Query 016975
Match_columns 379
No_of_seqs 302 out of 2199
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 04:30:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016975.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016975hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02501 digalactosyldiacylgly 100.0 6.9E-67 1.5E-71 502.2 32.2 378 1-378 406-789 (794)
2 PLN02846 digalactosyldiacylgly 100.0 2.5E-62 5.4E-67 465.6 32.7 375 1-375 88-462 (462)
3 PLN02871 UDP-sulfoquinovose:DA 100.0 1.6E-34 3.5E-39 282.4 22.3 278 20-307 135-437 (465)
4 PRK15427 colanic acid biosynth 100.0 3.1E-34 6.7E-39 275.0 23.4 264 22-303 111-404 (406)
5 TIGR02468 sucrsPsyn_pln sucros 100.0 8.5E-34 1.8E-38 288.1 25.5 273 29-305 310-671 (1050)
6 cd03796 GT1_PIG-A_like This fa 100.0 6.2E-33 1.3E-37 266.3 24.6 270 20-306 79-369 (398)
7 TIGR03088 stp2 sugar transfera 100.0 5.9E-33 1.3E-37 264.3 22.2 276 19-304 71-372 (374)
8 cd03813 GT1_like_3 This family 100.0 1.5E-32 3.2E-37 269.0 23.9 267 28-303 172-475 (475)
9 PRK15179 Vi polysaccharide bio 100.0 1.4E-32 3E-37 274.4 24.1 278 19-304 390-693 (694)
10 PRK15484 lipopolysaccharide 1, 100.0 2.7E-32 5.8E-37 259.9 23.2 253 27-304 97-377 (380)
11 TIGR03449 mycothiol_MshA UDP-N 100.0 4.5E-32 9.7E-37 261.1 23.9 274 28-305 100-402 (405)
12 KOG1111 N-acetylglucosaminyltr 100.0 8.4E-33 1.8E-37 244.4 16.2 274 21-310 81-372 (426)
13 PRK10307 putative glycosyl tra 100.0 9.6E-32 2.1E-36 259.3 23.7 273 28-306 105-409 (412)
14 TIGR02918 accessory Sec system 100.0 6.6E-32 1.4E-36 263.3 22.5 263 23-303 205-498 (500)
15 cd03792 GT1_Trehalose_phosphor 100.0 9.3E-32 2E-36 256.0 22.8 265 25-304 81-371 (372)
16 TIGR02472 sucr_P_syn_N sucrose 100.0 1.2E-31 2.6E-36 260.2 22.2 278 21-303 104-439 (439)
17 cd04962 GT1_like_5 This family 100.0 1.8E-31 4E-36 253.4 23.0 277 19-304 74-370 (371)
18 PRK00654 glgA glycogen synthas 100.0 1.6E-31 3.6E-36 260.9 22.1 210 94-305 198-463 (466)
19 cd05844 GT1_like_7 Glycosyltra 100.0 1.7E-31 3.7E-36 253.3 20.2 266 21-300 74-366 (367)
20 cd03805 GT1_ALG2_like This fam 100.0 6E-31 1.3E-35 252.0 24.0 268 25-298 90-392 (392)
21 PRK15490 Vi polysaccharide bio 100.0 1.4E-31 3.1E-36 256.1 18.8 278 18-305 269-576 (578)
22 cd03814 GT1_like_2 This family 100.0 8.2E-31 1.8E-35 247.1 23.7 275 20-303 74-364 (364)
23 PRK14098 glycogen synthase; Pr 100.0 4.5E-31 9.7E-36 257.8 22.4 210 94-305 221-486 (489)
24 PRK14099 glycogen synthase; Pr 100.0 3.6E-31 7.9E-36 258.2 21.4 211 94-306 210-480 (485)
25 TIGR02095 glgA glycogen/starch 100.0 8.8E-31 1.9E-35 256.7 23.9 209 94-304 206-472 (473)
26 cd03818 GT1_ExpC_like This fam 100.0 8E-31 1.7E-35 251.6 22.1 207 94-300 157-396 (396)
27 PLN02939 transferase, transfer 100.0 1.1E-30 2.3E-35 261.9 22.3 212 93-306 693-968 (977)
28 TIGR02149 glgA_Coryne glycogen 100.0 2.6E-30 5.6E-35 247.3 21.4 270 27-304 81-386 (388)
29 PLN02316 synthase/transferase 100.0 1.1E-29 2.3E-34 259.1 25.1 259 28-305 708-1034(1036)
30 TIGR03087 stp1 sugar transfera 100.0 1.6E-29 3.4E-34 242.7 24.9 274 20-304 95-396 (397)
31 cd03802 GT1_AviGT4_like This f 100.0 6.8E-30 1.5E-34 239.1 20.8 248 20-303 78-335 (335)
32 cd03806 GT1_ALG11_like This fa 100.0 8.7E-30 1.9E-34 245.2 21.0 259 27-295 105-417 (419)
33 TIGR02470 sucr_synth sucrose s 100.0 2E-29 4.3E-34 251.7 23.9 274 28-304 384-747 (784)
34 cd03816 GT1_ALG1_like This fam 100.0 3.4E-29 7.4E-34 241.2 22.4 273 25-299 91-411 (415)
35 cd03800 GT1_Sucrose_synthase T 100.0 2.8E-29 6.1E-34 240.5 21.2 275 21-299 91-397 (398)
36 cd03791 GT1_Glycogen_synthase_ 100.0 5.2E-29 1.1E-33 244.7 23.5 208 94-303 211-475 (476)
37 PRK09922 UDP-D-galactose:(gluc 100.0 4.8E-29 1E-33 236.1 21.4 259 20-305 75-356 (359)
38 PLN00142 sucrose synthase 100.0 3.7E-29 8E-34 249.8 21.3 167 138-304 570-770 (815)
39 cd03812 GT1_CapH_like This fam 100.0 7.3E-29 1.6E-33 234.2 22.2 251 20-279 71-334 (358)
40 cd04951 GT1_WbdM_like This fam 100.0 1.4E-28 3E-33 232.3 24.0 269 20-303 70-359 (360)
41 PRK10125 putative glycosyl tra 100.0 5.4E-29 1.2E-33 238.1 20.1 269 20-304 84-404 (405)
42 PLN02949 transferase, transfer 100.0 2.4E-28 5.1E-33 236.2 24.3 204 94-304 221-456 (463)
43 cd03822 GT1_ecORF704_like This 100.0 1.3E-28 2.8E-33 232.4 22.2 271 20-303 67-366 (366)
44 cd03821 GT1_Bme6_like This fam 100.0 2.3E-28 5.1E-33 230.5 23.1 271 26-300 84-375 (375)
45 PLN02275 transferase, transfer 100.0 1.9E-28 4.1E-33 232.8 22.1 244 25-274 96-371 (371)
46 cd03807 GT1_WbnK_like This fam 100.0 1.4E-28 3E-33 231.3 21.0 275 19-303 70-365 (365)
47 cd03817 GT1_UGDG_like This fam 100.0 5.8E-28 1.3E-32 228.0 24.6 274 23-303 78-372 (374)
48 cd03801 GT1_YqgM_like This fam 100.0 3.1E-28 6.7E-33 228.5 22.6 277 20-303 76-374 (374)
49 cd03795 GT1_like_4 This family 100.0 2E-28 4.3E-33 231.0 21.4 256 25-295 79-357 (357)
50 cd04946 GT1_AmsK_like This fam 100.0 2.6E-28 5.6E-33 234.5 21.2 254 27-299 125-406 (407)
51 cd04949 GT1_gtfA_like This fam 100.0 1.5E-28 3.2E-33 233.9 19.2 258 27-298 97-372 (372)
52 cd03798 GT1_wlbH_like This fam 100.0 6.3E-28 1.4E-32 227.1 23.1 274 20-304 82-376 (377)
53 cd03794 GT1_wbuB_like This fam 100.0 4.3E-28 9.3E-33 229.8 22.0 271 26-299 96-394 (394)
54 cd04955 GT1_like_6 This family 100.0 4.4E-28 9.6E-33 229.2 22.0 262 27-303 84-363 (363)
55 cd03820 GT1_amsD_like This fam 100.0 6.2E-28 1.3E-32 225.1 22.6 260 18-299 72-347 (348)
56 cd03819 GT1_WavL_like This fam 100.0 3.3E-28 7.2E-33 229.5 20.7 256 19-293 68-354 (355)
57 cd03799 GT1_amsK_like This is 100.0 2.3E-28 5E-33 230.3 19.4 257 20-297 70-354 (355)
58 cd03809 GT1_mtfB_like This fam 100.0 3.3E-28 7.2E-33 229.6 19.0 268 21-300 77-365 (365)
59 cd03825 GT1_wcfI_like This fam 100.0 1.1E-27 2.3E-32 226.7 21.5 277 20-304 42-364 (365)
60 PHA01630 putative group 1 glyc 100.0 2.1E-27 4.6E-32 220.7 21.7 196 94-304 95-330 (331)
61 cd03804 GT1_wbaZ_like This fam 100.0 5.2E-27 1.1E-31 221.5 24.6 250 23-298 77-350 (351)
62 cd03808 GT1_cap1E_like This fa 100.0 2.8E-27 6E-32 221.7 21.6 267 20-299 71-358 (359)
63 PHA01633 putative glycosyl tra 100.0 9.1E-27 2E-31 214.2 24.1 223 55-300 71-335 (335)
64 cd03823 GT1_ExpE7_like This fa 100.0 2.2E-27 4.7E-32 223.1 18.5 256 20-303 87-358 (359)
65 cd03811 GT1_WabH_like This fam 99.9 2.9E-26 6.2E-31 214.0 21.4 246 19-276 71-332 (353)
66 cd03788 GT1_TPS Trehalose-6-Ph 99.9 3E-25 6.5E-30 215.6 13.8 266 29-301 131-458 (460)
67 PF00534 Glycos_transf_1: Glyc 99.9 1.2E-23 2.6E-28 178.1 12.2 145 134-278 8-160 (172)
68 TIGR02400 trehalose_OtsA alpha 99.9 2E-22 4.3E-27 194.5 19.5 259 29-302 127-454 (456)
69 cd04950 GT1_like_1 Glycosyltra 99.9 3.7E-22 8E-27 189.9 20.2 256 27-303 100-370 (373)
70 cd03793 GT1_Glycogen_synthase_ 99.9 7.8E-22 1.7E-26 189.5 21.4 98 209-306 470-588 (590)
71 PRK05749 3-deoxy-D-manno-octul 99.9 8.3E-22 1.8E-26 190.8 16.6 271 20-304 115-419 (425)
72 PLN03063 alpha,alpha-trehalose 99.9 1.1E-21 2.3E-26 200.7 15.4 272 30-306 148-479 (797)
73 PLN02605 monogalactosyldiacylg 99.8 2.1E-20 4.5E-25 178.4 15.4 259 19-301 90-378 (382)
74 PRK13609 diacylglycerol glucos 99.8 1.7E-19 3.6E-24 172.3 16.2 257 19-306 94-373 (380)
75 PRK14501 putative bifunctional 99.8 9.8E-20 2.1E-24 186.4 15.3 188 116-306 235-464 (726)
76 cd03785 GT1_MurG MurG is an N- 99.8 2E-19 4.4E-24 169.6 16.0 237 20-286 80-336 (350)
77 cd01635 Glycosyltransferase_GT 99.8 5.2E-19 1.1E-23 155.4 16.9 181 21-260 43-229 (229)
78 COG0297 GlgA Glycogen synthase 99.8 2.1E-18 4.5E-23 165.2 21.9 165 140-306 293-479 (487)
79 PRK00726 murG undecaprenyldiph 99.8 4.2E-19 9E-24 168.1 16.1 255 19-303 81-356 (357)
80 PRK13608 diacylglycerol glucos 99.8 5.7E-19 1.2E-23 168.8 15.4 256 19-304 94-371 (391)
81 KOG0853 Glycosyltransferase [C 99.8 1.3E-18 2.9E-23 164.1 14.2 273 28-306 144-469 (495)
82 TIGR01133 murG undecaprenyldip 99.8 1.6E-17 3.5E-22 156.5 17.1 234 20-286 81-333 (348)
83 PF13692 Glyco_trans_1_4: Glyc 99.8 2.2E-18 4.7E-23 139.8 8.9 130 142-276 3-135 (135)
84 COG0438 RfaG Glycosyltransfera 99.8 2.5E-16 5.4E-21 146.3 22.8 204 94-304 151-376 (381)
85 PRK09814 beta-1,6-galactofuran 99.7 1.7E-17 3.7E-22 155.3 14.0 224 21-273 55-297 (333)
86 TIGR00236 wecB UDP-N-acetylglu 99.7 6E-17 1.3E-21 153.8 12.3 264 19-300 76-363 (365)
87 cd03786 GT1_UDP-GlcNAc_2-Epime 99.7 1.1E-16 2.4E-21 151.8 12.8 261 20-301 79-361 (363)
88 TIGR02398 gluc_glyc_Psyn gluco 99.7 1.3E-15 2.8E-20 146.6 18.4 159 116-279 255-451 (487)
89 KOG1387 Glycosyltransferase [C 99.7 2.2E-14 4.8E-19 127.2 20.9 270 27-303 148-457 (465)
90 PRK00025 lpxB lipid-A-disaccha 99.6 7.9E-15 1.7E-19 140.0 14.9 239 19-279 75-344 (380)
91 PLN03064 alpha,alpha-trehalose 99.6 2.2E-14 4.7E-19 146.8 17.3 186 116-306 333-563 (934)
92 TIGR03713 acc_sec_asp1 accesso 99.6 3E-14 6.6E-19 139.4 14.1 155 143-301 321-518 (519)
93 TIGR02094 more_P_ylases alpha- 99.5 3.2E-12 6.9E-17 126.9 24.9 166 138-304 386-600 (601)
94 TIGR00215 lpxB lipid-A-disacch 99.5 3.5E-13 7.6E-18 128.5 15.5 203 20-245 80-294 (385)
95 KOG2941 Beta-1,4-mannosyltrans 99.4 7.4E-12 1.6E-16 111.5 17.9 272 27-299 101-436 (444)
96 PF13524 Glyco_trans_1_2: Glyc 99.3 2.3E-12 4.9E-17 97.0 5.9 85 216-300 1-92 (92)
97 TIGR02919 accessory Sec system 99.3 6.6E-11 1.4E-15 113.5 13.3 125 142-279 283-414 (438)
98 PF05693 Glycogen_syn: Glycoge 99.1 3.2E-09 6.8E-14 102.6 15.7 98 209-306 465-583 (633)
99 PF00982 Glyco_transf_20: Glyc 99.0 1.2E-08 2.5E-13 99.0 16.6 238 29-279 141-443 (474)
100 PRK10117 trehalose-6-phosphate 99.0 2.8E-08 6.1E-13 95.4 17.2 163 140-305 254-454 (474)
101 cd04299 GT1_Glycogen_Phosphory 98.8 6.6E-08 1.4E-12 98.3 15.2 167 138-305 475-690 (778)
102 PLN02205 alpha,alpha-trehalose 98.7 1.9E-07 4.2E-12 96.6 15.1 137 140-279 338-520 (854)
103 TIGR03492 conserved hypothetic 98.7 2.1E-07 4.5E-12 89.1 14.0 177 90-279 157-367 (396)
104 COG0707 MurG UDP-N-acetylgluco 98.7 2.4E-07 5.3E-12 86.7 13.0 250 19-302 81-351 (357)
105 COG0380 OtsA Trehalose-6-phosp 98.7 1.6E-06 3.5E-11 83.0 17.3 136 141-279 282-448 (486)
106 TIGR03568 NeuC_NnaA UDP-N-acet 98.6 1.2E-06 2.7E-11 82.9 15.2 98 197-301 263-364 (365)
107 COG1519 KdtA 3-deoxy-D-manno-o 98.6 1E-05 2.2E-10 75.4 19.2 179 95-277 179-387 (419)
108 PF02684 LpxB: Lipid-A-disacch 98.5 1.1E-06 2.4E-11 82.5 12.5 205 20-245 73-287 (373)
109 PRK12446 undecaprenyldiphospho 98.4 4.2E-06 9.1E-11 78.9 13.8 247 20-302 82-349 (352)
110 PF13528 Glyco_trans_1_3: Glyc 98.4 6.1E-06 1.3E-10 76.7 13.1 113 140-272 192-316 (318)
111 TIGR03590 PseG pseudaminic aci 98.4 3.1E-06 6.7E-11 77.2 10.5 97 141-245 171-268 (279)
112 PF02350 Epimerase_2: UDP-N-ac 98.2 7.4E-06 1.6E-10 76.9 9.6 238 20-276 58-318 (346)
113 COG3914 Spy Predicted O-linked 98.2 3.6E-05 7.8E-10 74.0 13.9 133 143-276 430-577 (620)
114 PF13844 Glyco_transf_41: Glyc 98.2 2.6E-05 5.7E-10 74.8 12.5 167 134-303 278-465 (468)
115 COG0763 LpxB Lipid A disacchar 98.1 9.6E-06 2.1E-10 74.8 8.2 238 20-277 76-345 (381)
116 cd03784 GT1_Gtf_like This fami 98.0 0.00016 3.5E-09 69.5 15.6 120 141-276 240-372 (401)
117 TIGR01426 MGT glycosyltransfer 97.9 0.00029 6.2E-09 67.6 13.5 126 142-278 227-361 (392)
118 TIGR00661 MJ1255 conserved hyp 97.8 0.00059 1.3E-08 63.6 14.1 116 143-278 191-316 (321)
119 PRK02797 4-alpha-L-fucosyltran 97.8 0.0091 2E-07 54.0 20.5 155 142-306 146-318 (322)
120 PRK01021 lpxB lipid-A-disaccha 97.6 0.00092 2E-08 66.1 11.9 201 20-245 301-515 (608)
121 COG0381 WecB UDP-N-acetylgluco 97.5 0.0015 3.2E-08 60.8 12.3 263 20-303 83-369 (383)
122 PF04007 DUF354: Protein of un 97.4 0.0053 1.2E-07 57.1 14.5 218 18-276 72-310 (335)
123 PF13439 Glyco_transf_4: Glyco 97.3 4.1E-05 8.9E-10 64.0 -0.5 102 17-123 68-176 (177)
124 PF04101 Glyco_tran_28_C: Glyc 97.3 9.7E-06 2.1E-10 67.9 -5.0 100 175-279 35-147 (167)
125 PHA03392 egt ecdysteroid UDP-g 97.1 0.0081 1.8E-07 59.5 13.1 121 142-278 298-434 (507)
126 PRK14089 ipid-A-disaccharide s 97.0 0.0038 8.2E-08 58.5 9.3 81 153-245 182-262 (347)
127 KOG3742 Glycogen synthase [Car 97.0 0.00054 1.2E-08 63.9 3.1 96 209-304 496-612 (692)
128 COG4641 Uncharacterized protei 97.0 0.006 1.3E-07 56.3 9.7 176 116-303 168-360 (373)
129 PF07429 Glyco_transf_56: 4-al 96.6 0.27 5.9E-06 45.4 17.6 134 141-277 184-334 (360)
130 COG1819 Glycosyl transferases, 96.6 0.028 6.1E-07 54.1 11.7 123 143-279 240-371 (406)
131 PF13579 Glyco_trans_4_4: Glyc 96.5 0.0036 7.8E-08 51.0 4.7 82 19-109 61-145 (160)
132 PF00201 UDPGT: UDP-glucoronos 96.5 0.022 4.8E-07 56.5 10.8 124 142-277 278-410 (500)
133 COG3660 Predicted nucleoside-d 96.2 0.34 7.4E-06 42.8 14.7 147 95-245 111-273 (329)
134 PF06258 Mito_fiss_Elm1: Mitoc 95.8 0.29 6.3E-06 45.2 13.6 104 139-246 145-258 (311)
135 PF13477 Glyco_trans_4_2: Glyc 95.7 0.012 2.6E-07 47.2 3.7 48 18-65 63-110 (139)
136 PLN02410 UDP-glucoronosyl/UDP- 95.7 0.63 1.4E-05 45.5 16.1 76 197-277 325-411 (451)
137 PRK14986 glycogen phosphorylas 95.5 0.13 2.8E-06 53.0 11.0 131 138-268 540-702 (815)
138 PLN02562 UDP-glycosyltransfera 95.5 0.16 3.5E-06 49.5 11.5 125 142-276 275-413 (448)
139 cd04300 GT1_Glycogen_Phosphory 95.4 0.12 2.6E-06 53.2 10.5 131 138-268 527-689 (797)
140 PF04464 Glyphos_transf: CDP-G 95.4 0.11 2.3E-06 49.4 9.8 177 94-278 135-338 (369)
141 COG0058 GlgP Glucan phosphoryl 95.3 0.14 3.1E-06 52.0 10.2 128 138-265 484-634 (750)
142 PLN02448 UDP-glycosyltransfera 95.0 0.24 5.2E-06 48.6 10.8 125 141-277 275-416 (459)
143 PF00343 Phosphorylase: Carboh 94.7 0.46 1E-05 48.3 12.0 131 138-268 441-603 (713)
144 PF05159 Capsule_synth: Capsul 94.6 0.75 1.6E-05 41.6 12.4 100 140-246 116-227 (269)
145 PF15024 Glyco_transf_18: Glyc 94.4 0.65 1.4E-05 45.7 11.8 146 143-304 279-455 (559)
146 TIGR02093 P_ylase glycogen/sta 94.3 0.25 5.3E-06 50.9 9.3 132 138-269 524-687 (794)
147 COG4671 Predicted glycosyl tra 94.2 1.1 2.4E-05 41.4 12.2 130 141-277 220-366 (400)
148 PRK14985 maltodextrin phosphor 94.1 0.18 3.9E-06 51.7 7.8 131 138-268 526-688 (798)
149 cd03789 GT1_LPS_heptosyltransf 94.0 0.36 7.7E-06 43.9 9.1 96 143-245 124-225 (279)
150 PF10087 DUF2325: Uncharacteri 93.9 0.27 5.8E-06 36.9 6.7 71 175-245 2-83 (97)
151 PLN02670 transferase, transfer 93.9 1.7 3.8E-05 42.6 13.9 77 198-277 341-430 (472)
152 COG3980 spsG Spore coat polysa 93.7 0.3 6.5E-06 43.6 7.5 89 143-241 161-250 (318)
153 PLN02210 UDP-glucosyl transfer 93.4 1.2 2.7E-05 43.6 12.0 130 141-277 270-416 (456)
154 PLN03004 UDP-glycosyltransfera 93.3 1.3 2.9E-05 43.2 12.1 77 197-276 335-424 (451)
155 TIGR02193 heptsyl_trn_I lipopo 93.2 2.2 4.8E-05 39.5 13.1 125 141-273 180-318 (319)
156 PLN03007 UDP-glucosyltransfera 93.0 1.1 2.4E-05 44.2 11.2 79 196-277 345-441 (482)
157 PF09314 DUF1972: Domain of un 92.9 0.43 9.4E-06 40.3 7.0 81 28-112 91-172 (185)
158 COG1817 Uncharacterized protei 92.8 6.8 0.00015 35.8 14.5 218 19-278 74-316 (346)
159 PLN02555 limonoid glucosyltran 92.5 1.6 3.4E-05 43.0 11.4 77 196-277 337-430 (480)
160 COG0859 RfaF ADP-heptose:LPS h 92.3 0.79 1.7E-05 42.9 8.8 98 141-245 176-278 (334)
161 TIGR02195 heptsyl_trn_II lipop 91.7 1.2 2.5E-05 41.7 9.2 96 142-244 176-277 (334)
162 PLN02152 indole-3-acetate beta 91.7 1.8 3.9E-05 42.3 10.6 130 141-277 262-418 (455)
163 PF01075 Glyco_transf_9: Glyco 91.6 0.92 2E-05 40.2 8.1 98 141-245 106-210 (247)
164 PLN02173 UDP-glucosyl transfer 90.9 3 6.4E-05 40.8 11.2 79 196-277 317-409 (449)
165 PLN02863 UDP-glucoronosyl/UDP- 90.8 5.5 0.00012 39.3 13.1 74 197-275 344-432 (477)
166 KOG1050 Trehalose-6-phosphate 90.7 3.6 7.8E-05 42.5 12.0 138 140-279 275-443 (732)
167 PLN02764 glycosyltransferase f 90.6 8.7 0.00019 37.6 14.1 77 198-277 319-408 (453)
168 PLN02554 UDP-glycosyltransfera 89.7 4.8 0.0001 39.8 11.8 74 197-275 343-439 (481)
169 PLN02167 UDP-glycosyltransfera 89.3 5.9 0.00013 39.1 12.0 75 197-276 341-434 (475)
170 PLN02207 UDP-glycosyltransfera 89.3 4.9 0.00011 39.5 11.3 77 196-275 332-425 (468)
171 PF12000 Glyco_trans_4_3: Gkyc 89.0 0.87 1.9E-05 38.0 5.1 90 27-123 64-170 (171)
172 PRK10964 ADP-heptose:LPS hepto 88.9 3.2 6.9E-05 38.5 9.5 93 145-245 183-280 (322)
173 PLN02208 glycosyltransferase f 88.8 5.8 0.00013 38.7 11.4 79 197-278 312-403 (442)
174 PLN00414 glycosyltransferase f 88.4 11 0.00024 36.9 13.1 128 141-277 253-403 (446)
175 PF03016 Exostosin: Exostosin 88.2 0.64 1.4E-05 42.6 4.3 62 209-270 232-299 (302)
176 PLN00164 glucosyltransferase; 88.0 9.5 0.00021 37.7 12.5 77 198-277 341-432 (480)
177 PRK10916 ADP-heptose:LPS hepto 88.0 4.7 0.0001 37.9 10.1 96 142-244 182-287 (348)
178 PLN02992 coniferyl-alcohol glu 87.5 31 0.00068 34.1 17.1 78 197-277 339-428 (481)
179 TIGR03609 S_layer_CsaB polysac 85.8 26 0.00057 32.0 13.6 85 155-245 189-277 (298)
180 PRK10422 lipopolysaccharide co 85.8 5.7 0.00012 37.4 9.4 98 141-245 184-289 (352)
181 TIGR02201 heptsyl_trn_III lipo 83.5 7.6 0.00016 36.4 9.1 96 142-244 183-286 (344)
182 PLN02534 UDP-glycosyltransfera 83.0 22 0.00048 35.2 12.3 76 197-275 345-443 (491)
183 KOG1192 UDP-glucuronosyl and U 81.8 14 0.00031 36.4 10.8 79 197-279 336-425 (496)
184 PRK10017 colanic acid biosynth 77.6 72 0.0016 31.0 17.3 115 158-279 261-395 (426)
185 PF04230 PS_pyruv_trans: Polys 77.5 49 0.0011 29.0 12.7 88 153-245 189-284 (286)
186 TIGR00288 conserved hypothetic 76.2 22 0.00047 29.3 8.2 68 153-221 88-156 (160)
187 cd06289 PBP1_MalI_like Ligand- 75.7 55 0.0012 28.7 14.6 148 213-374 55-205 (268)
188 PF11997 DUF3492: Domain of un 74.6 9.8 0.00021 34.4 6.4 79 28-108 171-260 (268)
189 PF02670 DXP_reductoisom: 1-de 74.5 34 0.00073 27.1 8.6 95 141-244 24-121 (129)
190 TIGR01012 Sa_S2_E_A ribosomal 74.0 16 0.00034 31.3 7.1 91 153-245 43-139 (196)
191 cd05565 PTS_IIB_lactose PTS_II 73.5 11 0.00024 28.3 5.5 71 175-245 4-80 (99)
192 cd01080 NAD_bind_m-THF_DH_Cycl 73.2 49 0.0011 27.5 9.8 106 159-268 31-139 (168)
193 KOG3349 Predicted glycosyltran 72.7 32 0.0007 28.0 8.0 94 143-245 6-108 (170)
194 PF01113 DapB_N: Dihydrodipico 72.7 6.8 0.00015 30.7 4.4 43 205-247 59-101 (124)
195 TIGR00853 pts-lac PTS system, 70.8 10 0.00022 28.2 4.7 70 175-245 7-83 (95)
196 PRK15408 autoinducer 2-binding 70.8 92 0.002 29.1 12.7 41 332-372 194-234 (336)
197 PRK04020 rps2P 30S ribosomal p 70.2 21 0.00045 30.8 7.0 92 152-245 48-145 (204)
198 KOG4626 O-linked N-acetylgluco 70.0 16 0.00034 36.8 6.9 132 144-277 760-905 (966)
199 cd00027 BRCT Breast Cancer Sup 69.9 28 0.00061 23.0 6.7 62 173-244 2-65 (72)
200 PRK04531 acetylglutamate kinas 69.6 17 0.00036 35.0 7.0 121 141-276 37-163 (398)
201 PF13407 Peripla_BP_4: Peripla 69.6 62 0.0013 28.3 10.6 61 213-275 55-116 (257)
202 COG4567 Response regulator con 68.8 44 0.00094 27.3 8.0 127 171-300 8-153 (182)
203 KOG0832 Mitochondrial/chloropl 68.2 29 0.00063 30.2 7.4 30 215-245 175-204 (251)
204 PLN03015 UDP-glucosyl transfer 67.6 1.1E+02 0.0023 30.2 12.3 74 199-275 338-425 (470)
205 PF11071 DUF2872: Protein of u 67.3 37 0.00081 26.7 7.1 66 209-274 68-140 (141)
206 PF11440 AGT: DNA alpha-glucos 67.2 99 0.0022 28.1 16.5 129 145-275 187-352 (355)
207 TIGR01088 aroQ 3-dehydroquinat 66.9 14 0.00031 29.5 5.0 90 185-274 31-138 (141)
208 PRK05395 3-dehydroquinate dehy 66.9 14 0.00031 29.7 5.0 89 186-274 34-140 (146)
209 PRK13015 3-dehydroquinate dehy 66.7 14 0.00031 29.8 4.9 89 186-274 34-140 (146)
210 cd05564 PTS_IIB_chitobiose_lic 66.7 16 0.00035 27.1 5.1 70 175-245 3-79 (96)
211 cd01425 RPS2 Ribosomal protein 66.7 58 0.0013 27.7 9.2 73 172-245 56-158 (193)
212 KOG1021 Acetylglucosaminyltran 66.4 15 0.00033 36.0 6.3 67 209-276 339-409 (464)
213 cd06301 PBP1_rhizopine_binding 65.1 98 0.0021 27.2 13.4 43 333-376 169-212 (272)
214 PF00532 Peripla_BP_1: Peripla 64.3 1.1E+02 0.0024 27.6 11.4 189 156-375 16-209 (279)
215 PRK05447 1-deoxy-D-xylulose 5- 64.2 41 0.0009 32.0 8.4 117 152-277 35-161 (385)
216 PTZ00254 40S ribosomal protein 64.2 29 0.00062 30.9 6.9 94 151-245 50-149 (249)
217 COG2984 ABC-type uncharacteriz 62.7 61 0.0013 29.9 8.8 89 156-247 145-249 (322)
218 PF08323 Glyco_transf_5: Starc 62.4 7.1 0.00015 34.7 2.9 13 93-105 215-227 (245)
219 PF13905 Thioredoxin_8: Thiore 61.1 48 0.0011 23.9 6.9 79 141-220 2-84 (95)
220 PF01408 GFO_IDH_MocA: Oxidore 60.9 71 0.0015 24.2 8.2 70 170-245 23-94 (120)
221 cd00466 DHQase_II Dehydroquina 60.2 20 0.00044 28.7 4.7 90 185-274 31-138 (140)
222 PF01531 Glyco_transf_11: Glyc 59.2 59 0.0013 29.8 8.4 64 156-221 190-255 (298)
223 PF05116 S6PP: Sucrose-6F-phos 58.6 3.3 7.2E-05 36.9 0.1 44 333-376 19-63 (247)
224 COG1927 Mtd Coenzyme F420-depe 58.2 80 0.0017 27.1 8.1 38 142-183 5-42 (277)
225 cd06271 PBP1_AglR_RafR_like Li 58.1 1.3E+02 0.0028 26.3 15.2 149 213-375 59-209 (268)
226 cd06270 PBP1_GalS_like Ligand 57.4 1.3E+02 0.0029 26.3 14.6 148 213-374 55-204 (268)
227 COG0757 AroQ 3-dehydroquinate 56.6 50 0.0011 26.3 6.2 89 185-273 32-138 (146)
228 PRK05472 redox-sensing transcr 56.4 1.3E+02 0.0029 25.9 11.0 99 152-252 64-185 (213)
229 PF01936 NYN: NYN domain; Int 56.1 41 0.00089 26.6 6.2 67 152-219 75-144 (146)
230 cd06167 LabA_like LabA_like pr 54.2 63 0.0014 25.8 7.1 66 151-217 78-146 (149)
231 PF10686 DUF2493: Protein of u 53.8 73 0.0016 22.2 8.0 58 141-200 3-62 (71)
232 PF12038 DUF3524: Domain of un 53.5 30 0.00065 28.6 4.8 80 22-105 52-131 (168)
233 PF00533 BRCT: BRCA1 C Terminu 53.5 25 0.00055 24.2 4.1 66 170-244 6-72 (78)
234 PRK10840 transcriptional regul 53.4 1.4E+02 0.0031 25.4 10.4 104 172-276 3-126 (216)
235 PRK00048 dihydrodipicolinate r 52.6 58 0.0013 29.1 7.1 43 205-247 52-94 (257)
236 COG2247 LytB Putative cell wal 51.7 1.3E+02 0.0029 27.7 9.0 74 170-245 75-163 (337)
237 COG1692 Calcineurin-like phosp 51.2 1.3E+02 0.0028 26.7 8.5 100 143-245 2-115 (266)
238 PF12738 PTCB-BRCT: twin BRCT 49.3 21 0.00046 23.8 2.9 60 174-244 2-62 (63)
239 cd06282 PBP1_GntR_like_2 Ligan 49.3 1.8E+02 0.0039 25.3 14.2 59 213-276 55-114 (266)
240 KOG4131 Ngg1-interacting facto 49.0 57 0.0012 28.6 6.0 91 142-247 144-237 (272)
241 cd01539 PBP1_GGBP Periplasmic 47.7 1.7E+02 0.0037 26.5 9.7 42 333-374 186-228 (303)
242 cd06309 PBP1_YtfQ_like Peripla 47.5 2E+02 0.0043 25.3 13.2 41 334-374 171-212 (273)
243 PF00852 Glyco_transf_10: Glyc 47.5 82 0.0018 29.7 7.5 91 196-293 202-310 (349)
244 PRK11891 aspartate carbamoyltr 47.4 2.7E+02 0.0059 27.1 11.0 122 94-222 183-317 (429)
245 KOG3185 Translation initiation 47.4 28 0.00061 29.3 3.7 65 213-277 10-91 (245)
246 PF01220 DHquinase_II: Dehydro 47.3 39 0.00085 27.1 4.4 89 185-273 32-138 (140)
247 PF06925 MGDG_synth: Monogalac 46.7 14 0.0003 30.6 2.0 70 19-108 79-152 (169)
248 COG0439 AccC Biotin carboxylas 46.2 2.1E+02 0.0046 28.0 10.2 113 150-276 57-187 (449)
249 TIGR01361 DAHP_synth_Bsub phos 45.8 1.9E+02 0.0042 25.9 9.3 100 145-245 27-140 (260)
250 cd01750 GATase1_CobQ Type 1 gl 44.7 96 0.0021 26.3 7.0 69 175-247 3-82 (194)
251 PLN02696 1-deoxy-D-xylulose-5- 44.4 92 0.002 30.4 7.3 87 153-245 92-181 (454)
252 KOG0780 Signal recognition par 44.3 2.9E+02 0.0064 26.5 10.2 161 142-304 155-342 (483)
253 cd06274 PBP1_FruR Ligand bindi 44.2 2.2E+02 0.0047 24.9 15.1 148 213-375 55-206 (264)
254 PRK06718 precorrin-2 dehydroge 43.7 1.1E+02 0.0024 26.2 7.2 71 173-247 34-104 (202)
255 PF10649 DUF2478: Protein of u 43.7 34 0.00074 28.2 3.8 34 213-246 93-132 (159)
256 COG1887 TagB Putative glycosyl 43.4 3.1E+02 0.0066 26.3 12.2 132 138-279 205-356 (388)
257 TIGR00243 Dxr 1-deoxy-D-xylulo 43.3 1E+02 0.0022 29.5 7.2 89 151-245 34-125 (389)
258 cd06295 PBP1_CelR Ligand bindi 43.2 2.3E+02 0.005 24.9 13.8 60 213-277 64-124 (275)
259 TIGR00670 asp_carb_tr aspartat 43.2 2.7E+02 0.0058 25.6 12.6 121 94-223 96-226 (301)
260 PRK05718 keto-hydroxyglutarate 41.8 2E+02 0.0043 25.0 8.4 80 160-243 54-134 (212)
261 cd06284 PBP1_LacI_like_6 Ligan 41.7 2.4E+02 0.0051 24.5 14.3 60 213-277 55-114 (267)
262 TIGR01283 nifE nitrogenase mol 41.3 3.5E+02 0.0077 26.5 15.0 111 152-276 167-295 (456)
263 PF13241 NAD_binding_7: Putati 41.2 88 0.0019 23.4 5.5 39 209-247 56-95 (103)
264 PF11238 DUF3039: Protein of u 40.7 23 0.0005 23.5 1.9 15 228-242 15-29 (58)
265 cd06290 PBP1_LacI_like_9 Ligan 40.3 2.5E+02 0.0054 24.4 14.3 47 230-279 70-116 (265)
266 cd06312 PBP1_ABC_sugar_binding 40.3 2.6E+02 0.0056 24.6 14.2 39 334-372 170-208 (271)
267 cd06267 PBP1_LacI_sugar_bindin 39.6 2.5E+02 0.0053 24.2 14.8 60 213-276 55-114 (264)
268 PF09949 DUF2183: Uncharacteri 39.3 93 0.002 23.4 5.3 39 160-198 52-92 (100)
269 PF04430 DUF498: Protein of un 38.4 55 0.0012 24.9 4.0 41 161-201 42-86 (110)
270 cd01538 PBP1_ABC_xylose_bindin 38.3 2.9E+02 0.0063 24.6 10.1 34 213-246 55-89 (288)
271 COG1519 KdtA 3-deoxy-D-manno-o 37.8 3.4E+02 0.0074 26.2 9.8 96 143-245 52-154 (419)
272 COG2327 WcaK Polysaccharide py 37.8 3.7E+02 0.0081 25.7 13.9 101 173-278 241-352 (385)
273 cd06291 PBP1_Qymf_like Ligand 37.5 2.8E+02 0.006 24.1 12.4 41 334-374 160-200 (265)
274 PRK09590 celB cellobiose phosp 37.5 88 0.0019 23.7 4.9 70 175-245 5-83 (104)
275 cd06279 PBP1_LacI_like_3 Ligan 37.4 2.9E+02 0.0064 24.4 14.6 61 212-277 55-115 (283)
276 PRK13302 putative L-aspartate 37.2 2.6E+02 0.0057 25.1 8.9 71 171-246 30-100 (271)
277 COG0062 Uncharacterized conser 37.1 1.1E+02 0.0023 26.5 5.9 100 141-247 50-161 (203)
278 CHL00067 rps2 ribosomal protei 36.6 3E+02 0.0064 24.2 8.9 30 215-245 163-192 (230)
279 cd06305 PBP1_methylthioribose_ 36.1 3E+02 0.0064 24.1 15.1 60 213-275 55-115 (273)
280 cd05014 SIS_Kpsf KpsF-like pro 35.3 1.2E+02 0.0025 23.4 5.6 72 174-245 2-82 (128)
281 cd01541 PBP1_AraR Ligand-bindi 35.3 3.1E+02 0.0067 24.0 14.3 42 333-374 169-210 (273)
282 PF04413 Glycos_transf_N: 3-De 35.0 2.1E+02 0.0044 24.2 7.4 97 143-245 24-126 (186)
283 PRK12311 rpsB 30S ribosomal pr 34.6 3.5E+02 0.0076 25.3 9.3 30 215-245 154-183 (326)
284 PRK15438 erythronate-4-phospha 34.6 1.8E+02 0.0038 27.9 7.5 77 171-247 115-210 (378)
285 PRK15424 propionate catabolism 34.5 3.1E+02 0.0068 27.6 9.6 98 159-275 96-194 (538)
286 PRK13398 3-deoxy-7-phosphohept 34.4 3.5E+02 0.0076 24.4 11.7 99 144-245 28-142 (266)
287 PF00205 TPP_enzyme_M: Thiamin 34.3 1.6E+02 0.0035 23.1 6.4 46 175-220 15-84 (137)
288 cd00316 Oxidoreductase_nitroge 34.3 2.2E+02 0.0049 27.0 8.5 92 152-245 126-232 (399)
289 PF03435 Saccharop_dh: Sacchar 34.3 3E+02 0.0064 26.1 9.3 72 171-245 21-99 (386)
290 cd01967 Nitrogenase_MoFe_alpha 34.2 4.2E+02 0.0092 25.3 15.9 112 151-276 133-258 (406)
291 COG0673 MviM Predicted dehydro 33.8 1.7E+02 0.0038 26.9 7.5 67 175-245 30-99 (342)
