp~g~~l~s~s-~D~~i~iwd~~~~-~~~~~~~~~~~----~~~~~~v 300 (379)
.|.+|++....-. ...++ -...-.-+.|+|++++....+ -+++|-+|..... ..+..+..... -......
T Consensus 168 ri~~y~~~dg~L~~~~~~~v~-~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~ 246 (346)
T COG2706 168 RIFLYDLDDGKLTPADPAEVK-PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWA 246 (346)
T ss_pred eEEEEEcccCccccccccccC-CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCce
Confidence 5889988743211 11121 223457899999999987776 4899999998763 22222211100 0112346
Q ss_pred EEEEEccCCCEEEEEE-ecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCC-CcEEEEecCc
Q 016974 301 TSIAFSISGRLLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD-TNLKIWAFGG 374 (379)
Q Consensus 301 ~~~~fs~~g~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D-~~i~vw~~~~ 374 (379)
..+..+|||++|.+.. ....|.+|.+....-...+......+...-....|+|.|++|+++..| .+|.+|..+.
T Consensus 247 aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 247 AAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred eEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 7899999999998774 233788886543211112211222333335678899999999988775 4799998776
No 276
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.04 E-value=7.7e-08 Score=89.58 Aligned_cols=278 Identities=15% Similarity=0.195 Sum_probs=173.1
Q ss_pred cccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCce---------------eeEeecCCcceEEEEECCCCCEEEEeeCCC
Q 016974 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQK---------------THAIKLPCAWVMTCAFSPTGQSVACGGLDS 131 (379)
Q Consensus 67 ~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~---------------~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~ 131 (379)
+....|++|+.+..++|.|+.||.+++-.+.+... -+++.+|.+.|..+.|+.+.+.|-+...+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 34578999999999999999999999997654221 135678999999999999999999999999
Q ss_pred cEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEE
Q 016974 132 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLS 211 (379)
Q Consensus 132 ~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~ 211 (379)
.|.+|-+-.. .+....+-...+..|.+++|..++ ..+...-.||.|.+=.+... ++ ++.+....| ...
T Consensus 94 lIiVWmlykg-----sW~EEMiNnRnKSvV~SmsWn~dG-~kIcIvYeDGavIVGsvdGN-RI--wgKeLkg~~---l~h 161 (1189)
T KOG2041|consen 94 LIIVWMLYKG-----SWCEEMINNRNKSVVVSMSWNLDG-TKICIVYEDGAVIVGSVDGN-RI--WGKELKGQL---LAH 161 (1189)
T ss_pred eEEEEeeecc-----cHHHHHhhCcCccEEEEEEEcCCC-cEEEEEEccCCEEEEeeccc-ee--cchhcchhe---ccc
Confidence 9999987642 221111112234567788898875 34666667777665544321 11 111111111 224
Q ss_pred EEEeCCCCcEEEEecCCCcEEEEEccCCc-------cceE---EEecccCCeeEEEEc--------cCCCEEEEeeCCCe
Q 016974 212 VSISGSNSRMFVSGSCDSTARLWDTRVAS-------RAVR---TFHGHEGDVNTVKFF--------PDGNRFGTGSDDGT 273 (379)
Q Consensus 212 ~~~~~~~~~~l~sg~~d~~i~vwd~~~~~-------~~~~---~~~~h~~~v~~v~~s--------p~g~~l~s~s~D~~ 273 (379)
+.|++ +.+.++-+-.+|.++++|.+..- +.+. .+......|..+.|. ||-..|+.+-..|.
T Consensus 162 v~ws~-D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr 240 (1189)
T KOG2041|consen 162 VLWSE-DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGR 240 (1189)
T ss_pred eeecc-cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCce
Confidence 55675 45556667788999999865210 1010 111111234455553 46778898888888
Q ss_pred EEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecC---------cEEEEeCCCceEEEecccccCCccC
Q 016974 274 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG---------DCYVWDTLLAKVVLNLGSLQNSHEG 344 (379)
Q Consensus 274 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg---------~i~iwd~~~~~~~~~~~~~~~~h~~ 344 (379)
+.|-.-........+.. ...+..+.|+|+|.+||.++.+. .|.+|.. -++...++ +....
T Consensus 241 ~QiMR~eND~~Pvv~dt------gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtl----kvpg~ 309 (1189)
T KOG2041|consen 241 MQIMRSENDPEPVVVDT------GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTL----KVPGS 309 (1189)
T ss_pred ehhhhhcCCCCCeEEec------ccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEE----ecCCc
Confidence 87754333222112211 12478899999999999987542 4555542 34444444 23345
Q ss_pred ceeEEEECCCCCeEEEeeCCCcEEE
Q 016974 345 RITCLGLSADGSALCTGSWDTNLKI 369 (379)
Q Consensus 345 ~v~~~~~s~d~~~l~s~s~D~~i~v 369 (379)
.|+.++|-..|-.+|-+ .|+.|++
T Consensus 310 ~It~lsWEg~gLriA~A-vdsfiyf 333 (1189)
T KOG2041|consen 310 CITGLSWEGTGLRIAIA-VDSFIYF 333 (1189)
T ss_pred eeeeeEEcCCceEEEEE-ecceEEE
Confidence 78999997666555543 5667655
No 277
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.00 E-value=1.1e-06 Score=81.09 Aligned_cols=267 Identities=15% Similarity=0.127 Sum_probs=154.3
Q ss_pred CCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeeccc
Q 016974 78 ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH 157 (379)
Q Consensus 78 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h 157 (379)
.++.++.++.++.|..+|..+|+.+.............. .++..++.++.++.+..+|..+.. ......+
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~-----~~W~~~~--- 133 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGK-----ELWRAKL--- 133 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCc-----Eeeeecc---
Confidence 366888999999999999999998877665543222222 246778888889999999876432 1111111
Q ss_pred ccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEcc
Q 016974 158 KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR 237 (379)
Q Consensus 158 ~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~ 237 (379)
.+.+.+.... .+ ..++.++.++.+..||..+|...-.+.............+.... + ..++.+..++.+..+|.+
T Consensus 134 ~~~~~~~p~v-~~-~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~ 208 (377)
T TIGR03300 134 SSEVLSPPLV-AN-GLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQ 208 (377)
T ss_pred CceeecCCEE-EC-CEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEEEEcc
Confidence 1112111111 12 35667788999999999988654333211000000000011111 2 256677788889888887
Q ss_pred CCccceEEEe-cccC------CeeEEEEcc--CCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccC
Q 016974 238 VASRAVRTFH-GHEG------DVNTVKFFP--DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS 308 (379)
Q Consensus 238 ~~~~~~~~~~-~h~~------~v~~v~~sp--~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~ 308 (379)
+... +.... +... ....+.-+| .+..+..++.++.+..||..+++.+-... ... ... ....
T Consensus 209 tG~~-~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~--~~~-----~~~--p~~~ 278 (377)
T TIGR03300 209 TGQP-LWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD--ASS-----YQG--PAVD 278 (377)
T ss_pred CCCE-eeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec--cCC-----ccC--ceEe
Confidence 5532 21111 0000 000011111 35578888899999999999987654332 111 111 1235
Q ss_pred CCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 309 GRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 309 g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
+..|+.++.||.++.+|..+++.......... ........ .+..|++++.||.|++++...
T Consensus 279 ~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~---~~~ssp~i--~g~~l~~~~~~G~l~~~d~~t 339 (377)
T TIGR03300 279 DNRLYVTDADGVVVALDRRSGSELWKNDELKY---RQLTAPAV--VGGYLVVGDFEGYLHWLSRED 339 (377)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEccccccC---CccccCEE--ECCEEEEEeCCCEEEEEECCC
Confidence 67888888999999999988876654321111 11111112 466888999999999998753
No 278
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.00 E-value=1.4e-09 Score=64.59 Aligned_cols=38 Identities=37% Similarity=0.866 Sum_probs=35.9
Q ss_pred eEeeccccccccEEEEEeeCCCCeEEEEcCCCcEEEEE
Q 016974 58 VCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWN 95 (379)
Q Consensus 58 ~~~~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd 95 (379)
.+..+|.+|.+.|++|+|+|++++|+||+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46678999999999999999999999999999999997
No 279
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.98 E-value=5.2e-08 Score=90.65 Aligned_cols=249 Identities=12% Similarity=0.174 Sum_probs=153.9
Q ss_pred cceeEeeccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEee--cCCcceEEEEECCCCCEEEEeeCCCc
Q 016974 55 TDLVCCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK--LPCAWVMTCAFSPTGQSVACGGLDSV 132 (379)
Q Consensus 55 ~~~~~~~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~g~~l~~~~~d~~ 132 (379)
..+..-.+|.||+..|.-+.|+...+.|-|...+|-|.+|-+..+.-...+. -...-|.+++|+.+|+.++..-.||.
T Consensus 59 snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGa 138 (1189)
T KOG2041|consen 59 SNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGA 138 (1189)
T ss_pred cccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCC
Confidence 3445556899999999999999999999999999999999987765332221 12345789999999999999999998
Q ss_pred EEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCC-------ee-EEEecCccccC
Q 016974 133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-------LR-TSVFGGEFQSG 204 (379)
Q Consensus 133 i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-------~~-~~~~~~~~~~~ 204 (379)
|.+=.++.... .-+.+.|. ....+.|+++. ..++.+-..|.+.++|.... .+ +...+.....+
T Consensus 139 vIVGsvdGNRI------wgKeLkg~--~l~hv~ws~D~-~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~ 209 (1189)
T KOG2041|consen 139 VIVGSVDGNRI------WGKELKGQ--LLAHVLWSEDL-EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFP 209 (1189)
T ss_pred EEEEeecccee------cchhcchh--eccceeecccH-HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCC
Confidence 87766654221 00112211 12357899875 46777788899999986532 11 11111000112
Q ss_pred CccCeEEEEE-------eCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCC-----
Q 016974 205 HTADVLSVSI-------SGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG----- 272 (379)
Q Consensus 205 h~~~v~~~~~-------~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~----- 272 (379)
| .+..+.| .+++...|+.+-.+|.+.+-.-.+...++-. .-.-.|..+.|+|+|..||.++.|.
T Consensus 210 ~--kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~--dtgm~~vgakWnh~G~vLAvcG~~~da~~~ 285 (1189)
T KOG2041|consen 210 T--KIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVV--DTGMKIVGAKWNHNGAVLAVCGNDSDADEP 285 (1189)
T ss_pred c--cccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEE--ecccEeecceecCCCcEEEEccCcccccCc
Confidence 2 1333333 2445667888888888877544433333322 2235788999999999999998753
Q ss_pred ----eEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEE
Q 016974 273 ----TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV 323 (379)
Q Consensus 273 ----~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~i 323 (379)
.|.++..- |+.+..+..+ ...|++++|-..|-.+|.+ .|+.|++
T Consensus 286 ~d~n~v~Fysp~-G~i~gtlkvp-----g~~It~lsWEg~gLriA~A-vdsfiyf 333 (1189)
T KOG2041|consen 286 TDSNKVHFYSPY-GHIVGTLKVP-----GSCITGLSWEGTGLRIAIA-VDSFIYF 333 (1189)
T ss_pred cccceEEEeccc-hhheEEEecC-----CceeeeeEEcCCceEEEEE-ecceEEE
Confidence 34444432 3333333221 2347777776666554433 3334433
No 280
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.95 E-value=2.5e-06 Score=86.37 Aligned_cols=298 Identities=14% Similarity=0.148 Sum_probs=171.6
Q ss_pred ccccEEEEEeeCCCCeEEEEcC---C---CcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeC---CCcEEEE
Q 016974 66 HAGKVYSLDWTSERNRIVSASQ---D---GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL---DSVCSIF 136 (379)
Q Consensus 66 H~~~v~~~~~~~~~~~l~s~s~---D---~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~---d~~i~iw 136 (379)
+.+.-..++|-.||.++|..+. + +.+|||+-+ |..-.+-....+--.+++|-|.|.+||+... ...|.+|
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFf 286 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFF 286 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEE
Confidence 5556678999999999987764 2 589999965 5433222222222356799999999998765 3445566
Q ss_pred EcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeC
Q 016974 137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG 216 (379)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 216 (379)
.-+.-.+ +++... +......|..+.|++++ ..|+..-.|. |.+|-..+-..-... +........+..+.|++
T Consensus 287 ErNGLrh--geF~l~--~~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~~NYHWYLKq--ei~~~~~~~~~~~~Wdp 358 (928)
T PF04762_consen 287 ERNGLRH--GEFTLR--FDPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTRSNYHWYLKQ--EIRFSSSESVNFVKWDP 358 (928)
T ss_pred ecCCcEe--eeEecC--CCCCCceeeEEEECCCC-CEEEEEecCC-ceEEEeeCCEEEEEE--EEEccCCCCCCceEECC
Confidence 5443221 121111 12334578899999975 4666655444 999987654211111 11122233344478888
Q ss_pred CCCcEEEEecCCCcEEEEEcc----CCc-------cce------------------------EEEecccCCeeEEEEccC
Q 016974 217 SNSRMFVSGSCDSTARLWDTR----VAS-------RAV------------------------RTFHGHEGDVNTVKFFPD 261 (379)
Q Consensus 217 ~~~~~l~sg~~d~~i~vwd~~----~~~-------~~~------------------------~~~~~h~~~v~~v~~sp~ 261 (379)
.+...|...+.+|.+..+++. ... ..+ ..+ .-..+|.+++|+++
T Consensus 359 e~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l-~~~~~v~~vaf~~~ 437 (928)
T PF04762_consen 359 EKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYEL-ELPSPVNDVAFSPS 437 (928)
T ss_pred CCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEE-cCCCCcEEEEEeCC
Confidence 777777777766666555432 000 001 111 12467999999999
Q ss_pred CCEEEEeeCCCeEEEEECCCCcee--------EEEee-----ccCCCCCCCeEEEEEccCCCEEEEEEec---CcEEEEe
Q 016974 262 GNRFGTGSDDGTCRLFDIRTGHQL--------QVYYQ-----QHGENEIPHVTSIAFSISGRLLFAGYSN---GDCYVWD 325 (379)
Q Consensus 262 g~~l~s~s~D~~i~iwd~~~~~~~--------~~~~~-----~~~~~~~~~v~~~~fs~~g~~l~sg~~d---g~i~iwd 325 (379)
+..+++-..||+|.+|........ ..+.. .........+..++|..+..+++....+ ..+.+++
T Consensus 438 ~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 517 (928)
T PF04762_consen 438 NSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVD 517 (928)
T ss_pred CCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEE
Confidence 988999999999999885432111 01100 0111123347788888888777666554 5778887
Q ss_pred CCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 326 TLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 326 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
....+........ ..-.+.+..+...++...++.-..||.|...+.++
T Consensus 518 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~ 565 (928)
T PF04762_consen 518 IDDSENSASVESS-TEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDG 565 (928)
T ss_pred eccCCCceeEEEE-eccCceEEEEeeCCCCcEEEEEECCCEEEEeecCC
Confidence 6322211111101 12244555555556555466667788887554443
No 281
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.95 E-value=1.5e-08 Score=88.17 Aligned_cols=147 Identities=13% Similarity=0.231 Sum_probs=94.6
Q ss_pred CCcEEEEecCCCcEEEEEccCCccceEEEe--cccCCeeEEEEccCCCE---EEEeeCCCeEEEEECCCCceeEEEeecc
Q 016974 218 NSRMFVSGSCDSTARLWDTRVASRAVRTFH--GHEGDVNTVKFFPDGNR---FGTGSDDGTCRLFDIRTGHQLQVYYQQH 292 (379)
Q Consensus 218 ~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~--~h~~~v~~v~~sp~g~~---l~s~s~D~~i~iwd~~~~~~~~~~~~~~ 292 (379)
.+++++.+..++...+++++...+..+-+. .-...-+++.|..+... ...+++...+.+|....+.....
T Consensus 73 ~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~----- 147 (390)
T KOG3914|consen 73 SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPI----- 147 (390)
T ss_pred CceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchh-----
Confidence 566777777777766777654432111111 11122233444333333 33345566677776654433222
Q ss_pred CCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEec
Q 016974 293 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 372 (379)
Q Consensus 293 ~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~ 372 (379)
-+|...++.++++||+++|++++.|+.|++=.......+ ..+--||+..|..++.-+ ++.|+|||.|++|++|++
T Consensus 148 -lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~I---esfclGH~eFVS~isl~~-~~~LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 148 -LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVI---ESFCLGHKEFVSTISLTD-NYLLLSGSGDKTLRLWDI 222 (390)
T ss_pred -hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccch---hhhccccHhheeeeeecc-CceeeecCCCCcEEEEec
Confidence 224456899999999999999999999998654433332 334468999999999875 566999999999999998
Q ss_pred Cc
Q 016974 373 GG 374 (379)
Q Consensus 373 ~~ 374 (379)
..
T Consensus 223 ~s 224 (390)
T KOG3914|consen 223 TS 224 (390)
T ss_pred cc
Confidence 76
No 282
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.94 E-value=4.7e-09 Score=89.46 Aligned_cols=177 Identities=14% Similarity=0.227 Sum_probs=121.2
Q ss_pred EEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCC----
Q 016974 164 CQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA---- 239 (379)
Q Consensus 164 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~---- 239 (379)
|+|+-....+-++.+.+..|-+-|+++|..... .....|.++.|.. ..++++.|+.+|.|...|++..
T Consensus 217 CawSlni~gyhfs~G~sqqv~L~nvetg~~qsf-------~sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~ 288 (425)
T KOG2695|consen 217 CAWSLNIMGYHFSVGLSQQVLLTNVETGHQQSF-------QSKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGN 288 (425)
T ss_pred hhhhhccceeeecccccceeEEEEeeccccccc-------ccchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCC
Confidence 466543333336677888898999888753221 2456788888875 4568889999999999999854
Q ss_pred ccceEEEecccCCeeEEEEcc-CCCEEEEeeCCCeEEEEECCCCce---eEEEeeccCCCCCCCeEEEEEccCCCEEEEE
Q 016974 240 SRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQ---LQVYYQQHGENEIPHVTSIAFSISGRLLFAG 315 (379)
Q Consensus 240 ~~~~~~~~~h~~~v~~v~~sp-~g~~l~s~s~D~~i~iwd~~~~~~---~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg 315 (379)
..+...+ -|...|+++..-. ++++|++.+.+|+|++||++.-+. +..+.. |...+ .-.-+-..+....|+++
T Consensus 289 ~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeG-HvN~~--a~l~~~v~~eeg~I~s~ 364 (425)
T KOG2695|consen 289 GWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEG-HVNLS--AYLPAHVKEEEGSIFSV 364 (425)
T ss_pred CcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeec-ccccc--cccccccccccceEEEc
Confidence 2233333 4889999998876 788999999999999999987555 444432 22211 11233456677789999
Q ss_pred EecCcEEEEeCCCceEEEecccccCCccCceeEEEEC
Q 016974 316 YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 352 (379)
Q Consensus 316 ~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s 352 (379)
+.|...+||.+..+....++.......+.-+.+++|.
T Consensus 365 GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 365 GDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred cCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 9999999999988887776643323333345556654
No 283
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.94 E-value=1.2e-06 Score=78.71 Aligned_cols=278 Identities=13% Similarity=0.099 Sum_probs=162.6
Q ss_pred ccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCC--------------
Q 016974 66 HAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDS-------------- 131 (379)
Q Consensus 66 H~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~-------------- 131 (379)
-.-++..+.|||.|.+|++....+ |.+|+......+..+.. ..|.-+.|+|.++||.+=+...
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~~--~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~ 107 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFRH--PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK 107 (561)
T ss_pred cCcchhheeecCcchheehhhccc-eEEccccchhheeeeec--CCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence 444688899999999998766654 99999776665544443 4588899999999999855433
Q ss_pred -cEEEEEcCCCCCCCCCcceeeeecccccc--eE-EEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCcc
Q 016974 132 -VCSIFNLNSPTDKDGNLPVSRMLSGHKGY--VS-CCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA 207 (379)
Q Consensus 132 -~i~iw~~~~~~~~~~~~~~~~~~~~h~~~--v~-~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~ 207 (379)
.+.+||+.+.. +...+.+-... .. -+.|+-++ .+++-- -...+.++++ ++... . ..+..-...
T Consensus 108 n~~~vwd~~sg~-------iv~sf~~~~q~~~~Wp~~k~s~~D-~y~ARv-v~~sl~i~e~-t~n~~-~--~p~~~lr~~ 174 (561)
T COG5354 108 NNVFVWDIASGM-------IVFSFNGISQPYLGWPVLKFSIDD-KYVARV-VGSSLYIHEI-TDNIE-E--HPFKNLRPV 174 (561)
T ss_pred CceeEEeccCce-------eEeeccccCCcccccceeeeeecc-hhhhhh-ccCeEEEEec-CCccc-c--Cchhhcccc
Confidence 48889886532 22222222211 22 35676654 333322 3356888887 33211 0 011111124
Q ss_pred CeEEEEEeCC-CCcEEEE-----ecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEee-----------C
Q 016974 208 DVLSVSISGS-NSRMFVS-----GSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-----------D 270 (379)
Q Consensus 208 ~v~~~~~~~~-~~~~l~s-----g~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s-----------~ 270 (379)
.+....++|. +...|+. .+.++.+++|.+... ..+.+-.-....-..+.|++.|++|..-- .
T Consensus 175 gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~-s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfg 253 (561)
T COG5354 175 GILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKN-SVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFG 253 (561)
T ss_pred ceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCC-CeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceec
Confidence 4666677764 3333332 567788999998744 22222111122235678889888875321 1
Q ss_pred CCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEE--EEecCcEEEEeCCCceEEEecccccCCccCceeE
Q 016974 271 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA--GYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITC 348 (379)
Q Consensus 271 D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~s--g~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~ 348 (379)
...+.|++++.. .+.... ...++|...+|+|.++-+++ |..+..+.++|+... ....+ ..+.-+.
T Consensus 254 esnLyl~~~~e~-~i~V~~-----~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~------Pe~~rNT 320 (561)
T COG5354 254 ESNLYLLRITER-SIPVEK-----DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF------PEQKRNT 320 (561)
T ss_pred cceEEEEeeccc-ccceec-----cccccceeeeecccCCceeEEecccccceeecccccc-eEEec------CCccccc
Confidence 235667776532 222111 12357899999998875544 557788999997643 32221 2233345
Q ss_pred EEECCCCCeEEEeeCCC---cEEEEecC
Q 016974 349 LGLSADGSALCTGSWDT---NLKIWAFG 373 (379)
Q Consensus 349 ~~~s~d~~~l~s~s~D~---~i~vw~~~ 373 (379)
+-|+|.+++++.++-|+ .|-+|+.-
T Consensus 321 ~~fsp~~r~il~agF~nl~gni~i~~~~ 348 (561)
T COG5354 321 IFFSPHERYILFAGFDNLQGNIEIFDPA 348 (561)
T ss_pred ccccCcccEEEEecCCccccceEEeccC
Confidence 56777777777777663 46666643
No 284
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.93 E-value=2.2e-08 Score=87.13 Aligned_cols=163 Identities=17% Similarity=0.238 Sum_probs=106.1
Q ss_pred EEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEE--EeeCCCeEEEeecCCC
Q 016974 114 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLI--TSSGDQTCVLWDITTG 191 (379)
Q Consensus 114 ~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~--s~~~d~~i~~wd~~~~ 191 (379)
.+..+|.++++|++..++...++++..... . .........- ..-+++.|..+....++ .++....+.+|....+
T Consensus 67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~-~--~kl~~~~~v~-~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 67 LVLTSDSGRLVAVATSSKQRAVFDYRENPK-G--AKLLDVSCVP-KRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred ccccCCCceEEEEEeCCCceEEEEEecCCC-c--ceeeeEeecc-cCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 345688899999999888887888765332 1 1111111111 11123333333322222 3444556666665543
Q ss_pred eeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCC
Q 016974 192 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD 271 (379)
Q Consensus 192 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D 271 (379)
..... .+|-.-++.+++++ +++.++++..|..||+-..........-.-||+.-|..++.-+ ++.|+|+|.|
T Consensus 143 ~~~~~------lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~LlS~sGD 214 (390)
T KOG3914|consen 143 RCEPI------LGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYLLLSGSGD 214 (390)
T ss_pred Ccchh------hhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-CceeeecCCC
Confidence 32222 48889999999997 6689999999999998765533222223458999999999875 4569999999
Q ss_pred CeEEEEECCCCceeEEE
Q 016974 272 GTCRLFDIRTGHQLQVY 288 (379)
Q Consensus 272 ~~i~iwd~~~~~~~~~~ 288 (379)
+++++||+++|+.+..+
T Consensus 215 ~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 215 KTLRLWDITSGKLLDTC 231 (390)
T ss_pred CcEEEEecccCCccccc
Confidence 99999999999877544
No 285
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.93 E-value=2.1e-06 Score=79.69 Aligned_cols=193 Identities=17% Similarity=0.185 Sum_probs=117.4
Q ss_pred ceEEEEEecCCCceEEEeeC---CCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCC--cEEEE
Q 016974 160 YVSCCQYVPDEDTHLITSSG---DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS--TARLW 234 (379)
Q Consensus 160 ~v~~~~~~~~~~~~l~s~~~---d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~--~i~vw 234 (379)
....-.|+|++...++..+. +..|.++|+.++....... .........|+|.+..++++.+.++ .|.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~------~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~ 262 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS------SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLY 262 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec------CCCcEEeeEECCCCCEEEEEEccCCCcEEEEE
Confidence 56678999997653443222 4568889998886554431 2233445678885556666665554 46666
Q ss_pred EccCCccceEEEecccCCeeEEEEccCCCEEEEeeCC-C--eEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCE
Q 016974 235 DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD-G--TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL 311 (379)
Q Consensus 235 d~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~ 311 (379)
|+... ....+..+........|+|||+.|+-.++. + .|.+.|+.+++....... +. ....|||+|++
T Consensus 263 dl~~g--~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~--g~------~~~~~SPDG~~ 332 (419)
T PRK04043 263 DTNTK--TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH--GK------NNSSVSTYKNY 332 (419)
T ss_pred ECCCC--cEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC--CC------cCceECCCCCE
Confidence 76533 233444344333456899999988776642 3 577888887765333321 11 12389999998
Q ss_pred EEEEEec---------CcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCC-c--EEEEecCc
Q 016974 312 LFAGYSN---------GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT-N--LKIWAFGG 374 (379)
Q Consensus 312 l~sg~~d---------g~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~-~--i~vw~~~~ 374 (379)
|+..... ..|++.|+.++... .+.. . +......|+|||+.|+-.+.++ . +.+.++++
T Consensus 333 Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~--~---~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 333 IVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTA--N---GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred EEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCC--C---CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 8776543 26788887766543 2311 1 1223578999999887665543 3 55666665
No 286
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=9.7e-07 Score=80.19 Aligned_cols=234 Identities=17% Similarity=0.196 Sum_probs=147.3
Q ss_pred EEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCC--EEEE-----eeCCCcEEEEEcCCCCC
Q 016974 71 YSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ--SVAC-----GGLDSVCSIFNLNSPTD 143 (379)
Q Consensus 71 ~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~--~l~~-----~~~d~~i~iw~~~~~~~ 143 (379)
++..|+.|..+.+ ==..+.|.+|+.... ....-+++...+....+||.+. .+|+ .|.=..++||.......
T Consensus 129 W~~qfs~dEsl~a-rlv~nev~f~~~~~f-~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~ 206 (566)
T KOG2315|consen 129 WVPQFSIDESLAA-RLVSNEVQFYDLGSF-KTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ 206 (566)
T ss_pred cccccccchhhhh-hhhcceEEEEecCCc-cceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc
Confidence 6788888765432 223456999998763 3333445566678888888743 4443 45667789997652110
Q ss_pred CCCCcceeeeecccccceEEEEEecCCCceEEEeeC-----------CCeEEEeecCCCeeEEEecCccccCCccCeEEE
Q 016974 144 KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-----------DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV 212 (379)
Q Consensus 144 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-----------d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~ 212 (379)
.+....+++. ..+.| .+.|.+.+..+|+-++. ..++.+.++....+... ....++|.++
T Consensus 207 --~~~~a~ksFF-kadkv-qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~------L~k~GPVhdv 276 (566)
T KOG2315|consen 207 --HQPVANKSFF-KADKV-QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVP------LLKEGPVHDV 276 (566)
T ss_pred --cchhhhcccc-cccee-EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEe------cCCCCCceEE
Confidence 0000111221 12223 34676655555544332 24577777663332222 2346789999
Q ss_pred EEeCCCCcEEEE-ecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCC---CeEEEEECCCCceeEEE
Q 016974 213 SISGSNSRMFVS-GSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD---GTCRLFDIRTGHQLQVY 288 (379)
Q Consensus 213 ~~~~~~~~~l~s-g~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D---~~i~iwd~~~~~~~~~~ 288 (379)
.|+++...+.+. |=+=..+.|+|++- .++..+ -+++=+++-|+|.|++|+.++-+ |.+-|||+.+.+.+..+
T Consensus 277 ~W~~s~~EF~VvyGfMPAkvtifnlr~--~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~ 352 (566)
T KOG2315|consen 277 TWSPSGREFAVVYGFMPAKVTIFNLRG--KPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKF 352 (566)
T ss_pred EECCCCCEEEEEEecccceEEEEcCCC--CEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccc
Confidence 999865444433 33556789999872 344444 36778999999999999988764 68999999987666544
Q ss_pred eeccCCCCCCCeEEEEEccCCCEEEEEEe------cCcEEEEeCC
Q 016974 289 YQQHGENEIPHVTSIAFSISGRLLFAGYS------NGDCYVWDTL 327 (379)
Q Consensus 289 ~~~~~~~~~~~v~~~~fs~~g~~l~sg~~------dg~i~iwd~~ 327 (379)
. ...-+-+.|+|||++++++.. |..++||+..
T Consensus 353 ~-------a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 353 K-------AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred c-------cCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 2 233567899999999999864 6789999964
No 287
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.91 E-value=7.1e-08 Score=81.35 Aligned_cols=254 Identities=15% Similarity=0.235 Sum_probs=156.5
Q ss_pred cccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCc-e----eeEeecCC------------cceEEEEECCC-C-CEEEEe
Q 016974 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQ-K----THAIKLPC------------AWVMTCAFSPT-G-QSVACG 127 (379)
Q Consensus 67 ~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~-~----~~~~~~~~------------~~v~~~~~s~~-g-~~l~~~ 127 (379)
.+.|++|.|...|.+|++|...|.|-++.-.... + ...+..|. ..|..+.|-.+ | ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4569999999999999999999999999755332 1 11122221 23566666443 3 356667
Q ss_pred eCCCcEEEEEcCCCC---------------CCCCCc--------c------------eeeee-cccccceEEEEEecCCC
Q 016974 128 GLDSVCSIFNLNSPT---------------DKDGNL--------P------------VSRML-SGHKGYVSCCQYVPDED 171 (379)
Q Consensus 128 ~~d~~i~iw~~~~~~---------------~~~~~~--------~------------~~~~~-~~h~~~v~~~~~~~~~~ 171 (379)
+.|++|++|.+.... ...|.. | ..+.. ..|.-.+.++.+..+.
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~- 184 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK- 184 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch-
Confidence 889999999986531 001100 0 01122 4577778888888764
Q ss_pred ceEEEeeCCCeEEEeecCCCeeEEEecCccccCC-----ccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCC-----cc
Q 016974 172 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGH-----TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA-----SR 241 (379)
Q Consensus 172 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~-----~~ 241 (379)
..+++ +.|=.|.+|++.-.-....+. .. .+| ..-|++..|+|...+.|.-.+..|.|++-|+|.. .+
T Consensus 185 et~lS-aDdLrINLWnl~i~D~sFnIV-Di-KP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~ 261 (460)
T COG5170 185 ETLLS-ADDLRINLWNLEIIDGSFNIV-DI-KPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSK 261 (460)
T ss_pred heeee-ccceeeeeccccccCCceEEE-ec-cCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCch
Confidence 34444 567889999875321111100 00 122 2336677788877788888888999999999832 11
Q ss_pred ceE----------EEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCc-eeEEEeecc---------CCCC-CCCe
Q 016974 242 AVR----------TFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH-QLQVYYQQH---------GENE-IPHV 300 (379)
Q Consensus 242 ~~~----------~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~-~~~~~~~~~---------~~~~-~~~v 300 (379)
.+. .+.+-...|..+.|+++|+|+++-.. -+++|||++..+ ++.+..-.. -++. ...-
T Consensus 262 klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdk 340 (460)
T COG5170 262 KLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDK 340 (460)
T ss_pred hhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeee
Confidence 111 11222346888999999999987544 589999998654 233321000 0000 0112
Q ss_pred EEEEEccCCCEEEEEEecCcEEEEe
Q 016974 301 TSIAFSISGRLLFAGYSNGDCYVWD 325 (379)
Q Consensus 301 ~~~~fs~~g~~l~sg~~dg~i~iwd 325 (379)
..+.||.|.+.+.+|+.....-++-
T Consensus 341 FeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 341 FEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred EEEEecCCcccccccccccceeeec
Confidence 4678999999999998877776765
No 288
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.90 E-value=1.8e-05 Score=70.85 Aligned_cols=146 Identities=16% Similarity=0.177 Sum_probs=108.4
Q ss_pred eCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCC-eEEEEECCCCceeEEEeeccC
Q 016974 215 SGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG-TCRLFDIRTGHQLQVYYQQHG 293 (379)
Q Consensus 215 ~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~-~i~iwd~~~~~~~~~~~~~~~ 293 (379)
+..++.+++..|.. ...+.+.... ..+ --+|.+.|.-..+.-++..++.|..|| .+-|+|..+++. +.+.
T Consensus 328 a~~~Gd~ia~VSRG-kaFi~~~~~~-~~i--qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e---- 398 (668)
T COG4946 328 AVVNGDYIALVSRG-KAFIMRPWDG-YSI--QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIE---- 398 (668)
T ss_pred ccCCCcEEEEEecC-cEEEECCCCC-eeE--EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEee----
Confidence 34466677766653 3334332211 122 236778898888888888899999999 899999987753 2322
Q ss_pred CCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCC----cEEE
Q 016974 294 ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT----NLKI 369 (379)
Q Consensus 294 ~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~----~i~v 369 (379)
...+.|.++..+|+|++++.+.....|.+.|+.+++....- +...+-|+.++|+|++.++|-+--+| .|++
T Consensus 399 -~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~id----kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Ikl 473 (668)
T COG4946 399 -KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLID----KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKL 473 (668)
T ss_pred -CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEec----ccccceeEEEEEcCCceeEEEecCcceeeeeEEE
Confidence 23456999999999999999999999999999988765433 45567899999999999999877665 5899
Q ss_pred EecCc
Q 016974 370 WAFGG 374 (379)
Q Consensus 370 w~~~~ 374 (379)
+++.+
T Consensus 474 ydm~~ 478 (668)
T COG4946 474 YDMDG 478 (668)
T ss_pred EecCC
Confidence 98765
No 289
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.88 E-value=7.7e-09 Score=61.35 Aligned_cols=38 Identities=47% Similarity=0.941 Sum_probs=35.7
Q ss_pred cceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEE
Q 016974 241 RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD 278 (379)
Q Consensus 241 ~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd 278 (379)
+++.++.+|.+.|++++|+|++.+|++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 35678999999999999999999999999999999997
No 290
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.87 E-value=1.8e-06 Score=72.43 Aligned_cols=200 Identities=12% Similarity=0.113 Sum_probs=110.3
Q ss_pred EEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCC-------cceEEEEECCC------CCEEEEeeCCCcEEEE
Q 016974 70 VYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPC-------AWVMTCAFSPT------GQSVACGGLDSVCSIF 136 (379)
Q Consensus 70 v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-------~~v~~~~~s~~------g~~l~~~~~d~~i~iw 136 (379)
-.-++||||+..||.+...|+|+++|+.. ..+..+.... ..|-.+.|-+. ...|++...+|.++-|
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 35689999999999999999999999874 4444443221 23444555432 2357777888888877
Q ss_pred EcCCCCCCCCCcceeeeecc-cccceEEEEEecCCCceEEEeeC-CCeEEEeecCCCeeEEEecCccccCCccCeEEEEE
Q 016974 137 NLNSPTDKDGNLPVSRMLSG-HKGYVSCCQYVPDEDTHLITSSG-DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSI 214 (379)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~ 214 (379)
-+........+......+.. +...|.++.|+|.- ++|+.|+. ...-..+. +....+++..+
T Consensus 125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h-~LLlVgG~~~~~~~~s~----------------a~~~GLtaWRi 187 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH-RLLLVGGCEQNQDGMSK----------------ASSCGLTAWRI 187 (282)
T ss_pred EEEcccCCcceeeEEEEecccCCCceeEEEEcCCC-CEEEEeccCCCCCcccc----------------ccccCceEEEE
Confidence 76432111111112222333 35678999999864 45555443 22110110 11112222222
Q ss_pred eCCCCcEEE-EecCCCc------EEEEEccCCccceEEEec-ccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeE
Q 016974 215 SGSNSRMFV-SGSCDST------ARLWDTRVASRAVRTFHG-HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ 286 (379)
Q Consensus 215 ~~~~~~~l~-sg~~d~~------i~vwd~~~~~~~~~~~~~-h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~ 286 (379)
......+.. +...|+. -.+|.+-+ ......++ ....|..|..||||..||+...+|.|.+|++...++..
T Consensus 188 L~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~--~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~ 265 (282)
T PF15492_consen 188 LSDSPYYKQVTSSEDDITASSKRRGLLRIPS--FKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQR 265 (282)
T ss_pred cCCCCcEEEccccCccccccccccceeeccc--eeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhc
Confidence 211111111 1111111 12222211 01111111 34679999999999999999999999999998766655
Q ss_pred EEe
Q 016974 287 VYY 289 (379)
Q Consensus 287 ~~~ 289 (379)
.+.
T Consensus 266 ~W~ 268 (282)
T PF15492_consen 266 SWK 268 (282)
T ss_pred ccc
Confidence 543
No 291
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.86 E-value=5e-06 Score=77.25 Aligned_cols=212 Identities=10% Similarity=0.021 Sum_probs=118.3
Q ss_pred cEEEEECCCCceeeEeecCCcceEEEEECCCCCE-EEEeeCC---CcEEEEEcCCCCCCCCCcceeeeecccccceEEEE
Q 016974 90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQS-VACGGLD---SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQ 165 (379)
Q Consensus 90 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 165 (379)
.|.+-|.. |...+.+.... ....-.|+|+|+. ++..+.+ ..|.++|+.+.. . +.+....+.+....
T Consensus 170 ~l~~~d~d-g~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~-----~---~~lt~~~g~~~~~~ 239 (419)
T PRK04043 170 NIVLADYT-LTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK-----K---EKIASSQGMLVVSD 239 (419)
T ss_pred eEEEECCC-CCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCc-----E---EEEecCCCcEEeeE
Confidence 44444432 33333333333 5677899999984 6655444 457777765421 1 12222344455678
Q ss_pred EecCCCceEEEeeCC--CeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCc--EEEEEccCCcc
Q 016974 166 YVPDEDTHLITSSGD--QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST--ARLWDTRVASR 241 (379)
Q Consensus 166 ~~~~~~~~l~s~~~d--~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~--i~vwd~~~~~~ 241 (379)
|+|++...+++.+.+ ..|.++|+.++...... .+........|+|.+..++++....+. |.+.|+... .
T Consensus 240 ~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT------~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g-~ 312 (419)
T PRK04043 240 VSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQIT------NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG-S 312 (419)
T ss_pred ECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcc------cCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCC-C
Confidence 999987666665544 45777788776533221 111112334688765566666655554 555566533 2
Q ss_pred ceEEEecccCCeeEEEEccCCCEEEEeeCC---------CeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEE
Q 016974 242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDD---------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL 312 (379)
Q Consensus 242 ~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l 312 (379)
..+... .... ...|+|||++|+..+.. ..|.+.|+.++...... . .. ......|+|||++|
T Consensus 313 ~~rlt~-~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT-~-~~-----~~~~p~~SPDG~~I 382 (419)
T PRK04043 313 VEQVVF-HGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLT-A-NG-----VNQFPRFSSDGGSI 382 (419)
T ss_pred eEeCcc-CCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECC-C-CC-----CcCCeEECCCCCEE
Confidence 212111 1111 24899999998877653 25788888877643322 1 11 12247899999988
Q ss_pred EEEEecC---cEEEEeCCC
Q 016974 313 FAGYSNG---DCYVWDTLL 328 (379)
Q Consensus 313 ~sg~~dg---~i~iwd~~~ 328 (379)
+-...++ .+.+.++..
T Consensus 383 ~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 383 MFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred EEEEccCCcEEEEEEecCC
Confidence 7665433 355666543
No 292
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.85 E-value=2e-08 Score=93.56 Aligned_cols=214 Identities=17% Similarity=0.237 Sum_probs=138.4
Q ss_pred eeccccccccEEEEEeeCCC-CeEEEEcCCCcEEEEECCCCcee-eEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEE
Q 016974 60 CRTLQGHAGKVYSLDWTSER-NRIVSASQDGRLIVWNALTSQKT-HAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFN 137 (379)
Q Consensus 60 ~~~l~gH~~~v~~~~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~ 137 (379)
...+.||...|+.+-|+|+. ..|++++.|-.|..||+...... .....-......++|+.....+...+..+.|.+||
T Consensus 107 ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd 186 (1081)
T KOG0309|consen 107 EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWD 186 (1081)
T ss_pred EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEe
Confidence 34688999999999999865 46899999999999998765433 22222223356678887666666667777899999
Q ss_pred cCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEE--ecCcc-----ccCCccCeE
Q 016974 138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSV--FGGEF-----QSGHTADVL 210 (379)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~--~~~~~-----~~~h~~~v~ 210 (379)
++.+. . ....+++|...|..+.|.......+.+.+.|++|+.||......... ....+ .....+.-.
T Consensus 187 ~r~gs-----~-pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~ 260 (1081)
T KOG0309|consen 187 LRKGS-----T-PLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGY 260 (1081)
T ss_pred ccCCC-----c-ceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCcee
Confidence 87543 1 34567788888888888765556689999999999999764321100 00000 000001111
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccC----C------CEEEEeeCCCeEEEEECC
Q 016974 211 SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD----G------NRFGTGSDDGTCRLFDIR 280 (379)
Q Consensus 211 ~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~----g------~~l~s~s~D~~i~iwd~~ 280 (379)
++-+.. +++.+.---.+.....|+..+..+++..|.||...|....|-.. | -.|++=|.|.++|+|-+.
T Consensus 261 ~~mp~~-G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 261 CIMPMV-GGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred Eecccc-CCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 221111 11222222233444556665566789999999998866655322 2 259999999999999764
No 293
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.84 E-value=5.7e-06 Score=69.55 Aligned_cols=239 Identities=15% Similarity=0.165 Sum_probs=126.5
Q ss_pred EEeeCCCCeEEEEcCCCcEEEEECCCCc--eee--E-eecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCC
Q 016974 73 LDWTSERNRIVSASQDGRLIVWNALTSQ--KTH--A-IKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN 147 (379)
Q Consensus 73 ~~~~~~~~~l~s~s~D~~v~iwd~~~~~--~~~--~-~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~ 147 (379)
++.+.+|+.||. -.|..|-|=...+.- .+. + .+.+.-.-..++||||+..||.+...|+|+++|+....-- .
T Consensus 3 ~~~~~~Gk~lAi-~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf--~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAI-LQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF--V 79 (282)
T ss_pred eeecCCCcEEEE-EeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeE--E
Confidence 455677777664 456666665544321 111 1 1222223467899999999999999999999998742100 0
Q ss_pred cceeeeec-ccccceEEEEEecCC-----CceEEEeeCCCeEEEeecCCC-----eeEEEecCccccCCccCeEEEEEeC
Q 016974 148 LPVSRMLS-GHKGYVSCCQYVPDE-----DTHLITSSGDQTCVLWDITTG-----LRTSVFGGEFQSGHTADVLSVSISG 216 (379)
Q Consensus 148 ~~~~~~~~-~h~~~v~~~~~~~~~-----~~~l~s~~~d~~i~~wd~~~~-----~~~~~~~~~~~~~h~~~v~~~~~~~ 216 (379)
.+...... .-..+|..+.|.+.. ...|+.-..+|.++-|-+..+ .....+ .+...+...|.++.+++
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsf--sf~~~yp~Gi~~~vy~p 157 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSF--SFSSHYPHGINSAVYHP 157 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEE--EecccCCCceeEEEEcC
Confidence 01111111 123456666665422 234667778888877765322 111122 12234456889999998
Q ss_pred CCCcEEEEecC-CCcEEEEEccCCccceEEEecccCCeeEEEE---ccCCCEEEEeeCCCe------EEEEECCCCceeE
Q 016974 217 SNSRMFVSGSC-DSTARLWDTRVASRAVRTFHGHEGDVNTVKF---FPDGNRFGTGSDDGT------CRLFDIRTGHQLQ 286 (379)
Q Consensus 217 ~~~~~l~sg~~-d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~---sp~g~~l~s~s~D~~------i~iwd~~~~~~~~ 286 (379)
.. ++|+.|+. ...-..+. +-...+++=.. +|... .++...|+. ..+|.+-+. .
T Consensus 158 ~h-~LLlVgG~~~~~~~~s~------------a~~~GLtaWRiL~~~Pyyk-~v~~~~~~~~~~~~~~~~~~~~~~---~ 220 (282)
T PF15492_consen 158 KH-RLLLVGGCEQNQDGMSK------------ASSCGLTAWRILSDSPYYK-QVTSSEDDITASSKRRGLLRIPSF---K 220 (282)
T ss_pred CC-CEEEEeccCCCCCcccc------------ccccCceEEEEcCCCCcEE-EccccCccccccccccceeeccce---e
Confidence 55 45555543 32110110 11111211111 12111 122222222 123332221 1
Q ss_pred EEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEec
Q 016974 287 VYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL 335 (379)
Q Consensus 287 ~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~ 335 (379)
.+.. . ......|..+..||||+.||+-..+|.|.+|++...+.....
T Consensus 221 ~fs~-~-~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W 267 (282)
T PF15492_consen 221 FFSR-Q-GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW 267 (282)
T ss_pred eeec-c-ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence 1111 1 113456999999999999999999999999998766655443
No 294
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=1.2e-07 Score=83.80 Aligned_cols=260 Identities=18% Similarity=0.164 Sum_probs=168.1
Q ss_pred cccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCC---ceeeEeecCCcceEEEEECCCCCEEEEeeC-CCcEEEEEcCC
Q 016974 65 GHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTS---QKTHAIKLPCAWVMTCAFSPTGQSVACGGL-DSVCSIFNLNS 140 (379)
Q Consensus 65 gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-d~~i~iw~~~~ 140 (379)
-|++.|+.+.-+ ..+++.++|.||.++.|-...- +.+..+..|.+.+.+++.+.+|..+.+.+. |..++++|+.+
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 388888888654 4579999999999999975431 222334566777888889999999999888 99999999875
Q ss_pred CCCCCCCcceeeeecccccceEEEEEecCCCc-eE-EEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCC
Q 016974 141 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT-HL-ITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN 218 (379)
Q Consensus 141 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 218 (379)
..-.. ..+ +.--.+.+. +..++.+.. .+ ++.-.++.+.++|-....+... .+..-|..+|..+.+.+ .
T Consensus 86 ~Dmin----miK-L~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~---~fkklH~sPV~~i~y~q-a 155 (558)
T KOG0882|consen 86 FDMIN----MIK-LVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDG---YFKKLHFSPVKKIRYNQ-A 155 (558)
T ss_pred cchhh----hcc-cccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccc---eecccccCceEEEEeec-c
Confidence 32110 000 001111221 112222111 22 3344678899998765432211 12356888999998886 4
Q ss_pred CcEEEEecCCCcEEEEEccC----Ccc-ceE---------EEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCce
Q 016974 219 SRMFVSGSCDSTARLWDTRV----ASR-AVR---------TFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ 284 (379)
Q Consensus 219 ~~~l~sg~~d~~i~vwd~~~----~~~-~~~---------~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~ 284 (379)
+..+++....|.|.-|.... ++. ... .+..-.....++.|+|+|..+.+-+.|.+|++++.++|+.
T Consensus 156 ~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGkl 235 (558)
T KOG0882|consen 156 GDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKL 235 (558)
T ss_pred ccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchh
Confidence 55677888889999998652 111 111 1112234578999999999999999999999999999876
Q ss_pred eEEEeecc--------C--------------------CCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecc
Q 016974 285 LQVYYQQH--------G--------------------ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLG 336 (379)
Q Consensus 285 ~~~~~~~~--------~--------------------~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~ 336 (379)
++.+.... . ......-+.+.|+..|++|+-|+-=| |++.++.++.....++
T Consensus 236 vqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 236 VQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILG 314 (558)
T ss_pred hhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence 54431100 0 00111235688999999999887665 7788877777666554
No 295
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.79 E-value=1.2e-06 Score=72.61 Aligned_cols=184 Identities=10% Similarity=0.032 Sum_probs=118.1
Q ss_pred eEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceee-eeccccc
Q 016974 81 RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSR-MLSGHKG 159 (379)
Q Consensus 81 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~-~~~~h~~ 159 (379)
.+.-++.|.++++.++.-+.....+......+.+++++++++++++.+....|..|.++...+. ..+ ....-++
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey-----~~~~~~a~t~D 204 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEY-----IENIYEAPTSD 204 (344)
T ss_pred ceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccce-----eeeeEecccCC
Confidence 3556788999999988765544444433334788999999999999999999999999864322 122 2233344
Q ss_pred ceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCC-cEEEEecCCCcEEEEEccC
Q 016974 160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS-RMFVSGSCDSTARLWDTRV 238 (379)
Q Consensus 160 ~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~sg~~d~~i~vwd~~~ 238 (379)
.-.+..|+.. +..++++..||++.|||++.............+.|.+.+..+.|++.+. .+|+-.---+.+++-|+++
T Consensus 205 ~gF~~S~s~~-~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~ 283 (344)
T KOG4532|consen 205 HGFYNSFSEN-DLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN 283 (344)
T ss_pred CceeeeeccC-cceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc
Confidence 4567788865 4679999999999999998753332222223356888899998885322 2333333346799999987
Q ss_pred CccceEEE------eccc-CCeeEEEEccCCCEEEEeeC
Q 016974 239 ASRAVRTF------HGHE-GDVNTVKFFPDGNRFGTGSD 270 (379)
Q Consensus 239 ~~~~~~~~------~~h~-~~v~~v~~sp~g~~l~s~s~ 270 (379)
........ ..|. ..|....|+.++..+.+.++
T Consensus 284 ~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e 322 (344)
T KOG4532|consen 284 YVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNE 322 (344)
T ss_pred CceeeEEecCccccccccccccccccccCCCcccccccc
Confidence 64322211 1122 22555566655554444443
No 296
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=1.3e-05 Score=72.99 Aligned_cols=279 Identities=13% Similarity=0.150 Sum_probs=155.9
Q ss_pred EEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeC-----------CCcEEEEEcC
Q 016974 71 YSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL-----------DSVCSIFNLN 139 (379)
Q Consensus 71 ~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-----------d~~i~iw~~~ 139 (379)
+=+.|||-|.+|+|--.-| |.+|--..-...+.+. ...|.-+.|||..+||++=+. ...++|||+.
