BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016975
(379 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2L7C|A Chain A, Biophysical Studies Of Lipid Interacting Regions Of Dgd2
In Arabidopsis Thaliana
Length = 19
Score = 38.1 bits (87), Expect = 0.008, Method: Composition-based stats.
Identities = 15/16 (93%), Positives = 15/16 (93%)
Query: 140 FAKGAYYIGKMVWSKG 155
F KGAYYIGKMVWSKG
Sbjct: 3 FTKGAYYIGKMVWSKG 18
>pdb|4II2|A Chain A, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
pdb|4II3|A Chain A, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme
1 (uba1) In Complex With Ubiquitin And Atp/mg
pdb|4II3|C Chain C, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme
1 (uba1) In Complex With Ubiquitin And Atp/mg
Length = 1001
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 63/162 (38%), Gaps = 38/162 (23%)
Query: 65 YLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIRLSAATQEYANSIICNVHGVNPKFLE 124
+++++ N R + + A+ + K++ + + ++C LE
Sbjct: 808 HIDFITAASNLRAMNYDITPADRFKTKFVAGKIVPAMCTSTAVVSGLVC---------LE 858
Query: 125 I-----GKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYK------------------ELLE 161
+ GKKK E+ +NG A G + + S K L E
Sbjct: 859 LVKLVDGKKKIEEYKNGFFNLAIGLFTFSDPIASPKMKVNGKEIDKIWDRYNLPDCTLQE 918
Query: 162 LLDDHQKELAGLEVDLYGNG-----EDFNQIQEAAEKLKIVV 198
L+D QKE GLEV + +G +F ++ AE+L + +
Sbjct: 919 LIDYFQKE-EGLEVTMLSSGVSLLYANFQPPKKLAERLPLKI 959
>pdb|3D3L|A Chain A, The 2.6 A Crystal Structure Of The Lipoxygenase Domain Of
Human Arachidonate 12-Lipoxygenase, 12s-Type (Casp
Target)
pdb|3D3L|B Chain B, The 2.6 A Crystal Structure Of The Lipoxygenase Domain Of
Human Arachidonate 12-Lipoxygenase, 12s-Type (Casp
Target)
Length = 541
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 12 KRSILGVGDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNY 65
+R+ + S PD++AD +L P L + W+ RYV GIVH Y
Sbjct: 276 RRAAAQLTYCSLCPPDDLADRGLLGLPGALYAHDALRLWEIIARYVEGIVHLFY 329
>pdb|3ZHE|B Chain B, Structure Of The C. Elegans Smg5-smg7 Complex
pdb|3ZHE|D Chain D, Structure Of The C. Elegans Smg5-smg7 Complex
Length = 395
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 134 QNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKE 169
++GT + Y+ K +W Y+ LL+ LDD+++E
Sbjct: 271 EDGTELEQRAVEYV-KTIWCTAYRSLLKTLDDYKEE 305
>pdb|2GMH|A Chain A, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase In Complexed With Ubiquinone
pdb|2GMH|B Chain B, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase In Complexed With Ubiquinone
pdb|2GMJ|A Chain A, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase
pdb|2GMJ|B Chain B, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase
Length = 584
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 19/102 (18%)
Query: 170 LAGLEVDLYGN-----GEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTD 224
L GL ++ +GN G + + E AE L V VYPG A+++FH+ +T D
Sbjct: 128 LPGLPMNNHGNYVVRLGHLVSWMGEQAEALG--VEVYPGYAAAEILFHEDGSVKGIATND 185
Query: 225 VVC-------TTTAEALAM-GKIVV----CANHPSNDFFKQF 254
V TT L + K+ + C H + +K+F
Sbjct: 186 VGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYKKF 227
>pdb|3QPI|A Chain A, Crystal Structure Of Dimeric Chlorite Dismutases From
Nitrobacter Winogradskyi
pdb|3QPI|B Chain B, Crystal Structure Of Dimeric Chlorite Dismutases From
Nitrobacter Winogradskyi
Length = 189
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 37 EP-EHLTWFHHGKRWKTKFRYVVGIVH-TNYLEYVKREKNGRL 77
EP + LTWF + T F +VG++ T YV+RE + RL
Sbjct: 137 EPFDFLTWFEYAPEHATMFEDLVGVLRATEEWTYVEREVDIRL 179
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,056,546
Number of Sequences: 62578
Number of extensions: 444764
Number of successful extensions: 1043
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1041
Number of HSP's gapped (non-prelim): 6
length of query: 379
length of database: 14,973,337
effective HSP length: 100
effective length of query: 279
effective length of database: 8,715,537
effective search space: 2431634823
effective search space used: 2431634823
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)