292 COG1879 RbsB ABC-type sugar tr 33.7 3.3E+02 0.0072 24.8 9.3 150 212-373 90-245 (322)
293 cd06280 PBP1_LacI_like_4 Ligan 33.4 3.2E+02 0.007 23.7 15.5 144 214-375 56-200 (263)
294 cd06313 PBP1_ABC_sugar_binding 33.3 3.4E+02 0.0073 23.9 9.2 39 333-371 169-207 (272)
295 PF02302 PTS_IIB: PTS system, 32.7 1.1E+02 0.0023 21.9 4.7 50 175-224 3-58 (90)
296 PRK08673 3-deoxy-7-phosphohept 32.6 4.2E+02 0.0092 24.8 10.1 98 144-245 94-208 (335)
297 PF01012 ETF: Electron transfe 32.4 2.2E+02 0.0047 23.2 7.1 91 154-244 15-121 (164)
298 cd06324 PBP1_ABC_sugar_binding 32.2 3.8E+02 0.0082 24.2 13.2 42 333-374 188-229 (305)
299 TIGR00557 pdxA 4-hydroxythreon 32.0 1.5E+02 0.0031 27.7 6.3 115 153-274 173-317 (320)
300 PF01081 Aldolase: KDPG and KH 31.8 2.4E+02 0.0051 24.2 7.2 79 160-242 47-126 (196)
301 PLN02929 NADH kinase 31.7 2.1E+02 0.0046 26.4 7.2 91 185-277 37-138 (301)
302 PF05014 Nuc_deoxyrib_tr: Nucl 31.6 63 0.0014 24.6 3.4 41 209-249 57-101 (113)
303 TIGR01768 GGGP-family geranylg 31.6 79 0.0017 27.7 4.3 72 148-223 4-81 (223)
304 PRK13181 hisH imidazole glycer 31.5 3.2E+02 0.007 23.1 8.2 60 184-247 12-82 (199)
305 cd01542 PBP1_TreR_like Ligand- 31.4 3.4E+02 0.0074 23.4 13.2 58 213-277 55-113 (259)
306 TIGR02853 spore_dpaA dipicolin 31.4 3.7E+02 0.0079 24.5 8.9 33 209-241 205-237 (287)
307 PRK02746 pdxA 4-hydroxythreoni 31.4 2.4E+02 0.0051 26.6 7.6 73 198-275 245-338 (345)
308 PF02826 2-Hacid_dh_C: D-isome 31.2 1.9E+02 0.004 24.1 6.5 74 173-246 37-129 (178)
309 PLN02527 aspartate carbamoyltr 30.9 4.3E+02 0.0093 24.4 12.8 121 94-222 97-227 (306)
310 PRK05749 3-deoxy-D-manno-octul 30.3 4.1E+02 0.0089 25.4 9.7 99 142-245 52-155 (425)
311 PRK03743 pdxA 4-hydroxythreoni 30.1 1.8E+02 0.0038 27.2 6.6 73 198-275 240-325 (332)
312 TIGR01658 EYA-cons_domain eyes 29.8 1.4E+02 0.0031 26.5 5.5 34 160-196 216-251 (274)
313 COG0052 RpsB Ribosomal protein 29.7 2.2E+02 0.0047 25.4 6.6 18 228-245 170-187 (252)
314 PRK02261 methylaspartate mutas 29.5 2.9E+02 0.0063 22.0 8.2 65 143-208 56-125 (137)
315 PRK11303 DNA-binding transcrip 29.3 4.4E+02 0.0094 23.9 17.3 64 213-279 117-180 (328)
316 smart00292 BRCT breast cancer 29.0 1.8E+02 0.0039 19.4 6.4 66 171-244 4-71 (80)
317 TIGR00036 dapB dihydrodipicoli 29.0 1.7E+02 0.0038 26.2 6.3 42 206-247 61-102 (266)
318 PRK08306 dipicolinate synthase 29.0 1.9E+02 0.004 26.5 6.6 70 172-241 152-238 (296)
319 PRK13288 pyrophosphatase PpaX; 28.8 3.6E+02 0.0078 22.8 8.4 112 152-271 83-211 (214)
320 COG4109 Predicted transcriptio 28.8 1.6E+02 0.0034 27.8 5.8 95 173-272 115-218 (432)
321 cd01965 Nitrogenase_MoFe_beta_ 28.6 4.3E+02 0.0092 25.6 9.4 92 152-245 131-253 (428)
322 cd05125 Mth938_2P1-like Mth938 28.6 1.7E+02 0.0038 22.5 5.3 42 161-202 43-88 (114)
323 TIGR01454 AHBA_synth_RP 3-amin 28.2 3.6E+02 0.0078 22.6 8.1 115 149-270 73-203 (205)
324 TIGR00640 acid_CoA_mut_C methy 28.2 3E+02 0.0065 21.7 10.5 95 180-274 13-127 (132)
325 PRK00232 pdxA 4-hydroxythreoni 27.9 2E+02 0.0042 27.0 6.4 114 154-274 182-324 (332)
326 PRK10310 PTS system galactitol 27.6 1.1E+02 0.0025 22.5 4.1 48 175-222 6-59 (94)
327 PF03447 NAD_binding_3: Homose 27.4 1.1E+02 0.0024 23.3 4.2 43 205-247 49-93 (117)
328 PRK09444 pntB pyridine nucleot 27.3 3E+02 0.0064 26.9 7.6 64 209-272 377-460 (462)
329 COG1432 Uncharacterized conser 27.2 2.8E+02 0.006 23.3 6.9 69 152-221 92-161 (181)
330 PRK08306 dipicolinate synthase 27.1 3E+02 0.0065 25.2 7.6 73 173-245 3-102 (296)
331 PF11965 DUF3479: Domain of un 26.7 3E+02 0.0066 22.8 6.7 67 209-275 53-125 (164)
332 PF00185 OTCace: Aspartate/orn 26.6 3.5E+02 0.0077 22.0 7.9 74 141-223 2-83 (158)
333 PRK05312 pdxA 4-hydroxythreoni 26.6 2.1E+02 0.0045 26.8 6.4 73 198-275 245-330 (336)
334 cd06306 PBP1_TorT-like TorT-li 26.5 4.4E+02 0.0096 23.1 9.7 39 333-372 170-208 (268)
335 PF04392 ABC_sub_bind: ABC tra 26.1 4.9E+02 0.011 23.5 9.8 99 153-257 114-228 (294)
336 PRK13396 3-deoxy-7-phosphohept 26.1 5.7E+02 0.012 24.2 11.1 98 143-245 102-216 (352)
337 PRK12464 1-deoxy-D-xylulose 5- 25.8 2.7E+02 0.0059 26.6 7.1 88 151-245 29-118 (383)
338 cd01391 Periplasmic_Binding_Pr 25.6 4.1E+02 0.0089 22.4 10.4 63 213-276 58-121 (269)
339 TIGR01761 thiaz-red thiazoliny 25.4 4.1E+02 0.0089 25.0 8.3 91 141-245 3-98 (343)
340 cd06294 PBP1_ycjW_transcriptio 25.4 4.5E+02 0.0097 22.8 14.7 43 333-375 169-211 (270)
341 COG2204 AtoC Response regulato 25.3 6.3E+02 0.014 24.9 9.6 107 173-279 5-125 (464)
342 TIGR02634 xylF D-xylose ABC tr 25.3 5.1E+02 0.011 23.4 9.9 41 332-372 168-209 (302)
343 PRK01231 ppnK inorganic polyph 25.1 5.4E+02 0.012 23.6 8.8 35 235-277 84-119 (295)
344 cd06283 PBP1_RegR_EndR_KdgR_li 24.9 4.5E+02 0.0098 22.7 15.3 59 213-276 55-114 (267)
345 COG0111 SerA Phosphoglycerate 24.8 3.2E+02 0.0068 25.5 7.3 67 172-238 142-227 (324)
346 cd06321 PBP1_ABC_sugar_binding 24.7 4.7E+02 0.01 22.8 13.1 60 213-276 57-117 (271)
347 PRK08374 homoserine dehydrogen 24.5 5.2E+02 0.011 24.1 8.8 40 207-246 83-124 (336)
348 PF01973 MAF_flag10: Protein o 24.5 3.9E+02 0.0085 21.8 8.2 79 172-252 24-108 (170)
349 PRK08192 aspartate carbamoyltr 24.3 6E+02 0.013 23.9 11.7 122 94-222 101-235 (338)
350 PRK00676 hemA glutamyl-tRNA re 24.1 3.4E+02 0.0074 25.5 7.4 131 170-304 172-318 (338)
351 PF03853 YjeF_N: YjeF-related 24.0 4.1E+02 0.0089 21.9 9.7 102 141-247 26-141 (169)
352 PRK06015 keto-hydroxyglutarate 23.9 4.7E+02 0.01 22.5 8.8 78 160-241 43-121 (201)
353 PRK13304 L-aspartate dehydroge 23.9 2.4E+02 0.0052 25.3 6.3 69 172-246 26-94 (265)
354 TIGR02536 eut_hyp ethanolamine 23.5 3.5E+02 0.0075 23.4 6.8 38 210-247 50-100 (207)
355 PF07801 DUF1647: Protein of u 23.5 4E+02 0.0086 21.5 7.4 65 143-208 61-126 (142)
356 PF06345 Drf_DAD: DRF Autoregu 23.2 66 0.0014 14.7 1.2 10 229-238 5-14 (15)
357 PRK11557 putative DNA-binding 23.1 5.4E+02 0.012 22.9 8.6 72 174-245 130-210 (278)
358 PRK00994 F420-dependent methyl 23.0 3E+02 0.0065 24.4 6.1 38 142-183 5-42 (277)
359 PRK06719 precorrin-2 dehydroge 22.7 4.2E+02 0.0092 21.5 7.1 36 210-245 67-102 (157)
360 PF13478 XdhC_C: XdhC Rossmann 22.7 1.5E+02 0.0032 23.6 4.2 30 175-204 1-30 (136)
361 COG3473 Maleate cis-trans isom 22.7 5.2E+02 0.011 22.5 8.1 29 216-246 183-213 (238)
362 cd06319 PBP1_ABC_sugar_binding 22.6 5.2E+02 0.011 22.5 14.1 40 333-372 171-210 (277)
363 TIGR01182 eda Entner-Doudoroff 22.6 5E+02 0.011 22.3 8.9 79 159-241 46-125 (204)
364 TIGR02329 propionate_PrpR prop 22.5 7E+02 0.015 25.1 9.7 98 159-275 86-184 (526)
365 PF02233 PNTB: NAD(P) transhyd 22.4 2.3E+02 0.005 27.8 6.0 130 143-272 310-461 (463)
366 PF03284 PHZA_PHZB: Phenazine 22.0 46 0.00099 26.7 1.0 24 154-177 62-85 (162)
367 PRK10360 DNA-binding transcrip 21.9 4.4E+02 0.0095 21.4 10.5 102 174-276 3-118 (196)
368 PRK05279 N-acetylglutamate syn 21.8 7E+02 0.015 24.2 9.5 57 141-201 26-83 (441)
369 PRK13225 phosphoglycolate phos 21.7 5.9E+02 0.013 22.9 8.8 119 149-275 140-272 (273)
370 cd01540 PBP1_arabinose_binding 21.7 3E+02 0.0065 24.3 6.6 33 213-245 54-87 (289)
371 PRK03946 pdxA 4-hydroxythreoni 21.7 4.3E+02 0.0092 24.5 7.3 73 199-275 216-302 (307)
372 KOG2501 Thioredoxin, nucleored 21.6 3.9E+02 0.0084 22.0 6.3 82 141-222 34-119 (157)
373 cd05566 PTS_IIB_galactitol PTS 21.5 2.3E+02 0.0051 20.1 4.8 50 175-224 4-59 (89)
374 PF06283 ThuA: Trehalose utili 21.4 2.4E+02 0.0053 24.2 5.7 59 187-245 24-89 (217)
375 cd01545 PBP1_SalR Ligand-bindi 21.1 5.4E+02 0.012 22.2 13.7 61 213-276 56-116 (270)
376 cd05312 NAD_bind_1_malic_enz N 20.7 6.2E+02 0.013 23.0 8.1 98 141-245 25-140 (279)
377 PRK05928 hemD uroporphyrinogen 20.5 4.6E+02 0.0099 22.6 7.4 118 155-274 110-248 (249)
378 PRK10017 colanic acid biosynth 20.5 7.9E+02 0.017 23.9 10.5 41 144-184 3-45 (426)
379 TIGR02964 xanthine_xdhC xanthi 20.4 1.4E+02 0.003 26.6 3.9 36 170-205 98-133 (246)
380 PRK01909 pdxA 4-hydroxythreoni 20.4 3.3E+02 0.0071 25.5 6.4 73 198-275 236-321 (329)
381 cd01575 PBP1_GntR Ligand-bindi 20.4 5.6E+02 0.012 22.1 15.2 42 333-374 163-204 (268)
382 PRK06487 glycerate dehydrogena 20.1 3.5E+02 0.0076 25.0 6.7 76 172-247 148-236 (317)
383 PRK06932 glycerate dehydrogena 20.1 3.6E+02 0.0079 24.9 6.8 76 172-247 147-236 (314)
384 cd01972 Nitrogenase_VnfE_like 20.1 5.6E+02 0.012 24.8 8.4 92 152-245 136-245 (426)
No 1
>PLN02501 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=6.9e-67 Score=502.19 Aligned_cols=378 Identities=52% Similarity=0.930 Sum_probs=335.3
Q ss_pred CCcccccccccccceeecccccccCCCCCCcEEEEcCCcchhhhhcccccccccCcEEEEeccChHHHHHHhhcchHHHH
Q 016975 1 MGLLLVQFAIDKRSILGVGDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAF 80 (379)
Q Consensus 1 ~~f~~~~~~~~~~~i~~~~~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~~~~ 80 (379)
|.|||+||+.+++||+|++++.+.|.+++|||||+++|.+++|++++.+|+++++|+|.++||++..|..+++.+.+..+
T Consensus 406 i~fYpg~~~~~~~SI~p~gdI~~~L~~f~PDVVHLatP~~LGw~~~Glr~ArKl~PVVasyHTny~eYl~~y~~g~L~~~ 485 (794)
T PLN02501 406 ISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFNHVVGVVHTNYLEYIKREKNGALQAF 485 (794)
T ss_pred EEeecchhccCCccccchHHHHHHhhccCCCEEEECCchhhccHHHHHHHHHHcCCeEEEEeCCcHHHHhHhcchhHHHH
Confidence 68999999999999999999999999999999999999999999889999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHhcceEEEcChhhhhhhhccceeecccCCCCccCccccHHHhhcCCCCCcceEEEEEecccccCHHHHH
Q 016975 81 LLKYANSWLVDIYCHKVIRLSAATQEYANSIICNVHGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELL 160 (379)
Q Consensus 81 ~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~~i~~i~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li 160 (379)
+.++++.|+.++|||.|+++|..++++....+.++||||+++|.+..........+...+.+.++|+||+.+.||++.|+
T Consensus 486 llk~l~~~v~r~hcD~VIaPS~atq~L~~~vI~nVnGVDte~F~P~~r~~~~r~lgi~~~~kgiLfVGRLa~EKGld~LL 565 (794)
T PLN02501 486 FVKHINNWVTRAYCHKVLRLSAATQDLPKSVICNVHGVNPKFLKIGEKVAEERELGQQAFSKGAYFLGKMVWAKGYRELI 565 (794)
T ss_pred HHHHHHHHHHHhhCCEEEcCCHHHHHhcccceeecccccccccCCcchhHHHHhcCCccccCceEEEEcccccCCHHHHH
Confidence 88899999999999999999999888777777888999999999876644443333333345689999999999999999
Q ss_pred HHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeE
Q 016975 161 ELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIV 240 (379)
Q Consensus 161 ~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PV 240 (379)
+++..+..+.++++|+|+|+|++.+++++.++++++++.|+|+.++..++|+.+|+||+||.+|+||++++||||||+||
T Consensus 566 eAla~L~~~~pnvrLvIVGDGP~reeLe~la~eLgL~V~FLG~~dd~~~lyasaDVFVlPS~sEgFGlVlLEAMA~GlPV 645 (794)
T PLN02501 566 DLLAKHKNELDGFNLDVFGNGEDAHEVQRAAKRLDLNLNFLKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFV 645 (794)
T ss_pred HHHHHHHhhCCCeEEEEEcCCccHHHHHHHHHHcCCEEEecCCCCCHHHHHHhCCEEEECCCcccchHHHHHHHHcCCCE
Confidence 99999988788999999999999999999999999999999998888889999999999999999999999999999999
Q ss_pred EecCCCcccccccCCCEEEeCCHHHHHHHHHHHHhCCCCCCcHHHHhcCCHHHHHHHHHHHHhccccccc------CCCC
Q 016975 241 VCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEEPALPTEAQRHQLSWESATERFLQVAELDQAVVK------KPSK 314 (379)
Q Consensus 241 I~t~~g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~sw~~~~~~~~~~~~~~~~~~~------~~~~ 314 (379)
|+++.|+.+++.++.+|+++.|+++++++|.+++.+++.+.....+..+||+.+++++++.-++.+..+. ....
T Consensus 646 VATd~pG~e~V~~g~nGll~~D~EafAeAI~~LLsd~~~rl~~~a~~~~SWeAaadrLle~~~~~~~~~~~~~~~~~~~~ 725 (794)
T PLN02501 646 VCADHPSNEFFRSFPNCLTYKTSEDFVAKVKEALANEPQPLTPEQRYNLSWEAATQRFMEYSDLDKVLNNGDDAKLSKSG 725 (794)
T ss_pred EEecCCCCceEeecCCeEecCCHHHHHHHHHHHHhCchhhhHHHHHhhCCHHHHHHHHHHhhcccccccccccccccccc
Confidence 9999987777888899999899999999999999988765555556799999999999999987643222 1112
Q ss_pred CCCccccccchhHHHhHHHHHHHHHHHhcCCcccceeecccCCCCCchHHHHHHhCCCCCCCCC
Q 016975 315 SPSKHFASTSLNLKKNMEEASAYVHFLASGFETSRRAFGAIPGSLHPDEELCKELGLVTPMSKQ 378 (379)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (379)
.+...+.+...+|.+++|+++++.|++++|+|.+|+.||+.||++++++|+|+++||++|.+++
T Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~~g~~~~r~~~ga~~~~~~~~~~~~~~~~~~~~~~~~ 789 (794)
T PLN02501 726 GKSITKSVSMPNLSEMVDGGLAFAHYCLTGNEFLRLCTGAIPGTRDYDKQHCKDLHLLPPHVEN 789 (794)
T ss_pred ccchhhhccCCcHHHHhhhHHHHHHHHhhccHHHHHHhcCCCCCCCcCHHHHHhcCCCCCCCCC
Confidence 2233344555589999999999999999999999999999999999999999999999999876
No 2
>PLN02846 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=2.5e-62 Score=465.59 Aligned_cols=375 Identities=79% Similarity=1.242 Sum_probs=326.8
Q ss_pred CCcccccccccccceeecccccccCCCCCCcEEEEcCCcchhhhhcccccccccCcEEEEeccChHHHHHHhhcchHHHH
Q 016975 1 MGLLLVQFAIDKRSILGVGDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAF 80 (379)
Q Consensus 1 ~~f~~~~~~~~~~~i~~~~~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~~~~ 80 (379)
+-|||+||+..++++++..++.+.+++++|||||+++|.+++|+.++.+|.++++++|.++|+++.+|..+++.+....+
T Consensus 88 ~p~yp~r~~~~~r~~~~~~~i~~~l~~~~pDVIHv~tP~~LG~~~~g~~~~~k~~~vV~tyHT~y~~Y~~~~~~g~~~~~ 167 (462)
T PLN02846 88 IKFYPGKFSTDKRSILPVGDISETIPDEEADIAVLEEPEHLTWYHHGKRWKTKFRLVIGIVHTNYLEYVKREKNGRVKAF 167 (462)
T ss_pred cccCcccccccccccCChHHHHHHHHhcCCCEEEEcCchhhhhHHHHHHHHhcCCcEEEEECCChHHHHHHhccchHHHH
Confidence 35799999998999999999999999999999999999999998678899988889999999999999987766666778
Q ss_pred HHHHHHHHHHHHhcceEEEcChhhhhhhhccceeecccCCCCccCccccHHHhhcCCCCCcceEEEEEecccccCHHHHH
Q 016975 81 LLKYANSWLVDIYCHKVIRLSAATQEYANSIICNVHGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELL 160 (379)
Q Consensus 81 ~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~~i~~i~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li 160 (379)
+.+.+++++.+.+||.++++|..++++.+..+.+++|||+.+|.+..........+.....+.++|+||+.+.||++.||
T Consensus 168 l~~~~~~~~~r~~~d~vi~pS~~~~~l~~~~i~~v~GVd~~~f~~~~~~~~~~~~~~~~~~~~~l~vGRL~~eK~~~~Li 247 (462)
T PLN02846 168 LLKYINSWVVDIYCHKVIRLSAATQDYPRSIICNVHGVNPKFLEIGKLKLEQQKNGEQAFTKGAYYIGKMVWSKGYKELL 247 (462)
T ss_pred HHHHHHHHHHHHhcCEEEccCHHHHHHhhCEEecCceechhhcCCCcccHhhhcCCCCCcceEEEEEecCcccCCHHHHH
Confidence 88889999888889999999998888776666667999999888775542211111112245799999999999999999
Q ss_pred HHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeE
Q 016975 161 ELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIV 240 (379)
Q Consensus 161 ~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PV 240 (379)
+++..+.+..++++|+|+|+|++.+++++.+++++++++++++..+.+++|+.+|+||+||.+|+||++++||||||+||
T Consensus 248 ~a~~~l~~~~~~~~l~ivGdGp~~~~L~~~a~~l~l~~~vf~G~~~~~~~~~~~DvFv~pS~~Et~g~v~lEAmA~G~PV 327 (462)
T PLN02846 248 KLLHKHQKELSGLEVDLYGSGEDSDEVKAAAEKLELDVRVYPGRDHADPLFHDYKVFLNPSTTDVVCTTTAEALAMGKIV 327 (462)
T ss_pred HHHHHHHhhCCCeEEEEECCCccHHHHHHHHHhcCCcEEEECCCCCHHHHHHhCCEEEECCCcccchHHHHHHHHcCCcE
Confidence 99999988788999999999999999999999999877777666666789999999999999999999999999999999
Q ss_pred EecCCCcccccccCCCEEEeCCHHHHHHHHHHHHhCCCCCCcHHHHhcCCHHHHHHHHHHHHhcccccccCCCCCCCccc
Q 016975 241 VCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEEPALPTEAQRHQLSWESATERFLQVAELDQAVVKKPSKSPSKHF 320 (379)
Q Consensus 241 I~t~~g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~sw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (379)
|+++.++.+++.++.||++++|.+++++++.+++++++.+++...++.|||+.++++++++|+..+..+..+.+....++
T Consensus 328 Va~~~~~~~~v~~~~ng~~~~~~~~~a~ai~~~l~~~~~~~~~~a~~~~SWe~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 407 (462)
T PLN02846 328 VCANHPSNEFFKQFPNCRTYDDGKGFVRATLKALAEEPAPLTDAQRHELSWEAATERFLRVADLDLPSSAKPNKSSLKNF 407 (462)
T ss_pred EEecCCCcceeecCCceEecCCHHHHHHHHHHHHccCchhHHHHHHHhCCHHHHHHHHHHHhccCCcCccccccccccch
Confidence 99999778999999999999999999999999999766666667778999999999999999998765554444444555
Q ss_pred cccchhHHHhHHHHHHHHHHHhcCCcccceeecccCCCCCchHHHHHHhCCCCCC
Q 016975 321 ASTSLNLKKNMEEASAYVHFLASGFETSRRAFGAIPGSLHPDEELCKELGLVTPM 375 (379)
Q Consensus 321 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 375 (379)
.+....|..++|++++++|++++|.|.+|++||++||++++++|+|+|+||++|.
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (462)
T PLN02846 408 MSTSPNLKKNMEDASAYLHNVASGFETSRRAFGAIPGSLQPDEQQCKELGLALQT 462 (462)
T ss_pred hccCccHhhhhhhHHHHHHHHhhhhHHHHHHccCCCCCCCCCHHHHHhcCCCCCC
Confidence 5555678899999999999999999999999999999999999999999999883
No 3
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=100.00 E-value=1.6e-34 Score=282.42 Aligned_cols=278 Identities=17% Similarity=0.146 Sum_probs=207.7
Q ss_pred cccccCCCCCCcEEEEcCCcchhhhhcccccccccC-cEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEE
Q 016975 20 DISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVI 98 (379)
Q Consensus 20 ~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~-~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 98 (379)
.+.+.+.+.+||+||++.+....+. +..+.+..+ |+|.++|++...+............+.. +.+++ ...+|.++
T Consensus 135 ~l~~~i~~~kpDiIh~~~~~~~~~~--~~~~ak~~~ip~V~~~h~~~~~~~~~~~~~~~~~~~~~-~~r~~-~~~ad~ii 210 (465)
T PLN02871 135 RIISEVARFKPDLIHASSPGIMVFG--ALFYAKLLCVPLVMSYHTHVPVYIPRYTFSWLVKPMWD-IIRFL-HRAADLTL 210 (465)
T ss_pred HHHHHHHhCCCCEEEECCCchhHHH--HHHHHHHhCCCEEEEEecCchhhhhcccchhhHHHHHH-HHHHH-HhhCCEEE
Confidence 4566777889999999987655443 112233334 9999999887665532222222222221 12221 12379999
Q ss_pred EcChhhhhhhh-------ccceee-cccCCCCccCccccHHHh-hc-CCCCCcceEEEEEecccccCHHHHHHHHHHhHh
Q 016975 99 RLSAATQEYAN-------SIICNV-HGVNPKFLEIGKKKKEQQ-QN-GTHAFAKGAYYIGKMVWSKGYKELLELLDDHQK 168 (379)
Q Consensus 99 ~~S~~~~~~~~-------~~i~~i-~gvd~~~~~~~~~~~~~~-~~-~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~ 168 (379)
++|+..++... .++.++ ||+|.+.|.+.......+ .. ...++++.|+|+||+.+.||++.++++++.+
T Consensus 211 ~~S~~~~~~l~~~~~~~~~kv~vi~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~i~~vGrl~~~K~~~~li~a~~~~-- 288 (465)
T PLN02871 211 VTSPALGKELEAAGVTAANRIRVWNKGVDSESFHPRFRSEEMRARLSGGEPEKPLIVYVGRLGAEKNLDFLKRVMERL-- 288 (465)
T ss_pred ECCHHHHHHHHHcCCCCcCeEEEeCCccCccccCCccccHHHHHHhcCCCCCCeEEEEeCCCchhhhHHHHHHHHHhC--
Confidence 99988765443 233444 899998886643322221 11 1234567899999999999999999998764
Q ss_pred hcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHH--HHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCC
Q 016975 169 ELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHP 246 (379)
Q Consensus 169 ~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~--~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g 246 (379)
++++|+|+|+|+..+++++++++ .++.|+|.+++++ .+|+.||+||+||..|++|++++||||||+|||+|+.|
T Consensus 289 --~~~~l~ivG~G~~~~~l~~~~~~--~~V~f~G~v~~~ev~~~~~~aDv~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g 364 (465)
T PLN02871 289 --PGARLAFVGDGPYREELEKMFAG--TPTVFTGMLQGDELSQAYASGDVFVMPSESETLGFVVLEAMASGVPVVAARAG 364 (465)
T ss_pred --CCcEEEEEeCChHHHHHHHHhcc--CCeEEeccCCHHHHHHHHHHCCEEEECCcccccCcHHHHHHHcCCCEEEcCCC
Confidence 68999999999998888888764 4789999998777 99999999999999999999999999999999999995
Q ss_pred c-cccccc---CCCEEEeC--CHHHHHHHHHHHHhCCCC--CCcHHHH---hcCCHHHHHHHHHH-HHhcccc
Q 016975 247 S-NDFFKQ---FPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQR---HQLSWESATERFLQ-VAELDQA 307 (379)
Q Consensus 247 ~-~e~i~~---~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~~~---~~~sw~~~~~~~~~-~~~~~~~ 307 (379)
+ .|++.+ +.+|++++ |+++++++|.++++++.. +++++++ ++|+|+.+++++++ .|+.+..
T Consensus 365 g~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~fsw~~~a~~l~~~~Y~~~~~ 437 (465)
T PLN02871 365 GIPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLADPELRERMGAAAREEVEKWDWRAATRKLRNEQYSAAIW 437 (465)
T ss_pred CcHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 5 888988 89999987 999999999999988764 4555433 78999999999998 7986653
No 4
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=100.00 E-value=3.1e-34 Score=275.00 Aligned_cols=264 Identities=14% Similarity=0.103 Sum_probs=200.2
Q ss_pred cccCCCCCCcEEEEcCCcchhhhhccccccc--cc-CcEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEE
Q 016975 22 SEVIPDEVADIAVLEEPEHLTWFHHGKRWKT--KF-RYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVI 98 (379)
Q Consensus 22 ~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~--~~-~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 98 (379)
...+++.+||+||+|....-.... .... .. .+++.++|+.+..... .. ......+...+.+ +|.++
T Consensus 111 ~~~~~~~~~diihaH~~~~~~~~~---~~~~~~~~~~~~~~t~Hg~d~~~~~--~~----~~~~~~~~~~~~~--ad~vv 179 (406)
T PRK15427 111 AQVATPFVADVFIAHFGPAGVTAA---KLRELGVLRGKIATIFHGIDISSRE--VL----NHYTPEYQQLFRR--GDLML 179 (406)
T ss_pred hhhhccCCCCEEEEcCChHHHHHH---HHHHhCCCCCCeEEEEcccccccch--hh----hhhhHHHHHHHHh--CCEEE
Confidence 445567889999998753221111 1111 12 3678899976432111 00 0111112222222 59999
Q ss_pred EcChhhhhhhh------ccceee-cccCCCCccCccccHHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhhcC
Q 016975 99 RLSAATQEYAN------SIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELA 171 (379)
Q Consensus 99 ~~S~~~~~~~~------~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~ 171 (379)
++|+..++... +++.++ ||+|.+.|.+.... ...++..++|+||+.+.||++.+++++..++++.+
T Consensus 180 ~~S~~~~~~l~~~g~~~~ki~vi~nGvd~~~f~~~~~~-------~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~ 252 (406)
T PRK15427 180 PISDLWAGRLQKMGCPPEKIAVSRMGVDMTRFSPRPVK-------APATPLEIISVARLTEKKGLHVAIEACRQLKEQGV 252 (406)
T ss_pred ECCHHHHHHHHHcCCCHHHEEEcCCCCCHHHcCCCccc-------cCCCCeEEEEEeCcchhcCHHHHHHHHHHHHhhCC
Confidence 99987665432 234445 89998877543221 11234579999999999999999999999988888
Q ss_pred CcEEEEEcCCcChHHHHHHHHhcCC--eeEEecCCCCHH--HHHhhcCEEEecCCC------CcchhHHHHHHHcCCeEE
Q 016975 172 GLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPSTT------DVVCTTTAEALAMGKIVV 241 (379)
Q Consensus 172 ~~~l~i~G~g~~~~~l~~~~~~~~l--~v~~~g~~~~~~--~~~~~~dv~v~ps~~------E~~~~~~~EAma~G~PVI 241 (379)
+++++|+|+|+..+++++.++++++ ++.|.|.+++.+ ++|+.||+||+||.. ||+|++++||||||+|||
T Consensus 253 ~~~l~ivG~G~~~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI 332 (406)
T PRK15427 253 AFRYRILGIGPWERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVV 332 (406)
T ss_pred CEEEEEEECchhHHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEE
Confidence 9999999999999999999998886 688889999888 999999999999974 999999999999999999
Q ss_pred ecCCCc-ccccccCCCEEEeC--CHHHHHHHHHHHHh-CCCC--CCcHHHH----hcCCHHHHHHHHHHHHh
Q 016975 242 CANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALA-EEPA--LPTEAQR----HQLSWESATERFLQVAE 303 (379)
Q Consensus 242 ~t~~g~-~e~i~~~~~g~~~~--~~~~l~~~i~~~l~-~~~~--~~~~~~~----~~~sw~~~~~~~~~~~~ 303 (379)
+|+.|+ .|++.++.+|++++ |+++++++|.++++ ++.. +++.+++ ++|+|+.+++++.++|+
T Consensus 333 ~t~~~g~~E~v~~~~~G~lv~~~d~~~la~ai~~l~~~d~~~~~~~~~~ar~~v~~~f~~~~~~~~l~~~~~ 404 (406)
T PRK15427 333 STLHSGIPELVEADKSGWLVPENDAQALAQRLAAFSQLDTDELAPVVKRAREKVETDFNQQVINRELASLLQ 404 (406)
T ss_pred EeCCCCchhhhcCCCceEEeCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 999955 89999999999988 99999999999998 7654 5555443 88999999999999987
No 5
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=100.00 E-value=8.5e-34 Score=288.08 Aligned_cols=273 Identities=16% Similarity=0.124 Sum_probs=191.9
Q ss_pred CCcEEEEcCCcchhhhhcccccccccC-cEEEEeccChHHHHHH-hhcch-----H---HHHHHHHHHHHHHHHhcceEE
Q 016975 29 VADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKR-EKNGR-----L---QAFLLKYANSWLVDIYCHKVI 98 (379)
Q Consensus 29 ~~DvV~~~~p~~~~~~~~~~~~~~~~~-~vv~~~h~~~~~~~~~-~~~~~-----~---~~~~~~~~~~~~~~~~~d~vi 98 (379)
.|||||.|... .++. +....+.+. |+|.+.|+.-.....+ ...+. . .....+..........||.||
T Consensus 310 ~pDvIHaHyw~-sG~a--a~~L~~~lgVP~V~T~HSLgr~K~~~ll~~g~~~~~~~~~~y~~~~Ri~~Ee~~l~~Ad~VI 386 (1050)
T TIGR02468 310 WPYVIHGHYAD-AGDS--AALLSGALNVPMVLTGHSLGRDKLEQLLKQGRMSKEEINSTYKIMRRIEAEELSLDASEIVI 386 (1050)
T ss_pred CCCEEEECcch-HHHH--HHHHHHhhCCCEEEECccchhhhhhhhcccccccccccccccchHHHHHHHHHHHHhcCEEE
Confidence 49999999522 2222 334555555 9999999742111110 00010 0 000111111111222379999
Q ss_pred EcChhhhhh--------h---------------------hccceee-cccCCCCccCccccHH-----------------
Q 016975 99 RLSAATQEY--------A---------------------NSIICNV-HGVNPKFLEIGKKKKE----------------- 131 (379)
Q Consensus 99 ~~S~~~~~~--------~---------------------~~~i~~i-~gvd~~~~~~~~~~~~----------------- 131 (379)
+.|....+. . ..++.+| +|||++.|.|......
T Consensus 387 asT~qE~~eq~~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~~~~~~~~~~~~~~~ 466 (1050)
T TIGR02468 387 TSTRQEIEEQWGLYDGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGETEGNEEHPAKPDPPI 466 (1050)
T ss_pred EeCHHHHHHHHHHhccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccchhcccccccccccchh
Confidence 999654321 0 0144555 8999998877422110
Q ss_pred ---HhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhh--cCCcEEEEEcCCcCh-----------HHHHHHHHhcC
Q 016975 132 ---QQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKE--LAGLEVDLYGNGEDF-----------NQIQEAAEKLK 195 (379)
Q Consensus 132 ---~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~--~~~~~l~i~G~g~~~-----------~~l~~~~~~~~ 195 (379)
.......++++.|+|+||+.++||++.||+|+..+... .+++. +|+|++++. ..+++++++++
T Consensus 467 ~~~l~r~~~~pdkpvIL~VGRL~p~KGi~~LIeAf~~L~~l~~~~nL~-LIiG~gdd~d~l~~~~~~~l~~L~~li~~lg 545 (1050)
T TIGR02468 467 WSEIMRFFTNPRKPMILALARPDPKKNITTLVKAFGECRPLRELANLT-LIMGNRDDIDEMSSGSSSVLTSVLKLIDKYD 545 (1050)
T ss_pred hHHHHhhcccCCCcEEEEEcCCccccCHHHHHHHHHHhHhhccCCCEE-EEEecCchhhhhhccchHHHHHHHHHHHHhC
Confidence 11222356678999999999999999999999998743 34665 567877653 34667777777
Q ss_pred C--eeEEecCCCCHH--HHHhhc----CEEEecCCCCcchhHHHHHHHcCCeEEecCCCc-ccccccCCCEEEeC--CHH
Q 016975 196 I--VVRVYPGRDHAD--LIFHDY----KVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--DRN 264 (379)
Q Consensus 196 l--~v~~~g~~~~~~--~~~~~~----dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-~e~i~~~~~g~~~~--~~~ 264 (379)
+ +|.|.|.+++.+ ++|+.| |+||+||.+|+||++++||||||+|||+|+.|+ .|++.++.+|++++ |++
T Consensus 546 L~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG~~EII~~g~nGlLVdP~D~e 625 (1050)
T TIGR02468 546 LYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGGPVDIHRVLDNGLLVDPHDQQ 625 (1050)
T ss_pred CCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCCcHHHhccCCcEEEECCCCHH
Confidence 7 678889988777 899888 699999999999999999999999999999955 89999999999998 999
Q ss_pred HHHHHHHHHHhCCCC--CCcHHHH---hcCCHHHHHHHHHHHHhcc
Q 016975 265 GFVEATLKALAEEPA--LPTEAQR---HQLSWESATERFLQVAELD 305 (379)
Q Consensus 265 ~l~~~i~~~l~~~~~--~~~~~~~---~~~sw~~~~~~~~~~~~~~ 305 (379)
+|+++|.++++++.. .++.+++ ++|+|+.++++|++.|...