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~--Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY--HPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc--CCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 4588999999999877766 8999755444444332 345888999999999998553 2568999998
Q ss_pred CCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCC
Q 016974 140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 219 (379)
Q Consensus 140 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 219 (379)
++....+ .++ +.+....-.-..|+.++ .+++.-.. .+|.||+..+-..+ . ...-....|....|+|. +
T Consensus 291 tG~lkrs-F~~---~~~~~~~WP~frWS~Dd-Ky~Arm~~-~sisIyEtpsf~ll---d--~Kslki~gIr~FswsP~-~ 358 (698)
T KOG2314|consen 291 TGLLKRS-FPV---IKSPYLKWPIFRWSHDD-KYFARMTG-NSISIYETPSFMLL---D--KKSLKISGIRDFSWSPT-S 358 (698)
T ss_pred ccchhcc-eec---cCCCccccceEEeccCC-ceeEEecc-ceEEEEecCceeee---c--ccccCCccccCcccCCC-c
Confidence 7542211 111 01111112335788764 56665544 77889986552211 1 11223456777778874 3
Q ss_pred cEEEEec--CC---CcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeC----------CCeEEEEECCCCce
Q 016974 220 RMFVSGS--CD---STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD----------DGTCRLFDIRTGHQ 284 (379)
Q Consensus 220 ~~l~sg~--~d---~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~----------D~~i~iwd~~~~~~ 284 (379)
++||-=. .+ ..+.+-.+... +.+++-.-|+-.=..+.|-.+|.+|+.--+ =..+.|+.++....
T Consensus 359 ~llAYwtpe~~~~parvtL~evPs~-~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI 437 (698)
T KOG2314|consen 359 NLLAYWTPETNNIPARVTLMEVPSK-REIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI 437 (698)
T ss_pred ceEEEEcccccCCcceEEEEecCcc-ceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC
Confidence 4444211 11 12223333221 233333333323344667678888864321 11234444443221
Q ss_pred eEEEeeccCCCCCCCeEEEEEccCCCEEEEEEe---cCcEEEEeCCC-ceEEEecccccCCccCceeEEEECCCCCeEEE
Q 016974 285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS---NGDCYVWDTLL-AKVVLNLGSLQNSHEGRITCLGLSADGSALCT 360 (379)
Q Consensus 285 ~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~---dg~i~iwd~~~-~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s 360 (379)
..-... -...|...+|.|.|..+++-+. ..++.+|...+ .....-+..+.+ ...+.+-|+|.|++++.
T Consensus 438 -pve~ve----lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk---~~~N~vfwsPkG~fvvv 509 (698)
T KOG2314|consen 438 -PVEVVE----LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK---KFANTVFWSPKGRFVVV 509 (698)
T ss_pred -Cceeee----cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc---cccceEEEcCCCcEEEE
Confidence 111111 1124788899999987666432 34788887653 222222222222 34577889999999987
Q ss_pred e---eCCCcEEEEecC
Q 016974 361 G---SWDTNLKIWAFG 373 (379)
Q Consensus 361 ~---s~D~~i~vw~~~ 373 (379)
+ |..|.+..+|.+
T Consensus 510 a~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 510 AALVSRRGDLEFYDTD 525 (698)
T ss_pred EEecccccceEEEecc
Confidence 5 456888888865
No 297
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.73 E-value=0.00012 Score=63.20 Aligned_cols=226 Identities=17% Similarity=0.179 Sum_probs=133.4
Q ss_pred EEEECC-CCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCe
Q 016974 114 TCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 192 (379)
Q Consensus 114 ~~~~s~-~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 192 (379)
+.+|.+ ++.++.+--..+.|..|+..... ...... .. ...+.+...++ .|+.+...+. .++|+.++.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~--------~~~~~~-~~-~~G~~~~~~~g-~l~v~~~~~~-~~~d~~~g~ 71 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGE--------VEVIDL-PG-PNGMAFDRPDG-RLYVADSGGI-AVVDPDTGK 71 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTE--------EEEEES-SS-EEEEEEECTTS-EEEEEETTCE-EEEETTTTE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCe--------EEEEec-CC-CceEEEEccCC-EEEEEEcCce-EEEecCCCc
Confidence 356776 56666666667888888765421 111111 11 44556663333 4555555444 455988875
Q ss_pred eEEEecCccccCCccCeEEEEEeCCCCcEEEEecCC--------CcEEEEEccCCccceEEEecccCCeeEEEEccCCCE
Q 016974 193 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD--------STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNR 264 (379)
Q Consensus 193 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d--------~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~ 264 (379)
...................+.+.+ +++++++.... |.|..++.. .+ +..+...-...+.++|+|+++.
T Consensus 72 ~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~-~~~~~~~~~~pNGi~~s~dg~~ 147 (246)
T PF08450_consen 72 VTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD--GK-VTVVADGLGFPNGIAFSPDGKT 147 (246)
T ss_dssp EEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT--SE-EEEEEEEESSEEEEEEETTSSE
T ss_pred EEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC--Ce-EEEEecCcccccceEECCcchh
Confidence 444332211111345677888887 56777776543 345555554 22 2333334556789999999987
Q ss_pred EE-EeeCCCeEEEEECCCCce-e---EEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEeccccc
Q 016974 265 FG-TGSDDGTCRLFDIRTGHQ-L---QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ 339 (379)
Q Consensus 265 l~-s~s~D~~i~iwd~~~~~~-~---~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~ 339 (379)
|. +-+..+.|..+++..... + ..+... ....+..-.++++.+|++.++....+.|.++|.. ++....+..
T Consensus 148 lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~-- 222 (246)
T PF08450_consen 148 LYVADSFNGRIWRFDLDADGGELSNRRVFIDF--PGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIEL-- 222 (246)
T ss_dssp EEEEETTTTEEEEEEEETTTCCEEEEEEEEE---SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE---
T ss_pred eeecccccceeEEEeccccccceeeeeeEEEc--CCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcC--
Confidence 65 667888899999864322 2 122111 1111236789999999988888889999999976 766655421
Q ss_pred CCccCceeEEEE-CCCCCeEEEee
Q 016974 340 NSHEGRITCLGL-SADGSALCTGS 362 (379)
Q Consensus 340 ~~h~~~v~~~~~-s~d~~~l~s~s 362 (379)
+ ...+++++| .++.+.|...+
T Consensus 223 -p-~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 223 -P-VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp -S-SSSEEEEEEESTTSSEEEEEE
T ss_pred -C-CCCEEEEEEECCCCCEEEEEe
Confidence 2 337899999 57766666543
No 298
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.73 E-value=1.3e-08 Score=96.65 Aligned_cols=278 Identities=14% Similarity=0.227 Sum_probs=174.0
Q ss_pred EeeccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCC--CcEEEE
Q 016974 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD--SVCSIF 136 (379)
Q Consensus 59 ~~~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d--~~i~iw 136 (379)
..++|..|+...+|++|+.+.++|+.|+..|.|+++++.+|........|...++.+.-+.+|..+++.+.- ....+|
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHh
Confidence 456788899999999999999999999999999999999999999999999999999889999876665443 256789
Q ss_pred EcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEE-ecCccccCCccCeEEEEEe
Q 016974 137 NLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSV-FGGEFQSGHTADVLSVSIS 215 (379)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-~~~~~~~~h~~~v~~~~~~ 215 (379)
++.+... ..+.+. .-.++.|+... ..-+.|..-....+||+.++..... +.... +.+-.-....|+
T Consensus 1173 ~~~s~~~------~~Hsf~----ed~~vkFsn~~-q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~--~~~y~~n~a~Fs 1239 (1516)
T KOG1832|consen 1173 DASSTGG------PRHSFD----EDKAVKFSNSL-QFRALGTEADDALLYDVQTCSPLQTYLTDTV--TSSYSNNLAHFS 1239 (1516)
T ss_pred ccccccC------cccccc----ccceeehhhhH-HHHHhcccccceEEEecccCcHHHHhcCcch--hhhhhccccccC
Confidence 8865221 112221 23456776542 2223344446678999998754433 21111 111112445677
Q ss_pred CCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCC
Q 016974 216 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN 295 (379)
Q Consensus 216 ~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~ 295 (379)
|.+ .+++ .|| -+||++.. +.++.|...+..+. =.|+|.|..++.-+. |||+++-+.+.....
T Consensus 1240 P~D-~LIl---ndG--vLWDvR~~-~aIh~FD~ft~~~~-G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~----- 1301 (1516)
T KOG1832|consen 1240 PCD-TLIL---NDG--VLWDVRIP-EAIHRFDQFTDYGG-GGFHPSGNEVIINSE-----IWDMRTFKLLHSVPS----- 1301 (1516)
T ss_pred CCc-ceEe---eCc--eeeeeccH-HHHhhhhhheeccc-ccccCCCceEEeech-----hhhhHHHHHHhcCcc-----
Confidence 644 3443 344 37999866 55655554432222 368999999887664 899998765543211
Q ss_pred CCCCeEEEEEccCCCEEEEEE--ec---------------CcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeE
Q 016974 296 EIPHVTSIAFSISGRLLFAGY--SN---------------GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSAL 358 (379)
Q Consensus 296 ~~~~v~~~~fs~~g~~l~sg~--~d---------------g~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l 358 (379)
. .-..+.|+..|..+++.- .| ...+-||....+.+.++. -..+|..++-+|...+|
T Consensus 1302 -L-dqc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~-----v~R~~~Dlct~~~D~~l 1374 (1516)
T KOG1832|consen 1302 -L-DQCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIP-----VDRCLLDLCTEPTDSFL 1374 (1516)
T ss_pred -c-cceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeee-----cccchhhhhcCCccceE
Confidence 1 135788999888766542 11 112223333333333331 23467777778877777
Q ss_pred EEeeC---------CCcEEEEecCc
Q 016974 359 CTGSW---------DTNLKIWAFGG 374 (379)
Q Consensus 359 ~s~s~---------D~~i~vw~~~~ 374 (379)
+.--. +...|+|.++.
T Consensus 1375 ~vIe~~~~~d~dq~sT~~r~yEIGR 1399 (1516)
T KOG1832|consen 1375 GVIEMEDQEDMDQFSTSARMYEIGR 1399 (1516)
T ss_pred EEEeccChhhhhhhhhhhhhhhhcc
Confidence 75332 22567776665
No 299
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.70 E-value=6.3e-06 Score=73.69 Aligned_cols=145 Identities=19% Similarity=0.235 Sum_probs=107.6
Q ss_pred cCCccCeEEEEEeCCCCcEEEEecCCC-cEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCC
Q 016974 203 SGHTADVLSVSISGSNSRMFVSGSCDS-TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 281 (379)
Q Consensus 203 ~~h~~~v~~~~~~~~~~~~l~sg~~d~-~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~ 281 (379)
-+|...|.-..+.. +++-++.|..|| .+-++|.+.. .+..+.+.-+.|.++..+|+|++++.+-+...|.+.|+.+
T Consensus 356 v~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~--e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididn 432 (668)
T COG4946 356 VGKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGG--EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDN 432 (668)
T ss_pred cCCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCc--eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecC
Confidence 35666676666654 444677898998 8999998754 3455667778999999999999999988888899999998
Q ss_pred CceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecC----cEEEEeCCCceEEEecccccCCccCceeEEEECCCCCe
Q 016974 282 GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG----DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSA 357 (379)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg----~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~ 357 (379)
+.... ..+ .+-+-|+.+.|+|+++++|-+.-+| .|+++|...++...... ...|. .+-+|.||+++
T Consensus 433 gnv~~-idk----S~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT--~ta~D---fsPaFD~d~ry 502 (668)
T COG4946 433 GNVRL-IDK----SEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT--PTAYD---FSPAFDPDGRY 502 (668)
T ss_pred CCeeE-ecc----cccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC--Ccccc---cCcccCCCCcE
Confidence 87532 211 1234589999999999999887665 79999998888765431 12332 55689999998
Q ss_pred EEE
Q 016974 358 LCT 360 (379)
Q Consensus 358 l~s 360 (379)
|.-
T Consensus 503 LYf 505 (668)
T COG4946 503 LYF 505 (668)
T ss_pred EEE
Confidence 764
No 300
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.67 E-value=0.00012 Score=62.82 Aligned_cols=222 Identities=19% Similarity=0.208 Sum_probs=128.3
Q ss_pred CCCcEEEEECCCCceeeEeecCC--cceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEE
Q 016974 87 QDGRLIVWNALTSQKTHAIKLPC--AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCC 164 (379)
Q Consensus 87 ~D~~v~iwd~~~~~~~~~~~~~~--~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 164 (379)
.+|+|..||..+|+.+....... ....+ ...+++..+++++.++.+..||..+. +......+.+.....
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~l~~~d~~tG-----~~~W~~~~~~~~~~~--- 71 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVA-TAVPDGGRVYVASGDGNLYALDAKTG-----KVLWRFDLPGPISGA--- 71 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEE-TEEEETTEEEEEETTSEEEEEETTTS-----EEEEEEECSSCGGSG---
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccc-eEEEeCCEEEEEcCCCEEEEEECCCC-----CEEEEeeccccccce---
Confidence 37899999999999988876522 11111 12336677777789999999998643 221112221111111
Q ss_pred EEecCCCceEEEeeCCCeEEEeecCCCeeEEEe-cCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccce
Q 016974 165 QYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF-GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 243 (379)
Q Consensus 165 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~ 243 (379)
... . +..++.++.++.+..+|..+|...-.. ................+. +..++.+..++.|..+|.++. +.+
T Consensus 72 ~~~-~-~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~l~~~d~~tG-~~~ 145 (238)
T PF13360_consen 72 PVV-D-GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD---GDRLYVGTSSGKLVALDPKTG-KLL 145 (238)
T ss_dssp EEE-E-TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE---TTEEEEEETCSEEEEEETTTT-EEE
T ss_pred eee-c-ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEe---cCEEEEEeccCcEEEEecCCC-cEE
Confidence 111 2 235666778889999999998765442 211000111111222222 346677777899999998866 344
Q ss_pred EEEecccCC----------eeEEEEccCCCEEEEeeCCCe-EEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEE
Q 016974 244 RTFHGHEGD----------VNTVKFFPDGNRFGTGSDDGT-CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL 312 (379)
Q Consensus 244 ~~~~~h~~~----------v~~v~~sp~g~~l~s~s~D~~-i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l 312 (379)
......... +..-....++ .+..++.++. +.+ |+.+++.+ +... .. .+.. ...+++..|
T Consensus 146 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~--w~~~--~~---~~~~-~~~~~~~~l 215 (238)
T PF13360_consen 146 WKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKL--WSKP--IS---GIYS-LPSVDGGTL 215 (238)
T ss_dssp EEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEE--EEEC--SS----ECE-CEECCCTEE
T ss_pred EEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEE--EEec--CC---CccC-CceeeCCEE
Confidence 444333321 1122222244 6666666774 666 99998854 2221 11 1222 245788889
Q ss_pred EEEEecCcEEEEeCCCceEEE
Q 016974 313 FAGYSNGDCYVWDTLLAKVVL 333 (379)
Q Consensus 313 ~sg~~dg~i~iwd~~~~~~~~ 333 (379)
+.++.++.|+.||..+++...
T Consensus 216 ~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 216 YVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp EEEETTTEEEEEETTTTEEEE
T ss_pred EEEeCCCEEEEEECCCCCEEe
Confidence 888899999999999988754
No 301
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.65 E-value=9e-06 Score=76.89 Aligned_cols=240 Identities=18% Similarity=0.182 Sum_probs=157.0
Q ss_pred EEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCC------------CCEEEEeeCCCcEEEEE
Q 016974 70 VYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT------------GQSVACGGLDSVCSIFN 137 (379)
Q Consensus 70 v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~------------g~~l~~~~~d~~i~iw~ 137 (379)
-.+++|+|.| +||-||.. .|-+-|..+-+.+..+..|...|..+.|.|- .-.||++.-.|.|.+||
T Consensus 18 ~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d 95 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD 95 (1062)
T ss_pred ccccccCccc-eEEEecCc-eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence 5678999865 77777654 6889999999999999999999999998763 12577788889999999
Q ss_pred cCCCCCCCCCcceeeeecccccceEEEEEecCCC---ceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEE
Q 016974 138 LNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED---THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSI 214 (379)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~ 214 (379)
..... ....+..|.+.+..+.|.+..+ .+|+.-....++.+|+..+|...-.. ..+| ....++.+
T Consensus 96 ~~~~s-------~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~----~ys~-~iLs~f~~ 163 (1062)
T KOG1912|consen 96 FVLAS-------VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKY----DYSH-EILSCFRV 163 (1062)
T ss_pred ehhhh-------hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecc----ccCC-cceeeeee
Confidence 86432 1223456777888888876432 46778888899999999888654332 1222 33455778
Q ss_pred eCCCCcEEEEecCCCcEEEEEccCCc------cceEEEecccC----------------C---------eeEEEEccCCC
Q 016974 215 SGSNSRMFVSGSCDSTARLWDTRVAS------RAVRTFHGHEG----------------D---------VNTVKFFPDGN 263 (379)
Q Consensus 215 ~~~~~~~l~sg~~d~~i~vwd~~~~~------~~~~~~~~h~~----------------~---------v~~v~~sp~g~ 263 (379)
.|-+.+.|..-+..|.+.+-+.-... +..+.-..|.. . .-..+|+|.-+
T Consensus 164 DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~r 243 (1062)
T KOG1912|consen 164 DPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWR 243 (1062)
T ss_pred CCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhh
Confidence 88777777766777777776643211 11111112211 0 11356777544
Q ss_pred EEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeC
Q 016974 264 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326 (379)
Q Consensus 264 ~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~ 326 (379)
-++-...-+.+.++|++-...+....-+.+ ...+.++-=.|....|+++..||.+.+|-.
T Consensus 244 n~lfi~~prellv~dle~~~~l~vvpier~---~akfv~vlP~~~rd~LfclH~nG~ltirvr 303 (1062)
T KOG1912|consen 244 NILFITFPRELLVFDLEYECCLAVVPIERG---GAKFVDVLPDPRRDALFCLHSNGRLTIRVR 303 (1062)
T ss_pred ceEEEEeccceEEEcchhhceeEEEEeccC---CcceeEeccCCCcceEEEEecCCeEEEEEe
Confidence 444445567899999986666554432211 112333332344458999999999999953
No 302
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.65 E-value=0.00022 Score=61.64 Aligned_cols=220 Identities=20% Similarity=0.253 Sum_probs=134.8
Q ss_pred EEEeeC-CCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEEC-CCCCEEEEeeCCCcEEEEEcCCCCCCCCCcc
Q 016974 72 SLDWTS-ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFS-PTGQSVACGGLDSVCSIFNLNSPTDKDGNLP 149 (379)
Q Consensus 72 ~~~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~ 149 (379)
++.|.+ ++.++++--..+.|..|+..+++.. .+..+. ...+++. ++|.++++. .++ +.++|+.+. +..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~--~~G~~~~~~~g~l~v~~-~~~-~~~~d~~~g-----~~~ 73 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPG--PNGMAFDRPDGRLYVAD-SGG-IAVVDPDTG-----KVT 73 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE-EEESSS--EEEEEEECTTSEEEEEE-TTC-EEEEETTTT-----EEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-EEecCC--CceEEEEccCCEEEEEE-cCc-eEEEecCCC-----cEE
Confidence 567887 6667777778899999998876543 333333 6677777 676665554 444 455576542 222
Q ss_pred eeeeec--c-cccceEEEEEecCCCceEEEeeCC--------CeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCC
Q 016974 150 VSRMLS--G-HKGYVSCCQYVPDEDTHLITSSGD--------QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN 218 (379)
Q Consensus 150 ~~~~~~--~-h~~~v~~~~~~~~~~~~l~s~~~d--------~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 218 (379)
...... . .......+++.|++. +.++.... +.|..++.. +...... ........+++++..
T Consensus 74 ~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~------~~~~~pNGi~~s~dg 145 (246)
T PF08450_consen 74 VLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA------DGLGFPNGIAFSPDG 145 (246)
T ss_dssp EEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE------EEESSEEEEEEETTS
T ss_pred EEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEe------cCcccccceEECCcc
Confidence 222221 1 234567888988764 44544432 456666665 3332222 112345788999865
Q ss_pred CcEEEEecCCCcEEEEEccCCccc---eEEE---ecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeecc
Q 016974 219 SRMFVSGSCDSTARLWDTRVASRA---VRTF---HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 292 (379)
Q Consensus 219 ~~~l~sg~~d~~i~vwd~~~~~~~---~~~~---~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~ 292 (379)
..++++-+..+.|..+++...... .+.+ ..-.+....+++..+|++.++....+.|.++|.. |+.+..+..+
T Consensus 146 ~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p- 223 (246)
T PF08450_consen 146 KTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP- 223 (246)
T ss_dssp SEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S-
T ss_pred hheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC-
Confidence 556678888899999988643221 1222 2222247789999999988888888999999987 7777666443
Q ss_pred CCCCCCCeEEEEEc-cCCCEEEEE
Q 016974 293 GENEIPHVTSIAFS-ISGRLLFAG 315 (379)
Q Consensus 293 ~~~~~~~v~~~~fs-~~g~~l~sg 315 (379)
...+++++|. ++.+.|+.-
T Consensus 224 ----~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 224 ----VPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp ----SSSEEEEEEESTTSSEEEEE
T ss_pred ----CCCEEEEEEECCCCCEEEEE
Confidence 2258999994 666655543
No 303
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.63 E-value=2.1e-07 Score=79.64 Aligned_cols=148 Identities=16% Similarity=0.194 Sum_probs=104.1
Q ss_pred EEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCe-----eEEEecC
Q 016974 125 ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-----RTSVFGG 199 (379)
Q Consensus 125 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-----~~~~~~~ 199 (379)
++.|.+..+-+-|+.++.. . ...-+..|.++.|... ++.+..|...|.|...|++.+. +...
T Consensus 228 fs~G~sqqv~L~nvetg~~--------q-sf~sksDVfAlQf~~s-~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r--- 294 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ--------Q-SFQSKSDVFALQFAGS-DNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR--- 294 (425)
T ss_pred ecccccceeEEEEeecccc--------c-ccccchhHHHHHhccc-CCeeEecccCCcEEEEEeeecccCCCcceEE---
Confidence 5556666666666654321 1 1123456777888764 4678899999999999998752 2222
Q ss_pred ccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCcc--ceEEEecccCCeeE--EEEccCCCEEEEeeCCCeEE
Q 016974 200 EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR--AVRTFHGHEGDVNT--VKFFPDGNRFGTGSDDGTCR 275 (379)
Q Consensus 200 ~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~--~~~~~~~h~~~v~~--v~~sp~g~~l~s~s~D~~i~ 275 (379)
.-|...|+++......+++|++.+.+|.|++||.+..+. .+.+..||...-.- +..++....++++++|.-.|
T Consensus 295 ---lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytR 371 (425)
T KOG2695|consen 295 ---LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTR 371 (425)
T ss_pred ---EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEE
Confidence 247788888877654567888889999999999986532 36778888543222 33456677899999999999
Q ss_pred EEECCCCceeEEE
Q 016974 276 LFDIRTGHQLQVY 288 (379)
Q Consensus 276 iwd~~~~~~~~~~ 288 (379)
||.+..++.+...
T Consensus 372 iWsl~~ghLl~ti 384 (425)
T KOG2695|consen 372 IWSLDSGHLLCTI 384 (425)
T ss_pred EEecccCceeecc
Confidence 9999999877654
No 304
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=2.5e-05 Score=68.52 Aligned_cols=264 Identities=13% Similarity=0.144 Sum_probs=137.9
Q ss_pred EEEEECCCCceeeEeecCCcceEEEEECCCCC-EEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecC
Q 016974 91 LIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ-SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD 169 (379)
Q Consensus 91 v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 169 (379)
|++.+..+-+...-+..+...|..++|+|..+ ++..++.+.+|+|.|+.+.. +...+..| ..+.+|+|.-+
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~-------~vssy~a~-~~~wSC~wDld 246 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC-------VVSSYIAY-NQIWSCCWDLD 246 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccce-------eeeheecc-CCceeeeeccC
Confidence 44444444444343445566788999999887 88999999999999997632 33344455 67899999988
Q ss_pred CCceEEEeeCCCeEEEeecCCCeeEE-EecCccccCCccCeEEEEEeCCC-----CcEEEEecCCCcEEEEEccCCcc-c
Q 016974 170 EDTHLITSSGDQTCVLWDITTGLRTS-VFGGEFQSGHTADVLSVSISGSN-----SRMFVSGSCDSTARLWDTRVASR-A 242 (379)
Q Consensus 170 ~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~-----~~~l~sg~~d~~i~vwd~~~~~~-~ 242 (379)
+..++..|-..|.|.+||++...-.. .+.. .....+|..++..+++ +-+++..+. .+..|.+..... .
T Consensus 247 e~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a---~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~ 321 (463)
T KOG1645|consen 247 ERHVIYAGLQNGMVLVYDMRQPEGPLMELVA---NVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECL 321 (463)
T ss_pred CcceeEEeccCceEEEEEccCCCchHhhhhh---hhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCC
Confidence 88889999999999999998642111 0000 0112233333332222 112222222 244555432111 1
Q ss_pred eEEE-ecccCCeeEEEEccCCCE-EEEeeCCC---eEEE----EECCCCceeEEEeecc-CCCCCC--CeEEEEEccCCC
Q 016974 243 VRTF-HGHEGDVNTVKFFPDGNR-FGTGSDDG---TCRL----FDIRTGHQLQVYYQQH-GENEIP--HVTSIAFSISGR 310 (379)
Q Consensus 243 ~~~~-~~h~~~v~~v~~sp~g~~-l~s~s~D~---~i~i----wd~~~~~~~~~~~~~~-~~~~~~--~v~~~~fs~~g~ 310 (379)
..++ .+..+...+++.++-.+. |++.=.+- +++. -|-.+|..+......+ +..... .-..+.=.++.+
T Consensus 322 p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn 401 (463)
T KOG1645|consen 322 PCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNN 401 (463)
T ss_pred CcccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceecccccc
Confidence 1111 112344445555553333 33321110 0000 0111222221111101 100000 001111134555
Q ss_pred EEEE-EEecCcEEEEeCCCceEEEecccccCCccCceeEEEECC-CC-CeEEEeeCCCcEEEEecC
Q 016974 311 LLFA-GYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA-DG-SALCTGSWDTNLKIWAFG 373 (379)
Q Consensus 311 ~l~s-g~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~-d~-~~l~s~s~D~~i~vw~~~ 373 (379)
+|+. |++...+.+||..+.....++. -+.+|..++... ++ .+|+ .=.|..++||...
T Consensus 402 ~iv~~gd~tn~lil~D~~s~evvQ~l~-----~~epv~Dicp~~~n~~syLa-~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 402 YIVVVGDSTNELILQDPHSFEVVQTLA-----LSEPVLDICPNDTNGSSYLA-LLTDDRVHIYKNE 461 (463)
T ss_pred EEEEecCCcceeEEeccchhheeeecc-----cCcceeecceeecCCcchhh-heecceEEEEecC
Confidence 5544 5667789999999888877763 346888887543 33 4555 4457788888754
No 305
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.60 E-value=4.4e-07 Score=74.78 Aligned_cols=151 Identities=19% Similarity=0.206 Sum_probs=96.5
Q ss_pred eCCCCeEEEEcCCCcEEEEECCCCcee-eEeecCCcceEEEEECCCCCEEEEee-----CCCcEEEEEcCCCCCCCCCcc
Q 016974 76 TSERNRIVSASQDGRLIVWNALTSQKT-HAIKLPCAWVMTCAFSPTGQSVACGG-----LDSVCSIFNLNSPTDKDGNLP 149 (379)
Q Consensus 76 ~~~~~~l~s~s~D~~v~iwd~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~-----~d~~i~iw~~~~~~~~~~~~~ 149 (379)
+..++.++++..||.+-+.+...-... +.+....-..-+.++-..++.+.+++ .-+..+.|++++.. .+.
T Consensus 98 s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~----t~~ 173 (319)
T KOG4714|consen 98 TMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIK----TLI 173 (319)
T ss_pred cccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccc----ccc
Confidence 345678999999999999986542111 11110000011112223344444332 22345666665421 111
Q ss_pred eeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCC
Q 016974 150 VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS 229 (379)
Q Consensus 150 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~ 229 (379)
. ... --+.|.+++-+|.....+++|+.||.+-+||.+... ........|.+++..+-|+|.++..|++++.||
T Consensus 174 ~-~~~--~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~----~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedG 246 (319)
T KOG4714|consen 174 P-SKK--ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA----MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDG 246 (319)
T ss_pred c-ccc--ccccchhhhCCcccccEEEEecCCCeEEEEEccccc----chHHHHHHhhhhhhheeccCCCchheeEecCCC
Confidence 1 001 113488888888877788999999999999998752 222334789999999999999999999999999
Q ss_pred cEEEEEcc
Q 016974 230 TARLWDTR 237 (379)
Q Consensus 230 ~i~vwd~~ 237 (379)
.+..||..
T Consensus 247 slw~wdas 254 (319)
T KOG4714|consen 247 SLWHWDAS 254 (319)
T ss_pred cEEEEcCC
Confidence 99999975
No 306
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.57 E-value=0.00042 Score=62.09 Aligned_cols=279 Identities=15% Similarity=0.181 Sum_probs=125.7
Q ss_pred EeeCCCCeEEE-EcCCC--cEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcce
Q 016974 74 DWTSERNRIVS-ASQDG--RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPV 150 (379)
Q Consensus 74 ~~~~~~~~l~s-~s~D~--~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~ 150 (379)
+|.+||+.|+- +..|| .+.+.|+.+++..+--.+..........+|+.+.++-......+.-.|+.+.. .
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e-------~ 114 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLE-------E 114 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT---------E
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCc-------E
Confidence 57889976554 44455 56666888776554433332222234567888887666555666667776532 1
Q ss_pred eeeecccccceEEEEEecCCCceEEEeeC-----------------------CCeEEEeecCCCeeEEEecCccccCCcc
Q 016974 151 SRMLSGHKGYVSCCQYVPDEDTHLITSSG-----------------------DQTCVLWDITTGLRTSVFGGEFQSGHTA 207 (379)
Q Consensus 151 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-----------------------d~~i~~wd~~~~~~~~~~~~~~~~~h~~ 207 (379)
...+.-..+.+-...|..+.+...+.|.. .+.|.--|+.+|.....+. ...
T Consensus 115 ~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~------~~~ 188 (386)
T PF14583_consen 115 RVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE------DTD 188 (386)
T ss_dssp EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE------ESS
T ss_pred EEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe------cCc
Confidence 12222233334334454332333333221 2334445666665544442 234
Q ss_pred CeEEEEEeCCCCcEEEEecC---CCc-EEEEEccCCccceEEEeccc--CCeeEEEEccCCCEEEEe-----eCCCeEEE
Q 016974 208 DVLSVSISGSNSRMFVSGSC---DST-ARLWDTRVASRAVRTFHGHE--GDVNTVKFFPDGNRFGTG-----SDDGTCRL 276 (379)
Q Consensus 208 ~v~~~~~~~~~~~~l~sg~~---d~~-i~vwd~~~~~~~~~~~~~h~--~~v~~v~~sp~g~~l~s~-----s~D~~i~i 276 (379)
.+..+.++|.+..+++=|.. |.. -|||=++......+.+..|. ..+.-=-|.|||..|.-- +.+..|.-
T Consensus 189 wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~ 268 (386)
T PF14583_consen 189 WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAG 268 (386)
T ss_dssp -EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEE
T ss_pred cccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEe
Confidence 55678888888777766543 332 37786654333333222221 122333578888866432 23556777
Q ss_pred EECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecC----------------cEEEEeCCCceEEEeccc---
Q 016974 277 FDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG----------------DCYVWDTLLAKVVLNLGS--- 337 (379)
Q Consensus 277 wd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg----------------~i~iwd~~~~~~~~~~~~--- 337 (379)
+|+.+++....... ++..-+--++||++++.=+.|. -|++++...++.......
T Consensus 269 ~d~~t~~~~~~~~~-------p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~s 341 (386)
T PF14583_consen 269 YDPDTGERRRLMEM-------PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTS 341 (386)
T ss_dssp E-TTT--EEEEEEE--------SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE----
T ss_pred eCCCCCCceEEEeC-------CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCc
Confidence 88888765432211 2345566689998876533332 456677766554311100
Q ss_pred c--cCCccC-ceeEEEECCCCCeEE-EeeCCCcEEEEec
Q 016974 338 L--QNSHEG-RITCLGLSADGSALC-TGSWDTNLKIWAF 372 (379)
Q Consensus 338 ~--~~~h~~-~v~~~~~s~d~~~l~-s~s~D~~i~vw~~ 372 (379)
. ..++.. .=--..|+|||++|+ ++...|...||-+
T Consensus 342 w~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 342 WKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp ---BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred ceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 0 011110 013467999998776 5666888777754
No 307
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.56 E-value=1.2e-06 Score=83.89 Aligned_cols=181 Identities=22% Similarity=0.284 Sum_probs=124.7
Q ss_pred CceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEeccc
Q 016974 171 DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE 250 (379)
Q Consensus 171 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~ 250 (379)
+..++-|+....+..+|+++......... ....+.-+. .+++++.+|...|+|.+-|.+.. +.++++.+|.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v-----~a~~v~imR---~Nnr~lf~G~t~G~V~LrD~~s~-~~iht~~aHs 217 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNV-----SASGVTIMR---YNNRNLFCGDTRGTVFLRDPNSF-ETIHTFDAHS 217 (1118)
T ss_pred Ccceeecchhhheeeeecccceeeeeeec-----cCCceEEEE---ecCcEEEeecccceEEeecCCcC-ceeeeeeccc
Confidence 34578888888888999987655443321 112244333 46688999999999999998865 6788999999
Q ss_pred CCeeEEEEccCCCEEEEeeC---------CCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCC-CEEEEEEecCc
Q 016974 251 GDVNTVKFFPDGNRFGTGSD---------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG-RLLFAGYSNGD 320 (379)
Q Consensus 251 ~~v~~v~~sp~g~~l~s~s~---------D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g-~~l~sg~~dg~ 320 (379)
+.|..+. -.|+.|++++. |.-|+|||+|..+.+.-+.-..+ -.-+.|.|.- ..+++.+..|.
T Consensus 218 ~siSDfD--v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~------P~flrf~Psl~t~~~V~S~sGq 289 (1118)
T KOG1275|consen 218 GSISDFD--VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG------PQFLRFHPSLTTRLAVTSQSGQ 289 (1118)
T ss_pred cceeeee--ccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccC------chhhhhcccccceEEEEecccc
Confidence 9996554 57889998875 55689999998765433211111 1234566643 35677788888
Q ss_pred EEEEeC---CCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEe
Q 016974 321 CYVWDT---LLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA 371 (379)
Q Consensus 321 i~iwd~---~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~ 371 (379)
..+-|. .+...-..+ .......+..+++|+.|+.||.|..+|.|.+|.
T Consensus 290 ~q~vd~~~lsNP~~~~~~---v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 290 FQFVDTATLSNPPAGVKM---VNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eeeccccccCCCccceeE---EccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 888883 222111111 022234589999999999999999999999997
No 308
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.55 E-value=0.00012 Score=67.89 Aligned_cols=260 Identities=13% Similarity=0.057 Sum_probs=141.6
Q ss_pred CCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeee----
Q 016974 79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML---- 154 (379)
Q Consensus 79 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~---- 154 (379)
+..++.++.++.+..+|..+|+...+.........+... .+..++.+..++.+.-+|..+.. .......
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~-----~~W~~~~~~~~ 192 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGA-----VKWTVNLDVPS 192 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCC-----EeeeecCCCCc
Confidence 446777888999999999999988776654321111111 23456666777877777765432 1100000
Q ss_pred ---cccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccC-Cc----cCe-EEEEEeCCCCcEEEEe
Q 016974 155 ---SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSG-HT----ADV-LSVSISGSNSRMFVSG 225 (379)
Q Consensus 155 ---~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~-h~----~~v-~~~~~~~~~~~~l~sg 225 (379)
.+...++ . .+ ..++.++.++.+...|..+|...-........+ +. ..+ .+-.+. ++ .++.+
T Consensus 193 ~~~~~~~sP~----v--~~-~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~--~~-~vy~~ 262 (394)
T PRK11138 193 LTLRGESAPA----T--AF-GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVV--GG-VVYAL 262 (394)
T ss_pred ccccCCCCCE----E--EC-CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEE--CC-EEEEE
Confidence 0111111 1 12 246667788888888888875432211000000 00 000 010111 33 45556
Q ss_pred cCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEE
Q 016974 226 SCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF 305 (379)
Q Consensus 226 ~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~f 305 (379)
+.++.+...|..+... +-... ......+. .++..+..++.|+.+..+|..+++.+-........ ...+..+
T Consensus 263 ~~~g~l~ald~~tG~~-~W~~~--~~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~----~~~sp~v 333 (394)
T PRK11138 263 AYNGNLVALDLRSGQI-VWKRE--YGSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHR----LLTAPVL 333 (394)
T ss_pred EcCCeEEEEECCCCCE-EEeec--CCCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCC----cccCCEE
Confidence 6788898888876532 21111 11111122 24567778889999999999988764322110011 1111122
Q ss_pred ccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeE-EEECCCCCeEEEeeCCCcEEEEec
Q 016974 306 SISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITC-LGLSADGSALCTGSWDTNLKIWAF 372 (379)
Q Consensus 306 s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~-~~~s~d~~~l~s~s~D~~i~vw~~ 372 (379)
.+.+|+.++.+|.|++.|..+++.+..... ....+.. ..+ .+..|+.++.||.|+.++.
T Consensus 334 --~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~----~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 334 --YNGYLVVGDSEGYLHWINREDGRFVAQQKV----DSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred --ECCEEEEEeCCCEEEEEECCCCCEEEEEEc----CCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 256788899999999999999887655421 1111211 111 2457888999999988763
No 309
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.53 E-value=7.4e-05 Score=74.34 Aligned_cols=247 Identities=13% Similarity=0.129 Sum_probs=136.3
Q ss_pred cccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCC
Q 016974 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDG 146 (379)
Q Consensus 67 ~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~ 146 (379)
.+.|.++.|..+.+.++.+..+|.|.+-|.++..... .......|.+++|+||++.++....++++.+..-+- .+..
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f--~~i~ 144 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDF--EPIA 144 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccc--cchh
Confidence 3689999999999999999999999999877654332 233345689999999999999998888876654321 0000
Q ss_pred CcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEE--
Q 016974 147 NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS-- 224 (379)
Q Consensus 147 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s-- 224 (379)
..+....... .+....+.|-.... -+.|+. |....-+.... ....+.. .-.+.=.++.|-. ++.+|++
T Consensus 145 E~~L~~d~~~-~sk~v~VGwGrkeT--qfrgs~-gr~~~~~~~~~--ek~~~~~---~~~~~~~~IsWRg-Dg~~fAVs~ 214 (1265)
T KOG1920|consen 145 EKPLDADDER-KSKFVNVGWGRKET--QFRGSE-GRQAARQKIEK--EKALEQI---EQDDHKTSISWRG-DGEYFAVSF 214 (1265)
T ss_pred cccccccccc-ccccceecccccce--eeecch-hhhcccccccc--cccccch---hhccCCceEEEcc-CCcEEEEEE
Confidence 0010000000 01111233322111 111110 11110100000 0000000 0111124566764 7778877
Q ss_pred ---ecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEee---CCCeEEEEECCCCceeEEEeeccCCCCCC
Q 016974 225 ---GSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS---DDGTCRLFDIRTGHQLQVYYQQHGENEIP 298 (379)
Q Consensus 225 ---g~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s---~D~~i~iwd~~~~~~~~~~~~~~~~~~~~ 298 (379)
....+.|++||-. + ..-..-....+.=.+++|-|.|..+++-. +|+.|.+|.- +|-....+.-....+ ..
T Consensus 215 ~~~~~~~RkirV~drE-g-~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~d-e~ 290 (1265)
T KOG1920|consen 215 VESETGTRKIRVYDRE-G-ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLD-EK 290 (1265)
T ss_pred EeccCCceeEEEeccc-c-hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCccc-cc
Confidence 2233789999965 1 11111112233346799999999998763 5667888884 343222222212121 22
Q ss_pred CeEEEEEccCCCEEEE---EEecCcEEEEeCCCce
Q 016974 299 HVTSIAFSISGRLLFA---GYSNGDCYVWDTLLAK 330 (379)
Q Consensus 299 ~v~~~~fs~~g~~l~s---g~~dg~i~iwd~~~~~ 330 (379)
+|..++|+.++..||. ......|++|-+.+..
T Consensus 291 ~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 291 EVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred chheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 3889999999999988 4445569999876543
No 310
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=1.2e-05 Score=70.50 Aligned_cols=82 Identities=12% Similarity=0.220 Sum_probs=69.4
Q ss_pred eeccccccccEEEEEeeCCCC-eEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCC-CEEEEeeCCCcEEEEE
Q 016974 60 CRTLQGHAGKVYSLDWTSERN-RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG-QSVACGGLDSVCSIFN 137 (379)
Q Consensus 60 ~~~l~gH~~~v~~~~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~d~~i~iw~ 137 (379)
...+.+|...|.+++|+|..+ ++..++.+.+|+|.|+++......+..+ ..+.+|+|.-+. .+|.+|-..|.|.|||
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD 264 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYD 264 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEE
Confidence 335667888899999999776 6888999999999999998888777777 669999998765 5788888899999999
Q ss_pred cCCCC
Q 016974 138 LNSPT 142 (379)
Q Consensus 138 ~~~~~ 142 (379)
++.+.
T Consensus 265 ~R~~~ 269 (463)
T KOG1645|consen 265 MRQPE 269 (463)
T ss_pred ccCCC
Confidence 98754
No 311
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.52 E-value=3.7e-06 Score=80.79 Aligned_cols=183 Identities=15% Similarity=0.171 Sum_probs=128.6
Q ss_pred CeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeeccccc
Q 016974 80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG 159 (379)
Q Consensus 80 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~ 159 (379)
..++-|+-...+...|..+.+...........+.-+ -.+++++.+|...|+|.+-|.++. ...+++..|++
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~im--R~Nnr~lf~G~t~G~V~LrD~~s~-------~~iht~~aHs~ 218 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIM--RYNNRNLFCGDTRGTVFLRDPNSF-------ETIHTFDAHSG 218 (1118)
T ss_pred cceeecchhhheeeeecccceeeeeeeccCCceEEE--EecCcEEEeecccceEEeecCCcC-------ceeeeeecccc
Confidence 355666666677778887776655554444334433 346899999999999999998753 36788999999
Q ss_pred ceEEEEEecCCCceEEEeeC---------CCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCc
Q 016974 160 YVSCCQYVPDEDTHLITSSG---------DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST 230 (379)
Q Consensus 160 ~v~~~~~~~~~~~~l~s~~~---------d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~ 230 (379)
.|..... . ++.|++++. |.-|++||++....+..++.. - .-.-+.|+|.-...++.++..|.
T Consensus 219 siSDfDv--~-GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~-----~-~P~flrf~Psl~t~~~V~S~sGq 289 (1118)
T KOG1275|consen 219 SISDFDV--Q-GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP-----Y-GPQFLRFHPSLTTRLAVTSQSGQ 289 (1118)
T ss_pred ceeeeec--c-CCeEEEeecccccccccccchhhhhhhhhhhccCCcccc-----c-CchhhhhcccccceEEEEecccc
Confidence 9986654 3 356777764 677999999876554443221 1 11335567766778888999999
Q ss_pred EEEEE---ccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECC
Q 016974 231 ARLWD---TRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 280 (379)
Q Consensus 231 i~vwd---~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~ 280 (379)
..+-| +.++...+..+......+.++.+|++|+.+|.|-.+|.|.+|--+
T Consensus 290 ~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 290 FQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred eeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence 99988 333322233333444458999999999999999999999999743
No 312
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=3.3e-06 Score=74.87 Aligned_cols=208 Identities=15% Similarity=0.137 Sum_probs=132.6
Q ss_pred ccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecC-CCcEEEE
Q 016974 156 GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-DSTARLW 234 (379)
Q Consensus 156 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~-d~~i~vw 234 (379)
-|++.|+.|... ...++.+++.||.++.|.-..-.-+ .+-. ....|...+.+++.+ .++.+++|.+. |..++++
T Consensus 7 mhrd~i~hv~~t--ka~fiiqASlDGh~KFWkKs~isGv-EfVK-hFraHL~~I~sl~~S-~dg~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 7 MHRDVITHVFPT--KAKFIIQASLDGHKKFWKKSRISGV-EFVK-HFRAHLGVILSLAVS-YDGWLFRSVEDPDHSVKVF 81 (558)
T ss_pred cccceeeeEeee--hhheEEeeecchhhhhcCCCCccce-eehh-hhHHHHHHHHhhhcc-ccceeEeeccCcccceeEE
Confidence 377777766543 3468999999999999975421111 1111 124677777777776 47788999777 9999999
Q ss_pred EccCCccc-eEEEecccCCeeEEEEccC-CC-EE-EEeeCCCeEEEEECCCCc-eeEEEeeccCCCCCCCeEEEEEccCC
Q 016974 235 DTRVASRA-VRTFHGHEGDVNTVKFFPD-GN-RF-GTGSDDGTCRLFDIRTGH-QLQVYYQQHGENEIPHVTSIAFSISG 309 (379)
Q Consensus 235 d~~~~~~~-~~~~~~h~~~v~~v~~sp~-g~-~l-~s~s~D~~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~fs~~g 309 (379)
|+.+..-. ...+.--.+.+..+. +|. -. .| ++.-.++.+.++|-+... +...+. .-+..+|.++.+++.+
T Consensus 82 DvEn~DminmiKL~~lPg~a~wv~-skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fk----klH~sPV~~i~y~qa~ 156 (558)
T KOG0882|consen 82 DVENFDMINMIKLVDLPGFAEWVT-SKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFK----KLHFSPVKKIRYNQAG 156 (558)
T ss_pred EeeccchhhhcccccCCCceEEec-CCCCeeeeEEeecccCCCcEEECCcCCcCccceec----ccccCceEEEEeeccc
Confidence 98754221 111111122222211 221 11 23 333468899999977544 222222 2234679999999999
Q ss_pred CEEEEEEecCcEEEEeCCC------ceEEEecc------cccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 310 RLLFAGYSNGDCYVWDTLL------AKVVLNLG------SLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 310 ~~l~sg~~dg~i~iwd~~~------~~~~~~~~------~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
..+.+....|-|..|.... .+....+. .+ ........++.|+|+|..+.+-+.|.+|+++.+-+
T Consensus 157 Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f-~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~Kt 232 (558)
T KOG0882|consen 157 DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGF-PKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKT 232 (558)
T ss_pred cceeeccccceeEeecCCCcccCccccccccccccchhhcc-cccccCccceEEccccCcccccCcccEEEEEEecc
Confidence 9999999999999998652 11111110 01 11234568999999999999999999999998765
No 313
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.44 E-value=2.2e-05 Score=74.35 Aligned_cols=293 Identities=13% Similarity=0.139 Sum_probs=163.0
Q ss_pred eccccccccEEEEEeeCC---C-CeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECC-CCCEEEEeeCCCcEEE
Q 016974 61 RTLQGHAGKVYSLDWTSE---R-NRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSP-TGQSVACGGLDSVCSI 135 (379)
Q Consensus 61 ~~l~gH~~~v~~~~~~~~---~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~d~~i~i 135 (379)
..|..|.++|..++|-+. . ..|+.-....++-+|+..+|+.............+..+.| |.+.+..-+..|.+-+
T Consensus 103 ~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~ 182 (1062)
T KOG1912|consen 103 NWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLS 182 (1062)
T ss_pred hhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEE
Confidence 357788999999999763 3 4566667778999999999999888776666666677777 4455655566666665
Q ss_pred EEcCCCCCCCCCcceeeeeccccc-------------------------ceEEEEEecCCCceEEEeeCCCeEEEeecCC
Q 016974 136 FNLNSPTDKDGNLPVSRMLSGHKG-------------------------YVSCCQYVPDEDTHLITSSGDQTCVLWDITT 190 (379)
Q Consensus 136 w~~~~~~~~~~~~~~~~~~~~h~~-------------------------~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 190 (379)
-+.-...++........+-..|.. .....+|+|.-.+ ++-....+.+.++|++-
T Consensus 183 ~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn-~lfi~~prellv~dle~ 261 (1062)
T KOG1912|consen 183 CKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRN-ILFITFPRELLVFDLEY 261 (1062)
T ss_pred EeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhc-eEEEEeccceEEEcchh
Confidence 554433222221111111111111 0112345665433 44455778889999886
Q ss_pred CeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceE---------------EEec-ccCCee
Q 016974 191 GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR---------------TFHG-HEGDVN 254 (379)
Q Consensus 191 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~---------------~~~~-h~~~v~ 254 (379)
..++.....+ -.......+-..+ ....++....||.+.+|--+....... .+.. .+..+.