T Consensus 626 aLA~AL~~LL~Dpelr~~m~~~gr~~v~~FSWe~ia~~yl~~i~~~ 671 (1050)
T TIGR02468 626 AIADALLKLVADKQLWAECRQNGLKNIHLFSWPEHCKTYLSRIASC 671 (1050)
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 999999999998765 4555433 6799999999999988854
No 6
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=100.00 E-value=6.2e-33 Score=266.32 Aligned_cols=270 Identities=16% Similarity=0.120 Sum_probs=199.6
Q ss_pred cccccCCCCCCcEEEEcCCcchhhhhcccccccccC-cEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEE
Q 016975 20 DISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVI 98 (379)
Q Consensus 20 ~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~-~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 98 (379)
.+.+.+.+.+|||||++++....... +..+.+..+ |+|.+.|+.+.... ........+.++. ...+|.++
T Consensus 79 ~l~~~~~~~~~DiIh~~~~~~~~~~~-~~~~~~~~~~~~v~t~h~~~~~~~-------~~~~~~~~~~~~~-~~~~d~ii 149 (398)
T cd03796 79 LLRNILIRERITIVHGHQAFSALAHE-ALLHARTMGLKTVFTDHSLFGFAD-------ASSIHTNKLLRFS-LADVDHVI 149 (398)
T ss_pred HHHHHHHhcCCCEEEECCCCchHHHH-HHHHhhhcCCcEEEEecccccccc-------hhhHHhhHHHHHh-hccCCEEE
Confidence 35566667899999999865432110 112333334 88999987542100 0001111111221 12369999
Q ss_pred EcChhhhhhh-------hccceee-cccCCCCccCccccHHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhhc
Q 016975 99 RLSAATQEYA-------NSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKEL 170 (379)
Q Consensus 99 ~~S~~~~~~~-------~~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~ 170 (379)
++|....+.. .+++..+ ||+|.+.|.+.... ..++++.++|+||+.++||++.+++++..+.++.
T Consensus 150 ~~s~~~~~~~~~~~~~~~~k~~vi~ngvd~~~f~~~~~~-------~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~ 222 (398)
T cd03796 150 CVSHTSKENTVLRASLDPERVSVIPNAVDSSDFTPDPSK-------RDNDKITIVVISRLVYRKGIDLLVGIIPEICKKH 222 (398)
T ss_pred EecHhHhhHHHHHhCCChhhEEEEcCccCHHHcCCCccc-------CCCCceEEEEEeccchhcCHHHHHHHHHHHHhhC
Confidence 9998765422 2344455 89998777653321 2234678999999999999999999999998888
Q ss_pred CCcEEEEEcCCcChHHHHHHHHhcCC--eeEEecCCCCHH--HHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCC
Q 016975 171 AGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHP 246 (379)
Q Consensus 171 ~~~~l~i~G~g~~~~~l~~~~~~~~l--~v~~~g~~~~~~--~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g 246 (379)
++++|+|+|+|+..+.+++.+++.++ ++.|.|.+++.+ .+|+.+|++++||..|+||++++||||||+|||+|+.|
T Consensus 223 ~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~ad~~v~pS~~E~~g~~~~EAma~G~PVI~s~~g 302 (398)
T cd03796 223 PNVRFIIGGDGPKRILLEEMREKYNLQDRVELLGAVPHERVRDVLVQGHIFLNTSLTEAFCIAIVEAASCGLLVVSTRVG 302 (398)
T ss_pred CCEEEEEEeCCchHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhCCEEEeCChhhccCHHHHHHHHcCCCEEECCCC
Confidence 99999999999998889999988876 588889998777 99999999999999999999999999999999999995
Q ss_pred c-ccccccCCCEEEeC-CHHHHHHHHHHHHhCCCCC--CcH----HHHhcCCHHHHHHHHHHHHhccc
Q 016975 247 S-NDFFKQFPNCRTYD-DRNGFVEATLKALAEEPAL--PTE----AQRHQLSWESATERFLQVAELDQ 306 (379)
Q Consensus 247 ~-~e~i~~~~~g~~~~-~~~~l~~~i~~~l~~~~~~--~~~----~~~~~~sw~~~~~~~~~~~~~~~ 306 (379)
+ .|++.++. +++++ |+++++++|.+++++.... +.. ...++|||+.++++++++|+...
T Consensus 303 g~~e~i~~~~-~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~~l~ 369 (398)
T cd03796 303 GIPEVLPPDM-ILLAEPDVESIVRKLEEAISILRTGKHDPWSFHNRVKKMYSWEDVAKRTEKVYDRIL 369 (398)
T ss_pred CchhheeCCc-eeecCCCHHHHHHHHHHHHhChhhhhhHHHHHHHHHHhhCCHHHHHHHHHHHHHHHh
Confidence 5 88887764 44445 9999999999999875442 222 23388999999999999999654
No 7
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=5.9e-33 Score=264.35 Aligned_cols=276 Identities=12% Similarity=0.119 Sum_probs=198.4
Q ss_pred ccccccCCCCCCcEEEEcCCcchhhhhcccccccccCcE-EEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceE
Q 016975 19 GDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYV-VGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKV 97 (379)
Q Consensus 19 ~~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~~v-v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 97 (379)
..+.+++++.+|||||++++..+.... . .+... .|. +...|+...... .. ..+....+.++.. ..+|.+
T Consensus 71 ~~l~~~l~~~~~Divh~~~~~~~~~~~-~-~~~~~-~~~~i~~~h~~~~~~~--~~----~~~~~~~~~~~~~-~~~~~~ 140 (374)
T TIGR03088 71 PQLYRLLRQLRPDIVHTRNLAALEAQL-P-AALAG-VPARIHGEHGRDVFDL--DG----SNWKYRWLRRLYR-PLIHHY 140 (374)
T ss_pred HHHHHHHHHhCCCEEEEcchhHHHHHH-H-HHhcC-CCeEEEeecCcccccc--hh----hHHHHHHHHHHHH-hcCCeE
Confidence 356677888999999998764332211 0 11111 132 333333211000 00 0111222333321 226999
Q ss_pred EEcChhhhhhhh-------ccceee-cccCCCCccCccccH--HHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhH
Q 016975 98 IRLSAATQEYAN-------SIICNV-HGVNPKFLEIGKKKK--EQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQ 167 (379)
Q Consensus 98 i~~S~~~~~~~~-------~~i~~i-~gvd~~~~~~~~~~~--~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~ 167 (379)
+++|+.++++.. .++..+ ||+|.+.|.+..... .........++++++++||+.+.||++.+++++..+.
T Consensus 141 i~vs~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~ 220 (374)
T TIGR03088 141 VAVSRDLEDWLRGPVKVPPAKIHQIYNGVDTERFHPSRGDRSPILPPDFFADESVVVGTVGRLQAVKDQPTLVRAFALLV 220 (374)
T ss_pred EEeCHHHHHHHHHhcCCChhhEEEeccCccccccCCCccchhhhhHhhcCCCCCeEEEEEecCCcccCHHHHHHHHHHHH
Confidence 999988776543 233444 899988776543221 1112223445779999999999999999999999998
Q ss_pred hhcC----CcEEEEEcCCcChHHHHHHHHhcCC--eeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEE
Q 016975 168 KELA----GLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVV 241 (379)
Q Consensus 168 ~~~~----~~~l~i~G~g~~~~~l~~~~~~~~l--~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI 241 (379)
++.+ +++|+++|+|+..+++++.++++++ .+.|.|..++..++|+.||++|+||..||||++++|||+||+|||
T Consensus 221 ~~~~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~pS~~Eg~~~~~lEAma~G~Pvv 300 (374)
T TIGR03088 221 RQLPEGAERLRLVIVGDGPARGACEQMVRAAGLAHLVWLPGERDDVPALMQALDLFVLPSLAEGISNTILEAMASGLPVI 300 (374)
T ss_pred HhCcccccceEEEEecCCchHHHHHHHHHHcCCcceEEEcCCcCCHHHHHHhcCEEEeccccccCchHHHHHHHcCCCEE
Confidence 7654 7899999999998999999988876 466678766666999999999999999999999999999999999
Q ss_pred ecCCCc-ccccccCCCEEEeC--CHHHHHHHHHHHHhCCCC--CCcHHH----HhcCCHHHHHHHHHHHHhc
Q 016975 242 CANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQ----RHQLSWESATERFLQVAEL 304 (379)
Q Consensus 242 ~t~~g~-~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~~----~~~~sw~~~~~~~~~~~~~ 304 (379)
+|+.|+ .|++.++.+|++++ |+++++++|.++++++.. .++.++ .++|||+.+++++.++|+.
T Consensus 301 ~s~~~g~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~ 372 (374)
T TIGR03088 301 ATAVGGNPELVQHGVTGALVPPGDAVALARALQPYVSDPAARRAHGAAGRARAEQQFSINAMVAAYAGLYDQ 372 (374)
T ss_pred EcCCCCcHHHhcCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 999955 89999999999887 999999999999987654 344433 3799999999999999974
No 8
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=1.5e-32 Score=268.96 Aligned_cols=267 Identities=16% Similarity=0.148 Sum_probs=200.0
Q ss_pred CCCcEEEEcCCcchhhhhcccccccccC-cEEEEeccChHHHHHH----h--hcchHHHHHHHHHHHHHHHHh--cceEE
Q 016975 28 EVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKR----E--KNGRLQAFLLKYANSWLVDIY--CHKVI 98 (379)
Q Consensus 28 ~~~DvV~~~~p~~~~~~~~~~~~~~~~~-~vv~~~h~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~--~d~vi 98 (379)
.++|+||++++...++. +...+...+ |+|.+.|+.+...... . .....+..+.+.+..+....+ ||.|+
T Consensus 172 ~~~dviH~~s~~~~g~~--~~~~~~~~~~p~I~t~Hg~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~Ii 249 (475)
T cd03813 172 PKADVYHAVSTGYAGLL--GALAKARRGTPFLLTEHGIYTRERKIELLQADWEMSYFRRLWIRFFESLGRLAYQAADRIT 249 (475)
T ss_pred CCCCEEeccCcchHHHH--HHHHHHHhCCCEEEecCCccHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 47999999976544333 223333334 9999999976543210 0 012223333333333333333 89999
Q ss_pred EcChhhhhhhh------ccceee-cccCCCCccCccccHHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhhcC
Q 016975 99 RLSAATQEYAN------SIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELA 171 (379)
Q Consensus 99 ~~S~~~~~~~~------~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~ 171 (379)
++|+..++... +++.++ ||+|.+.|.+.... ...++++.|+|+||+.+.||++.+++|+..+.++.|
T Consensus 250 ~~s~~~~~~~~~~g~~~~ki~vIpNgid~~~f~~~~~~------~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~p 323 (475)
T cd03813 250 TLYEGNRERQIEDGADPEKIRVIPNGIDPERFAPARRA------RPEKEPPVVGLIGRVVPIKDIKTFIRAAAIVRKKIP 323 (475)
T ss_pred ecCHHHHHHHHHcCCCHHHeEEeCCCcCHHHcCCcccc------ccCCCCcEEEEEeccccccCHHHHHHHHHHHHHhCC
Confidence 99987665432 345555 89998877654321 123346789999999999999999999999998889
Q ss_pred CcEEEEEcCCcC----hHHHHHHHHhcCC--eeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 172 GLEVDLYGNGED----FNQIQEAAEKLKI--VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 172 ~~~l~i~G~g~~----~~~l~~~~~~~~l--~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
+++++|+|+++. .++++++++++++ ++.|+| ..+..++|+.+|++|+||..|++|++++||||||+|||+|+.
T Consensus 324 ~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G-~~~v~~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~PVVatd~ 402 (475)
T cd03813 324 DAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTG-FQNVKEYLPKLDVLVLTSISEGQPLVILEAMAAGIPVVATDV 402 (475)
T ss_pred CeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcC-CccHHHHHHhCCEEEeCchhhcCChHHHHHHHcCCCEEECCC
Confidence 999999998853 4567788888776 788889 444459999999999999999999999999999999999999
Q ss_pred Cc-cccccc------CCCEEEeC--CHHHHHHHHHHHHhCCCC--CCcHHH----HhcCCHHHHHHHHHHHHh
Q 016975 246 PS-NDFFKQ------FPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQ----RHQLSWESATERFLQVAE 303 (379)
Q Consensus 246 g~-~e~i~~------~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~~----~~~~sw~~~~~~~~~~~~ 303 (379)
|+ .|++.+ +.+|++++ |+++++++|.++++++.. .+++++ .+.|+|+.++++|.++|+
T Consensus 403 g~~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~~~~~~~~~~~~a~~~v~~~~s~~~~~~~y~~lY~ 475 (475)
T cd03813 403 GSCRELIEGADDEALGPAGEVVPPADPEALARAILRLLKDPELRRAMGEAGRKRVERYYTLERMIDSYRRLYL 475 (475)
T ss_pred CChHHHhcCCcccccCCceEEECCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 65 888888 56898887 999999999999998765 454433 388999999999999985
No 9
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=1.4e-32 Score=274.41 Aligned_cols=278 Identities=12% Similarity=-0.014 Sum_probs=198.4
Q ss_pred ccccccCCCCCCcEEEEcCCcchhhhhccccccccc-CcEEE-EeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcce
Q 016975 19 GDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKF-RYVVG-IVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHK 96 (379)
Q Consensus 19 ~~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~-~~vv~-~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 96 (379)
..+.+++++++|||||++......+.. ...... .|+|. .+|+....... ... ......+...+....++.
T Consensus 390 ~~L~~~lk~~kpDIVH~h~~~a~~lg~---lAa~~~gvPvIv~t~h~~~~~~~~----~~~-~~~~~~l~~~l~~~~~~i 461 (694)
T PRK15179 390 TKLTDVMRSSVPSVVHIWQDGSIFACA---LAALLAGVPRIVLSVRTMPPVDRP----DRY-RVEYDIIYSELLKMRGVA 461 (694)
T ss_pred HHHHHHHHHcCCcEEEEeCCcHHHHHH---HHHHHcCCCEEEEEeCCCccccch----hHH-HHHHHHHHHHHHhcCCeE
Confidence 457778888999999998755432221 111112 36654 55654321111 001 111222222333333456
Q ss_pred EEEcChhhhhhh-------hccceee-cccCCCCccCccccHHH-h--hcCCCCCcceEEEEEecccccCHHHHHHHHHH
Q 016975 97 VIRLSAATQEYA-------NSIICNV-HGVNPKFLEIGKKKKEQ-Q--QNGTHAFAKGAYYIGKMVWSKGYKELLELLDD 165 (379)
Q Consensus 97 vi~~S~~~~~~~-------~~~i~~i-~gvd~~~~~~~~~~~~~-~--~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~ 165 (379)
+++.|...++.. .+++.+| ||||...|.+....... . ......+.++|+++||+.+.||++.+++++.+
T Consensus 462 ~Vs~S~~~~~~l~~~~g~~~~kI~VI~NGVd~~~f~~~~~~~~~~~~~~~~~~~~~~vIg~VGRL~~~KG~~~LI~A~a~ 541 (694)
T PRK15179 462 LSSNSQFAAHRYADWLGVDERRIPVVYNGLAPLKSVQDDACTAMMAQFDARTSDARFTVGTVMRVDDNKRPFLWVEAAQR 541 (694)
T ss_pred EEeCcHHHHHHHHHHcCCChhHEEEECCCcCHHhcCCCchhhHHHHhhccccCCCCeEEEEEEeCCccCCHHHHHHHHHH
Confidence 677776544321 2356666 89998777543221111 1 11123345689999999999999999999999
Q ss_pred hHhhcCCcEEEEEcCCcChHHHHHHHHhcCC--eeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEec
Q 016975 166 HQKELAGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCA 243 (379)
Q Consensus 166 l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l--~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t 243 (379)
+.++.|+++|+|+|+|+..+.++++++++++ +|.|.|..++...+|+.+|+||+||.+|+||++++|||+||+|||+|
T Consensus 542 l~~~~p~~~LvIvG~G~~~~~L~~l~~~lgL~~~V~flG~~~dv~~ll~aaDv~VlpS~~Egfp~vlLEAMA~G~PVVat 621 (694)
T PRK15179 542 FAASHPKVRFIMVGGGPLLESVREFAQRLGMGERILFTGLSRRVGYWLTQFNAFLLLSRFEGLPNVLIEAQFSGVPVVTT 621 (694)
T ss_pred HHHHCcCeEEEEEccCcchHHHHHHHHHcCCCCcEEEcCCcchHHHHHHhcCEEEeccccccchHHHHHHHHcCCeEEEE
Confidence 9888899999999999999999999998886 67888998766699999999999999999999999999999999999
Q ss_pred CCCc-ccccccCCCEEEeC--C--HHHHHHHHHHHHhCCCC--CCcHHH----HhcCCHHHHHHHHHHHHhc
Q 016975 244 NHPS-NDFFKQFPNCRTYD--D--RNGFVEATLKALAEEPA--LPTEAQ----RHQLSWESATERFLQVAEL 304 (379)
Q Consensus 244 ~~g~-~e~i~~~~~g~~~~--~--~~~l~~~i~~~l~~~~~--~~~~~~----~~~~sw~~~~~~~~~~~~~ 304 (379)
+.|+ .|++.++.+|++++ | +++++++|.+++.+... .+++++ .++|||+.++++++++|++
T Consensus 622 ~~gG~~EiV~dg~~GlLv~~~d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a~~~FS~~~~~~~~~~lY~~ 693 (694)
T PRK15179 622 LAGGAGEAVQEGVTGLTLPADTVTAPDVAEALARIHDMCAADPGIARKAADWASARFSLNQMIASTVRCYQM 693 (694)
T ss_pred CCCChHHHccCCCCEEEeCCCCCChHHHHHHHHHHHhChhccHHHHHHHHHHHHHhCCHHHHHHHHHHHhCC
Confidence 9954 99999999999987 4 46899999888775433 333322 3799999999999999986
No 10
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=100.00 E-value=2.7e-32 Score=259.91 Aligned_cols=253 Identities=17% Similarity=0.197 Sum_probs=193.5
Q ss_pred CCCCcEEEEcCCcchhhhhccccccc-ccCcEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEEEcChhhh
Q 016975 27 DEVADIAVLEEPEHLTWFHHGKRWKT-KFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIRLSAATQ 105 (379)
Q Consensus 27 ~~~~DvV~~~~p~~~~~~~~~~~~~~-~~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~ 105 (379)
..++||||+|+...+... ...+ ...+++..+|..+.... +. .++.+|++|+..+
T Consensus 97 ~~~~~vi~v~~~~~~~~~----~~~~~~~~~~v~~~h~~~~~~~---------------~~------~~~~ii~~S~~~~ 151 (380)
T PRK15484 97 ITKDSVIVIHNSMKLYRQ----IRERAPQAKLVMHMHNAFEPEL---------------LD------KNAKIIVPSQFLK 151 (380)
T ss_pred CCCCcEEEEeCcHHhHHH----HHhhCCCCCEEEEEecccChhH---------------hc------cCCEEEEcCHHHH
Confidence 456999999985533211 1111 12388888887542111 11 1389999998877
Q ss_pred hhhhc-----cceee-cccCCCCccCccccHHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEc
Q 016975 106 EYANS-----IICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYG 179 (379)
Q Consensus 106 ~~~~~-----~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G 179 (379)
+...+ ++.++ ||+|.+.|.+..........+..+++.+++|+||+.+.||++.+++|+..+.++.|+++|+|+|
T Consensus 152 ~~~~~~~~~~~i~vIpngvd~~~~~~~~~~~~~~~~~~~~~~~~il~~Grl~~~Kg~~~Li~A~~~l~~~~p~~~lvivG 231 (380)
T PRK15484 152 KFYEERLPNADISIVPNGFCLETYQSNPQPNLRQQLNISPDETVLLYAGRISPDKGILLLMQAFEKLATAHSNLKLVVVG 231 (380)
T ss_pred HHHHhhCCCCCEEEecCCCCHHHcCCcchHHHHHHhCCCCCCeEEEEeccCccccCHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 65432 34455 8999877765433322333334445678999999999999999999999999888999999999
Q ss_pred CCcC---------hHHHHHHHHhcCCeeEEecCCCCHH--HHHhhcCEEEecCCC-CcchhHHHHHHHcCCeEEecCCCc
Q 016975 180 NGED---------FNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPSTT-DVVCTTTAEALAMGKIVVCANHPS 247 (379)
Q Consensus 180 ~g~~---------~~~l~~~~~~~~l~v~~~g~~~~~~--~~~~~~dv~v~ps~~-E~~~~~~~EAma~G~PVI~t~~g~ 247 (379)
+|+. .+.+++.+++++.++.|.|.++..+ ++|+.||++|+||.. |+||++++||||||+|||+|+.|+
T Consensus 232 ~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg 311 (380)
T PRK15484 232 DPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYPLADLVVVPSQVEEAFCMVAVEAMAAGKPVLASTKGG 311 (380)
T ss_pred CCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHhCCEEEeCCCCccccccHHHHHHHcCCCEEEeCCCC
Confidence 8764 2356666777777889999998777 999999999999975 999999999999999999999955
Q ss_pred -ccccccCCCEE-EeC--CHHHHHHHHHHHHhCCCC-CCcHHHH----hcCCHHHHHHHHHHHHhc
Q 016975 248 -NDFFKQFPNCR-TYD--DRNGFVEATLKALAEEPA-LPTEAQR----HQLSWESATERFLQVAEL 304 (379)
Q Consensus 248 -~e~i~~~~~g~-~~~--~~~~l~~~i~~~l~~~~~-~~~~~~~----~~~sw~~~~~~~~~~~~~ 304 (379)
.|++.++.+|+ +++ |+++++++|.++++++.. .++++++ ++|+|+.++++++++|+.
T Consensus 312 ~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~d~~~~~~~~~ar~~~~~~fsw~~~a~~~~~~l~~ 377 (380)
T PRK15484 312 ITEFVLEGITGYHLAEPMTSDSIISDINRTLADPELTQIAEQAKDFVFSKYSWEGVTQRFEEQIHN 377 (380)
T ss_pred cHhhcccCCceEEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 88999999998 444 999999999999998754 4444433 789999999999999974
No 11
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=100.00 E-value=4.5e-32 Score=261.06 Aligned_cols=274 Identities=17% Similarity=0.130 Sum_probs=198.0
Q ss_pred CCCcEEEEcCCcchhhhhcccccccccC-cEEEEeccChHHHHHHhhc-chHHHHHHHHHHHHHHHHhcceEEEcChhhh
Q 016975 28 EVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKN-GRLQAFLLKYANSWLVDIYCHKVIRLSAATQ 105 (379)
Q Consensus 28 ~~~DvV~~~~p~~~~~~~~~~~~~~~~~-~vv~~~h~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~ 105 (379)
.+||+||+|.... .+. +....+..+ |+|.++|+........... ........+...+. ....+|.++++|+...
T Consensus 100 ~~~Diih~h~~~~-~~~--~~~~~~~~~~p~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~~~d~vi~~s~~~~ 175 (405)
T TIGR03449 100 GYYDLIHSHYWLS-GQV--GWLLRDRWGVPLVHTAHTLAAVKNAALADGDTPEPEARRIGEQQ-LVDNADRLIANTDEEA 175 (405)
T ss_pred CCCCeEEechHHH-HHH--HHHHHHhcCCCEEEeccchHHHHHHhccCCCCCchHHHHHHHHH-HHHhcCeEEECCHHHH
Confidence 4799999987332 222 112222233 8999999864211110000 00001112222221 1122699999997644
Q ss_pred h-hhh------ccceee-cccCCCCccCccccHHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhhcCC--cEE
Q 016975 106 E-YAN------SIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAG--LEV 175 (379)
Q Consensus 106 ~-~~~------~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~--~~l 175 (379)
+ +.. .++..+ ||+|.+.|.+........+.+..++++.|+|+|++.+.||++.++++++.+.++.++ ++|
T Consensus 176 ~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~K~~~~li~a~~~l~~~~~~~~~~l 255 (405)
T TIGR03449 176 RDLVRHYDADPDRIDVVAPGADLERFRPGDRATERARLGLPLDTKVVAFVGRIQPLKAPDVLLRAVAELLDRDPDRNLRV 255 (405)
T ss_pred HHHHHHcCCChhhEEEECCCcCHHHcCCCcHHHHHHhcCCCCCCcEEEEecCCCcccCHHHHHHHHHHHHhhCCCcceEE
Confidence 3 322 234444 899988776543333333334445677999999999999999999999999877776 999
Q ss_pred EEEcC----C-cChHHHHHHHHhcCC--eeEEecCCCCHH--HHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCC
Q 016975 176 DLYGN----G-EDFNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHP 246 (379)
Q Consensus 176 ~i~G~----g-~~~~~l~~~~~~~~l--~v~~~g~~~~~~--~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g 246 (379)
+|+|+ | +..+++++.++++++ ++.|.|.+++.+ ++|+.||++++||..|+||++++|||+||+|||+|+.|
T Consensus 256 ~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~ 335 (405)
T TIGR03449 256 IVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRAADVVAVPSYNESFGLVAMEAQACGTPVVAARVG 335 (405)
T ss_pred EEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHhCCEEEECCCCCCcChHHHHHHHcCCCEEEecCC
Confidence 99995 3 446778888888876 688889998777 99999999999999999999999999999999999995
Q ss_pred c-ccccccCCCEEEeC--CHHHHHHHHHHHHhCCCC--CCcHHHH---hcCCHHHHHHHHHHHHhcc
Q 016975 247 S-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQR---HQLSWESATERFLQVAELD 305 (379)
Q Consensus 247 ~-~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~~~---~~~sw~~~~~~~~~~~~~~ 305 (379)
+ .|++.++.+|++++ |+++++++|.++++++.. .++..++ ++|||+.+++++.++|+..
T Consensus 336 ~~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~~fsw~~~~~~~~~~y~~~ 402 (405)
T TIGR03449 336 GLPVAVADGETGLLVDGHDPADWADALARLLDDPRTRIRMGAAAVEHAAGFSWAATADGLLSSYRDA 402 (405)
T ss_pred CcHhhhccCCceEECCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 5 88999999999987 999999999999987654 4444332 6899999999999999853
No 12
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=100.00 E-value=8.4e-33 Score=244.39 Aligned_cols=274 Identities=17% Similarity=0.174 Sum_probs=205.9
Q ss_pred ccccCCCCCCcEEEEcCCcchhhhhcccccccccC-cEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEEE
Q 016975 21 ISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIR 99 (379)
Q Consensus 21 l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~-~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 99 (379)
+...+.+++..+||-|.+.....+. +.+..+... .+|.+-|..+ .+. -..+.....+-.+ .....|++||
T Consensus 81 lr~i~lrE~I~ivhghs~fS~lahe-~l~hartMGlktVfTdHSlf-Gfa------d~~si~~n~ll~~-sL~~id~~Ic 151 (426)
T KOG1111|consen 81 LRPILLRERIEIVHGHSPFSYLAHE-ALMHARTMGLKTVFTDHSLF-GFA------DIGSILTNKLLPL-SLANIDRIIC 151 (426)
T ss_pred cchhhhhhceEEEecCChHHHHHHH-HHHHHHhcCceEEEeccccc-ccc------chhhhhhcceeee-eecCCCcEEE
Confidence 4555667789999998887665543 334444444 6677777632 111 1111111111111 1112599999
Q ss_pred cChhhh-------hhhhccceee-cccCCCCccCccccHHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhhcC
Q 016975 100 LSAATQ-------EYANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELA 171 (379)
Q Consensus 100 ~S~~~~-------~~~~~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~ 171 (379)
+|...+ .+...++.++ |.+++..|.|..... ...+...++.+||+.++||+|.+++++.++++++|
T Consensus 152 Vshtskentvlr~~L~p~kvsvIPnAv~~~~f~P~~~~~------~S~~i~~ivv~sRLvyrKGiDll~~iIp~vc~~~p 225 (426)
T KOG1111|consen 152 VSHTSKENTVLRGALAPAKVSVIPNAVVTHTFTPDAADK------PSADIITIVVASRLVYRKGIDLLLEIIPSVCDKHP 225 (426)
T ss_pred EeecCCCceEEEeccCHhHeeeccceeeccccccCcccc------CCCCeeEEEEEeeeeeccchHHHHHHHHHHHhcCC
Confidence 997644 2334566666 899999998854431 22234689999999999999999999999999999
Q ss_pred CcEEEEEcCCcChHHHHHHHHhcCC--eeEEecCCCCHH--HHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc
Q 016975 172 GLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS 247 (379)
Q Consensus 172 ~~~l~i~G~g~~~~~l~~~~~~~~l--~v~~~g~~~~~~--~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~ 247 (379)
+++|+|+||||.+..+++..+++.+ ++.++|.+++++ +.|.+.|+|++||.+|+||++++|||+||+|||+|++|+
T Consensus 226 ~vrfii~GDGPk~i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~IFlntSlTEafc~~ivEAaScGL~VVsTrVGG 305 (426)
T KOG1111|consen 226 EVRFIIIGDGPKRIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDIFLNTSLTEAFCMVIVEAASCGLPVVSTRVGG 305 (426)
T ss_pred CeeEEEecCCcccchHHHHHHHhhccCceEEecccchHHHHHHHhcCcEEeccHHHHHHHHHHHHHHhCCCEEEEeecCC
Confidence 9999999999998889988888766 778889999999 999999999999999999999999999999999999966
Q ss_pred -ccccccCCCEEEeC-CHHHHHHHHHHHHhCCCC---CCcHHHHhcCCHHHHHHHHHHHHhccccccc
Q 016975 248 -NDFFKQFPNCRTYD-DRNGFVEATLKALAEEPA---LPTEAQRHQLSWESATERFLQVAELDQAVVK 310 (379)
Q Consensus 248 -~e~i~~~~~g~~~~-~~~~l~~~i~~~l~~~~~---~~~~~~~~~~sw~~~~~~~~~~~~~~~~~~~ 310 (379)
.|++.++ .-++.+ ++++++++++++++.-.. .+-+...+.|+|+++++++.++|..+.....
T Consensus 306 IpeVLP~d-~i~~~~~~~~dl~~~v~~ai~~~~~~p~~~h~~v~~~y~w~dVa~rTekvy~r~~~t~~ 372 (426)
T KOG1111|consen 306 IPEVLPED-MITLGEPGPDDLVGAVEKAITKLRTLPLEFHDRVKKMYSWKDVAERTEKVYDRAATTSI 372 (426)
T ss_pred ccccCCcc-ceeccCCChHHHHHHHHHHHHHhccCchhHHHHHHHhccHHHHHHHHHHHHHHHhhccC
Confidence 8888876 233344 899999999999886544 2344555899999999999999998765444
No 13
>PRK10307 putative glycosyl transferase; Provisional
Probab=100.00 E-value=9.6e-32 Score=259.32 Aligned_cols=273 Identities=12% Similarity=0.048 Sum_probs=200.1
Q ss_pred CCCcEEEEcCCcchhhhhcccccccccC-cEEEEeccChHHHHHHhh---cchHHHHHHHHHHHHHHHHhcceEEEcChh
Q 016975 28 EVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREK---NGRLQAFLLKYANSWLVDIYCHKVIRLSAA 103 (379)
Q Consensus 28 ~~~DvV~~~~p~~~~~~~~~~~~~~~~~-~vv~~~h~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~ 103 (379)
.+||+||++.|..+.... +...++..+ |++..+|+.+++.....+ .+... .+...+.+++.+ .+|.++++|+.
T Consensus 105 ~~~Div~~~~p~~~~~~~-~~~~~~~~~~~~v~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~ad~ii~~S~~ 181 (412)
T PRK10307 105 WRPDRVIGVVPTLFCAPG-ARLLARLSGARTWLHIQDYEVDAAFGLGLLKGGKVA-RLATAFERSLLR-RFDNVSTISRS 181 (412)
T ss_pred CCCCEEEEeCCcHHHHHH-HHHHHHhhCCCEEEEeccCCHHHHHHhCCccCcHHH-HHHHHHHHHHHh-hCCEEEecCHH
Confidence 689999999876553321 112333334 888888876655432111 11111 122222332211 27999999988
Q ss_pred hhhhhhc------cceee-cccCCCCccCcccc---HHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhhcCCc
Q 016975 104 TQEYANS------IICNV-HGVNPKFLEIGKKK---KEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGL 173 (379)
Q Consensus 104 ~~~~~~~------~i~~i-~gvd~~~~~~~~~~---~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~ 173 (379)
.++...+ ++.++ ||+|.+.|.+.... ..+...+..+++++++|+|++.+.||++.|++|+..+.+ .+++
T Consensus 182 ~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~kg~~~li~a~~~l~~-~~~~ 260 (412)
T PRK10307 182 MMNKAREKGVAAEKVIFFPNWSEVARFQPVADADVDALRAQLGLPDGKKIVLYSGNIGEKQGLELVIDAARRLRD-RPDL 260 (412)
T ss_pred HHHHHHHcCCCcccEEEECCCcCHhhcCCCCccchHHHHHHcCCCCCCEEEEEcCccccccCHHHHHHHHHHhcc-CCCe
Confidence 7654432 34444 89998877653321 122233344556789999999999999999999998854 5789
Q ss_pred EEEEEcCCcChHHHHHHHHhcCC-eeEEecCCCCHH--HHHhhcCEEEecCCCCc----chhHHHHHHHcCCeEEecCCC
Q 016975 174 EVDLYGNGEDFNQIQEAAEKLKI-VVRVYPGRDHAD--LIFHDYKVFLNPSTTDV----VCTTTAEALAMGKIVVCANHP 246 (379)
Q Consensus 174 ~l~i~G~g~~~~~l~~~~~~~~l-~v~~~g~~~~~~--~~~~~~dv~v~ps~~E~----~~~~~~EAma~G~PVI~t~~g 246 (379)
+|+|+|+|+..+++++.++++++ ++.|.|.+++.+ ++|+.||++++||..|+ +|.+++||||||+|||+|+.|
T Consensus 261 ~l~ivG~g~~~~~l~~~~~~~~l~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~ 340 (412)
T PRK10307 261 IFVICGQGGGKARLEKMAQCRGLPNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEP 340 (412)
T ss_pred EEEEECCChhHHHHHHHHHHcCCCceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCC
Confidence 99999999999999999887776 688899998777 99999999999999988 577899999999999999985
Q ss_pred c---ccccccCCCEEEeC--CHHHHHHHHHHHHhCCCC--CCcHHHH----hcCCHHHHHHHHHHHHhccc
Q 016975 247 S---NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQR----HQLSWESATERFLQVAELDQ 306 (379)
Q Consensus 247 ~---~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~~~----~~~sw~~~~~~~~~~~~~~~ 306 (379)
+ .+++. .+|++++ |+++++++|.++++++.. .++++++ ++|||+.+++++.+.|+...
T Consensus 341 g~~~~~~i~--~~G~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~ 409 (412)
T PRK10307 341 GTELGQLVE--GIGVCVEPESVEALVAAIAALARQALLRPKLGTVAREYAERTLDKENVLRQFIADIRGLV 409 (412)
T ss_pred CchHHHHHh--CCcEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHh
Confidence 4 35665 5899887 999999999999988654 5555444 68999999999999998543
No 14
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=100.00 E-value=6.6e-32 Score=263.31 Aligned_cols=263 Identities=14% Similarity=0.145 Sum_probs=191.2
Q ss_pred ccCCCCCCcEEEEcCCcchhhhhcccccccccC-cEEEEeccChHHHHHHhhcchHHHHHHHHHHHHH-HHHhcceEEEc
Q 016975 23 EVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWL-VDIYCHKVIRL 100 (379)
Q Consensus 23 ~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~-~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~vi~~ 100 (379)
+.|...++||+|++.+....+. .+..... |++..+|+............. .+.......+ ....+|.+|++
T Consensus 205 ~~L~~~~~di~i~dr~~~~~~~----~~~~~~~~~~v~~lH~~h~~~~~~~~~~~---~~~~~y~~~~~~~~~~D~iI~~ 277 (500)
T TIGR02918 205 KQLNLTKKDIIILDRSTGIGQA----VLENKGPAKLGVVVHAEHFSESATNETYI---LWNNYYEYQFSNADYIDFFITA 277 (500)
T ss_pred HHHhCCCCCEEEEcCCcccchH----HHhcCCCceEEEEEChhhhcCccCcchhH---HHHHHHHHHHhchhhCCEEEEC
Confidence 3344568999999888766555 2333334 888999985532221111111 1111111111 11126999999
Q ss_pred Chhhhhhhh----------ccceee-cccCCCCccCccccHHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhh
Q 016975 101 SAATQEYAN----------SIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKE 169 (379)
Q Consensus 101 S~~~~~~~~----------~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~ 169 (379)
|+..++... .++..+ +|++...+.+.. ...+..|+|+||+.+.||++.+++|+..+.++
T Consensus 278 S~~~~~~l~~~~~~~~~~~~ki~viP~g~~~~~~~~~~----------~r~~~~il~vGrl~~~Kg~~~li~A~~~l~~~ 347 (500)
T TIGR02918 278 TDIQNQILKNQFKKYYNIEPRIYTIPVGSLDELQYPEQ----------ERKPFSIITASRLAKEKHIDWLVKAVVKAKKS 347 (500)
T ss_pred CHHHHHHHHHHhhhhcCCCCcEEEEcCCCcccccCccc----------ccCCeEEEEEeccccccCHHHHHHHHHHHHhh
Confidence 986543322 223333 677654443210 11234799999999999999999999999988
Q ss_pred cCCcEEEEEcCCcChHHHHHHHHhcCC--eeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCC-
Q 016975 170 LAGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHP- 246 (379)
Q Consensus 170 ~~~~~l~i~G~g~~~~~l~~~~~~~~l--~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g- 246 (379)
.|+++|+|+|+|+..+.++++++++++ .+.|.|.. +..++|+.||++|+||..||||++++||||||+|||+|+++
T Consensus 348 ~p~~~l~i~G~G~~~~~l~~~i~~~~l~~~V~f~G~~-~~~~~~~~adv~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~ 426 (500)
T TIGR02918 348 VPELTFDIYGEGGEKQKLQKIINENQAQDYIHLKGHR-NLSEVYKDYELYLSASTSEGFGLTLMEAVGSGLGMIGFDVNY 426 (500)
T ss_pred CCCeEEEEEECchhHHHHHHHHHHcCCCCeEEEcCCC-CHHHHHHhCCEEEEcCccccccHHHHHHHHhCCCEEEecCCC
Confidence 999999999999999999999988776 57788865 45589999999999999999999999999999999999983
Q ss_pred -cccccccCCCEEEeC-C---------HHHHHHHHHHHHhCCCC-CCcHHH---HhcCCHHHHHHHHHHHHh
Q 016975 247 -SNDFFKQFPNCRTYD-D---------RNGFVEATLKALAEEPA-LPTEAQ---RHQLSWESATERFLQVAE 303 (379)
Q Consensus 247 -~~e~i~~~~~g~~~~-~---------~~~l~~~i~~~l~~~~~-~~~~~~---~~~~sw~~~~~~~~~~~~ 303 (379)
..|++.++.||++++ + +++|+++|.++++++.. .+++++ .+.|||+.+++++.++++
T Consensus 427 G~~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll~~~~~~~~~~~a~~~a~~fs~~~v~~~w~~ll~ 498 (500)
T TIGR02918 427 GNPTFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVEYFNSNDIDAFHEYSYQIAEGFLTANIIEKWKKLVR 498 (500)
T ss_pred CCHHHccCCCCEEEEeCCccccchhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 489999999999986 2 88999999999853322 444433 389999999999999886
No 15
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=100.00 E-value=9.3e-32 Score=255.97 Aligned_cols=265 Identities=13% Similarity=0.044 Sum_probs=189.5
Q ss_pred CCCCCCcEEEEcCCcchhhhhcccccccccCcEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEEEcChh-
Q 016975 25 IPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIRLSAA- 103 (379)
Q Consensus 25 l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~- 103 (379)
+...+|||||+|++....+.. .+.....|+|..+|+....+. ...++++..+..+ +|.+++.|..
T Consensus 81 ~~~~~~Dvv~~h~~~~~~~~~---~~~~~~~~~i~~~H~~~~~~~---------~~~~~~~~~~~~~--~d~~i~~~~~~ 146 (372)
T cd03792 81 LLDLDADVVVIHDPQPLALPL---FKKKRGRPWIWRCHIDLSSPN---------RRVWDFLQPYIED--YDAAVFHLPEY 146 (372)
T ss_pred cccCCCCEEEECCCCchhHHH---hhhcCCCeEEEEeeeecCCCc---------HHHHHHHHHHHHh--CCEEeecHHHh
Confidence 446789999999876443331 122213488889997653211 1222333333222 4888888833
Q ss_pred hhhhhh-ccceee-cccCCCC-cc-C---ccccHHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEE
Q 016975 104 TQEYAN-SIICNV-HGVNPKF-LE-I---GKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVD 176 (379)
Q Consensus 104 ~~~~~~-~~i~~i-~gvd~~~-~~-~---~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~ 176 (379)
...... ..+ .+ ||+|+.. +. . ......+.+.+..+++++|+++||+.+.||++.+++++..+.+..++++|+
T Consensus 147 ~~~~~~~~~~-vipngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~l~ 225 (372)
T cd03792 147 VPPQVPPRKV-IIPPSIDPLSGKNRELSPADIEYILEKYGIDPERPYITQVSRFDPWKDPFGVIDAYRKVKERVPDPQLV 225 (372)
T ss_pred cCCCCCCceE-EeCCCCCCCccccCCCCHHHHHHHHHHhCCCCCCcEEEEEeccccccCcHHHHHHHHHHHhhCCCCEEE
Confidence 332222 233 44 8999643 11 1 111112233444566789999999999999999999999998877899999
Q ss_pred EEcCCcCh----H-HHHHHHHhcCC--eeEEecCC--CCHH--HHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 177 LYGNGEDF----N-QIQEAAEKLKI--VVRVYPGR--DHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 177 i~G~g~~~----~-~l~~~~~~~~l--~v~~~g~~--~~~~--~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
++|+|+.. . .+++..+..+. ++.|+|.. ++.+ .+|+.+|+|++||..|+||++++||||||+|||+|+.
T Consensus 226 i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~ 305 (372)
T cd03792 226 LVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEVNALQRASTVVLQKSIREGFGLTVTEALWKGKPVIAGPV 305 (372)
T ss_pred EEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcCCCEEEcCC
Confidence 99998652 2 23444433333 67788876 5555 8999999999999999999999999999999999999
Q ss_pred Cc-ccccccCCCEEEeCCHHHHHHHHHHHHhCCCC--CCcHHH----HhcCCHHHHHHHHHHHHhc
Q 016975 246 PS-NDFFKQFPNCRTYDDRNGFVEATLKALAEEPA--LPTEAQ----RHQLSWESATERFLQVAEL 304 (379)
Q Consensus 246 g~-~e~i~~~~~g~~~~~~~~l~~~i~~~l~~~~~--~~~~~~----~~~~sw~~~~~~~~~~~~~ 304 (379)
|+ .+++.++.+|+++++.++++++|.+++++++. .|++.+ .++|+|+.++++++++|+.
T Consensus 306 ~~~~~~i~~~~~g~~~~~~~~~a~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~ 371 (372)
T cd03792 306 GGIPLQIEDGETGFLVDTVEEAAVRILYLLRDPELRRKMGANAREHVRENFLITRHLKDYLYLISK 371 (372)
T ss_pred CCchhhcccCCceEEeCCcHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHh
Confidence 55 88999999999999999999999999987654 444433 3789999999999999984
No 16
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=100.00 E-value=1.2e-31 Score=260.23 Aligned_cols=278 Identities=18% Similarity=0.187 Sum_probs=186.5
Q ss_pred ccccCCC--CCCcEEEEcCCcchhhhhcccccccccC-cEEEEeccChHHHHHHh-hcchHHHHHH---H---H--HHHH
Q 016975 21 ISEVIPD--EVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKRE-KNGRLQAFLL---K---Y--ANSW 88 (379)
Q Consensus 21 l~~~l~~--~~~DvV~~~~p~~~~~~~~~~~~~~~~~-~vv~~~h~~~~~~~~~~-~~~~~~~~~~---~---~--~~~~ 88 (379)
+.+.+.+ .+|||||+|... ..+. +..+.+..+ |+|.+.|+......... ..+.....+. . . ..++
T Consensus 104 l~~~~~~~~~~~DvIH~h~~~-~~~~--~~~~~~~~~~p~V~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (439)
T TIGR02472 104 LLQHLRQQGHLPDLIHAHYAD-AGYV--GARLSRLLGVPLIFTGHSLGREKRRRLLAAGLKPQQIEKQYNISRRIEAEEE 180 (439)
T ss_pred HHHHHHHcCCCCCEEEEcchh-HHHH--HHHHHHHhCCCEEEecccccchhhhhcccCCCChhhhhhhcchHHHHHHHHH
Confidence 3444443 379999999743 2222 112333334 99999997432211100 0000000000 0 0 1111
Q ss_pred HHHHhcceEEEcChh-hhh-------hhhccceee-cccCCCCccCccccHH-------HhhcCCCCCcceEEEEEeccc
Q 016975 89 LVDIYCHKVIRLSAA-TQE-------YANSIICNV-HGVNPKFLEIGKKKKE-------QQQNGTHAFAKGAYYIGKMVW 152 (379)
Q Consensus 89 ~~~~~~d~vi~~S~~-~~~-------~~~~~i~~i-~gvd~~~~~~~~~~~~-------~~~~~~~~~~~~il~vgrl~~ 152 (379)
....+|.||++|.. ..+ +..+++.++ ||+|++.|.+...... .+.....++++.|+|+||+.+
T Consensus 181 -~~~~ad~ii~~s~~~~~~~~~~~~~~~~~ki~vIpnGvd~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vGrl~~ 259 (439)
T TIGR02472 181 -TLAHASLVITSTHQEIEEQYALYDSYQPERMQVIPPGVDLSRFYPPQSSEETSEIDNLLAPFLKDPEKPPILAISRPDR 259 (439)
T ss_pred -HHHhCCEEEECCHHHHHHHHHhccCCCccceEEECCCcChhhcCCCCccccchhHHHHHHhhccccCCcEEEEEcCCcc
Confidence 12237999999954 222 123456666 8999988865432111 112223445678999999999
Q ss_pred ccCHHHHHHHHHHhHh--hcCCcEEEEEcCCcChHH-----------HHHHHHhcCC--eeEEecCCCCHH--HHHhhc-
Q 016975 153 SKGYKELLELLDDHQK--ELAGLEVDLYGNGEDFNQ-----------IQEAAEKLKI--VVRVYPGRDHAD--LIFHDY- 214 (379)
Q Consensus 153 ~Kg~~~li~a~~~l~~--~~~~~~l~i~G~g~~~~~-----------l~~~~~~~~l--~v~~~g~~~~~~--~~~~~~- 214 (379)
.||++.+++|+..+.. ..+++ ++|+|+|++... +..++++.++ ++.|.|.++..+ ++|+.|
T Consensus 260 ~Kg~~~li~A~~~l~~~~~~~~l-~li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~f~g~~~~~~~~~~~~~a~ 338 (439)
T TIGR02472 260 RKNIPSLVEAYGRSPKLQEMANL-VLVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYGKVAYPKHHRPDDVPELYRLAA 338 (439)
T ss_pred cCCHHHHHHHHHhChhhhhhccE-EEEeCCccccccccHHHHHHHHHHHHHHHHcCCCceEEecCCCCHHHHHHHHHHHh
Confidence 9999999999986432 22343 236788876322 3344566555 678889887766 889877
Q ss_pred ---CEEEecCCCCcchhHHHHHHHcCCeEEecCCCc-ccccccCCCEEEeC--CHHHHHHHHHHHHhCCCC--CCcHHHH
Q 016975 215 ---KVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQR 286 (379)
Q Consensus 215 ---dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~~~ 286 (379)
|+||+||..|+||++++||||||+|||+|+.|+ .|++.++.+|++++ |+++++++|.++++++.. .++++++
T Consensus 339 ~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg~~eiv~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~ 418 (439)
T TIGR02472 339 RSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDGGPRDIIANCRNGLLVDVLDLEAIASALEDALSDSSQWQLWSRNGI 418 (439)
T ss_pred hcCCEEecccccCCcccHHHHHHHhCCCEEEeCCCCcHHHhcCCCcEEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 999999999999999999999999999999955 88999999999987 999999999999998765 4555443
Q ss_pred ----hcCCHHHHHHHHHHHHh
Q 016975 287 ----HQLSWESATERFLQVAE 303 (379)
Q Consensus 287 ----~~~sw~~~~~~~~~~~~ 303 (379)
++|||+.++++|+++.+
T Consensus 419 ~~~~~~fsw~~~~~~~~~l~~ 439 (439)
T TIGR02472 419 EGVRRHYSWDAHVEKYLRILQ 439 (439)
T ss_pred HHHHHhCCHHHHHHHHHHHhC
Confidence 78999999999998764
No 17
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=1.8e-31 Score=253.44 Aligned_cols=277 Identities=17% Similarity=0.115 Sum_probs=203.9
Q ss_pred ccccccCCCCCCcEEEEcCCcchhhhhc-ccccccc-cCcEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcce
Q 016975 19 GDISEVIPDEVADIAVLEEPEHLTWFHH-GKRWKTK-FRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHK 96 (379)
Q Consensus 19 ~~l~~~l~~~~~DvV~~~~p~~~~~~~~-~~~~~~~-~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 96 (379)
..+.+.+.+.+||+||++.+....+... ......+ ..|++.++|+....... ... .+....... ...+|.
T Consensus 74 ~~l~~~i~~~~~divh~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~--~~~----~~~~~~~~~--~~~~d~ 145 (371)
T cd04962 74 SKIAEVAKRYKLDLLHVHYAVPHAVAAYLAREILGKKDLPVVTTLHGTDITLVG--QDP----SFQPATRFS--IEKSDG 145 (371)
T ss_pred HHHHHHHhcCCccEEeecccCCccHHHHHHHHhcCcCCCcEEEEEcCCcccccc--ccc----cchHHHHHH--HhhCCE
Confidence 3566777788999999986543211110 1112221 24889999975432221 011 111111111 122699
Q ss_pred EEEcChhhhhhhh------ccceee-cccCCCCccCccccHHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhh
Q 016975 97 VIRLSAATQEYAN------SIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKE 169 (379)
Q Consensus 97 vi~~S~~~~~~~~------~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~ 169 (379)
++++|+..++... .++..+ ||+|...+.+..........+..++++.++|+|++.+.||++.+++++..+.++
T Consensus 146 ii~~s~~~~~~~~~~~~~~~~i~vi~n~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~l~~~K~~~~li~a~~~l~~~ 225 (371)
T cd04962 146 VTAVSESLRQETYELFDITKEIEVIPNFVDEDRFRPKPDEALKRRLGAPEGEKVLIHISNFRPVKRIDDVIRIFAKVRKE 225 (371)
T ss_pred EEEcCHHHHHHHHHhcCCcCCEEEecCCcCHhhcCCCchHHHHHhcCCCCCCeEEEEecccccccCHHHHHHHHHHHHhc
Confidence 9999988665432 234444 899877665543332233334445677899999999999999999999998765
Q ss_pred cCCcEEEEEcCCcChHHHHHHHHhcCC--eeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc
Q 016975 170 LAGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS 247 (379)
Q Consensus 170 ~~~~~l~i~G~g~~~~~l~~~~~~~~l--~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~ 247 (379)
.+++++++|+|++.+.+++.+++.++ ++.|+|..++..++|+.||++|+||..|++|++++|||+||+|||+|+.|+
T Consensus 226 -~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g~PvI~s~~~~ 304 (371)
T cd04962 226 -VPARLLLVGDGPERSPAERLARELGLQDDVLFLGKQDHVEELLSIADLFLLPSEKESFGLAALEAMACGVPVVASNAGG 304 (371)
T ss_pred -CCceEEEEcCCcCHHHHHHHHHHcCCCceEEEecCcccHHHHHHhcCEEEeCCCcCCCccHHHHHHHcCCCEEEeCCCC
Confidence 56899999999998999988888766 688889887766999999999999999999999999999999999999955
Q ss_pred -ccccccCCCEEEeC--CHHHHHHHHHHHHhCCCC--CCcHHH----HhcCCHHHHHHHHHHHHhc
Q 016975 248 -NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQ----RHQLSWESATERFLQVAEL 304 (379)
Q Consensus 248 -~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~~----~~~~sw~~~~~~~~~~~~~ 304 (379)
.|++.++.+|++++ |++++++++..+++++.. .++..+ .++|+|+.+++++.+.|+.
T Consensus 305 ~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~~ 370 (371)
T cd04962 305 IPEVVKHGETGFLVDVGDVEAMAEYALSLLEDDELWQEFSRAARNRAAERFDSERIVPQYEALYRR 370 (371)
T ss_pred chhhhcCCCceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 88999999999988 999999999999987654 344422 3789999999999999974
No 18
>PRK00654 glgA glycogen synthase; Provisional
Probab=100.00 E-value=1.6e-31 Score=260.93 Aligned_cols=210 Identities=19% Similarity=0.258 Sum_probs=165.2
Q ss_pred cceEEEcChhhhhhhh----------------ccceee-cccCCCCccCcccc-------------------HHHhhcCC
Q 016975 94 CHKVIRLSAATQEYAN----------------SIICNV-HGVNPKFLEIGKKK-------------------KEQQQNGT 137 (379)
Q Consensus 94 ~d~vi~~S~~~~~~~~----------------~~i~~i-~gvd~~~~~~~~~~-------------------~~~~~~~~ 137 (379)
+|.|+++|+..++... .++..| ||||.+.|.|.... ..+.+.+.
T Consensus 198 ad~vitvS~~~~~ei~~~~~~~gl~~~~~~~~~ki~vI~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl 277 (466)
T PRK00654 198 ADRVTTVSPTYAREITTPEFGYGLEGLLRARSGKLSGILNGIDYDIWNPETDPLLAANYSADDLEGKAENKRALQERFGL 277 (466)
T ss_pred cCcCeeeCHHHHHHhccccCCcChHHHHHhcccCceEecCCCCccccCCccCcccccccChhhhhchHHHHHHHHHHhCC
Confidence 7999999977553221 245555 99999988764221 11222233
Q ss_pred C-CCcceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcC--hHHHHHHHHhcCCeeEEecCCCCHH--HHHh
Q 016975 138 H-AFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED--FNQIQEAAEKLKIVVRVYPGRDHAD--LIFH 212 (379)
Q Consensus 138 ~-~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~l~v~~~g~~~~~~--~~~~ 212 (379)
. ++.++|+|+||+.++||++.+++++.++.+. +++|+|+|+|+. .+.+++++++++.++.+.++.+... .+|+
T Consensus 278 ~~~~~~~i~~vGRl~~~KG~~~li~a~~~l~~~--~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~~ 355 (466)
T PRK00654 278 PDDDAPLFAMVSRLTEQKGLDLVLEALPELLEQ--GGQLVLLGTGDPELEEAFRALAARYPGKVGVQIGYDEALAHRIYA 355 (466)
T ss_pred CCCCCcEEEEeeccccccChHHHHHHHHHHHhc--CCEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHh
Confidence 2 3567999999999999999999999998764 799999999864 4678888888887777664454443 7899
Q ss_pred hcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc-ccccccC------CCEEEeC--CHHHHHHHHHHHHh---CCCC-
Q 016975 213 DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQF------PNCRTYD--DRNGFVEATLKALA---EEPA- 279 (379)
Q Consensus 213 ~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-~e~i~~~------~~g~~~~--~~~~l~~~i~~~l~---~~~~- 279 (379)
.||+||+||.+|+||++++|||+||+|||+|++|+ .|.+.++ .+|++++ |+++|+++|.++++ +++.
T Consensus 356 ~aDv~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~~~~~~~~~ 435 (466)
T PRK00654 356 GADMFLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGEATGFVFDDFNAEDLLRALRRALELYRQPPLW 435 (466)
T ss_pred hCCEEEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999999999999999999999999999955 8888887 8999988 99999999999886 3322
Q ss_pred -CCcHHHH-hcCCHHHHHHHHHHHHhcc
Q 016975 280 -LPTEAQR-HQLSWESATERFLQVAELD 305 (379)
Q Consensus 280 -~~~~~~~-~~~sw~~~~~~~~~~~~~~ 305 (379)
+++.++. +.|||+.++++|+++|+..
T Consensus 436 ~~~~~~~~~~~fsw~~~a~~~~~lY~~~ 463 (466)
T PRK00654 436 RALQRQAMAQDFSWDKSAEEYLELYRRL 463 (466)
T ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHH
Confidence 3444333 7899999999999999853
No 19
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.98 E-value=1.7e-31 Score=253.29 Aligned_cols=266 Identities=15% Similarity=0.109 Sum_probs=195.2
Q ss_pred ccccCCCCCCcEEEEcCCcchhhhhccccccccc-CcEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEEE
Q 016975 21 ISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKF-RYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIR 99 (379)
Q Consensus 21 l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~-~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 99 (379)
+..++++.+||+||++......+. ....++. .|++..+|+.............. ....+...+.+ ...+|.+++
T Consensus 74 ~~~~~~~~~~dvvh~~~~~~~~~~---~~~~~~~~~p~i~~~h~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~d~ii~ 148 (367)
T cd05844 74 LRRLLRRHRPDLVHAHFGFDGVYA---LPLARRLGVPLVVTFHGFDATTSLALLLRSR-WALYARRRRRL-ARRAALFIA 148 (367)
T ss_pred HHHHHHhhCCCEEEeccCchHHHH---HHHHHHcCCCEEEEEeCccccccchhhcccc-hhHHHHHHHHH-HHhcCEEEE
Confidence 334567789999999865432222 1222333 39999999754322211111000 11111112111 122699999
Q ss_pred cChhhhhhhhc------cceee-cccCCCCccCccccHHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhhcCC
Q 016975 100 LSAATQEYANS------IICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAG 172 (379)
Q Consensus 100 ~S~~~~~~~~~------~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~ 172 (379)
+|+..++...+ ++.++ ||+|.+.+.+... ...++.++|+|++.+.||++.+++++..+.++.++
T Consensus 149 ~s~~~~~~~~~~~~~~~~i~vi~~g~d~~~~~~~~~---------~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~ 219 (367)
T cd05844 149 VSQFIRDRLLALGFPPEKVHVHPIGVDTAKFTPATP---------ARRPPRILFVGRFVEKKGPLLLLEAFARLARRVPE 219 (367)
T ss_pred CCHHHHHHHHHcCCCHHHeEEecCCCCHHhcCCCCC---------CCCCcEEEEEEeeccccChHHHHHHHHHHHHhCCC
Confidence 99887755432 34344 8999876654311 12355899999999999999999999999888899
Q ss_pred cEEEEEcCCcChHHHHHHHHhcCC--eeEEecCCCCHH--HHHhhcCEEEecCC------CCcchhHHHHHHHcCCeEEe
Q 016975 173 LEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPST------TDVVCTTTAEALAMGKIVVC 242 (379)
Q Consensus 173 ~~l~i~G~g~~~~~l~~~~~~~~l--~v~~~g~~~~~~--~~~~~~dv~v~ps~------~E~~~~~~~EAma~G~PVI~ 242 (379)
++|+++|+|+..+++++.++++++ ++.|+|.+++.+ ++|+.||++++||. .|++|++++|||+||+|||+
T Consensus 220 ~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~ 299 (367)
T cd05844 220 VRLVIIGDGPLLAALEALARALGLGGRVTFLGAQPHAEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVA 299 (367)
T ss_pred eEEEEEeCchHHHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHcCCCEEE
Confidence 999999999988889998888654 788889998877 99999999999996 59999999999999999999
Q ss_pred cCCCc-ccccccCCCEEEeC--CHHHHHHHHHHHHhCCCC--CCcHHH----HhcCCHHHHHHHHHH
Q 016975 243 ANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQ----RHQLSWESATERFLQ 300 (379)
Q Consensus 243 t~~g~-~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~~----~~~~sw~~~~~~~~~ 300 (379)
|+.++ .|++.++.+|++++ |+++++++|.+++++++. .++.++ .++|||+.+++++.+
T Consensus 300 s~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~l~~ 366 (367)
T cd05844 300 TRHGGIPEAVEDGETGLLVPEGDVAALAAALGRLLADPDLRARMGAAGRRRVEERFDLRRQTAKLEA 366 (367)
T ss_pred eCCCCchhheecCCeeEEECCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 99955 88899999999987 999999999999987764 444433 378999999999865
No 20
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.98 E-value=6e-31 Score=251.98 Aligned_cols=268 Identities=16% Similarity=0.116 Sum_probs=194.6
Q ss_pred CCCCCCcEEEEcCCcchhhhhcccccccccCcEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHH--HHhcceEEEcCh
Q 016975 25 IPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLV--DIYCHKVIRLSA 102 (379)
Q Consensus 25 l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~vi~~S~ 102 (379)
+...++|+||++......+. . ....+ .|++..+|....... ...+.....+...+..+.. ...+|.++++|+
T Consensus 90 ~~~~~~Dvi~~~~~~~~~~~--~-~~~~~-~~~i~~~h~~~~~~~--~~~~~~~~~~~~~~~~~e~~~~~~ad~ii~~s~ 163 (392)
T cd03805 90 LPDEKYDVFIVDQVSACVPL--L-KLFSP-SKILFYCHFPDQLLA--QRGSLLKRLYRKPFDWLEEFTTGMADKIVVNSN 163 (392)
T ss_pred cccCCCCEEEEcCcchHHHH--H-HHhcC-CcEEEEEecChHHhc--CCCcHHHHHHHHHHHHHHHHHhhCceEEEEcCh
Confidence 45678999999764432222 1 12222 588888885432221 1222222222222222222 222799999998
Q ss_pred hhhhhhhc--------cceee-cccCCCCccCccccHHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhhc---
Q 016975 103 ATQEYANS--------IICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKEL--- 170 (379)
Q Consensus 103 ~~~~~~~~--------~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~--- 170 (379)
.+++...+ .+.++ ||+|.+.|.+.............++.+.++++||+.+.||++.+++++.++.++.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~vi~n~vd~~~~~~~~~~~~~~~~~~~~~~~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~~~ 243 (392)
T cd03805 164 FTASVFKKTFPSLAKNPREVVYPCVDTDSFESTSEDPDPGLLIPKSGKKTFLSINRFERKKNIALAIEAFAILKDKLAEF 243 (392)
T ss_pred hHHHHHHHHhcccccCCcceeCCCcCHHHcCcccccccccccccCCCceEEEEEeeecccCChHHHHHHHHHHHhhcccc
Confidence 87764432 11234 8999887765433211222233455778999999999999999999999998876
Q ss_pred CCcEEEEEcCCcCh--------HHHHHHHHh-cCC--eeEEecCCCCHH--HHHhhcCEEEecCCCCcchhHHHHHHHcC
Q 016975 171 AGLEVDLYGNGEDF--------NQIQEAAEK-LKI--VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMG 237 (379)
Q Consensus 171 ~~~~l~i~G~g~~~--------~~l~~~~~~-~~l--~v~~~g~~~~~~--~~~~~~dv~v~ps~~E~~~~~~~EAma~G 237 (379)
++++|+++|+|+.. +++++.+++ .++ ++.|.|.+++.+ .+|+.||++++||..|+||++++||||||
T Consensus 244 ~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~~~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G 323 (392)
T cd03805 244 KNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISDSQKELLLSSARALLYTPSNEHFGIVPLEAMYAG 323 (392)
T ss_pred cCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCChHHHHHHHhhCeEEEECCCcCCCCchHHHHHHcC
Confidence 89999999988753 678888877 665 788999999887 89999999999999999999999999999
Q ss_pred CeEEecCCCc-ccccccCCCEEEeC-CHHHHHHHHHHHHhCCCC--CCcHHH----HhcCCHHHHHHHH
Q 016975 238 KIVVCANHPS-NDFFKQFPNCRTYD-DRNGFVEATLKALAEEPA--LPTEAQ----RHQLSWESATERF 298 (379)
Q Consensus 238 ~PVI~t~~g~-~e~i~~~~~g~~~~-~~~~l~~~i~~~l~~~~~--~~~~~~----~~~~sw~~~~~~~ 298 (379)
+|||+|+.|+ .|++.++.+|++++ |+++++++|.++++++.. .+++++ .++|+|+.+++++
T Consensus 324 ~PvI~s~~~~~~e~i~~~~~g~~~~~~~~~~a~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~ 392 (392)
T cd03805 324 KPVIACNSGGPLETVVDGETGFLCEPTPEEFAEAMLKLANDPDLADRMGAAGRKRVKEKFSTEAFAERL 392 (392)
T ss_pred CCEEEECCCCcHHHhccCCceEEeCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhcCHHHHhhhC
Confidence 9999999955 88999989999888 999999999999998754 454433 3889999998764
No 21
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.98 E-value=1.4e-31 Score=256.09 Aligned_cols=278 Identities=12% Similarity=-0.003 Sum_probs=192.3
Q ss_pred cccccccCCCCCCcEEEEcCCcc--hhhhhcccccccccCcEE-EEeccChHHHHHHhhcchHHHHHHHHHHH-HHHHHh
Q 016975 18 VGDISEVIPDEVADIAVLEEPEH--LTWFHHGKRWKTKFRYVV-GIVHTNYLEYVKREKNGRLQAFLLKYANS-WLVDIY 93 (379)
Q Consensus 18 ~~~l~~~l~~~~~DvV~~~~p~~--~~~~~~~~~~~~~~~~vv-~~~h~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 93 (379)
...+..++.+.+|||||++.... +++. +.+.. ..|++ ...|+.+..... . ....-+..... ......
T Consensus 269 ~~~l~~~ir~~rpDIVHt~~~~a~l~g~l--aA~la--gvpviv~~~h~~~~~~~~----r-~~~~e~~~~~~a~~i~~~ 339 (578)
T PRK15490 269 IKHLVPHLCERKLDYLSVWQDGACLMIAL--AALIA--GVPRIQLGLRGLPPVVRK----R-LFKPEYEPLYQALAVVPG 339 (578)
T ss_pred HHHHHHHHHHcCCCEEEEcCcccHHHHHH--HHHhc--CCCEEEEeecccCCcchh----h-HHHHHHHHhhhhceeEec
Confidence 34677888899999999987553 2222 11222 13664 445552211110 0 00000011111 000111
Q ss_pred cceEEEcChhhhhh-------hhccceee-cccCCCCccCccccH--HHh--hcCCCCCcceEEEEEecccccCHHHHHH
Q 016975 94 CHKVIRLSAATQEY-------ANSIICNV-HGVNPKFLEIGKKKK--EQQ--QNGTHAFAKGAYYIGKMVWSKGYKELLE 161 (379)
Q Consensus 94 ~d~vi~~S~~~~~~-------~~~~i~~i-~gvd~~~~~~~~~~~--~~~--~~~~~~~~~~il~vgrl~~~Kg~~~li~ 161 (379)
+| +++.|..+.+. ..+++.+| ||+|++.|.+..... .+. .....++.+.++++||+.+.||+..+++
T Consensus 340 sd-~v~~s~~v~~~l~~~lgip~~KI~VIyNGVD~~rf~p~~~~~~~~r~~~~~~l~~~~~vIg~VgRl~~~Kg~~~LI~ 418 (578)
T PRK15490 340 VD-FMSNNHCVTRHYADWLKLEAKHFQVVYNGVLPPSTEPSSEVPHKIWQQFTQKTQDADTTIGGVFRFVGDKNPFAWID 418 (578)
T ss_pred ch-hhhccHHHHHHHHHHhCCCHHHEEEEeCCcchhhcCccchhhHHHHHHhhhccCCCCcEEEEEEEEehhcCHHHHHH
Confidence 34 56666554432 23456666 999998877643221 111 1112334568999999999999999999
Q ss_pred HHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCC--eeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCe
Q 016975 162 LLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKI 239 (379)
Q Consensus 162 a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l--~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~P 239 (379)
++.++.+..|+++|+|+|+|+..+++++.++++++ ++.|.|..++..++|+.+|+||+||.+|+||++++||||||+|
T Consensus 419 A~a~llk~~pdirLvIVGdG~~~eeLk~la~elgL~d~V~FlG~~~Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA~GlP 498 (578)
T PRK15490 419 FAARYLQHHPATRFVLVGDGDLRAEAQKRAEQLGILERILFVGASRDVGYWLQKMNVFILFSRYEGLPNVLIEAQMVGVP 498 (578)
T ss_pred HHHHHHhHCCCeEEEEEeCchhHHHHHHHHHHcCCCCcEEECCChhhHHHHHHhCCEEEEcccccCccHHHHHHHHhCCC
Confidence 99988888899999999999999999999998876 6888899776669999999999999999999999999999999
Q ss_pred EEecCCCc-ccccccCCCEEEeC--CHHHHHHHHH---HHHhCCCC--CCcHHH----HhcCCHHHHHHHHHHHHhcc
Q 016975 240 VVCANHPS-NDFFKQFPNCRTYD--DRNGFVEATL---KALAEEPA--LPTEAQ----RHQLSWESATERFLQVAELD 305 (379)
Q Consensus 240 VI~t~~g~-~e~i~~~~~g~~~~--~~~~l~~~i~---~~l~~~~~--~~~~~~----~~~~sw~~~~~~~~~~~~~~ 305 (379)
||+|+.|+ .|++.++.+|++++ |++++++++. .+...... .++.++ .++|||+.++++|.++|...
T Consensus 499 VVATdvGG~~EiV~dG~nG~LVp~~D~~aLa~ai~lA~aL~~ll~~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~~~~ 576 (578)
T PRK15490 499 VISTPAGGSAECFIEGVSGFILDDAQTVNLDQACRYAEKLVNLWRSRTGICQQTQSFLQERFTVEHMVGTFVKTIASQ 576 (578)
T ss_pred EEEeCCCCcHHHcccCCcEEEECCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhc
Confidence 99999955 89999999999988 7777777652 22222211 233332 37999999999999999863
No 22
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.98 E-value=8.2e-31 Score=247.12 Aligned_cols=275 Identities=18% Similarity=0.214 Sum_probs=205.4
Q ss_pred cccccCCCCCCcEEEEcCCcchhhhhcccccccccC-cEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEE
Q 016975 20 DISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVI 98 (379)
Q Consensus 20 ~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~-~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 98 (379)
.+.+.+++.+||+||++.+....+. +..+.++.+ |++..+|+.+..+..................... ..+|.++
T Consensus 74 ~~~~~~~~~~pdii~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~i~ 149 (364)
T cd03814 74 RVRRLLDAFAPDVVHIATPGPLGLA--ALRAARRLGIPVVTSYHTDFPEYLRYYGLGPLSWLAWAYLRWFH--NRADRVL 149 (364)
T ss_pred hHHHHHHhcCCCEEEEeccchhhHH--HHHHHHHcCCCEEEEEecChHHHhhhcccchHhHhhHHHHHHHH--HhCCEEE
Confidence 4556666789999999877666554 234444444 9999999988766543222222222122222211 1269999
Q ss_pred EcChhhhhhhhc----cceee-cccCCCCccCccccHHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhhcCCc
Q 016975 99 RLSAATQEYANS----IICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGL 173 (379)
Q Consensus 99 ~~S~~~~~~~~~----~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~ 173 (379)
++|+...+.... ++..+ +|+|...+.+..............+++.++|+|++.+.||++.+++++..+..+ +++
T Consensus 150 ~~s~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~-~~~ 228 (364)
T cd03814 150 VPSPSLADELRARGFRRVRLWPRGVDTELFHPRRRDEALRARLGPPDRPVLLYVGRLAPEKNLEALLDADLPLRRR-PPV 228 (364)
T ss_pred eCCHHHHHHHhccCCCceeecCCCccccccCcccccHHHHHHhCCCCCeEEEEEeccccccCHHHHHHHHHHhhhc-CCc
Confidence 999887754332 23333 799988776544332222222234467899999999999999999999999877 899
Q ss_pred EEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHH--HHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc-ccc
Q 016975 174 EVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDF 250 (379)
Q Consensus 174 ~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~--~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-~e~ 250 (379)
+|+++|+|++...++ ....++.++|.++..+ ++|+.||++++||..|++|++++||||||+|||+++.++ .++
T Consensus 229 ~l~i~G~~~~~~~~~----~~~~~v~~~g~~~~~~~~~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~~~~~ 304 (364)
T cd03814 229 RLVIVGDGPARARLE----ARYPNVHFLGFLDGEELAAAYASADVFVFPSRTETFGLVVLEAMASGLPVVAPDAGGPADI 304 (364)
T ss_pred eEEEEeCCchHHHHh----ccCCcEEEEeccCHHHHHHHHHhCCEEEECcccccCCcHHHHHHHcCCCEEEcCCCCchhh
Confidence 999999998876665 3344889999988777 999999999999999999999999999999999999955 888
Q ss_pred cccCCCEEEeC--CHHHHHHHHHHHHhCCCC--CCcHHHH---hcCCHHHHHHHHHHHHh
Q 016975 251 FKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQR---HQLSWESATERFLQVAE 303 (379)
Q Consensus 251 i~~~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~~~---~~~sw~~~~~~~~~~~~ 303 (379)
+.++.+|++++ |.++++++|.+++++++. .++..++ ++|+|+.++++++++|+
T Consensus 305 i~~~~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (364)
T cd03814 305 VTDGENGLLVEPGDAEAFAAALAALLADPELRRRMAARARAEAERRSWEAFLDNLLEAYR 364 (364)
T ss_pred hcCCcceEEcCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHhhC
Confidence 88888998887 888999999999998765 4444443 58999999999999884
No 23
>PRK14098 glycogen synthase; Provisional
Probab=99.98 E-value=4.5e-31 Score=257.78 Aligned_cols=210 Identities=16% Similarity=0.136 Sum_probs=165.8
Q ss_pred cceEEEcChhhhhhhh-----------------ccceee-cccCCCCccCccccH-------------------HHhhcC
Q 016975 94 CHKVIRLSAATQEYAN-----------------SIICNV-HGVNPKFLEIGKKKK-------------------EQQQNG 136 (379)
Q Consensus 94 ~d~vi~~S~~~~~~~~-----------------~~i~~i-~gvd~~~~~~~~~~~-------------------~~~~~~ 136 (379)
+|.|+++|+..++... .++..| ||||.+.|.|..... .++..+
T Consensus 221 ad~VitVS~~~a~ei~~~~~~~~gl~~~l~~~~~kl~~I~NGID~~~~~p~~d~~~~~~~~~~~~~~k~~~k~~l~~~lg 300 (489)
T PRK14098 221 ADLLTTTSPRYAEEIAGDGEEAFGLDKVLEERKMRLHGILNGIDTRQWNPSTDKLIKKRYSIERLDGKLENKKALLEEVG 300 (489)
T ss_pred cCcceeeCHHHHHHhCcCCCCCcChHHHHHhcCCCeeEEeCCccccccCCcccccccccCCcchhhhHHHHHHHHHHHhC
Confidence 7999999987663321 234444 999999887643210 111222
Q ss_pred C--CCCcceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcC--hHHHHHHHHhcCCeeEEecCCCCHH--HH
Q 016975 137 T--HAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED--FNQIQEAAEKLKIVVRVYPGRDHAD--LI 210 (379)
Q Consensus 137 ~--~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~l~v~~~g~~~~~~--~~ 210 (379)
. .++.+.|+++||+.+.||++.+++|+..+.+. +++|+|+|+|+. .+.+++++++++.++.|.|.+++.+ .+
T Consensus 301 l~~~~~~~~i~~vgRl~~~KG~d~li~a~~~l~~~--~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~ 378 (489)
T PRK14098 301 LPFDEETPLVGVIINFDDFQGAELLAESLEKLVEL--DIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLA 378 (489)
T ss_pred CCCccCCCEEEEeccccccCcHHHHHHHHHHHHhc--CcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHH
Confidence 2 23567999999999999999999999998753 799999999885 4678888888877899999988876 89
Q ss_pred HhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc-cccccc----CCCEEEeC--CHHHHHHHHHHHHh---CCCC-
Q 016975 211 FHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQ----FPNCRTYD--DRNGFVEATLKALA---EEPA- 279 (379)
Q Consensus 211 ~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-~e~i~~----~~~g~~~~--~~~~l~~~i~~~l~---~~~~- 279 (379)
|+.||+|++||.+|++|++.+|||+||+|+|+++.|+ .|.+.+ +.+|++++ |+++++++|.++++ ++..
T Consensus 379 ~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~~~~~~~~~ 458 (489)
T PRK14098 379 IAGLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALALYHDEERW 458 (489)
T ss_pred HHhCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHHHHcCHHHH
Confidence 9999999999999999999999999999999999965 677653 67899988 99999999998763 3322
Q ss_pred -CCcHH-HHhcCCHHHHHHHHHHHHhcc
Q 016975 280 -LPTEA-QRHQLSWESATERFLQVAELD 305 (379)
Q Consensus 280 -~~~~~-~~~~~sw~~~~~~~~~~~~~~ 305 (379)
.+..+ ..+.|||+.++++|+++|+..
T Consensus 459 ~~~~~~~~~~~fsw~~~a~~y~~lY~~~ 486 (489)
T PRK14098 459 EELVLEAMERDFSWKNSAEEYAQLYREL 486 (489)
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 23322 237899999999999999854
No 24
>PRK14099 glycogen synthase; Provisional
Probab=99.98 E-value=3.6e-31 Score=258.16 Aligned_cols=211 Identities=18% Similarity=0.205 Sum_probs=159.9
Q ss_pred cceEEEcChhhhhhhh----------------ccceee-cccCCCCccCcccc-------------------HHHhhcCC
Q 016975 94 CHKVIRLSAATQEYAN----------------SIICNV-HGVNPKFLEIGKKK-------------------KEQQQNGT 137 (379)
Q Consensus 94 ~d~vi~~S~~~~~~~~----------------~~i~~i-~gvd~~~~~~~~~~-------------------~~~~~~~~ 137 (379)
||.|+++|+..++... .++..| ||||++.|.|.... ..+++.+.