T Consensus 262 ~~~l~vvpie---r~~akfv~vlP~~-~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~ 337 (1062)
T KOG1912|consen 262 ECCLAVVPIE---RGGAKFVDVLPDP-RRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPV 337 (1062)
T ss_pred hceeEEEEec---cCCcceeEeccCC-CcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccc
Confidence 6655544221 1112233443333 445778899999999996543211100 0000 011222
Q ss_pred EEEEccC-CCEEEEeeCCCeEEEEECCCCceeEEEee-------cc-------------------CCCCCCCeEE-----
Q 016974 255 TVKFFPD-GNRFGTGSDDGTCRLFDIRTGHQLQVYYQ-------QH-------------------GENEIPHVTS----- 302 (379)
Q Consensus 255 ~v~~sp~-g~~l~s~s~D~~i~iwd~~~~~~~~~~~~-------~~-------------------~~~~~~~v~~----- 302 (379)
.....|. ...++.--.+|...+|.+++++....... +. ...+....++
T Consensus 338 ~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p 417 (1062)
T KOG1912|consen 338 IGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRP 417 (1062)
T ss_pred eeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeeccc
Confidence 2233343 33333334567778888875542111000 00 0001111111
Q ss_pred ------EEEccCC-------CEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeC
Q 016974 303 ------IAFSISG-------RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 363 (379)
Q Consensus 303 ------~~fs~~g-------~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~ 363 (379)
..-.|.| .++|.|...|+|.++|+.++.....+ ..|+..|.++.|-.... |+|.+.
T Consensus 418 ~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~f----svht~~VkgleW~g~ss-lvSfsy 486 (1062)
T KOG1912|consen 418 MPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASF----SVHTSLVKGLEWLGNSS-LVSFSY 486 (1062)
T ss_pred CcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhh----cccccceeeeeecccee-EEEeee
Confidence 1112222 36888999999999999887665555 67999999999976544 444443
No 314
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.43 E-value=0.00014 Score=72.38 Aligned_cols=242 Identities=15% Similarity=0.198 Sum_probs=131.0
Q ss_pred cceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeec-
Q 016974 110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI- 188 (379)
Q Consensus 110 ~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~- 188 (379)
..|.++.|..++..++.+..+|.|.+-|.... .+.+ .-.-.+.|.+++|+|+. ..++-.+.++++.+-+-
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~-----~~ei---vg~vd~GI~aaswS~De-e~l~liT~~~tll~mT~~ 139 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETL-----ELEI---VGNVDNGISAASWSPDE-ELLALITGRQTLLFMTKD 139 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccc-----ceee---eeeccCceEEEeecCCC-cEEEEEeCCcEEEEEecc
Confidence 57888999999998988999999888865431 1111 11224568899999986 56777777777765431
Q ss_pred ---CCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEE
Q 016974 189 ---TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF 265 (379)
Q Consensus 189 ---~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l 265 (379)
-....+ ..+ .........+-|.....+ +-|+.. ...-.+.....+......-| +.=++|.|--||+++
T Consensus 140 f~~i~E~~L---~~d--~~~~sk~v~VGwGrkeTq--frgs~g-r~~~~~~~~~ek~~~~~~~~-~~~~~IsWRgDg~~f 210 (1265)
T KOG1920|consen 140 FEPIAEKPL---DAD--DERKSKFVNVGWGRKETQ--FRGSEG-RQAARQKIEKEKALEQIEQD-DHKTSISWRGDGEYF 210 (1265)
T ss_pred ccchhcccc---ccc--cccccccceeccccccee--eecchh-hhcccccccccccccchhhc-cCCceEEEccCCcEE
Confidence 111111 000 000001111111110000 111110 00000000000000000111 122568999999999
Q ss_pred EEe-----eCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEE---ecCcEEEEeCCCceEEEeccc
Q 016974 266 GTG-----SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY---SNGDCYVWDTLLAKVVLNLGS 337 (379)
Q Consensus 266 ~s~-----s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~---~dg~i~iwd~~~~~~~~~~~~ 337 (379)
|+. ..-+.|++||.. |. +... ++.....-.+++|-|.|..+++-. +|+.|.+|.-...+ ...+..
T Consensus 211 AVs~~~~~~~~RkirV~drE-g~-Lns~----se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~-hg~f~l 283 (1265)
T KOG1920|consen 211 AVSFVESETGTRKIRVYDRE-GA-LNST----SEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLR-HGEFVL 283 (1265)
T ss_pred EEEEEeccCCceeEEEeccc-ch-hhcc----cCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcc-cccccc
Confidence 873 233899999965 32 2111 121222235889999999998853 56689999743221 111111
Q ss_pred ccCCccCceeEEEECCCCCeEEE---eeCCCcEEEEecCcee
Q 016974 338 LQNSHEGRITCLGLSADGSALCT---GSWDTNLKIWAFGGYR 376 (379)
Q Consensus 338 ~~~~h~~~v~~~~~s~d~~~l~s---~s~D~~i~vw~~~~~~ 376 (379)
....-..+|..++|+.++..||. ......|++|.++-|+
T Consensus 284 ~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 284 PFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred CCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 11222344899999999999998 4455569999988765
No 315
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.43 E-value=2e-07 Score=88.91 Aligned_cols=198 Identities=20% Similarity=0.323 Sum_probs=130.9
Q ss_pred eeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCC-
Q 016974 151 SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS- 229 (379)
Q Consensus 151 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~- 229 (379)
++.+..|+..-+|++|+.. .++|+.|+..|.|+++++.+|...... ..|...++-+..+.....+|.+++...
T Consensus 1094 w~~frd~~~~fTc~afs~~-~~hL~vG~~~Geik~~nv~sG~~e~s~-----ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGG-TNHLAVGSHAGEIKIFNVSSGSMEESV-----NCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred chhhhccccceeeEEeecC-CceEEeeeccceEEEEEccCccccccc-----cccccccccccccCCcceeeeeccccCc
Confidence 4456677777889999975 578999999999999999998654443 578899998888764444444444443
Q ss_pred cEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCC
Q 016974 230 TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG 309 (379)
Q Consensus 230 ~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g 309 (379)
-..+|+........+++.+ -.++.|+...+.-+.|..-....+||++++.++.++....-.+.- .-+++.|||+.
T Consensus 1168 lsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y-~~n~a~FsP~D 1242 (1516)
T KOG1832|consen 1168 LSALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSY-SNNLAHFSPCD 1242 (1516)
T ss_pred hHHHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhh-hccccccCCCc
Confidence 5779998754444444443 356888865444445555457889999999888775443221111 12678999999
Q ss_pred CEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 310 RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 310 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
.+|+ .|| .+||+.....+..+..+ +..+ .-.|+|.|.-++.-|. |||+..
T Consensus 1243 ~LIl---ndG--vLWDvR~~~aIh~FD~f----t~~~-~G~FHP~g~eVIINSE-----IwD~RT 1292 (1516)
T KOG1832|consen 1243 TLIL---NDG--VLWDVRIPEAIHRFDQF----TDYG-GGGFHPSGNEVIINSE-----IWDMRT 1292 (1516)
T ss_pred ceEe---eCc--eeeeeccHHHHhhhhhh----eecc-cccccCCCceEEeech-----hhhhHH
Confidence 9886 444 68998766544433222 1111 1247888887776554 676543
No 316
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.39 E-value=0.00074 Score=62.76 Aligned_cols=263 Identities=14% Similarity=0.132 Sum_probs=143.9
Q ss_pred CCCeEEEEcCCCcEEEEECCCCceeeEeecCCc--ceE-----EEEECC--CCCEEEEeeCCCcEEEEEcCCCCCCCCCc
Q 016974 78 ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCA--WVM-----TCAFSP--TGQSVACGGLDSVCSIFNLNSPTDKDGNL 148 (379)
Q Consensus 78 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~--~v~-----~~~~s~--~g~~l~~~~~d~~i~iw~~~~~~~~~~~~ 148 (379)
.++.++.++.++.+.-+|..+|+.+........ ... .+.-+| .+..++.++.++.+.-+|..+.. .
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~-----~ 142 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGE-----V 142 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCC-----C
Confidence 356888888999999999999998877654331 000 000011 35567778888888888876532 1
Q ss_pred ceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCcccc----CCccCeEEEEEeCCCCcEEEE
Q 016974 149 PVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS----GHTADVLSVSISGSNSRMFVS 224 (379)
Q Consensus 149 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~----~h~~~v~~~~~~~~~~~~l~s 224 (379)
.....+. +.+.+.-... + ..++.+..++.+.-+|..+|...-.+...... +...++ .. ++ .++.
T Consensus 143 ~W~~~~~---~~~~ssP~v~-~-~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~----v~--~~-~v~~ 210 (394)
T PRK11138 143 AWQTKVA---GEALSRPVVS-D-GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPA----TA--FG-GAIV 210 (394)
T ss_pred cccccCC---CceecCCEEE-C-CEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCE----EE--CC-EEEE
Confidence 1111111 1121111111 2 35667788999999999988755433211000 001111 11 22 3455
Q ss_pred ecCCCcEEEEEccCCccceEEEec-cc------CCeeEEEEcc--CCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCC
Q 016974 225 GSCDSTARLWDTRVASRAVRTFHG-HE------GDVNTVKFFP--DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN 295 (379)
Q Consensus 225 g~~d~~i~vwd~~~~~~~~~~~~~-h~------~~v~~v~~sp--~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~ 295 (379)
++.++.+...|..+... .-...- .. .....+.-+| .+..+..++.++.+..+|+.+|+.+-.. ..+.
T Consensus 211 ~~~~g~v~a~d~~~G~~-~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~--~~~~- 286 (394)
T PRK11138 211 GGDNGRVSAVLMEQGQL-IWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR--EYGS- 286 (394)
T ss_pred EcCCCEEEEEEccCChh-hheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee--cCCC-
Confidence 66778887777665422 111110 00 0011111222 3456777788999999999999765322 1111
Q ss_pred CCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccC-CccCceeEEEECCCCCeEEEeeCCCcEEEEecC
Q 016974 296 EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQN-SHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 373 (379)
Q Consensus 296 ~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~ 373 (379)
...+ ...+..|+.++.+|.++.+|..+++.......... ....++ + .+..|+.++.||.|.+.+..
T Consensus 287 ----~~~~--~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~----v--~~g~l~v~~~~G~l~~ld~~ 353 (394)
T PRK11138 287 ----VNDF--AVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPV----L--YNGYLVVGDSEGYLHWINRE 353 (394)
T ss_pred ----ccCc--EEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCE----E--ECCEEEEEeCCCEEEEEECC
Confidence 1111 23566788888999999999988876543321100 011121 1 24566778888888877653
No 317
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.39 E-value=0.0012 Score=57.48 Aligned_cols=108 Identities=19% Similarity=0.179 Sum_probs=62.9
Q ss_pred ccCCeeEEEEccCCCEEEEeeCCC-------eEEEEECCCCceeEEEeecc--CCCCCCCeEEEEEccCCCEEEEEEec-
Q 016974 249 HEGDVNTVKFFPDGNRFGTGSDDG-------TCRLFDIRTGHQLQVYYQQH--GENEIPHVTSIAFSISGRLLFAGYSN- 318 (379)
Q Consensus 249 h~~~v~~v~~sp~g~~l~s~s~D~-------~i~iwd~~~~~~~~~~~~~~--~~~~~~~v~~~~fs~~g~~l~sg~~d- 318 (379)
|.-.|.-+++.++|..++..=..+ .+-+++. +..+..+.... ...-...+-+|+|+++|.++++.+-.
T Consensus 161 ~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrG 238 (305)
T PF07433_consen 161 HQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRG 238 (305)
T ss_pred cccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCC
Confidence 566788899998886555443222 1222322 22222211100 00112468899999999999887754
Q ss_pred CcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCC
Q 016974 319 GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT 365 (379)
Q Consensus 319 g~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~ 365 (379)
+.+.+||..+++.+... .-..+..++-.+++ |++|.+.-.
T Consensus 239 g~~~~~d~~tg~~~~~~------~l~D~cGva~~~~~-f~~ssG~G~ 278 (305)
T PF07433_consen 239 GRVAVWDAATGRLLGSV------PLPDACGVAPTDDG-FLVSSGQGQ 278 (305)
T ss_pred CEEEEEECCCCCEeecc------ccCceeeeeecCCc-eEEeCCCcc
Confidence 47889999888876543 11234556655555 777665543
No 318
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.38 E-value=0.0003 Score=61.07 Aligned_cols=62 Identities=13% Similarity=0.204 Sum_probs=47.5
Q ss_pred eccccccccEEEEEeeCCCCeEEEE-----cCCCcEEEEECC-CCceeeEeecCCcceEEEEECCCCCEEEEee
Q 016974 61 RTLQGHAGKVYSLDWTSERNRIVSA-----SQDGRLIVWNAL-TSQKTHAIKLPCAWVMTCAFSPTGQSVACGG 128 (379)
Q Consensus 61 ~~l~gH~~~v~~~~~~~~~~~l~s~-----s~D~~v~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 128 (379)
+.|.|| -.|++||++|++. +..|.|-|||.. +-+.+..+..+.-.--.+.+.|||+.|+.+.
T Consensus 50 RHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVAN 117 (305)
T PF07433_consen 50 RHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVAN 117 (305)
T ss_pred CEEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEc
Confidence 567787 3699999999986 445899999998 5566667766655556677899998887764
No 319
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=4.6e-05 Score=72.54 Aligned_cols=146 Identities=17% Similarity=0.235 Sum_probs=96.0
Q ss_pred CCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCC-----CCEEEEeeCCCcEEEEEcCCCCCCCCCcceee
Q 016974 78 ERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPT-----GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSR 152 (379)
Q Consensus 78 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~-----g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~ 152 (379)
+|.+++|||.||+|.|-.+.+.+..+++..+ .++.+++++|+ .+.+++||.-| +.++.-+--.... ++
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df~-rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~---~v-- 154 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYDFK-RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKD---SV-- 154 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEecC-CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCcc---ce--
Confidence 5899999999999999999888877776654 46899999998 56889999888 6666533211110 11
Q ss_pred eecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCc-cCeEEEEEeCCCCcEEEEecCCCcE
Q 016974 153 MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHT-ADVLSVSISGSNSRMFVSGSCDSTA 231 (379)
Q Consensus 153 ~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~sg~~d~~i 231 (379)
.+..-.|+|.++.|.. ++++-+ .|--|++||..++.++..++........ .--..+.|.+ + ..++.| +.-+|
T Consensus 155 ~l~~~eG~I~~i~W~g---~lIAWa-nd~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~-~-~~LVIG-W~d~v 227 (846)
T KOG2066|consen 155 VLSEGEGPIHSIKWRG---NLIAWA-NDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQD-E-DRLVIG-WGDSV 227 (846)
T ss_pred eeecCccceEEEEecC---cEEEEe-cCCCcEEEeccccceeeccCCCCCCCCcccCCCceEecC-C-CeEEEe-cCCeE
Confidence 2444568999999963 345555 4555899999988777665432211111 1123455654 2 344444 33478
Q ss_pred EEEEcc
Q 016974 232 RLWDTR 237 (379)
Q Consensus 232 ~vwd~~ 237 (379)
++..++
T Consensus 228 ~i~~I~ 233 (846)
T KOG2066|consen 228 KICSIK 233 (846)
T ss_pred EEEEEe
Confidence 888877
No 320
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=8.4e-05 Score=70.87 Aligned_cols=179 Identities=16% Similarity=0.192 Sum_probs=115.0
Q ss_pred CCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCc
Q 016974 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 200 (379)
Q Consensus 121 g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 200 (379)
++.++-|.-+|.+++.+.+... .+...|+.. ...+.+++|||.||+|.+-.+-+......+
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~~~---------~~~~~~s~~-------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~--- 109 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQGNP---------KTNFDHSSS-------ILEGEYVASCSDDGKVVIGSLFTDDEITQY--- 109 (846)
T ss_pred cceeeeccccceEEEEecCCcc---------ccccccccc-------ccCCceEEEecCCCcEEEeeccCCccceeE---
Confidence 6788889999999998865321 122233222 234578999999999999887766544433
Q ss_pred cccCCccCeEEEEEeCC----CCcEEEEecCCCcEEEEEccCCcc-ceEEEecccCCeeEEEEccCCCEEEEeeCCCeEE
Q 016974 201 FQSGHTADVLSVSISGS----NSRMFVSGSCDSTARLWDTRVASR-AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCR 275 (379)
Q Consensus 201 ~~~~h~~~v~~~~~~~~----~~~~l~sg~~d~~i~vwd~~~~~~-~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~ 275 (379)
....++.+++++|. ..+.|++|+.-| +-++.-+-.+. ....+..-.++|.++.|. |+++|-++++| |+
T Consensus 110 ---df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~ 182 (846)
T KOG2066|consen 110 ---DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VK 182 (846)
T ss_pred ---ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cE
Confidence 22356788888874 356789999988 76664321111 111355567899999995 77888888776 79
Q ss_pred EEECCCCceeEEEeeccCCC-CCCCeEEEEEccCCCEEEEEEecCcEEEEeCC
Q 016974 276 LFDIRTGHQLQVYYQQHGEN-EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327 (379)
Q Consensus 276 iwd~~~~~~~~~~~~~~~~~-~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~ 327 (379)
+||+.+++.+.....++... .......+.|.++. .|+.|..| +|.|..+.
T Consensus 183 vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 183 VYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGD-SVKICSIK 233 (846)
T ss_pred EEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEecCC-eEEEEEEe
Confidence 99999887765543332110 01112356776654 56667766 57776554
No 321
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.31 E-value=2e-07 Score=85.93 Aligned_cols=207 Identities=17% Similarity=0.230 Sum_probs=127.4
Q ss_pred ceEEEEECC--CCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEee----CCCeEE
Q 016974 111 WVMTCAFSP--TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS----GDQTCV 184 (379)
Q Consensus 111 ~v~~~~~s~--~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~----~d~~i~ 184 (379)
.+.+++..- +...++.|..+|.|.+-.+..+-.. -.....+|....++++|++-+.++|+.|- .|-.+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~ 132 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLK 132 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccc-----cceecccccccccccccccccHHHHHhhhhhhcccCCcc
Confidence 355555443 3347888999999999887754321 11234567778899999987666666653 356799
Q ss_pred EeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEcc-CCC
Q 016974 185 LWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGN 263 (379)
Q Consensus 185 ~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp-~g~ 263 (379)
|||+.++.....-...+..+......++++. .+.+++++|...+.++++|++-.-.....+ .+..+..+..+| .++
T Consensus 133 Iwdi~s~ltvPke~~~fs~~~l~gqns~cwl-rd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~n 209 (783)
T KOG1008|consen 133 IWDINSLLTVPKESPLFSSSTLDGQNSVCWL-RDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPN 209 (783)
T ss_pred ceecccccCCCccccccccccccCccccccc-cCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCC
Confidence 9999876322111111112233445577777 578899999999999999998321111111 244567788888 788
Q ss_pred EEEEeeCCCeEEEEE-CCCCceeEEEeeccCCCCCCCeEEEEEccCCC-EEEEEE-ecCcEEEEeC
Q 016974 264 RFGTGSDDGTCRLFD-IRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGY-SNGDCYVWDT 326 (379)
Q Consensus 264 ~l~s~s~D~~i~iwd-~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~-~l~sg~-~dg~i~iwd~ 326 (379)
|+++-. |+.|-+|| .++-+................+..++|.|... .+++.. ..++|+++|.
T Consensus 210 Y~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi 274 (783)
T KOG1008|consen 210 YFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDI 274 (783)
T ss_pred ceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecc
Confidence 887765 89999999 33222110001111111123478999999654 344444 4568999985
No 322
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.30 E-value=0.00037 Score=63.96 Aligned_cols=279 Identities=13% Similarity=0.152 Sum_probs=135.1
Q ss_pred cEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceee-EeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCC---C
Q 016974 69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTH-AIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTD---K 144 (379)
Q Consensus 69 ~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~---~ 144 (379)
.|+.+.|.++..-|+.|-..|.|-||.....+.-. .-... -....|.+ + ...++.-.+-|+..... +
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~---~~~~~~~~----~--~~~~~~~~l~di~~r~~~~~~ 73 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPP---DLDYNFRR----F--SLNNSPGKLTDISDRAPPSLK 73 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE---------------------S--------GGGSS-SEEE-GGG--TT-S
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCc---ccCccccc----c--cccCCCcceEEehhhCCcccc
Confidence 48899999998899999999999998765433211 00000 00000000 0 01111223444443211 1
Q ss_pred CCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCcc---ccCCccCeEEEEEe----CC
Q 016974 145 DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF---QSGHTADVLSVSIS----GS 217 (379)
Q Consensus 145 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~---~~~h~~~v~~~~~~----~~ 217 (379)
.+-.| ...+....+.|++++.+.- .+++.|..+|.+.+.|++.+..+......- .......+.++.|. ..
T Consensus 74 ~gf~P-~~l~~~~~g~vtal~~S~i--GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~ 150 (395)
T PF08596_consen 74 EGFLP-LTLLDAKQGPVTALKNSDI--GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGG 150 (395)
T ss_dssp EEEEE-EEEE---S-SEEEEEE-BT--SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TT
T ss_pred cccCc-hhheeccCCcEeEEecCCC--cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCC
Confidence 22222 2233445789999998743 489999999999999998765544321110 11223445666554 12
Q ss_pred CC---cEEEEecCCCcEEEEEccCCcc------ceEEEecccCCeeEEE-EccC-C-------------------CEEEE
Q 016974 218 NS---RMFVSGSCDSTARLWDTRVASR------AVRTFHGHEGDVNTVK-FFPD-G-------------------NRFGT 267 (379)
Q Consensus 218 ~~---~~l~sg~~d~~i~vwd~~~~~~------~~~~~~~h~~~v~~v~-~sp~-g-------------------~~l~s 267 (379)
++ -.++.|...|.+.+|.+..... .......+.++|..+. |+.+ | ..++.
T Consensus 151 D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vV 230 (395)
T PF08596_consen 151 DGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVV 230 (395)
T ss_dssp SSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEE
T ss_pred CcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEE
Confidence 22 4677888889999998753111 1111123445555554 3221 1 12344
Q ss_pred eeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEE-----ccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCc
Q 016974 268 GSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF-----SISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH 342 (379)
Q Consensus 268 ~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~f-----s~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h 342 (379)
.+.+..+|++.+.+.+.....+.. ...+..++| ...+..|++-..+|.|++|.+-.-+.+..+.-.....
T Consensus 231 vvSe~~irv~~~~~~k~~~K~~~~-----~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d 305 (395)
T PF08596_consen 231 VVSESDIRVFKPPKSKGAHKSFDD-----PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLD 305 (395)
T ss_dssp EE-SSEEEEE-TT---EEEEE-SS------EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---
T ss_pred EEcccceEEEeCCCCcccceeecc-----ccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccc
Confidence 445678999999887765554321 112334444 2356678888899999999987777665553221222
Q ss_pred cCceeEEEECCCCCeEEEeeCC
Q 016974 343 EGRITCLGLSADGSALCTGSWD 364 (379)
Q Consensus 343 ~~~v~~~~~s~d~~~l~s~s~D 364 (379)
...+....++++|..++-.|..
T Consensus 306 ~~~~~~ssis~~Gdi~~~~gps 327 (395)
T PF08596_consen 306 SRRLSSSSISRNGDIFYWTGPS 327 (395)
T ss_dssp HHHHTT-EE-TTS-EEEE-SSS
T ss_pred cccccccEECCCCCEEEEeCcc
Confidence 3344556778888887765544
No 323
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.28 E-value=0.0019 Score=55.24 Aligned_cols=187 Identities=18% Similarity=0.182 Sum_probs=111.2
Q ss_pred ceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEE-Eeccc
Q 016974 172 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT-FHGHE 250 (379)
Q Consensus 172 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~-~~~h~ 250 (379)
..+++++.++.+..||..+|...-.+... ....... .. .++ .++.++.++.|..+|..+... +.. .....
T Consensus 37 ~~v~~~~~~~~l~~~d~~tG~~~W~~~~~---~~~~~~~--~~--~~~-~v~v~~~~~~l~~~d~~tG~~-~W~~~~~~~ 107 (238)
T PF13360_consen 37 GRVYVASGDGNLYALDAKTGKVLWRFDLP---GPISGAP--VV--DGG-RVYVGTSDGSLYALDAKTGKV-LWSIYLTSS 107 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSEEEEEEECS---SCGGSGE--EE--ETT-EEEEEETTSEEEEEETTTSCE-EEEEEE-SS
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEeecc---cccccee--ee--ccc-ccccccceeeeEecccCCcce-eeeeccccc
Confidence 46777789999999999998765443221 1111111 11 133 445566778999999876643 333 22221
Q ss_pred C---CeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCC------CeEEEEEccCCCEEEEEEecCcE
Q 016974 251 G---DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP------HVTSIAFSISGRLLFAGYSNGDC 321 (379)
Q Consensus 251 ~---~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~------~v~~~~fs~~g~~l~sg~~dg~i 321 (379)
. .........++..++.+..++.|..+|+++|+.+-.+...... ... .+..-.+..++ .++.+..+|.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~ 185 (238)
T PF13360_consen 108 PPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR-GSSPISSFSDINGSPVISDG-RVYVSSGDGRV 185 (238)
T ss_dssp CTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT--SS--EEEETTEEEEEECCTT-EEEEECCTSSE
T ss_pred cccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCC-CCcceeeecccccceEEECC-EEEEEcCCCeE
Confidence 1 1122233334788888888999999999999887665432211 111 12222233345 77778888865
Q ss_pred EEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecCcee
Q 016974 322 YVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYR 376 (379)
Q Consensus 322 ~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~~~ 376 (379)
..+|..+++..... . ...+..+ ..+++..|+.++.|+.|..||.....
T Consensus 186 ~~~d~~tg~~~w~~----~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 186 VAVDLATGEKLWSK----P--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp EEEETTTTEEEEEE----C--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTE
T ss_pred EEEECCCCCEEEEe----c--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 54499998855422 1 1122221 34678888888899999999987643
No 324
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.20 E-value=5.1e-07 Score=83.33 Aligned_cols=205 Identities=18% Similarity=0.252 Sum_probs=131.0
Q ss_pred ceEEEEEecCCC-ceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEec----CCCcEEEE
Q 016974 160 YVSCCQYVPDED-THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS----CDSTARLW 234 (379)
Q Consensus 160 ~v~~~~~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~----~d~~i~vw 234 (379)
.+.|+++.-+.+ ..++.|..+|.|.+-.++...-. ..++.+++....++++|++.+.+.||.|- .|..+.||
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS---s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS---SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccc---cceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 456666655444 56788999999998877654322 22334677788899999998888888773 35679999
Q ss_pred EccCCcc-c--eEEEe-cccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEcc-CC
Q 016974 235 DTRVASR-A--VRTFH-GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI-SG 309 (379)
Q Consensus 235 d~~~~~~-~--~~~~~-~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~-~g 309 (379)
|+...-. + .-.|. +......+++|..+.+.+.+|...+.+.++|++......... ....+..+..+| .+
T Consensus 135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv------nTk~vqG~tVdp~~~ 208 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV------NTKYVQGITVDPFSP 208 (783)
T ss_pred ecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh------hhhhcccceecCCCC
Confidence 9864310 1 11122 234456688999899999999999999999998432111111 112356778888 77
Q ss_pred CEEEEEEecCcEEEEeCC-Cce-EEEecccccCCccCceeEEEECCCC-CeEEEeeCC-CcEEEEecCc
Q 016974 310 RLLFAGYSNGDCYVWDTL-LAK-VVLNLGSLQNSHEGRITCLGLSADG-SALCTGSWD-TNLKIWAFGG 374 (379)
Q Consensus 310 ~~l~sg~~dg~i~iwd~~-~~~-~~~~~~~~~~~h~~~v~~~~~s~d~-~~l~s~s~D-~~i~vw~~~~ 374 (379)
.|+++-. ||.|.+||.. .-+ ....+....+.....+..++|.|-. ..|++.+.| ++|+++++..
T Consensus 209 nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 209 NYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred Cceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 8887665 9999999941 111 1111111111222358999999853 345555555 6899988654
No 325
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.14 E-value=6.8e-05 Score=69.36 Aligned_cols=74 Identities=23% Similarity=0.319 Sum_probs=60.6
Q ss_pred cccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCC
Q 016974 248 GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327 (379)
Q Consensus 248 ~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~ 327 (379)
.....|.+++++|+...++.|+.||+|.+||...+-.. ..+. .-..+.++|+|+|.++++|+..|.+.+||..
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka-----~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKA-----EFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeee-----cccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 46778999999999999999999999999998765322 2111 1235789999999999999999999999964
Q ss_pred C
Q 016974 328 L 328 (379)
Q Consensus 328 ~ 328 (379)
.
T Consensus 330 L 330 (545)
T PF11768_consen 330 L 330 (545)
T ss_pred c
Confidence 3
No 326
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.13 E-value=0.00024 Score=65.89 Aligned_cols=70 Identities=24% Similarity=0.272 Sum_probs=58.1
Q ss_pred CCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecC
Q 016974 298 PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 373 (379)
Q Consensus 298 ~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~ 373 (379)
..+.+++++|+...++.|+.||.|.+||...+-.... .+.-..+.++|+|+|.++++|+.-|-+.+||+.
T Consensus 260 s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~------ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 260 SQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA------KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred CcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee------eecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 4689999999999999999999999999765432221 123356889999999999999999999999964
No 327
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.11 E-value=0.0056 Score=54.05 Aligned_cols=247 Identities=17% Similarity=0.260 Sum_probs=132.0
Q ss_pred EEEeeCCCCeEEEEc----------CCCcEEEEECCCCceeeEeecCCc-ce------EEEEECCCCCEEEEeeC--CCc
Q 016974 72 SLDWTSERNRIVSAS----------QDGRLIVWNALTSQKTHAIKLPCA-WV------MTCAFSPTGQSVACGGL--DSV 132 (379)
Q Consensus 72 ~~~~~~~~~~l~s~s----------~D~~v~iwd~~~~~~~~~~~~~~~-~v------~~~~~s~~g~~l~~~~~--d~~ 132 (379)
.+..+|+++.+++++ ..-.|.+||..+-.....+..+.. .. ...+++.+|++++.... -..
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 356789999887653 344799999999888777766643 21 22456777776654332 233
Q ss_pred EEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCC-CeeEEEecCccccCCccCeE-
Q 016974 133 CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT-GLRTSVFGGEFQSGHTADVL- 210 (379)
Q Consensus 133 i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~h~~~v~- 210 (379)
|.|-|+.... ....+. -.+ |...-|.++.-+.+-+.||++.-..+.. |........-+ ....+.+.
T Consensus 120 VtVVDl~~~k-------vv~ei~-~PG---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F-~~~~dp~f~ 187 (342)
T PF06433_consen 120 VTVVDLAAKK-------VVGEID-TPG---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVF-DPDDDPLFE 187 (342)
T ss_dssp EEEEETTTTE-------EEEEEE-GTS---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEES-STTTS-B-S
T ss_pred EEEEECCCCc-------eeeeec-CCC---EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeecccc-CCCCccccc
Confidence 4555544321 111111 011 2223344445688889999998887763 33222111111 12222222
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEEccCCccc-eEEEecc----------cCCeeEEEEccCCCEEEEee---CCC----
Q 016974 211 SVSISGSNSRMFVSGSCDSTARLWDTRVASRA-VRTFHGH----------EGDVNTVKFFPDGNRFGTGS---DDG---- 272 (379)
Q Consensus 211 ~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~-~~~~~~h----------~~~v~~v~~sp~g~~l~s~s---~D~---- 272 (379)
.-.+...++.++. -+.+|.|+--|+...... ...+.-- .+.-.-+++++..+.|..-- .++
T Consensus 188 ~~~~~~~~~~~~F-~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKd 266 (342)
T PF06433_consen 188 HPAYSRDGGRLYF-VSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKD 266 (342)
T ss_dssp --EEETTTTEEEE-EBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS
T ss_pred ccceECCCCeEEE-EecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccC
Confidence 2223333333433 677888888777643211 1111100 01122367776544443321 111
Q ss_pred ---eEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCC-EEEEEE-ecCcEEEEeCCCceEEEeccc
Q 016974 273 ---TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGY-SNGDCYVWDTLLAKVVLNLGS 337 (379)
Q Consensus 273 ---~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~-~l~sg~-~dg~i~iwd~~~~~~~~~~~~ 337 (379)
.|.++|+.+++.+..+..++ ++.++..+.+.+ +|++.+ .++.|.+||..+++.+..+..
T Consensus 267 pgteVWv~D~~t~krv~Ri~l~~------~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 267 PGTEVWVYDLKTHKRVARIPLEH------PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp -EEEEEEEETTTTEEEEEEEEEE------EESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred CceEEEEEECCCCeEEEEEeCCC------ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 58889999998887765432 366899999888 554444 578999999999998877753
No 328
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.08 E-value=0.0053 Score=52.48 Aligned_cols=209 Identities=17% Similarity=0.187 Sum_probs=113.4
Q ss_pred eecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEE
Q 016974 153 MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 232 (379)
Q Consensus 153 ~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~ 232 (379)
.+.+-...++.+.|.|+.+.+++.....+.|...+.. |..+..+.. .-....-.+++.. ++.++++.-.++.+.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l----~g~~D~EgI~y~g-~~~~vl~~Er~~~L~ 89 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPL----DGFGDYEGITYLG-NGRYVLSEERDQRLY 89 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-----SS-SSEEEEEE-S-TTEEEEEETTTTEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeC----CCCCCceeEEEEC-CCEEEEEEcCCCcEE
Confidence 3445556689999999887778888888999888874 544444321 1234567777764 566777666688899
Q ss_pred EEEccCCccc-----eEEEe-----cccCCeeEEEEccCCCEEEEeeCCCeEEEEECCC---CceeEEEeecc---CCCC
Q 016974 233 LWDTRVASRA-----VRTFH-----GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT---GHQLQVYYQQH---GENE 296 (379)
Q Consensus 233 vwd~~~~~~~-----~~~~~-----~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~---~~~~~~~~~~~---~~~~ 296 (379)
++++...... ...+. .++..+..++|+|.++.|+.+-+.....|+.+.. ...+....... ....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (248)
T PF06977_consen 90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF 169 (248)
T ss_dssp EEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred EEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccce
Confidence 8887432111 11111 2445689999999888888887777777777653 22222111100 1112
Q ss_pred CCCeEEEEEccCC-CEEEEEEecCcEEEEeCCCceEEEecccccCC-c-----cCceeEEEECCCCCeEEEeeCCCcEEE
Q 016974 297 IPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNS-H-----EGRITCLGLSADGSALCTGSWDTNLKI 369 (379)
Q Consensus 297 ~~~v~~~~fs~~g-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~-h-----~~~v~~~~~s~d~~~l~s~s~D~~i~v 369 (379)
...+++++|+|.. ++++-......|..+| ..++....+. +..+ | -..-..|+|.++|+..++ |+-+..++
T Consensus 170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~-L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~ 246 (248)
T PF06977_consen 170 VRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLS-LDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYR 246 (248)
T ss_dssp SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE--STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEE
T ss_pred eccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEE-eCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEE
Confidence 3357899999964 4566666777899999 4555543331 1121 1 124588999999976664 45555554
Q ss_pred E
Q 016974 370 W 370 (379)
Q Consensus 370 w 370 (379)
|
T Consensus 247 f 247 (248)
T PF06977_consen 247 F 247 (248)
T ss_dssp E
T ss_pred e
Confidence 4
No 329
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=0.0028 Score=61.37 Aligned_cols=200 Identities=12% Similarity=0.137 Sum_probs=121.2
Q ss_pred cEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcc-eEEEEECCCCCEEEEeeCCCc-----EEEEEcCCCC
Q 016974 69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAW-VMTCAFSPTGQSVACGGLDSV-----CSIFNLNSPT 142 (379)
Q Consensus 69 ~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~g~~l~~~~~d~~-----i~iw~~~~~~ 142 (379)
.|.|+ ++.+..++-|+.||.|-+.+.. -+..+.++.+... |..+-...+..+|++.+.|+. ++||+++.-.
T Consensus 27 ~isc~--~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISCC--SSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeEE--cCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 45554 6788899999999998887732 2222445544444 333322333468888777654 8999998642
Q ss_pred CCCCCccee--eeeccc-----ccceEEEEEecCCCceEEEeeCCCeEEEeecC--C--CeeEEEecCccccCCccCeEE
Q 016974 143 DKDGNLPVS--RMLSGH-----KGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT--T--GLRTSVFGGEFQSGHTADVLS 211 (379)
Q Consensus 143 ~~~~~~~~~--~~~~~h-----~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~--~--~~~~~~~~~~~~~~h~~~v~~ 211 (379)
.... ..+. ..+.+| ..++.+++.+.+ ...+|.|-.+|.|..+.-. . +.+.. +...-..+|+.
T Consensus 104 ~n~s-P~c~~~~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~-----~~~~~~~pITg 176 (933)
T KOG2114|consen 104 KNNS-PQCLYEHRIFTIKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRDRGSRQD-----YSHRGKEPITG 176 (933)
T ss_pred CCCC-cceeeeeeeeccCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhcccccee-----eeccCCCCcee
Confidence 2111 1122 122232 335667777765 5679999999999988421 1 11111 11223467888
Q ss_pred EEEeCCCCc-EEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCC
Q 016974 212 VSISGSNSR-MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 281 (379)
Q Consensus 212 ~~~~~~~~~-~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~ 281 (379)
+.+...... +|++.. ..|.+|.+.........+..|....+|..|++....+++++. .-+.+||...
T Consensus 177 L~~~~d~~s~lFv~Tt--~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~ 244 (933)
T KOG2114|consen 177 LALRSDGKSVLFVATT--EQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDG 244 (933)
T ss_pred eEEecCCceeEEEEec--ceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCC
Confidence 888754433 233332 468899887433235557778889999999976554555543 4689998763
No 330
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.00017 Score=69.29 Aligned_cols=154 Identities=16% Similarity=0.255 Sum_probs=99.7
Q ss_pred CCCcEEEEecCCCcEEEEEccCCccceEEEecccCC-eeEEEEccCCCEEEEeeCCC-----eEEEEECCCCc------e
Q 016974 217 SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGD-VNTVKFFPDGNRFGTGSDDG-----TCRLFDIRTGH------Q 284 (379)
Q Consensus 217 ~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~-v~~v~~sp~g~~l~s~s~D~-----~i~iwd~~~~~------~ 284 (379)
+++..++.|+.+|.|-+.+-. -+.++.++++... |..+....+..+|++.+.|+ .++|||+..-+ .
T Consensus 33 s~~~~vvigt~~G~V~~Ln~s--~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c 110 (933)
T KOG2114|consen 33 SSTGSVVIGTADGRVVILNSS--FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQC 110 (933)
T ss_pred CCCceEEEeeccccEEEeccc--ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcce
Confidence 355578889999988776643 2344677777776 44444433446888888765 48999987532 1
Q ss_pred e--EEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCc--eEEEecccccCCccCceeEEEECCCCCeEEE
Q 016974 285 L--QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA--KVVLNLGSLQNSHEGRITCLGLSADGSALCT 360 (379)
Q Consensus 285 ~--~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~--~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s 360 (379)
+ .........+...++++++.+.+-+.+|+|..||.|.++.-.-. +-.+. .......++|+.+++..|++.++-
T Consensus 111 ~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~--~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 111 LYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQ--DYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred eeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccce--eeeccCCCCceeeEEecCCceeEE
Confidence 1 01111111223567899999999999999999999999953111 11110 011334679999999999987444
Q ss_pred eeCCCcEEEEecCc
Q 016974 361 GSWDTNLKIWAFGG 374 (379)
Q Consensus 361 ~s~D~~i~vw~~~~ 374 (379)
+..-..|.+|.+.+
T Consensus 189 v~Tt~~V~~y~l~g 202 (933)
T KOG2114|consen 189 VATTEQVMLYSLSG 202 (933)
T ss_pred EEecceeEEEEecC
Confidence 55566788887765
No 331
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.95 E-value=0.01 Score=54.22 Aligned_cols=242 Identities=19% Similarity=0.227 Sum_probs=123.0
Q ss_pred cccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCC------------------cceEEEEECCCCCEEEEee
Q 016974 67 AGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPC------------------AWVMTCAFSPTGQSVACGG 128 (379)
Q Consensus 67 ~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~------------------~~v~~~~~s~~g~~l~~~~ 128 (379)
...+....|+|+|+.|+-.. ++.|.+++..+++.. .+.... ..-.++-|||||++|+...
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~-~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET-QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE-ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeE-EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence 45678899999999988765 678999998776332 222111 1124578999999998875
Q ss_pred CC-CcEEEEEcC---CCCC-----------CCCC-ccee---------------eee---cccccceEEEEEecCCCce-
Q 016974 129 LD-SVCSIFNLN---SPTD-----------KDGN-LPVS---------------RML---SGHKGYVSCCQYVPDEDTH- 173 (379)
Q Consensus 129 ~d-~~i~iw~~~---~~~~-----------~~~~-~~~~---------------~~~---~~h~~~v~~~~~~~~~~~~- 173 (379)
.| ..++.+.+- .+.. ..|. .+.. ... ..-...+..+.|.+++..+
T Consensus 120 ~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~ 199 (353)
T PF00930_consen 120 FDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLW 199 (353)
T ss_dssp EE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred ECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEE
Confidence 54 333333322 1100 0000 0000 000 1123356778888876423
Q ss_pred EEEeeCCC---eEEEeecCCCeeEEEecCccccCCccCeEEEEEe-CCCCcEEEEecCCCcEEEEEccCCccceEEEecc
Q 016974 174 LITSSGDQ---TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS-GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH 249 (379)
Q Consensus 174 l~s~~~d~---~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h 249 (379)
+.....+. .+.+.|..++......... ..+--.......+. +.+..++.....||.-+|+-+.......+.+...
T Consensus 200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~-~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G 278 (353)
T PF00930_consen 200 VQWLNRDQNRLDLVLCDASTGETRVVLEET-SDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSG 278 (353)
T ss_dssp EEEEETTSTEEEEEEEEECTTTCEEEEEEE-SSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-S
T ss_pred EEEcccCCCEEEEEEEECCCCceeEEEEec-CCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccC
Confidence 23334433 3555677665433322111 11111111233333 4455566666688877777555444444455544
Q ss_pred cCCeeE-EEEccCCCEE-EEeeCC----CeEEEEECC-CCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEe
Q 016974 250 EGDVNT-VKFFPDGNRF-GTGSDD----GTCRLFDIR-TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 317 (379)
Q Consensus 250 ~~~v~~-v~~sp~g~~l-~s~s~D----~~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~ 317 (379)
...|.. +.++++++.| .++..+ ..+..-++. .+. +..+....+. -..+.|||+|++++-..+
T Consensus 279 ~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~-~~~LT~~~~~-----~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 279 DWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE-PKCLTCEDGD-----HYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp SS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE-EEESSTTSST-----TEEEEE-TTSSEEEEEEE
T ss_pred ceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC-eEeccCCCCC-----ceEEEECCCCCEEEEEEc
Confidence 556744 6778877655 355442 345555666 333 3333221111 168999999999876543
No 332
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.93 E-value=2.3e-05 Score=45.19 Aligned_cols=37 Identities=35% Similarity=0.711 Sum_probs=33.3
Q ss_pred EeeccccccccEEEEEeeCCCCeEEEEcCCCcEEEEE
Q 016974 59 CCRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWN 95 (379)
Q Consensus 59 ~~~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd 95 (379)
+...+.+|...|.++.|.++++.+++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4456778999999999999999999999999999996
No 333
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.84 E-value=0.00043 Score=68.09 Aligned_cols=140 Identities=16% Similarity=0.219 Sum_probs=88.2
Q ss_pred EeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeC----CCCcEEEEecCCCcEEEEEccCCccceEEEec---
Q 016974 176 TSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG----SNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--- 248 (379)
Q Consensus 176 s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~--- 248 (379)
.....+.+.-.|++.|..+.... ......|..++... ....--+.|-.++.+..||.|.....+..-+.
T Consensus 499 ~~~~~~~ly~mDLe~GKVV~eW~----~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y 574 (794)
T PF08553_consen 499 DPNNPNKLYKMDLERGKVVEEWK----VHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQY 574 (794)
T ss_pred cCCCCCceEEEecCCCcEEEEee----cCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccc
Confidence 34456778888888887665542 12222355554321 01122345777889999999865422211112
Q ss_pred -ccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeC
Q 016974 249 -HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326 (379)
Q Consensus 249 -h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~ 326 (379)
......|++-+.+| +||.||.+|.||+|| +.|+..++.... -..+|..+..+.||+||++- .+..|.+.++
T Consensus 575 ~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd-~~g~~AKT~lp~----lG~pI~~iDvt~DGkwilaT-c~tyLlLi~t 646 (794)
T PF08553_consen 575 SSKNNFSCFATTEDG-YIAVGSNKGDIRLYD-RLGKRAKTALPG----LGDPIIGIDVTADGKWILAT-CKTYLLLIDT 646 (794)
T ss_pred ccCCCceEEEecCCc-eEEEEeCCCcEEeec-ccchhhhhcCCC----CCCCeeEEEecCCCcEEEEe-ecceEEEEEE
Confidence 23456788877777 799999999999999 444443333222 23579999999999998854 4556777764
No 334
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.75 E-value=0.0014 Score=64.69 Aligned_cols=145 Identities=19% Similarity=0.192 Sum_probs=93.1
Q ss_pred CCcEEEEe-cCCCcEEEEEccCCccceEEEecccCC-eeEEEEccC-------CCEEEEeeCCCeEEEEECCCCc-eeEE
Q 016974 218 NSRMFVSG-SCDSTARLWDTRVASRAVRTFHGHEGD-VNTVKFFPD-------GNRFGTGSDDGTCRLFDIRTGH-QLQV 287 (379)
Q Consensus 218 ~~~~l~sg-~~d~~i~vwd~~~~~~~~~~~~~h~~~-v~~v~~sp~-------g~~l~s~s~D~~i~iwd~~~~~-~~~~ 287 (379)
+.++++.. .....|+--|+..+ +.+..+..|... |.. |.|+ ...-..|-.+..+..||+|-.. .+.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~G-KVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v- 567 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERG-KVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLV- 567 (794)
T ss_pred ccceEeecCCCCCceEEEecCCC-cEEEEeecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCCCcee-
Confidence 44454443 44567888888765 677777776543 444 4343 2334567778899999998643 211
Q ss_pred EeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcE
Q 016974 288 YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNL 367 (379)
Q Consensus 288 ~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i 367 (379)
..+.+.-......+|++-+.+| +||+|+.+|.|++||.. ++..+ +...+-..||..|+.+.||++|+.. .+..+
T Consensus 568 ~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~-g~~AK---T~lp~lG~pI~~iDvt~DGkwilaT-c~tyL 641 (794)
T PF08553_consen 568 DSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRL-GKRAK---TALPGLGDPIIGIDVTADGKWILAT-CKTYL 641 (794)
T ss_pred eccccccccCCCceEEEecCCc-eEEEEeCCCcEEeeccc-chhhh---hcCCCCCCCeeEEEecCCCcEEEEe-ecceE
Confidence 1111111122346788877777 78999999999999943 33222 2335667899999999999998844 45666
Q ss_pred EEEec
Q 016974 368 KIWAF 372 (379)
Q Consensus 368 ~vw~~ 372 (379)
-|.+.
T Consensus 642 lLi~t 646 (794)
T PF08553_consen 642 LLIDT 646 (794)
T ss_pred EEEEE
Confidence 66663
No 335
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.75 E-value=0.00021 Score=67.39 Aligned_cols=120 Identities=18% Similarity=0.198 Sum_probs=86.2
Q ss_pred CCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCce
Q 016974 251 GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK 330 (379)
Q Consensus 251 ~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~ 330 (379)
..|.--+++..+.+++.|+.-|.+.+|+-..+.... +.... ....+..++.|++..++|+|+..|.|.++.+....
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~-~~~~~---~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRK-LKNEG---ATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhc-ccccC---ccceEEEEEecchhHhhhhhcCCceEEeehhhccC
Confidence 344445566788999999999999999976654332 21111 12335667789999999999999999999765421
Q ss_pred E--EEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 331 V--VLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 331 ~--~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
. ...+......|...|+|++|++|+..|.+|..-|+|-+-.++.
T Consensus 110 p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 110 PRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 1 1112223345889999999999999999999999998776654
No 336
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.73 E-value=0.00011 Score=42.16 Aligned_cols=37 Identities=46% Similarity=0.868 Sum_probs=32.7
Q ss_pred ceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEE
Q 016974 242 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD 278 (379)
Q Consensus 242 ~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd 278 (379)
....+.+|...|.++.|+|++..+++++.|+.+++||
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3455677888999999999999999999999999996
No 337
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.72 E-value=0.0027 Score=60.49 Aligned_cols=181 Identities=14% Similarity=0.088 Sum_probs=105.4
Q ss_pred eeCCCCeEEE-EcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCc--EEEEEcCCCCCCCCCccee
Q 016974 75 WTSERNRIVS-ASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSV--CSIFNLNSPTDKDGNLPVS 151 (379)
Q Consensus 75 ~~~~~~~l~s-~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~--i~iw~~~~~~~~~~~~~~~ 151 (379)
++|||+.+.. .-..+.+.+.|..+.+...++.... ....++++|+|+++.+.+.+.. ..+-.++.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a----------- 267 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMA----------- 267 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeecc-----------
Confidence 4456655432 2334567777877766666665543 3467789999999988875321 11111111
Q ss_pred eeecccccceEEE------EEecCCCceEEEeeCCCeEEEeecCC----C-eeEEEecCccccCCccCeEEEEEeCCCCc
Q 016974 152 RMLSGHKGYVSCC------QYVPDEDTHLITSSGDQTCVLWDITT----G-LRTSVFGGEFQSGHTADVLSVSISGSNSR 220 (379)
Q Consensus 152 ~~~~~h~~~v~~~------~~~~~~~~~l~s~~~d~~i~~wd~~~----~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 220 (379)
+-.+.+..+ ++.+++...++ .+++|.+.|..+ + .....+. -......+.++|....
T Consensus 268 ----~e~d~~vvfni~~iea~vkdGK~~~V---~gn~V~VID~~t~~~~~~~v~~yIP------VGKsPHGV~vSPDGky 334 (635)
T PRK02888 268 ----AERDWVVVFNIARIEEAVKAGKFKTI---GGSKVPVVDGRKAANAGSALTRYVP------VPKNPHGVNTSPDGKY 334 (635)
T ss_pred ----ccCceEEEEchHHHHHhhhCCCEEEE---CCCEEEEEECCccccCCcceEEEEE------CCCCccceEECCCCCE
Confidence 001111111 22334433233 367899999887 3 2233322 1223446777875555
Q ss_pred EEEEecCCCcEEEEEccCCcc-----------ceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCC
Q 016974 221 MFVSGSCDSTARLWDTRVASR-----------AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 281 (379)
Q Consensus 221 ~l~sg~~d~~i~vwd~~~~~~-----------~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~ 281 (379)
+++++..+.++.|.|+..... .+....--.+ -...+|.++|+.+.|-.-|..|-.||+.+
T Consensus 335 lyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 335 FIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEEEehHH
Confidence 566677799999999876432 1222221122 34578999999888889999999999875
No 338
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.70 E-value=0.00034 Score=66.01 Aligned_cols=112 Identities=15% Similarity=0.196 Sum_probs=81.2
Q ss_pred CCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCcee-EEEeeccCCC
Q 016974 217 SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL-QVYYQQHGEN 295 (379)
Q Consensus 217 ~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~-~~~~~~~~~~ 295 (379)
...++++.|+.-|.+.+|.-....-......+-.+.+.....|++..++|.|+..|.|.++-+..+.+. ..+.......
T Consensus 43 st~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~ 122 (726)
T KOG3621|consen 43 ATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKS 122 (726)
T ss_pred cCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecccccc
Confidence 466799999999999999854332222223334456677788999999999999999999988764332 2222222222
Q ss_pred CCCCeEEEEEccCCCEEEEEEecCcEEEEeCCC
Q 016974 296 EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (379)
Q Consensus 296 ~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~ 328 (379)
+...|++++|++++..+++|+..|+|.+-.+..
T Consensus 123 ~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 123 HKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 455799999999999999999999999876654
No 339
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.69 E-value=0.0043 Score=57.68 Aligned_cols=198 Identities=18% Similarity=0.254 Sum_probs=111.2
Q ss_pred CceeeEeecCCcceEEEEECCCCCEEEEee---CC-CcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceE
Q 016974 99 SQKTHAIKLPCAWVMTCAFSPTGQSVACGG---LD-SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHL 174 (379)
Q Consensus 99 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~---~d-~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 174 (379)
+.....+......+..-+|+|+++.++... .. ..+.+++++.... +..-.+.++.. .-+|+|++..++
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~-----~~i~~~~g~~~---~P~fspDG~~l~ 253 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKR-----PVILNFNGNNG---APAFSPDGSKLA 253 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcc-----ceeeccCCccC---CccCCCCCCEEE
Confidence 333344444445566678999998766543 22 3577888775432 22233444443 347999998888
Q ss_pred EEeeCCCeEEEe--ecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCC
Q 016974 175 ITSSGDQTCVLW--DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGD 252 (379)
Q Consensus 175 ~s~~~d~~i~~w--d~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~ 252 (379)
++...|+...+| |+.++........ .+. -..=.++|.+..++++.+..|.-.||-..........+......
T Consensus 254 f~~~rdg~~~iy~~dl~~~~~~~Lt~~---~gi---~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~ 327 (425)
T COG0823 254 FSSSRDGSPDIYLMDLDGKNLPRLTNG---FGI---NTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGG 327 (425)
T ss_pred EEECCCCCccEEEEcCCCCcceecccC---Ccc---ccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCC
Confidence 888888876655 6666543321110 111 11345677666677777777876777554333333333323222
Q ss_pred eeEEEEccCCCEEEEeeCC-Ce--EEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEE
Q 016974 253 VNTVKFFPDGNRFGTGSDD-GT--CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY 316 (379)
Q Consensus 253 v~~v~~sp~g~~l~s~s~D-~~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~ 316 (379)
-..-.|+|||++|+..+.. |. |.+.|+.++.....+... .....-.+.|+|.++...+
T Consensus 328 ~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~------~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 328 NSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTST------YLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred CcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcccc------ccCCCCCcCCCCceEEEec
Confidence 2367889999999887743 33 666666655432222111 1122446677877665543
No 340
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.69 E-value=0.046 Score=50.92 Aligned_cols=183 Identities=10% Similarity=0.119 Sum_probs=89.7
Q ss_pred cEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcc-eeeeecccccceEEEEEec
Q 016974 90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLP-VSRMLSGHKGYVSCCQYVP 168 (379)
Q Consensus 90 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~ 168 (379)
.|+||+.. |+.+.++....+.+..+.|+.+ ..|++...||.++++|+.... . -..+ ......-....+....+..
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~-~-fsl~~~i~~~~v~e~~i~~~~~~~ 137 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEF-Q-FSLGEEIEEEKVLECRIFAIWFYK 137 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCce-e-echhhhccccCcccccccccccCC
Confidence 48899854 7778777776688999999884 566677899999999985322 0 0000 0000000111121112211
Q ss_pred CCCceEEEeeCCCeEEEe-ecCCCeeEE---EecCccccCCc-cCeEE-EEEeCCCCcEEEEecCCCcEEEEEccCCccc
Q 016974 169 DEDTHLITSSGDQTCVLW-DITTGLRTS---VFGGEFQSGHT-ADVLS-VSISGSNSRMFVSGSCDSTARLWDTRVASRA 242 (379)
Q Consensus 169 ~~~~~l~s~~~d~~i~~w-d~~~~~~~~---~~~~~~~~~h~-~~v~~-~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~ 242 (379)
++-.+++ .++.+.+- +........ .........+. ..... ..+.. +....+....++.+.+-+-...
T Consensus 138 -~GivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~-~~~~~i~~~~g~~i~~i~~~~~--- 210 (410)
T PF04841_consen 138 -NGIVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSS-DRVVEILLANGETIYIIDENSF--- 210 (410)
T ss_pred -CCEEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeec-CcceEEEEecCCEEEEEEcccc---
Confidence 2222222 23333222 222111111 01100000010 01111 11221 2233444444455553332211
Q ss_pred eEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCcee
Q 016974 243 VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL 285 (379)
Q Consensus 243 ~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~ 285 (379)
..+. ..+++..+++||+|+++|.-..+|.+.+.+..-.+.+
T Consensus 211 -~~i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~ 251 (410)
T PF04841_consen 211 -KQID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKL 251 (410)
T ss_pred -cccc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECccccee
Confidence 1121 2357999999999999999999999988875433333
No 341
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.68 E-value=0.012 Score=56.34 Aligned_cols=92 Identities=16% Similarity=0.117 Sum_probs=61.9
Q ss_pred CeEEEEECCC----C-ceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEE-ecCcEEEEeCCCceE------------EE
Q 016974 272 GTCRLFDIRT----G-HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKV------------VL 333 (379)
Q Consensus 272 ~~i~iwd~~~----~-~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~-~dg~i~iwd~~~~~~------------~~ 333 (379)
++|.+.|.++ + ..+..+.. + .....+.+||||+++++++ .+.++.|.|+...+. ..
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPV--G----KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vva 369 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPV--P----KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVA 369 (635)
T ss_pred CEEEEEECCccccCCcceEEEEEC--C----CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEE
Confidence 5577777776 2 22222211 1 1246789999999887765 578999999866442 22
Q ss_pred ecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 334 NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 334 ~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
+. ....+| ...+|+++|+...|--.|..|-.|++..
T Consensus 370 ev----evGlGP-LHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 370 EP----ELGLGP-LHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ee----ccCCCc-ceEEECCCCCEEEeEeecceeEEEehHH
Confidence 22 112333 3468999999888999999999999765
No 342
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.67 E-value=0.0012 Score=63.72 Aligned_cols=71 Identities=14% Similarity=0.105 Sum_probs=61.4
Q ss_pred EEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCC
Q 016974 70 VYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNS 140 (379)
Q Consensus 70 v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~ 140 (379)
+++++|+|..-.|++|=.-|.+-+|...+.+.-.....|...+..+.|||+|..++++..-|.+.+|..+.
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 46799999887888888889999999887665555566788899999999999999999999999999874
No 343
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.66 E-value=0.035 Score=51.91 Aligned_cols=218 Identities=11% Similarity=0.111 Sum_probs=105.0
Q ss_pred cceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEe-ec
Q 016974 110 AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLW-DI 188 (379)
Q Consensus 110 ~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~w-d~ 188 (379)
.....+.++|+|++++. ..|+...|+.... ..... .+.-....|.+.+ .++.-...++|.++ ++
T Consensus 33 ~~p~~ls~npngr~v~V-~g~geY~iyt~~~---------~r~k~---~G~g~~~vw~~~n--~yAv~~~~~~I~I~kn~ 97 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLV-CGDGEYEIYTALA---------WRNKA---FGSGLSFVWSSRN--RYAVLESSSTIKIYKNF 97 (443)
T ss_dssp S--SEEEE-TTSSEEEE-EETTEEEEEETTT---------TEEEE---EEE-SEEEE-TSS--EEEEE-TTS-EEEEETT
T ss_pred cCCeeEEECCCCCEEEE-EcCCEEEEEEccC---------Ccccc---cCceeEEEEecCc--cEEEEECCCeEEEEEcC
Confidence 44678899999999988 5566666776321 11111 2233456788743 46666668889986 33
Q ss_pred CCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEe
Q 016974 189 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG 268 (379)
Q Consensus 189 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~ 268 (379)
.... ...+ .... .+..+.. +.+|+..+.+ .|.+||+... +.++.+.. .+|..|.|+++|.+++-.
T Consensus 98 ~~~~-~k~i----~~~~--~~~~If~----G~LL~~~~~~-~i~~yDw~~~-~~i~~i~v--~~vk~V~Ws~~g~~val~ 162 (443)
T PF04053_consen 98 KNEV-VKSI----KLPF--SVEKIFG----GNLLGVKSSD-FICFYDWETG-KLIRRIDV--SAVKYVIWSDDGELVALV 162 (443)
T ss_dssp EE-T-T---------SS---EEEEE-----SSSEEEEETT-EEEEE-TTT---EEEEESS---E-EEEEE-TTSSEEEEE
T ss_pred cccc-ceEE----cCCc--ccceEEc----CcEEEEECCC-CEEEEEhhHc-ceeeEEec--CCCcEEEEECCCCEEEEE
Confidence 2211 1111 0111 2333322 4556555444 7999999855 56666653 248999999999999988
Q ss_pred eCCCeEEEEECCCC-----------ceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEeccc
Q 016974 269 SDDGTCRLFDIRTG-----------HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS 337 (379)
Q Consensus 269 s~D~~i~iwd~~~~-----------~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 337 (379)
+.| ++.|++-... ..+...... ...|.+.+|..+ -+|.+ +.. .|+.+- .+.. .++.+
T Consensus 163 t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~-----~~~IkSg~W~~d-~fiYt-T~~-~lkYl~--~Ge~-~~i~~ 230 (443)
T PF04053_consen 163 TKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEI-----SERIKSGCWVED-CFIYT-TSN-HLKYLV--NGET-GIIAH 230 (443)
T ss_dssp -S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE------S--SEEEEETT-EEEEE--TT-EEEEEE--TTEE-EEEEE
T ss_pred eCC-eEEEEEecchhcccccccCchhceEEEEEe-----cceeEEEEEEcC-EEEEE-cCC-eEEEEE--cCCc-ceEEE
Confidence 866 5667663321 012222110 123556666544 22222 222 455432 2221 11211
Q ss_pred ccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecC
Q 016974 338 LQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 373 (379)
Q Consensus 338 ~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~ 373 (379)
-..+++=+.+.|..+.|.....|+.|..+.++
T Consensus 231 ----ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 231 ----LDKPLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp -----SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred ----cCCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 13467777888877888888899998888765
No 344
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.66 E-value=0.00011 Score=70.55 Aligned_cols=108 Identities=22% Similarity=0.309 Sum_probs=81.0
Q ss_pred EEEEccCCCEEEEee----CCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCce
Q 016974 255 TVKFFPDGNRFGTGS----DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK 330 (379)
Q Consensus 255 ~v~~sp~g~~l~s~s----~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~ 330 (379)
-.+|+|...+++.++ ..|+|.||- .+|++-.... ..-.+++++|+|..-.|+.|..-|.+.+|...+.+
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt------~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e 92 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT------YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE 92 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc------cceehhhhccChHHHHHhhccccceeEEEecCCce
Confidence 357888888887775 356777774 3443211110 11236789999999999999999999999876544
Q ss_pred EEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecC
Q 016974 331 VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 373 (379)
Q Consensus 331 ~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~ 373 (379)
..... ..|..+|..+.|||+|+.|.++..-|.|.+|.++
T Consensus 93 ~htv~----~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 93 THTVV----ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeeec----cCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 33222 5699999999999999999999999999999987
No 345
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.63 E-value=0.056 Score=50.34 Aligned_cols=36 Identities=17% Similarity=0.232 Sum_probs=28.9
Q ss_pred CCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEE
Q 016974 298 PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL 333 (379)
Q Consensus 298 ~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~ 333 (379)
+++..+++||+|++||.-..+|.+.+....-.+...
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~ 252 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLC 252 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECcccceeE
Confidence 468999999999999999999999988754444333
No 346
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.0068 Score=55.80 Aligned_cols=143 Identities=17% Similarity=0.198 Sum_probs=90.7
Q ss_pred EEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCE-------EEEeeCCCeEEEEECCCCce-eEEEeecc
Q 016974 221 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNR-------FGTGSDDGTCRLFDIRTGHQ-LQVYYQQH 292 (379)
Q Consensus 221 ~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~-------l~s~s~D~~i~iwd~~~~~~-~~~~~~~~ 292 (379)
+|.++.....++--|+..+ +.+..+.-|.. |+-+.+.|+++. -+.|-.|..|.-||+|-... .-...+.+
T Consensus 348 il~~~~~~~~l~klDIE~G-KIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k 425 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERG-KIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK 425 (644)
T ss_pred EeeCCCCcCcceeeecccc-eeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc
Confidence 4456666667777788755 56777765554 788888887431 23455688899999884322 11111111
Q ss_pred CCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEe
Q 016974 293 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA 371 (379)
Q Consensus 293 ~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~ 371 (379)
--.......|.+-..+| +|++|+.+|.|++||- .++...+ ...+-..+|..+..+.||++|+.. .+.++-+-+
T Consensus 426 qy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKT---AlPgLG~~I~hVdvtadGKwil~T-c~tyLlLi~ 498 (644)
T KOG2395|consen 426 QYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKT---ALPGLGDAIKHVDVTADGKWILAT-CKTYLLLID 498 (644)
T ss_pred ccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhh---cccccCCceeeEEeeccCcEEEEe-cccEEEEEE
Confidence 11111234566655555 8999999999999996 3333322 235677899999999999998844 455554443
No 347
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.56 E-value=0.041 Score=47.11 Aligned_cols=211 Identities=14% Similarity=0.189 Sum_probs=113.8
Q ss_pred eccccccccEEEEEeeCCCCe-EEEEcCCCcEEEEECCCCceeeEeecCC-cceEEEEECCCCCEEEEeeCCCcEEEEEc
Q 016974 61 RTLQGHAGKVYSLDWTSERNR-IVSASQDGRLIVWNALTSQKTHAIKLPC-AWVMTCAFSPTGQSVACGGLDSVCSIFNL 138 (379)
Q Consensus 61 ~~l~gH~~~v~~~~~~~~~~~-l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~d~~i~iw~~ 138 (379)
+.+.|=.+.+..+.|+|+.+. ++.....+.|...+. +|+.+..+.... +-.-.+++..++.++++--.++.+.+.++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 466676777999999998665 555667777777775 578887776653 44677888888888887767889999988
Q ss_pred CCCCCCCCCcceeeee-----cccccceEEEEEecCCCceEEEeeCCCeEEEeecCC---CeeEEEecC-cc--ccCCcc
Q 016974 139 NSPTDKDGNLPVSRML-----SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT---GLRTSVFGG-EF--QSGHTA 207 (379)
Q Consensus 139 ~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~---~~~~~~~~~-~~--~~~h~~ 207 (379)
........ ......+ ..++..+-.++|.|.++.++ .+-......++.+.. +........ .. ......
T Consensus 94 ~~~~~~~~-~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~-v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 94 DDDTTSLD-RADVQKISLGFPNKGNKGFEGLAYDPKTNRLF-VAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp ----TT---EEEEEEEE---S---SS--EEEEEETTTTEEE-EEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred eccccccc-hhhceEEecccccCCCcceEEEEEcCCCCEEE-EEeCCCChhhEEEccccCccceeeccccccccccceec
Confidence 64322111 1100111 12344577899999765544 445555566665543 111111100 00 122345
Q ss_pred CeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEE--ec--c-----cCCeeEEEEccCCCEEEEeeCCCeEEEE
Q 016974 208 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF--HG--H-----EGDVNTVKFFPDGNRFGTGSDDGTCRLF 277 (379)
Q Consensus 208 ~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~--~~--h-----~~~v~~v~~sp~g~~l~s~s~D~~i~iw 277 (379)
.+.++.++|..+.+++.....+.|..+|.. + +++..+ .. | -.....|+|.++|+.+++ |+-+...+|
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d~~-G-~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELDRQ-G-RVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE-TT----EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEECCC-C-CEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 678899999989999999999999999854 2 333332 22 1 023678999999975554 455544443
No 348
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.56 E-value=0.012 Score=53.13 Aligned_cols=135 Identities=12% Similarity=0.179 Sum_probs=81.8
Q ss_pred CcEEEEEccCCc---cceEE--EecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCc-eeEEEeeccCCCCCCCeEE
Q 016974 229 STARLWDTRVAS---RAVRT--FHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH-QLQVYYQQHGENEIPHVTS 302 (379)
Q Consensus 229 ~~i~vwd~~~~~---~~~~~--~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~ 302 (379)
|.|.++++.... ..+.. -....++|++++-- ++ +|+.+. .+.|.+|++...+ ......... ...+.+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~----~~~i~s 134 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDS----PFYITS 134 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-B----SSSEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecc----eEEEEE
Confidence 889999987631 11221 12356889988865 44 454443 4789999998877 333222111 114555
Q ss_pred EEEccCCCEEEEEEecCcEEEEeCCC-ceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 303 IAFSISGRLLFAGYSNGDCYVWDTLL-AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 303 ~~fs~~g~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
+. ..+.+|+.|+....+.++.... ......+.. ......++++.|-+|++.++.++.+|.+.++.+..
T Consensus 135 l~--~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~--d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 135 LS--VFKNYILVGDAMKSVSLLRYDEENNKLILVAR--DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EE--EETTEEEEEESSSSEEEEEEETTTE-EEEEEE--ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred Ee--ccccEEEEEEcccCEEEEEEEccCCEEEEEEe--cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 54 4467999999888888764322 222222211 22345688888876667999999999999998874
No 349
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.53 E-value=0.01 Score=43.23 Aligned_cols=93 Identities=25% Similarity=0.417 Sum_probs=60.5
Q ss_pred CCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCC
Q 016974 218 NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEI 297 (379)
Q Consensus 218 ~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~ 297 (379)
..+.|+.|+.|..||+|+-. ..+..+.. ...|.++.-... ..++-+..+|+|-+|+-.. . .+ .....
T Consensus 14 g~~eLlvGs~D~~IRvf~~~---e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--R--lW-RiKSK--- 80 (111)
T PF14783_consen 14 GENELLVGSDDFEIRVFKGD---EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--R--LW-RIKSK--- 80 (111)
T ss_pred CcceEEEecCCcEEEEEeCC---cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--e--ee-eeccC---
Confidence 34678899999999999843 45555543 457888877655 5799999999999998532 1 11 11111
Q ss_pred CCeEEEE-EccCC---CEEEEEEecCcEEE
Q 016974 298 PHVTSIA-FSISG---RLLFAGYSNGDCYV 323 (379)
Q Consensus 298 ~~v~~~~-fs~~g---~~l~sg~~dg~i~i 323 (379)
..++++. |+.+| .-|++|.++|.|-+
T Consensus 81 ~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 81 NQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 1234443 44443 26888988887643
No 350
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.52 E-value=0.068 Score=48.86 Aligned_cols=260 Identities=17% Similarity=0.220 Sum_probs=125.0
Q ss_pred eCCCCeEEEE---------cCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCC---
Q 016974 76 TSERNRIVSA---------SQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTD--- 143 (379)
Q Consensus 76 ~~~~~~l~s~---------s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~--- 143 (379)
|||+++++.. +..+.+.|+|+.+++....... ...+....|+|+|+.++.... +.+.++++.....
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~~-~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVRD-NNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEET-TEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEec-CceEEEECCCCCeEEe
Confidence 4666665542 3356789999988654332222 455778899999999998864 5677776543210
Q ss_pred -CCCCcceeeeecccc---------cceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCc--cCeEE
Q 016974 144 -KDGNLPVSRMLSGHK---------GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHT--ADVLS 211 (379)
Q Consensus 144 -~~~~~~~~~~~~~h~---------~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~--~~v~~ 211 (379)
.+|.. ..+.|-. +.-..+-|+|++..++...-.+..|+.+.+.. . ...+. ..+..
T Consensus 79 T~dg~~---~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~------~----~~~~~~yp~~~~ 145 (353)
T PF00930_consen 79 TTDGEP---GIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPD------Y----SPPDSQYPEVES 145 (353)
T ss_dssp ES--TT---TEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEE------E----SSSTESS-EEEE
T ss_pred ccccce---eEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeec------c----CCccccCCcccc
Confidence 00100 0001110 11134679998765444444555565554321 0 00100 12333
Q ss_pred EEEeCCCCcEEEEecCCC--cEEEEEccCCccc-eEEE---ecccCCeeEEEEccCCCEEEEee--CCC---eEEEEECC
Q 016974 212 VSISGSNSRMFVSGSCDS--TARLWDTRVASRA-VRTF---HGHEGDVNTVKFFPDGNRFGTGS--DDG---TCRLFDIR 280 (379)
Q Consensus 212 ~~~~~~~~~~l~sg~~d~--~i~vwd~~~~~~~-~~~~---~~h~~~v~~v~~sp~g~~l~s~s--~D~---~i~iwd~~ 280 (379)
+.+-- .|..+. .+.|+|+...... +... ..-...+..+.|.+++..|+..- .+. .+.++|..
T Consensus 146 ~~YPk-------~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~ 218 (353)
T PF00930_consen 146 IRYPK-------AGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDAS 218 (353)
T ss_dssp EE--B-------TTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEEC
T ss_pred cccCC-------CCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECC
Confidence 33211 122222 3555677654321 1111 12234688999999998444433 322 46778887
Q ss_pred CCceeEEEeeccCCCCCCCeEEEEEc-cCCC-EEEEEEecC--cEEEEeCCCceEEEecccccCCccCceeE-EEECCCC
Q 016974 281 TGHQLQVYYQQHGENEIPHVTSIAFS-ISGR-LLFAGYSNG--DCYVWDTLLAKVVLNLGSLQNSHEGRITC-LGLSADG 355 (379)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~v~~~~fs-~~g~-~l~sg~~dg--~i~iwd~~~~~~~~~~~~~~~~h~~~v~~-~~~s~d~ 355 (379)
++...... ..........-....|. +++. +|.....+| .|++.+...+... .+ ....-.|.. +.+++++
T Consensus 219 tg~~~~~~-~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~l----T~G~~~V~~i~~~d~~~ 292 (353)
T PF00930_consen 219 TGETRVVL-EETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QL----TSGDWEVTSILGWDEDN 292 (353)
T ss_dssp TTTCEEEE-EEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ES----S-SSS-EEEEEEEECTS
T ss_pred CCceeEEE-EecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-cc----ccCceeecccceEcCCC
Confidence 76543333 22222222222355554 5555 555556777 4666676655533 22 223334533 6677877
Q ss_pred CeEE-EeeC
Q 016974 356 SALC-TGSW 363 (379)
Q Consensus 356 ~~l~-s~s~ 363 (379)
+.|. +|..
T Consensus 293 ~~iyf~a~~ 301 (353)
T PF00930_consen 293 NRIYFTANG 301 (353)
T ss_dssp SEEEEEESS
T ss_pred CEEEEEecC
Confidence 6554 4544
No 351
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.44 E-value=0.018 Score=53.55 Aligned_cols=157 Identities=19% Similarity=0.244 Sum_probs=88.9
Q ss_pred ceEEEEEecCCCceEEEe--eCC-CeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEE--
Q 016974 160 YVSCCQYVPDEDTHLITS--SGD-QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW-- 234 (379)
Q Consensus 160 ~v~~~~~~~~~~~~l~s~--~~d-~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vw-- 234 (379)
.+..-.|+|++....... ... ..+.++|+.++........ .+ ....-.|+|...+++++...|+...||
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~---~g---~~~~P~fspDG~~l~f~~~rdg~~~iy~~ 267 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF---NG---NNGAPAFSPDGSKLAFSSSRDGSPDIYLM 267 (425)
T ss_pred ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc---CC---ccCCccCCCCCCEEEEEECCCCCccEEEE
Confidence 344456777765432221 122 4688999988866554431 12 223345777667777888888876666
Q ss_pred EccCCccceEEEecccCCeeEEEEccCCCEEEEeeC-CCe--EEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCE
Q 016974 235 DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DGT--CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL 311 (379)
Q Consensus 235 d~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~-D~~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~ 311 (379)
|+... ....+..-.+.-..=.|+|||++|+-.++ .|. |.+.|+..+........ .+. -..-.+||||++
T Consensus 268 dl~~~--~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~-~~~-----~~~p~~SpdG~~ 339 (425)
T COG0823 268 DLDGK--NLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFS-GGG-----NSNPVWSPDGDK 339 (425)
T ss_pred cCCCC--cceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeecc-CCC-----CcCccCCCCCCE
Confidence 55432 23333322333335678999999987764 443 66666665543222211 111 125578999998
Q ss_pred EEEEEe-cCc--EEEEeCCCce
Q 016974 312 LFAGYS-NGD--CYVWDTLLAK 330 (379)
Q Consensus 312 l~sg~~-dg~--i~iwd~~~~~ 330 (379)
|+.-+. +|. |.+.|..++.
T Consensus 340 i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 340 IVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred EEEEeccCCceeeEEeccCCCC
Confidence 887664 344 5556654444
No 352
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.24 E-value=0.21 Score=47.91 Aligned_cols=273 Identities=14% Similarity=0.099 Sum_probs=134.8
Q ss_pred CCeEEEEcCCCcEEEEECCCCceeeEeecCCcc------eE--EEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcce
Q 016974 79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAW------VM--TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPV 150 (379)
Q Consensus 79 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~------v~--~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~ 150 (379)
+..++.++.|+.|.-.|..+|+........... +. .+++. ++..++.++.++.+.-+|..+.. ...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~-----~~W 134 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGK-----QVW 134 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCC-----Eee
Confidence 456777888999999999999988776543220 00 01111 22677777888888888876532 111
Q ss_pred eeeecccc---cceE-EEEEecCCCceEEEee---------CCCeEEEeecCCCeeEEEecCcccc-----C--------
Q 016974 151 SRMLSGHK---GYVS-CCQYVPDEDTHLITSS---------GDQTCVLWDITTGLRTSVFGGEFQS-----G-------- 204 (379)
Q Consensus 151 ~~~~~~h~---~~v~-~~~~~~~~~~~l~s~~---------~d~~i~~wd~~~~~~~~~~~~~~~~-----~-------- 204 (379)
......+. ..+. ...+. + ..++.++ .++.+.-+|..+|...-.+...... .
T Consensus 135 ~~~~~~~~~~~~~i~ssP~v~--~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~ 211 (488)
T cd00216 135 KFGNNDQVPPGYTMTGAPTIV--K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMW 211 (488)
T ss_pred eecCCCCcCcceEecCCCEEE--C-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCccee
Confidence 11111110 0011 01111 1 2333333 4678888899888654333211000 0
Q ss_pred -Cc-cCeE-EEEEeCCCCcEEEEecCCC------------------cEEEEEccCCccceEEEe--cccCC---e-eEEE
Q 016974 205 -HT-ADVL-SVSISGSNSRMFVSGSCDS------------------TARLWDTRVASRAVRTFH--GHEGD---V-NTVK 257 (379)
Q Consensus 205 -h~-~~v~-~~~~~~~~~~~l~sg~~d~------------------~i~vwd~~~~~~~~~~~~--~h~~~---v-~~v~ 257 (379)
+. ..+. +..+.+. ..+++.++.++ .|.-.|..+.+. .-.++ .|... . ....
T Consensus 212 ~~~g~~vw~~pa~d~~-~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~-~W~~~~~~~~~~~~~~~s~p~ 289 (488)
T cd00216 212 GPGGGTSWASPTYDPK-TNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV-KWFYQTTPHDLWDYDGPNQPS 289 (488)
T ss_pred cCCCCCccCCeeEeCC-CCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE-EEEeeCCCCCCcccccCCCCe
Confidence 00 0111 1222222 23445555444 566667665532 22221 11100 0 0001
Q ss_pred Ec----cCCC---EEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEE---------------
Q 016974 258 FF----PDGN---RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG--------------- 315 (379)
Q Consensus 258 ~s----p~g~---~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg--------------- 315 (379)
+. -+|. .++.++.+|.+...|.++|+.+-...... ..++.+| ..++.+
T Consensus 290 ~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~--------~~~~~~~--~~vyv~~~~~~~~~~~~~~~~ 359 (488)
T cd00216 290 LADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE--------QPMAYDP--GLVYLGAFHIPLGLPPQKKKR 359 (488)
T ss_pred EEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec--------cccccCC--ceEEEccccccccCcccccCC
Confidence 11 1333 57778899999999999998765432210 1123333 223222
Q ss_pred ---EecCcEEEEeCCCceEEEecccccCCcc----Cce--eEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 316 ---YSNGDCYVWDTLLAKVVLNLGSLQNSHE----GRI--TCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 316 ---~~dg~i~iwd~~~~~~~~~~~~~~~~h~----~~v--~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
..+|.|.-.|..+++.+.........+. .+. ..+. ..+..|+.++.||.|+.++...
T Consensus 360 ~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ald~~t 425 (488)
T cd00216 360 CKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRAFDATT 425 (488)
T ss_pred CCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEEEECCC
Confidence 1356788888887776654421100000 111 1111 2457888889999998887543
No 353
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.23 E-value=0.00086 Score=54.97 Aligned_cols=143 Identities=17% Similarity=0.135 Sum_probs=85.7
Q ss_pred EEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeE
Q 016974 222 FVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVT 301 (379)
Q Consensus 222 l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 301 (379)
+...+.|+.|+-++++......+.-.-|..- ...-.-+..++.|+.||.|.+|+........-... .+. .....
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~-s~~--e~i~~ 106 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVC-SGE--ESIDL 106 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhh-ccc--cccee
Confidence 3445677888777766432222211112111 11112456799999999999998752111100000 000 01112
Q ss_pred EEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCcc-CceeEEEECCCCCeEEEe--eCCCcEEEEecCc
Q 016974 302 SIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHE-GRITCLGLSADGSALCTG--SWDTNLKIWAFGG 374 (379)
Q Consensus 302 ~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~l~s~--s~D~~i~vw~~~~ 374 (379)
.+.--.++.+..++..||.|+.|+..-.+..... ..|+ .++..+..+.-+++|+++ |.|..++.|++..
T Consensus 107 ~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~----g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 107 GIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYV----GQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccccccccceeEEeccCCceeeeccccCceeeee----ccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 2333334558889999999999998776665444 4566 567777777778888888 9999999998876
No 354
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0024 Score=59.72 Aligned_cols=72 Identities=18% Similarity=0.395 Sum_probs=65.3
Q ss_pred cEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceE-EEEECCCCCEEEEeeCCCcEEEEEcCCC
Q 016974 69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVM-TCAFSPTGQSVACGGLDSVCSIFNLNSP 141 (379)
Q Consensus 69 ~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~-~~~~s~~g~~l~~~~~d~~i~iw~~~~~ 141 (379)
.|.-+.|+|.-.+||.+..+|.|.+...+ -+++.++..+...+. +++|.|||+.||.|-.||+|++.|...+
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~ 94 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKG 94 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence 47778999999999999999999999887 888899988877777 9999999999999999999999998754
No 355
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0016 Score=60.90 Aligned_cols=73 Identities=14% Similarity=0.171 Sum_probs=60.3
Q ss_pred CeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCcee-EEEECCCCCeEEEeeCCCcEEEEecCcee
Q 016974 299 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRIT-CLGLSADGSALCTGSWDTNLKIWAFGGYR 376 (379)
Q Consensus 299 ~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~-~~~~s~d~~~l~s~s~D~~i~vw~~~~~~ 376 (379)
.+..+.|+|.-..||.+..+|.|.+..+. ...+.++ .-|..+++ +++|.|||+.||.|=.||+|++-|+.+..
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwti----p~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTI----PIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEec-cceeEec----cCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence 46788999999999999999999998766 4444444 33556676 99999999999999999999999988743
No 356
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.18 E-value=0.21 Score=46.81 Aligned_cols=245 Identities=14% Similarity=0.156 Sum_probs=118.7
Q ss_pred EEEEEeeCCCCeEEEE-cCC----CcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCC-----------cE
Q 016974 70 VYSLDWTSERNRIVSA-SQD----GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDS-----------VC 133 (379)
Q Consensus 70 v~~~~~~~~~~~l~s~-s~D----~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~-----------~i 133 (379)
+....++|++++||-+ +.. .++++.|+.+++.+...- .......+.|.++++.++....+. .+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i-~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI-ENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE-EEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc-cccccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 4467889999987643 333 369999999997654321 111223489999998877765443 26
Q ss_pred EEEEcCCCCCCCCCcceeeeeccccc-c-eEEEEEecCCCceEEEeeCC---CeEEEeecCCC----eeEEEecCccccC
Q 016974 134 SIFNLNSPTDKDGNLPVSRMLSGHKG-Y-VSCCQYVPDEDTHLITSSGD---QTCVLWDITTG----LRTSVFGGEFQSG 204 (379)
Q Consensus 134 ~iw~~~~~~~~~~~~~~~~~~~~h~~-~-v~~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~----~~~~~~~~~~~~~ 204 (379)
..|.+.++... -...+..... . ...+..++++...++..... ..+.+.|+..+ .....+ ..
T Consensus 205 ~~~~~gt~~~~-----d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l-----~~ 274 (414)
T PF02897_consen 205 YRHKLGTPQSE-----DELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLL-----SP 274 (414)
T ss_dssp EEEETTS-GGG------EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEE-----EE
T ss_pred EEEECCCChHh-----CeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEE-----eC
Confidence 67776543211 0112222222 2 45667777765444444333 34677777653 111111 11
Q ss_pred CccCe-EEEEEeCCCCcEEEEec---CCCcEEEEEccCCcc--ceEEEecccCCeeEEEEccCCCEEEEe-eCCC--eEE
Q 016974 205 HTADV-LSVSISGSNSRMFVSGS---CDSTARLWDTRVASR--AVRTFHGHEGDVNTVKFFPDGNRFGTG-SDDG--TCR 275 (379)
Q Consensus 205 h~~~v-~~~~~~~~~~~~l~sg~---~d~~i~vwd~~~~~~--~~~~~~~h~~~v~~v~~sp~g~~l~s~-s~D~--~i~ 275 (379)
....+ ..+... ++.+++... .++.|...++..... ....+..|...+.-..+...+++|+.. -.++ .|+
T Consensus 275 ~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~ 352 (414)
T PF02897_consen 275 REDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLR 352 (414)
T ss_dssp SSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEE
T ss_pred CCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEE
Confidence 12222 223222 334444332 334555556654432 122444555533333444445555544 4444 588
Q ss_pred EEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEE----ecCcEEEEeCCCceE
Q 016974 276 LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY----SNGDCYVWDTLLAKV 331 (379)
Q Consensus 276 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~----~dg~i~iwd~~~~~~ 331 (379)
++++..+........ ...+.|..+...+++..+.... .-++++.||+.+++.
T Consensus 353 v~~~~~~~~~~~~~~----p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 353 VYDLDDGKESREIPL----PEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEETT-TEEEEEEES----SSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred EEECCCCcEEeeecC----CcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 899882332222211 1123355555555555433322 234677777766554
No 357
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.15 E-value=0.18 Score=45.45 Aligned_cols=175 Identities=13% Similarity=0.194 Sum_probs=97.9
Q ss_pred CeEEEeecCCC----eeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEE-EecccCCeeE
Q 016974 181 QTCVLWDITTG----LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT-FHGHEGDVNT 255 (379)
Q Consensus 181 ~~i~~wd~~~~----~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~-~~~h~~~v~~ 255 (379)
|.|.++++... .++.... .....+.|.++... ++.++++. ++.|.+|++......... +......+.+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~---~~~~~g~V~ai~~~--~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~s 134 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIH---STEVKGPVTAICSF--NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITS 134 (321)
T ss_dssp EEEEEEEECSS-----EEEEEE---EEEESS-EEEEEEE--TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEE
T ss_pred cEEEEEEEEcccccceEEEEEE---EEeecCcceEhhhh--CCEEEEee--cCEEEEEEccCcccchhhheecceEEEEE
Confidence 88999999873 2222221 12345678888877 44444433 478999999866412222 2212234545
Q ss_pred EEEccCCCEEEEeeCCCeEEEEECCC-CceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCC------
Q 016974 256 VKFFPDGNRFGTGSDDGTCRLFDIRT-GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL------ 328 (379)
Q Consensus 256 v~~sp~g~~l~s~s~D~~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~------ 328 (379)
+. ..+++++.|.....+.++.... ...+....... ...+++++.|-++++.+++++.+|.+.++....
T Consensus 135 l~--~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~---~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~ 209 (321)
T PF03178_consen 135 LS--VFKNYILVGDAMKSVSLLRYDEENNKLILVARDY---QPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSR 209 (321)
T ss_dssp EE--EETTEEEEEESSSSEEEEEEETTTE-EEEEEEES---S-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTT
T ss_pred Ee--ccccEEEEEEcccCEEEEEEEccCCEEEEEEecC---CCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccc
Confidence 44 4466999998878888775443 33343333322 233588899987778999999999999987532
Q ss_pred -ce-EEEecccccCCccCceeEE---EECCC--CC------eEEEeeCCCcEEE
Q 016974 329 -AK-VVLNLGSLQNSHEGRITCL---GLSAD--GS------ALCTGSWDTNLKI 369 (379)
Q Consensus 329 -~~-~~~~~~~~~~~h~~~v~~~---~~s~d--~~------~l~s~s~D~~i~v 369 (379)
+. .......+ .....|+++ ++.|. +. .++-++.+|.|-+
T Consensus 210 ~~~~~L~~~~~f--~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 210 DGDPKLERISSF--HLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp TTTTBEEEEEEE--E-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred cccccceeEEEE--ECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 11 11111111 123567777 55552 22 3777889998873
No 358
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.15 E-value=0.17 Score=45.02 Aligned_cols=126 Identities=17% Similarity=0.167 Sum_probs=74.4
Q ss_pred EEEEccCCccceEEEecccCCeeEEEEccCCCEEEEe-eCCCeEEEEECCC--Cc---eeEEEeeccCCCCCCCeEEEEE
Q 016974 232 RLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRT--GH---QLQVYYQQHGENEIPHVTSIAF 305 (379)
Q Consensus 232 ~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~-s~D~~i~iwd~~~--~~---~~~~~~~~~~~~~~~~v~~~~f 305 (379)
.+|-+......++.+..|-..-+.++||||++.+..+ +..+.|.-|++.. +. ....+.... +.+..-.++.
T Consensus 144 ~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~---~~G~PDG~~v 220 (307)
T COG3386 144 SLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDE---EPGLPDGMAV 220 (307)
T ss_pred eEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccC---CCCCCCceEE
Confidence 3554442234455555555566899999999877665 4557788777642 11 111111111 1222346777
Q ss_pred ccCCCEEEEEEecC-cEEEEeCCCceEEEecccccCCccCceeEEEEC-CCCCeEEEeeCCC
Q 016974 306 SISGRLLFAGYSNG-DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS-ADGSALCTGSWDT 365 (379)
Q Consensus 306 s~~g~~l~sg~~dg-~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s-~d~~~l~s~s~D~ 365 (379)
+.+|.+-+++..+| .|.+|+.. ++.+.... -....+++++|- |+.+.|...+...
T Consensus 221 DadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~----lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 221 DADGNLWVAAVWGGGRVVRFNPD-GKLLGEIK----LPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred eCCCCEEEecccCCceEEEECCC-CcEEEEEE----CCCCCCccceEeCCCcCEEEEEecCC
Confidence 88888776555554 89999976 66665542 222567888884 6666666555543
No 359
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.14 E-value=0.00071 Score=55.44 Aligned_cols=105 Identities=10% Similarity=0.142 Sum_probs=61.9
Q ss_pred CceEEEeeCCCeEEEeecCCC-eeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecc
Q 016974 171 DTHLITSSGDQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH 249 (379)
Q Consensus 171 ~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h 249 (379)
...++.|+.+|.|.+|..... ...-.. ..-...+.+.......+.+..+++.|+.||.|.+... +.+...-.|
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~-----~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~-k~~g~~g~h 143 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRV-----CSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN-KVLGYVGQH 143 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhh-----hcccccceeccccccccceeEEeccCCceeeeccccC-ceeeeeccc
Confidence 456899999999999876521 000000 0111122222233344558889999999999998755 334444445
Q ss_pred c-CCeeEEEEccCCCEEEEe--eCCCeEEEEECCC
Q 016974 250 E-GDVNTVKFFPDGNRFGTG--SDDGTCRLFDIRT 281 (379)
Q Consensus 250 ~-~~v~~v~~sp~g~~l~s~--s~D~~i~iwd~~~ 281 (379)
+ .++.....+..+..++.+ |.|..++.|++..
T Consensus 144 ~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 144 NFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 5 455555555555566666 6666677776653
No 360
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.0022 Score=63.54 Aligned_cols=101 Identities=27% Similarity=0.352 Sum_probs=73.4
Q ss_pred CCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccC
Q 016974 261 DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQN 340 (379)
Q Consensus 261 ~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~ 340 (379)
.+..++.|++-|.+-.+|+... +.-+ ..+++..++|++++|+.+|++++.|..+|.|.+||...++....+.....
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~--~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPL--HQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchh--hcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 4557888888888888887653 1111 22344567899999999999999999999999999988777666533333
Q ss_pred CccCceeEEEECCCCCeEEEeeCCCc
Q 016974 341 SHEGRITCLGLSADGSALCTGSWDTN 366 (379)
Q Consensus 341 ~h~~~v~~~~~s~d~~~l~s~s~D~~ 366 (379)
.|.+ |.-+.+..++..+.++..-|.
T Consensus 174 p~t~-vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 174 PVTG-VIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred ccce-EEEEEEeCCCcEEEEccCCCc
Confidence 3443 444556667778888888886
No 361
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.11 E-value=0.016 Score=53.31 Aligned_cols=221 Identities=14% Similarity=0.176 Sum_probs=101.9
Q ss_pred ccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEee--c------CCcceEEEEEC-----CCC---CEEE
Q 016974 62 TLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK--L------PCAWVMTCAFS-----PTG---QSVA 125 (379)
Q Consensus 62 ~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~--~------~~~~v~~~~~s-----~~g---~~l~ 125 (379)
.+....++|++++.|. =.++|.|..+|++.|-|+.....++.-. . ....+.++.|+ .|+ -.+.
T Consensus 81 l~~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 81 LLDAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp EE---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred heeccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 3455688999999874 4599999999999999997666554422 1 12346667665 233 4678
Q ss_pred EeeCCCcEEEEEcCCCCCCCCCcc--eeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCcccc
Q 016974 126 CGGLDSVCSIFNLNSPTDKDGNLP--VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS 203 (379)
Q Consensus 126 ~~~~d~~i~iw~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~ 203 (379)
+|...|.+.+|.+..... +.+. .......+.+.|.. |...|..++..........+
T Consensus 160 vGTn~G~v~~fkIlp~~~--g~f~v~~~~~~~~~~~~i~~-------------------I~~i~~~~G~~a~At~~~~~- 217 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSN--GRFSVQFAGATTNHDSPILS-------------------IIPINADTGESALATISAMQ- 217 (395)
T ss_dssp EEETTSEEEEEEEEE-GG--G-EEEEEEEEE--SS----E-------------------EEEEETTT--B-B-BHHHHH-
T ss_pred EEeCCCCEEEEEEecCCC--CceEEEEeeccccCCCceEE-------------------EEEEECCCCCcccCchhHhh-
Confidence 888889988887742110 1110 00000111222221 22223333221111000000
Q ss_pred CCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEE-----ccCCCEEEEeeCCCeEEEEE
Q 016974 204 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKF-----FPDGNRFGTGSDDGTCRLFD 278 (379)
Q Consensus 204 ~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~-----sp~g~~l~s~s~D~~i~iwd 278 (379)
+-...+. -..+++. ..+..+|++.....+...+.+. ..-....+.+ ...+..|++-..+|.|+++.
T Consensus 218 ~l~~g~~-------i~g~vVv-vSe~~irv~~~~~~k~~~K~~~-~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~S 288 (395)
T PF08596_consen 218 GLSKGIS-------IPGYVVV-VSESDIRVFKPPKSKGAHKSFD-DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYS 288 (395)
T ss_dssp GGGGT-----------EEEEE-E-SSEEEEE-TT---EEEEE-S-S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEE
T ss_pred ccccCCC-------cCcEEEE-EcccceEEEeCCCCcccceeec-cccccceEEEEeecccCCceEEEEEECCCcEEEEE
Confidence 0000000 0113333 3356799998775544444442 2222333444 23566788889999999999
Q ss_pred CCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEE
Q 016974 279 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG 315 (379)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg 315 (379)
+-..+.+....-.... ....+...+|+++|..++-.
T Consensus 289 LP~Lkei~~~~l~~~~-d~~~~~~ssis~~Gdi~~~~ 324 (395)
T PF08596_consen 289 LPSLKEIKSVSLPPPL-DSRRLSSSSISRNGDIFYWT 324 (395)
T ss_dssp TTT--EEEEEE-SS----HHHHTT-EE-TTS-EEEE-
T ss_pred CCCchHhhcccCCCcc-ccccccccEECCCCCEEEEe
Confidence 9988777655332110 11123456778889866554
No 362
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.09 E-value=0.055 Score=50.64 Aligned_cols=140 Identities=19% Similarity=0.267 Sum_probs=74.2
Q ss_pred cceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccC
Q 016974 159 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV 238 (379)
Q Consensus 159 ~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~ 238 (379)
.....+.++|++. +++. ..||...++.... .+.... +......|.+ .++ +|+-...+.|.++.--.
T Consensus 33 ~~p~~ls~npngr-~v~V-~g~geY~iyt~~~-~r~k~~---------G~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~ 98 (443)
T PF04053_consen 33 IYPQSLSHNPNGR-FVLV-CGDGEYEIYTALA-WRNKAF---------GSGLSFVWSS-RNR-YAVLESSSTIKIYKNFK 98 (443)
T ss_dssp S--SEEEE-TTSS-EEEE-EETTEEEEEETTT-TEEEEE---------EE-SEEEE-T-SSE-EEEE-TTS-EEEEETTE
T ss_pred cCCeeEEECCCCC-EEEE-EcCCEEEEEEccC-Cccccc---------CceeEEEEec-Ccc-EEEEECCCeEEEEEcCc
Confidence 3456789999764 4444 6788888887432 222222 2334566765 444 56666678899963211
Q ss_pred CccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEec
Q 016974 239 ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN 318 (379)
Q Consensus 239 ~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~d 318 (379)
. .....++. +..+..+-. |..|...+.+ .|.+||+.+++.+..+. ..+|..+.||++|++++..+.+
T Consensus 99 ~-~~~k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~-------v~~vk~V~Ws~~g~~val~t~~ 165 (443)
T PF04053_consen 99 N-EVVKSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRID-------VSAVKYVIWSDDGELVALVTKD 165 (443)
T ss_dssp E--TT------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEES-------S-E-EEEEE-TTSSEEEEE-S-
T ss_pred c-ccceEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEe-------cCCCcEEEEECCCCEEEEEeCC
Confidence 1 12122221 122344332 7777776655 89999999998877652 2247899999999999988765
Q ss_pred CcEEEEeC
Q 016974 319 GDCYVWDT 326 (379)
Q Consensus 319 g~i~iwd~ 326 (379)
.+++++.
T Consensus 166 -~i~il~~ 172 (443)
T PF04053_consen 166 -SIYILKY 172 (443)
T ss_dssp -SEEEEEE
T ss_pred -eEEEEEe
Confidence 6777764
No 363
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.08 E-value=0.15 Score=43.12 Aligned_cols=61 Identities=15% Similarity=0.162 Sum_probs=46.0
Q ss_pred CCeEEEEcCCCcEEEEECCCCceeeEeecCCcceE-EEEECCCCCEEEEeeCCCcEEEEEcCC
Q 016974 79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVM-TCAFSPTGQSVACGGLDSVCSIFNLNS 140 (379)
Q Consensus 79 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~-~~~~s~~g~~l~~~~~d~~i~iw~~~~ 140 (379)
|+.++.|...|.+++-+..+|.+...+..... |. .....+++..+.+++.|++....|...
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~-vk~~a~~d~~~glIycgshd~~~yalD~~~ 124 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILET-VKVRAQCDFDGGLIYCGSHDGNFYALDPKT 124 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhh-hccceEEcCCCceEEEecCCCcEEEecccc
Confidence 56788899999999999999977665543221 22 223578899999999999988887654
No 364
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.03 E-value=0.33 Score=46.52 Aligned_cols=245 Identities=16% Similarity=0.165 Sum_probs=121.4
Q ss_pred CeEEEEcCCCcEEEEECCCCceeeEeecCCcc--eEEEEECC--CCCEEEEee---------CCCcEEEEEcCCCCCCCC
Q 016974 80 NRIVSASQDGRLIVWNALTSQKTHAIKLPCAW--VMTCAFSP--TGQSVACGG---------LDSVCSIFNLNSPTDKDG 146 (379)
Q Consensus 80 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~--v~~~~~s~--~g~~l~~~~---------~d~~i~iw~~~~~~~~~~ 146 (379)
..++.++.|+.|+-+|..+|+.+......... -..+.-+| .+..++.++ .++.+.-+|..+..