T Consensus 210 ad~vitVS~~~a~ei~~~~~g~gl~~~l~~~~~ki~vI~NGID~~~f~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl 289 (485)
T PRK14099 210 ADRITTVSPTYALEIQGPEAGMGLDGLLRQRADRLSGILNGIDTAVWNPATDELIAATYDVETLAARAANKAALQARFGL 289 (485)
T ss_pred cCeeeecChhHHHHHhcccCCcChHHHHHhhCCCeEEEecCCchhhccccccchhhhcCChhHHHhHHHhHHHHHHHcCC
Confidence 6999999988653321 245555 99999888764321 11122232
Q ss_pred C--CCcceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcC--hHHHHHHHHhcCCee-EEecCCCCHHHHH-
Q 016975 138 H--AFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED--FNQIQEAAEKLKIVV-RVYPGRDHADLIF- 211 (379)
Q Consensus 138 ~--~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~l~v-~~~g~~~~~~~~~- 211 (379)
. ++.+.++++||+.++||++.+++|+..+.+. +++|+|+|+|+. .+.+++++++++.++ .+.|..++...+|
T Consensus 290 ~~~~~~~li~~VgRL~~~KG~d~Li~A~~~l~~~--~~~lvivG~G~~~~~~~l~~l~~~~~~~v~~~~G~~~~l~~~~~ 367 (485)
T PRK14099 290 DPDPDALLLGVISRLSWQKGLDLLLEALPTLLGE--GAQLALLGSGDAELEARFRAAAQAYPGQIGVVIGYDEALAHLIQ 367 (485)
T ss_pred CcccCCcEEEEEecCCccccHHHHHHHHHHHHhc--CcEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCHHHHHHHH
Confidence 2 3467899999999999999999999988753 789999999874 567888877766565 4567622222655
Q ss_pred hhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc-ccccccC---------CCEEEeC--CHHHHHHHHHH---HHhC
Q 016975 212 HDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQF---------PNCRTYD--DRNGFVEATLK---ALAE 276 (379)
Q Consensus 212 ~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-~e~i~~~---------~~g~~~~--~~~~l~~~i~~---~l~~ 276 (379)
+.||+||+||.+|+||++.+|||+||+|+|+|++|+ .|++.++ .+|++++ |+++++++|.+ ++++
T Consensus 368 a~aDifv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~ai~~a~~l~~d 447 (485)
T PRK14099 368 AGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSPVTADALAAALRKTAALFAD 447 (485)
T ss_pred hcCCEEEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCCCCHHHHHHHHHHHHHHhcC
Confidence 579999999999999999999999999888899955 7877765 5899988 99999999987 5555
Q ss_pred CCC--CCcHHHH-hcCCHHHHHHHHHHHHhccc
Q 016975 277 EPA--LPTEAQR-HQLSWESATERFLQVAELDQ 306 (379)
Q Consensus 277 ~~~--~~~~~~~-~~~sw~~~~~~~~~~~~~~~ 306 (379)
+.. .++++++ +.|||+.++++++++|+...
T Consensus 448 ~~~~~~l~~~~~~~~fSw~~~a~~y~~lY~~l~ 480 (485)
T PRK14099 448 PVAWRRLQRNGMTTDVSWRNPAQHYAALYRSLV 480 (485)
T ss_pred HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHH
Confidence 443 4444333 78999999999999999653
No 25
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=99.98 E-value=8.8e-31 Score=256.70 Aligned_cols=209 Identities=18% Similarity=0.232 Sum_probs=167.4
Q ss_pred cceEEEcChhhhh-hhh---------------ccceee-cccCCCCccCcccc-------------------HHHhhcCC
Q 016975 94 CHKVIRLSAATQE-YAN---------------SIICNV-HGVNPKFLEIGKKK-------------------KEQQQNGT 137 (379)
Q Consensus 94 ~d~vi~~S~~~~~-~~~---------------~~i~~i-~gvd~~~~~~~~~~-------------------~~~~~~~~ 137 (379)
||.++++|+...+ +.. .++..| ||+|.+.|.|.... ..+.+.+.
T Consensus 206 ad~v~tVS~~~~~ei~~~~~~~~l~~~l~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl 285 (473)
T TIGR02095 206 ADRVTTVSPTYAREILTPEFGYGLDGVLKARSGKLRGILNGIDTEVWNPATDPYLKANYSADDLAGKAENKEALQEELGL 285 (473)
T ss_pred CCcCeecCHhHHHHhcCCcCCccchhHHHhcCCCeEEEeCCCCccccCCCCCcccccCcCccchhhhhhhHHHHHHHcCC
Confidence 7999999977543 221 244455 99999988764221 11222232
Q ss_pred C--CCcceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCc--ChHHHHHHHHhcCCeeEEecCCCCHH--HHH
Q 016975 138 H--AFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGE--DFNQIQEAAEKLKIVVRVYPGRDHAD--LIF 211 (379)
Q Consensus 138 ~--~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~--~~~~l~~~~~~~~l~v~~~g~~~~~~--~~~ 211 (379)
. ++++.|+|+||+.++||++.+++++.++.+. +++|+|+|+|+ ..+++++++++.+.++.+.+..+++. .+|
T Consensus 286 ~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~--~~~lvi~G~g~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~ 363 (473)
T TIGR02095 286 PVDDDVPLFGVISRLTQQKGVDLLLAALPELLEL--GGQLVVLGTGDPELEEALRELAERYPGNVRVIIGYDEALAHLIY 363 (473)
T ss_pred CccCCCCEEEEEecCccccChHHHHHHHHHHHHc--CcEEEEECCCCHHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHH
Confidence 2 2578999999999999999999999998764 59999999995 35678888877777788888877766 899
Q ss_pred hhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc-ccccccC------CCEEEeC--CHHHHHHHHHHHHh----CCC
Q 016975 212 HDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQF------PNCRTYD--DRNGFVEATLKALA----EEP 278 (379)
Q Consensus 212 ~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-~e~i~~~------~~g~~~~--~~~~l~~~i~~~l~----~~~ 278 (379)
+.||++++||.+|++|++++|||+||+|||+|+.|+ .|++.++ .+|++++ |+++++++|.+++. ++.
T Consensus 364 ~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~~~~~~~~ 443 (473)
T TIGR02095 364 AGADFILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAESGTGFLFEEYDPGALLAALSRALRLYRQDPS 443 (473)
T ss_pred HhCCEEEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHHhcCHH
Confidence 999999999999999999999999999999999955 8899887 8999987 99999999999887 443
Q ss_pred C--CCcHHHH-hcCCHHHHHHHHHHHHhc
Q 016975 279 A--LPTEAQR-HQLSWESATERFLQVAEL 304 (379)
Q Consensus 279 ~--~~~~~~~-~~~sw~~~~~~~~~~~~~ 304 (379)
. ++++++. +.|||+.++++|+++|+.
T Consensus 444 ~~~~~~~~~~~~~fsw~~~a~~~~~~Y~~ 472 (473)
T TIGR02095 444 LWEALQKNAMSQDFSWDKSAKQYVELYRS 472 (473)
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHh
Confidence 2 4444443 689999999999999974
No 26
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.97 E-value=8e-31 Score=251.60 Aligned_cols=207 Identities=14% Similarity=0.095 Sum_probs=162.7
Q ss_pred cceEEEcChhhhhhhh----ccceee-cccCCCCccCccccHHHhh--cCCCCCcceEEEEEe-cccccCHHHHHHHHHH
Q 016975 94 CHKVIRLSAATQEYAN----SIICNV-HGVNPKFLEIGKKKKEQQQ--NGTHAFAKGAYYIGK-MVWSKGYKELLELLDD 165 (379)
Q Consensus 94 ~d~vi~~S~~~~~~~~----~~i~~i-~gvd~~~~~~~~~~~~~~~--~~~~~~~~~il~vgr-l~~~Kg~~~li~a~~~ 165 (379)
||.+|++|+..++... .++.++ ||+|.+.|.+......... ....++++.++|+|| +.+.||++.+++|+..
T Consensus 157 ad~vi~~s~~~~~~~~~~~~~ki~vI~ngvd~~~f~~~~~~~~~~~~~~~~~~~~~~i~~vgR~l~~~Kg~~~ll~a~~~ 236 (396)
T cd03818 157 ADAGVSPTRWQRSTFPAELRSRISVIHDGIDTDRLRPDPQARLRLPNGRVLTPGDEVITFVARNLEPYRGFHVFMRALPR 236 (396)
T ss_pred CCEEECCCHHHHhhCcHhhccceEEeCCCccccccCCCchhhhcccccccCCCCCeEEEEECCCcccccCHHHHHHHHHH
Confidence 7999999988775443 456666 8999988876543221111 111245678999997 9999999999999999
Q ss_pred hHhhcCCcEEEEEcCCcC--------hH-HHHHHHHhc----C-CeeEEecCCCCHH--HHHhhcCEEEecCCCCcchhH
Q 016975 166 HQKELAGLEVDLYGNGED--------FN-QIQEAAEKL----K-IVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTT 229 (379)
Q Consensus 166 l~~~~~~~~l~i~G~g~~--------~~-~l~~~~~~~----~-l~v~~~g~~~~~~--~~~~~~dv~v~ps~~E~~~~~ 229 (379)
+.+..|+++|+|+|++.. .+ ..++..+++ + .++.|+|.+++.+ .+|+.||++++||..|++|++
T Consensus 237 l~~~~~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~ 316 (396)
T cd03818 237 LLRARPDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLDLSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWS 316 (396)
T ss_pred HHHHCCCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhcccCcceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchH
Confidence 998889999999997321 11 122222222 2 3788999998888 999999999999999999999
Q ss_pred HHHHHHcCCeEEecCCCc-ccccccCCCEEEeC--CHHHHHHHHHHHHhCCCC--CCcHHHH----hcCCHHHHHHHHHH
Q 016975 230 TAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQR----HQLSWESATERFLQ 300 (379)
Q Consensus 230 ~~EAma~G~PVI~t~~g~-~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~~~----~~~sw~~~~~~~~~ 300 (379)
++||||||+|||+|+.|+ .|++.++.+|++++ |+++++++|.++++++.. .++++++ ++|||+.+++++++
T Consensus 317 llEAmA~G~PVIas~~~g~~e~i~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~l~~~ar~~~~~~fs~~~~~~~~~~ 396 (396)
T cd03818 317 LLEAMACGCLVVGSDTAPVREVITDGENGLLVDFFDPDALAAAVIELLDDPARRARLRRAARRTALRYDLLSVCLPRQLA 396 (396)
T ss_pred HHHHHHCCCCEEEcCCCCchhhcccCCceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhccHHHHHHHHhC
Confidence 999999999999999955 89999999999987 899999999999998754 4555443 67999999998863
No 27
>PLN02939 transferase, transferring glycosyl groups
Probab=99.97 E-value=1.1e-30 Score=261.92 Aligned_cols=212 Identities=17% Similarity=0.221 Sum_probs=166.6
Q ss_pred hcceEEEcChhhh-hhhh--------------ccceee-cccCCCCccCccc-------------------cHHHhhcCC
Q 016975 93 YCHKVIRLSAATQ-EYAN--------------SIICNV-HGVNPKFLEIGKK-------------------KKEQQQNGT 137 (379)
Q Consensus 93 ~~d~vi~~S~~~~-~~~~--------------~~i~~i-~gvd~~~~~~~~~-------------------~~~~~~~~~ 137 (379)
+||.|++||...+ ++.. .++..| ||||++.|.|... ...+...+.
T Consensus 693 ~AD~VtTVSptYA~EI~te~G~GL~~~L~~~~~Kl~gIlNGID~e~wnPatD~~L~~~Ys~~dl~GK~~nK~aLRkelGL 772 (977)
T PLN02939 693 YSNIVTTVSPTYAQEVRSEGGRGLQDTLKFHSKKFVGILNGIDTDTWNPSTDRFLKVQYNANDLQGKAANKAALRKQLGL 772 (977)
T ss_pred hCCeeEeeeHHHHHHHHHHhccchHHHhccccCCceEEecceehhhcCCccccccccccChhhhhhhhhhhHHHHHHhCC
Confidence 4899999997755 3221 234445 9999998876532 111223333
Q ss_pred C---CCcceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcC---hHHHHHHHHhcCC--eeEEecCCCCHH-
Q 016975 138 H---AFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED---FNQIQEAAEKLKI--VVRVYPGRDHAD- 208 (379)
Q Consensus 138 ~---~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~---~~~l~~~~~~~~l--~v~~~g~~~~~~- 208 (379)
+ ++.++|+||||+.+.||++.+++|+..+.. ++++|+|+|+|++ .+.+++++++++. +|.|.|.+++..
T Consensus 773 ~~~d~d~pLIg~VGRL~~QKGiDlLleA~~~Ll~--~dvqLVIvGdGp~~~~e~eL~~La~~l~l~drV~FlG~~de~la 850 (977)
T PLN02939 773 SSADASQPLVGCITRLVPQKGVHLIRHAIYKTAE--LGGQFVLLGSSPVPHIQREFEGIADQFQSNNNIRLILKYDEALS 850 (977)
T ss_pred CcccccceEEEEeecCCcccChHHHHHHHHHHhh--cCCEEEEEeCCCcHHHHHHHHHHHHHcCCCCeEEEEeccCHHHH
Confidence 2 346899999999999999999999988764 4789999999986 3567778887765 688889888775
Q ss_pred -HHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc-cccccc---------CCCEEEeC--CHHHHHHHHHHHHh
Q 016975 209 -LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQ---------FPNCRTYD--DRNGFVEATLKALA 275 (379)
Q Consensus 209 -~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-~e~i~~---------~~~g~~~~--~~~~l~~~i~~~l~ 275 (379)
.+|+.+|+||+||.+|+||++++|||+||+|+|++++|+ .|.|.+ +.||++++ |+++|+++|.+++.
T Consensus 851 h~IYAaADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 851 HSIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLTPDEQGLNSALERAFN 930 (977)
T ss_pred HHHHHhCCEEEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEecCCCHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999966 777764 47899987 99999999998876
Q ss_pred ----CCCC--CCcHHH-HhcCCHHHHHHHHHHHHhccc
Q 016975 276 ----EEPA--LPTEAQ-RHQLSWESATERFLQVAELDQ 306 (379)
Q Consensus 276 ----~~~~--~~~~~~-~~~~sw~~~~~~~~~~~~~~~ 306 (379)
++.. .++.+. ...|||+.++++|.++|+...
T Consensus 931 ~~~~dpe~~~~L~~~am~~dFSWe~~A~qYeeLY~~ll 968 (977)
T PLN02939 931 YYKRKPEVWKQLVQKDMNIDFSWDSSASQYEELYQRAV 968 (977)
T ss_pred HhccCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 3332 344433 378999999999999999654
No 28
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=99.97 E-value=2.6e-30 Score=247.26 Aligned_cols=270 Identities=16% Similarity=0.105 Sum_probs=189.9
Q ss_pred CCCCcEEEEcCCcchhhhhcccccccc-cCcEEEEeccChHHHHHHh-hcchHHHHHHHHHHHHHHHHhcceEEEcChhh
Q 016975 27 DEVADIAVLEEPEHLTWFHHGKRWKTK-FRYVVGIVHTNYLEYVKRE-KNGRLQAFLLKYANSWLVDIYCHKVIRLSAAT 104 (379)
Q Consensus 27 ~~~~DvV~~~~p~~~~~~~~~~~~~~~-~~~vv~~~h~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~ 104 (379)
..++|+||++.+...... ....+. ..|+|.++|+..+...... ...... .+..++.+. ....+|.++++|+.+
T Consensus 81 ~~~~divh~~~~~~~~~~---~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~ad~vi~~S~~~ 155 (388)
T TIGR02149 81 PVDADVVHSHTWYTFLAG---HLAKKLYDKPLVVTAHSLEPLRPWKEEQLGGGY-KLSSWAEKT-AIEAADRVIAVSGGM 155 (388)
T ss_pred CCCCCeEeecchhhhhHH---HHHHHhcCCCEEEEeecccccccccccccccch-hHHHHHHHH-HHhhCCEEEEccHHH
Confidence 347999999875432111 111122 2389999998643211000 000000 111222222 112269999999876
Q ss_pred hhhhh--------ccceee-cccCCCCccCccccHHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhhcCCcEE
Q 016975 105 QEYAN--------SIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEV 175 (379)
Q Consensus 105 ~~~~~--------~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l 175 (379)
++... .++.++ ||+|...+.+........+.+..++++.++|+||+.+.||++.+++++.++. +++++
T Consensus 156 ~~~~~~~~~~~~~~~i~vi~ng~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~---~~~~l 232 (388)
T TIGR02149 156 REDILKYYPDLDPEKVHVIYNGIDTKEYKPDDGNVVLDRYGIDRSRPYILFVGRITRQKGVPHLLDAVHYIP---KDVQV 232 (388)
T ss_pred HHHHHHHcCCCCcceEEEecCCCChhhcCCCchHHHHHHhCCCCCceEEEEEcccccccCHHHHHHHHHHHh---hcCcE
Confidence 64332 234444 8999887766543333344444556778999999999999999999999874 46889
Q ss_pred EEEcCCcCh----HHHHHHHHhcCC---eeEEe-cCCCCHH--HHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 176 DLYGNGEDF----NQIQEAAEKLKI---VVRVY-PGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 176 ~i~G~g~~~----~~l~~~~~~~~l---~v~~~-g~~~~~~--~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
+++|+|++. +++++..++++. ++.++ |.+++.+ ++|+.||++|+||..|++|++++|||+||+|||+|+.
T Consensus 233 ~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~PvI~s~~ 312 (388)
T TIGR02149 233 VLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSNAEVFVCPSIYEPLGIVNLEAMACGTPVVASAT 312 (388)
T ss_pred EEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHhCCEEEeCCccCCCChHHHHHHHcCCCEEEeCC
Confidence 999877663 445555555544 36666 5577776 9999999999999999999999999999999999999
Q ss_pred Cc-ccccccCCCEEEeC--CH------HHHHHHHHHHHhCCCC--CCcHHH----HhcCCHHHHHHHHHHHHhc
Q 016975 246 PS-NDFFKQFPNCRTYD--DR------NGFVEATLKALAEEPA--LPTEAQ----RHQLSWESATERFLQVAEL 304 (379)
Q Consensus 246 g~-~e~i~~~~~g~~~~--~~------~~l~~~i~~~l~~~~~--~~~~~~----~~~~sw~~~~~~~~~~~~~ 304 (379)
|+ .|++.++.+|++++ |+ ++++++|.++++++.. .++..+ .++|||+.+++++.+.|+.
T Consensus 313 ~~~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~y~~ 386 (388)
T TIGR02149 313 GGIPEVVVDGETGFLVPPDNSDADGFQAELAKAINILLADPELAKKMGIAGRKRAEEEFSWGSIAKKTVEMYRK 386 (388)
T ss_pred CCHHHHhhCCCceEEcCCCCCcccchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 55 88999999999987 66 8999999999988764 455433 3789999999999999984
No 29
>PLN02316 synthase/transferase
Probab=99.97 E-value=1.1e-29 Score=259.07 Aligned_cols=259 Identities=19% Similarity=0.155 Sum_probs=186.3
Q ss_pred CCCcEEEEcCCcchhhhhc-ccc-cc---cccCcEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEEEcCh
Q 016975 28 EVADIAVLEEPEHLTWFHH-GKR-WK---TKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIRLSA 102 (379)
Q Consensus 28 ~~~DvV~~~~p~~~~~~~~-~~~-~~---~~~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~ 102 (379)
.+|||||+|+-. .++... +.. +. ....|+|.++|+.. +.. .. +... ..++|.|+++|+
T Consensus 708 ~~PDIIHaHDW~-talva~llk~~~~~~~~~~~p~V~TiHnl~--~~~--------n~----lk~~--l~~AD~ViTVS~ 770 (1036)
T PLN02316 708 FHPDIIHCHDWS-SAPVAWLFKDHYAHYGLSKARVVFTIHNLE--FGA--------NH----IGKA--MAYADKATTVSP 770 (1036)
T ss_pred CCCCEEEECCCh-HHHHHHHHHHhhhhhccCCCCEEEEeCCcc--cch--------hH----HHHH--HHHCCEEEeCCH
Confidence 589999999732 222210 000 00 11138999999743 110 11 1111 133699999998
Q ss_pred hhh-hhhh--------ccceee-cccCCCCccCcccc--------------------HHHhhcCCC-CCcceEEEEEecc
Q 016975 103 ATQ-EYAN--------SIICNV-HGVNPKFLEIGKKK--------------------KEQQQNGTH-AFAKGAYYIGKMV 151 (379)
Q Consensus 103 ~~~-~~~~--------~~i~~i-~gvd~~~~~~~~~~--------------------~~~~~~~~~-~~~~~il~vgrl~ 151 (379)
..+ ++.. .++..| ||||++.|.|.... ..+...+.. ++.++|+|+||+.
T Consensus 771 tya~EI~~~~~l~~~~~Kl~vI~NGID~~~w~P~tD~~lp~~y~~~~~~~gK~~~k~~Lr~~lGL~~~d~plVg~VGRL~ 850 (1036)
T PLN02316 771 TYSREVSGNSAIAPHLYKFHGILNGIDPDIWDPYNDNFIPVPYTSENVVEGKRAAKEALQQRLGLKQADLPLVGIITRLT 850 (1036)
T ss_pred HHHHHHHhccCcccccCCEEEEECCccccccCCcccccccccCCchhhhhhhhhhHHHHHHHhCCCcccCeEEEEEeccc
Confidence 755 3221 245555 99999877553210 011222332 3578999999999
Q ss_pred cccCHHHHHHHHHHhHhhcCCcEEEEEcCCcC---hHHHHHHHHhcCC----eeEEecCCCCHH--HHHhhcCEEEecCC
Q 016975 152 WSKGYKELLELLDDHQKELAGLEVDLYGNGED---FNQIQEAAEKLKI----VVRVYPGRDHAD--LIFHDYKVFLNPST 222 (379)
Q Consensus 152 ~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~---~~~l~~~~~~~~l----~v~~~g~~~~~~--~~~~~~dv~v~ps~ 222 (379)
+.||++.|++|+..+.+ .+++|+|+|+|++ ...++++++++++ ++.|.+..+... .+|+.||+||+||.
T Consensus 851 ~qKGvdlLi~Al~~ll~--~~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iyaaADiflmPS~ 928 (1036)
T PLN02316 851 HQKGIHLIKHAIWRTLE--RNGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYAGADFILVPSI 928 (1036)
T ss_pred cccCHHHHHHHHHHHhh--cCcEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHHhCcEEEeCCc
Confidence 99999999999998865 3799999999987 3567778886653 577888776654 79999999999999
Q ss_pred CCcchhHHHHHHHcCCeEEecCCCc-ccccccC-------------CCEEEeC--CHHHHHHHHHHHHhCCCC---CCcH
Q 016975 223 TDVVCTTTAEALAMGKIVVCANHPS-NDFFKQF-------------PNCRTYD--DRNGFVEATLKALAEEPA---LPTE 283 (379)
Q Consensus 223 ~E~~~~~~~EAma~G~PVI~t~~g~-~e~i~~~-------------~~g~~~~--~~~~l~~~i~~~l~~~~~---~~~~ 283 (379)
+|++|++.+|||+||+|+|++++|+ .|.|.++ .+|++++ |+++++.+|.+++.+... .++.
T Consensus 929 ~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL~~~~~~~~~~~~ 1008 (1036)
T PLN02316 929 FEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAISAWYDGRDWFNS 1008 (1036)
T ss_pred ccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCceEEeCCCCHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 9999999999999999999999966 8888773 6899998 999999999999986422 2232
Q ss_pred H----HHhcCCHHHHHHHHHHHHhcc
Q 016975 284 A----QRHQLSWESATERFLQVAELD 305 (379)
Q Consensus 284 ~----~~~~~sw~~~~~~~~~~~~~~ 305 (379)
. ..+.|||+.++++|+++|+.+
T Consensus 1009 ~~r~~m~~dFSW~~~A~~Y~~LY~~a 1034 (1036)
T PLN02316 1009 LCKRVMEQDWSWNRPALDYMELYHSA 1034 (1036)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence 2 237899999999999999864
No 30
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.97 E-value=1.6e-29 Score=242.69 Aligned_cols=274 Identities=14% Similarity=0.088 Sum_probs=188.7
Q ss_pred cccccCCCCCCcEEEEcCCcchhhhhcccccccccCcEEEEeccChHHHHHHhh--cchHHHHHH----HHHHHHHHHHh
Q 016975 20 DISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREK--NGRLQAFLL----KYANSWLVDIY 93 (379)
Q Consensus 20 ~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~ 93 (379)
.+.+.+.+.++|+||++++....+. .......|.|...|+.......... .....+++. +.+..+....+
T Consensus 95 ~l~~~~~~~~~D~v~~~~~~~~~~~----~~~~~~~p~i~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 170 (397)
T TIGR03087 95 WVNALLAAEPVDAIVVFSSAMAQYV----TPHVRGVPRIVDFVDVDSDKWLQYARTKRWPLRWIYRREGRLLLAYERAIA 170 (397)
T ss_pred HHHHHHhhCCCCEEEEeccccceec----cccccCCCeEeehhhHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHH
Confidence 3445666789999999865433222 1111123888888864332221111 111112221 11222222222
Q ss_pred --cceEEEcChhhhhhhh-------ccceee-cccCCCCccCccccHHHhhcCCCCCcceEEEEEecccccCHHHHH---
Q 016975 94 --CHKVIRLSAATQEYAN-------SIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELL--- 160 (379)
Q Consensus 94 --~d~vi~~S~~~~~~~~-------~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li--- 160 (379)
+|.++++|+..++... .++.++ ||+|.+.|.+..... ....++++.++|+|++.+.||++.++
T Consensus 171 ~~ad~vi~~S~~~~~~l~~~~~~~~~~v~vipngvd~~~f~~~~~~~----~~~~~~~~~ilf~G~l~~~k~~~~l~~~~ 246 (397)
T TIGR03087 171 ARFDAATFVSRAEAELFRRLAPEAAGRITAFPNGVDADFFSPDRDYP----NPYPPGKRVLVFTGAMDYWPNIDAVVWFA 246 (397)
T ss_pred hhCCeEEEcCHHHHHHHHHhCCCCCCCeEEeecccchhhcCCCcccc----CCCCCCCcEEEEEEecCCccCHHHHHHHH
Confidence 7999999987665433 234444 899998886543211 11123356899999999999999988
Q ss_pred -HHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCC-CCcchhHHHHHHHcCC
Q 016975 161 -ELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPST-TDVVCTTTAEALAMGK 238 (379)
Q Consensus 161 -~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~-~E~~~~~~~EAma~G~ 238 (379)
+++..+.+..|+++|+|+|+|+. .+++++.. ..++.|.|.+++...+|+.||++|+||. .||+|++++||||||+
T Consensus 247 ~~~~~~l~~~~p~~~l~ivG~g~~-~~~~~l~~--~~~V~~~G~v~~~~~~~~~adv~v~Ps~~~eG~~~~~lEAma~G~ 323 (397)
T TIGR03087 247 ERVFPAVRARRPAAEFYIVGAKPS-PAVRALAA--LPGVTVTGSVADVRPYLAHAAVAVAPLRIARGIQNKVLEAMAMAK 323 (397)
T ss_pred HHHHHHHHHHCCCcEEEEECCCCh-HHHHHhcc--CCCeEEeeecCCHHHHHHhCCEEEecccccCCcccHHHHHHHcCC
Confidence 45666667779999999999986 34444332 2368899999877799999999999997 5999999999999999
Q ss_pred eEEecCCCcccccccCCCEEEeC-CHHHHHHHHHHHHhCCCC--CCcHHHH----hcCCHHHHHHHHHHHHhc
Q 016975 239 IVVCANHPSNDFFKQFPNCRTYD-DRNGFVEATLKALAEEPA--LPTEAQR----HQLSWESATERFLQVAEL 304 (379)
Q Consensus 239 PVI~t~~g~~e~i~~~~~g~~~~-~~~~l~~~i~~~l~~~~~--~~~~~~~----~~~sw~~~~~~~~~~~~~ 304 (379)
|||+|+.+...+.....+|++++ |+++++++|.++++++.. .++.+++ ++|||+.+++++.++|..
T Consensus 324 PVV~t~~~~~~i~~~~~~g~lv~~~~~~la~ai~~ll~~~~~~~~~~~~ar~~v~~~fsw~~~~~~~~~~l~~ 396 (397)
T TIGR03087 324 PVVASPEAAEGIDALPGAELLVAADPADFAAAILALLANPAEREELGQAARRRVLQHYHWPRNLARLDALLEQ 396 (397)
T ss_pred CEEecCcccccccccCCcceEeCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcC
Confidence 99999986544444445687776 999999999999988764 5555443 789999999999998863
No 31
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.97 E-value=6.8e-30 Score=239.08 Aligned_cols=248 Identities=13% Similarity=0.064 Sum_probs=190.5
Q ss_pred cccccCCCCCCcEEEEcCCcchhhhhcccccccccCcEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEEE
Q 016975 20 DISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIR 99 (379)
Q Consensus 20 ~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 99 (379)
.+.+++++.+||+||++......+. ......|+|...|+....... . . .......+.+++
T Consensus 78 ~~~~~~~~~~~Divh~~~~~~~~~~-----~~~~~~~~v~~~h~~~~~~~~--------~-~------~~~~~~~~~~~~ 137 (335)
T cd03802 78 LAERALAAGDFDIVHNHSLHLPLPF-----ARPLPVPVVTTLHGPPDPELL--------K-L------YYAARPDVPFVS 137 (335)
T ss_pred HHHHHHhcCCCCEEEecCcccchhh-----hcccCCCEEEEecCCCCcccc--------h-H------HHhhCcCCeEEE
Confidence 4567778899999999876655432 111223889999987643331 0 0 111122478999
Q ss_pred cChhhhhhhhc--cceee-cccCCCCccCccccHHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEE
Q 016975 100 LSAATQEYANS--IICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVD 176 (379)
Q Consensus 100 ~S~~~~~~~~~--~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~ 176 (379)
+|+........ ++.++ ||+|.+.|.+.. ..+..++|+||+.+.||++.+++++.+ .+++|+
T Consensus 138 ~s~~~~~~~~~~~~~~vi~ngvd~~~~~~~~-----------~~~~~i~~~Gr~~~~Kg~~~li~~~~~-----~~~~l~ 201 (335)
T cd03802 138 ISDAQRRPWPPLPWVATVHNGIDLDDYPFRG-----------PKGDYLLFLGRISPEKGPHLAIRAARR-----AGIPLK 201 (335)
T ss_pred ecHHHHhhcccccccEEecCCcChhhCCCCC-----------CCCCEEEEEEeeccccCHHHHHHHHHh-----cCCeEE
Confidence 99887755433 45555 899988775411 124579999999999999999999764 479999
Q ss_pred EEcCCcChHHHHHHHHhc---CCeeEEecCCCCHH--HHHhhcCEEEecCC-CCcchhHHHHHHHcCCeEEecCCCc-cc
Q 016975 177 LYGNGEDFNQIQEAAEKL---KIVVRVYPGRDHAD--LIFHDYKVFLNPST-TDVVCTTTAEALAMGKIVVCANHPS-ND 249 (379)
Q Consensus 177 i~G~g~~~~~l~~~~~~~---~l~v~~~g~~~~~~--~~~~~~dv~v~ps~-~E~~~~~~~EAma~G~PVI~t~~g~-~e 249 (379)
++|+|++...+.....+. ..++.|+|.+++.+ .+|+.+|++++||. .|+||++++||||||+|||+|+.|+ .|
T Consensus 202 i~G~~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~~~~e 281 (335)
T cd03802 202 LAGPVSDPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRRGAVPE 281 (335)
T ss_pred EEeCCCCHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCCCchh
Confidence 999998877666655544 45899999999887 89999999999997 5999999999999999999999955 88
Q ss_pred ccccCCCEEEeCCHHHHHHHHHHHHhCCCCCCcHHHHhcCCHHHHHHHHHHHHh
Q 016975 250 FFKQFPNCRTYDDRNGFVEATLKALAEEPALPTEAQRHQLSWESATERFLQVAE 303 (379)
Q Consensus 250 ~i~~~~~g~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~sw~~~~~~~~~~~~ 303 (379)
++.++.+|++++++++++++|.++...+.....+...++|||+.++++++++|+
T Consensus 282 ~i~~~~~g~l~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~s~~~~~~~~~~~y~ 335 (335)
T cd03802 282 VVEDGVTGFLVDSVEELAAAVARADRLDRAACRRRAERRFSAARMVDDYLALYR 335 (335)
T ss_pred heeCCCcEEEeCCHHHHHHHHHHHhccHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 999988999999999999999998664433333344589999999999999985
No 32
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=99.97 E-value=8.7e-30 Score=245.24 Aligned_cols=259 Identities=14% Similarity=0.037 Sum_probs=184.0
Q ss_pred CCCCcEEEEcCCcchhhhhcccccccccCcEEEEeccChH--HHHHH--hhc---------------chHHHHHHHHHHH
Q 016975 27 DEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYL--EYVKR--EKN---------------GRLQAFLLKYANS 87 (379)
Q Consensus 27 ~~~~DvV~~~~p~~~~~~~~~~~~~~~~~~vv~~~h~~~~--~~~~~--~~~---------------~~~~~~~~~~~~~ 87 (379)
+.+|||++.+.....++.. +..+. ..|+|..+|-... +.... .+. +..+..+++.+..
T Consensus 105 ~~~pDv~i~~~g~~~~~~~-~~~~~--~~~~i~y~h~P~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~y~~~~~~ 181 (419)
T cd03806 105 KLVPDIFIDTMGYPFTYPL-VRLLG--GCPVGAYVHYPTISTDMLQKVRSREASYNNSATIARSPVLSKAKLLYYRLFAF 181 (419)
T ss_pred hcCCCEEEEcCCcccHHHH-HHHhc--CCeEEEEecCCcchHHHHHHHhhccccccCccchhccchHHHHHHHHHHHHHH
Confidence 4579998887755554441 11223 2389999993210 22211 111 1222223333222
Q ss_pred HHHHH--hcceEEEcChhhhhhhhc------cceee-cccCCCCccCccccHHHhhcCCCCCcceEEEEEecccccCHHH
Q 016975 88 WLVDI--YCHKVIRLSAATQEYANS------IICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKE 158 (379)
Q Consensus 88 ~~~~~--~~d~vi~~S~~~~~~~~~------~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~ 158 (379)
+.... .||.++++|+.+++...+ ++.++ +|+|.+.+.+.... ....++.|+|+||+.+.||++.
T Consensus 182 ~~~~~~~~aD~ii~~S~~~~~~~~~~~~~~~~~~vi~~gvd~~~~~~~~~~-------~~~~~~~il~vgr~~~~K~~~~ 254 (419)
T cd03806 182 LYGLAGSFADVVMVNSTWTRNHIRSLWKRNTKPSIVYPPCDVEELLKLPLD-------EKTRENQILSIAQFRPEKNHPL 254 (419)
T ss_pred HHHHHhhcCCEEEECCHHHHHHHHHHhCcCCCcEEEcCCCCHHHhcccccc-------cccCCcEEEEEEeecCCCCHHH
Confidence 22222 289999999887754432 34444 78887666433210 1223568999999999999999
Q ss_pred HHHHHHHhHhhcC-----CcEEEEEcCCcC------hHHHHHHHHhcCC--eeEEecCCCCHH--HHHhhcCEEEecCCC
Q 016975 159 LLELLDDHQKELA-----GLEVDLYGNGED------FNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPSTT 223 (379)
Q Consensus 159 li~a~~~l~~~~~-----~~~l~i~G~g~~------~~~l~~~~~~~~l--~v~~~g~~~~~~--~~~~~~dv~v~ps~~ 223 (379)
+++|+..+.+..+ +++|+|+|++.. .++++++++++++ +|.|+|.+++++ ++|+.||++|+||..
T Consensus 255 li~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~adv~v~~s~~ 334 (419)
T cd03806 255 QLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELSTASIGLHTMWN 334 (419)
T ss_pred HHHHHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHhCeEEEECCcc
Confidence 9999999987765 499999998742 4668888888776 688999998888 999999999999999
Q ss_pred CcchhHHHHHHHcCCeEEecCC-Cc-ccccc---cCCCEEEeCCHHHHHHHHHHHHhCCCC---CCcH---HHHhcCCHH
Q 016975 224 DVVCTTTAEALAMGKIVVCANH-PS-NDFFK---QFPNCRTYDDRNGFVEATLKALAEEPA---LPTE---AQRHQLSWE 292 (379)
Q Consensus 224 E~~~~~~~EAma~G~PVI~t~~-g~-~e~i~---~~~~g~~~~~~~~l~~~i~~~l~~~~~---~~~~---~~~~~~sw~ 292 (379)
|+||++++||||||+|||+++. |+ .+++. ++.+|++++|+++++++|.+++++++. .+.. ...++|||+
T Consensus 335 E~Fgi~~lEAMa~G~pvIa~~~ggp~~~iv~~~~~g~~G~l~~d~~~la~ai~~ll~~~~~~~~~~~~~~~~~~~~fs~~ 414 (419)
T cd03806 335 EHFGIGVVEYMAAGLIPLAHASGGPLLDIVVPWDGGPTGFLASTAEEYAEAIEKILSLSEEERLRIRRAARSSVKRFSDE 414 (419)
T ss_pred CCcccHHHHHHHcCCcEEEEcCCCCchheeeccCCCCceEEeCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCHH
Confidence 9999999999999999999998 44 46777 789999999999999999999997654 2222 222789998
Q ss_pred HHH
Q 016975 293 SAT 295 (379)
Q Consensus 293 ~~~ 295 (379)
...
T Consensus 415 ~f~ 417 (419)
T cd03806 415 EFE 417 (419)
T ss_pred Hhc
Confidence 764
No 33
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=99.97 E-value=2e-29 Score=251.67 Aligned_cols=274 Identities=11% Similarity=0.130 Sum_probs=185.5
Q ss_pred CCCcEEEEcCCcchhhhhcccccccccC-cEEEEeccChHHHHHHhhcch--H--HHHHH-HHHHHHHHHHhcceEEEcC
Q 016975 28 EVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGR--L--QAFLL-KYANSWLVDIYCHKVIRLS 101 (379)
Q Consensus 28 ~~~DvV~~~~p~~~~~~~~~~~~~~~~~-~vv~~~h~~~~~~~~~~~~~~--~--~~~~~-~~~~~~~~~~~~d~vi~~S 101 (379)
.+||+||.|.... ++. +...++++. |.+.+.|+.-.......+... . +..+. +....+.....||.||+.|
T Consensus 384 ~~pDlIHahy~d~-glv--a~lla~~lgVP~v~t~HsL~~~K~~~~g~~~~~~e~~~~~~~r~~ae~~~~~~AD~IItsT 460 (784)
T TIGR02470 384 GKPDLIIGNYSDG-NLV--ASLLARKLGVTQCTIAHALEKTKYPDSDIYWQEFEDKYHFSCQFTADLIAMNAADFIITST 460 (784)
T ss_pred CCCCEEEECCCch-HHH--HHHHHHhcCCCEEEECCcchhhcccccccccccchhHHHhhhhhhHHHHHHhcCCEEEECc
Confidence 4799999986432 122 234555566 988898864221110000000 0 00111 1111222333479999999
Q ss_pred hhh-h-------hh--------------------hhccceee-cccCCCCccCccccHHH-------------------h
Q 016975 102 AAT-Q-------EY--------------------ANSIICNV-HGVNPKFLEIGKKKKEQ-------------------Q 133 (379)
Q Consensus 102 ~~~-~-------~~--------------------~~~~i~~i-~gvd~~~~~~~~~~~~~-------------------~ 133 (379)
..- . .+ ...++.++ .|+|++.|.|......+ .