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~---- 186 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGK---- 186 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCc----
Confidence 57778889999999999999998776654321 00011111 123333333 34556666654322
Q ss_pred Ccceeeeec-----------------ccc-cceE-EEEEecCCCceEEEeeCCC------------------eEEEeecC
Q 016974 147 NLPVSRMLS-----------------GHK-GYVS-CCQYVPDEDTHLITSSGDQ------------------TCVLWDIT 189 (379)
Q Consensus 147 ~~~~~~~~~-----------------~h~-~~v~-~~~~~~~~~~~l~s~~~d~------------------~i~~wd~~ 189 (379)
........ ++. ..+. ...+.+.+ ..++.++.++ .|.-.|+.
T Consensus 187 -~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~-g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~ 264 (488)
T cd00216 187 -LLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKT-NLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDAD 264 (488)
T ss_pred -eeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCC-CEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCC
Confidence 10000000 000 0111 12222222 3455555454 68888998
Q ss_pred CCeeEEEecCccc-----cCCccCe-EEEE-EeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCC
Q 016974 190 TGLRTSVFGGEFQ-----SGHTADV-LSVS-ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG 262 (379)
Q Consensus 190 ~~~~~~~~~~~~~-----~~h~~~v-~~~~-~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g 262 (379)
+|...=.+..... ......+ ..+. .......+++.++.+|.+...|.++.. .+-..... ...++.+| +
T Consensus 265 tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~-~~W~~~~~---~~~~~~~~-~ 339 (488)
T cd00216 265 TGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGK-LISARPEV---EQPMAYDP-G 339 (488)
T ss_pred CCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCc-EeeEeEee---ccccccCC-c
Confidence 8865543321100 0111111 1111 111111357778889999999988663 33222110 11233344 2
Q ss_pred CEEEE-----------------eeCCCeEEEEECCCCceeEEEeeccCC-C--CCCCeEEEEEccCCCEEEEEEecCcEE
Q 016974 263 NRFGT-----------------GSDDGTCRLFDIRTGHQLQVYYQQHGE-N--EIPHVTSIAFSISGRLLFAGYSNGDCY 322 (379)
Q Consensus 263 ~~l~s-----------------~s~D~~i~iwd~~~~~~~~~~~~~~~~-~--~~~~v~~~~fs~~g~~l~sg~~dg~i~ 322 (379)
..++. ...+|.+.-.|+.+|+.+-........ . ...+...-.....+.+|+.|+.||.|+
T Consensus 340 ~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ 419 (488)
T cd00216 340 LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFR 419 (488)
T ss_pred eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEE
Confidence 22221 124677888898888765433211000 0 000110001123567899999999999
Q ss_pred EEeCCCceEEEec
Q 016974 323 VWDTLLAKVVLNL 335 (379)
Q Consensus 323 iwd~~~~~~~~~~ 335 (379)
.+|..+++.+...
T Consensus 420 ald~~tG~~lW~~ 432 (488)
T cd00216 420 AFDATTGKELWKF 432 (488)
T ss_pred EEECCCCceeeEE
Confidence 9999999887665
No 365
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.03 E-value=0.073 Score=38.89 Aligned_cols=100 Identities=24% Similarity=0.303 Sum_probs=61.2
Q ss_pred eeEEEEcc-CC---CEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCC
Q 016974 253 VNTVKFFP-DG---NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (379)
Q Consensus 253 v~~v~~sp-~g---~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~ 328 (379)
|+++++.. ++ +.|+.||+|..||+|+-. ..+..+. +...|++++-... ..++-|..+|+|-+|+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~------e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT------ETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe------cccceEEEEEcCC-CEEEEEecCCEEEEEeCcc
Confidence 56666654 32 579999999999999843 3333332 1235777776655 5678899999999998532
Q ss_pred ceEEEecccccCCccCceeEEEECC---CC-CeEEEeeCCCcEE
Q 016974 329 AKVVLNLGSLQNSHEGRITCLGLSA---DG-SALCTGSWDTNLK 368 (379)
Q Consensus 329 ~~~~~~~~~~~~~h~~~v~~~~~s~---d~-~~l~s~s~D~~i~ 368 (379)
.....+ +.| .+.++++.. || .-|++|=.+|.|-
T Consensus 73 --RlWRiK---SK~--~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 --RLWRIK---SKN--QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred --eeeeec---cCC--CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 222221 222 356666532 33 2577776677653
No 366
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.99 E-value=0.29 Score=45.19 Aligned_cols=199 Identities=14% Similarity=0.133 Sum_probs=124.0
Q ss_pred EEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEec--CCCcEEEEEccCCc
Q 016974 163 CCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS--CDSTARLWDTRVAS 240 (379)
Q Consensus 163 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~--~d~~i~vwd~~~~~ 240 (379)
.+...+.+.+..+....++.|.+.|..+........ .+. ....+++.+.+..+.++-. .++.+.+.|.....
T Consensus 78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~----vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~ 151 (381)
T COG3391 78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIP----VGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK 151 (381)
T ss_pred ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEee----ecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe
Confidence 456667766677777778999999976654443332 122 3456777776666666666 46888888876553
Q ss_pred cceEEEecccCCeeEEEEccCCCEEEEe-eCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEec-
Q 016974 241 RAVRTFHGHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN- 318 (379)
Q Consensus 241 ~~~~~~~~h~~~v~~v~~sp~g~~l~s~-s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~d- 318 (379)
.......+ ..+ ..++++|+|..+... ..+++|.+.|........ -...........-..+.++|+|+++......
T Consensus 152 ~~~~~~vG-~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~ 228 (381)
T COG3391 152 VTATIPVG-NTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGS 228 (381)
T ss_pred EEEEEecC-CCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccC
Confidence 33332222 234 889999999965544 578999999976654332 1000000111123578999999977765443
Q ss_pred --CcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCC-CcEEEEecC
Q 016974 319 --GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD-TNLKIWAFG 373 (379)
Q Consensus 319 --g~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D-~~i~vw~~~ 373 (379)
+.+...|..++......... .-. ....+.++|+|+++.+.... +++.+-+..
T Consensus 229 ~~~~v~~id~~~~~v~~~~~~~--~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~ 283 (381)
T COG3391 229 GSNNVLKIDTATGNVTATDLPV--GSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGA 283 (381)
T ss_pred CCceEEEEeCCCceEEEecccc--ccC-CCCceeECCCCCEEEEEecCCCeEEEEeCC
Confidence 58999998877665542111 111 23557889999998887444 667666543
No 367
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.93 E-value=0.056 Score=52.60 Aligned_cols=161 Identities=17% Similarity=0.186 Sum_probs=83.3
Q ss_pred cCeEEEEEeCCCCcEEEEec-----CCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCC-CeEEEEECC
Q 016974 207 ADVLSVSISGSNSRMFVSGS-----CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD-GTCRLFDIR 280 (379)
Q Consensus 207 ~~v~~~~~~~~~~~~l~sg~-----~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D-~~i~iwd~~ 280 (379)
..+.+.++++......++.. .|..-.+|=............+. ....-.|+|||..|++.++. ..+++.+-.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccC
Confidence 35667778875554444441 24433444322222222223332 37788999999988887644 234444332
Q ss_pred CCceeEEEeeccCC---CCCCCeEEEEEccCCCEEEEEEecCcEEE---EeCCCceEEE-ecccccCCccCceeEEEECC
Q 016974 281 TGHQLQVYYQQHGE---NEIPHVTSIAFSISGRLLFAGYSNGDCYV---WDTLLAKVVL-NLGSLQNSHEGRITCLGLSA 353 (379)
Q Consensus 281 ~~~~~~~~~~~~~~---~~~~~v~~~~fs~~g~~l~sg~~dg~i~i---wd~~~~~~~~-~~~~~~~~h~~~v~~~~~s~ 353 (379)
....+.......+. .....|..+.|||||..|+.-. +|.|++ -....+.... ........-...+..++|.+
T Consensus 428 ~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~ 506 (591)
T PRK13616 428 ATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRT 506 (591)
T ss_pred CCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEec
Confidence 22222211111111 1123599999999999888765 577776 3323332111 00001112233457899999
Q ss_pred CCCeEEEeeCCCcEEEEe
Q 016974 354 DGSALCTGSWDTNLKIWA 371 (379)
Q Consensus 354 d~~~l~s~s~D~~i~vw~ 371 (379)
++.++ .+..++...+|.
T Consensus 507 ~~~L~-V~~~~~~~~v~~ 523 (591)
T PRK13616 507 GDSLV-VGRSDPEHPVWY 523 (591)
T ss_pred CCEEE-EEecCCCCceEE
Confidence 99865 444455444554
No 368
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.73 E-value=0.15 Score=47.33 Aligned_cols=140 Identities=16% Similarity=0.210 Sum_probs=85.3
Q ss_pred eEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCC-------CcEEEEecCCCcEEEEEccCCcc-ceE
Q 016974 173 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN-------SRMFVSGSCDSTARLWDTRVASR-AVR 244 (379)
Q Consensus 173 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-------~~~l~sg~~d~~i~vwd~~~~~~-~~~ 244 (379)
.|.++.....+.-.|++.|..+.... -+.+ |.-+.+.|.. ... +.|-.|..|.-||.|.... .+.
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk-----~~~d-i~mv~~t~d~K~~Ql~~e~T-lvGLs~n~vfriDpRv~~~~kl~ 420 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWK-----FEDD-INMVDITPDFKFAQLTSEQT-LVGLSDNSVFRIDPRVQGKNKLA 420 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEee-----ccCC-cceeeccCCcchhccccccc-EEeecCCceEEecccccCcceee
Confidence 45566777778888888886554431 1211 3333333211 112 3477788999999886544 222
Q ss_pred EEeccc----CCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCc
Q 016974 245 TFHGHE----GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGD 320 (379)
Q Consensus 245 ~~~~h~----~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~ 320 (379)
.-++|. ....|.+-..+| +||.||.+|.||+||- .+...++..... ..+|..+..+.+|++|++- .+..
T Consensus 421 ~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgL----G~~I~hVdvtadGKwil~T-c~ty 493 (644)
T KOG2395|consen 421 VVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGL----GDAIKHVDVTADGKWILAT-CKTY 493 (644)
T ss_pred eeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhccccc----CCceeeEEeeccCcEEEEe-cccE
Confidence 233332 234555554455 7999999999999995 555444433322 2468999999999998744 5556
Q ss_pred EEEEeC
Q 016974 321 CYVWDT 326 (379)
Q Consensus 321 i~iwd~ 326 (379)
+.+-++
T Consensus 494 LlLi~t 499 (644)
T KOG2395|consen 494 LLLIDT 499 (644)
T ss_pred EEEEEE
Confidence 666654
No 369
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.68 E-value=0.53 Score=43.53 Aligned_cols=265 Identities=18% Similarity=0.214 Sum_probs=152.3
Q ss_pred EEEEEeeCCCCeEEEEc-CCCcEEEEECCCCceeeEeecCCcceEEEEECCCCC-EEEEeeCCCcEEEEEcCCCCCCCCC
Q 016974 70 VYSLDWTSERNRIVSAS-QDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQ-SVACGGLDSVCSIFNLNSPTDKDGN 147 (379)
Q Consensus 70 v~~~~~~~~~~~l~s~s-~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~ 147 (379)
...+...+++..+.... ....+..-+................-..+++++.+. ..++...+..+.+.|......
T Consensus 33 ~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~---- 108 (381)
T COG3391 33 PGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV---- 108 (381)
T ss_pred CceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccce----
Confidence 34566677775433322 222455555442222222222223345677888887 455555668899988554221
Q ss_pred cceeeeecccccceEEEEEecCCCceEEEee--CCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEe
Q 016974 148 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSS--GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG 225 (379)
Q Consensus 148 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~--~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg 225 (379)
......|. ....+++.|++....++-. .++++.+.|..+........ .+. .+ ..+++.+.....+++-
T Consensus 109 --~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~----vG~-~P-~~~a~~p~g~~vyv~~ 178 (381)
T COG3391 109 --LGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP----VGN-TP-TGVAVDPDGNKVYVTN 178 (381)
T ss_pred --eeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe----cCC-Cc-ceEEECCCCCeEEEEe
Confidence 11112222 3446788887755555555 47889999988776555432 111 12 6777887666566777
Q ss_pred cCCCcEEEEEccCCccceE-E---EecccCCeeEEEEccCCCEEEEeeCC---CeEEEEECCCCceeEEEeeccCCCCCC
Q 016974 226 SCDSTARLWDTRVASRAVR-T---FHGHEGDVNTVKFFPDGNRFGTGSDD---GTCRLFDIRTGHQLQVYYQQHGENEIP 298 (379)
Q Consensus 226 ~~d~~i~vwd~~~~~~~~~-~---~~~h~~~v~~v~~sp~g~~l~s~s~D---~~i~iwd~~~~~~~~~~~~~~~~~~~~ 298 (379)
..++.|.+.|.... ...+ . ...-...-..+.++|+|.++...-.. +.+...|..++.....-.... ..
T Consensus 179 ~~~~~v~vi~~~~~-~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~---~~- 253 (381)
T COG3391 179 SDDNTVSVIDTSGN-SVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVG---SG- 253 (381)
T ss_pred cCCCeEEEEeCCCc-ceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccc---cC-
Confidence 78899999996543 2221 0 01112234678999999976555433 589999988876554311111 11
Q ss_pred CeEEEEEccCCCEEEEEEec-CcEEEEeCCCceEEEecccccCCccCceeEEEECCC
Q 016974 299 HVTSIAFSISGRLLFAGYSN-GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD 354 (379)
Q Consensus 299 ~v~~~~fs~~g~~l~sg~~d-g~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d 354 (379)
....+.++|+|+++.+.... +.+.+-|..+............. ...+..+++.+.
T Consensus 254 ~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~-~~~~~~~~~~~~ 309 (381)
T COG3391 254 APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEA-LGEPVSIAISPL 309 (381)
T ss_pred CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccc-cccceeccceee
Confidence 23568899999999888544 78999998777666554332221 223455555543
No 370
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.64 E-value=0.56 Score=43.41 Aligned_cols=79 Identities=24% Similarity=0.187 Sum_probs=48.4
Q ss_pred eEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECC--------------CCCeEEE-eeCC
Q 016974 300 VTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA--------------DGSALCT-GSWD 364 (379)
Q Consensus 300 v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~--------------d~~~l~s-~s~D 364 (379)
+.+++.+|++++.|+.++=|.|.++|+.++..+..++......-+.+....-.. ...+|+. +-.=
T Consensus 310 ~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprR 389 (415)
T PF14655_consen 310 GESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRR 389 (415)
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEeccC
Confidence 678999999999999888899999999887665554322111111111110000 1224443 5557
Q ss_pred CcEEEEecCceeec
Q 016974 365 TNLKIWAFGGYRRV 378 (379)
Q Consensus 365 ~~i~vw~~~~~~~~ 378 (379)
|.|-||.+..-.|+
T Consensus 390 g~lEvW~~~~g~Rv 403 (415)
T PF14655_consen 390 GILEVWSMRQGPRV 403 (415)
T ss_pred CeEEEEecCCCCEE
Confidence 88999988665443
No 371
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.58 E-value=0.0092 Score=36.33 Aligned_cols=33 Identities=12% Similarity=0.330 Sum_probs=29.7
Q ss_pred ccCceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 342 HEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 342 h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
....|.+++|+|....||.|+.||.|.|++++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 345799999999999999999999999999854
No 372
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.52 E-value=0.28 Score=41.44 Aligned_cols=70 Identities=19% Similarity=0.303 Sum_probs=54.5
Q ss_pred CCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEec
Q 016974 261 DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL 335 (379)
Q Consensus 261 ~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~ 335 (379)
-|++++.|+..|.+.+.+.++|.++..+..... .+ .+...++++..|..|+.|++.+.-|..+...+...
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~---vk--~~a~~d~~~glIycgshd~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILET---VK--VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKS 131 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhh---hc--cceEEcCCCceEEEecCCCcEEEecccccceEEec
Confidence 577899999999999999999988776643221 11 23456789999999999999999998877766553
No 373
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.44 E-value=0.011 Score=36.08 Aligned_cols=33 Identities=21% Similarity=0.521 Sum_probs=29.0
Q ss_pred ccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCce
Q 016974 68 GKVYSLDWTSERNRIVSASQDGRLIVWNALTSQK 101 (379)
Q Consensus 68 ~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~ 101 (379)
..|.+++|+|..++||.|+.||.|.++.+ +++.
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 35899999999999999999999999997 4543
No 374
>PHA02713 hypothetical protein; Provisional
Probab=96.43 E-value=0.59 Score=45.56 Aligned_cols=65 Identities=5% Similarity=0.017 Sum_probs=35.6
Q ss_pred CCCEEEEeeCC------CeEEEEECCC-CceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecC--cEEEEeCCCce
Q 016974 261 DGNRFGTGSDD------GTCRLFDIRT-GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG--DCYVWDTLLAK 330 (379)
Q Consensus 261 ~g~~l~s~s~D------~~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg--~i~iwd~~~~~ 330 (379)
+|...+.|+.+ ..+..||+.+ .+-... ... .........+. -+|+..+.|+.+| .+..||..+.+
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~--~~m-~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELI--TTT-ESRLSALHTIL--HDNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEc--ccc-CcccccceeEE--ECCEEEEEeeecceeehhhcCccccc
Confidence 56777777754 2467888876 331111 000 00111122222 3778888888888 67778866554
No 375
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.43 E-value=0.39 Score=41.54 Aligned_cols=153 Identities=17% Similarity=0.178 Sum_probs=84.0
Q ss_pred CeEEEEEeCCCCcEEEEec--CCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEE-CCCCce
Q 016974 208 DVLSVSISGSNSRMFVSGS--CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD-IRTGHQ 284 (379)
Q Consensus 208 ~v~~~~~~~~~~~~l~sg~--~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd-~~~~~~ 284 (379)
.+.+.++++....+.+... ....+.++... ......+.+ ..+..-.|++++...+....+...+++. ...+..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 4566677765554544442 33345555433 222222233 3677889999987777766666667763 333332
Q ss_pred eEEEeeccCCCCCCCeEEEEEccCCCEEEEEE---ecCcEEEEeCC---Cc--eEEEecccccCCccCceeEEEECCCCC
Q 016974 285 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGY---SNGDCYVWDTL---LA--KVVLNLGSLQNSHEGRITCLGLSADGS 356 (379)
Q Consensus 285 ~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~---~dg~i~iwd~~---~~--~~~~~~~~~~~~h~~~v~~~~~s~d~~ 356 (379)
.......... ...|..+.+||||..+|.-. .++.|++=-+. .+ ................+..++|.+++.
T Consensus 101 ~~~~v~~~~~--~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 101 EPVEVDWPGL--RGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST 178 (253)
T ss_pred eeEEeccccc--CCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE
Confidence 2211111111 11699999999999887765 34566665321 12 111111011112345789999999999
Q ss_pred eEEEeeCCCc
Q 016974 357 ALCTGSWDTN 366 (379)
Q Consensus 357 ~l~s~s~D~~ 366 (379)
+++.+...+.
T Consensus 179 L~V~~~~~~~ 188 (253)
T PF10647_consen 179 LVVLGRSAGG 188 (253)
T ss_pred EEEEeCCCCC
Confidence 8887655443
No 376
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.35 E-value=0.016 Score=57.85 Aligned_cols=101 Identities=22% Similarity=0.329 Sum_probs=68.8
Q ss_pred EEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCe
Q 016974 221 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV 300 (379)
Q Consensus 221 ~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v 300 (379)
.++.|+..|.+-..|....-.+...-..-.++|.+++|+.+|..++.|-.+|.|.+||+..++.++.+.. ++..+.+ |
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e-~~ap~t~-v 178 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITE-HGAPVTG-V 178 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeee-cCCccce-E
Confidence 4666777777877776542222111122356899999999999999999999999999999888776643 3333333 3
Q ss_pred EEEEEccCCCEEEEEEecCcEEEEe
Q 016974 301 TSIAFSISGRLLFAGYSNGDCYVWD 325 (379)
Q Consensus 301 ~~~~fs~~g~~l~sg~~dg~i~iwd 325 (379)
..+.+..++..+.+++..|. +|.
T Consensus 179 i~v~~t~~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 179 IFVGRTSQNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred EEEEEeCCCcEEEEccCCCc--eEE
Confidence 33444445557888877776 554
No 377
>PHA02713 hypothetical protein; Provisional
Probab=96.34 E-value=0.22 Score=48.48 Aligned_cols=64 Identities=11% Similarity=0.119 Sum_probs=35.5
Q ss_pred CCcEEEEecCCC------cEEEEEccC-Cc-cceEEEecccCCeeEEEEccCCCEEEEeeCCC--eEEEEECCCCc
Q 016974 218 NSRMFVSGSCDS------TARLWDTRV-AS-RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG--TCRLFDIRTGH 283 (379)
Q Consensus 218 ~~~~l~sg~~d~------~i~vwd~~~-~~-~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~--~i~iwd~~~~~ 283 (379)
++++++.|+.++ .+..||... .. ..+..+.........+.+ +|...+.|+.|+ ++..||+.+.+
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence 456777777642 356788764 21 111122211122222332 788889999888 67777776643
No 378
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.18 E-value=1.4 Score=43.02 Aligned_cols=228 Identities=13% Similarity=0.150 Sum_probs=106.7
Q ss_pred CCCeEEEEcCC------CcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCC-C-----cEEEEEcCCCCCCC
Q 016974 78 ERNRIVSASQD------GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD-S-----VCSIFNLNSPTDKD 145 (379)
Q Consensus 78 ~~~~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d-~-----~i~iw~~~~~~~~~ 145 (379)
.+.+++.|+.+ .++..+|..+++-......+........-.-+|...++||.| + .+..||....
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~---- 359 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTN---- 359 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCC----
Confidence 34566777766 367788877764332222221111111122356788889988 2 3445554421
Q ss_pred CCcceeeeecccccceEEEEEecCCCceEEEeeCCCe-----EEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCc
Q 016974 146 GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT-----CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR 220 (379)
Q Consensus 146 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~-----i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 220 (379)
++.....+........ ++. -++...+.|+.||. +-.||..+....... .............-++.
T Consensus 360 -~W~~~a~M~~~R~~~~-v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va------~m~~~r~~~gv~~~~g~ 429 (571)
T KOG4441|consen 360 -QWTPVAPMNTKRSDFG-VAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA------PMLTRRSGHGVAVLGGK 429 (571)
T ss_pred -ceeccCCccCccccce-eEE--ECCEEEEEeccccccccccEEEecCCCCcccccC------CCCcceeeeEEEEECCE
Confidence 1111111111111111 111 13456788888864 667777665332211 11112222222223678
Q ss_pred EEEEecCCC------cEEEEEccCCcc----ceEEEecccCCeeEEEEccCCCEEEEeeCCC-----eEEEEECCCCcee
Q 016974 221 MFVSGSCDS------TARLWDTRVASR----AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG-----TCRLFDIRTGHQL 285 (379)
Q Consensus 221 ~l~sg~~d~------~i~vwd~~~~~~----~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~-----~i~iwd~~~~~~~ 285 (379)
+++.|+.++ ++..||..+..- +..+-+.+ ..++. -++..++.|+.|+ +|..+|.++.+-.
T Consensus 430 iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~----~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~ 504 (571)
T KOG4441|consen 430 LYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSG----FGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWT 504 (571)
T ss_pred EEEEcCcCCCccccceEEEEcCCCCceeecCCccccccc----ceEEE-ECCEEEEECCccCCCccceEEEEcCCCCcee
Confidence 888888665 345666543210 01111111 11222 3677888888776 3677888765433
Q ss_pred EEEeeccCCCCCCCeEEEEEccCCCEEEEEEecC-----cEEEEeCCCc
Q 016974 286 QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-----DCYVWDTLLA 329 (379)
Q Consensus 286 ~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg-----~i~iwd~~~~ 329 (379)
..- .... ....+-.+ .-+++..+.|+.|| +|..||..+.
T Consensus 505 ~v~--~m~~-~rs~~g~~--~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 505 MVA--PMTS-PRSAVGVV--VLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred Ecc--cCcc-ccccccEE--EECCEEEEEecccCccccceeEEcCCCCC
Confidence 221 1100 00111111 23566677777776 4556665443
No 379
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.76 E-value=1.5 Score=39.73 Aligned_cols=69 Identities=22% Similarity=0.257 Sum_probs=43.7
Q ss_pred eEEEEEcc-------CCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEE
Q 016974 300 VTSIAFSI-------SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLK 368 (379)
Q Consensus 300 v~~~~fs~-------~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~ 368 (379)
++.+.|-. .|.++++....+.|...++.....+.....+......++..+++.|||.+.++.+.+|.|+
T Consensus 255 p~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 255 PTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 45566642 4556666666667877776544333222222244555899999999999999988888874
No 380
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.76 E-value=1.3 Score=43.34 Aligned_cols=196 Identities=12% Similarity=0.097 Sum_probs=92.3
Q ss_pred ccEEEEEeeCCCCeEEEEc------CCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCC-CcEEEEEcCC
Q 016974 68 GKVYSLDWTSERNRIVSAS------QDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD-SVCSIFNLNS 140 (379)
Q Consensus 68 ~~v~~~~~~~~~~~l~s~s------~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d-~~i~iw~~~~ 140 (379)
..+.+.+++|+|+.++..- .|..-.||-...+.....+... .....-.|+|+|+.+.+.... ...++.+-..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g-~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~ 428 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEG-HSLTRPSWSLDADAVWVVVDGNTVVRVIRDPA 428 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecC-CCCCCceECCCCCceEEEecCcceEEEeccCC
Confidence 3577889999999876554 3544455533222222222221 225666899999888777543 2222222111
Q ss_pred CCCCCCCcceee----eec-ccccceEEEEEecCCCceEEEeeCCCeEEE---eecCCCeeEEEecCccccCCccCeEEE
Q 016974 141 PTDKDGNLPVSR----MLS-GHKGYVSCCQYVPDEDTHLITSSGDQTCVL---WDITTGLRTSVFGGEFQSGHTADVLSV 212 (379)
Q Consensus 141 ~~~~~~~~~~~~----~~~-~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~---wd~~~~~~~~~~~~~~~~~h~~~v~~~ 212 (379)
.++..... ... ...+.|..+.|+|++....+.. ++.|.+ -....|.....-.......-...+.++
T Consensus 429 ----~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 429 ----TGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred ----CceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence 01110000 000 2245699999999986544433 466655 232333211100000011222335778
Q ss_pred EEeCCCCcEEEEecCCCcEEEEEccCCccceEEEec--ccCCeeEEEEccCCCEEEEeeCCCeE
Q 016974 213 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--HEGDVNTVKFFPDGNRFGTGSDDGTC 274 (379)
Q Consensus 213 ~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~--h~~~v~~v~~sp~g~~l~s~s~D~~i 274 (379)
.|.. ++.++ .+..++.-.+|.+.........+.+ ....+.+|+-+++ .++....++.+
T Consensus 503 ~W~~-~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~ 562 (591)
T PRK13616 503 DWRT-GDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVL 562 (591)
T ss_pred eEec-CCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceE
Confidence 8886 44444 5555555556655432222111122 2345666666553 34344444433
No 381
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.70 E-value=0.29 Score=43.24 Aligned_cols=114 Identities=18% Similarity=0.158 Sum_probs=58.0
Q ss_pred cccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEe-C
Q 016974 248 GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD-T 326 (379)
Q Consensus 248 ~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd-~ 326 (379)
.-.+.+..+.-++||+++++++.-....-||.-... ..+|.......|..+.|+|++.+.+.+ ..|.|++=+ .
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~-----w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~ 215 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT-----WQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDP 215 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS------EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-T
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc-----ceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCC
Confidence 334678888889999999888776667788854211 122222234569999999998876644 667777765 1
Q ss_pred CCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEE
Q 016974 327 LLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLK 368 (379)
Q Consensus 327 ~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~ 368 (379)
...........-...-.-.+..++|.++++..|+|+. |++.
T Consensus 216 ~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l~ 256 (302)
T PF14870_consen 216 DDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTLL 256 (302)
T ss_dssp TEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-EE
T ss_pred CCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccEE
Confidence 2222111100000111224789999999888776554 4443
No 382
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.20 E-value=2 Score=39.53 Aligned_cols=111 Identities=14% Similarity=0.133 Sum_probs=58.5
Q ss_pred EEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCc----eeEEEeeccCCC---CCCCeEEEEEccCCCEEEEEEe
Q 016974 245 TFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH----QLQVYYQQHGEN---EIPHVTSIAFSISGRLLFAGYS 317 (379)
Q Consensus 245 ~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~----~~~~~~~~~~~~---~~~~v~~~~fs~~g~~l~sg~~ 317 (379)
.+.......+.+++.++| .+++ +.+...++.|..... ....+....... .......++|.|||.+.++-+.
T Consensus 66 vfa~~l~~p~Gi~~~~~G-lyV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~ 143 (367)
T TIGR02604 66 VFAEELSMVTGLAVAVGG-VYVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGN 143 (367)
T ss_pred EeecCCCCccceeEecCC-EEEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEeccc
Confidence 333334456889999998 5554 444444444543211 111222211111 1223678999999986554331
Q ss_pred -------------------cCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEee
Q 016974 318 -------------------NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS 362 (379)
Q Consensus 318 -------------------dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s 362 (379)
.|.|..++...++..... .++ .....++|+|+|+++++-.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a----~G~-rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 144 TLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVA----HGF-QNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCCceeccCCCccCcccccCceEEEEecCCCeEEEEe----cCc-CCCccceECCCCCEEEEcc
Confidence 144666665544432211 233 2346899999999877633
No 383
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=94.74 E-value=2.6 Score=36.78 Aligned_cols=232 Identities=15% Similarity=0.144 Sum_probs=118.1
Q ss_pred CCCCeEEEEcCCCcEEEEECCCC-ceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCccee--e-
Q 016974 77 SERNRIVSASQDGRLIVWNALTS-QKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVS--R- 152 (379)
Q Consensus 77 ~~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~--~- 152 (379)
..++.|+.|..+| +.+++.... ......+. ..|..+..-|+-+.+++-+ |+.+.++++..-.......+.. .
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~--~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKL--SSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeec--ceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 3567899999888 999998322 22222222 2388888888777666654 4999999988633221110000 0
Q ss_pred ----eecccccceEEEE-EecCCCceEEEeeCCCeEEEeecCCCe-----eEEEecCccccCCccCeEEEEEeCCCCcEE
Q 016974 153 ----MLSGHKGYVSCCQ-YVPDEDTHLITSSGDQTCVLWDITTGL-----RTSVFGGEFQSGHTADVLSVSISGSNSRMF 222 (379)
Q Consensus 153 ----~~~~h~~~v~~~~-~~~~~~~~l~s~~~d~~i~~wd~~~~~-----~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 222 (379)
........+...+ -....+...+.....++|.+|...... ....+ .-...+.++.|.+ +.+
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~------~lp~~~~~i~~~~---~~i 151 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI------SLPDPPSSIAFLG---NKI 151 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE------EcCCCcEEEEEeC---CEE
Confidence 0001112233222 112223334445555688888775531 11211 1235677888873 355
Q ss_pred EEecCCCcEEEEEccCCccceEEEe--c----------ccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeE-EEe
Q 016974 223 VSGSCDSTARLWDTRVASRAVRTFH--G----------HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ-VYY 289 (379)
Q Consensus 223 ~sg~~d~~i~vwd~~~~~~~~~~~~--~----------h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~-~~~ 289 (379)
+.|..+ ...+.|+.+. .....+. . ...++..+.. +++.+|++. |..-.+.|. .|+... ...
T Consensus 152 ~v~~~~-~f~~idl~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i 225 (275)
T PF00780_consen 152 CVGTSK-GFYLIDLNTG-SPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKSTI 225 (275)
T ss_pred EEEeCC-ceEEEecCCC-CceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccEE
Confidence 656544 4667787643 2221111 1 1123333343 345555542 333344443 343322 000
Q ss_pred eccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEec
Q 016974 290 QQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL 335 (379)
Q Consensus 290 ~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~ 335 (379)
. ......++++ ...||++-..+ .|.||++.+++.+..+
T Consensus 226 ~-----W~~~p~~~~~--~~pyli~~~~~-~iEV~~~~~~~lvQ~i 263 (275)
T PF00780_consen 226 Q-----WSSAPQSVAY--SSPYLIAFSSN-SIEVRSLETGELVQTI 263 (275)
T ss_pred E-----cCCchhEEEE--ECCEEEEECCC-EEEEEECcCCcEEEEE
Confidence 0 1123455665 34588776654 5999999998877665
No 384
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.43 E-value=2.1 Score=41.89 Aligned_cols=194 Identities=18% Similarity=0.160 Sum_probs=89.4
Q ss_pred EEEEeeCCCCeEEEEcCC------CcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCc-----EEEEEcC
Q 016974 71 YSLDWTSERNRIVSASQD------GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSV-----CSIFNLN 139 (379)
Q Consensus 71 ~~~~~~~~~~~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~-----i~iw~~~ 139 (379)
.+++.. ++...++|+.| .++-.||..+.+-.............-.-.-+|...|.||.|+. +..||..
T Consensus 326 ~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~ 404 (571)
T KOG4441|consen 326 VGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPV 404 (571)
T ss_pred ccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCC
Confidence 344443 45677889988 35677777665522111111000000001225778888998865 4455543
Q ss_pred CCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCC------eEEEeecCCCeeEEEecCccccCCccCeEEEE
Q 016974 140 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ------TCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 213 (379)
Q Consensus 140 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~------~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~ 213 (379)
.. ++..... ............-++...+.|+.++ ++..||..++......+......+. .++
T Consensus 405 ~~-----~W~~va~---m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~----g~a 472 (571)
T KOG4441|consen 405 TN-----KWTPVAP---MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGF----GVA 472 (571)
T ss_pred CC-----cccccCC---CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccc----eEE
Confidence 21 1111111 1111111111112345667777554 5677888776443322211111111 122
Q ss_pred EeCCCCcEEEEecCCCc-----EEEEEccCCccc-eEEEecccCCeeEEEEccCCCEEEEeeCCC-----eEEEEECCC
Q 016974 214 ISGSNSRMFVSGSCDST-----ARLWDTRVASRA-VRTFHGHEGDVNTVKFFPDGNRFGTGSDDG-----TCRLFDIRT 281 (379)
Q Consensus 214 ~~~~~~~~l~sg~~d~~-----i~vwd~~~~~~~-~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~-----~i~iwd~~~ 281 (379)
. -++.+++.|+.|+. |..+|.....-. +..+......+..+. -++...+.|+.|+ +|..||..+
T Consensus 473 ~--~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 473 V--LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred E--ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEE--ECCEEEEEecccCccccceeEEcCCCC
Confidence 2 25678888888763 566776543111 111111112222222 2567778888776 455555544
No 385
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.38 E-value=0.28 Score=41.35 Aligned_cols=70 Identities=30% Similarity=0.316 Sum_probs=52.3
Q ss_pred EEccCCCEEEEEEecCcEEEEeCCCceEEEeccc---ccC-------CccCceeEEEECCCCCeEEEeeCCCcEEEEecC
Q 016974 304 AFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS---LQN-------SHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 373 (379)
Q Consensus 304 ~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~---~~~-------~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~ 373 (379)
.+..++++|++-+.+|.+++||+.+.+.+..... ... .....|..+.++.+|.-|++-+ +|..+.|+.+
T Consensus 17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 3556889999999999999999988876543211 111 3556889999999999888765 4778888755
Q ss_pred c
Q 016974 374 G 374 (379)
Q Consensus 374 ~ 374 (379)
-
T Consensus 96 L 96 (219)
T PF07569_consen 96 L 96 (219)
T ss_pred c
Confidence 3
No 386
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=94.29 E-value=3.7 Score=36.58 Aligned_cols=223 Identities=14% Similarity=0.141 Sum_probs=115.2
Q ss_pred EeeCCCC-eEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceee
Q 016974 74 DWTSERN-RIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSR 152 (379)
Q Consensus 74 ~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~ 152 (379)
.|.++.+ ++.+--..+.|.-|+..+++. ..+..+......+.+...|.++++.- -+.+++.+..... .....
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d~~g~Lv~~~~---g~~~~~~~~~~~~---t~~~~ 103 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSPGGFSSGALIDAGGRLIACEH---GVRLLDPDTGGKI---TLLAE 103 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECCCCcccceeecCCCeEEEEcc---ccEEEeccCCcee---EEecc
Confidence 4666666 455666777888888775542 23333333333344555555555432 2344544321100 01111
Q ss_pred eecccc-cceEEEEEecCCCceEEEee-----C-----CCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcE
Q 016974 153 MLSGHK-GYVSCCQYVPDEDTHLITSS-----G-----DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRM 221 (379)
Q Consensus 153 ~~~~h~-~~v~~~~~~~~~~~~l~s~~-----~-----d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 221 (379)
...+.. .....+...|++.-++-+.+ . -|.+...|. .+...... ..+-..-+.++|+|.+..+
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~-----~~~~~~~NGla~SpDg~tl 177 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLL-----DDDLTIPNGLAFSPDGKTL 177 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEee-----cCcEEecCceEECCCCCEE
Confidence 111111 12234455555432222222 0 122333332 23333322 2233345789999877677
Q ss_pred EEEecCCCcEEEEEccC-----Ccc-ceEEEecccCCeeEEEEccCCCEEEEeeCCC-eEEEEECCCCceeEEEeeccCC
Q 016974 222 FVSGSCDSTARLWDTRV-----ASR-AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG-TCRLFDIRTGHQLQVYYQQHGE 294 (379)
Q Consensus 222 l~sg~~d~~i~vwd~~~-----~~~-~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~-~i~iwd~~~~~~~~~~~~~~~~ 294 (379)
+++-+..+.|.-|++.. ..+ ....+..+.+..-.++...+|.+.+++-.+| .|.+|+.. ++.+..+..+.
T Consensus 178 y~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~-- 254 (307)
T COG3386 178 YVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV-- 254 (307)
T ss_pred EEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC--
Confidence 77778788888887752 111 1122223456677788888898886555554 89999987 88877765432
Q ss_pred CCCCCeEEEEEc-cCCCEEEEE
Q 016974 295 NEIPHVTSIAFS-ISGRLLFAG 315 (379)
Q Consensus 295 ~~~~~v~~~~fs-~~g~~l~sg 315 (379)
..+++++|- |+.+.|++.
T Consensus 255 ---~~~t~~~FgG~~~~~L~iT 273 (307)
T COG3386 255 ---KRPTNPAFGGPDLNTLYIT 273 (307)
T ss_pred ---CCCccceEeCCCcCEEEEE
Confidence 246777774 334444433
No 387
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=94.25 E-value=3.9 Score=36.63 Aligned_cols=210 Identities=12% Similarity=0.127 Sum_probs=106.4
Q ss_pred EEeeCCCCeEEEE--cCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcce
Q 016974 73 LDWTSERNRIVSA--SQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPV 150 (379)
Q Consensus 73 ~~~~~~~~~l~s~--s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~ 150 (379)
.+++.|+++++.. +--..|-|-|+..++.+..+..+..+.. .-.. .+-+.+-+.||.+.-..++...... ...
T Consensus 100 ~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~i-yP~~--~~~F~~lC~DGsl~~v~Ld~~Gk~~--~~~ 174 (342)
T PF06433_consen 100 FALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLI-YPSG--NRGFSMLCGDGSLLTVTLDADGKEA--QKS 174 (342)
T ss_dssp EEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEE-EEEE--TTEEEEEETTSCEEEEEETSTSSEE--EEE
T ss_pred eEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEE-EecC--CCceEEEecCCceEEEEECCCCCEe--Eee
Confidence 4556677665543 4445677777777777766666543211 1111 2456777788988888887533221 111
Q ss_pred eeeecccccceE-EEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCcccc-----C--CccCeEEEEEeCCCCcEE
Q 016974 151 SRMLSGHKGYVS-CCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS-----G--HTADVLSVSISGSNSRMF 222 (379)
Q Consensus 151 ~~~~~~h~~~v~-~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~-----~--h~~~v~~~~~~~~~~~~l 222 (379)
...+..-.+++. .-++...+ ..++--+.+|.|.--|+............... . -.+.-.-+++++..++++
T Consensus 175 t~~F~~~~dp~f~~~~~~~~~-~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rly 253 (342)
T PF06433_consen 175 TKVFDPDDDPLFEHPAYSRDG-GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLY 253 (342)
T ss_dssp EEESSTTTS-B-S--EEETTT-TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEE
T ss_pred ccccCCCCcccccccceECCC-CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEE
Confidence 112222222222 12233322 34555678888887777654321111111000 0 011223456666555555
Q ss_pred EEe-------cCCCc--EEEEEccCCccceEEEecccCCeeEEEEccCCC-EEEEe-eCCCeEEEEECCCCceeEEEee
Q 016974 223 VSG-------SCDST--ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN-RFGTG-SDDGTCRLFDIRTGHQLQVYYQ 290 (379)
Q Consensus 223 ~sg-------~~d~~--i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~-~l~s~-s~D~~i~iwd~~~~~~~~~~~~ 290 (379)
+.- ..|+. |-++|+.+.+ .+..+.. ..++.+|+.+.+.+ +|.+. ..++.+.+||..+|+.+....+
T Consensus 254 vLMh~g~~gsHKdpgteVWv~D~~t~k-rv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 254 VLMHQGGEGSHKDPGTEVWVYDLKTHK-RVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEE--TT-TTS-EEEEEEEETTTTE-EEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred EEecCCCCCCccCCceEEEEEECCCCe-EEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 442 22333 5555776553 3444432 24588999998766 45444 4588999999999988776543
No 388
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.19 E-value=2.4 Score=40.41 Aligned_cols=118 Identities=12% Similarity=0.097 Sum_probs=70.1
Q ss_pred CCeeEEEEccC----CCEEEEeeCCCeEEEEECCC-----CceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcE
Q 016974 251 GDVNTVKFFPD----GNRFGTGSDDGTCRLFDIRT-----GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDC 321 (379)
Q Consensus 251 ~~v~~v~~sp~----g~~l~s~s~D~~i~iwd~~~-----~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i 321 (379)
..|..+.|.|- ...|.+.-....|.+|.+.. ++.+.....+.++.-.---..+.|+|....|+.-.....=
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 35899999985 22455566778899998752 2222221111111110012467899999888877666544
Q ss_pred EEEeCCC--ceEEEecccccCCccCceeEEEECCCCCeEEEeeCC-CcEEEEecC
Q 016974 322 YVWDTLL--AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD-TNLKIWAFG 373 (379)
Q Consensus 322 ~iwd~~~--~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D-~~i~vw~~~ 373 (379)
.++++.. .+....+ .-.+.|-|.+|.+||+.|+.+-.. =.-+|||-.
T Consensus 137 V~~sV~~d~srVkaDi-----~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADI-----KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EeeeeeeCCceEEEec-----cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 5555432 2332333 235789999999999988865443 235677643
No 389
>PHA03098 kelch-like protein; Provisional
Probab=94.03 E-value=5 Score=38.99 Aligned_cols=60 Identities=7% Similarity=0.008 Sum_probs=29.8
Q ss_pred CCCeEEEEcCCC------cEEEEECCCCceeeEeecC--CcceEEEEECCCCCEEEEeeCCC-----cEEEEEcC
Q 016974 78 ERNRIVSASQDG------RLIVWNALTSQKTHAIKLP--CAWVMTCAFSPTGQSVACGGLDS-----VCSIFNLN 139 (379)
Q Consensus 78 ~~~~l~s~s~D~------~v~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~g~~l~~~~~d~-----~i~iw~~~ 139 (379)
++..++.|+.++ .+..||..+.+-...-..+ ......+ .-+++..+.||.++ .+..||..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~ 366 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPG 366 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCC
Confidence 455666776543 5677787665432211111 1111112 23567777777652 35556654
No 390
>PHA03098 kelch-like protein; Provisional
Probab=93.93 E-value=5.3 Score=38.86 Aligned_cols=186 Identities=13% Similarity=0.066 Sum_probs=83.0
Q ss_pred CceEEEeeCCC------eEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCC-----cEEEEEccCC
Q 016974 171 DTHLITSSGDQ------TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS-----TARLWDTRVA 239 (379)
Q Consensus 171 ~~~l~s~~~d~------~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~-----~i~vwd~~~~ 239 (379)
+..++.|+.++ .+..||..+......-... . .... .++... ++.+++.|+.++ .+..||....
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~--~-~R~~-~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~ 368 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELI--Y-PRKN-PGVTVF--NNRIYVIGGIYNSISLNTVESWKPGES 368 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCC--c-cccc-ceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCC
Confidence 34566666542 4667887765442221100 0 0111 112222 456777787653 4666776532
Q ss_pred ccceEEEec--ccCCeeEEEEccCCCEEEEeeCC------CeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCE
Q 016974 240 SRAVRTFHG--HEGDVNTVKFFPDGNRFGTGSDD------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL 311 (379)
Q Consensus 240 ~~~~~~~~~--h~~~v~~v~~sp~g~~l~s~s~D------~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~ 311 (379)
. -..... +...-.+++ .-+++.++.||.+ ..+..||+.+.+-... ...... ... ..+...++++
T Consensus 369 ~--W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~--~~~p~~-r~~--~~~~~~~~~i 440 (534)
T PHA03098 369 K--WREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG--SPLPIS-HYG--GCAIYHDGKI 440 (534)
T ss_pred c--eeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeec--CCCCcc-ccC--ceEEEECCEE
Confidence 1 111100 000111222 2366777777732 3578888876432111 000000 001 1122345666
Q ss_pred EEEEEecC--------cEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCC-----CcEEEEecCc
Q 016974 312 LFAGYSNG--------DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD-----TNLKIWAFGG 374 (379)
Q Consensus 312 l~sg~~dg--------~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D-----~~i~vw~~~~ 374 (379)
.+.|+.++ .+.+||..+.+-.. +........ ....+. .+++.++.|+.+ +.|.+|+...
T Consensus 441 yv~GG~~~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~r~-~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 441 YVIGGISYIDNIKVYNIVESYNPVTNKWTE-LSSLNFPRI-NASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred EEECCccCCCCCcccceEEEecCCCCceee-CCCCCcccc-cceEEE--ECCEEEEEcCCcCCcccceeEEEeCCC
Confidence 66665422 38888876654322 111111111 111122 267777777765 3566666554
No 391
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.76 E-value=2.3 Score=39.15 Aligned_cols=106 Identities=13% Similarity=0.177 Sum_probs=63.0
Q ss_pred cccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCC
Q 016974 248 GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327 (379)
Q Consensus 248 ~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~ 327 (379)
...++|.++.||+|.+.||.-=.|.+|.+++....+........+. .....|....|+.+. -+|.-... .+.+|.+.
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck-~k~~~IlGF~W~~s~-e~A~i~~~-G~e~y~v~ 140 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECK-TKNANILGFCWTSST-EIAFITDQ-GIEFYQVL 140 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhc-cCcceeEEEEEecCe-eEEEEecC-CeEEEEEc
Confidence 4567999999999999999999999999999743322211111111 112347778887663 34433333 36666543
Q ss_pred CceEEEecccccCCccCceeEEEECCCCCeEE
Q 016974 328 LAKVVLNLGSLQNSHEGRITCLGLSADGSALC 359 (379)
Q Consensus 328 ~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~ 359 (379)
..+.... ....|+-.|.-.+|-++...+.
T Consensus 141 pekrslR---lVks~~~nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 141 PEKRSLR---LVKSHNLNVNWYMYCPETAVIL 169 (657)
T ss_pred hhhhhhh---hhhhcccCccEEEEccccceEe
Confidence 2221111 1134666777777777766543
No 392
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.69 E-value=1.7 Score=40.69 Aligned_cols=93 Identities=11% Similarity=0.076 Sum_probs=51.3
Q ss_pred CeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceE
Q 016974 252 DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV 331 (379)
Q Consensus 252 ~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~ 331 (379)
.|..|..++.|..++-++.+|.+.++=.+....-..+.. ....|+|-.|+-+.+++.+. -
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eD-----gk~~v~CRt~~i~~~~ftss---~------------ 164 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFED-----GKSTVNCRTTPVAERFFTSS---T------------ 164 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecC-----CCceEEEEeecccceeeccC---C------------
Confidence 477888899999999888888765543222111111111 11235555554433322111 0
Q ss_pred EEecccccCCccCceeEEEECCCC---CeEEEeeCCCcEEEEecCce
Q 016974 332 VLNLGSLQNSHEGRITCLGLSADG---SALCTGSWDTNLKIWAFGGY 375 (379)
Q Consensus 332 ~~~~~~~~~~h~~~v~~~~~s~d~---~~l~s~s~D~~i~vw~~~~~ 375 (379)
.-.+..++|+|+. ..|..-+.|++||||+....
T Consensus 165 -----------~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 165 -----------SLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEP 200 (741)
T ss_pred -----------ceeeeeccccCCccCCceEEEEecCcEEEEEecCCc
Confidence 0123445566653 56666777888888887663
No 393
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.56 E-value=7.6 Score=37.65 Aligned_cols=62 Identities=15% Similarity=0.142 Sum_probs=38.7
Q ss_pred CCeEEEEcCCCcEEEEECCCCceeeEeecCCc-ceE---EEEEC-----CCCCEEEEeeCCCcEEEEEcCC
Q 016974 79 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCA-WVM---TCAFS-----PTGQSVACGGLDSVCSIFNLNS 140 (379)
Q Consensus 79 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~-~v~---~~~~s-----~~g~~l~~~~~d~~i~iw~~~~ 140 (379)
+..|+.++.++.|+-.|..+|+.+.++..... .+. ++.+. -.+..++.++.|+.+.-.|..+
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~T 139 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKT 139 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCC
Confidence 45777888899999999999998877653211 111 11010 1234566677777776666554
No 394
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.54 E-value=2.9 Score=37.82 Aligned_cols=110 Identities=17% Similarity=0.250 Sum_probs=57.8
Q ss_pred CeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEee--ccCCCCCCCeEEEEEccC---CCEEEEEEe-c-------
Q 016974 252 DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ--QHGENEIPHVTSIAFSIS---GRLLFAGYS-N------- 318 (379)
Q Consensus 252 ~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~--~~~~~~~~~v~~~~fs~~---g~~l~sg~~-d------- 318 (379)
..++|+|.|||+++++ -..|.|++++ ..+.....+.. ............++|+|+ ..+|..... .
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999987775 5599999999 44443111111 111112335789999995 334444433 1
Q ss_pred -CcEEEEeCCCc-------eEEE-eccc-ccCCccCceeEEEECCCCCeEEEeeCCC
Q 016974 319 -GDCYVWDTLLA-------KVVL-NLGS-LQNSHEGRITCLGLSADGSALCTGSWDT 365 (379)
Q Consensus 319 -g~i~iwd~~~~-------~~~~-~~~~-~~~~h~~~v~~~~~s~d~~~l~s~s~D~ 365 (379)
..|.-|..... +.+. .+.. ....|.+ ..|+|.|||.+.++.+..+
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g--~~l~fgpDG~LYvs~G~~~ 135 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNG--GGLAFGPDGKLYVSVGDGG 135 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-E--EEEEE-TTSEEEEEEB-TT
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCC--ccccCCCCCcEEEEeCCCC
Confidence 24554543222 1111 1111 1134543 5689999998777765544
No 395
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.52 E-value=4 Score=34.29 Aligned_cols=96 Identities=17% Similarity=0.205 Sum_probs=61.5
Q ss_pred eeEEEEccCCCEE-EEeeCCCeEEEEE--CCCCce-----eEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEE
Q 016974 253 VNTVKFFPDGNRF-GTGSDDGTCRLFD--IRTGHQ-----LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVW 324 (379)
Q Consensus 253 v~~v~~sp~g~~l-~s~s~D~~i~iwd--~~~~~~-----~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iw 324 (379)
-+.++|+.+.+.+ +.-+.+-+|.-|| ..+|.. +..+.......+ ...-.++++.+|++.++....|+|.-.
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~-~~PDGm~ID~eG~L~Va~~ng~~V~~~ 238 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFES-LEPDGMTIDTEGNLYVATFNGGTVQKV 238 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCC-CCCCcceEccCCcEEEEEecCcEEEEE
Confidence 3567887766654 4446677787777 555532 111111111001 112345557789888888888999999
Q ss_pred eCCCceEEEecccccCCccCceeEEEECC
Q 016974 325 DTLLAKVVLNLGSLQNSHEGRITCLGLSA 353 (379)
Q Consensus 325 d~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 353 (379)
|..+++...++. -....|+|++|--
T Consensus 239 dp~tGK~L~eik----lPt~qitsccFgG 263 (310)
T KOG4499|consen 239 DPTTGKILLEIK----LPTPQITSCCFGG 263 (310)
T ss_pred CCCCCcEEEEEE----cCCCceEEEEecC
Confidence 999999888773 3467899999963
No 396
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.44 E-value=4.8 Score=35.02 Aligned_cols=170 Identities=13% Similarity=0.149 Sum_probs=108.6
Q ss_pred cccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCC-cceEEEEECCCCCEEEEeeCCCcEEEEEcCCC
Q 016974 63 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPC-AWVMTCAFSPTGQSVACGGLDSVCSIFNLNSP 141 (379)
Q Consensus 63 l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~ 141 (379)
+.|-...|.++.|+|+.+.|++......-.||-...|+.+.++.+.. ...-++.+..+|++.++-=.++.+.+..++..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 55656669999999999999999999999999888899888876543 22334667777888888777888888887754
Q ss_pred CCCCC----Ccceeeeeccc-ccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCC-------ccCe
Q 016974 142 TDKDG----NLPVSRMLSGH-KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGH-------TADV 209 (379)
Q Consensus 142 ~~~~~----~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h-------~~~v 209 (379)
..... +.+.-. ..+ +...-.++|.|.+. .|..+-.-+-+.|+........ +.......+ -..+
T Consensus 161 t~~~~~~~~~i~L~~--~~k~N~GfEGlA~d~~~~-~l~~aKEr~P~~I~~~~~~~~~--l~~~~~~~~~~~~~~f~~Dv 235 (316)
T COG3204 161 TTVISAKVQKIPLGT--TNKKNKGFEGLAWDPVDH-RLFVAKERNPIGIFEVTQSPSS--LSVHASLDPTADRDLFVLDV 235 (316)
T ss_pred ccEEeccceEEeccc--cCCCCcCceeeecCCCCc-eEEEEEccCCcEEEEEecCCcc--cccccccCcccccceEeecc
Confidence 31100 111111 112 22345688988764 4555556666666655422111 000000111 2346
Q ss_pred EEEEEeCCCCcEEEEecCCCcEEEEEcc
Q 016974 210 LSVSISGSNSRMFVSGSCDSTARLWDTR 237 (379)
Q Consensus 210 ~~~~~~~~~~~~l~sg~~d~~i~vwd~~ 237 (379)
.++.+++..+.+++-+..++.+.-.|..
T Consensus 236 Sgl~~~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 236 SGLEFNAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred ccceecCCCCcEEEEecCCceEEEEecC
Confidence 6777888788888888888888777765
No 397
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.39 E-value=2.5 Score=42.35 Aligned_cols=77 Identities=18% Similarity=0.198 Sum_probs=52.4
Q ss_pred CCeEEEEEccCCCEEEEEEecCcEEE-----EeC----CCceEEEe-----cc--cccCCccCceeEEEECCC---CCeE
Q 016974 298 PHVTSIAFSISGRLLFAGYSNGDCYV-----WDT----LLAKVVLN-----LG--SLQNSHEGRITCLGLSAD---GSAL 358 (379)
Q Consensus 298 ~~v~~~~fs~~g~~l~sg~~dg~i~i-----wd~----~~~~~~~~-----~~--~~~~~h~~~v~~~~~s~d---~~~l 358 (379)
..|..+.+||+|.+|+..+..|-..+ |-. ..++.... ++ .+...+...|..+.|+|. +..|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 35889999999999998888774333 210 11111111 11 122345568999999986 5889
Q ss_pred EEeeCCCcEEEEecCc
Q 016974 359 CTGSWDTNLKIWAFGG 374 (379)
Q Consensus 359 ~s~s~D~~i~vw~~~~ 374 (379)
+.=..|+++|+|++..
T Consensus 165 ~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISD 180 (717)
T ss_pred EEEecCCEEEEEecCC
Confidence 9999999999999865
No 398
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.36 E-value=3.6 Score=39.32 Aligned_cols=121 Identities=12% Similarity=0.107 Sum_probs=64.2
Q ss_pred ccceEEEEEecCC---CceEEEeeCCCeEEEeecCCC-----eeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCC
Q 016974 158 KGYVSCCQYVPDE---DTHLITSSGDQTCVLWDITTG-----LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS 229 (379)
Q Consensus 158 ~~~v~~~~~~~~~---~~~l~s~~~d~~i~~wd~~~~-----~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~ 229 (379)
-..|..+.|.|-. ...|+..-..+.|.+|.+... ........+......---..+.|+|...-+.+-...|-
T Consensus 56 FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv 135 (671)
T PF15390_consen 56 FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV 135 (671)
T ss_pred cceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce
Confidence 3458889998742 124666677889999987521 11111111110111111134556765443333344443
Q ss_pred cEEEEEccCCccce-EEEecccCCeeEEEEccCCCEEEEee-CCCeEEEEECC
Q 016974 230 TARLWDTRVASRAV-RTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIR 280 (379)
Q Consensus 230 ~i~vwd~~~~~~~~-~~~~~h~~~v~~v~~sp~g~~l~s~s-~D~~i~iwd~~ 280 (379)
.| +.+++.....+ ..+ .-.+.|+|.+|.+||+.|+.+- ..=.-.+||-.
T Consensus 136 SV-~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 136 SV-LPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred eE-eeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 33 33443222222 223 2357899999999999987663 34456789843
No 399
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.33 E-value=0.35 Score=28.58 Aligned_cols=31 Identities=26% Similarity=0.504 Sum_probs=25.5
Q ss_pred CCeeEEEEccCC---CEEEEeeCCCeEEEEECCC
Q 016974 251 GDVNTVKFFPDG---NRFGTGSDDGTCRLFDIRT 281 (379)
Q Consensus 251 ~~v~~v~~sp~g---~~l~s~s~D~~i~iwd~~~ 281 (379)
++|.++.|+|+. ++|+-+-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999854 4788777788999999985
No 400
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.26 E-value=0.072 Score=52.45 Aligned_cols=122 Identities=20% Similarity=0.206 Sum_probs=60.0
Q ss_pred ecccccceEEEEEecCCCceEEEeeCCCeEEEeecCC--CeeEEEecCccccCCccCeEEEEEeC--CCCcEEEEecCCC
Q 016974 154 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT--GLRTSVFGGEFQSGHTADVLSVSISG--SNSRMFVSGSCDS 229 (379)
Q Consensus 154 ~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~--~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~~l~sg~~d~ 229 (379)
++|..+.|-.+.|...+-..+. -.-|.+.+||+.- |.....+.......-...+.-+.|.| .+..++..+-.++
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~ 205 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG 205 (1283)
T ss_pred HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence 4456666766776443211122 2235678887642 22111111110011111222222222 1334555666677
Q ss_pred cEEEEEccCCccceEEEecccCCeeEEE-----------EccCCCEEEEeeCCCeEEEEEC
Q 016974 230 TARLWDTRVASRAVRTFHGHEGDVNTVK-----------FFPDGNRFGTGSDDGTCRLFDI 279 (379)
Q Consensus 230 ~i~vwd~~~~~~~~~~~~~h~~~v~~v~-----------~sp~g~~l~s~s~D~~i~iwd~ 279 (379)
.|++-.+....+ ..+.+|...+..++ .||||+.+|.++.||.+++|.+
T Consensus 206 ~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 206 EIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred ceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 777766543322 22345665554433 5677777777777777777764
No 401
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=93.26 E-value=7.2 Score=36.76 Aligned_cols=111 Identities=16% Similarity=0.127 Sum_probs=61.3
Q ss_pred cCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEE--EeeccCCCCCCCeEEEEEccCC------CEEEEEEe----
Q 016974 250 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQV--YYQQHGENEIPHVTSIAFSISG------RLLFAGYS---- 317 (379)
Q Consensus 250 ~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~--~~~~~~~~~~~~v~~~~fs~~g------~~l~sg~~---- 317 (379)
-...+.|+|.|||++|++--..|.|++++..++..... +..............++|+|+- .+|.....
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~ 108 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG 108 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence 34568899999998887765569999998655432211 1000001013457899999874 34554431
Q ss_pred ------cCcEEEEeCCC-------ceEEEe-cccccCCccCceeEEEECCCCCeEEEeeC
Q 016974 318 ------NGDCYVWDTLL-------AKVVLN-LGSLQNSHEGRITCLGLSADGSALCTGSW 363 (379)
Q Consensus 318 ------dg~i~iwd~~~-------~~~~~~-~~~~~~~h~~~v~~~~~s~d~~~l~s~s~ 363 (379)
...|.-|.... .+.+.. +.. ...|.+ -.|+|.|||++.++.+.
T Consensus 109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~-~~~H~G--grI~FgPDG~LYVs~GD 165 (454)
T TIGR03606 109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPA-GNDHNG--GRLVFGPDGKIYYTIGE 165 (454)
T ss_pred CCCccCCcEEEEEEecCCCCccccceEEEecCCC-CCCcCC--ceEEECCCCcEEEEECC
Confidence 22455554321 111111 110 123654 45789999987775444
No 402
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=93.24 E-value=11 Score=38.46 Aligned_cols=74 Identities=12% Similarity=-0.005 Sum_probs=49.1
Q ss_pred cccEEEEEeeCCC------CeEEEEcCCCcEEEEECCCCc-eeeEeec----CCcceEEEEECCCCCEEEEeeCCCcEEE
Q 016974 67 AGKVYSLDWTSER------NRIVSASQDGRLIVWNALTSQ-KTHAIKL----PCAWVMTCAFSPTGQSVACGGLDSVCSI 135 (379)
Q Consensus 67 ~~~v~~~~~~~~~------~~l~s~s~D~~v~iwd~~~~~-~~~~~~~----~~~~v~~~~~s~~g~~l~~~~~d~~i~i 135 (379)
...|.|++++|-| +.++.|.++..+.+--..... ....... -...+.-..|-.++.+|.++..||.+..
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~ 609 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY 609 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence 3579999999742 268888888777665433222 2211111 1234556667777899999999999988
Q ss_pred EEcCC
Q 016974 136 FNLNS 140 (379)
Q Consensus 136 w~~~~ 140 (379)
+.++.
T Consensus 610 fv~d~ 614 (1096)
T KOG1897|consen 610 FVLDI 614 (1096)
T ss_pred EEEEc
Confidence 88765
No 403
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.21 E-value=4.4 Score=39.70 Aligned_cols=116 Identities=15% Similarity=0.198 Sum_probs=68.3
Q ss_pred EEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEee-cCCcceEEEEE--CCCCCEEEEeeCCCcEEEEEcCCCCCC--
Q 016974 70 VYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIK-LPCAWVMTCAF--SPTGQSVACGGLDSVCSIFNLNSPTDK-- 144 (379)
Q Consensus 70 v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~~v~~~~~--s~~g~~l~~~~~d~~i~iw~~~~~~~~-- 144 (379)
..-+.-+.-++.-+.-+.-.++.|||...+.....-. ...+.|..+.| .|+|+.+++.|....|.++.-......
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~ 111 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK 111 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence 3334444434333333445579999998877554433 23566888877 578999999999999999864311100
Q ss_pred CCCc-ceee-eecccc-cceEEEEEecCCCceEEEeeCCCeEEEeec
Q 016974 145 DGNL-PVSR-MLSGHK-GYVSCCQYVPDEDTHLITSSGDQTCVLWDI 188 (379)
Q Consensus 145 ~~~~-~~~~-~~~~h~-~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~ 188 (379)
...+ ++.. .+..|+ .+|.+..|.+++ .|+.|+ .+.+.++|-
T Consensus 112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G--~LvV~s-GNqlfv~dk 155 (631)
T PF12234_consen 112 GPSWAPIRKIDISSHTPHPIGDSIWLKDG--TLVVGS-GNQLFVFDK 155 (631)
T ss_pred CcccceeEEEEeecCCCCCccceeEecCC--eEEEEe-CCEEEEECC
Confidence 0011 1111 133444 468888999865 355443 456666653
No 404
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=92.57 E-value=6.6 Score=34.23 Aligned_cols=231 Identities=12% Similarity=0.179 Sum_probs=117.1
Q ss_pred CCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEec
Q 016974 119 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG 198 (379)
Q Consensus 119 ~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 198 (379)
..++.|+.|..+| +.++++..... ..+.. +...|..+...|+-+. |+. -.|+.+.++++..-.......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~------~~~i~--~~~~I~ql~vl~~~~~-llv-Lsd~~l~~~~L~~l~~~~~~~ 73 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSK------PTRIL--KLSSITQLSVLPELNL-LLV-LSDGQLYVYDLDSLEPVSTSA 73 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcc------ceeEe--ecceEEEEEEecccCE-EEE-EcCCccEEEEchhhccccccc
Confidence 4578899998888 88888832111 11111 2233888888886543 332 346999999986532221000
Q ss_pred -C--------ccccCCccCeEEEE-EeCCCCcEEEEecCCCcEEEEEccCCc----cceEEEecccCCeeEEEEccCCCE
Q 016974 199 -G--------EFQSGHTADVLSVS-ISGSNSRMFVSGSCDSTARLWDTRVAS----RAVRTFHGHEGDVNTVKFFPDGNR 264 (379)
Q Consensus 199 -~--------~~~~~h~~~v~~~~-~~~~~~~~l~sg~~d~~i~vwd~~~~~----~~~~~~~~h~~~v~~v~~sp~g~~ 264 (379)
. .........+...+ .....+...+.....+.|.+|...... ...+.+. -...+.+++|. ++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~ 150 (275)
T PF00780_consen 74 PLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNK 150 (275)
T ss_pred cccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCE
Confidence 0 00012223344443 112223333344455589988876531 2334443 34678899998 556
Q ss_pred EEEeeCCCeEEEEECCCCceeEEEeeccC-------CCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEeccc
Q 016974 265 FGTGSDDGTCRLFDIRTGHQLQVYYQQHG-------ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS 337 (379)
Q Consensus 265 l~s~s~D~~i~iwd~~~~~~~~~~~~~~~-------~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 337 (379)
++.|..+ ...+.|+.++.....+..... .....++..+..+ ++.+|++- |..-.+-|. .|+.... ..
T Consensus 151 i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~-~~ 224 (275)
T PF00780_consen 151 ICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRK-ST 224 (275)
T ss_pred EEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCcc-cE
Confidence 7777654 478889987665433311110 0112234444443 45666643 222222332 2322210 00
Q ss_pred ccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 338 LQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 338 ~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
. . .......+++. ..+|+..+. +.|-||++..
T Consensus 225 i-~-W~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~ 256 (275)
T PF00780_consen 225 I-Q-WSSAPQSVAYS--SPYLIAFSS-NSIEVRSLET 256 (275)
T ss_pred E-E-cCCchhEEEEE--CCEEEEECC-CEEEEEECcC
Confidence 0 1 12234455553 347776555 5599999876
No 405
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=92.48 E-value=9.2 Score=35.67 Aligned_cols=149 Identities=11% Similarity=0.171 Sum_probs=80.3
Q ss_pred CCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEE---EecCCCceEEEeeCCCeEEEeecCCC------
Q 016974 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQ---YVPDEDTHLITSSGDQTCVLWDITTG------ 191 (379)
Q Consensus 121 g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~---~~~~~~~~l~s~~~d~~i~~wd~~~~------ 191 (379)
...|+.||.+|.++||+............... .-..+|..+. |.+......++--..+.+.+|.+...
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~---~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLET---QLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEE---ecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCccc
Confidence 46899999999999999754321111111111 1223454443 33333333444466777777776211
Q ss_pred ---eeEEEecCccccCCc--cCeEEEEE---eCCC-CcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCC
Q 016974 192 ---LRTSVFGGEFQSGHT--ADVLSVSI---SGSN-SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG 262 (379)
Q Consensus 192 ---~~~~~~~~~~~~~h~--~~v~~~~~---~~~~-~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g 262 (379)
..+... ..|. .....+.. .... ..+++.-+.||.+.+++-+.. ....+-..---.-.+.|.|.-
T Consensus 114 g~~~~L~~~-----yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~--~f~~~lp~~llPgPl~Y~~~t 186 (418)
T PF14727_consen 114 GNQYQLELI-----YEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF--AFSRFLPDFLLPGPLCYCPRT 186 (418)
T ss_pred CcEEEEEEE-----EEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE--EEEEEcCCCCCCcCeEEeecC
Confidence 111111 1121 11222222 2222 467888999999999985422 111111111122346888888
Q ss_pred CEEEEeeCCCeEEEEEC
Q 016974 263 NRFGTGSDDGTCRLFDI 279 (379)
Q Consensus 263 ~~l~s~s~D~~i~iwd~ 279 (379)
+.|++++.+..+.-|..
T Consensus 187 Dsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 187 DSFVTASSSWTLECYKY 203 (418)
T ss_pred CEEEEecCceeEEEecH
Confidence 89999999988888864
No 406
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.18 E-value=7.4 Score=33.93 Aligned_cols=166 Identities=14% Similarity=0.167 Sum_probs=94.5
Q ss_pred ccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEE
Q 016974 156 GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWD 235 (379)
Q Consensus 156 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd 235 (379)
|-...+.++.|+|+... |.+......-.+|=-..|..+..++... ....-.+.+.. ++++.++--.++.+.++.
T Consensus 83 g~~~nvS~LTynp~~rt-LFav~n~p~~iVElt~~GdlirtiPL~g----~~DpE~Ieyig-~n~fvi~dER~~~l~~~~ 156 (316)
T COG3204 83 GETANVSSLTYNPDTRT-LFAVTNKPAAIVELTKEGDLIRTIPLTG----FSDPETIEYIG-GNQFVIVDERDRALYLFT 156 (316)
T ss_pred cccccccceeeCCCcce-EEEecCCCceEEEEecCCceEEEecccc----cCChhHeEEec-CCEEEEEehhcceEEEEE
Confidence 44455899999998754 4444444444444334455555444322 12223444543 566777767788888876
Q ss_pred ccCCccce---------EEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCce-eEEEeeccCC----CCCCCeE
Q 016974 236 TRVASRAV---------RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ-LQVYYQQHGE----NEIPHVT 301 (379)
Q Consensus 236 ~~~~~~~~---------~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~-~~~~~~~~~~----~~~~~v~ 301 (379)
+......+ ......+.....++|+|....|..+=+-.-+.||.+..+.. +......... -....|+
T Consensus 157 vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvS 236 (316)
T COG3204 157 VDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVS 236 (316)
T ss_pred EcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccc
Confidence 65332111 11111144577899999888888888777777777653321 1100000000 0122478
Q ss_pred EEEEccC-CCEEEEEEecCcEEEEeCC
Q 016974 302 SIAFSIS-GRLLFAGYSNGDCYVWDTL 327 (379)
Q Consensus 302 ~~~fs~~-g~~l~sg~~dg~i~iwd~~ 327 (379)
++.|++. +.+++-+.+++.+.-.|..
T Consensus 237 gl~~~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 237 GLEFNAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred cceecCCCCcEEEEecCCceEEEEecC
Confidence 8899874 5566667778888888754
No 407
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.07 E-value=2.7 Score=43.15 Aligned_cols=103 Identities=16% Similarity=0.114 Sum_probs=67.2
Q ss_pred eEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEE
Q 016974 209 VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY 288 (379)
Q Consensus 209 v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~ 288 (379)
..++.|+|.-....+.+..|+.|++..+......+..+ .-...+++++|+|.|..++.|-..|++.-|-.. ++....+
T Consensus 158 ~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~i 235 (1405)
T KOG3630|consen 158 QLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEI 235 (1405)
T ss_pred cccccccCCccchhhhhccccchhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecc
Confidence 34566776555566778889999988776443333332 234568999999999999999999999888654 2221111
Q ss_pred eeccCCCCCCCeEEEEEccCCCEEEE
Q 016974 289 YQQHGENEIPHVTSIAFSISGRLLFA 314 (379)
Q Consensus 289 ~~~~~~~~~~~v~~~~fs~~g~~l~s 314 (379)
.... ..+...|.+++|-....++++
T Consensus 236 p~Pp-~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 236 PEPP-VEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred cCCC-cCCCcceeEEEEecceeEEEE
Confidence 1111 112346889988777666655
No 408
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.01 E-value=5.3 Score=37.52 Aligned_cols=145 Identities=15% Similarity=0.162 Sum_probs=79.9
Q ss_pred CCCcEE-EEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCC--------CEEEEeeCCCeEEEEECCC-CceeE
Q 016974 217 SNSRMF-VSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG--------NRFGTGSDDGTCRLFDIRT-GHQLQ 286 (379)
Q Consensus 217 ~~~~~l-~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g--------~~l~s~s~D~~i~iwd~~~-~~~~~ 286 (379)
.+..++ ..|.....+.--|+..+ +.+..+.-|..- -|.|.|+. +.|+--| |..|.-.|.+- |..+.
T Consensus 477 ~dssli~~dg~~~~kLykmDIErG-kvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~gNKi~ 552 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERG-KVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRARGNKIK 552 (776)
T ss_pred CCcceEEecCCCcccceeeecccc-eeeeEeecCCcc--eeecCCchhHHhcCccceEEeec-ccceEEecccccCCcee
Confidence 344444 34555556666666644 566667666554 47777753 3454444 44555556653 22222
Q ss_pred EEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCc
Q 016974 287 VYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTN 366 (379)
Q Consensus 287 ~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~ 366 (379)
......-. .....++..-. ...|||+|+..|.|++||-..-+....+ .+....|..+..+.+|++|++.+. .+
T Consensus 553 v~esKdY~-tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtal----P~lG~aIk~idvta~Gk~ilaTCk-~y 625 (776)
T COG5167 553 VVESKDYK-TKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTAL----PGLGDAIKHIDVTANGKHILATCK-NY 625 (776)
T ss_pred eeeehhcc-ccccccccccc-cCceEEEecCCCceeeehhhcchhhhcC----cccccceeeeEeecCCcEEEEeec-ce
Confidence 21110000 00112233322 3449999999999999995432222222 455678889999999999886554 45
Q ss_pred EEEEec
Q 016974 367 LKIWAF 372 (379)
Q Consensus 367 i~vw~~ 372 (379)
+.+-++
T Consensus 626 llL~d~ 631 (776)
T COG5167 626 LLLTDV 631 (776)
T ss_pred EEEEec
Confidence 555444
No 409
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.96 E-value=2.4 Score=43.51 Aligned_cols=130 Identities=13% Similarity=0.027 Sum_probs=80.2
Q ss_pred ecCCCcEEEEEccCCccce----EEEe------cccCCeeEEEEccCC-CEEEEeeCCCeEEEEECCCCceeEEEeeccC
Q 016974 225 GSCDSTARLWDTRVASRAV----RTFH------GHEGDVNTVKFFPDG-NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG 293 (379)
Q Consensus 225 g~~d~~i~vwd~~~~~~~~----~~~~------~h~~~v~~v~~sp~g-~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~ 293 (379)
.+.+-.|..||++...... .-+. ....-..++.|+|.- ...+....|+.|++..+.........
T Consensus 120 tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s----- 194 (1405)
T KOG3630|consen 120 TSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTS----- 194 (1405)
T ss_pred ecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcc-----
Confidence 3444578889987432111 1111 112235678888853 34566778999998876543221110
Q ss_pred CCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEE
Q 016974 294 ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCT 360 (379)
Q Consensus 294 ~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s 360 (379)
-.-....++++|+|.|+-++.|...|++.-|.-. ..+...+......-...|.||+|-....||++
T Consensus 195 ~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 195 FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred cCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 0112347899999999999999999999998743 23223333222333568999999877777775
No 410
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.92 E-value=1.1 Score=37.87 Aligned_cols=71 Identities=18% Similarity=0.341 Sum_probs=49.8
Q ss_pred EccCCCEEEEeeCCCeEEEEECCCCceeEEE------eec---cCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCC
Q 016974 258 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY------YQQ---HGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (379)
Q Consensus 258 ~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~------~~~---~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~ 328 (379)
+..++.++++...+|.+++||+.+++.+..- ... ........|..+.++.+|.-|++ -++|..+.|+...
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~-lsng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVT-LSNGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEE-EeCCCEEEecccc
Confidence 4457889999999999999999987653211 000 00023456899999999987665 4568899998654
Q ss_pred c
Q 016974 329 A 329 (379)
Q Consensus 329 ~ 329 (379)
+
T Consensus 97 ~ 97 (219)
T PF07569_consen 97 G 97 (219)
T ss_pred c
Confidence 4
No 411
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=91.82 E-value=2.7 Score=41.07 Aligned_cols=74 Identities=18% Similarity=0.243 Sum_probs=51.1
Q ss_pred eEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEEC--CCCCeEEEeeCCCcEEEEecCcee
Q 016974 300 VTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS--ADGSALCTGSWDTNLKIWAFGGYR 376 (379)
Q Consensus 300 v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s--~d~~~l~s~s~D~~i~vw~~~~~~ 376 (379)
.+-+.-|.-++..++-.+...+.|||...+.....- .+ ...+.|.+++|. |||+.+.+.+....|.++.-..|.
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~-~f--~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEE-SF--SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEee-ee--cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence 344445555665555444558999998776644332 11 346789999994 899999999999999999754443
No 412
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=91.80 E-value=11 Score=35.03 Aligned_cols=102 Identities=21% Similarity=0.248 Sum_probs=49.3
Q ss_pred CCCcEEEEEccCCccceEEEecc-c-CCeeEEEEccC--CCE-EEEeeCCCeEEEEEC-CCCc----eeEEEeeccCCCC
Q 016974 227 CDSTARLWDTRVASRAVRTFHGH-E-GDVNTVKFFPD--GNR-FGTGSDDGTCRLFDI-RTGH----QLQVYYQQHGENE 296 (379)
Q Consensus 227 ~d~~i~vwd~~~~~~~~~~~~~h-~-~~v~~v~~sp~--g~~-l~s~s~D~~i~iwd~-~~~~----~~~~~~~~~~~~~ 296 (379)
....+.+||+... +.++++.-- + .....|.|.++ ..+ ++.+.-..+|..|-- ..++ .+..+-....++.
T Consensus 220 yG~~l~vWD~~~r-~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~ 298 (461)
T PF05694_consen 220 YGHSLHVWDWSTR-KLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGW 298 (461)
T ss_dssp S--EEEEEETTTT-EEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS
T ss_pred ccCeEEEEECCCC-cEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcc
Confidence 4568999999854 566665422 1 24667888654 444 444444555655543 3332 1111111000011
Q ss_pred ------------CCCeEEEEEccCCCEEEEEE-ecCcEEEEeCCCc
Q 016974 297 ------------IPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLA 329 (379)
Q Consensus 297 ------------~~~v~~~~fs~~g~~l~sg~-~dg~i~iwd~~~~ 329 (379)
.+-|+.+.+|.|.++|.... -+|.|+.||+...
T Consensus 299 ~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 299 ILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp ---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred cccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 13478999999999997764 7999999998664
No 413
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.44 E-value=1.1 Score=26.55 Aligned_cols=32 Identities=19% Similarity=0.353 Sum_probs=25.9
Q ss_pred ccEEEEEeeCCC---CeEEEEcCCCcEEEEECCCC
Q 016974 68 GKVYSLDWTSER---NRIVSASQDGRLIVWNALTS 99 (379)
Q Consensus 68 ~~v~~~~~~~~~---~~l~s~s~D~~v~iwd~~~~ 99 (379)
+.|.++.|+|+. ++|+-+-.-|.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468899999854 47888888899999998853
No 414
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=91.42 E-value=9.1 Score=33.41 Aligned_cols=281 Identities=12% Similarity=0.075 Sum_probs=134.6
Q ss_pred cEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCc
Q 016974 69 KVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNL 148 (379)
Q Consensus 69 ~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~ 148 (379)
-+..+.++.+ +...+..+.-++|.|+.+......+..-...-..-.+.-.|++...+..|.-.-+.|+..+..+.
T Consensus 88 l~~Dv~vse~--yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~--- 162 (370)
T COG5276 88 LFADVRVSEE--YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQ--- 162 (370)
T ss_pred hhheeEeccc--EEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCce---
Confidence 3456666544 66677788889999998876654443211111223345568888888878888899998765331
Q ss_pred ceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCC
Q 016974 149 PVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD 228 (379)
Q Consensus 149 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d 228 (379)
+........+.-..++.+. ++-..+..|+-+.+-|+........++ ... ....+.++..++ + +.+++-. +
T Consensus 163 -lagrya~~~~d~~~v~ISG---n~AYvA~~d~GL~ivDVSnp~sPvli~-~~n--~g~g~~sv~vsd-n-r~y~vvy-~ 232 (370)
T COG5276 163 -LAGRYALPGGDTHDVAISG---NYAYVAWRDGGLTIVDVSNPHSPVLIG-SYN--TGPGTYSVSVSD-N-RAYLVVY-D 232 (370)
T ss_pred -eeeeeccCCCCceeEEEec---CeEEEEEeCCCeEEEEccCCCCCeEEE-EEe--cCCceEEEEecC-C-eeEEEEc-c
Confidence 1112222222223344432 345556688999999987654333322 111 122566666664 3 3333332 2
Q ss_pred CcEEEEEccCCccceEEEecccCCeeEE-EEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEcc
Q 016974 229 STARLWDTRVASRAVRTFHGHEGDVNTV-KFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI 307 (379)
Q Consensus 229 ~~i~vwd~~~~~~~~~~~~~h~~~v~~v-~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~ 307 (379)
-.+.+-|......+...-.-.+..+.++ .|.-.+.+...+-.+.-+-+-|+...... +...+-......-..+ ..
T Consensus 233 egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~sp--fl~ss~~t~g~~a~gi--~a 308 (370)
T COG5276 233 EGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSP--FLSSSLDTAGYQAAGI--RA 308 (370)
T ss_pred cceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCC--chhccccCCCccccce--EE
Confidence 3355666654432211101112222222 12223445444444555555555432110 0000000000000111 12
Q ss_pred CCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecC
Q 016974 308 SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 373 (379)
Q Consensus 308 ~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~ 373 (379)
.|.++..+..+ ...+-|....+..... .+....+.+.+.+-+.+.+.+..+++-+.||++.
T Consensus 309 y~~y~yiadkn-~g~vV~~s~~s~m~~~----~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~~ 369 (370)
T COG5276 309 YGNYNYIADKN-TGAVVDASPPSMMDKR----PGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEYL 369 (370)
T ss_pred ecCeeEeccCC-ceEEEeCCChhhcccc----cCcceEeeecceEEEeeEEEEeecCCCEEEEEec
Confidence 23444444333 3333333222211111 1122234444555567788899999999999864
No 415
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=91.27 E-value=1.6 Score=40.50 Aligned_cols=93 Identities=17% Similarity=0.220 Sum_probs=55.0
Q ss_pred EEEEccCCCEEEEeeCCCeEEE---EECC-CC--c-eeE-EEeeccCCCCCCCeEEE---EE--------ccCCCEEEEE
Q 016974 255 TVKFFPDGNRFGTGSDDGTCRL---FDIR-TG--H-QLQ-VYYQQHGENEIPHVTSI---AF--------SISGRLLFAG 315 (379)
Q Consensus 255 ~v~~sp~g~~l~s~s~D~~i~i---wd~~-~~--~-~~~-~~~~~~~~~~~~~v~~~---~f--------s~~g~~l~sg 315 (379)
.++.+|++++||.+..++.+.+ |+.. .+ . ... .+...-.......|+++ .+ .+|...|+.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4677899999999988877665 6431 11 1 111 11111111111345544 44 2456899999
Q ss_pred EecCcEEEEeCCCceEEEecccccCCccCceeEEEEC
Q 016974 316 YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 352 (379)
Q Consensus 316 ~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s 352 (379)
.++|.|++|.. ++..+. .+.-|..+|..+...
T Consensus 86 ~ssG~vrfyte-~G~LL~----~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLL----SQLLHEEPVLKIKCR 117 (415)
T ss_pred ecccEEEEEec-cchHHH----HHhcCccceEEEEec
Confidence 99999999985 333221 124578888888774
No 416
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=90.97 E-value=2.8 Score=41.45 Aligned_cols=112 Identities=10% Similarity=0.057 Sum_probs=68.4
Q ss_pred cCCCEEEEeeCCCeEEEEECCC-------C-ceeEE-Ee-----eccCCCCCCCeEEEEEc--cCCCEEEEEEecCcEEE
Q 016974 260 PDGNRFGTGSDDGTCRLFDIRT-------G-HQLQV-YY-----QQHGENEIPHVTSIAFS--ISGRLLFAGYSNGDCYV 323 (379)
Q Consensus 260 p~g~~l~s~s~D~~i~iwd~~~-------~-~~~~~-~~-----~~~~~~~~~~v~~~~fs--~~g~~l~sg~~dg~i~i 323 (379)
-+...|+.+.+||.|.+|.+++ . ..... .. ......-...++++++. ...++||+++....|.|
T Consensus 112 g~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 112 GGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 3556889999999999997631 0 00000 00 00001112246889988 77889999988888888
Q ss_pred EeCCCceEEEecccccCCccCceeEEEECCCC---C---eEEEeeCCCcEEEEec
Q 016974 324 WDTLLAKVVLNLGSLQNSHEGRITCLGLSADG---S---ALCTGSWDTNLKIWAF 372 (379)
Q Consensus 324 wd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~---~---~l~s~s~D~~i~vw~~ 372 (379)
|-.......... .....|...|-+|+|-++. . .|++++-.|.+-+|++
T Consensus 192 Faf~l~~~r~~~-~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDERFYH-VPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecccccccc-ccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 753321100000 0012355578999996533 2 7889999999999887
No 417
>PHA02790 Kelch-like protein; Provisional
Probab=90.97 E-value=15 Score=35.16 Aligned_cols=184 Identities=12% Similarity=0.066 Sum_probs=82.9
Q ss_pred CceEEEeeCC-----CeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCC--cEEEEEccCCccce
Q 016974 171 DTHLITSSGD-----QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS--TARLWDTRVASRAV 243 (379)
Q Consensus 171 ~~~l~s~~~d-----~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~--~i~vwd~~~~~~~~ 243 (379)
+..++.|+.+ .++..||..++......... ... .. .++.. .++.+++.|+.++ .+..||.... . -
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~--~~r-~~-~~~v~--~~~~iYviGG~~~~~sve~ydp~~n-~-W 343 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMN--SPR-LY-ASGVP--ANNKLYVVGGLPNPTSVERWFHGDA-A-W 343 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCC--chh-hc-ceEEE--ECCEEEEECCcCCCCceEEEECCCC-e-E
Confidence 3455666654 34667887765433221111 011 11 11222 2567788888643 5777775432 1 1
Q ss_pred EEEecccCCe-eEEEEccCCCEEEEeeCCC---eEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecC
Q 016974 244 RTFHGHEGDV-NTVKFFPDGNRFGTGSDDG---TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG 319 (379)
Q Consensus 244 ~~~~~h~~~v-~~v~~sp~g~~l~s~s~D~---~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg 319 (379)
.....-..+. ......-+|+..+.||.++ ++..||.++..-... ..... +.-...+...+|+..+.| |
T Consensus 344 ~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~--~~m~~---~r~~~~~~~~~~~IYv~G---G 415 (480)
T PHA02790 344 VNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFG--PSTYY---PHYKSCALVFGRRLFLVG---R 415 (480)
T ss_pred EECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeC--CCCCC---ccccceEEEECCEEEEEC---C
Confidence 1111000011 1111123677788887653 467788776432110 00000 000111223466666666 4
Q ss_pred cEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCC-----CcEEEEecCc
Q 016974 320 DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD-----TNLKIWAFGG 374 (379)
Q Consensus 320 ~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D-----~~i~vw~~~~ 374 (379)
.+.+||..+.+-.. +..+...+. ... ++ .-+|+..+.|+.+ .+|.+||...
T Consensus 416 ~~e~ydp~~~~W~~-~~~m~~~r~-~~~-~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 416 NAEFYCESSNTWTL-IDDPIYPRD-NPE-LI-IVDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred ceEEecCCCCcEeE-cCCCCCCcc-ccE-EE-EECCEEEEECCcCCCcccceEEEEECCC
Confidence 56788876543221 111111111 111 12 2367888888765 3466666543
No 418
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.89 E-value=19 Score=36.23 Aligned_cols=80 Identities=26% Similarity=0.353 Sum_probs=53.1
Q ss_pred ceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCC-----CCCCcc-eeeee--------cccccceEEEEEecCC--CceE
Q 016974 111 WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTD-----KDGNLP-VSRML--------SGHKGYVSCCQYVPDE--DTHL 174 (379)
Q Consensus 111 ~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~-----~~~~~~-~~~~~--------~~h~~~v~~~~~~~~~--~~~l 174 (379)
.|..+.++|+|.+++..|..+.+ |..+..... ..++.. ..+++ ..+...|..+.|+|.. +..|
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 46778899999999999987654 444432111 111110 11111 1344578899999974 5688
Q ss_pred EEeeCCCeEEEeecCCC
Q 016974 175 ITSSGDQTCVLWDITTG 191 (379)
Q Consensus 175 ~s~~~d~~i~~wd~~~~ 191 (379)
+.=..|+++++||+...
T Consensus 165 ~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEecCCEEEEEecCCC
Confidence 88899999999999653
No 419
>PHA02790 Kelch-like protein; Provisional
Probab=90.06 E-value=18 Score=34.62 Aligned_cols=60 Identities=10% Similarity=0.073 Sum_probs=30.2
Q ss_pred CCCeEEEEcCCC-----cEEEEECCCCceeeE--eecCCcceEEEEECCCCCEEEEeeCCC--cEEEEEcC
Q 016974 78 ERNRIVSASQDG-----RLIVWNALTSQKTHA--IKLPCAWVMTCAFSPTGQSVACGGLDS--VCSIFNLN 139 (379)
Q Consensus 78 ~~~~l~s~s~D~-----~v~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~g~~l~~~~~d~--~i~iw~~~ 139 (379)
++..++.|+.++ ++..||..++.-... +..+......+ .-+|...+.||.++ .+..||..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~ 339 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHG 339 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECC
Confidence 345667777653 466778766542221 11111111111 24677777787643 45666643
No 420
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=89.71 E-value=17 Score=33.86 Aligned_cols=242 Identities=16% Similarity=0.137 Sum_probs=112.5
Q ss_pred eEEEEECCCCCEEEEe-eC----CCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeC-------
Q 016974 112 VMTCAFSPTGQSVACG-GL----DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG------- 179 (379)
Q Consensus 112 v~~~~~s~~g~~l~~~-~~----d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~------- 179 (379)
+....++|+|+++|.+ +. ...++++|+.++. . +...+..- .-..+.|.+++..++.+...
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~-----~-l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~ 197 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGK-----F-LPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSD 197 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTE-----E-EEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-C
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCc-----C-cCCccccc--ccceEEEeCCCCEEEEEEeCccccccc
Confidence 3467899999988764 22 2458999987642 1 11111111 11237899886655555422
Q ss_pred ---CCeEEEeecCCCeeE--EEecCccccCCccC-eEEEEEeCCCCcEEE-EecCC---CcEEEEEccCC---ccceEEE
Q 016974 180 ---DQTCVLWDITTGLRT--SVFGGEFQSGHTAD-VLSVSISGSNSRMFV-SGSCD---STARLWDTRVA---SRAVRTF 246 (379)
Q Consensus 180 ---d~~i~~wd~~~~~~~--~~~~~~~~~~h~~~-v~~~~~~~~~~~~l~-sg~~d---~~i~vwd~~~~---~~~~~~~ 246 (379)
...|..|++.++... .+++. ..... ...+..+. ++++++ ..... ..+.+-|.... ......+
T Consensus 198 ~~~~~~v~~~~~gt~~~~d~lvfe~----~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l 272 (414)
T PF02897_consen 198 SGYPRQVYRHKLGTPQSEDELVFEE----PDEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLL 272 (414)
T ss_dssp CGCCEEEEEEETTS-GGG-EEEEC-----TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEE
T ss_pred CCCCcEEEEEECCCChHhCeeEEee----cCCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEE
Confidence 334788888776432 33322 11222 55666776 445544 33332 34666677642 2233344
Q ss_pred ecccCCeeEEEEccCCCEEEEe---eCCCeEEEEECCCCce--eE-EEeeccCCCCCCCeEEEEEccCCCEEEEE-EecC
Q 016974 247 HGHEGDVNTVKFFPDGNRFGTG---SDDGTCRLFDIRTGHQ--LQ-VYYQQHGENEIPHVTSIAFSISGRLLFAG-YSNG 319 (379)
Q Consensus 247 ~~h~~~v~~v~~sp~g~~l~s~---s~D~~i~iwd~~~~~~--~~-~~~~~~~~~~~~~v~~~~fs~~g~~l~sg-~~dg 319 (379)
......+....-+..+.+++.. ...+.|.-.++..... .. .+.. +. ..+.-..+...+.+|+.. -.++
T Consensus 273 ~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~-~~----~~~~l~~~~~~~~~Lvl~~~~~~ 347 (414)
T PF02897_consen 273 SPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIP-ED----EDVSLEDVSLFKDYLVLSYRENG 347 (414)
T ss_dssp EESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE---S----SSEEEEEEEEETTEEEEEEEETT
T ss_pred eCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcC-CC----CceeEEEEEEECCEEEEEEEECC
Confidence 4334444333333344343333 2235566667766542 11 2221 11 112223344455555554 4555
Q ss_pred --cEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEE-E-eeCC--CcEEEEecCc
Q 016974 320 --DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALC-T-GSWD--TNLKIWAFGG 374 (379)
Q Consensus 320 --~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~-s-~s~D--~~i~vw~~~~ 374 (379)
.|++++...+.....+.. .-.+.|..+...+++..+. + .|.- .+++.|++..
T Consensus 348 ~~~l~v~~~~~~~~~~~~~~---p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t 405 (414)
T PF02897_consen 348 SSRLRVYDLDDGKESREIPL---PEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLAT 405 (414)
T ss_dssp EEEEEEEETT-TEEEEEEES---SSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTT
T ss_pred ccEEEEEECCCCcEEeeecC---CcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence 688999872333333211 1233456565555554333 2 3332 3455555544
No 421
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.16 E-value=14 Score=32.12 Aligned_cols=99 Identities=16% Similarity=0.220 Sum_probs=57.3
Q ss_pred EEEEeeCCCCe-EEEEcCCCc-EEEEECCCCceeeEeecCC--cceEEEEECCCCCEEEEeeCC-----CcEEEEEcCCC
Q 016974 71 YSLDWTSERNR-IVSASQDGR-LIVWNALTSQKTHAIKLPC--AWVMTCAFSPTGQSVACGGLD-----SVCSIFNLNSP 141 (379)
Q Consensus 71 ~~~~~~~~~~~-l~s~s~D~~-v~iwd~~~~~~~~~~~~~~--~~v~~~~~s~~g~~l~~~~~d-----~~i~iw~~~~~ 141 (379)
..+.|+|.-.. ++-+-.-|+ ..++|....+.+.++.... .+.--=.|||||.+|...-.| |.|-|||.+..
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 35677775433 555555554 5678888777665553321 111122599999999876443 77999998865
Q ss_pred CCCCCCcceeeeecccccceEEEEEecCCCceEEE
Q 016974 142 TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLIT 176 (379)
Q Consensus 142 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 176 (379)
....++ +..|----..+.+.+|+. .++.
T Consensus 151 fqrvgE------~~t~GiGpHev~lm~DGr-tlvv 178 (366)
T COG3490 151 FQRVGE------FSTHGIGPHEVTLMADGR-TLVV 178 (366)
T ss_pred cceecc------cccCCcCcceeEEecCCc-EEEE
Confidence 443333 233433334566777754 3443
No 422
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=89.16 E-value=10 Score=31.59 Aligned_cols=48 Identities=13% Similarity=0.216 Sum_probs=33.0
Q ss_pred CEEEEeeCCCeEEEEECCC--CceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEE
Q 016974 263 NRFGTGSDDGTCRLFDIRT--GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY 316 (379)
Q Consensus 263 ~~l~s~s~D~~i~iwd~~~--~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~ 316 (379)
+.|..+.....|.+|++.+ ...+..+. ..+.|..+.++..|.||++-=
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~------Tv~~V~~l~y~~~GDYlvTlE 78 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS------TVGRVLQLVYSEAGDYLVTLE 78 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc------chhheeEEEeccccceEEEEE
Confidence 4554445667899999883 22333332 235689999999999999953
No 423
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.09 E-value=9.2 Score=36.14 Aligned_cols=32 Identities=16% Similarity=0.393 Sum_probs=23.4
Q ss_pred eEEEEEecCC--CceEEEeeCCCeEEEeecCCCe
Q 016974 161 VSCCQYVPDE--DTHLITSSGDQTCVLWDITTGL 192 (379)
Q Consensus 161 v~~~~~~~~~--~~~l~s~~~d~~i~~wd~~~~~ 192 (379)
+..++|+|+. +..|+.-+.|++|++||+....
T Consensus 168 l~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 168 LKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPT 201 (741)
T ss_pred eeeccccCCccCCceEEEEecCcEEEEEecCCcc
Confidence 4456788876 6677777888888888876543
No 424
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.56 E-value=16 Score=31.86 Aligned_cols=99 Identities=15% Similarity=0.218 Sum_probs=59.6
Q ss_pred EEEecCCCceEEEeeCCCeEE-EeecCCCeeEEEecCc---cccCCccCeEEEEEeCCCCcEEEEec-----CCCcEEEE
Q 016974 164 CQYVPDEDTHLITSSGDQTCV-LWDITTGLRTSVFGGE---FQSGHTADVLSVSISGSNSRMFVSGS-----CDSTARLW 234 (379)
Q Consensus 164 ~~~~~~~~~~l~s~~~d~~i~-~wd~~~~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~~~l~sg~-----~d~~i~vw 234 (379)
+.++|.....++.+-.-|+.. ++|.........+... ...+|. .|++ ++.+|...- ..|.|-||
T Consensus 73 i~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~-dG~~LYATEndfd~~rGViGvY 145 (366)
T COG3490 73 IAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSP-DGRLLYATENDFDPNRGVIGVY 145 (366)
T ss_pred eecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCC-CCcEEEeecCCCCCCCceEEEE
Confidence 455665555566666666643 5776655433332211 112331 2444 555554332 23679999
Q ss_pred EccCCccceEEEecccCCeeEEEEccCCCEEEEee
Q 016974 235 DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS 269 (379)
Q Consensus 235 d~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s 269 (379)
|.+..-..+.++..|.---..+.+.+||+.++.+.
T Consensus 146 d~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 146 DAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred ecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 99865555667777877788899999999887663
No 425
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=88.23 E-value=16 Score=31.56 Aligned_cols=190 Identities=13% Similarity=0.168 Sum_probs=105.7
Q ss_pred ceEEEEEecCCCceEEEeeCCC--eEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEcc
Q 016974 160 YVSCCQYVPDEDTHLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR 237 (379)
Q Consensus 160 ~v~~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~ 237 (379)
....+.|..+ +.++-|.+.-| .|+.+|+.++......... ..----.++.. +.+++.-.=.++...+||..
T Consensus 46 FTQGL~~~~~-g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~----~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~ 118 (264)
T PF05096_consen 46 FTQGLEFLDD-GTLYESTGLYGQSSLRKVDLETGKVLQSVPLP----PRYFGEGITIL--GDKLYQLTWKEGTGFVYDPN 118 (264)
T ss_dssp EEEEEEEEET-TEEEEEECSTTEEEEEEEETTTSSEEEEEE-T----TT--EEEEEEE--TTEEEEEESSSSEEEEEETT
T ss_pred cCccEEecCC-CEEEEeCCCCCcEEEEEEECCCCcEEEEEECC----ccccceeEEEE--CCEEEEEEecCCeEEEEccc
Confidence 4456677554 35566666655 6889999998654332211 11111223333 34556566678889999987
Q ss_pred CCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEe
Q 016974 238 VASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 317 (379)
Q Consensus 238 ~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~ 317 (379)
+. +.+..+. ..+.-+.++ .||+.|+.......+.++|..+-+....+...........++-+.|- +|...|--..