T Consensus 461 ~qEi~~~~~~v~qY~s~~~ft~p~Ly~vvnGid~~~~Ki~VVpPGVD~~iF~P~~~~~~r~~~~~~~ie~ll~~~~~~~~ 540 (784)
T TIGR02470 461 YQEIAGTKDSVGQYESHQAFTMPGLYRVVHGIDVFDPKFNIVSPGADESIYFPYSDKEKRLTNLHPEIEELLFSLEDNDE 540 (784)
T ss_pred HHHhhhhhhhhhhhhhcccccccceeeeecCccCCcCCeEEECCCcChhhcCCCCchhhhhhhhhcchhhhccchhhHHH
Confidence 421 1 01 11233444 69998877664322111 1
Q ss_pred hcC--CCCCcceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcC------------hHHHHHHHHhcCC--e
Q 016975 134 QNG--THAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED------------FNQIQEAAEKLKI--V 197 (379)
Q Consensus 134 ~~~--~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~------------~~~l~~~~~~~~l--~ 197 (379)
..+ ..++++.|+++||+.+.||++.|++|+.++....++++|+|+|++.+ .+++.++++++++ +
T Consensus 541 ~~G~l~d~~kpiIl~VGRL~~~KGid~LIeA~~~l~~l~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~g~ 620 (784)
T TIGR02470 541 HYGYLKDPNKPIIFSMARLDRVKNLTGLVECYGRSPKLRELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLHGQ 620 (784)
T ss_pred HhCCCCCCCCcEEEEEeCCCccCCHHHHHHHHHHhHhhCCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCCCCe
Confidence 111 24567899999999999999999999988765556789999997642 2346667778776 7
Q ss_pred eEEecCC-CCHH--HHHh----hcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc-ccccccCCCEEEeC--CHHHHH
Q 016975 198 VRVYPGR-DHAD--LIFH----DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--DRNGFV 267 (379)
Q Consensus 198 v~~~g~~-~~~~--~~~~----~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-~e~i~~~~~g~~~~--~~~~l~ 267 (379)
|.|.|.. +..+ ++|+ .+|+||+||.+|+||++++||||||+|||+|+.|+ .|++.++.+|++++ |+++++
T Consensus 621 V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~GG~~EiV~dg~tGfLVdp~D~eaLA 700 (784)
T TIGR02470 621 IRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFGGPLEIIQDGVSGFHIDPYHGEEAA 700 (784)
T ss_pred EEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCCCHHHHhcCCCcEEEeCCCCHHHHH
Confidence 8888875 3333 5665 24799999999999999999999999999999966 99999999999998 999999
Q ss_pred HHHHHHHh----CCCC--CCcHHHH----hcCCHHHHHHHHHHHHhc
Q 016975 268 EATLKALA----EEPA--LPTEAQR----HQLSWESATERFLQVAEL 304 (379)
Q Consensus 268 ~~i~~~l~----~~~~--~~~~~~~----~~~sw~~~~~~~~~~~~~ 304 (379)
++|.++++ ++.. .++.+++ ++|||+.++++++.+...
T Consensus 701 ~aL~~ll~kll~dp~~~~~ms~~a~~rV~~~FSW~~~A~~ll~l~~~ 747 (784)
T TIGR02470 701 EKIVDFFEKCDEDPSYWQKISQGGLQRIYEKYTWKIYSERLLTLAGI 747 (784)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Confidence 99998763 4333 4555433 789999999999988753
No 34
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.97 E-value=3.4e-29 Score=241.19 Aligned_cols=273 Identities=13% Similarity=0.091 Sum_probs=188.0
Q ss_pred CCCCCCcEEEEcCCcchhhhhcccccccccC-cEEEEeccChHHHHHHh-hcchHHHHHHHHHHHHHHHHhcceEEEcCh
Q 016975 25 IPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKRE-KNGRLQAFLLKYANSWLVDIYCHKVIRLSA 102 (379)
Q Consensus 25 l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~-~vv~~~h~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~ 102 (379)
+...+||+||++++..+.....+..+++..+ |+|..+|+.+....... ........+..++.+++. ..||.+|++|+
T Consensus 91 ~~~~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~ad~ii~vS~ 169 (415)
T cd03816 91 YKLRPADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWHNYGYTILALKLGENHPLVRLAKWYEKLFG-RLADYNLCVTK 169 (415)
T ss_pred HhcCCCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcCCchHHHHhcccCCCCHHHHHHHHHHHHHh-hcCCEeeecCH
Confidence 4556899999987554322110122233334 89999998653322111 111111123344444422 23799999998
Q ss_pred hhhhhhh------ccceee-cccCCCCccCccccHHHhh------------------cCCCCCcceEEEEEecccccCHH
Q 016975 103 ATQEYAN------SIICNV-HGVNPKFLEIGKKKKEQQQ------------------NGTHAFAKGAYYIGKMVWSKGYK 157 (379)
Q Consensus 103 ~~~~~~~------~~i~~i-~gvd~~~~~~~~~~~~~~~------------------~~~~~~~~~il~vgrl~~~Kg~~ 157 (379)
.+++... +++.++ || +...|.+......... ....+....++++||+.+.||++
T Consensus 170 ~~~~~l~~~~~~~~ki~vI~Ng-~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~grl~~~K~~~ 248 (415)
T cd03816 170 AMKEDLQQFNNWKIRATVLYDR-PPEQFRPLPLEEKHELFLKLAKTFLTRELRIGAVQLSEERPALLVSSTSWTPDEDFG 248 (415)
T ss_pred HHHHHHHhhhccCCCeeecCCC-CHHHceeCcHHHHHHHHHhccccccccccccccceecCCCceEEEEeccccCCCCHH
Confidence 8775443 345555 66 3344443322111110 00123345788899999999999
Q ss_pred HHHHHHHHhHhh------cCCcEEEEEcCCcChHHHHHHHHhcCC-eeEEe-cCCCCHH--HHHhhcCEEEecCC---CC
Q 016975 158 ELLELLDDHQKE------LAGLEVDLYGNGEDFNQIQEAAEKLKI-VVRVY-PGRDHAD--LIFHDYKVFLNPST---TD 224 (379)
Q Consensus 158 ~li~a~~~l~~~------~~~~~l~i~G~g~~~~~l~~~~~~~~l-~v~~~-g~~~~~~--~~~~~~dv~v~ps~---~E 224 (379)
.+++|+..+.+. .|+++|+|+|+|+..+++++.++++++ ++.++ |.++.++ ++|+.||+++.|+. .|
T Consensus 249 ~li~A~~~l~~~~~~~~~~~~i~l~ivG~G~~~~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~ 328 (415)
T cd03816 249 ILLDALVAYEKSAATGPKLPKLLCIITGKGPLKEKYLERIKELKLKKVTIRTPWLSAEDYPKLLASADLGVSLHTSSSGL 328 (415)
T ss_pred HHHHHHHHHHHhhcccccCCCEEEEEEecCccHHHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHhCCEEEEcccccccc
Confidence 999999998752 468999999999999999999999887 56666 5677777 99999999997532 47
Q ss_pred cchhHHHHHHHcCCeEEecCCCc-ccccccCCCEEEeCCHHHHHHHHHHHHhC---CCC--CCcHHHH--hcCCHHHHHH
Q 016975 225 VVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYDDRNGFVEATLKALAE---EPA--LPTEAQR--HQLSWESATE 296 (379)
Q Consensus 225 ~~~~~~~EAma~G~PVI~t~~g~-~e~i~~~~~g~~~~~~~~l~~~i~~~l~~---~~~--~~~~~~~--~~~sw~~~~~ 296 (379)
++|++++||||||+|||+|+.|+ .|++.++.+|++++|+++++++|.+++++ +.. +|+.+++ ..++|+...+
T Consensus 329 ~~p~~~~Eama~G~PVI~s~~~~~~eiv~~~~~G~lv~d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~~~~~~~~~~ 408 (415)
T cd03816 329 DLPMKVVDMFGCGLPVCALDFKCIDELVKHGENGLVFGDSEELAEQLIDLLSNFPNRGKLNSLKKGAQEESELRWDENWD 408 (415)
T ss_pred CCcHHHHHHHHcCCCEEEeCCCCHHHHhcCCCCEEEECCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhcCHHHHHH
Confidence 89999999999999999999955 89999999999999999999999999998 443 5666544 5667776655
Q ss_pred HHH
Q 016975 297 RFL 299 (379)
Q Consensus 297 ~~~ 299 (379)
+..
T Consensus 409 ~~~ 411 (415)
T cd03816 409 RVV 411 (415)
T ss_pred HHh
Confidence 543
No 35
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.97 E-value=2.8e-29 Score=240.50 Aligned_cols=275 Identities=16% Similarity=0.130 Sum_probs=193.2
Q ss_pred ccccCCCC--CCcEEEEcCCcchhhhhcccccccccC-cEEEEeccChHHHHHHhhcchH-HHHHHHHHHHHHHHHhcce
Q 016975 21 ISEVIPDE--VADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRL-QAFLLKYANSWLVDIYCHK 96 (379)
Q Consensus 21 l~~~l~~~--~~DvV~~~~p~~~~~~~~~~~~~~~~~-~vv~~~h~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~ 96 (379)
+.+.+... +||+||++..... +. +..+.+... |+|.+.|+.............. .........+. ....+|.
T Consensus 91 ~~~~~~~~~~~~Div~~~~~~~~-~~--~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ad~ 166 (398)
T cd03800 91 LLRFLRREGGRPDLIHAHYWDSG-LV--ALLLARRLGIPLVHTFHSLGAVKRRHLGAADTYEPARRIEAEER-LLRAADR 166 (398)
T ss_pred HHHHHHhcCCCccEEEEecCccc-hH--HHHHHhhcCCceEEEeecccccCCcccccccccchhhhhhHHHH-HHhhCCE
Confidence 33444455 8999999864322 22 112333334 8888888754221110000000 00111111121 1223799
Q ss_pred EEEcChhhhhhhh-------ccceee-cccCCCCccCccccHH-HhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhH
Q 016975 97 VIRLSAATQEYAN-------SIICNV-HGVNPKFLEIGKKKKE-QQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQ 167 (379)
Q Consensus 97 vi~~S~~~~~~~~-------~~i~~i-~gvd~~~~~~~~~~~~-~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~ 167 (379)
++++|+...+... .++..+ ||+|.+.+.+...... .......++++.|+|+||+.+.||++.+++++..+.
T Consensus 167 ii~~s~~~~~~~~~~~~~~~~~~~vi~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gr~~~~k~~~~ll~a~~~l~ 246 (398)
T cd03800 167 VIASTPQEAEELYSLYGAYPRRIRVVPPGVDLERFTPYGRAEARRARLLRDPDKPRILAVGRLDPRKGIDTLIRAYAELP 246 (398)
T ss_pred EEEcCHHHHHHHHHHccccccccEEECCCCCccceecccchhhHHHhhccCCCCcEEEEEcccccccCHHHHHHHHHHHH
Confidence 9999977543322 124444 8999887765443222 222233445778999999999999999999999998
Q ss_pred hhcCCcEEEEEcCCcC------hHHHHHHHHhcCC--eeEEecCCCCHH--HHHhhcCEEEecCCCCcchhHHHHHHHcC
Q 016975 168 KELAGLEVDLYGNGED------FNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMG 237 (379)
Q Consensus 168 ~~~~~~~l~i~G~g~~------~~~l~~~~~~~~l--~v~~~g~~~~~~--~~~~~~dv~v~ps~~E~~~~~~~EAma~G 237 (379)
++.++++|+++|++.. ...++..++..++ ++.|+|.++..+ .+|+.||++++||..|++|++++|||+||
T Consensus 247 ~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G 326 (398)
T cd03800 247 ELRERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSREDLPALYRAADVFVNPALYEPFGLTALEAMACG 326 (398)
T ss_pred HhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCHHHHHHHHHhCCEEEecccccccCcHHHHHHhcC
Confidence 8788999999998765 2345666666654 688899998887 99999999999999999999999999999
Q ss_pred CeEEecCCCc-ccccccCCCEEEeC--CHHHHHHHHHHHHhCCCC--CCcHHH----HhcCCHHHHHHHHH
Q 016975 238 KIVVCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQ----RHQLSWESATERFL 299 (379)
Q Consensus 238 ~PVI~t~~g~-~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~~----~~~~sw~~~~~~~~ 299 (379)
+|||+++.++ .|++.++.+|++++ |+++++++|.++++++.. .++.++ .++|||+.++++++
T Consensus 327 ~Pvi~s~~~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~ 397 (398)
T cd03800 327 LPVVATAVGGPRDIVVDGVTGLLVDPRDPEALAAALRRLLTDPALRRRLSRAGLRRARARYTWERVAARLL 397 (398)
T ss_pred CCEEECCCCCHHHHccCCCCeEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 9999999955 88999989999987 899999999999988654 344432 27999999999886
No 36
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=99.97 E-value=5.2e-29 Score=244.72 Aligned_cols=208 Identities=19% Similarity=0.264 Sum_probs=163.3
Q ss_pred cceEEEcChhhhhhhh----------------ccceee-cccCCCCccCccccH-------------------HHhhcCC
Q 016975 94 CHKVIRLSAATQEYAN----------------SIICNV-HGVNPKFLEIGKKKK-------------------EQQQNGT 137 (379)
Q Consensus 94 ~d~vi~~S~~~~~~~~----------------~~i~~i-~gvd~~~~~~~~~~~-------------------~~~~~~~ 137 (379)
||.++++|...++... .++..| ||+|.+.|.+..... .+...+.
T Consensus 211 ad~v~~vS~~~~~~i~~~~~~~gl~~~~~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~k~~l~~~~g~ 290 (476)
T cd03791 211 ADAVTTVSPTYAREILTPEFGEGLDGLLRARAGKLSGILNGIDYDVWNPATDPHLPANYSADDLEGKAENKAALQEELGL 290 (476)
T ss_pred cCcCeecCHhHHHHhCCCCCCcchHHHHHhccCCeEEEeCCCcCcccCccccchhhhcCCccccccHHHHHHHHHHHcCC
Confidence 7999999976553321 244455 999998887643321 1112222
Q ss_pred --CCCcceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcC--hHHHHHHHHhcCCeeEEecCCCCHH--HHH
Q 016975 138 --HAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED--FNQIQEAAEKLKIVVRVYPGRDHAD--LIF 211 (379)
Q Consensus 138 --~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~l~v~~~g~~~~~~--~~~ 211 (379)
.++.+.|+|+||+.+.||++.+++++..+.+. +++|+++|+|+. .+.+++.+++...++.+++..++.. .+|
T Consensus 291 ~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~--~~~lvi~G~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 368 (476)
T cd03791 291 PVDPDAPLFGFVGRLTEQKGIDLLLEALPELLEL--GGQLVILGSGDPEYEEALRELAARYPGRVAVLIGYDEALAHLIY 368 (476)
T ss_pred CcCCCCCEEEEEeeccccccHHHHHHHHHHHHHc--CcEEEEEecCCHHHHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Confidence 35678999999999999999999999998765 499999999865 3566777766655788776666554 799
Q ss_pred hhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc-ccccccCC------CEEEeC--CHHHHHHHHHHHHhCCCC---
Q 016975 212 HDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQFP------NCRTYD--DRNGFVEATLKALAEEPA--- 279 (379)
Q Consensus 212 ~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-~e~i~~~~------~g~~~~--~~~~l~~~i~~~l~~~~~--- 279 (379)
+.||++++||.+|++|++++|||+||+|||+++.|+ .|++.++. +|++++ |+++++++|.++++....
T Consensus 369 ~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~~~~~~~~l~~~i~~~l~~~~~~~~ 448 (476)
T cd03791 369 AGADFFLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGEGTGFVFEGYNADALLAALRRALALYRDPEA 448 (476)
T ss_pred HhCCEEECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCCCCeEEeCCCCHHHHHHHHHHHHHHHcCHHH
Confidence 999999999999999999999999999999999955 89998887 999988 899999999998864322
Q ss_pred --CCcHHHH-hcCCHHHHHHHHHHHHh
Q 016975 280 --LPTEAQR-HQLSWESATERFLQVAE 303 (379)
Q Consensus 280 --~~~~~~~-~~~sw~~~~~~~~~~~~ 303 (379)
.++++.. ..|||+.++++|+++|+
T Consensus 449 ~~~~~~~~~~~~fsw~~~a~~~~~~y~ 475 (476)
T cd03791 449 WRKLQRNAMAQDFSWDRSAKEYLELYR 475 (476)
T ss_pred HHHHHHHHhccCCChHHHHHHHHHHHh
Confidence 3333332 67999999999999996
No 37
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.97 E-value=4.8e-29 Score=236.15 Aligned_cols=259 Identities=15% Similarity=0.138 Sum_probs=187.8
Q ss_pred cccccCCCCCCcEEEEcCCcchhhhhcccccccccC-cEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEE
Q 016975 20 DISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVI 98 (379)
Q Consensus 20 ~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~-~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 98 (379)
.+.+++++.+||+||++++....+...+ ......+ +++...|........ .. ... ...+|.++
T Consensus 75 ~l~~~l~~~~~Dii~~~~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~~~~~~--------~~----~~~---~~~~d~~i 138 (359)
T PRK09922 75 NFSKWLKETQPDIVICIDVISCLYANKA-RKKSGKQFKIFSWPHFSLDHKKH--------AE----CKK---ITCADYHL 138 (359)
T ss_pred HHHHHHHhcCCCEEEEcCHHHHHHHHHH-HHHhCCCCeEEEEecCcccccch--------hh----hhh---hhcCCEEE
Confidence 4667788899999999976543322111 1111112 455555653321110 00 011 13469999
Q ss_pred EcChhhhhhhh------ccceee-cccCCCCccCccccHHHhhcCCCCCcceEEEEEeccc--ccCHHHHHHHHHHhHhh
Q 016975 99 RLSAATQEYAN------SIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVW--SKGYKELLELLDDHQKE 169 (379)
Q Consensus 99 ~~S~~~~~~~~------~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~--~Kg~~~li~a~~~l~~~ 169 (379)
++|+.+++... .++..+ ||+|.+.+..... ...+++.++|+||+.+ .||++.+++++..+.
T Consensus 139 ~~S~~~~~~~~~~~~~~~ki~vi~N~id~~~~~~~~~--------~~~~~~~i~~~Grl~~~~~k~~~~l~~a~~~~~-- 208 (359)
T PRK09922 139 AISSGIKEQMMARGISAQRISVIYNPVEIKTIIIPPP--------ERDKPAVFLYVGRLKFEGQKNVKELFDGLSQTT-- 208 (359)
T ss_pred EcCHHHHHHHHHcCCCHHHEEEEcCCCCHHHccCCCc--------ccCCCcEEEEEEEEecccCcCHHHHHHHHHhhC--
Confidence 99988775543 233444 8998543321111 1123568999999974 599999999998873
Q ss_pred cCCcEEEEEcCCcChHHHHHHHHhcCC--eeEEecCCCCHH----HHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEec
Q 016975 170 LAGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHAD----LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCA 243 (379)
Q Consensus 170 ~~~~~l~i~G~g~~~~~l~~~~~~~~l--~v~~~g~~~~~~----~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t 243 (379)
++++|+|+|+|++.+++++.++++++ ++.|+|.+++.. ++|..+|++|+||..|+||++++||||||+|||+|
T Consensus 209 -~~~~l~ivG~g~~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~G~Pvv~s 287 (359)
T PRK09922 209 -GEWQLHIIGDGSDFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNVSALLLTSKFEGFPMTLLEAMSYGIPCISS 287 (359)
T ss_pred -CCeEEEEEeCCccHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhcCcEEEECCcccCcChHHHHHHHcCCCEEEe
Confidence 37999999999999999999988776 788999886643 77888999999999999999999999999999999
Q ss_pred C-CCc-ccccccCCCEEEeC--CHHHHHHHHHHHHhCCCCCCc---HHHHhcCCHHHHHHHHHHHHhcc
Q 016975 244 N-HPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPALPT---EAQRHQLSWESATERFLQVAELD 305 (379)
Q Consensus 244 ~-~g~-~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~~~~~---~~~~~~~sw~~~~~~~~~~~~~~ 305 (379)
+ .|+ .|++.++.+|++++ |+++++++|.++++++..... .+...+|+-+...+++.+.|...
T Consensus 288 ~~~~g~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (359)
T PRK09922 288 DCMSGPRDIIKPGLNGELYTPGNIDEFVGKLNKVISGEVKYQHDAIPNSIERFYEVLYFKNLNNALFSK 356 (359)
T ss_pred CCCCChHHHccCCCceEEECCCCHHHHHHHHHHHHhCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9 654 88999999998887 999999999999999874321 13347888899999999988753
No 38
>PLN00142 sucrose synthase
Probab=99.97 E-value=3.7e-29 Score=249.79 Aligned_cols=167 Identities=12% Similarity=0.145 Sum_probs=135.2
Q ss_pred CCCcceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCc------Ch------HHHHHHHHhcCC--eeEEecC
Q 016975 138 HAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGE------DF------NQIQEAAEKLKI--VVRVYPG 203 (379)
Q Consensus 138 ~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~------~~------~~l~~~~~~~~l--~v~~~g~ 203 (379)
.+++++|+++||+.+.||++.|++|+.++.+..++++|+|+|++. +. ..+.++++++++ ++.|.|.
T Consensus 570 ~~~kpvIl~VGRL~~~KGid~LIeA~a~l~~l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL~~~V~flG~ 649 (815)
T PLN00142 570 DRKKPIIFSMARLDRVKNLTGLVEWYGKNKRLRELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNLKGQFRWIAA 649 (815)
T ss_pred CCCCcEEEEEecCcccCCHHHHHHHHHHHHHhCCCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCCCCcEEEcCC
Confidence 445779999999999999999999999987766789999999872 11 336667778776 5777776
Q ss_pred CCC----HH--HHHh-hcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc-ccccccCCCEEEeC--CHHHHHHHHHHH
Q 016975 204 RDH----AD--LIFH-DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKA 273 (379)
Q Consensus 204 ~~~----~~--~~~~-~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-~e~i~~~~~g~~~~--~~~~l~~~i~~~ 273 (379)
..+ .+ .+++ .+|+||+||.+|+||++++||||||+|||+|+.|+ .|++.++.+|++++ |+++++++|.++
T Consensus 650 ~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVATdvGG~~EIV~dG~tG~LV~P~D~eaLA~aI~~l 729 (815)
T PLN00142 650 QTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCQGGPAEIIVDGVSGFHIDPYHGDEAANKIADF 729 (815)
T ss_pred cCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEEcCCCCHHHHhcCCCcEEEeCCCCHHHHHHHHHHH
Confidence 433 22 3334 46999999999999999999999999999999955 99999999999988 999999999876
Q ss_pred H----hCCCC--CCcHHHH----hcCCHHHHHHHHHHHHhc
Q 016975 274 L----AEEPA--LPTEAQR----HQLSWESATERFLQVAEL 304 (379)
Q Consensus 274 l----~~~~~--~~~~~~~----~~~sw~~~~~~~~~~~~~ 304 (379)
+ +++.. .++++++ ++|||+.++++++++...
T Consensus 730 LekLl~Dp~lr~~mg~~Ar~rv~e~FSWe~~A~rll~L~~~ 770 (815)
T PLN00142 730 FEKCKEDPSYWNKISDAGLQRIYECYTWKIYAERLLTLGGV 770 (815)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Confidence 5 44433 5555443 689999999999998753
No 39
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=99.97 E-value=7.3e-29 Score=234.24 Aligned_cols=251 Identities=15% Similarity=0.136 Sum_probs=180.1
Q ss_pred cccccCCCCCCcEEEEcCCcchhhhhcccccccccC-c-EEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceE
Q 016975 20 DISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-Y-VVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKV 97 (379)
Q Consensus 20 ~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~-~-vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 97 (379)
.+.+.+.+.+||+||++.+....... .+.+... + ++...|..+..... .. .......+... ....+|.+
T Consensus 71 ~~~~~~~~~~~Dvv~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~---~~--~~~~~~~~~~~-~~~~~~~~ 141 (358)
T cd03812 71 KLYKLIKKNKYDIVHVHGSSASGFIL---LAAKKAGVKVRIAHSHNTSDSHDK---KK--KILKYKVLRKL-INRLATDY 141 (358)
T ss_pred HHHHHHhcCCCCEEEEeCcchhHHHH---HHHhhCCCCeEEEEeccccccccc---cc--hhhHHHHHHHH-HHhcCCEE
Confidence 45556678899999998876332221 2222222 3 35556654322111 00 00111122222 12226899
Q ss_pred EEcChhhhhhhh-----ccceee-cccCCCCccCccccH-HHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhhc
Q 016975 98 IRLSAATQEYAN-----SIICNV-HGVNPKFLEIGKKKK-EQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKEL 170 (379)
Q Consensus 98 i~~S~~~~~~~~-----~~i~~i-~gvd~~~~~~~~~~~-~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~ 170 (379)
+++|+...+... .++..+ ||+|.+.+.+..... ........++++.|+|+||+.+.||++.+++++..+.++.
T Consensus 142 i~~s~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~ 221 (358)
T cd03812 142 LACSEEAGKWLFGKVKNKKFKVIPNGIDLEKFIFNEEIRKKRRELGILEDKFVIGHVGRFSEQKNHEFLIEIFAELLKKN 221 (358)
T ss_pred EEcCHHHHHHHHhCCCcccEEEEeccCcHHHcCCCchhhhHHHHcCCCCCCEEEEEEeccccccChHHHHHHHHHHHHhC
Confidence 999988665442 345555 899987765433221 1223334556789999999999999999999999999888
Q ss_pred CCcEEEEEcCCcChHHHHHHHHhcCC--eeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc-
Q 016975 171 AGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS- 247 (379)
Q Consensus 171 ~~~~l~i~G~g~~~~~l~~~~~~~~l--~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~- 247 (379)
++++++|+|+|+....+++.+++.++ ++.++|..++..++|+.||++|+||..|++|++++||||||+|||+|+.|+
T Consensus 222 ~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~~ 301 (358)
T cd03812 222 PNAKLLLVGDGELEEEIKKKVKELGLEDKVIFLGVRNDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGLPCILSDTITK 301 (358)
T ss_pred CCeEEEEEeCCchHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEecccccCCCHHHHHHHHhCCCEEEEcCCch
Confidence 99999999999998889888887765 678888865555999999999999999999999999999999999999965
Q ss_pred ccccccCCCEEEeC-CHHHHHHHHHHHHhCCCC
Q 016975 248 NDFFKQFPNCRTYD-DRNGFVEATLKALAEEPA 279 (379)
Q Consensus 248 ~e~i~~~~~g~~~~-~~~~l~~~i~~~l~~~~~ 279 (379)
.+++.++..++..+ ++++++++|.++++++..
T Consensus 302 ~~~i~~~~~~~~~~~~~~~~a~~i~~l~~~~~~ 334 (358)
T cd03812 302 EVDLTDLVKFLSLDESPEIWAEEILKLKSEDRR 334 (358)
T ss_pred hhhhccCccEEeCCCCHHHHHHHHHHHHhCcch
Confidence 78888844344444 679999999999999877
No 40
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.97 E-value=1.4e-28 Score=232.26 Aligned_cols=269 Identities=14% Similarity=0.157 Sum_probs=195.7
Q ss_pred cccccCCCCCCcEEEEcCCcchhhhhcccccccccCcEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEEE
Q 016975 20 DISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIR 99 (379)
Q Consensus 20 ~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 99 (379)
.+.+++.+.+||+||++.+....+.. ...+..+..+++...|+.... +....+..+.. ..+++.+++
T Consensus 70 ~~~~~~~~~~pdiv~~~~~~~~~~~~-l~~~~~~~~~~v~~~h~~~~~-------~~~~~~~~~~~-----~~~~~~~~~ 136 (360)
T cd04951 70 KLRKILRQFKPDVVHAHMFHANIFAR-LLRLFLPSPPLICTAHSKNEG-------GRLRMLAYRLT-----DFLSDLTTN 136 (360)
T ss_pred HHHHHHHhcCCCEEEEcccchHHHHH-HHHhhCCCCcEEEEeeccCch-------hHHHHHHHHHH-----hhccCceEE
Confidence 35566778899999998765332221 112222223788888865321 11111222222 223578888
Q ss_pred cChhhhhhhh-------ccceee-cccCCCCccCcccc--HHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhh
Q 016975 100 LSAATQEYAN-------SIICNV-HGVNPKFLEIGKKK--KEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKE 169 (379)
Q Consensus 100 ~S~~~~~~~~-------~~i~~i-~gvd~~~~~~~~~~--~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~ 169 (379)
+|....+... +++..+ ||+|...+.+.... .........++++.++|+|++.+.||++.+++++.++.++
T Consensus 137 ~s~~~~~~~~~~~~~~~~~~~~i~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~kg~~~li~a~~~l~~~ 216 (360)
T cd04951 137 VSKEALDYFIASKAFNANKSFVVYNGIDTDRFRKDPARRLKIRNALGVKNDTFVILAVGRLVEAKDYPNLLKAFAKLLSD 216 (360)
T ss_pred EcHHHHHHHHhccCCCcccEEEEccccchhhcCcchHHHHHHHHHcCcCCCCEEEEEEeeCchhcCcHHHHHHHHHHHhh
Confidence 8876554322 234444 89998776543321 1122233345577899999999999999999999999888
Q ss_pred cCCcEEEEEcCCcChHHHHHHHHhcCC--eeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc
Q 016975 170 LAGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS 247 (379)
Q Consensus 170 ~~~~~l~i~G~g~~~~~l~~~~~~~~l--~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~ 247 (379)
.++++|+|+|+|+..+++++.+++.+. ++.+.|..++..++|+.||++++||..|++|++++|||+||+|||+++.|+
T Consensus 217 ~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~PvI~~~~~~ 296 (360)
T cd04951 217 YLDIKLLIAGDGPLRATLERLIKALGLSNRVKLLGLRDDIAAYYNAADLFVLSSAWEGFGLVVAEAMACELPVVATDAGG 296 (360)
T ss_pred CCCeEEEEEcCCCcHHHHHHHHHhcCCCCcEEEecccccHHHHHHhhceEEecccccCCChHHHHHHHcCCCEEEecCCC
Confidence 889999999999999999988887765 678889877666999999999999999999999999999999999999966
Q ss_pred -ccccccCCCEEEeC--CHHHHHHHHHHHHhCCCC---CCcH---HHHhcCCHHHHHHHHHHHHh
Q 016975 248 -NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA---LPTE---AQRHQLSWESATERFLQVAE 303 (379)
Q Consensus 248 -~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~~---~~~~---~~~~~~sw~~~~~~~~~~~~ 303 (379)
.|++.+ +|++++ |+++++++|.+++++++. .++. ...+.|||+.+++++.++|+
T Consensus 297 ~~e~i~~--~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~y~ 359 (360)
T cd04951 297 VREVVGD--SGLIVPISDPEALANKIDEILKMSGEERDIIGARRERIVKKFSINSIVQQWLTLYT 359 (360)
T ss_pred hhhEecC--CceEeCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhh
Confidence 788877 566665 999999999999865443 2222 23489999999999999996
No 41
>PRK10125 putative glycosyl transferase; Provisional
Probab=99.96 E-value=5.4e-29 Score=238.11 Aligned_cols=269 Identities=10% Similarity=0.014 Sum_probs=174.7
Q ss_pred cccccC-CCCCCcEEEEcCCcch--hhh---hc--ccccccccCcEEEEeccChHHH-----------HHHhh-------
Q 016975 20 DISEVI-PDEVADIAVLEEPEHL--TWF---HH--GKRWKTKFRYVVGIVHTNYLEY-----------VKREK------- 73 (379)
Q Consensus 20 ~l~~~l-~~~~~DvV~~~~p~~~--~~~---~~--~~~~~~~~~~vv~~~h~~~~~~-----------~~~~~------- 73 (379)
.+.++| .+++|||||+|..... ... .. .........|+|.+.|+.++-. .+...
T Consensus 84 ~~~~~i~~~~~pDviHlH~~~~~~~~~~~l~~~~~~~~~~~~~~piV~TlHd~~~~tg~c~~~~~C~~~~~~c~~Cp~l~ 163 (405)
T PRK10125 84 ELYRTITRTPGPVVLHFHVLHSYWLNLKSVVRFCEKVKNHKPDVTLVWTLHDHWSVTGRCAFTDGCEGWKTGCQKCPTLN 163 (405)
T ss_pred HHHHHHhhccCCCEEEEecccCceecHHHHHHHHhhhhcccCCCCEEEecccccccCCCcCCCcccccccccCCCCCCcc
Confidence 445555 5889999999875432 111 00 0112333349999999877431 00000
Q ss_pred -cc----hHHHHHHHHHHHHHHHHh--cceEEEcChhhhhhhh-----ccceee-cccCCCCccCccccHHHhhcCCCCC
Q 016975 74 -NG----RLQAFLLKYANSWLVDIY--CHKVIRLSAATQEYAN-----SIICNV-HGVNPKFLEIGKKKKEQQQNGTHAF 140 (379)
Q Consensus 74 -~~----~~~~~~~~~~~~~~~~~~--~d~vi~~S~~~~~~~~-----~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~ 140 (379)
.+ ......+..-...+.... ++.+|++|+.+++... .++.++ ||+|++.+.+....... ...++
T Consensus 164 ~~~~~~~d~~~~~~~~k~~~~~~~~~~~~~iV~~S~~l~~~~~~~~~~~~i~vI~NGid~~~~~~~~~~~~~---~~~~~ 240 (405)
T PRK10125 164 NYPPVKVDRAHQLVAGKRQLFREMLALGCQFISPSQHVADAFNSLYGPGRCRIINNGIDMATEAILAELPPV---RETQG 240 (405)
T ss_pred CCCCCccchHHHHHHHHHHHHHHHhhcCcEEEEcCHHHHHHHHHHcCCCCEEEeCCCcCccccccccccccc---ccCCC
Confidence 00 011111111122222221 4789999988775433 345555 89996433221111000 01234
Q ss_pred cceEEEEEec--ccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHH---HHHhhcC
Q 016975 141 AKGAYYIGKM--VWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD---LIFHDYK 215 (379)
Q Consensus 141 ~~~il~vgrl--~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~---~~~~~~d 215 (379)
++.++++|+. .++||++.+++|+..+ .++++|+++|+|+... ..++.++|...+.+ ++|+.+|
T Consensus 241 ~~~il~v~~~~~~~~Kg~~~li~A~~~l---~~~~~L~ivG~g~~~~---------~~~v~~~g~~~~~~~l~~~y~~aD 308 (405)
T PRK10125 241 KPKIAVVAHDLRYDGKTDQQLVREMMAL---GDKIELHTFGKFSPFT---------AGNVVNHGFETDKRKLMSALNQMD 308 (405)
T ss_pred CCEEEEEEeccccCCccHHHHHHHHHhC---CCCeEEEEEcCCCccc---------ccceEEecCcCCHHHHHHHHHhCC
Confidence 6689999994 4789999999999886 3579999999876421 12567778765543 8999999
Q ss_pred EEEecCCCCcchhHHHHHHHcCCeEEecCCCc-ccccccCCCEEEeC--CHHHHHHHHHHHHhCCCC-----CCcHHHHh
Q 016975 216 VFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA-----LPTEAQRH 287 (379)
Q Consensus 216 v~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~~-----~~~~~~~~ 287 (379)
+||+||..|+||++++||||||+|||+|+.|+ .|++.+. +|++++ |+++|++.+...+.+... ...+...+
T Consensus 309 vfV~pS~~Egfp~vilEAmA~G~PVVat~~gG~~Eiv~~~-~G~lv~~~d~~~La~~~~~~~~~~~~~~~~~~~r~~~~~ 387 (405)
T PRK10125 309 ALVFSSRVDNYPLILCEALSIGVPVIATHSDAAREVLQKS-GGKTVSEEEVLQLAQLSKPEIAQAVFGTTLAEFSQRSRA 387 (405)
T ss_pred EEEECCccccCcCHHHHHHHcCCCEEEeCCCChHHhEeCC-cEEEECCCCHHHHHhccCHHHHHHhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999966 7777664 899998 999999865433332210 11112347
Q ss_pred cCCHHHHHHHHHHHHhc
Q 016975 288 QLSWESATERFLQVAEL 304 (379)
Q Consensus 288 ~~sw~~~~~~~~~~~~~ 304 (379)
.|||+.++++|+++|+.
T Consensus 388 ~fs~~~~~~~y~~lY~~ 404 (405)
T PRK10125 388 AYSGQQMLEEYVNFYQN 404 (405)
T ss_pred hCCHHHHHHHHHHHHHh
Confidence 89999999999999973
No 42
>PLN02949 transferase, transferring glycosyl groups
Probab=99.96 E-value=2.4e-28 Score=236.22 Aligned_cols=204 Identities=14% Similarity=0.091 Sum_probs=161.4
Q ss_pred cceEEEcChhhhhhhhc------cceee-cccCCCCccCccccHHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHh
Q 016975 94 CHKVIRLSAATQEYANS------IICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDH 166 (379)
Q Consensus 94 ~d~vi~~S~~~~~~~~~------~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l 166 (379)
+|.+++.|+.+++...+ ++.++ +|+|...+...... ..++++.++++||+.++||++.+|+|+..+
T Consensus 221 ad~ii~nS~~t~~~l~~~~~~~~~i~vvyp~vd~~~~~~~~~~-------~~~~~~~il~vGR~~~~Kg~~llI~A~~~l 293 (463)
T PLN02949 221 AHLAMVNSSWTKSHIEALWRIPERIKRVYPPCDTSGLQALPLE-------RSEDPPYIISVAQFRPEKAHALQLEAFALA 293 (463)
T ss_pred CCEEEECCHHHHHHHHHHcCCCCCeEEEcCCCCHHHcccCCcc-------ccCCCCEEEEEEeeeccCCHHHHHHHHHHH
Confidence 89999999998765432 23334 67775444211110 112346899999999999999999999987
Q ss_pred Hhh----cCCcEEEEEcCCcC------hHHHHHHHHhcCC--eeEEecCCCCHH--HHHhhcCEEEecCCCCcchhHHHH
Q 016975 167 QKE----LAGLEVDLYGNGED------FNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAE 232 (379)
Q Consensus 167 ~~~----~~~~~l~i~G~g~~------~~~l~~~~~~~~l--~v~~~g~~~~~~--~~~~~~dv~v~ps~~E~~~~~~~E 232 (379)
.++ .++++|+|+|+++. .++++++++++++ ++.|.|.+++++ ++|+.|+++++||..|+||++++|
T Consensus 294 ~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~~~V~f~g~v~~~el~~ll~~a~~~v~~s~~E~FGivvlE 373 (463)
T PLN02949 294 LEKLDADVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGLDGDVEFHKNVSYRDLVRLLGGAVAGLHSMIDEHFGISVVE 373 (463)
T ss_pred HHhccccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCCCcEEEeCCCCHHHHHHHHHhCcEEEeCCccCCCChHHHH
Confidence 653 46899999998742 2568888888876 588999998887 999999999999999999999999
Q ss_pred HHHcCCeEEecCCCc--cccccc---CCCEEEeCCHHHHHHHHHHHHhCCCC---CCcHHHH---hcCCHHHHHHHHHHH
Q 016975 233 ALAMGKIVVCANHPS--NDFFKQ---FPNCRTYDDRNGFVEATLKALAEEPA---LPTEAQR---HQLSWESATERFLQV 301 (379)
Q Consensus 233 Ama~G~PVI~t~~g~--~e~i~~---~~~g~~~~~~~~l~~~i~~~l~~~~~---~~~~~~~---~~~sw~~~~~~~~~~ 301 (379)
|||||+|||+++.|+ .|++.+ +.+|++++|+++++++|.+++++++. .|+++++ ++|||+.+++++.+.
T Consensus 374 AMA~G~PVIa~~~gGp~~eIV~~~~~g~tG~l~~~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~FS~e~~~~~~~~~ 453 (463)
T PLN02949 374 YMAAGAVPIAHNSAGPKMDIVLDEDGQQTGFLATTVEEYADAILEVLRMRETERLEIAAAARKRANRFSEQRFNEDFKDA 453 (463)
T ss_pred HHHcCCcEEEeCCCCCcceeeecCCCCcccccCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 999999999999955 366665 56899999999999999999986432 4544333 789999999999999
Q ss_pred Hhc
Q 016975 302 AEL 304 (379)
Q Consensus 302 ~~~ 304 (379)
++.
T Consensus 454 i~~ 456 (463)
T PLN02949 454 IRP 456 (463)
T ss_pred HHH
Confidence 884
No 43
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.96 E-value=1.3e-28 Score=232.41 Aligned_cols=271 Identities=18% Similarity=0.092 Sum_probs=191.9
Q ss_pred cccccCCCCCCcEEEEcCCcch-h-hh-hccccccccc-CcEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcc
Q 016975 20 DISEVIPDEVADIAVLEEPEHL-T-WF-HHGKRWKTKF-RYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCH 95 (379)
Q Consensus 20 ~l~~~l~~~~~DvV~~~~p~~~-~-~~-~~~~~~~~~~-~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 95 (379)
.+.+.+.+.+||+||++....+ . .. .......... .|+|..+|+...... .. .......... ..+|
T Consensus 67 ~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~-----~~---~~~~~~~~~~--~~~d 136 (366)
T cd03822 67 RAARAIRLSGPDVVVIQHEYGIFGGEAGLYLLLLLRGLGIPVVVTLHTVLLHEP-----RP---GDRALLRLLL--RRAD 136 (366)
T ss_pred HHHHHHhhcCCCEEEEeeccccccchhhHHHHHHHhhcCCCEEEEEecCCcccc-----ch---hhhHHHHHHH--hcCC
Confidence 4556677889999999762211 1 11 0011111123 399999998611111 00 1111112221 2269
Q ss_pred eEEEcC-hhhhhhhh----ccceee-cccCCCCccCccccHHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhh
Q 016975 96 KVIRLS-AATQEYAN----SIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKE 169 (379)
Q Consensus 96 ~vi~~S-~~~~~~~~----~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~ 169 (379)
.++++| +..+++.. .++..+ ||++...+...... .......+++.++|+|++.+.||++.+++++..+.++
T Consensus 137 ~ii~~s~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~~~~~ 213 (366)
T cd03822 137 AVIVMSSELLRALLLRAYPEKIAVIPHGVPDPPAEPPESL---KALGGLDGRPVLLTFGLLRPYKGLELLLEALPLLVAK 213 (366)
T ss_pred EEEEeeHHHHHHHHhhcCCCcEEEeCCCCcCcccCCchhh---HhhcCCCCCeEEEEEeeccCCCCHHHHHHHHHHHHhh
Confidence 999996 54555443 244444 89987666443221 1222334567899999999999999999999999988
Q ss_pred cCCcEEEEEcCCcChHHHHH-----HHHhcCC--eeEEecC-CCCHH--HHHhhcCEEEecCCCC--cchhHHHHHHHcC
Q 016975 170 LAGLEVDLYGNGEDFNQIQE-----AAEKLKI--VVRVYPG-RDHAD--LIFHDYKVFLNPSTTD--VVCTTTAEALAMG 237 (379)
Q Consensus 170 ~~~~~l~i~G~g~~~~~l~~-----~~~~~~l--~v~~~g~-~~~~~--~~~~~~dv~v~ps~~E--~~~~~~~EAma~G 237 (379)
.++++|+++|++........ +++++++ ++.++|+ ++..+ ++|+.||++++||..| ++|++++|||+||
T Consensus 214 ~~~~~l~i~G~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G 293 (366)
T cd03822 214 HPDVRLLVAGETHPDLERYRGEAYALAERLGLADRVIFINRYLPDEELPELFSAADVVVLPYRSADQTQSGVLAYAIGFG 293 (366)
T ss_pred CCCeEEEEeccCccchhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHHHHHhhcCEEEecccccccccchHHHHHHHcC
Confidence 89999999998776333221 2555554 7788887 77777 9999999999999999 9999999999999
Q ss_pred CeEEecCCCcccccccCCCEEEeC--CHHHHHHHHHHHHhCCCC--CCcHHHH---hcCCHHHHHHHHHHHHh
Q 016975 238 KIVVCANHPSNDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQR---HQLSWESATERFLQVAE 303 (379)
Q Consensus 238 ~PVI~t~~g~~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~~~---~~~sw~~~~~~~~~~~~ 303 (379)
+|||+++.|+.+.+.+..+|++++ |+++++++|.++++++.. .++++++ +.|||+.+++++.++|+
T Consensus 294 ~PvI~~~~~~~~~i~~~~~g~~~~~~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 366 (366)
T cd03822 294 KPVISTPVGHAEEVLDGGTGLLVPPGDPAALAEAIRRLLADPELAQALRARAREYARAMSWERVAERYLRLLA 366 (366)
T ss_pred CCEEecCCCChheeeeCCCcEEEcCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhC
Confidence 999999997788888888999887 899999999999997654 4544333 55999999999999874
No 44
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.96 E-value=2.3e-28 Score=230.53 Aligned_cols=271 Identities=17% Similarity=0.146 Sum_probs=190.8
Q ss_pred CCCCCcEEEEcCCcchhhhhccccccccc-CcEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEEEcChhh
Q 016975 26 PDEVADIAVLEEPEHLTWFHHGKRWKTKF-RYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIRLSAAT 104 (379)
Q Consensus 26 ~~~~~DvV~~~~p~~~~~~~~~~~~~~~~-~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~ 104 (379)
...++|+||++++....... ...+.++. .|++...|+....+.. ........+............++.+++.|...
T Consensus 84 ~~~~~dii~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~ 160 (375)
T cd03821 84 NIREADIVHVHGLWSYPSLA-AARAARKYGIPYVVSPHGMLDPWAL--PHKALKKRLAWFLFERRLLQAAAAVHATSEQE 160 (375)
T ss_pred hCCCCCEEEEecccchHHHH-HHHHHHHhCCCEEEEcccccccccc--ccchhhhHHHHHHHHHHHHhcCCEEEECCHHH
Confidence 35689999998754433221 11233233 3899999987554431 11112222222111111122268888888554
Q ss_pred hhhh-----hccceee-cccCCCCccCccccHHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEE
Q 016975 105 QEYA-----NSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLY 178 (379)
Q Consensus 105 ~~~~-----~~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~ 178 (379)
.... ..++..+ ||+|.+.+.+......+.......+++.++|+|++.+.||++.+++++..+.+++++++|+++
T Consensus 161 ~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~ 240 (375)
T cd03821 161 AAEIRRLGLKAPIAVIPNGVDIPPFAALPSRGRRRKFPILPDKRIILFLGRLHPKKGLDLLIEAFAKLAERFPDWHLVIA 240 (375)
T ss_pred HHHHHhhCCcccEEEcCCCcChhccCcchhhhhhhhccCCCCCcEEEEEeCcchhcCHHHHHHHHHHhhhhcCCeEEEEE
Confidence 4322 2234444 899987775543222122233445577999999999999999999999999988899999999
Q ss_pred cCCcC--hHHHHHHHHhcCC--eeEEecCCCCHH--HHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc-cccc
Q 016975 179 GNGED--FNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFF 251 (379)
Q Consensus 179 G~g~~--~~~l~~~~~~~~l--~v~~~g~~~~~~--~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-~e~i 251 (379)
|+++. ...++..+++.++ ++.++|.+++++ ++|+.||++|+||..|+||++++|||+||+|||+|+.|+ .+++
T Consensus 241 G~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~~~~ 320 (375)
T cd03821 241 GPDEGGYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTDKVPWQELI 320 (375)
T ss_pred CCCCcchHHHHHHHHHhcCccceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCCCCHHHHh
Confidence 97654 3445554455555 688889999777 999999999999999999999999999999999999955 7788
Q ss_pred ccCCCEEEeC-CHHHHHHHHHHHHhCCCC--CCcHHH----HhcCCHHHHHHHHHH
Q 016975 252 KQFPNCRTYD-DRNGFVEATLKALAEEPA--LPTEAQ----RHQLSWESATERFLQ 300 (379)
Q Consensus 252 ~~~~~g~~~~-~~~~l~~~i~~~l~~~~~--~~~~~~----~~~~sw~~~~~~~~~ 300 (379)
.+ .+|++++ +.++++++|.++++++.. .+++++ .++|+|+.+++++++
T Consensus 321 ~~-~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 375 (375)
T cd03821 321 EY-GCGWVVDDDVDALAAALRRALELPQRLKAMGENGRALVEERFSWTAIAQQLLE 375 (375)
T ss_pred hc-CceEEeCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHhhC
Confidence 77 7888888 779999999999998644 333322 489999999998763
No 45
>PLN02275 transferase, transferring glycosyl groups
Probab=99.96 E-value=1.9e-28 Score=232.80 Aligned_cols=244 Identities=12% Similarity=0.025 Sum_probs=170.0
Q ss_pred CCCCCCcEEEEcCCcchhhhhcccccccccC-cEEEEeccChHHHHH-HhhcchHHHHHHHHHHHHHHHHhcceEEEcCh
Q 016975 25 IPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVK-REKNGRLQAFLLKYANSWLVDIYCHKVIRLSA 102 (379)
Q Consensus 25 l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~-~vv~~~h~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~ 102 (379)
++..+||+||+++|..+.....+....+..+ |+|..+|+.+..... ..........+...+.+++. ..+|.+|++|+
T Consensus 96 ~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~ad~ii~~S~ 174 (371)
T PLN02275 96 VKIPRPDVFLVQNPPSVPTLAVVKLACWLRRAKFVIDWHNFGYTLLALSLGRSHPLVRLYRWYERHYG-KMADGHLCVTK 174 (371)
T ss_pred hhCCCCCEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEcCCccHHHHhcccCCCCHHHHHHHHHHHHHH-hhCCEEEECCH
Confidence 3467999999988664332111112222223 888899986422111 00111112223333444422 22799999998
Q ss_pred hhhhhhhc--c--ceee-cccCCCCccCccccHHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhH----------
Q 016975 103 ATQEYANS--I--ICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQ---------- 167 (379)
Q Consensus 103 ~~~~~~~~--~--i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~---------- 167 (379)
.+++...+ + +.++ || +.+.|.+...... ...+....++++||+.+.||++.+++|+..+.
T Consensus 175 ~~~~~l~~~~g~~i~vi~n~-~~~~f~~~~~~~~----~~~~~~~~i~~~grl~~~k~~~~li~a~~~l~~~~~~~~~~~ 249 (371)
T PLN02275 175 AMQHELDQNWGIRATVLYDQ-PPEFFRPASLEIR----LRPNRPALVVSSTSWTPDEDFGILLEAAVMYDRRVAARLNES 249 (371)
T ss_pred HHHHHHHHhcCCCeEEECCC-CHHHcCcCCchhc----ccCCCcEEEEEeCceeccCCHHHHHHHHHHHHhhhhhccccc
Confidence 87765432 2 3344 55 4444544322110 11223457889999999999999999998874
Q ss_pred -------hhcCCcEEEEEcCCcChHHHHHHHHhcCC-eeEEec-CCCCHH--HHHhhcCEEEecCC---CCcchhHHHHH
Q 016975 168 -------KELAGLEVDLYGNGEDFNQIQEAAEKLKI-VVRVYP-GRDHAD--LIFHDYKVFLNPST---TDVVCTTTAEA 233 (379)
Q Consensus 168 -------~~~~~~~l~i~G~g~~~~~l~~~~~~~~l-~v~~~g-~~~~~~--~~~~~~dv~v~ps~---~E~~~~~~~EA 233 (379)
+..|+++|+|+|+|+..+++++.++++++ ++.|++ .++.++ ++|+.||++|.|+. .|++|++++||
T Consensus 250 ~~~~~~~~~~~~i~l~ivG~G~~~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEA 329 (371)
T PLN02275 250 DSASGKQSLYPRLLFIITGKGPQKAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDM 329 (371)
T ss_pred cccccccccCCCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHH
Confidence 23578999999999999999999999887 567766 477776 99999999998632 38899999999
Q ss_pred HHcCCeEEecCCCc-ccccccCCCEEEeCCHHHHHHHHHHHH
Q 016975 234 LAMGKIVVCANHPS-NDFFKQFPNCRTYDDRNGFVEATLKAL 274 (379)
Q Consensus 234 ma~G~PVI~t~~g~-~e~i~~~~~g~~~~~~~~l~~~i~~~l 274 (379)
||||+|||+|+.|+ .|++.++.+|++++|+++++++|.+++
T Consensus 330 mA~G~PVVa~~~gg~~eiv~~g~~G~lv~~~~~la~~i~~l~ 371 (371)
T PLN02275 330 FGCGLPVCAVSYSCIGELVKDGKNGLLFSSSSELADQLLELL 371 (371)
T ss_pred HHCCCCEEEecCCChHHHccCCCCeEEECCHHHHHHHHHHhC
Confidence 99999999999955 899999999999999999999998864
No 46
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=99.96 E-value=1.4e-28 Score=231.26 Aligned_cols=275 Identities=17% Similarity=0.117 Sum_probs=198.0
Q ss_pred ccccccCCCCCCcEEEEcCCcchhhhhcccccccccCcEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEE
Q 016975 19 GDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVI 98 (379)
Q Consensus 19 ~~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 98 (379)
..+.+++.+.+||+||++......+.... .+.....+++...|....... . ........+..++. ..+|.++
T Consensus 70 ~~~~~~~~~~~~div~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~-----~-~~~~~~~~~~~~~~-~~~~~~i 141 (365)
T cd03807 70 LRLYKLIRRLRPDVVHTWMYHADLYGGLA-ARLAGVPPVIWGIRHSDLDLG-----K-KSTRLVARLRRLLS-SFIPLIV 141 (365)
T ss_pred HHHHHHHHhhCCCEEEeccccccHHHHHH-HHhcCCCcEEEEecCCccccc-----c-hhHhHHHHHHHHhc-cccCeEE
Confidence 35667777889999999765433222111 111123488888888664421 0 01122222222211 1258889
Q ss_pred EcChhhhhhhhc------cceee-cccCCCCccCccccHH--HhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhh
Q 016975 99 RLSAATQEYANS------IICNV-HGVNPKFLEIGKKKKE--QQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKE 169 (379)
Q Consensus 99 ~~S~~~~~~~~~------~i~~i-~gvd~~~~~~~~~~~~--~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~ 169 (379)
++|....+.... ++..+ ||+|...+.+...... +.+.+..++++.++|+|++.+.||++.+++++..+.++
T Consensus 142 ~~s~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~ 221 (365)
T cd03807 142 ANSAAAAEYHQAIGYPPKKIVVIPNGVDTERFSPDLDARARLREELGLPEDTFLIGIVARLHPQKDHATLLRAAALLLKK 221 (365)
T ss_pred eccHHHHHHHHHcCCChhheeEeCCCcCHHhcCCcccchHHHHHhcCCCCCCeEEEEecccchhcCHHHHHHHHHHHHHh
Confidence 999876654432 33344 8999776654433221 12333345577899999999999999999999999888
Q ss_pred cCCcEEEEEcCCcChHHHHHHHH-hcCC--eeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCC
Q 016975 170 LAGLEVDLYGNGEDFNQIQEAAE-KLKI--VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHP 246 (379)
Q Consensus 170 ~~~~~l~i~G~g~~~~~l~~~~~-~~~l--~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g 246 (379)
.++++|+++|.++....++.... +.++ ++.+.|..++..++|+.||++++||..|++|++++|||+||+|||+++.|
T Consensus 222 ~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~~ 301 (365)
T cd03807 222 FPNARLLLVGDGPDRANLELLALKELGLEDKVILLGERSDVPALLNALDVFVLSSLSEGFPNVLLEAMACGLPVVATDVG 301 (365)
T ss_pred CCCeEEEEecCCcchhHHHHHHHHhcCCCceEEEccccccHHHHHHhCCEEEeCCccccCCcHHHHHHhcCCCEEEcCCC
Confidence 88999999999988777776665 5555 67777877666699999999999999999999999999999999999996
Q ss_pred c-ccccccCCCEEEeC--CHHHHHHHHHHHHhCCCC--CCcHH----HHhcCCHHHHHHHHHHHHh
Q 016975 247 S-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEA----QRHQLSWESATERFLQVAE 303 (379)
Q Consensus 247 ~-~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~----~~~~~sw~~~~~~~~~~~~ 303 (379)
+ .|++.+ +|++++ |+++++++|.+++++++. .++.+ .+++|||+.+++++.++|+
T Consensus 302 ~~~e~~~~--~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~y~ 365 (365)
T cd03807 302 DNAELVGD--TGFLVPPGDPEALAEAIEALLADPALRQALGEAARERIEENFSIEAMVEAYEELYR 365 (365)
T ss_pred ChHHHhhc--CCEEeCCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 6 777777 787776 999999999999998754 33332 3378999999999999985
No 47
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.96 E-value=5.8e-28 Score=227.96 Aligned_cols=274 Identities=21% Similarity=0.259 Sum_probs=199.1
Q ss_pred ccCCCCCCcEEEEcCCcchhhhhcccccccccC-cEEEEeccChHHHHHHhhcchH--HHHHH-HHHHHHHHHHhcceEE
Q 016975 23 EVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRL--QAFLL-KYANSWLVDIYCHKVI 98 (379)
Q Consensus 23 ~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~-~vv~~~h~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~d~vi 98 (379)
..+.+.+||+||++.+...... +..+.++.+ |++..+|+.+..+......... ..... ....... ..+|.++
T Consensus 78 ~~~~~~~~Div~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~i~ 153 (374)
T cd03817 78 IILKELGPDIVHTHTPFSLGLL--GLRVARKLGIPVVATYHTMYEDYTHYVPLGRLLARAVVRRKLSRRFY--NRCDAVI 153 (374)
T ss_pred HHHhhcCCCEEEECCchhhhhH--HHHHHHHcCCCEEEEecCCHHHHHHHHhcccchhHHHHHHHHHHHHh--hhCCEEE
Confidence 4466789999999988554433 233444444 9999999987766533222111 11111 1111211 1269999
Q ss_pred EcChhhhhhhhc-----cceee-cccCCCCccCccccHHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhhcCC
Q 016975 99 RLSAATQEYANS-----IICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAG 172 (379)
Q Consensus 99 ~~S~~~~~~~~~-----~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~ 172 (379)
++|+..++.... ++..+ +|+|...+.+..............+++.++|+|++.+.||++.+++++..+.++.++
T Consensus 154 ~~s~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~ 233 (374)
T cd03817 154 APSEKIADLLREYGVKRPIEVIPTGIDLDRFEPVDGDDERRKLGIPEDEPVLLYVGRLAKEKNIDFLIRAFARLLKEEPD 233 (374)
T ss_pred eccHHHHHHHHhcCCCCceEEcCCccchhccCccchhHHHHhcCCCCCCeEEEEEeeeecccCHHHHHHHHHHHHHhCCC
Confidence 999886655432 22333 799987776544332222223344567899999999999999999999999887789
Q ss_pred cEEEEEcCCcChHHHHHHHHhcCC--eeEEecCCCCHH--HHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc-
Q 016975 173 LEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS- 247 (379)
Q Consensus 173 ~~l~i~G~g~~~~~l~~~~~~~~l--~v~~~g~~~~~~--~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~- 247 (379)
++++++|+|+..+.+++.+++.++ ++.++|.+++.+ .+|+.||++++||..|++|++++|||+||+|||+++.|+
T Consensus 234 ~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~~~~ 313 (374)
T cd03817 234 VKLVIVGDGPEREELEELARELGLADRVIFTGFVPREELPDYYKAADLFVFASTTETQGLVLLEAMAAGLPVVAVDAPGL 313 (374)
T ss_pred eEEEEEeCCchHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcCEEEecccccCcChHHHHHHHcCCcEEEeCCCCh
Confidence 999999999998888888876665 688889998877 999999999999999999999999999999999999966
Q ss_pred ccccccCCCEEEeC-CHHHHHHHHHHHHhCCCC--CCcHHHH---hcCCHHHHHHHHHHHHh
Q 016975 248 NDFFKQFPNCRTYD-DRNGFVEATLKALAEEPA--LPTEAQR---HQLSWESATERFLQVAE 303 (379)
Q Consensus 248 ~e~i~~~~~g~~~~-~~~~l~~~i~~~l~~~~~--~~~~~~~---~~~sw~~~~~~~~~~~~ 303 (379)
.+++.++.+|++++ +..+++++|.++++++.. .++++.+ ++++ ..+++.++|+
T Consensus 314 ~~~i~~~~~g~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 372 (374)
T cd03817 314 PDLVADGENGFLFPPGDEALAEALLRLLQDPELRRRLSKNAEESAEKFS---FAKKVEKLYE 372 (374)
T ss_pred hhheecCceeEEeCCCCHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH---HHHHHHHHHh
Confidence 88999989999998 333999999999998765 4444433 2333 4455555554
No 48
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.96 E-value=3.1e-28 Score=228.46 Aligned_cols=277 Identities=20% Similarity=0.181 Sum_probs=206.3
Q ss_pred cccccCCCCCCcEEEEcCCcchhhhhccccccccc-CcEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEE
Q 016975 20 DISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKF-RYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVI 98 (379)
Q Consensus 20 ~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~-~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 98 (379)
.+.+.+.+.+||+||++.+....... ...... .|++..+|+.+....... .............. ....+|.++
T Consensus 76 ~~~~~~~~~~~Dii~~~~~~~~~~~~---~~~~~~~~~~i~~~h~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~d~~i 149 (374)
T cd03801 76 RLRRLLRRERFDVVHAHDWLALLAAA---LAARLLGIPLVLTVHGLEFGRPGNE--LGLLLKLARALERR-ALRRADRII 149 (374)
T ss_pred HHHHHhhhcCCcEEEEechhHHHHHH---HHHHhcCCcEEEEeccchhhccccc--hhHHHHHHHHHHHH-HHHhCCEEE
Confidence 45667778899999999877665542 122222 399999998776543211 01111111112221 112269999
Q ss_pred EcChhhhhhhhc-------cceee-cccCCCCccCccccHHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhhc
Q 016975 99 RLSAATQEYANS-------IICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKEL 170 (379)
Q Consensus 99 ~~S~~~~~~~~~-------~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~ 170 (379)
++|+...+...+ ++..+ +|++...+.+.. ...........+++.++|+|++.+.||++.+++++..+.+..
T Consensus 150 ~~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~ 228 (374)
T cd03801 150 AVSEATREELRELGGVPPEKITVIPNGVDTERFRPAP-RAARRRLGIPEDEPVILFVGRLVPRKGVDLLLEALAKLRKEY 228 (374)
T ss_pred EecHHHHHHHHhcCCCCCCcEEEecCcccccccCccc-hHHHhhcCCcCCCeEEEEecchhhhcCHHHHHHHHHHHhhhc
Confidence 999887655432 33333 799887775443 111222333445678999999999999999999999998888
Q ss_pred CCcEEEEEcCCcChHHHHHHHHhcCC--eeEEecCCCCHH--HHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCC
Q 016975 171 AGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHP 246 (379)
Q Consensus 171 ~~~~l~i~G~g~~~~~l~~~~~~~~l--~v~~~g~~~~~~--~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g 246 (379)
++++|+++|+++....+++.+++.+. ++.+.|.+++.+ ++|+.||++++|+..|++|++++|||+||+|||+++.+
T Consensus 229 ~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~~ 308 (374)
T cd03801 229 PDVRLVIVGDGPLREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGLPVVASDVG 308 (374)
T ss_pred CCeEEEEEeCcHHHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCEEEecchhccccchHHHHHHcCCcEEEeCCC
Confidence 89999999999888888887766554 788889997777 99999999999999999999999999999999999985
Q ss_pred c-ccccccCCCEEEeC--CHHHHHHHHHHHHhCCCC--CCcHH----HHhcCCHHHHHHHHHHHHh
Q 016975 247 S-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEA----QRHQLSWESATERFLQVAE 303 (379)
Q Consensus 247 ~-~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~----~~~~~sw~~~~~~~~~~~~ 303 (379)
+ .+.+.++.+|++++ |+++++++|.++++++.. .++.+ ..+.|+|+.+++++.++|+
T Consensus 309 ~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (374)
T cd03801 309 GIPEVVEDGETGLLVPPGDPEALAEAILRLLDDPELRRRLGEAARERVAERFSWDRVAARTEEVYY 374 (374)
T ss_pred ChhHHhcCCcceEEeCCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhC
Confidence 5 88888888999988 689999999999988765 34333 3489999999999999874
No 49
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.96 E-value=2e-28 Score=230.96 Aligned_cols=256 Identities=18% Similarity=0.173 Sum_probs=185.7
Q ss_pred CCCCCCcEEEEcCCcchhhhhcccccccccCcEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEEEcChhh
Q 016975 25 IPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIRLSAAT 104 (379)
Q Consensus 25 l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~ 104 (379)
+...+||+||++.+....... ..+.....+++..+|+...... ... .+.+.+.++. ...||.++++|+..
T Consensus 79 ~~~~~~Dii~~~~~~~~~~~~--~~~~~~~~~~i~~~h~~~~~~~------~~~-~~~~~~~~~~-~~~~d~vi~~s~~~ 148 (357)
T cd03795 79 KLAKKADVIHLHFPNPLADLA--LLLLPRKKPVVVHWHSDIVKQK------LLL-KLYRPLQRRF-LRRADAIVATSPNY 148 (357)
T ss_pred hcCCCCCEEEEecCcchHHHH--HHHhccCceEEEEEcChhhccc------hhh-hhhhHHHHHH-HHhcCEEEeCcHHH
Confidence 446789999998876544331 1222223488888987543211 011 1112222221 11269999999876
Q ss_pred hhhhh------ccceee-cccCCCCccCccccHHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEE
Q 016975 105 QEYAN------SIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDL 177 (379)
Q Consensus 105 ~~~~~------~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i 177 (379)
.+... .++..+ ||+|...+.+...... .......+++.++|+|++.+.||++.+++++.++. +++|+|
T Consensus 149 ~~~~~~~~~~~~~~~~i~~gi~~~~~~~~~~~~~-~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~----~~~l~i 223 (357)
T cd03795 149 AETSPVLRRFRDKVRVIPLGLDPARYPRPDALEE-AIWRRAAGRPFFLFVGRLVYYKGLDVLLEAAAALP----DAPLVI 223 (357)
T ss_pred HHHHHHhcCCccceEEecCCCChhhcCCcchhhh-HhhcCCCCCcEEEEecccccccCHHHHHHHHHhcc----CcEEEE
Confidence 65322 233333 8999887765433211 11223345678999999999999999999999875 799999
Q ss_pred EcCCcChHHHHHHHHhcCC--eeEEecCCCCHH--HHHhhcCEEEecCC--CCcchhHHHHHHHcCCeEEecCCCc-ccc
Q 016975 178 YGNGEDFNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPST--TDVVCTTTAEALAMGKIVVCANHPS-NDF 250 (379)
Q Consensus 178 ~G~g~~~~~l~~~~~~~~l--~v~~~g~~~~~~--~~~~~~dv~v~ps~--~E~~~~~~~EAma~G~PVI~t~~g~-~e~ 250 (379)
+|+|+....+++.+++.+. ++.|+|.+++.+ ++|+.||++++||. .|++|++++|||+||+|||+|+.|+ .+.
T Consensus 224 ~G~g~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~ 303 (357)
T cd03795 224 VGEGPLEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSY 303 (357)
T ss_pred EeCChhHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhH
Confidence 9999998888888866655 788999999877 99999999999996 5999999999999999999999955 777
Q ss_pred ccc-CCCEEEeC--CHHHHHHHHHHHHhCCCC--CCcHHHH----hcCCHHHHH
Q 016975 251 FKQ-FPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQR----HQLSWESAT 295 (379)
Q Consensus 251 i~~-~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~~~----~~~sw~~~~ 295 (379)
+.+ +.+|++++ |+++++++|.++++++.. .++++++ ++|||+.++
T Consensus 304 i~~~~~~g~~~~~~d~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 357 (357)
T cd03795 304 VNLHGVTGLVVPPGDPAALAEAIRRLLEDPELRERLGEAARERAEEEFTADRMV 357 (357)
T ss_pred HhhCCCceEEeCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHhcchHhhC
Confidence 775 88998887 899999999999998765 4444333 789998763
No 50
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.96 E-value=2.6e-28 Score=234.51 Aligned_cols=254 Identities=15% Similarity=0.087 Sum_probs=185.3
Q ss_pred CCCCcEEEEcCCcchhhhhcccccccccC--cEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEEEcChhh
Q 016975 27 DEVADIAVLEEPEHLTWFHHGKRWKTKFR--YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIRLSAAT 104 (379)
Q Consensus 27 ~~~~DvV~~~~p~~~~~~~~~~~~~~~~~--~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~ 104 (379)
+.++|++|.......... +..+.++.. ++|...|+.+..... ... .. ..+.+.+ ...+|.++++|+..
T Consensus 125 ~~~~~v~~sy~~~~~~~~--~~~l~~~~~~~~~i~~~Hg~d~~~~~-~~~-~~-----~~~~~~~-~~~~d~ii~~S~~~ 194 (407)
T cd04946 125 DGQGTVFYSYWLHETAYA--LALLKKEYLRKRVISRAHGYDLYEDR-YPS-GY-----IPLRRYL-LSSLDAVFPCSEQG 194 (407)
T ss_pred ccCceEEEEecCchHHHH--HHHHHHhcCCceEEEEeccchhhhhh-ccc-cc-----hHHHHHH-HhcCCEEEECCHHH
Confidence 456788887543333322 113333333 489999986542211 111 00 1111111 12259999999887
Q ss_pred hhhhhc-------cceee-cccCCCCccCccccHHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhhcC--CcE
Q 016975 105 QEYANS-------IICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELA--GLE 174 (379)
Q Consensus 105 ~~~~~~-------~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~--~~~ 174 (379)
.++..+ ++.++ +|++...+.+.. ...+++.++++|++.+.||++.+++++..+.+..| ++.
T Consensus 195 ~~~l~~~~~~~~~ki~vi~~gv~~~~~~~~~---------~~~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~ 265 (407)
T cd04946 195 RNYLQKRYPAYKEKIKVSYLGVSDPGIISKP---------SKDDTLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIK 265 (407)
T ss_pred HHHHHHHCCCccccEEEEECCcccccccCCC---------CCCCCEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEE
Confidence 655432 23334 788876554321 12335689999999999999999999999988776 567
Q ss_pred EEEEcCCcChHHHHHHHHhcCC--eeEEecCCCCHH--HHHhh--cCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc-
Q 016975 175 VDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHD--YKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS- 247 (379)
Q Consensus 175 l~i~G~g~~~~~l~~~~~~~~l--~v~~~g~~~~~~--~~~~~--~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~- 247 (379)
++++|+|++.+.+++++++.+. ++.|.|.+++.+ .+|+. +|+|++||..||+|++++||||||+|||+|++|+
T Consensus 266 ~~iiG~g~~~~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg~ 345 (407)
T cd04946 266 WTHIGGGPLEDTLKELAESKPENISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGGT 345 (407)
T ss_pred EEEEeCchHHHHHHHHHHhcCCCceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCCCc
Confidence 7889999999999998876554 678889999888 88875 6899999999999999999999999999999965
Q ss_pred ccccccCCCEEEeC---CHHHHHHHHHHHHhCCCC--CCcHHHH----hcCCHHHHHHHHH
Q 016975 248 NDFFKQFPNCRTYD---DRNGFVEATLKALAEEPA--LPTEAQR----HQLSWESATERFL 299 (379)
Q Consensus 248 ~e~i~~~~~g~~~~---~~~~l~~~i~~~l~~~~~--~~~~~~~----~~~sw~~~~~~~~ 299 (379)
.|++.++.+|++++ |+++++++|.++++++.. .|+++++ ++|+|+...+++.
T Consensus 346 ~e~i~~~~~G~l~~~~~~~~~la~~I~~ll~~~~~~~~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 346 PEIVDNGGNGLLLSKDPTPNELVSSLSKFIDNEEEYQTMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred HHHhcCCCcEEEeCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHhHHHhc
Confidence 89999998998875 789999999999987655 5666554 7999999988875
No 51
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.96 E-value=1.5e-28 Score=233.93 Aligned_cols=258 Identities=18% Similarity=0.195 Sum_probs=187.9
Q ss_pred CCCCcEEEEcCCcchhhhhcccccccccCcEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEEEcChhhhh
Q 016975 27 DEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIRLSAATQE 106 (379)
Q Consensus 27 ~~~~DvV~~~~p~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~ 106 (379)
..++|+++++.+....+.. .... ...+.+.++|+.............++... +.......+ +|.+|++|+..++
T Consensus 97 ~~~~diii~~~~~~~~~~~--~~~~-~~~~~i~~~h~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~d~ii~~s~~~~~ 170 (372)
T cd04949 97 DTKPDVFILDRPTLDGQAL--LNMK-KAAKVVVVLHSNHVSDNNDPVHSLINNFY-EYVFENLDK--VDGVIVATEQQKQ 170 (372)
T ss_pred CCCCCEEEECCccccchhH--Hhcc-CCceEEEEEChHHhCCcccccccccchhh-HHHHhChhh--CCEEEEccHHHHH
Confidence 4789999998877665521 1122 11267888887543222100011111111 111111122 4999999977654
Q ss_pred hhhc------cceee-cccCCCCccCccccHHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEc
Q 016975 107 YANS------IICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYG 179 (379)
Q Consensus 107 ~~~~------~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G 179 (379)
.... ++..+ +|++...+.+... ....+..++++||+.++||++.+++++..+.++.|+++|+|+|
T Consensus 171 ~l~~~~~~~~~v~~ip~g~~~~~~~~~~~--------~~~~~~~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l~i~G 242 (372)
T cd04949 171 DLQKQFGNYNPIYTIPVGSIDPLKLPAQF--------KQRKPHKIITVARLAPEKQLDQLIKAFAKVVKQVPDATLDIYG 242 (372)
T ss_pred HHHHHhCCCCceEEEcccccChhhcccch--------hhcCCCeEEEEEccCcccCHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 3321 23344 7888766544320 1122457999999999999999999999999989999999999
Q ss_pred CCcChHHHHHHHHhcCC--eeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCC--cccccccCC
Q 016975 180 NGEDFNQIQEAAEKLKI--VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHP--SNDFFKQFP 255 (379)
Q Consensus 180 ~g~~~~~l~~~~~~~~l--~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g--~~e~i~~~~ 255 (379)
.|+....++...++.++ ++.+.|..++..++|+.||++|+||..|+||++++|||+||+|||+++.+ ..+++.++.
T Consensus 243 ~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~g~~~~v~~~~ 322 (372)
T cd04949 243 YGDEEEKLKELIEELGLEDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNYGPSEIIEDGE 322 (372)
T ss_pred eCchHHHHHHHHHHcCCcceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCCCcHHHcccCC
Confidence 99998888888777765 67778876666699999999999999999999999999999999999984 488999999
Q ss_pred CEEEeC--CHHHHHHHHHHHHhCCCC--CCcHHH---HhcCCHHHHHHHH
Q 016975 256 NCRTYD--DRNGFVEATLKALAEEPA--LPTEAQ---RHQLSWESATERF 298 (379)
Q Consensus 256 ~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~~---~~~~sw~~~~~~~ 298 (379)
+|++++ |+++++++|..+++++.. .++..+ .++|||+.+++++
T Consensus 323 ~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~w 372 (372)
T cd04949 323 NGYLVPKGDIEALAEAIIELLNDPKLLQKFSEAAYENAERYSEENVWEKW 372 (372)
T ss_pred CceEeCCCcHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhHHHHHhcC
Confidence 999999 999999999999998754 444433 3789999988763
No 52
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.96 E-value=6.3e-28 Score=227.08 Aligned_cols=274 Identities=19% Similarity=0.226 Sum_probs=206.5
Q ss_pred cccccCC--CCCCcEEEEcCCcchhhhhcccccccccC-cEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcce
Q 016975 20 DISEVIP--DEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHK 96 (379)
Q Consensus 20 ~l~~~l~--~~~~DvV~~~~p~~~~~~~~~~~~~~~~~-~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 96 (379)
.+.+.+. ..+||+||++.+....+. .....+..+ |++..+|+.+...... .. ........... .+|.
T Consensus 82 ~~~~~l~~~~~~~dii~~~~~~~~~~~--~~~~~~~~~~~~i~~~h~~~~~~~~~--~~----~~~~~~~~~~~--~~d~ 151 (377)
T cd03798 82 ALLKLLKLKRFRPDLIHAHFAYPDGFA--AALLKRKLGIPLVVTLHGSDVNLLPR--KR----LLRALLRRALR--RADA 151 (377)
T ss_pred HHHHHHhcccCCCCEEEEeccchHHHH--HHHHHHhcCCCEEEEeecchhcccCc--hh----hHHHHHHHHHh--cCCe
Confidence 4666776 889999999865544433 122333333 8999999876544321 10 11122222221 2599
Q ss_pred EEEcChhhhhhhhc------cceee-cccCCCCccCccccHHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhh
Q 016975 97 VIRLSAATQEYANS------IICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKE 169 (379)
Q Consensus 97 vi~~S~~~~~~~~~------~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~ 169 (379)
++++|+..++...+ ++..+ +|+|...+.+...... .......+++.++++|++.+.||++.+++++..+.++
T Consensus 152 ii~~s~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~ 230 (377)
T cd03798 152 VIAVSEALADELKALGIDPEKVTVIPNGVDTERFSPADRAEA-RKLGLPEDKKVILFVGRLVPRKGIDYLIEALARLLKK 230 (377)
T ss_pred EEeCCHHHHHHHHHhcCCCCceEEcCCCcCcccCCCcchHHH-HhccCCCCceEEEEeccCccccCHHHHHHHHHHHHhc
Confidence 99999887755432 33344 7999887765433221 1122334567899999999999999999999999887
Q ss_pred cCCcEEEEEcCCcChHHHHHHHHhcCC--eeEEecCCCCHH--HHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 170 LAGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 170 ~~~~~l~i~G~g~~~~~l~~~~~~~~l--~v~~~g~~~~~~--~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
.++++++++|++++...+++.+++.+. ++.+.|.+++.+ ++|+.||++++||..|++|++++|||+||+|||+++.
T Consensus 231 ~~~~~l~i~g~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~ 310 (377)
T cd03798 231 RPDVHLVIVGDGPLREALEALAAELGLEDRVTFLGAVPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGLPVVATDV 310 (377)
T ss_pred CCCeEEEEEcCCcchHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcCeeecchhhccCChHHHHHHhcCCCEEEecC
Confidence 889999999999998888888876655 788889999888 9999999999999999999999999999999999999
Q ss_pred Cc-ccccccCCCEEEeC--CHHHHHHHHHHHHhCCCC----CCcHHHHhcCCHHHHHHHHHHHHhc
Q 016975 246 PS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA----LPTEAQRHQLSWESATERFLQVAEL 304 (379)
Q Consensus 246 g~-~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~~----~~~~~~~~~~sw~~~~~~~~~~~~~ 304 (379)
|+ .+.+.++.+|++++ |+++++++|.++++++.. .......+.|+|+.+++++.+.|+.