T Consensus 119 tl-~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~ 193 (264)
T PF05096_consen 119 TL-KKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQ 193 (264)
T ss_dssp TT-EEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETT
T ss_pred cc-eEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCC
Confidence 65 4455553 334556677 46777766655668999999887665554333222234456667774 6655555556
Q ss_pred cCcEEEEeCCCceEEEecc--ccc------CC---ccCceeEEEECCCCC-eEEEe
Q 016974 318 NGDCYVWDTLLAKVVLNLG--SLQ------NS---HEGRITCLGLSADGS-ALCTG 361 (379)
Q Consensus 318 dg~i~iwd~~~~~~~~~~~--~~~------~~---h~~~v~~~~~s~d~~-~l~s~ 361 (379)
...|..-|..+++....+. .+. .. -..-.+.+|+.|..+ +++||
T Consensus 194 td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 194 TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 6677888888887765431 110 01 134579999987665 44454
No 426
>PRK13684 Ycf48-like protein; Provisional
Probab=88.08 E-value=10 Score=34.34 Aligned_cols=113 Identities=17% Similarity=0.133 Sum_probs=0.0
Q ss_pred cCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCc
Q 016974 250 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA 329 (379)
Q Consensus 250 ~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~ 329 (379)
.+.+.++.+.|++.+++++......+.+|-.... ...........++++.+.++++.+++|.. |.+++=....+
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~t-----W~~~~~~~~~~l~~i~~~~~g~~~~vg~~-G~~~~~s~d~G 245 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTA-----WTPHQRNSSRRLQSMGFQPDGNLWMLARG-GQIRFNDPDDL 245 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcCCCCCe-----EEEeeCCCcccceeeeEcCCCCEEEEecC-CEEEEccCCCC
Q ss_pred eEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEE
Q 016974 330 KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLK 368 (379)
Q Consensus 330 ~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~ 368 (379)
..-.........-...+..+.+.|++..++.+.....++
T Consensus 246 ~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~ 284 (334)
T PRK13684 246 ESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLV 284 (334)
T ss_pred CccccccCCccccccceeeEEEcCCCCEEEEcCCCeEEE
No 427
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=87.56 E-value=3.7 Score=40.05 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=28.0
Q ss_pred CeeEEEEcc----CCCEEEEeeCCCeEEEEECCCCceeEEE
Q 016974 252 DVNTVKFFP----DGNRFGTGSDDGTCRLFDIRTGHQLQVY 288 (379)
Q Consensus 252 ~v~~v~~sp----~g~~l~s~s~D~~i~iwd~~~~~~~~~~ 288 (379)
.+..+++++ +..++++.+.|+++|+||+.+++.+...
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 355566666 6788999999999999999999885543
No 428
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=87.29 E-value=37 Score=34.67 Aligned_cols=70 Identities=19% Similarity=0.064 Sum_probs=50.1
Q ss_pred CeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEec----c------c-ccC----CccCceeEEEECCCCCeEEEeeC
Q 016974 299 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL----G------S-LQN----SHEGRITCLGLSADGSALCTGSW 363 (379)
Q Consensus 299 ~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~----~------~-~~~----~h~~~v~~~~~s~d~~~l~s~s~ 363 (379)
.|.++....-+.+++....||+|.++|..+-+.+... . . ++. .+-.++..++|||.+..++.-..
T Consensus 261 ~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~ 340 (753)
T PF11635_consen 261 RVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDE 340 (753)
T ss_pred eEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEec
Confidence 4778888788889999999999999996655333222 0 0 001 12224556899999999999999
Q ss_pred CCcEE
Q 016974 364 DTNLK 368 (379)
Q Consensus 364 D~~i~ 368 (379)
||.+.
T Consensus 341 ~~~~~ 345 (753)
T PF11635_consen 341 DGKTK 345 (753)
T ss_pred CCCce
Confidence 99866
No 429
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=87.14 E-value=22 Score=33.42 Aligned_cols=30 Identities=20% Similarity=0.444 Sum_probs=25.2
Q ss_pred ceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 345 RITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 345 ~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
.|..++..+..+.|++.+.+++|.+|+++.
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 389999988889999999999999999974
No 430
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=87.03 E-value=26 Score=32.65 Aligned_cols=197 Identities=14% Similarity=0.116 Sum_probs=81.7
Q ss_pred eEEEeeCCCeEEEeecCCC----eeEEEecCc-ccc-CCccCeEEEEEeCCCCcEEEEe--cCC----CcEEEEEccCCc
Q 016974 173 HLITSSGDQTCVLWDITTG----LRTSVFGGE-FQS-GHTADVLSVSISGSNSRMFVSG--SCD----STARLWDTRVAS 240 (379)
Q Consensus 173 ~l~s~~~d~~i~~wd~~~~----~~~~~~~~~-~~~-~h~~~v~~~~~~~~~~~~l~sg--~~d----~~i~vwd~~~~~ 240 (379)
+++-|-..+.|.+.|..+. ...++++.+ ... ..-..-..+-.. +++++++|+ ..+ |.+-+.|-.+.
T Consensus 90 Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hcl-p~G~imIS~lGd~~G~g~Ggf~llD~~tf- 167 (461)
T PF05694_consen 90 LILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCL-PDGRIMISALGDADGNGPGGFVLLDGETF- 167 (461)
T ss_dssp EEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE--SS--EEEEEEEETTS-S--EEEEE-TTT--
T ss_pred EEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeec-CCccEEEEeccCCCCCCCCcEEEEcCccc-
Confidence 3455557889999998743 333333321 000 000001112222 355566663 222 34555554422
Q ss_pred cceEEEecc---cCCeeEEEEccCCCEEEEeeC--------------------CCeEEEEECCCCceeEEEeeccCCCCC
Q 016974 241 RAVRTFHGH---EGDVNTVKFFPDGNRFGTGSD--------------------DGTCRLFDIRTGHQLQVYYQQHGENEI 297 (379)
Q Consensus 241 ~~~~~~~~h---~~~v~~v~~sp~g~~l~s~s~--------------------D~~i~iwd~~~~~~~~~~~~~~~~~~~ 297 (379)
......... ...-+.+.|.|..+.++|... ..++.+||+.+.+.++.+.-.. +.
T Consensus 168 ~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~---~g 244 (461)
T PF05694_consen 168 EVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGE---EG 244 (461)
T ss_dssp -EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-T---TE
T ss_pred cccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCC---CC
Confidence 222222221 122456677777777776542 3589999999998887764321 11
Q ss_pred CCeEEEEEcc--CCCEEEEEE-ecCcEEEE-eCCCce----EEEecccc-----c-CC-------ccCceeEEEECCCCC
Q 016974 298 PHVTSIAFSI--SGRLLFAGY-SNGDCYVW-DTLLAK----VVLNLGSL-----Q-NS-------HEGRITCLGLSADGS 356 (379)
Q Consensus 298 ~~v~~~~fs~--~g~~l~sg~-~dg~i~iw-d~~~~~----~~~~~~~~-----~-~~-------h~~~v~~~~~s~d~~ 356 (379)
.-..-+.|.+ +..+-++|+ -.++|..| ....++ .+..+... . .. -..-|+.|.+|.|.+
T Consensus 245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr 324 (461)
T PF05694_consen 245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR 324 (461)
T ss_dssp EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence 1234566644 445545544 23345544 222221 11111100 0 00 034589999999999
Q ss_pred eEEEeeC-CCcEEEEecCc
Q 016974 357 ALCTGSW-DTNLKIWAFGG 374 (379)
Q Consensus 357 ~l~s~s~-D~~i~vw~~~~ 374 (379)
+|..+.+ +|.||.||+..
T Consensus 325 fLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 325 FLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp EEEEEETTTTEEEEEE-SS
T ss_pred EEEEEcccCCcEEEEecCC
Confidence 9998777 89999999876
No 431
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=86.95 E-value=0.085 Score=48.49 Aligned_cols=143 Identities=12% Similarity=0.214 Sum_probs=90.0
Q ss_pred EEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEe-eCCCeEEEEECCCCceeEEE
Q 016974 210 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGHQLQVY 288 (379)
Q Consensus 210 ~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~-s~D~~i~iwd~~~~~~~~~~ 288 (379)
....+-+.+.+ ++.++.+-.+..||-.. +..-... -++....++|..+|+.++.. -..+.+.+||+.+...-+ +
T Consensus 38 i~~~w~~e~~n-lavaca~tiv~~YD~ag--q~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq-L 112 (615)
T KOG2247|consen 38 IIHRWRPEGHN-LAVACANTIVIYYDKAG--QVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ-L 112 (615)
T ss_pred ceeeEecCCCc-eehhhhhhHHHhhhhhc--ceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH-H
Confidence 33445554555 56677777888887432 2221221 23445567887788776544 467789999997642111 1
Q ss_pred eeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCc
Q 016974 289 YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTN 366 (379)
Q Consensus 289 ~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~ 366 (379)
+.+.++.. .-+.|++.+..++.|...|.+.|++-.+.+.+..+ ..|..+++++++.+.+.. +.++.|.+
T Consensus 113 --E~gg~~s~--sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~----Gkh~RRgtq~av~lEd~v-il~dcd~~ 181 (615)
T KOG2247|consen 113 --ESGGTSSK--SLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVM----GKHQRRGTQIAVTLEDYV-ILCDCDNT 181 (615)
T ss_pred --hccCcchH--HHHhhccCCccccccccccceEEEeccchhhhhhh----cccccceeEEEeccccee-eecCcHHH
Confidence 01111111 12678999999999999999999997766655544 348889999999987664 44555543
No 432
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=86.90 E-value=21 Score=31.34 Aligned_cols=148 Identities=14% Similarity=0.111 Sum_probs=86.3
Q ss_pred CCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCc
Q 016974 121 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 200 (379)
Q Consensus 121 g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 200 (379)
+++...+..+.-++|.|+.++..+.. ...+. -.+.-+++..+ +++...+..|.-+.+.|+.+.......+ .
T Consensus 96 e~yvyvad~ssGL~IvDIS~P~sP~~----~~~ln-t~gyaygv~vs---Gn~aYVadlddgfLivdvsdpssP~lag-r 166 (370)
T COG5276 96 EEYVYVADWSSGLRIVDISTPDSPTL----IGFLN-TDGYAYGVYVS---GNYAYVADLDDGFLIVDVSDPSSPQLAG-R 166 (370)
T ss_pred ccEEEEEcCCCceEEEeccCCCCcce----ecccc-CCceEEEEEec---CCEEEEeeccCcEEEEECCCCCCceeee-e
Confidence 67777888888999999987654321 11111 11333344432 3567777767777888887654332221 1
Q ss_pred cccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccC-CeeEEEEccCCCEEEEeeCCCeEEEEEC
Q 016974 201 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG-DVNTVKFFPDGNRFGTGSDDGTCRLFDI 279 (379)
Q Consensus 201 ~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~-~v~~v~~sp~g~~l~s~s~D~~i~iwd~ 279 (379)
+ .........+.++. ++...+..|+.+.+-|+.....++..-.-..+ .+.++..+++-.+++... .-+.+-|.
T Consensus 167 y-a~~~~d~~~v~ISG---n~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~--egvlivd~ 240 (370)
T COG5276 167 Y-ALPGGDTHDVAISG---NYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD--EGVLIVDV 240 (370)
T ss_pred e-ccCCCCceeEEEec---CeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc--cceEEEec
Confidence 1 11122224455543 45666778999999999876555543222233 678888887766665543 34666676
Q ss_pred CCCc
Q 016974 280 RTGH 283 (379)
Q Consensus 280 ~~~~ 283 (379)
.+.+
T Consensus 241 s~~s 244 (370)
T COG5276 241 SGPS 244 (370)
T ss_pred CCCC
Confidence 5544
No 433
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.56 E-value=17 Score=33.78 Aligned_cols=121 Identities=15% Similarity=0.202 Sum_probs=74.8
Q ss_pred ccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEE
Q 016974 156 GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWD 235 (379)
Q Consensus 156 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd 235 (379)
...|+|.++.|++|+ +.|+.--.|++|.+.+............++ ...+..|....|..+ .-+|--+ +..+.+|.
T Consensus 64 ~d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~~~l~~~~~c-k~k~~~IlGF~W~~s--~e~A~i~-~~G~e~y~ 138 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDNSQLEYTQEC-KTKNANILGFCWTSS--TEIAFIT-DQGIEFYQ 138 (657)
T ss_pred cCCCceeEEEeccCc-ceEEEEecCceEEEEecCCCchhhHHHHHh-ccCcceeEEEEEecC--eeEEEEe-cCCeEEEE
Confidence 346799999999985 678999999999999874322111111111 223345777777754 2233222 23477787
Q ss_pred ccCCccceEEEecccCCeeEEEEccCCCEEEEee--CCCeEEEEECCC
Q 016974 236 TRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS--DDGTCRLFDIRT 281 (379)
Q Consensus 236 ~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s--~D~~i~iwd~~~ 281 (379)
+....+.++..+.|...|+--.|.|+.+.+.-++ ..+++.=+.+++
T Consensus 139 v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~ 186 (657)
T KOG2377|consen 139 VLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRA 186 (657)
T ss_pred EchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEee
Confidence 7666566666777888888888888877543332 444554444443
No 434
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.38 E-value=6.6 Score=41.15 Aligned_cols=147 Identities=17% Similarity=0.285 Sum_probs=80.4
Q ss_pred cCCCcEEEEEccCCccceEEEecccCCeeEEEE-cc-------CCCEEEEeeCCCeEEEEECCCCce---eEEEeeccC-
Q 016974 226 SCDSTARLWDTRVASRAVRTFHGHEGDVNTVKF-FP-------DGNRFGTGSDDGTCRLFDIRTGHQ---LQVYYQQHG- 293 (379)
Q Consensus 226 ~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~-sp-------~g~~l~s~s~D~~i~iwd~~~~~~---~~~~~~~~~- 293 (379)
+-|+.+.+|+.... .....+.+-...|..|.. -| .=+++...+.--.|.++-+.-.+. ...+.....
T Consensus 96 TiDn~L~lWny~~~-~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i 174 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESD-NELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKI 174 (1311)
T ss_pred EeCCeEEEEEcCCC-CccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceee
Confidence 35778999999864 344455555556666543 12 222333222223344443321110 001100000
Q ss_pred CCCCCCeEEEEEccCCCEEEEEEecCcEEE--EeCCCc------eE-----------EEecccccCCccCceeEEEECCC
Q 016974 294 ENEIPHVTSIAFSISGRLLFAGYSNGDCYV--WDTLLA------KV-----------VLNLGSLQNSHEGRITCLGLSAD 354 (379)
Q Consensus 294 ~~~~~~v~~~~fs~~g~~l~sg~~dg~i~i--wd~~~~------~~-----------~~~~~~~~~~h~~~v~~~~~s~d 354 (379)
......|+++....+|+.+++| .||.|+- |....+ +. +.++-.....+.++|..+++...
T Consensus 175 ~~dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 175 SVDGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS 253 (1311)
T ss_pred ecCCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence 0112358899988899877766 4554442 221111 11 11111111246779999999888
Q ss_pred CCeEEEeeCCCcEEEEecCc
Q 016974 355 GSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 355 ~~~l~s~s~D~~i~vw~~~~ 374 (379)
-+.|.+=+.-++|.+|++++
T Consensus 254 R~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cceeeeeccCceEEEEEccC
Confidence 88999999999999999987
No 435
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=86.34 E-value=15 Score=36.50 Aligned_cols=106 Identities=7% Similarity=0.093 Sum_probs=66.8
Q ss_pred CCcEEEEecCCCcEEEEEccCCc-------------------cceEEEecccCCeeEEEEc--cCCCEEEEeeCCCeEEE
Q 016974 218 NSRMFVSGSCDSTARLWDTRVAS-------------------RAVRTFHGHEGDVNTVKFF--PDGNRFGTGSDDGTCRL 276 (379)
Q Consensus 218 ~~~~l~sg~~d~~i~vwd~~~~~-------------------~~~~~~~~h~~~v~~v~~s--p~g~~l~s~s~D~~i~i 276 (379)
+...|+.+..||.|.+|.+...- ++...+. -...+++++++ ...++||.+++-..|.|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 45688889999999999753110 0112222 23478999998 78888999888888888
Q ss_pred EECCCCceeEEEeeccCCCCCCCeEEEEEccCC-----C-EEEEEEecCcEEEEeC
Q 016974 277 FDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG-----R-LLFAGYSNGDCYVWDT 326 (379)
Q Consensus 277 wd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g-----~-~l~sg~~dg~i~iwd~ 326 (379)
|-............. ......|-+|+|-++. . +|++++=.|.+.+|+.
T Consensus 192 Faf~l~~~r~~~~~s--~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDERFYHVPS--HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEeccccccccccc--cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 765432110000000 1122246778886543 2 7888888999998875
No 436
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=86.23 E-value=25 Score=31.69 Aligned_cols=120 Identities=19% Similarity=0.285 Sum_probs=68.0
Q ss_pred eeEEEEccCCCEEEEeeCC------CeEEEEECCCCceeEEEeecc----------CCCCCCCeEEEEEccCCCEEEEEE
Q 016974 253 VNTVKFFPDGNRFGTGSDD------GTCRLFDIRTGHQLQVYYQQH----------GENEIPHVTSIAFSISGRLLFAGY 316 (379)
Q Consensus 253 v~~v~~sp~g~~l~s~s~D------~~i~iwd~~~~~~~~~~~~~~----------~~~~~~~v~~~~fs~~g~~l~sg~ 316 (379)
..++++.++|.++++.=.+ ..|.-++.. |+.+..+.-+. ........-+++++|+|+.|++..
T Consensus 87 ~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 87 PEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred hhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 4578887788877776566 678888866 65544431111 112234578999999999666653
Q ss_pred e-----cC--c-------EEE--EeCCC-ceEEEecccccCC-----ccCceeEEEECCCCCeEEE-----eeCCCcEEE
Q 016974 317 S-----NG--D-------CYV--WDTLL-AKVVLNLGSLQNS-----HEGRITCLGLSADGSALCT-----GSWDTNLKI 369 (379)
Q Consensus 317 ~-----dg--~-------i~i--wd~~~-~~~~~~~~~~~~~-----h~~~v~~~~~s~d~~~l~s-----~s~D~~i~v 369 (379)
. |+ . +++ ||..+ +.....+...... ....|..+.+-+++++|+- ......++|
T Consensus 166 E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri 245 (326)
T PF13449_consen 166 ESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRI 245 (326)
T ss_pred CccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEE
Confidence 2 32 1 444 45443 2111111111111 3456788888899988774 113455666
Q ss_pred EecC
Q 016974 370 WAFG 373 (379)
Q Consensus 370 w~~~ 373 (379)
+.+.
T Consensus 246 ~~v~ 249 (326)
T PF13449_consen 246 YRVD 249 (326)
T ss_pred EEEE
Confidence 6544
No 437
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=86.13 E-value=29 Score=32.29 Aligned_cols=115 Identities=10% Similarity=0.028 Sum_probs=63.2
Q ss_pred cCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeE--EEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCC
Q 016974 250 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ--VYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 327 (379)
Q Consensus 250 ~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~--~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~ 327 (379)
...+.++.|.+++..++++ .+|.+.. ....+..-. .+...........+..+.|.+++..+++| ..|.+.... .
T Consensus 280 ~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D 355 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-D 355 (398)
T ss_pred ccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-C
Confidence 4568899999998877655 5666543 323332110 11111111112347889999888776655 567666653 2
Q ss_pred CceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEE
Q 016974 328 LAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 370 (379)
Q Consensus 328 ~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw 370 (379)
.++.-..... ...-....+.+.|.++++..+ .+.+|.|.-|
T Consensus 356 ~G~tW~~~~~-~~~~~~~ly~v~f~~~~~g~~-~G~~G~il~~ 396 (398)
T PLN00033 356 GGKSWKRDKG-ADNIAANLYSVKFFDDKKGFV-LGNDGVLLRY 396 (398)
T ss_pred CCcceeEccc-cCCCCcceeEEEEcCCCceEE-EeCCcEEEEe
Confidence 2332111110 022345788999987777666 4566776544
No 438
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=85.99 E-value=2.1 Score=27.38 Aligned_cols=29 Identities=31% Similarity=0.360 Sum_probs=25.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016974 4 SVSELKERHAAAIETVNSLRERLKQKRQQ 32 (379)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (379)
||+||+++++.+...+.+++..+..++..
T Consensus 22 Sv~EL~~RIa~L~aEI~R~~~~~~~K~a~ 50 (59)
T PF06698_consen 22 SVEELEERIALLEAEIARLEAAIAKKSAS 50 (59)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999888877543
No 439
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=85.71 E-value=25 Score=31.09 Aligned_cols=235 Identities=13% Similarity=0.183 Sum_probs=121.1
Q ss_pred eEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeecc-----cccceEEEEEecCC-----------CceEE
Q 016974 112 VMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSG-----HKGYVSCCQYVPDE-----------DTHLI 175 (379)
Q Consensus 112 v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~-----h~~~v~~~~~~~~~-----------~~~l~ 175 (379)
-+.++|+|.+..-++....+...+||.+......-..++.-++.. -....+-+.|+... ...++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 467889999998888888899999998733211111122222221 11234444554321 12367
Q ss_pred EeeCCCeEEEeecCCCee---EEEecCccccCCccCe-EEEEEe--CCCCcEEEEecCCCcEEEEEccCCccce-EEEec
Q 016974 176 TSSGDQTCVLWDITTGLR---TSVFGGEFQSGHTADV-LSVSIS--GSNSRMFVSGSCDSTARLWDTRVASRAV-RTFHG 248 (379)
Q Consensus 176 s~~~d~~i~~wd~~~~~~---~~~~~~~~~~~h~~~v-~~~~~~--~~~~~~l~sg~~d~~i~vwd~~~~~~~~-~~~~~ 248 (379)
.++.||+|.-|...-+.. ...+.. ..+....| ..+++. .....++++-=..++|.++|-......+ ..+..
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~--d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D 182 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVV--DASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID 182 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEE--ccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence 888999999998533222 111100 01111222 233333 2234455555567899999865321110 00000
Q ss_pred ----------------ccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEc------
Q 016974 249 ----------------HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS------ 306 (379)
Q Consensus 249 ----------------h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs------ 306 (379)
-.-.|+-..-.++.+.=+.|..-|.|-+||+. ++.++.+..... ...-..++..
T Consensus 183 P~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~---LNaPWG~a~APa~FG~ 258 (336)
T TIGR03118 183 PALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGR---LNAPWGLAIAPESFGS 258 (336)
T ss_pred CCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCc---ccCCceeeeChhhhCC
Confidence 00012222222333333344445689999975 566655532211 1122344442
Q ss_pred cCCCEEEEEEecCcEEEEeCCCceEEEecccccCCc---cCceeEEEECC
Q 016974 307 ISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH---EGRITCLGLSA 353 (379)
Q Consensus 307 ~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h---~~~v~~~~~s~ 353 (379)
..|.+|+.-..||+|..||..+++.+-.+... .++ ...++.|+|..
T Consensus 259 ~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~-~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 259 LSGALLVGNFGDGTINAYDPQSGAQLGQLLDP-DNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCCeEEeecCCceeEEecCCCCceeeeecCC-CCCeEEecCeEEeeeCC
Confidence 35677877788999999998877765554321 111 13467778754
No 440
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=85.68 E-value=4.9 Score=23.18 Aligned_cols=31 Identities=13% Similarity=0.200 Sum_probs=22.8
Q ss_pred CCCCeEEE-EcCCCcEEEEECCCCceeeEeec
Q 016974 77 SERNRIVS-ASQDGRLIVWNALTSQKTHAIKL 107 (379)
Q Consensus 77 ~~~~~l~s-~s~D~~v~iwd~~~~~~~~~~~~ 107 (379)
|+++.|+. .-.+++|.++|..+++....+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 46666554 45688999999988877777665
No 441
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=85.29 E-value=26 Score=30.97 Aligned_cols=60 Identities=17% Similarity=0.167 Sum_probs=38.3
Q ss_pred eEEEEEccCCCEEEEEEecCcEEEEeCCCce---EEEecccccCCc-cCceeEEEECC--CCCeEEEe
Q 016974 300 VTSIAFSISGRLLFAGYSNGDCYVWDTLLAK---VVLNLGSLQNSH-EGRITCLGLSA--DGSALCTG 361 (379)
Q Consensus 300 v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~---~~~~~~~~~~~h-~~~v~~~~~s~--d~~~l~s~ 361 (379)
...++++++|.+.++--..+.|..|+....- ....+.. ... -..+..+++.+ +|.+.+.+
T Consensus 188 s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~--d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 188 SDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQ--DPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp ECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE---CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEE--cCceeeccceeeeccccCceEEEEE
Confidence 4578899999888888899999999976521 1111110 111 34568888888 77766654
No 442
>PRK10115 protease 2; Provisional
Probab=85.16 E-value=45 Score=33.65 Aligned_cols=71 Identities=7% Similarity=-0.059 Sum_probs=44.2
Q ss_pred cEEEEEeeCCCCeEEEE-----cCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCC------CcEEEEE
Q 016974 69 KVYSLDWTSERNRIVSA-----SQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLD------SVCSIFN 137 (379)
Q Consensus 69 ~v~~~~~~~~~~~l~s~-----s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d------~~i~iw~ 137 (379)
.+..+.|+||+++|+-+ +...++++-|+.++..+...-.. .. ..++|++|++.|+....+ ..+..++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~-~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN-VE-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC-cc-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 36678899999987644 22236888899877633221111 11 458999999877665543 2455566
Q ss_pred cCCC
Q 016974 138 LNSP 141 (379)
Q Consensus 138 ~~~~ 141 (379)
+.++
T Consensus 206 lgt~ 209 (686)
T PRK10115 206 IGTP 209 (686)
T ss_pred CCCC
Confidence 6543
No 443
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=85.04 E-value=29 Score=31.31 Aligned_cols=111 Identities=20% Similarity=0.289 Sum_probs=61.3
Q ss_pred CCeeEEEEccCCCEEEEeeCCCe------EEEEECCC--C--ceeEE-----EeeccCCC---CCCCeEEEEEccCCCEE
Q 016974 251 GDVNTVKFFPDGNRFGTGSDDGT------CRLFDIRT--G--HQLQV-----YYQQHGEN---EIPHVTSIAFSISGRLL 312 (379)
Q Consensus 251 ~~v~~v~~sp~g~~l~s~s~D~~------i~iwd~~~--~--~~~~~-----~~~~~~~~---~~~~v~~~~fs~~g~~l 312 (379)
+.+..+.+.|++..+++.|+++. +..+++.. + ..+.. +....+.. .....-++++.++|.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 34567788766667777788777 55555443 1 11110 11111100 00134578887788777
Q ss_pred EEEEec------CcEEEEeCCCceEEEec---cc--------ccCCccCceeEEEECCCCCeEEEee
Q 016974 313 FAGYSN------GDCYVWDTLLAKVVLNL---GS--------LQNSHEGRITCLGLSADGSALCTGS 362 (379)
Q Consensus 313 ~sg~~d------g~i~iwd~~~~~~~~~~---~~--------~~~~h~~~v~~~~~s~d~~~l~s~s 362 (379)
++.=.+ -.|+.++.. ++....+ .. .....+.....++++|||+.|.++-
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 765455 578888754 4432222 11 1122456789999999999655543
No 444
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=84.77 E-value=23 Score=29.96 Aligned_cols=92 Identities=16% Similarity=0.249 Sum_probs=58.8
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEEcc--CC----ccceEEEec---ccC-CeeEEEEccCCCEEEEeeCCCeEEEEECC
Q 016974 211 SVSISGSNSRMFVSGSCDSTARLWDTR--VA----SRAVRTFHG---HEG-DVNTVKFFPDGNRFGTGSDDGTCRLFDIR 280 (379)
Q Consensus 211 ~~~~~~~~~~~l~sg~~d~~i~vwd~~--~~----~~~~~~~~~---h~~-~v~~v~~sp~g~~l~s~s~D~~i~iwd~~ 280 (379)
.++|+.....+..+-+.+-.|.-||.. +. .+.+..++. .+. ....++...+|...++.-+.++|...|+.
T Consensus 162 gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~ 241 (310)
T KOG4499|consen 162 GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPT 241 (310)
T ss_pred cccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCC
Confidence 455654344455667777788778732 21 122222221 111 12345556688888888899999999999
Q ss_pred CCceeEEEeeccCCCCCCCeEEEEEcc
Q 016974 281 TGHQLQVYYQQHGENEIPHVTSIAFSI 307 (379)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~v~~~~fs~ 307 (379)
+|+.+..+.-+ ...|++++|--
T Consensus 242 tGK~L~eiklP-----t~qitsccFgG 263 (310)
T KOG4499|consen 242 TGKILLEIKLP-----TPQITSCCFGG 263 (310)
T ss_pred CCcEEEEEEcC-----CCceEEEEecC
Confidence 99998877654 34589999953
No 445
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=83.95 E-value=0.65 Score=46.19 Aligned_cols=97 Identities=15% Similarity=0.240 Sum_probs=57.6
Q ss_pred ccccccccEEEEEeeCC-CCeEEEEcCCCcEEEEECC--CCceeeEeec----C----CcceEEEEECCCCCEEEEeeCC
Q 016974 62 TLQGHAGKVYSLDWTSE-RNRIVSASQDGRLIVWNAL--TSQKTHAIKL----P----CAWVMTCAFSPTGQSVACGGLD 130 (379)
Q Consensus 62 ~l~gH~~~v~~~~~~~~-~~~l~s~s~D~~v~iwd~~--~~~~~~~~~~----~----~~~v~~~~~s~~g~~l~~~~~d 130 (379)
.++|..+.|..+.|.+- ...++ -.=|.+.+||+. .|+....+.. + ..-|.-|-|-++.-++.++-.+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 46778888888888652 22232 233678888763 3443222211 1 1234445566677888888899
Q ss_pred CcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEec
Q 016974 131 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP 168 (379)
Q Consensus 131 ~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 168 (379)
+.+++.+++... ...+.+|...+..++|..
T Consensus 205 ~~i~lL~~~ra~--------~~l~rsHs~~~~d~a~~~ 234 (1283)
T KOG1916|consen 205 GEIRLLNINRAL--------RSLFRSHSQRVTDMAFFA 234 (1283)
T ss_pred CceeEeeechHH--------HHHHHhcCCCcccHHHHh
Confidence 999988876422 133456766666555543
No 446
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.15 E-value=52 Score=32.81 Aligned_cols=54 Identities=15% Similarity=0.186 Sum_probs=37.8
Q ss_pred cCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEcCCC
Q 016974 86 SQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSP 141 (379)
Q Consensus 86 s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~ 141 (379)
+.--.|+|+++. |+.+..+-...+.+..+.|+.+ +.|++...||++.+|++-..
T Consensus 61 ~a~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ge 114 (829)
T KOG2280|consen 61 SARPYIRIFNIS-GQLLGRILWKHGELIGMGWSDD-EELICVQKDGTVHVYGLLGE 114 (829)
T ss_pred ccceeEEEEecc-ccchHHHHhcCCCeeeecccCC-ceEEEEeccceEEEeecchh
Confidence 344568888854 6666555444456777888865 45667789999999998753
No 447
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=82.53 E-value=3.2 Score=40.47 Aligned_cols=40 Identities=28% Similarity=0.303 Sum_probs=30.2
Q ss_pred cEEEEEeeC----CCCeEEEEcCCCcEEEEECCCCceeeEeecC
Q 016974 69 KVYSLDWTS----ERNRIVSASQDGRLIVWNALTSQKTHAIKLP 108 (379)
Q Consensus 69 ~v~~~~~~~----~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 108 (379)
.+.+++++. +..+|++.+.|+++|+||+.+++++.+....
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEeccc
Confidence 345555555 6789999999999999999999997776544
No 448
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=81.68 E-value=38 Score=31.54 Aligned_cols=111 Identities=18% Similarity=0.186 Sum_probs=60.1
Q ss_pred eeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCce--
Q 016974 253 VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK-- 330 (379)
Q Consensus 253 v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~-- 330 (379)
...+..+++|.+++.+..-..++-||-.. . +.+.........++.+.|.++|.+++++ .+|.+.. ....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~--~---~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~ 313 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQ--P---YWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTE 313 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCC--c---ceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcc
Confidence 45566778887777665544444455321 1 0011111223457899999999988766 4455433 222222
Q ss_pred ---EEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecC
Q 016974 331 ---VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 373 (379)
Q Consensus 331 ---~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~ 373 (379)
....+.. ..-...++.+.|.++++.++ ++.+|.+....-+
T Consensus 314 ~~~~f~~~~~--~~~~~~l~~v~~~~d~~~~a-~G~~G~v~~s~D~ 356 (398)
T PLN00033 314 EDFDFEEADI--KSRGFGILDVGYRSKKEAWA-AGGSGILLRSTDG 356 (398)
T ss_pred cccceeeccc--CCCCcceEEEEEcCCCcEEE-EECCCcEEEeCCC
Confidence 1111110 11123588899998877665 5567777665433
No 449
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=81.28 E-value=7.8 Score=22.02 Aligned_cols=29 Identities=24% Similarity=0.476 Sum_probs=18.9
Q ss_pred ccCCeeEEEEccCCCEEEEeeC-C--CeEEEE
Q 016974 249 HEGDVNTVKFFPDGNRFGTGSD-D--GTCRLF 277 (379)
Q Consensus 249 h~~~v~~v~~sp~g~~l~s~s~-D--~~i~iw 277 (379)
....-....|||||++|+-.+. + |...||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3445677899999999876664 3 444444
No 450
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=80.99 E-value=30 Score=30.43 Aligned_cols=98 Identities=20% Similarity=0.272 Sum_probs=56.2
Q ss_pred CCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEE------ecCcEEEEeCCCceEEEeccc-ccCCcc
Q 016974 271 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY------SNGDCYVWDTLLAKVVLNLGS-LQNSHE 343 (379)
Q Consensus 271 D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~------~dg~i~iwd~~~~~~~~~~~~-~~~~h~ 343 (379)
-..|++||..+.+- . ..+.+-.+.|+.+.|..+.+++++|. ....+..||....... .+.. ....-.
T Consensus 15 C~~lC~yd~~~~qW----~-~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ip 88 (281)
T PF12768_consen 15 CPGLCLYDTDNSQW----S-SPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIP 88 (281)
T ss_pred CCEEEEEECCCCEe----e-cCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCC
Confidence 44699999775431 1 12222345799999987788888885 2346778997665432 2221 111234
Q ss_pred CceeEEEEC-CCC-CeEEEee-CCCcEEEEecCc
Q 016974 344 GRITCLGLS-ADG-SALCTGS-WDTNLKIWAFGG 374 (379)
Q Consensus 344 ~~v~~~~~s-~d~-~~l~s~s-~D~~i~vw~~~~ 374 (379)
++|..+.+. .|+ ++.+.|. .++...|..+++
T Consensus 89 gpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dG 122 (281)
T PF12768_consen 89 GPVTALTFISNDGSNFWVAGRSANGSTFLMKYDG 122 (281)
T ss_pred CcEEEEEeeccCCceEEEeceecCCCceEEEEcC
Confidence 678877763 233 3444443 455555544443
No 451
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=80.99 E-value=57 Score=31.75 Aligned_cols=192 Identities=16% Similarity=0.178 Sum_probs=99.8
Q ss_pred eEEEeeCCCeEEEeecCCCeeEEEecCccccCCccC------eEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEE
Q 016974 173 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTAD------VLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF 246 (379)
Q Consensus 173 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~------v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~ 246 (379)
.++.++.++.|.-.|..+|...-.+........... ...+.+. ++ .++.++.|+.|.-.|.++.+. +-..
T Consensus 71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~-~v~v~t~dg~l~ALDa~TGk~-~W~~ 146 (527)
T TIGR03075 71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DG-KVFFGTLDARLVALDAKTGKV-VWSK 146 (527)
T ss_pred EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CC-EEEEEcCCCEEEEEECCCCCE-Eeec
Confidence 455666677787788887754433221100000000 0011222 22 455677788888888776532 2221
Q ss_pred e--cccCCeeEEEEcc---CCCEEEEee------CCCeEEEEECCCCceeEEEeeccCC---------------------
Q 016974 247 H--GHEGDVNTVKFFP---DGNRFGTGS------DDGTCRLFDIRTGHQLQVYYQQHGE--------------------- 294 (379)
Q Consensus 247 ~--~h~~~v~~v~~sp---~g~~l~s~s------~D~~i~iwd~~~~~~~~~~~~~~~~--------------------- 294 (379)
. .+.. -..+.-+| ++ .++.++ .+|.|.-+|.++|+.+-.+......
T Consensus 147 ~~~~~~~-~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~ 224 (527)
T TIGR03075 147 KNGDYKA-GYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP 224 (527)
T ss_pred ccccccc-cccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence 1 1110 01111122 34 444443 2689999999999876443221110
Q ss_pred ------CCCCCeEEEEEccCCCEEEEEEec-----C-----------cEEEEeCCCceEEEecccccCCc--------cC
Q 016974 295 ------NEIPHVTSIAFSISGRLLFAGYSN-----G-----------DCYVWDTLLAKVVLNLGSLQNSH--------EG 344 (379)
Q Consensus 295 ------~~~~~v~~~~fs~~g~~l~sg~~d-----g-----------~i~iwd~~~~~~~~~~~~~~~~h--------~~ 344 (379)
.........+++|...+|+.+..+ + .|.--|..+++....... ..| ..
T Consensus 225 ~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~--~~~D~wD~d~~~~ 302 (527)
T TIGR03075 225 GDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQT--TPHDEWDYDGVNE 302 (527)
T ss_pred CCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeC--CCCCCccccCCCC
Confidence 000112355788877777777633 2 455567777877654422 122 12
Q ss_pred ceeEEEECCCCC---eEEEeeCCCcEEEEecC
Q 016974 345 RITCLGLSADGS---ALCTGSWDTNLKIWAFG 373 (379)
Q Consensus 345 ~v~~~~~s~d~~---~l~s~s~D~~i~vw~~~ 373 (379)
++. +.+..+|+ .|+.+..+|.+++.|-.
T Consensus 303 p~l-~d~~~~G~~~~~v~~~~K~G~~~vlDr~ 333 (527)
T TIGR03075 303 MIL-FDLKKDGKPRKLLAHADRNGFFYVLDRT 333 (527)
T ss_pred cEE-EEeccCCcEEEEEEEeCCCceEEEEECC
Confidence 222 33345776 78899999999988753
No 452
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=80.87 E-value=14 Score=29.68 Aligned_cols=29 Identities=41% Similarity=0.430 Sum_probs=23.7
Q ss_pred CeEEEEEccCC-----C-EEEEEEecCcEEEEeCC
Q 016974 299 HVTSIAFSISG-----R-LLFAGYSNGDCYVWDTL 327 (379)
Q Consensus 299 ~v~~~~fs~~g-----~-~l~sg~~dg~i~iwd~~ 327 (379)
.+.+++|||.| + +|++-+.+|.|.||...
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 68899999965 2 67778899999999754
No 453
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=79.94 E-value=5.8 Score=36.68 Aligned_cols=164 Identities=15% Similarity=0.112 Sum_probs=86.0
Q ss_pred CcceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCcceeeeeccc-ccceE-EEEEecCCCceEEEeeCCCeEEEe
Q 016974 109 CAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH-KGYVS-CCQYVPDEDTHLITSSGDQTCVLW 186 (379)
Q Consensus 109 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h-~~~v~-~~~~~~~~~~~l~s~~~d~~i~~w 186 (379)
...+..+-..|+|+.+..-+. ..+.++++.+..-...+ ......+. ...|+ .+... .++..|+.++.||.|.-|
T Consensus 220 ~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rk--l~~dspg~~~~~Vte~l~lL-~Gg~SLLv~~~dG~vsQW 295 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRK--LVDDSPGDSRHQVTEQLYLL-SGGFSLLVVHEDGLVSQW 295 (733)
T ss_pred ccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhh--hhhcCCCchHHHHHHHHHHH-hCceeEEEEcCCCceeee
Confidence 345666778999998877665 67888888753211111 00000110 01111 11111 234568888999999887
Q ss_pred -ecCCCee--EEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCC
Q 016974 187 -DITTGLR--TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN 263 (379)
Q Consensus 187 -d~~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~ 263 (379)
|.+.+.. ..... .+ .-....+..+... .+.+-|++=...|++.++.....+..+. +.--..+.-+++||.+.
T Consensus 296 Fdvr~~~~p~l~h~R-~f-~l~pa~~~~l~pe-~~rkgF~~l~~~G~L~~f~st~~~~lL~--~~~~~~~~~~~~Sp~~~ 370 (733)
T COG4590 296 FDVRRDGQPHLNHIR-NF-KLAPAEVQFLLPE-TNRKGFYSLYRNGTLQSFYSTSEKLLLF--ERAYQAPQLVAMSPNQA 370 (733)
T ss_pred eeeecCCCCcceeee-cc-ccCcccceeeccc-cccceEEEEcCCCceeeeecccCcceeh--hhhhcCcceeeeCcccc
Confidence 5443211 10000 00 0011222222222 3455677777888888776443322221 11122456689999999
Q ss_pred EEEEeeCCCeEEEEECCCC
Q 016974 264 RFGTGSDDGTCRLFDIRTG 282 (379)
Q Consensus 264 ~l~s~s~D~~i~iwd~~~~ 282 (379)
++++- +.|.|+++.+.+.
T Consensus 371 ~Ll~e-~~gki~~~~l~Nr 388 (733)
T COG4590 371 YLLSE-DQGKIRLAQLENR 388 (733)
T ss_pred hheee-cCCceEEEEecCC
Confidence 99864 4467888887653
No 454
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=79.54 E-value=5.2 Score=24.24 Aligned_cols=31 Identities=39% Similarity=0.580 Sum_probs=21.6
Q ss_pred chhHHHHHHHHH----HHHHHHHHHHHHHHHHhhc
Q 016974 4 SVSELKERHAAA----IETVNSLRERLKQKRQQLL 34 (379)
Q Consensus 4 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 34 (379)
+++||+++.+.+ ++.+++++++..++|+-++
T Consensus 9 s~~eL~~rl~~LD~~ME~Eieelr~RY~~KRqPIl 43 (49)
T PF11629_consen 9 SYEELQQRLASLDPEMEQEIEELRQRYQAKRQPIL 43 (49)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhccHH
Confidence 578888888776 4456667777777777654
No 455
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=79.50 E-value=4.6 Score=25.43 Aligned_cols=26 Identities=38% Similarity=0.498 Sum_probs=21.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH
Q 016974 4 SVSELKERHAAAIETVNSLRERLKQK 29 (379)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (379)
+|.||.++++.+...++++..++..+
T Consensus 26 sV~El~eRIalLq~EIeRlkAe~~kK 51 (65)
T COG5509 26 SVAELEERIALLQAEIERLKAELAKK 51 (65)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 68899999999999898887776654
No 456
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=78.43 E-value=43 Score=31.86 Aligned_cols=143 Identities=12% Similarity=0.166 Sum_probs=76.8
Q ss_pred CCCeE-EEEcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCC--------CEEEEeeCCCcEEEEEcCCCCCCCCCc
Q 016974 78 ERNRI-VSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTG--------QSVACGGLDSVCSIFNLNSPTDKDGNL 148 (379)
Q Consensus 78 ~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g--------~~l~~~~~d~~i~iw~~~~~~~~~~~~ 148 (379)
+..+| ..|+.-..++-.|++.|+.+.....+... .+.|.|+. +.|+--|..+ |+.+++.... .++
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~s---vFrIDPR~~g-NKi 551 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYS---VFRIDPRARG-NKI 551 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccc---eEEecccccC-Cce
Confidence 44444 35666677888899988888777776553 55677753 3444444444 3333432111 111
Q ss_pred ceeeeecccccceEEEEEec---CCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEe
Q 016974 149 PVSRMLSGHKGYVSCCQYVP---DEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG 225 (379)
Q Consensus 149 ~~~~~~~~h~~~v~~~~~~~---~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg 225 (379)
.+.. . +..++.-.|+. ....+++.||..|-|++||--.......+ ++-...|..+....++..+|+||
T Consensus 552 ~v~e-s---KdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtal-----P~lG~aIk~idvta~Gk~ilaTC 622 (776)
T COG5167 552 KVVE-S---KDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTAL-----PGLGDAIKHIDVTANGKHILATC 622 (776)
T ss_pred eeee-e---hhccccccccccccccCceEEEecCCCceeeehhhcchhhhcC-----cccccceeeeEeecCCcEEEEee
Confidence 1111 1 11111112221 23458999999999999995432222222 34445677777775444344443
Q ss_pred cCCCcEEEEEcc
Q 016974 226 SCDSTARLWDTR 237 (379)
Q Consensus 226 ~~d~~i~vwd~~ 237 (379)
...+.+-|++
T Consensus 623 --k~yllL~d~~ 632 (776)
T COG5167 623 --KNYLLLTDVP 632 (776)
T ss_pred --cceEEEEecc
Confidence 3467777765
No 457
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=77.63 E-value=51 Score=29.23 Aligned_cols=229 Identities=14% Similarity=0.144 Sum_probs=116.4
Q ss_pred EEEEEeeCCCCeEEEEcCCCcEEEEECC------CCce-eeEeecC-----CcceEEEEECCCCC------------EEE
Q 016974 70 VYSLDWTSERNRIVSASQDGRLIVWNAL------TSQK-THAIKLP-----CAWVMTCAFSPTGQ------------SVA 125 (379)
Q Consensus 70 v~~~~~~~~~~~l~s~s~D~~v~iwd~~------~~~~-~~~~~~~-----~~~v~~~~~s~~g~------------~l~ 125 (379)
-+.|+++|.+.+.++...-+...+||.. ..+. .-++... ....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 5789999999888888888999999986 1221 2222211 12345555553322 256
Q ss_pred EeeCCCcEEEEEcCCCCCCCCCcceeeeec-ccccceEE-EEEecC-CCceEE-EeeCCCeEEEeecCCCeeEEEecCcc
Q 016974 126 CGGLDSVCSIFNLNSPTDKDGNLPVSRMLS-GHKGYVSC-CQYVPD-EDTHLI-TSSGDQTCVLWDITTGLRTSVFGGEF 201 (379)
Q Consensus 126 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~-~h~~~v~~-~~~~~~-~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~~~ 201 (379)
.++.||+|.=|.-.-....... ....+. +-.+.|+. +++... ...+|. +==..++|.++|-.-... . ....+
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~--~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~-~-~~g~F 180 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTR--AEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPP-P-LPGSF 180 (336)
T ss_pred EEeCCceEEeecCcCCcccccc--cEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccc-c-CCCCc
Confidence 7789999999984321110000 001111 11244432 333322 122333 333567888887432211 1 11111
Q ss_pred ccC----CccCeEEEEEeCCCCcEEEE-------------ecCCCcEEEEEccCCccceEEEe--cccCCeeEEEEcc--
Q 016974 202 QSG----HTADVLSVSISGSNSRMFVS-------------GSCDSTARLWDTRVASRAVRTFH--GHEGDVNTVKFFP-- 260 (379)
Q Consensus 202 ~~~----h~~~v~~~~~~~~~~~~l~s-------------g~~d~~i~vwd~~~~~~~~~~~~--~h~~~v~~v~~sp-- 260 (379)
... --.+ ..+.- -+++++++ |.--|.|-++|.. ...++.+. +.-..-+.|+..|
T Consensus 181 ~DP~iPagyAP-FnIqn--ig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~--G~l~~r~as~g~LNaPWG~a~APa~ 255 (336)
T TIGR03118 181 IDPALPAGYAP-FNVQN--LGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN--GQLLRRVASSGRLNAPWGLAIAPES 255 (336)
T ss_pred cCCCCCCCCCC-cceEE--ECCeEEEEEEecCCcccccccCCCcceEEEEcCC--CcEEEEeccCCcccCCceeeeChhh
Confidence 100 0000 00000 02223333 3445688898875 34555442 3334567777755
Q ss_pred ----CCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCC-CCCCeEEEEEcc
Q 016974 261 ----DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN-EIPHVTSIAFSI 307 (379)
Q Consensus 261 ----~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~-~~~~v~~~~fs~ 307 (379)
.|.+|+----||+|..||..+++.+-.+....+.. ....+..+.|-.
T Consensus 256 FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 256 FGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred hCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 36667766779999999998887665554332211 112355666644
No 458
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=76.50 E-value=43 Score=27.87 Aligned_cols=181 Identities=14% Similarity=0.117 Sum_probs=81.9
Q ss_pred CceEEEeeC--CCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEec
Q 016974 171 DTHLITSSG--DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG 248 (379)
Q Consensus 171 ~~~l~s~~~--d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~ 248 (379)
+.++.+.+. ...|+.||+.+++................++.+ ...+..-.=.+|.-.++|.++.. .+..+.
T Consensus 56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~-----gd~~y~LTw~egvaf~~d~~t~~-~lg~~~- 128 (262)
T COG3823 56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL-----GDYFYQLTWKEGVAFKYDADTLE-ELGRFS- 128 (262)
T ss_pred CEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec-----cceEEEEEeccceeEEEChHHhh-hhcccc-
Confidence 345566554 346999999987654332111000011111111 11122223345555666655432 222221
Q ss_pred ccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCC
Q 016974 249 HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 328 (379)
Q Consensus 249 h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~ 328 (379)
.++.-+.++ .|+.-|..+....+++.-|.++-.................++-+.| -+|...|--..+..|..-|..+
T Consensus 129 y~GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~t~~I~rI~p~s 205 (262)
T COG3823 129 YEGEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQTTRIARIDPDS 205 (262)
T ss_pred cCCcceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeeeecceEEEcCCC
Confidence 223344444 3555566655555677777655332222111000001111222332 1454444444444455455555
Q ss_pred ceEEEecc--------cccCCccCceeEEEECCCC-CeEEEe
Q 016974 329 AKVVLNLG--------SLQNSHEGRITCLGLSADG-SALCTG 361 (379)
Q Consensus 329 ~~~~~~~~--------~~~~~h~~~v~~~~~s~d~-~~l~s~ 361 (379)
++....+. .....|..-.+.+|+.|++ +++++|
T Consensus 206 GrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 206 GRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred CcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 55443221 1123455667889999887 777776
No 459
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=76.41 E-value=68 Score=30.07 Aligned_cols=274 Identities=12% Similarity=0.109 Sum_probs=127.8
Q ss_pred CCeEEEEcCCCcEEEEECCCCcee--eE-ee-cCCcceEEEE---ECCC-C-CEEEEeeCCCcEEEEEcCCCC--CCCCC
Q 016974 79 RNRIVSASQDGRLIVWNALTSQKT--HA-IK-LPCAWVMTCA---FSPT-G-QSVACGGLDSVCSIFNLNSPT--DKDGN 147 (379)
Q Consensus 79 ~~~l~s~s~D~~v~iwd~~~~~~~--~~-~~-~~~~~v~~~~---~s~~-g-~~l~~~~~d~~i~iw~~~~~~--~~~~~ 147 (379)
...|+.||.+|.++|++...+... .. +. .-..+|..+. |.+. . ..||. =--..+.||.+.... ...+.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence 468999999999999998543311 11 00 1123455554 3222 2 23333 344567777774221 11122
Q ss_pred cceeeeecccccc--eEEEEEec----CCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcE
Q 016974 148 LPVSRMLSGHKGY--VSCCQYVP----DEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRM 221 (379)
Q Consensus 148 ~~~~~~~~~h~~~--v~~~~~~~----~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 221 (379)
......+..|.-. -..+.+-| .+..++..-+.||++.+++-+.-.-...++.... .+ .+.+.+ ..+.
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~ll---Pg---Pl~Y~~-~tDs 188 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLL---PG---PLCYCP-RTDS 188 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCC---Cc---CeEEee-cCCE
Confidence 1112222223211 11111212 1235688899999999999765443333332111 11 233443 3446
Q ss_pred EEEecCCCcEEEEEccCCccc----------------------eEEEecccCC---eeEEEEccCCCEEEEeeCCCeEEE
Q 016974 222 FVSGSCDSTARLWDTRVASRA----------------------VRTFHGHEGD---VNTVKFFPDGNRFGTGSDDGTCRL 276 (379)
Q Consensus 222 l~sg~~d~~i~vwd~~~~~~~----------------------~~~~~~h~~~---v~~v~~sp~g~~l~s~s~D~~i~i 276 (379)
|++++.+..+.-|........ --++.- ... |..+.++.....++.-+. +++.+
T Consensus 189 fvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nl-GE~~l~i~v~~~~~~~~~IvvLge-r~Lf~ 266 (418)
T PF14727_consen 189 FVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNL-GEQALDIQVVRFSSSESDIVVLGE-RSLFC 266 (418)
T ss_pred EEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEEC-CceeEEEEEEEcCCCCceEEEEec-ceEEE
Confidence 777877777777764311000 000000 011 222333322223333332 34555
Q ss_pred EECCCCceeEEEeeccCCCCCCCeEEEEEcc----CC---CEEEEEEecCcEEEEeCCCceEEEecccccCCccCce--e
Q 016974 277 FDIRTGHQLQVYYQQHGENEIPHVTSIAFSI----SG---RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRI--T 347 (379)
Q Consensus 277 wd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~----~g---~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v--~ 347 (379)
.+- +| .+....+-.. .+...+.|.. .+ ..++.++.++++.||.- .+...... -.| .|| .
T Consensus 267 l~~-~G-~l~~~krLd~----~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~L~WsA~---l~~-~PVal~ 334 (418)
T PF14727_consen 267 LKD-NG-SLRFQKRLDY----NPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED--TTLVWSAQ---LPH-VPVALS 334 (418)
T ss_pred EcC-CC-eEEEEEecCC----ceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC--CeEEEecC---CCC-CCEEEE
Confidence 543 23 2222222111 1112222222 22 25888999999999963 23333221 112 232 2
Q ss_pred EEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 348 CLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 348 ~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
-..|..-...|++-+.||.+.+--++.
T Consensus 335 v~~~~~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 335 VANFNGLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred ecccCCCCceEEEEcCCCcEEEEEeCC
Confidence 222333456788899999998877664
No 460
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=75.36 E-value=53 Score=28.34 Aligned_cols=149 Identities=16% Similarity=0.128 Sum_probs=78.6
Q ss_pred cEEEEEeeCCCCeEEEEc---CCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeCCCcEEEEEc-CCCCCC
Q 016974 69 KVYSLDWTSERNRIVSAS---QDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNL-NSPTDK 144 (379)
Q Consensus 69 ~v~~~~~~~~~~~l~s~s---~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~-~~~~~~ 144 (379)
.+.+.+++++++.+|... ....++++... ....... ....+..-.|+++|...+....+...+++.. ....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~-- 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT-- 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCc--
Confidence 477889999998876655 33345555432 2222221 2234566678999888777777777777641 1111
Q ss_pred CCCcceee-eecccccceEEEEEecCCCceEEEe--eCCCeEEEeecC---CC-eeEEEecCccccCCccCeEEEEEeCC
Q 016974 145 DGNLPVSR-MLSGHKGYVSCCQYVPDEDTHLITS--SGDQTCVLWDIT---TG-LRTSVFGGEFQSGHTADVLSVSISGS 217 (379)
Q Consensus 145 ~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~l~s~--~~d~~i~~wd~~---~~-~~~~~~~~~~~~~h~~~v~~~~~~~~ 217 (379)
..... ....-.+.|..+.++|++....+.. ..++.|.+=-+. .+ .................+.++.|.+.
T Consensus 100 ---~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~ 176 (253)
T PF10647_consen 100 ---GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD 176 (253)
T ss_pred ---ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC
Confidence 10111 0111112799999999987654433 334666555432 12 11110001111223457889999974
Q ss_pred CCcEEEEec
Q 016974 218 NSRMFVSGS 226 (379)
Q Consensus 218 ~~~~l~sg~ 226 (379)
. .+++.+.
T Consensus 177 ~-~L~V~~~ 184 (253)
T PF10647_consen 177 S-TLVVLGR 184 (253)
T ss_pred C-EEEEEeC
Confidence 4 4544443
No 461
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=74.90 E-value=15 Score=30.57 Aligned_cols=47 Identities=15% Similarity=0.207 Sum_probs=33.2
Q ss_pred EEEecCCCcEEEEEccCCc-cceEEEecccCCeeEEEEccCCCEEEEee
Q 016974 222 FVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPDGNRFGTGS 269 (379)
Q Consensus 222 l~sg~~d~~i~vwd~~~~~-~~~~~~~~h~~~v~~v~~sp~g~~l~s~s 269 (379)
|+.+.....|.+|++.... +....|. --+.|..+.++..|+||+|-=
T Consensus 31 Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE 78 (215)
T PF14761_consen 31 LFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLE 78 (215)
T ss_pred EEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEE
Confidence 3333555679999988332 3444454 347899999999999999863
No 462
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=73.86 E-value=57 Score=27.99 Aligned_cols=118 Identities=20% Similarity=0.251 Sum_probs=58.5
Q ss_pred EEEccCCCEEEEeeC-C--CeEEEEECCCCceeEEEeeccC-CCCCCCeEEEEEccCCCEEEEEEecC-cEEEEeCCCc-
Q 016974 256 VKFFPDGNRFGTGSD-D--GTCRLFDIRTGHQLQVYYQQHG-ENEIPHVTSIAFSISGRLLFAGYSNG-DCYVWDTLLA- 329 (379)
Q Consensus 256 v~~sp~g~~l~s~s~-D--~~i~iwd~~~~~~~~~~~~~~~-~~~~~~v~~~~fs~~g~~l~sg~~dg-~i~iwd~~~~- 329 (379)
-++.|||+.|.+|+. | ..+++++.-....-..+..... -...-+--.+..=|||+.|+.|+.+. +..+|.....
T Consensus 72 g~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~ 151 (243)
T PF07250_consen 72 GAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPG 151 (243)
T ss_pred cCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCccCC
Confidence 356789999999975 3 3478887644110001111000 00011112344457999998887765 4566664211
Q ss_pred -eEE-Ee-cccccCCccCce-eEEEECCCCCeEEEeeCCCcEEEEecC
Q 016974 330 -KVV-LN-LGSLQNSHEGRI-TCLGLSADGSALCTGSWDTNLKIWAFG 373 (379)
Q Consensus 330 -~~~-~~-~~~~~~~h~~~v-~~~~~s~d~~~l~s~s~D~~i~vw~~~ 373 (379)
... .. +........... --+...|||+.++.+..+..|.=|..+
T Consensus 152 ~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~d~~~n 199 (243)
T PF07250_consen 152 PGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIYDYKTN 199 (243)
T ss_pred CCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEEeCCCC
Confidence 111 11 110000001111 134456999999988877665544433
No 463
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=73.75 E-value=74 Score=29.23 Aligned_cols=20 Identities=20% Similarity=0.091 Sum_probs=15.0
Q ss_pred CeeEEEEccCCCEEEEeeCC
Q 016974 252 DVNTVKFFPDGNRFGTGSDD 271 (379)
Q Consensus 252 ~v~~v~~sp~g~~l~s~s~D 271 (379)
..+.++|+|+|+.+++-..+
T Consensus 185 np~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 185 NPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CCccceECCCCCEEEEccCC
Confidence 35789999999988765433
No 464
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.43 E-value=1.3e+02 Score=31.93 Aligned_cols=29 Identities=7% Similarity=0.245 Sum_probs=24.2
Q ss_pred cEEEEEeeCCCCeEEEEcCCCcEEEEECC
Q 016974 69 KVYSLDWTSERNRIVSASQDGRLIVWNAL 97 (379)
Q Consensus 69 ~v~~~~~~~~~~~l~s~s~D~~v~iwd~~ 97 (379)
.-..++|+|...++|-|..+|.|+++-..
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQP 65 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEeccc
Confidence 34567889999999999999999999643
No 465
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=72.87 E-value=9.5 Score=20.56 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=20.4
Q ss_pred CeEEEEcCCCcEEEEECCCCceeeE
Q 016974 80 NRIVSASQDGRLIVWNALTSQKTHA 104 (379)
Q Consensus 80 ~~l~s~s~D~~v~iwd~~~~~~~~~ 104 (379)
..++.++.+|.+...|..+|+....
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEE
Confidence 3677889999999999988886654
No 466
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=71.51 E-value=33 Score=24.19 Aligned_cols=43 Identities=14% Similarity=0.019 Sum_probs=26.1
Q ss_pred EecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEe
Q 016974 224 SGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG 268 (379)
Q Consensus 224 sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~ 268 (379)
.+..+|.+..||..+. ....+...-.--+.|+++||+..++.+
T Consensus 32 e~~~~GRll~ydp~t~--~~~vl~~~L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 32 EGRPTGRLLRYDPSTK--ETTVLLDGLYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp HT---EEEEEEETTTT--EEEEEEEEESSEEEEEE-TTSSEEEEE
T ss_pred cCCCCcCEEEEECCCC--eEEEehhCCCccCeEEEcCCCCEEEEE
Confidence 3556677888887654 233343334567899999999977655
No 467
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=71.27 E-value=17 Score=20.78 Aligned_cols=30 Identities=20% Similarity=0.338 Sum_probs=21.5
Q ss_pred cCCCEEEEee-CCCeEEEEECCCCceeEEEe
Q 016974 260 PDGNRFGTGS-DDGTCRLFDIRTGHQLQVYY 289 (379)
Q Consensus 260 p~g~~l~s~s-~D~~i~iwd~~~~~~~~~~~ 289 (379)
|++++|.++. .+++|.++|..+++.+..+.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 5677665544 68899999998877665543
No 468
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=70.35 E-value=1.4e+02 Score=31.02 Aligned_cols=102 Identities=13% Similarity=0.068 Sum_probs=55.4
Q ss_pred EEEecCCCcEEEEEccCCccceEEEe--cccCCeeEEEEccCC------CEEEEeeCCCeEEEE-ECCCCceeEEEeecc
Q 016974 222 FVSGSCDSTARLWDTRVASRAVRTFH--GHEGDVNTVKFFPDG------NRFGTGSDDGTCRLF-DIRTGHQLQVYYQQH 292 (379)
Q Consensus 222 l~sg~~d~~i~vwd~~~~~~~~~~~~--~h~~~v~~v~~sp~g------~~l~s~s~D~~i~iw-d~~~~~~~~~~~~~~ 292 (379)
++.++.++.+...++.... ++... .-+..|.|+.++|-| +.++.|..+..+.+- -+.....+.. .+..
T Consensus 502 VvvA~~~~~l~y~~i~~~~--l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~-~~l~ 578 (1096)
T KOG1897|consen 502 VVVAGGGLALFYLEIEDGG--LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITH-EQLS 578 (1096)
T ss_pred EEEecCccEEEEEEeeccc--eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeee-eccC
Confidence 4444545555555554332 22111 124578999999742 267888776654443 2333222222 1111
Q ss_pred CCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeC
Q 016974 293 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 326 (379)
Q Consensus 293 ~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~ 326 (379)
.+.-...|.-..|-.|+.||.++..||.+..|-+
T Consensus 579 ~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~ 612 (1096)
T KOG1897|consen 579 GEIIPRSILLTTFEGDIHYLLVALGDGALLYFVL 612 (1096)
T ss_pred CCccchheeeEEeeccceEEEEEcCCceEEEEEE
Confidence 1111123555667777899999999998876643
No 469
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=69.65 E-value=93 Score=28.69 Aligned_cols=108 Identities=16% Similarity=0.115 Sum_probs=46.4
Q ss_pred cccCCeeEEEEccCCCEEEEeeCCC-----eEEEEECCC-CceeEEEeeccCCCCCCCeEEEEEccCCCEEEE-EE-e--
Q 016974 248 GHEGDVNTVKFFPDGNRFGTGSDDG-----TCRLFDIRT-GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA-GY-S-- 317 (379)
Q Consensus 248 ~h~~~v~~v~~sp~g~~l~s~s~D~-----~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~s-g~-~-- 317 (379)
.-+..+.-+.|+|.-..+++-|..| .-|||-+.+ +........ +. ....+.-=-|+|||..|.- +. .
T Consensus 185 ~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~-~~--~~e~~gHEfw~~DG~~i~y~~~~~~~ 261 (386)
T PF14583_consen 185 EDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHR-RM--EGESVGHEFWVPDGSTIWYDSYTPGG 261 (386)
T ss_dssp EESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS------TTEEEEEEEE-TTSS-EEEEEEETTT
T ss_pred ecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeec-CC--CCcccccccccCCCCEEEEEeecCCC
Confidence 3456778899999554555444332 235665543 222222211 11 1223444457899986543 22 2
Q ss_pred -cCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCC
Q 016974 318 -NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD 364 (379)
Q Consensus 318 -dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D 364 (379)
+..|.-+|..+++..... .......+..++||+++|-=+.|
T Consensus 262 ~~~~i~~~d~~t~~~~~~~------~~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 262 QDFWIAGYDPDTGERRRLM------EMPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp --EEEEEE-TTT--EEEEE------EE-SEEEEEE-TTSSEEEEEE--
T ss_pred CceEEEeeCCCCCCceEEE------eCCceeeeEEcCCCCEEEecCCC
Confidence 224555676665443211 11123345557899988753333
No 470
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.53 E-value=81 Score=33.70 Aligned_cols=148 Identities=14% Similarity=0.161 Sum_probs=76.6
Q ss_pred cCCCcEEEEECCCCceeeEeecCCcceEEEE--------ECCCCCEEEEeeCCCcEEEEEcCCCCCCCCCccee--eeec
Q 016974 86 SQDGRLIVWNALTSQKTHAIKLPCAWVMTCA--------FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVS--RMLS 155 (379)
Q Consensus 86 s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~--------~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~--~~~~ 155 (379)
+.|..+.+|+.+++...+.+..-...|..+. |-|.=+++.....--.+.|+-+.-.....+..... ..+.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 4788999999998776666654444343332 33333444444444445555543221111111111 1111
Q ss_pred ccccceEEEEEecCCCceEEEeeCCCeEEEeec----CCC---eeEEEe-----------cC--ccccCCccCeEEEEEe
Q 016974 156 GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI----TTG---LRTSVF-----------GG--EFQSGHTADVLSVSIS 215 (379)
Q Consensus 156 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~----~~~---~~~~~~-----------~~--~~~~~h~~~v~~~~~~ 215 (379)
...-.|.++... +++..+ -++.|| .+|.+ ..+ .+...+ +. .+...+.++|..+.+.
T Consensus 176 ~dg~~V~~I~~t-~nGRIF-~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID 251 (1311)
T KOG1900|consen 176 VDGVSVNCITYT-ENGRIF-FAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID 251 (1311)
T ss_pred cCCceEEEEEec-cCCcEE-EeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec
Confidence 123356777744 344444 455666 45543 222 100000 00 0112456788888887
Q ss_pred CCCCcEEEEecCCCcEEEEEccC
Q 016974 216 GSNSRMFVSGSCDSTARLWDTRV 238 (379)
Q Consensus 216 ~~~~~~l~sg~~d~~i~vwd~~~ 238 (379)
.+ .+++.+=+..++|..||+..
T Consensus 252 ~S-R~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 252 NS-RNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cc-cceeeeeccCceEEEEEccC
Confidence 53 45777888899999999875
No 471
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=68.57 E-value=29 Score=24.25 Aligned_cols=29 Identities=14% Similarity=0.180 Sum_probs=22.8
Q ss_pred eeEEEECCCCCeEEEeeC-CCcEEEEecCc
Q 016974 346 ITCLGLSADGSALCTGSW-DTNLKIWAFGG 374 (379)
Q Consensus 346 v~~~~~s~d~~~l~s~s~-D~~i~vw~~~~ 374 (379)
-+.|.++|++++|..++. .+.|++|....
T Consensus 56 aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 56 ANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 467889999998886655 68899998653
No 472
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=68.13 E-value=54 Score=26.34 Aligned_cols=30 Identities=13% Similarity=0.180 Sum_probs=23.9
Q ss_pred ceEEEEEecCC-----CceEEEeeCCCeEEEeecC
Q 016974 160 YVSCCQYVPDE-----DTHLITSSGDQTCVLWDIT 189 (379)
Q Consensus 160 ~v~~~~~~~~~-----~~~l~s~~~d~~i~~wd~~ 189 (379)
.+..++|+|.+ ..+|+.-+.++.|.+|...
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 67889999843 3568888999999999754
No 473
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=68.04 E-value=1 Score=41.75 Aligned_cols=139 Identities=12% Similarity=0.194 Sum_probs=84.1
Q ss_pred EEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccce
Q 016974 164 CQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 243 (379)
Q Consensus 164 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~ 243 (379)
..|-|.+.+ ++.++.+..+..||-....... ..-......+++.-....+++.+-..+.+.+||+.......
T Consensus 40 ~~w~~e~~n-lavaca~tiv~~YD~agq~~le-------~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq 111 (615)
T KOG2247|consen 40 HRWRPEGHN-LAVACANTIVIYYDKAGQVILE-------LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ 111 (615)
T ss_pred eeEecCCCc-eehhhhhhHHHhhhhhcceecc-------cCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH
Confidence 356666554 8888888899999865432211 11223445566665445556667778899999987432211
Q ss_pred EEEec-ccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEec
Q 016974 244 RTFHG-HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN 318 (379)
Q Consensus 244 ~~~~~-h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~d 318 (379)
-.+.+ |.... +.|++.+..++.+-..+.+.|++..+.+.+...- .+...++++++.+.+..+ .++.|
T Consensus 112 LE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~G-----kh~RRgtq~av~lEd~vi-l~dcd 179 (615)
T KOG2247|consen 112 LESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMG-----KHQRRGTQIAVTLEDYVI-LCDCD 179 (615)
T ss_pred HhccCcchHHH--HhhccCCccccccccccceEEEeccchhhhhhhc-----ccccceeEEEecccceee-ecCcH
Confidence 11111 22222 7888888888888888999999987765443321 123346778887766443 34333
No 474
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=67.76 E-value=20 Score=20.30 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=22.6
Q ss_pred eEEEEcCCCcEEEEECCCCceeeEeecC
Q 016974 81 RIVSASQDGRLIVWNALTSQKTHAIKLP 108 (379)
Q Consensus 81 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 108 (379)
.++.++.||.|.-.|..+|+.+..++..
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence 4566799999999999999988776543
No 475
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=65.49 E-value=88 Score=26.85 Aligned_cols=50 Identities=20% Similarity=0.246 Sum_probs=27.6
Q ss_pred EEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEeeC-C--CcEEEEEcCC
Q 016974 91 LIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGL-D--SVCSIFNLNS 140 (379)
Q Consensus 91 v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-d--~~i~iw~~~~ 140 (379)
-.+||..+++...---....+-.+-.|-+||+.+.+||. + ..+++++...
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~ 100 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCT 100 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCC
Confidence 456777765432211111122222357899999999876 2 4477777543
No 476
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=65.37 E-value=18 Score=18.91 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=14.6
Q ss_pred eeEEEEccCCCEEEEeeCCCeEEEE
Q 016974 253 VNTVKFFPDGNRFGTGSDDGTCRLF 277 (379)
Q Consensus 253 v~~v~~sp~g~~l~s~s~D~~i~iw 277 (379)
...++++++|+.+++=+....|++|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 3456666666666665555555543
No 477
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=64.39 E-value=14 Score=36.61 Aligned_cols=66 Identities=20% Similarity=0.378 Sum_probs=42.3
Q ss_pred CeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEe
Q 016974 252 DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD 325 (379)
Q Consensus 252 ~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd 325 (379)
.++++.-+|.|+.+++++.||+|++|+.....+.+.... ..+-..+.|...| |++..+|..+.-|.
T Consensus 16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~------~~p~~nlv~tnhg--l~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEE------AKPKENLVFTNHG--LVTATSDRRALAWK 81 (1636)
T ss_pred eeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhh------cCCccceeeeccc--eEEEeccchhheee
Confidence 467788889999999999999999999765433211111 1122345665555 44555566666664
No 478
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=64.06 E-value=20 Score=18.86 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=19.6
Q ss_pred ceeEEEECCCCCeEEEeeCCCcEEEEe
Q 016974 345 RITCLGLSADGSALCTGSWDTNLKIWA 371 (379)
Q Consensus 345 ~v~~~~~s~d~~~l~s~s~D~~i~vw~ 371 (379)
.|.+++.++ ++++.+..-+.+|+|.
T Consensus 3 ~i~aia~g~--~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGD--SWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccC--CEEEEEeCCCeEEecC
Confidence 577888665 5888888889999874
No 479
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=63.33 E-value=1.9e+02 Score=29.83 Aligned_cols=130 Identities=12% Similarity=0.170 Sum_probs=72.4
Q ss_pred ceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCC
Q 016974 160 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 239 (379)
Q Consensus 160 ~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~ 239 (379)
+...++|+|.....||.....|...+||+...... + ...+-+.....|.| +.|...
T Consensus 147 ~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~----------~------------~~~~~~~~~~~gsi-~~d~~e- 202 (765)
T PF10214_consen 147 PHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKR----------K------------SSNLRLSRNISGSI-IFDPEE- 202 (765)
T ss_pred ccceEEeccCccceEEEEeccCcEEEEEecccccc----------C------------CcceeeccCCCccc-cCCCcc-
Confidence 44578899887778999999999999998221110 0 00111222223444 223211
Q ss_pred ccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCC-EEEEEEec
Q 016974 240 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSN 318 (379)
Q Consensus 240 ~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~-~l~sg~~d 318 (379)
+ ..-..+.|.++.+.|+.++. ..+.++|+.+......+.. .+.-..|..+.-+|... +++.- ..
T Consensus 203 ---------~-s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~~~~~~l~~---~~~~~~IlDv~~~~~~~~~~FiL-Ts 267 (765)
T PF10214_consen 203 ---------L-SNWKRILWVSDSNRLLVCNR-SKLMLIDFESNWQTEYLVT---AKTWSWILDVKRSPDNPSHVFIL-TS 267 (765)
T ss_pred ---------c-CcceeeEecCCCCEEEEEcC-CceEEEECCCCCccchhcc---CCChhheeeEEecCCccceEEEE-ec
Confidence 1 33456788888777777654 5688899987765432111 12234577777777622 22222 22
Q ss_pred CcEEEEeCCC
Q 016974 319 GDCYVWDTLL 328 (379)
Q Consensus 319 g~i~iwd~~~ 328 (379)
..|...|+..
T Consensus 268 ~eiiw~~~~~ 277 (765)
T PF10214_consen 268 KEIIWLDVKS 277 (765)
T ss_pred CeEEEEEccC
Confidence 4566666554
No 480
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=61.77 E-value=54 Score=23.10 Aligned_cols=42 Identities=21% Similarity=0.252 Sum_probs=26.2
Q ss_pred EcCCCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEe
Q 016974 85 ASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACG 127 (379)
Q Consensus 85 ~s~D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 127 (379)
+..+|.+..||..+++...-+.. ......+++++|+..++.+
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEE
Confidence 34567888889887764333332 3467889999999976654
No 481
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=61.25 E-value=44 Score=29.70 Aligned_cols=74 Identities=20% Similarity=0.264 Sum_probs=51.4
Q ss_pred CeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccC-ceeEEEECCCCCeEEEeeCCCcEEEEec
Q 016974 299 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEG-RITCLGLSADGSALCTGSWDTNLKIWAF 372 (379)
Q Consensus 299 ~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~-~v~~~~~s~d~~~l~s~s~D~~i~vw~~ 372 (379)
.++++...++|.+|+|.-.-.+|++.|..+++++..++.....-.. +-...++-.|-.++-.+..+++|.|||=
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 4788898999999999988889999999899998887532110000 1112344455666666677888888875
No 482
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=60.04 E-value=43 Score=29.81 Aligned_cols=73 Identities=18% Similarity=0.216 Sum_probs=43.2
Q ss_pred eeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEe
Q 016974 253 VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD 325 (379)
Q Consensus 253 v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd 325 (379)
|++|...++|++|+|.=.-.+|.+.|.++|+.+-.+-.+....-...-...++-++-+++-.+..++.|.+||
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFD 218 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFD 218 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEc
Confidence 7788888999999998888889999988887665442220000000011123333334444445566666666
No 483
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=59.91 E-value=1.2e+02 Score=26.42 Aligned_cols=184 Identities=13% Similarity=0.098 Sum_probs=93.4
Q ss_pred EEEEEeeCCCCeEEEEcCCC--cEEEEECCCCceeeEeecCCc-ceEEEEECCCCCEEEEeeCCCcEEEEEcCCCCCCCC
Q 016974 70 VYSLDWTSERNRIVSASQDG--RLIVWNALTSQKTHAIKLPCA-WVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDG 146 (379)
Q Consensus 70 v~~~~~~~~~~~l~s~s~D~--~v~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~ 146 (379)
.-.+.|.+++.++-|.+.-| .|+.+|..+++.......+.. +--.++.. +++...-.-.++...+||.++-.
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~---- 121 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLK---- 121 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTE----
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccce----
Confidence 34678877888888887766 799999999998877766532 22223322 33455556678888899876421
Q ss_pred CcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCCCeeEEEecCccccCCccCeEEEEEeCCCCcEEEEec
Q 016974 147 NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS 226 (379)
Q Consensus 147 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~ 226 (379)
....+. ..+.=..+. .++ ..|+.......+.++|..+-.....+........-..++.+.+- ++.++|--=
T Consensus 122 ---~~~~~~-y~~EGWGLt--~dg-~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i--~G~IyANVW 192 (264)
T PF05096_consen 122 ---KIGTFP-YPGEGWGLT--SDG-KRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI--NGKIYANVW 192 (264)
T ss_dssp ---EEEEEE--SSS--EEE--ECS-SCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--TTEEEEEET
T ss_pred ---EEEEEe-cCCcceEEE--cCC-CEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--cCEEEEEeC
Confidence 222221 112223333 244 45666666788999998765444433322111111234444443 334443333
Q ss_pred CCCcEEEEEccCCccceEEEe---------------cccCCeeEEEEccCCCEE-EEe
Q 016974 227 CDSTARLWDTRVASRAVRTFH---------------GHEGDVNTVKFFPDGNRF-GTG 268 (379)
Q Consensus 227 ~d~~i~vwd~~~~~~~~~~~~---------------~h~~~v~~v~~sp~g~~l-~s~ 268 (379)
....|-..|..++ .+...+. ....-.+.+|+.|..+.| +||
T Consensus 193 ~td~I~~Idp~tG-~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 193 QTDRIVRIDPETG-KVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TSSEEEEEETTT--BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CCCeEEEEeCCCC-eEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 3333444444433 2222211 012347899999876654 444
No 484
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.38 E-value=2.1e+02 Score=28.87 Aligned_cols=88 Identities=11% Similarity=0.202 Sum_probs=47.5
Q ss_pred CcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccC
Q 016974 229 STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS 308 (379)
Q Consensus 229 ~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~ 308 (379)
-.|+|+++. ++.+....-..+.+-.+.|+.+. .|++...||++.+|++.. +.+..+.. ..+.....|.-+.|..+
T Consensus 64 ~~I~If~~s--G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~g-e~ie~~sv-g~e~~~~~I~ec~~f~~ 138 (829)
T KOG2280|consen 64 PYIRIFNIS--GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLG-EFIESNSV-GFESQMSDIVECRFFHN 138 (829)
T ss_pred eeEEEEecc--ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecch-hhhccccc-ccccccCceeEEEEecC
Confidence 357777754 23333222223367789998776 466778999999999863 33322211 11222234555566556
Q ss_pred CCEEEEEEecCcEEE
Q 016974 309 GRLLFAGYSNGDCYV 323 (379)
Q Consensus 309 g~~l~sg~~dg~i~i 323 (379)
|-.+. ..+|.+.+
T Consensus 139 GVavl--t~~g~v~~ 151 (829)
T KOG2280|consen 139 GVAVL--TVSGQVIL 151 (829)
T ss_pred ceEEE--ecCCcEEE
Confidence 63333 33444443
No 485
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=56.60 E-value=1.4e+02 Score=26.29 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=34.2
Q ss_pred cEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEee------CCCcEEEEEcCC
Q 016974 90 RLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGG------LDSVCSIFNLNS 140 (379)
Q Consensus 90 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~------~d~~i~iw~~~~ 140 (379)
.|++||..+.+-...-..-.+.|..+.|..+.+.++.|. ....+..||+..
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~ 73 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKN 73 (281)
T ss_pred EEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCC
Confidence 588999765543322223446789999987777777764 355677888765
No 486
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=54.01 E-value=1.8e+02 Score=26.71 Aligned_cols=51 Identities=20% Similarity=0.170 Sum_probs=28.3
Q ss_pred EecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeC--CCcEEEEe
Q 016974 316 YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW--DTNLKIWA 371 (379)
Q Consensus 316 ~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~--D~~i~vw~ 371 (379)
..+|.+.-||..+... ..+ ..+ -...+.++.|||+.+++.+-. -..-|+|-
T Consensus 196 ~~~GRl~~YD~~tK~~-~VL---ld~-L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi 248 (376)
T KOG1520|consen 196 DPTGRLFRYDPSTKVT-KVL---LDG-LYFPNGLALSPDGSFVLVAETTTARIKRYWI 248 (376)
T ss_pred CCccceEEecCcccch-hhh---hhc-ccccccccCCCCCCEEEEEeeccceeeeeEe
Confidence 3556777777543222 111 111 123467899999999887533 23446664
No 487
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=53.38 E-value=1.7e+02 Score=26.17 Aligned_cols=156 Identities=13% Similarity=0.102 Sum_probs=73.8
Q ss_pred ccCeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCcee
Q 016974 206 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL 285 (379)
Q Consensus 206 ~~~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~ 285 (379)
...+..+...+ ++.++++++.-....-||-... .-...-..-...|..+.|.|++...+. ...|.|++=+.. ...
T Consensus 144 ~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~-~w~~~~r~~~~riq~~gf~~~~~lw~~-~~Gg~~~~s~~~--~~~ 218 (302)
T PF14870_consen 144 SGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQT-TWQPHNRNSSRRIQSMGFSPDGNLWML-ARGGQIQFSDDP--DDG 218 (302)
T ss_dssp ---EEEEEE-T-TS-EEEEETTSSEEEEE-TT-S-S-EEEE--SSS-EEEEEE-TTS-EEEE-ETTTEEEEEE-T--TEE
T ss_pred cceeEeEEECC-CCcEEEEECcccEEEEecCCCc-cceEEccCccceehhceecCCCCEEEE-eCCcEEEEccCC--CCc
Confidence 34566666664 7788888777666778874321 011111223568999999999876664 488888887721 122
Q ss_pred EEEeeccCC--CCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeC
Q 016974 286 QVYYQQHGE--NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 363 (379)
Q Consensus 286 ~~~~~~~~~--~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~ 363 (379)
..+...... ...-.+..++|.++++..++|+ .|.+.+ ....++--...... ..-...++.+.|.++.+-+| -+.
T Consensus 219 ~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~~-S~DgGktW~~~~~~-~~~~~n~~~i~f~~~~~gf~-lG~ 294 (302)
T PF14870_consen 219 ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLLV-STDGGKTWQKDRVG-ENVPSNLYRIVFVNPDKGFV-LGQ 294 (302)
T ss_dssp EEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EEE-ESSTTSS-EE-GGG-TTSSS---EEEEEETTEEEE-E-S
T ss_pred cccccccCCcccCceeeEEEEecCCCCEEEEeC-CccEEE-eCCCCccceECccc-cCCCCceEEEEEcCCCceEE-ECC
Confidence 233221111 1122378999999987777654 444443 12223221111111 12234678888876555554 456
Q ss_pred CCcEEEE
Q 016974 364 DTNLKIW 370 (379)
Q Consensus 364 D~~i~vw 370 (379)
||.|.=|
T Consensus 295 ~G~ll~~ 301 (302)
T PF14870_consen 295 DGVLLRY 301 (302)
T ss_dssp TTEEEEE
T ss_pred CcEEEEe
Confidence 7766543
No 488
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=53.18 E-value=45 Score=21.04 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=12.2
Q ss_pred eeEEEECCCCCeEEEeeC
Q 016974 346 ITCLGLSADGSALCTGSW 363 (379)
Q Consensus 346 v~~~~~s~d~~~l~s~s~ 363 (379)
+..++.-|||++|+.|..
T Consensus 3 ~~~~~~q~DGkIlv~G~~ 20 (55)
T TIGR02608 3 AYAVAVQSDGKILVAGYV 20 (55)
T ss_pred eEEEEECCCCcEEEEEEe
Confidence 456677777777777743
No 489
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=53.15 E-value=1.2e+02 Score=28.45 Aligned_cols=159 Identities=13% Similarity=0.127 Sum_probs=78.3
Q ss_pred CeEEEEEeCCCCcEEEEecCCCcEEEEEccCCccceEEEecc-cC----Cee-EEEEccCCCEEEEeeCCCeEEEE-ECC
Q 016974 208 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH-EG----DVN-TVKFFPDGNRFGTGSDDGTCRLF-DIR 280 (379)
Q Consensus 208 ~v~~~~~~~~~~~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h-~~----~v~-~v~~sp~g~~l~s~s~D~~i~iw-d~~ 280 (379)
.+..+-..| +++.+..-+. ..+.++++.+..-..+.+... .+ .|+ .+..-..|..+..++.||.|.-| |++
T Consensus 222 ~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr 299 (733)
T COG4590 222 DVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVR 299 (733)
T ss_pred chHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeee
Confidence 344444454 5554443322 567788765322111111110 11 122 22222356678888999988766 665
Q ss_pred CCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEE
Q 016974 281 TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCT 360 (379)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s 360 (379)
.+............-...++.-+.=..+.+-+++-+.+|++.++-....+....- .--..+.-+++||.+.+|++
T Consensus 300 ~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~-----~~~~~~~~~~~Sp~~~~Ll~ 374 (733)
T COG4590 300 RDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFE-----RAYQAPQLVAMSPNQAYLLS 374 (733)
T ss_pred cCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehh-----hhhcCcceeeeCcccchhee
Confidence 5432111000000000112333322233455667778888888765444433211 11224566789999999885
Q ss_pred eeCCCcEEEEecCc
Q 016974 361 GSWDTNLKIWAFGG 374 (379)
Q Consensus 361 ~s~D~~i~vw~~~~ 374 (379)
- ..|.|+++.++-
T Consensus 375 e-~~gki~~~~l~N 387 (733)
T COG4590 375 E-DQGKIRLAQLEN 387 (733)
T ss_pred e-cCCceEEEEecC
Confidence 3 446788887653
No 490
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=52.97 E-value=57 Score=20.70 Aligned_cols=33 Identities=27% Similarity=0.222 Sum_probs=25.9
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016974 1 MSSSVSELKERHAAAIETVNSLRERLKQKRQQL 33 (379)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (379)
+.|-|+.|++++.++++...+++.+-.-.|+..
T Consensus 12 VrEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 12 VREEVEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp -TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 357789999999999998888887777766653
No 491
>PRK13615 lipoprotein LpqB; Provisional
Probab=52.89 E-value=2.2e+02 Score=28.02 Aligned_cols=106 Identities=11% Similarity=0.093 Sum_probs=60.3
Q ss_pred eEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEEeCCC-ceEE
Q 016974 254 NTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL-AKVV 332 (379)
Q Consensus 254 ~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~-~~~~ 332 (379)
.+++.++++..+|....++.+.++.... .... +.. ...++.-.|+++| ++-+.......++..... +...
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~~-~~~~-~~~------~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~ 407 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGDR-DAVL-LDT------RPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGH 407 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCCC-ccee-ecc------CCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceE
Confidence 6789999999998888788888876542 1111 111 1124555677777 555544333344433222 2221
Q ss_pred EecccccCCccCceeEEEECCCCCeEEEeeC---CCcEEEE
Q 016974 333 LNLGSLQNSHEGRITCLGLSADGSALCTGSW---DTNLKIW 370 (379)
Q Consensus 333 ~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~---D~~i~vw 370 (379)
....- -.-.+.|..+..|+||..+|.-.. .+.|+|=
T Consensus 408 -~v~v~-~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va 446 (557)
T PRK13615 408 -PVAVS-WTATGRVVSLEVARDGARVLVQLETGAGPQLLVA 446 (557)
T ss_pred -Eeecc-ccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEE
Confidence 11111 112358999999999987765432 3456553
No 492
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=51.68 E-value=43 Score=33.44 Aligned_cols=70 Identities=14% Similarity=0.166 Sum_probs=44.0
Q ss_pred CCeEEEEEccCCCEEEEEEecCcEEEEeCCCceEEEecccccCCccCceeEEEECCCCCeEEEeeCCCcEEEEecCc
Q 016974 298 PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 374 (379)
Q Consensus 298 ~~v~~~~fs~~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~s~s~D~~i~vw~~~~ 374 (379)
..++++.-.|.|+-++.++.||.|.+|+....+.-..+. -..|-..+.|... -|+++..|..+.-|.-++
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-----~~~p~~nlv~tnh--gl~~~tsdrr~la~~~dg 84 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-----EAKPKENLVFTNH--GLVTATSDRRALAWKEDG 84 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-----hcCCccceeeecc--ceEEEeccchhheeeccC
Confidence 347788888999999999999999999865433211110 1112233445433 355566677777776554
No 493
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=51.46 E-value=2.2e+02 Score=27.08 Aligned_cols=59 Identities=17% Similarity=0.236 Sum_probs=38.8
Q ss_pred cccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeE--ee-----cCCcceEEEEECCCC
Q 016974 63 LQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHA--IK-----LPCAWVMTCAFSPTG 121 (379)
Q Consensus 63 l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~--~~-----~~~~~v~~~~~s~~g 121 (379)
+...-..-+.|+|.||+++|++--..|.|++++..++..... +. ........++|+|+-
T Consensus 25 va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 25 LLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 333344578999999998887665579999998654432211 11 123557889999873
No 494
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=51.14 E-value=92 Score=30.72 Aligned_cols=241 Identities=15% Similarity=0.096 Sum_probs=0.0
Q ss_pred eeccccccccEEEEEeeCCCCeEEEEcCCCcEEEEECCCCceeeEeecCC------------cceEEEEECCCCCEEEEe
Q 016974 60 CRTLQGHAGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPC------------AWVMTCAFSPTGQSVACG 127 (379)
Q Consensus 60 ~~~l~gH~~~v~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~------------~~v~~~~~s~~g~~l~~~ 127 (379)
++.|+.|..++..++|.+.+..+++++..| .-|.+...-..+.+..... .++..++|+...++++.+
T Consensus 308 i~QfkAhkspiSaLcfdqsgsllViasi~g-~nVnvfRimet~~t~~~~~qs~~~s~ra~t~aviqdicfs~~s~~r~~g 386 (788)
T KOG2109|consen 308 IRQFKAHKSPISALCFDQSGSLLVIASITG-RNVNVFRIMETVCTVNVSDQSLVVSPRANTAAVIQDICFSEVSTIRTAG 386 (788)
T ss_pred hhheeeecCcccccccccCceEEEEEeecc-ceeeeEEeccccccccccccccccchhcchHHHHHHHhhhhhcceEeec
Q ss_pred eCCCcEEEEEcCCCCCCCCCcceeeeecccccceEEEEEecCCCceEEEeeCCCeEEEeecCC-CeeEEEecCccccCCc
Q 016974 128 GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT-GLRTSVFGGEFQSGHT 206 (379)
Q Consensus 128 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~h~ 206 (379)
+-+|. ......+..-.--...++..-.....-+++.+.-..-..+--.. ......-...+..+..
T Consensus 387 sc~Ge--------------~P~ls~t~~lp~~A~~Sl~~gl~s~g~~aa~gla~~sag~~a~s~~asSv~s~s~~pd~ks 452 (788)
T KOG2109|consen 387 SCEGE--------------PPALSLTCQLPAYADTSLDLGLQSSGGLAAEGLATSSAGYTAHSYTASSVFSRSVKPDSKS 452 (788)
T ss_pred ccCCC--------------CcccccccccchhhchhhhccccccCcccceeeeeccccccccccccceeeccccccchhh
Q ss_pred cCeEEEEEeCCCC-----cEEEEecCCCcEEEEEccCCccceEEEecccCCeeEEEEccCCCEEEEeeCCCeE-EEEECC
Q 016974 207 ADVLSVSISGSNS-----RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTC-RLFDIR 280 (379)
Q Consensus 207 ~~v~~~~~~~~~~-----~~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~v~~sp~g~~l~s~s~D~~i-~iwd~~ 280 (379)
..+.....-..++ .-++.++.++ ....++-+-.|......+.|+|+++.+.++...+.. .++-+.
T Consensus 453 ~gv~~gsv~k~~q~~~~~l~~llv~~ps---------Gd~vvqh~vahs~~gv~~Ef~~~~~l~lSad~~e~ef~~f~V~ 523 (788)
T KOG2109|consen 453 VGVGSGSVTKANQGVITVLNLLLVGEPS---------GDGVVQHYVAHSDPGVYIEFSPDQRLVLSADANENEFNIFLVM 523 (788)
T ss_pred ccceeeeccccCccchhhhhheeeecCC---------CCceeEEEeeccCccceeeecccccceecccccccccceEEee
Q ss_pred CCce------eEEEeeccCCCCCCCeEEEEEccCCCEEEEEEecCcEEEE
Q 016974 281 TGHQ------LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVW 324 (379)
Q Consensus 281 ~~~~------~~~~~~~~~~~~~~~v~~~~fs~~g~~l~sg~~dg~i~iw 324 (379)
.-.. .+..+..+.......|..++|+.+.++++.-...++=+++
T Consensus 524 Ph~~wsslaav~hly~l~rG~TsaKv~~~afs~dsrw~A~~t~~~TthVf 573 (788)
T KOG2109|consen 524 PHATWSSLAAVQHLYKLNRGSTSAKVVSTAFSEDSRWLAITTNHATTHVF 573 (788)
T ss_pred cccccHHHhhhhhhhhccCCCccceeeeeEeecchhhhhhhhcCCceeee
No 495
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=51.01 E-value=83 Score=21.99 Aligned_cols=49 Identities=10% Similarity=0.220 Sum_probs=30.4
Q ss_pred CCcEEEEECCCCceeeEeecCCcceEEEEECCCCCEEEEee-CCCcEEEEEcC
Q 016974 88 DGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGG-LDSVCSIFNLN 139 (379)
Q Consensus 88 D~~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~d~~i~iw~~~ 139 (379)
-+.|.-||.. ..+...........+.++|++++|..++ ..+.|.+|...
T Consensus 35 ~~~Vvyyd~~---~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 35 WGNVVYYDGK---EVKVVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CceEEEEeCC---EeEEeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 3455566632 2333333334567889999999877665 46778887653
No 496
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=50.71 E-value=26 Score=29.80 Aligned_cols=33 Identities=18% Similarity=0.361 Sum_probs=28.0
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016974 1 MSSSVSELKERHAAAIETVNSLRERLKQKRQQL 33 (379)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (379)
|++.+.+|+++++++...++.|+++..+.++++
T Consensus 2 v~~~L~eL~qrk~~Lq~eIe~LerR~~ri~~Em 34 (283)
T PF11285_consen 2 VQEALKELEQRKQALQIEIEQLERRRERIEKEM 34 (283)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999988887777665
No 497
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=50.21 E-value=3.1e+02 Score=28.28 Aligned_cols=148 Identities=16% Similarity=0.196 Sum_probs=78.7
Q ss_pred EEEEecCCCcEEEEEccCCccceEEEecccCCe-------------eEEEEcc--CCCEEEEeeC----------CCeEE
Q 016974 221 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDV-------------NTVKFFP--DGNRFGTGSD----------DGTCR 275 (379)
Q Consensus 221 ~l~sg~~d~~i~vwd~~~~~~~~~~~~~h~~~v-------------~~v~~sp--~g~~l~s~s~----------D~~i~ 275 (379)
.++.++.|+.+.-.|.++.+ .+..+. ..+.| ..+.-.| .+..++.|+. +|.|+
T Consensus 262 rV~~~T~Dg~LiALDA~TGk-~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~ 339 (764)
T TIGR03074 262 RIILPTSDARLIALDADTGK-LCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR 339 (764)
T ss_pred EEEEecCCCeEEEEECCCCC-EEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence 56667778888877876653 332221 11111 0111122 1345555642 68899
Q ss_pred EEECCCCceeEEEeeccCC-------------CCCCCeEEEEEccCCCEEEEEEe------------------cCcEEEE
Q 016974 276 LFDIRTGHQLQVYYQQHGE-------------NEIPHVTSIAFSISGRLLFAGYS------------------NGDCYVW 324 (379)
Q Consensus 276 iwd~~~~~~~~~~~~~~~~-------------~~~~~v~~~~fs~~g~~l~sg~~------------------dg~i~iw 324 (379)
-+|.++|+.+-.+...... .........++++....++.+.. .+.|.-.
T Consensus 340 A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvAL 419 (764)
T TIGR03074 340 AFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVAL 419 (764)
T ss_pred EEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEE
Confidence 9999999987555321100 00011134566666665555432 2345555
Q ss_pred eCCCceEEEecccccCCc--------cCceeEEEECC-CCC---eEEEeeCCCcEEEEecC
Q 016974 325 DTLLAKVVLNLGSLQNSH--------EGRITCLGLSA-DGS---ALCTGSWDTNLKIWAFG 373 (379)
Q Consensus 325 d~~~~~~~~~~~~~~~~h--------~~~v~~~~~s~-d~~---~l~s~s~D~~i~vw~~~ 373 (379)
|..+++....... ..| ..++. +.+.. +|+ .|+.++.+|.+++.|-.
T Consensus 420 D~~TGk~~W~~Q~--~~hD~WD~D~~~~p~L-~d~~~~~G~~~~~v~~~~K~G~~~vlDr~ 477 (764)
T TIGR03074 420 DATTGKERWVFQT--VHHDLWDMDVPAQPSL-VDLPDADGTTVPALVAPTKQGQIYVLDRR 477 (764)
T ss_pred eCCCCceEEEecc--cCCccccccccCCceE-EeeecCCCcEeeEEEEECCCCEEEEEECC
Confidence 6677776654422 122 11221 22322 563 78899999999888753
No 498
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=49.31 E-value=3.1e+02 Score=28.16 Aligned_cols=73 Identities=16% Similarity=0.015 Sum_probs=50.6
Q ss_pred cCCeeEEEEccCCCEEEEeeCCCeEEEEECCCCceeEEE-eeccCC-------------CCCCCeEEEEEccCCCEEEEE
Q 016974 250 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY-YQQHGE-------------NEIPHVTSIAFSISGRLLFAG 315 (379)
Q Consensus 250 ~~~v~~v~~sp~g~~l~s~s~D~~i~iwd~~~~~~~~~~-~~~~~~-------------~~~~~v~~~~fs~~g~~l~sg 315 (379)
.+.|.++....-+.+++..-.||+|.++|..+.+.+... ...... .....+..++|||++-.++.-
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence 356778887777888999999999999998876554333 000000 011133458899999999888
Q ss_pred EecCcEE
Q 016974 316 YSNGDCY 322 (379)
Q Consensus 316 ~~dg~i~ 322 (379)
..+|.+.
T Consensus 339 ~~~~~~~ 345 (753)
T PF11635_consen 339 DEDGKTK 345 (753)
T ss_pred ecCCCce
Confidence 8888855
No 499
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=49.02 E-value=32 Score=19.60 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=15.8
Q ss_pred CCCeEEEEcCCCcEEEEECCC
Q 016974 78 ERNRIVSASQDGRLIVWNALT 98 (379)
Q Consensus 78 ~~~~l~s~s~D~~v~iwd~~~ 98 (379)
.+..|+.++.||++...|..+
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 356888899999999998753
No 500
>PRK00295 hypothetical protein; Provisional
Probab=46.39 E-value=39 Score=22.36 Aligned_cols=29 Identities=28% Similarity=0.455 Sum_probs=19.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016974 3 SSVSELKERHAAAIETVNSLRERLKQKRQ 31 (379)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (379)
+-|.+|+++.+..+..++.|.+.+.+.++
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~ 33 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQR 33 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677777777777777777666655443
Done!