T Consensus 311 ~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 376 (377)
T cd03798 311 GGIPEIITDGENGLLVPPGDPEALAEAILRLLADPWLRLGRAARRRVAERFSWENVAERLLELYRE 376 (377)
T ss_pred CChHHHhcCCcceeEECCCCHHHHHHHHHHHhcCcHHHHhHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 65 88888988888887 999999999999998763 1222344899999999999998863
No 53
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.96 E-value=4.3e-28 Score=229.84 Aligned_cols=271 Identities=17% Similarity=0.148 Sum_probs=195.4
Q ss_pred CCCCCcEEEEcCCcchhhhhccccccccc-CcEEEEeccChHHHHHHhhcchHHH---HHHHHHHHHHHHHhcceEEEcC
Q 016975 26 PDEVADIAVLEEPEHLTWFHHGKRWKTKF-RYVVGIVHTNYLEYVKREKNGRLQA---FLLKYANSWLVDIYCHKVIRLS 101 (379)
Q Consensus 26 ~~~~~DvV~~~~p~~~~~~~~~~~~~~~~-~~vv~~~h~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~d~vi~~S 101 (379)
...+||+||++.+....... +....... .|++..+|+.++............. .+.+.+.++. ...+|.++++|
T Consensus 96 ~~~~~D~v~~~~~~~~~~~~-~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~vi~~s 173 (394)
T cd03794 96 RRRRPDVIIATSPPLLIALA-ALLLARLKGAPFVLEVRDLWPESAVALGLLKNGSLLYRLLRKLERLI-YRRADAIVVIS 173 (394)
T ss_pred cccCCCEEEEcCChHHHHHH-HHHHHHhcCCCEEEEehhhcchhHHHccCccccchHHHHHHHHHHHH-HhcCCEEEEEC
Confidence 37789999999854443331 22233332 3999999987655543221111111 1222222221 11279999999
Q ss_pred hhhhhhhh------ccceee-cccCCCCccCccccHHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhhcCCcE
Q 016975 102 AATQEYAN------SIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLE 174 (379)
Q Consensus 102 ~~~~~~~~------~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~ 174 (379)
+...+... .++..+ ||++...+.+..............++..++|+|++.+.||++.+++++..+.+. ++++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~-~~~~ 252 (394)
T cd03794 174 PGMREYLVRRGVPPEKISVIPNGVDLELFKPPPADESLRKELGLDDKFVVLYAGNIGRAQGLDTLLEAAALLKDR-PDIR 252 (394)
T ss_pred HHHHHHHHhcCCCcCceEEcCCCCCHHHcCCccchhhhhhccCCCCcEEEEEecCcccccCHHHHHHHHHHHhhc-CCeE
Confidence 88775543 233333 788876665443222122223344577899999999999999999999999876 8999
Q ss_pred EEEEcCCcChHHHHHHHHhcCC-eeEEecCCCCHH--HHHhhcCEEEecCCCCcc-----hhHHHHHHHcCCeEEecCCC
Q 016975 175 VDLYGNGEDFNQIQEAAEKLKI-VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVV-----CTTTAEALAMGKIVVCANHP 246 (379)
Q Consensus 175 l~i~G~g~~~~~l~~~~~~~~l-~v~~~g~~~~~~--~~~~~~dv~v~ps~~E~~-----~~~~~EAma~G~PVI~t~~g 246 (379)
|+++|+|+..+.+++.....+. ++.++|.+++++ ++|+.||++++||..|++ |++++|||+||+|||+++.+
T Consensus 253 l~i~G~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~ 332 (394)
T cd03794 253 FLIVGDGPEKEELKELAKALGLDNVTFLGRVPKEELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDG 332 (394)
T ss_pred EEEeCCcccHHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCCcEEEecCC
Confidence 9999999998888886655554 788999888777 999999999999998865 78899999999999999995
Q ss_pred c-ccccccCCCEEEeC--CHHHHHHHHHHHHhCCCC--CCcHHHH----hcCCHHHHHHHHH
Q 016975 247 S-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQR----HQLSWESATERFL 299 (379)
Q Consensus 247 ~-~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~~~----~~~sw~~~~~~~~ 299 (379)
+ .+.+.++.+|++++ |+++++++|.++++++.. .++++++ ++|||+.++++++
T Consensus 333 ~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 394 (394)
T cd03794 333 ESAELVEEAGAGLVVPPGDPEALAAAILELLDDPEERAEMGENGRRYVEEKFSREKLAERLL 394 (394)
T ss_pred CchhhhccCCcceEeCCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhcHHHHHHhcC
Confidence 5 88888878898887 899999999999987665 4444333 5899999998863
No 54
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.96 E-value=4.4e-28 Score=229.23 Aligned_cols=262 Identities=13% Similarity=0.148 Sum_probs=180.2
Q ss_pred CCCCcEEEEcCCcchhhhhcccccccccCcEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEEEcChhhhh
Q 016975 27 DEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIRLSAATQE 106 (379)
Q Consensus 27 ~~~~DvV~~~~p~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~ 106 (379)
+.++|+||...+....+.. .......|++...|+...... ..+.....+.+...++. ...+|.++++|+.+++
T Consensus 84 ~~~~~~i~~~~~~~~~~~~---~~~~~~~~~v~~~h~~~~~~~---~~~~~~~~~~~~~~~~~-~~~ad~ii~~s~~~~~ 156 (363)
T cd04955 84 KRDIDHVHALGPAIAPFLP---LLRLKGKKVVVNMDGLEWKRA---KWGRPAKRYLKFGEKLA-VKFADRLIADSPGIKE 156 (363)
T ss_pred cCCeEEEEecCccHHHHHH---HHHhcCCCEEEEccCcceeec---ccccchhHHHHHHHHHH-HhhccEEEeCCHHHHH
Confidence 4556667666655433321 122222488888887532111 11111122333333332 2237999999988776
Q ss_pred hhhc----cceee-cccCCCCccCccccHHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCC
Q 016975 107 YANS----IICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNG 181 (379)
Q Consensus 107 ~~~~----~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g 181 (379)
.... ....+ ||+|...+.+. ....... ....+..++|+||+.+.||++.+++++.++.. +++|+++|+|
T Consensus 157 ~~~~~~~~~~~~i~ngv~~~~~~~~--~~~~~~~-~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~---~~~l~ivG~~ 230 (363)
T cd04955 157 YLKEKYGRDSTYIPYGADHVVSSEE--DEILKKY-GLEPGRYYLLVGRIVPENNIDDLIEAFSKSNS---GKKLVIVGNA 230 (363)
T ss_pred HHHHhcCCCCeeeCCCcChhhcchh--hhhHHhc-CCCCCcEEEEEecccccCCHHHHHHHHHhhcc---CceEEEEcCC
Confidence 5532 11333 89997665431 1111111 22234568999999999999999999998753 7999999998
Q ss_pred cChHHHHHHHH-hcC--CeeEEecCCCCHH--HHHhhcCEEEecCCC-CcchhHHHHHHHcCCeEEecCCCc-ccccccC
Q 016975 182 EDFNQIQEAAE-KLK--IVVRVYPGRDHAD--LIFHDYKVFLNPSTT-DVVCTTTAEALAMGKIVVCANHPS-NDFFKQF 254 (379)
Q Consensus 182 ~~~~~l~~~~~-~~~--l~v~~~g~~~~~~--~~~~~~dv~v~ps~~-E~~~~~~~EAma~G~PVI~t~~g~-~e~i~~~ 254 (379)
+....+.+..+ ..+ .++.++|.+++.+ .+|+.+|++++||.. |+||++++|||+||+|||+|+.|+ .|++.+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~~e~~~~- 309 (363)
T cd04955 231 DHNTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAALFYLHGHSVGGTNPSLLEAMAYGCPVLASDNPFNREVLGD- 309 (363)
T ss_pred CCcchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCCEEEeCCccCCCCChHHHHHHHcCCCEEEecCCccceeecC-
Confidence 76555554444 333 3788999998888 999999999999998 999999999999999999999966 777766
Q ss_pred CCEEEeCCHHHHHHHHHHHHhCCCC--CCcHHHH----hcCCHHHHHHHHHHHHh
Q 016975 255 PNCRTYDDRNGFVEATLKALAEEPA--LPTEAQR----HQLSWESATERFLQVAE 303 (379)
Q Consensus 255 ~~g~~~~~~~~l~~~i~~~l~~~~~--~~~~~~~----~~~sw~~~~~~~~~~~~ 303 (379)
+|+++++.+.++++|.++++++.. .++.+++ ++|||+.++++++++|+
T Consensus 310 -~g~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~ 363 (363)
T cd04955 310 -KAIYFKVGDDLASLLEELEADPEEVSAMAKAARERIREKYTWEKIADQYEELYK 363 (363)
T ss_pred -CeeEecCchHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 688877444499999999998754 4444333 57999999999999985
No 55
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.96 E-value=6.2e-28 Score=225.09 Aligned_cols=260 Identities=15% Similarity=0.172 Sum_probs=191.4
Q ss_pred cccccccCCCCCCcEEEEcCCcchhhhhcccccccccCcEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceE
Q 016975 18 VGDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKV 97 (379)
Q Consensus 18 ~~~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 97 (379)
...+.+++.+.+||+||++.+....+.. .+..+..|++...|......... .......++ ....+|.+
T Consensus 72 ~~~~~~~l~~~~~d~i~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~--------~~~~~~~~~-~~~~~d~i 139 (348)
T cd03820 72 LRRLRKLLKNNKPDVVISFLTSLLTFLA---SLGLKIVKLIVSEHNSPDAYKKR--------LRRLLLRRL-LYRRADAV 139 (348)
T ss_pred hHHHHHhhcccCCCEEEEcCchHHHHHH---HHhhccccEEEecCCCccchhhh--------hHHHHHHHH-HHhcCCEE
Confidence 3456778888999999998876222221 11111147888888765443321 001111111 11226999
Q ss_pred EEcChhhhhhh----hccceee-cccCCCCccCccccHHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhhcCC
Q 016975 98 IRLSAATQEYA----NSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAG 172 (379)
Q Consensus 98 i~~S~~~~~~~----~~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~ 172 (379)
+++|+..+... ..++..+ ||++...+.+. ...+++.++|+|++.+.||++.+++++..+.+..++
T Consensus 140 i~~s~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~----------~~~~~~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~ 209 (348)
T cd03820 140 VVLTEEDRALYYKKFNKNVVVIPNPLPFPPEEPS----------SDLKSKRILAVGRLVPQKGFDLLIEAWAKIAKKHPD 209 (348)
T ss_pred EEeCHHHHHHhhccCCCCeEEecCCcChhhcccc----------CCCCCcEEEEEEeeccccCHHHHHHHHHHHHhcCCC
Confidence 99998874211 1233444 78886655432 123356899999999999999999999999888899
Q ss_pred cEEEEEcCCcChHHHHHHHHhcCC--eeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCC-Cc-c
Q 016975 173 LEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH-PS-N 248 (379)
Q Consensus 173 ~~l~i~G~g~~~~~l~~~~~~~~l--~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~-g~-~ 248 (379)
++|+|+|++++...+++.+++.++ ++.+.|..++..++|+.||++++||..|++|++++|||+||+|||+++. ++ .
T Consensus 210 ~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~ 289 (348)
T cd03820 210 WKLRIVGDGPEREALEALIKELGLEDRVILLGFTKNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPS 289 (348)
T ss_pred eEEEEEeCCCCHHHHHHHHHHcCCCCeEEEcCCcchHHHHHHhCCEEEeCccccccCHHHHHHHHcCCCEEEecCCCchH
Confidence 999999999998888888887776 5677787444449999999999999999999999999999999999997 44 5
Q ss_pred cccccCCCEEEeC--CHHHHHHHHHHHHhCCCC--CCcHH---HHhcCCHHHHHHHHH
Q 016975 249 DFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEA---QRHQLSWESATERFL 299 (379)
Q Consensus 249 e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~---~~~~~sw~~~~~~~~ 299 (379)
+++.++.+|++++ |+++++++|.++++++.. .++.+ ..+.|+|+.+++++.
T Consensus 290 ~~~~~~~~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (348)
T cd03820 290 EIIEDGVNGLLVPNGDVEALAEALLRLMEDEELRKRMGANARESAERFSIENIIKQWE 347 (348)
T ss_pred hhhccCcceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCHHHHHHHhc
Confidence 5666667999888 889999999999998765 34443 348999999999875
No 56
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.96 E-value=3.3e-28 Score=229.47 Aligned_cols=256 Identities=16% Similarity=0.160 Sum_probs=184.2
Q ss_pred ccccccCCCCCCcEEEEcCCcchhhhhccccccccc-CcEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceE
Q 016975 19 GDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKF-RYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKV 97 (379)
Q Consensus 19 ~~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~-~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 97 (379)
..+.+.+.+.+||+||++++... |.. ..+.+.. .|++..+|+.+.... .. ...+. .+|.+
T Consensus 68 ~~l~~~~~~~~~dii~~~~~~~~-~~~--~~~~~~~~~~~i~~~h~~~~~~~----------~~----~~~~~--~~~~v 128 (355)
T cd03819 68 ARLRRLIREEKVDIVHARSRAPA-WSA--YLAARRTRPPFVTTVHGFYSVNF----------RY----NAIMA--RGDRV 128 (355)
T ss_pred HHHHHHHHHcCCCEEEECCCchh-HHH--HHHHHhcCCCEEEEeCCchhhHH----------HH----HHHHH--hcCEE
Confidence 34566777889999999875432 221 1122222 399999998754321 11 11111 25999
Q ss_pred EEcChhhhhhhh-------ccceee-cccCCCCccCccccH-----HHhhcCCCCCcceEEEEEecccccCHHHHHHHHH
Q 016975 98 IRLSAATQEYAN-------SIICNV-HGVNPKFLEIGKKKK-----EQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLD 164 (379)
Q Consensus 98 i~~S~~~~~~~~-------~~i~~i-~gvd~~~~~~~~~~~-----~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~ 164 (379)
+++|+...+... .++..+ ||+|...+.+..... .+......++.+.++|+||+.+.||++.+++++.
T Consensus 129 i~~s~~~~~~~~~~~~~~~~k~~~i~ngi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Gr~~~~Kg~~~li~~~~ 208 (355)
T cd03819 129 IAVSNFIADHIRENYGVDPDRIRVIPRGVDLDRFDPGAVPPERILALAREWPLPKGKPVILLPGRLTRWKGQEVFIEALA 208 (355)
T ss_pred EEeCHHHHHHHHHhcCCChhhEEEecCCccccccCccccchHHHHHHHHHcCCCCCceEEEEeeccccccCHHHHHHHHH
Confidence 999988665443 233444 899988775433211 1122233455778999999999999999999999
Q ss_pred HhHhhcCCcEEEEEcCCcChHH----HHHHHHhcCC--eeEEecCCCCHHHHHhhcCEEEecC-CCCcchhHHHHHHHcC
Q 016975 165 DHQKELAGLEVDLYGNGEDFNQ----IQEAAEKLKI--VVRVYPGRDHADLIFHDYKVFLNPS-TTDVVCTTTAEALAMG 237 (379)
Q Consensus 165 ~l~~~~~~~~l~i~G~g~~~~~----l~~~~~~~~l--~v~~~g~~~~~~~~~~~~dv~v~ps-~~E~~~~~~~EAma~G 237 (379)
.+++..++++++++|+++.... +.+.+++.++ ++.++|..++..++|+.||++++|| ..|++|++++||||||
T Consensus 209 ~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G 288 (355)
T cd03819 209 RLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMG 288 (355)
T ss_pred HHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcC
Confidence 9988778999999998876433 3455566554 6888899655559999999999999 7899999999999999
Q ss_pred CeEEecCCCc-ccccccCCCEEEeC--CHHHHHHHHHHHHhCCCC---CCcHHHH----hcCCHHH
Q 016975 238 KIVVCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA---LPTEAQR----HQLSWES 293 (379)
Q Consensus 238 ~PVI~t~~g~-~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~~---~~~~~~~----~~~sw~~ 293 (379)
+|||+++.|+ .|++.++.+|++++ |+++++++|..++...+. +++++++ ++|+|+.
T Consensus 289 ~PvI~~~~~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~~~f~~~~ 354 (355)
T cd03819 289 RPVIASDHGGARETVRPGETGLLVPPGDAEALAQALDQILSLLPEGRAKMFAKARMCVETLFSYDR 354 (355)
T ss_pred CCEEEcCCCCcHHHHhCCCceEEeCCCCHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 9999999955 88898888998887 999999999766654333 3444333 7888875
No 57
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.96 E-value=2.3e-28 Score=230.34 Aligned_cols=257 Identities=15% Similarity=0.097 Sum_probs=192.2
Q ss_pred cccccCCCCCCcEEEEcCCcchhhhhcccccccc-cCcEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEE
Q 016975 20 DISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTK-FRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVI 98 (379)
Q Consensus 20 ~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~-~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 98 (379)
.+.+.+.+.++|+||++.+....... ...... ..+++.++|........ . . ......+ ..+|.++
T Consensus 70 ~~~~~~~~~~~Dii~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----~-~-----~~~~~~~--~~~~~vi 135 (355)
T cd03799 70 VLARELRRLGIDHIHAHFGTTPATVA--MLASRLGGIPYSFTAHGKDIFRSP----D-A-----IDLDEKL--ARADFVV 135 (355)
T ss_pred HHHHHHHhcCCCEEEECCCCchHHHH--HHHHHhcCCCEEEEEecccccccC----c-h-----HHHHHHH--hhCCEEE
Confidence 35555667899999998764322221 011111 23888888865422111 0 0 1111111 1259999
Q ss_pred EcChhhhhhhhc-------cceee-cccCCCCccCccccHHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhhc
Q 016975 99 RLSAATQEYANS-------IICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKEL 170 (379)
Q Consensus 99 ~~S~~~~~~~~~-------~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~ 170 (379)
++|+..++...+ ++.++ ||+|.+.+.+... ....++..++|+|++.+.||++.+++++..+....
T Consensus 136 ~~s~~~~~~l~~~~~~~~~~~~vi~~~~d~~~~~~~~~-------~~~~~~~~i~~~g~~~~~k~~~~l~~~~~~l~~~~ 208 (355)
T cd03799 136 AISEYNRQQLIRLLGCDPDKIHVVHCGVDLERFPPRPP-------PPPGEPLRILSVGRLVEKKGLDYLLEALALLKDRG 208 (355)
T ss_pred ECCHHHHHHHHHhcCCCcccEEEEeCCcCHHHcCCccc-------cccCCCeEEEEEeeeccccCHHHHHHHHHHHhhcC
Confidence 999887755443 23333 8999877754430 12234668999999999999999999999998877
Q ss_pred CCcEEEEEcCCcChHHHHHHHHhcCC--eeEEecCCCCHH--HHHhhcCEEEecCCC------CcchhHHHHHHHcCCeE
Q 016975 171 AGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPSTT------DVVCTTTAEALAMGKIV 240 (379)
Q Consensus 171 ~~~~l~i~G~g~~~~~l~~~~~~~~l--~v~~~g~~~~~~--~~~~~~dv~v~ps~~------E~~~~~~~EAma~G~PV 240 (379)
++++++++|+++..+.+++.+++.++ ++.+.|.+++.+ .+|+.||++++||.. |++|++++|||+||+||
T Consensus 209 ~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pv 288 (355)
T cd03799 209 IDFRLDIVGDGPLRDELEALIAELGLEDRVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPV 288 (355)
T ss_pred CCeEEEEEECCccHHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCCE
Confidence 89999999999999999988888765 688889998777 999999999999998 99999999999999999
Q ss_pred EecCCCc-ccccccCCCEEEeC--CHHHHHHHHHHHHhCCCC--CCcHHHH----hcCCHHHHHHH
Q 016975 241 VCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQR----HQLSWESATER 297 (379)
Q Consensus 241 I~t~~g~-~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~~~----~~~sw~~~~~~ 297 (379)
|+++.|+ .+++.++.+|++++ |+++++++|.++++++.. .++++++ ++|+|+..+++
T Consensus 289 i~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~ 354 (355)
T cd03799 289 ISTDVSGIPELVEDGETGLLVPPGDPEALADAIERLLDDPELRREMGEAGRARVEEEFDIRKQAAR 354 (355)
T ss_pred EecCCCCcchhhhCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHhhc
Confidence 9999965 88898888998887 899999999999988764 4444333 78999998875
No 58
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.96 E-value=3.3e-28 Score=229.58 Aligned_cols=268 Identities=16% Similarity=0.140 Sum_probs=189.5
Q ss_pred ccccCCCCCCcEEEEcCCcchhhhhcccccccccCcEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEEEc
Q 016975 21 ISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIRL 100 (379)
Q Consensus 21 l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~ 100 (379)
....+...++|+||++.+..... .....|++..+|+..+......................+.. +|.++++
T Consensus 77 ~~~~~~~~~~Dii~~~~~~~~~~-------~~~~~~~i~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~i~~ 147 (365)
T cd03809 77 DRLLLLLLGLDLLHSPHNTAPLL-------RLRGVPVVVTIHDLIPLRFPEYFSPGFRRYFRRLLRRALRR--ADAIITV 147 (365)
T ss_pred HHHHhhhcCCCeeeecccccCcc-------cCCCCCEEEEeccchhhhCcccCCHHHHHHHHHHHHHHHHH--cCEEEEc
Confidence 33444457899999987554432 11224899999986554332111111122222223332222 5999999
Q ss_pred Chhhhhhhh-------ccceee-cccCCCCccCccccHHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhhcCC
Q 016975 101 SAATQEYAN-------SIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAG 172 (379)
Q Consensus 101 S~~~~~~~~-------~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~ 172 (379)
|+.+.+... .++.++ ||+|...+....... ........+++.++|+|++.+.||++.+++++..+.+..++
T Consensus 148 s~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~G~~~~~K~~~~~l~~~~~~~~~~~~ 226 (365)
T cd03809 148 SEATKRDLLRYLGVPPDKIVVIPLGVDPRFRPPPAEAE-VLRALYLLPRPYFLYVGTIEPRKNLERLLEAFARLPAKGPD 226 (365)
T ss_pred cHHHHHHHHHHhCcCHHHEEeeccccCccccCCCchHH-HHHHhcCCCCCeEEEeCCCccccCHHHHHHHHHHHHHhcCC
Confidence 988665432 233444 899987775543322 22223444577899999999999999999999999988888
Q ss_pred cEEEEEcCCcCh-HHHHHHHHhcC--CeeEEecCCCCHH--HHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc
Q 016975 173 LEVDLYGNGEDF-NQIQEAAEKLK--IVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS 247 (379)
Q Consensus 173 ~~l~i~G~g~~~-~~l~~~~~~~~--l~v~~~g~~~~~~--~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~ 247 (379)
++|+++|.+... .......++.+ .++.++|.+++.+ ++|+.||++++||..|++|++++|||++|+|||+++.|+
T Consensus 227 ~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~ 306 (365)
T cd03809 227 PKLVIVGKRGWLNEELLARLRELGLGDRVRFLGYVSDEELAALYRGARAFVFPSLYEGFGLPVLEAMACGTPVIASNISS 306 (365)
T ss_pred CCEEEecCCccccHHHHHHHHHcCCCCeEEECCCCChhHHHHHHhhhhhhcccchhccCCCCHHHHhcCCCcEEecCCCC
Confidence 999999976652 33333323333 3788889998887 999999999999999999999999999999999999966
Q ss_pred -ccccccCCCEEEeC--CHHHHHHHHHHHHhCCCC--CCcHHH---HhcCCHHHHHHHHHH
Q 016975 248 -NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQ---RHQLSWESATERFLQ 300 (379)
Q Consensus 248 -~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~~---~~~~sw~~~~~~~~~ 300 (379)
.|++.+ +|++++ |+++++++|.++++++.. .+++++ .++|+|+.+++++++
T Consensus 307 ~~e~~~~--~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~sw~~~~~~~~~ 365 (365)
T cd03809 307 LPEVAGD--AALYFDPLDPEALAAAIERLLEDPALREELRERGLARAKRFSWEKTARRTLD 365 (365)
T ss_pred ccceecC--ceeeeCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCHHHHHHHHhC
Confidence 777654 466655 899999999999887765 444433 489999999998863
No 59
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.96 E-value=1.1e-27 Score=226.71 Aligned_cols=277 Identities=19% Similarity=0.139 Sum_probs=193.2
Q ss_pred cccccCCCCCCcEEEEcCCcchhhhhccccccc--ccCcEEEEeccChHHHHHHh-------------------hcc--h
Q 016975 20 DISEVIPDEVADIAVLEEPEHLTWFHHGKRWKT--KFRYVVGIVHTNYLEYVKRE-------------------KNG--R 76 (379)
Q Consensus 20 ~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~--~~~~vv~~~h~~~~~~~~~~-------------------~~~--~ 76 (379)
.+.+.+...+||+||++.+....+.. ..+.. +..|+|.++|+.++...... ... .
T Consensus 42 ~~~~~~~~~~~diih~~~~~~~~~~~--~~~~~~~~~~~~v~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (365)
T cd03825 42 ALISKIEIINADIVHLHWIHGGFLSI--EDLSKLLDRKPVVWTLHDMWPFTGGCHYPGGCDRYKTECGNCPQLGSYPEKD 119 (365)
T ss_pred hhhhChhcccCCEEEEEccccCccCH--HHHHHHHcCCCEEEEcccCcccccccCCccccccccccCCCCCCCCCCCccc
Confidence 45667778899999998744322211 01111 12499999997643211000 000 0
Q ss_pred HHHHHHHHHHHHHHHHhcceEEEcChhhhhhhhc-------cceee-cccCCCCccCccccHHHhhcCCCCCcceEEEEE
Q 016975 77 LQAFLLKYANSWLVDIYCHKVIRLSAATQEYANS-------IICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIG 148 (379)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~-------~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vg 148 (379)
......+....... ..++.++++|+.+++.... ++.++ ||+|.+.+.+.............+++..+++.|
T Consensus 120 ~~~~~~~~~~~~~~-~~~~~~v~~s~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 198 (365)
T cd03825 120 LSRWIWRRKRKAWA-DLNLTIVAPSRWLADCARSSSLFKGIPIEVIPNGIDTTIFRPRDKREARKRLGLPADKKIILFGA 198 (365)
T ss_pred HHHHHHHHHHHHhc-cCCcEEEehhHHHHHHHHhccccCCCceEEeCCCCcccccCCCcHHHHHHHhCCCCCCeEEEEEe
Confidence 11122222222111 1257899999887765533 34444 899988776554443333444444556677777
Q ss_pred eccc--ccCHHHHHHHHHHhHhh-cCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHH---HHHhhcCEEEecCC
Q 016975 149 KMVW--SKGYKELLELLDDHQKE-LAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD---LIFHDYKVFLNPST 222 (379)
Q Consensus 149 rl~~--~Kg~~~li~a~~~l~~~-~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~---~~~~~~dv~v~ps~ 222 (379)
+... .||++.+++++..+.++ .++++++++|+++..... ....++.++|.+++.+ .+|+.||++++||.
T Consensus 199 ~~~~~~~K~~~~ll~a~~~l~~~~~~~~~~~i~G~~~~~~~~-----~~~~~v~~~g~~~~~~~~~~~~~~ad~~l~ps~ 273 (365)
T cd03825 199 VGGTDPRKGFDELIEALKRLAERWKDDIELVVFGASDPEIPP-----DLPFPVHYLGSLNDDESLALIYSAADVFVVPSL 273 (365)
T ss_pred cCCCccccCHHHHHHHHHHhhhccCCCeEEEEeCCCchhhhc-----cCCCceEecCCcCCHHHHHHHHHhCCEEEeccc
Confidence 7655 89999999999998765 578999999998764331 3444788889998544 89999999999999
Q ss_pred CCcchhHHHHHHHcCCeEEecCCCc-ccccccCCCEEEeC--CHHHHHHHHHHHHhCCCC--CCcHHH----HhcCCHHH
Q 016975 223 TDVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQ----RHQLSWES 293 (379)
Q Consensus 223 ~E~~~~~~~EAma~G~PVI~t~~g~-~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~~----~~~~sw~~ 293 (379)
.|++|++++|||+||+|||+++.|+ .|++.++.+|++++ |++++++++.++++++.. +++.++ ..+|||+.
T Consensus 274 ~e~~g~~~~Eam~~g~PvI~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~s~~~ 353 (365)
T cd03825 274 QENFPNTAIEALACGTPVVAFDVGGIPDIVDHGVTGYLAKPGDPEDLAEGIEWLLADPDEREELGEAARELAENEFDSRV 353 (365)
T ss_pred cccccHHHHHHHhcCCCEEEecCCCChhheeCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHH
Confidence 9999999999999999999999955 88998888999887 899999999999988753 444432 37899999
Q ss_pred HHHHHHHHHhc
Q 016975 294 ATERFLQVAEL 304 (379)
Q Consensus 294 ~~~~~~~~~~~ 304 (379)
++++++++|+.
T Consensus 354 ~~~~~~~~y~~ 364 (365)
T cd03825 354 QAKRYLSLYEE 364 (365)
T ss_pred HHHHHHHHHhh
Confidence 99999999974
No 60
>PHA01630 putative group 1 glycosyl transferase
Probab=99.96 E-value=2.1e-27 Score=220.66 Aligned_cols=196 Identities=16% Similarity=0.136 Sum_probs=151.0
Q ss_pred cceEEEcChhhhhhhh-------ccceee-cccCCCCccCccccHHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHH
Q 016975 94 CHKVIRLSAATQEYAN-------SIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDD 165 (379)
Q Consensus 94 ~d~vi~~S~~~~~~~~-------~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~ 165 (379)
+|.++++|+.+++... +++.++ ||+|.+.|.+.... ...+.+++++|++.++||++.+++|++.
T Consensus 95 ad~ii~~S~~~~~~l~~~g~~~~~~i~vIpNGVd~~~f~~~~~~--------~~~~~vl~~~g~~~~~Kg~d~Li~A~~~ 166 (331)
T PHA01630 95 VDEIVVPSQWSKNAFYTSGLKIPQPIYVIPHNLNPRMFEYKPKE--------KPHPCVLAILPHSWDRKGGDIVVKIFHE 166 (331)
T ss_pred CCEEEECCHHHHHHHHHcCCCCCCCEEEECCCCCHHHcCCCccc--------cCCCEEEEEeccccccCCHHHHHHHHHH
Confidence 6999999988775432 234444 89998877654221 1224466677789999999999999999
Q ss_pred hHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHH--HHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEec
Q 016975 166 HQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCA 243 (379)
Q Consensus 166 l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~--~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t 243 (379)
+.++.++++++++|++.....+. ++. .+.+.+++++ ++|+.||+|++||..|+||++++||||||+|||+|
T Consensus 167 l~~~~~~~~llivG~~~~~~~l~------~~~-~~~~~v~~~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas 239 (331)
T PHA01630 167 LQNEGYDFYFLIKSSNMLDPRLF------GLN-GVKTPLPDDDIYSLFAGCDILFYPVRGGAFEIPVIEALALGLDVVVT 239 (331)
T ss_pred HHhhCCCEEEEEEeCcccchhhc------ccc-ceeccCCHHHHHHHHHhCCEEEECCccccCChHHHHHHHcCCCEEEe
Confidence 98888899999999766533221 111 1345577666 99999999999999999999999999999999999
Q ss_pred CCCc-ccccccCCCEEEe--------------------C-CHHHHHHHHHHHHhCC--CC---CCcH---HHHhcCCHHH
Q 016975 244 NHPS-NDFFKQFPNCRTY--------------------D-DRNGFVEATLKALAEE--PA---LPTE---AQRHQLSWES 293 (379)
Q Consensus 244 ~~g~-~e~i~~~~~g~~~--------------------~-~~~~l~~~i~~~l~~~--~~---~~~~---~~~~~~sw~~ 293 (379)
+.|+ .|++.++.||+++ + |.+++++++.+++.++ +. .+.. ...++|||++
T Consensus 240 ~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~fs~~~ 319 (331)
T PHA01630 240 EKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVGYFLDPDIEDAYQKLLEALANWTPEKKKENLEGRAILYRENYSYNA 319 (331)
T ss_pred CCCCchhhccCCCceEEeeecccccccccCCcccccccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 9966 8999998887654 4 7789999999999874 22 1122 2348999999
Q ss_pred HHHHHHHHHhc
Q 016975 294 ATERFLQVAEL 304 (379)
Q Consensus 294 ~~~~~~~~~~~ 304 (379)
++++++++|+.
T Consensus 320 ia~k~~~l~~~ 330 (331)
T PHA01630 320 IAKMWEKILEK 330 (331)
T ss_pred HHHHHHHHHhc
Confidence 99999999963
No 61
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.96 E-value=5.2e-27 Score=221.54 Aligned_cols=250 Identities=14% Similarity=0.114 Sum_probs=178.5
Q ss_pred ccCCCCCCcEEEEcCCcchhhhhcccccccccCcEEEEeccCh-------HHHHHHhhcc--hHHHHHHHHHHHHHHHHh
Q 016975 23 EVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNY-------LEYVKREKNG--RLQAFLLKYANSWLVDIY 93 (379)
Q Consensus 23 ~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~~vv~~~h~~~-------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 93 (379)
+.+...++|+|+++.+...... ......+.+..+|+.. ..+....... .....+...+..+..+.+
T Consensus 77 ~~~~~~~~D~v~~~~~~~~~~~-----~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (351)
T cd03804 77 EQFDLSGYDLVISSSHAVAKGV-----ITRPDQLHICYCHTPMRYAWDLYHDYLKESGLGKRLALRLLLHYLRIWDRRSA 151 (351)
T ss_pred HhccccCCCEEEEcCcHHhccc-----cCCCCCcEEEEeCCchHHHhcCchHhhhhcccchhhHHHHHHHHHHHHHHHHh
Confidence 3445678999998765332221 1122237777888632 1222111110 011223333343333333
Q ss_pred --cceEEEcChhhhhhhhc----cceee-cccCCCCccCccccHHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHh
Q 016975 94 --CHKVIRLSAATQEYANS----IICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDH 166 (379)
Q Consensus 94 --~d~vi~~S~~~~~~~~~----~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l 166 (379)
+|.++++|+.+++...+ ...++ +|+|.+.+.+.. ..+..++|+|++.+.||++.+++++..+
T Consensus 152 ~~~d~ii~~S~~~~~~~~~~~~~~~~vi~~~~d~~~~~~~~-----------~~~~~il~~G~~~~~K~~~~li~a~~~~ 220 (351)
T cd03804 152 ARVDYFIANSRFVARRIKKYYGRDATVIYPPVDTDRFTPAE-----------EKEDYYLSVGRLVPYKRIDLAIEAFNKL 220 (351)
T ss_pred cCCCEEEECCHHHHHHHHHHhCCCcEEECCCCCHhhcCcCC-----------CCCCEEEEEEcCccccChHHHHHHHHHC
Confidence 79999999887755432 22333 788877665432 1234699999999999999999999875
Q ss_pred HhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHH--HHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecC
Q 016975 167 QKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCAN 244 (379)
Q Consensus 167 ~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~--~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~ 244 (379)
+ ++|+|+|+|++.+.+++ ....++.|+|.+++++ ++|+.||++++||. |+||++++||||||+|||+++
T Consensus 221 ----~-~~l~ivG~g~~~~~l~~---~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~-e~~g~~~~Eama~G~Pvi~~~ 291 (351)
T cd03804 221 ----G-KRLVVIGDGPELDRLRA---KAGPNVTFLGRVSDEELRDLYARARAFLFPAE-EDFGIVPVEAMASGTPVIAYG 291 (351)
T ss_pred ----C-CcEEEEECChhHHHHHh---hcCCCEEEecCCCHHHHHHHHHhCCEEEECCc-CCCCchHHHHHHcCCCEEEeC
Confidence 3 88999999998777766 3445899999999987 99999999999999 999999999999999999999
Q ss_pred CCc-ccccccCCCEEEeC--CHHHHHHHHHHHHhCCCC---CCcHHHHhcCCHHHHHHHH
Q 016975 245 HPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA---LPTEAQRHQLSWESATERF 298 (379)
Q Consensus 245 ~g~-~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~~---~~~~~~~~~~sw~~~~~~~ 298 (379)
.|+ .|++.++.+|++++ |+++++++|..+++++.. .+. +...+|+|++..+++
T Consensus 292 ~~~~~e~i~~~~~G~~~~~~~~~~la~~i~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 350 (351)
T cd03804 292 KGGALETVIDGVTGILFEEQTVESLAAAVERFEKNEDFDPQAIR-AHAERFSESRFREKI 350 (351)
T ss_pred CCCCcceeeCCCCEEEeCCCCHHHHHHHHHHHHhCcccCHHHHH-HHHHhcCHHHHHHHh
Confidence 955 88999999999886 899999999999998742 122 223689999988775
No 62
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.96 E-value=2.8e-27 Score=221.66 Aligned_cols=267 Identities=18% Similarity=0.168 Sum_probs=188.9
Q ss_pred cccccCCCCCCcEEEEcCCcchhhhhcccccccccCcEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEEE
Q 016975 20 DISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIR 99 (379)
Q Consensus 20 ~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 99 (379)
.+.+.+++.+||+||++......+.. ...+.....+++...|+....... . .........+.++.. ..+|.+++
T Consensus 71 ~~~~~~~~~~~dvv~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~-~~~d~ii~ 144 (359)
T cd03808 71 RLYRLLRKERPDIVHTHTPKPGILGR-LAARLAGVPKVIYTVHGLGFVFTS---G-GLKRRLYLLLERLAL-RFTDKVIF 144 (359)
T ss_pred HHHHHHHhcCCCEEEEccccchhHHH-HHHHHcCCCCEEEEecCcchhhcc---c-hhHHHHHHHHHHHHH-hhccEEEE
Confidence 45667778899999998644322221 001112223777777765433221 1 111222333333321 22599999
Q ss_pred cChhhhhhhhcc--------ceee-cccCCCCccCccccHHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhhc
Q 016975 100 LSAATQEYANSI--------ICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKEL 170 (379)
Q Consensus 100 ~S~~~~~~~~~~--------i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~ 170 (379)
+|+...+..... +... +|+|...+.+.... ...+++.++|+|++.+.||++.+++++..+.+..
T Consensus 145 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~ 217 (359)
T cd03808 145 QNEDDRDLALKLGIIKKKKTVLIPGSGVDLDRFSPSPEP-------IPEDDPVFLFVARLLKDKGIDELLEAARILKAKG 217 (359)
T ss_pred cCHHHHHHHHHhcCCCcCceEEecCCCCChhhcCccccc-------cCCCCcEEEEEeccccccCHHHHHHHHHHHHhcC
Confidence 998866544321 1111 67777655433221 1234678999999999999999999999998878
Q ss_pred CCcEEEEEcCCcChHHHHHH-HHhcC--CeeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc
Q 016975 171 AGLEVDLYGNGEDFNQIQEA-AEKLK--IVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS 247 (379)
Q Consensus 171 ~~~~l~i~G~g~~~~~l~~~-~~~~~--l~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~ 247 (379)
++++|+|+|.++........ +.+.+ .++.+.|..++..++|+.||++++||..|++|++++|||+||+|||+|+.++
T Consensus 218 ~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~ 297 (359)
T cd03808 218 PNVRLLLVGDGDEENPAAILEIEKLGLEGRVEFLGFRDDVPELLAAADVFVLPSYREGLPRVLLEAMAMGRPVIATDVPG 297 (359)
T ss_pred CCeEEEEEcCCCcchhhHHHHHHhcCCcceEEEeeccccHHHHHHhccEEEecCcccCcchHHHHHHHcCCCEEEecCCC
Confidence 89999999998875555443 33433 3788889866666999999999999999999999999999999999999955
Q ss_pred -ccccccCCCEEEeC--CHHHHHHHHHHHHhCCCC--CCcHHH----HhcCCHHHHHHHHH
Q 016975 248 -NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQ----RHQLSWESATERFL 299 (379)
Q Consensus 248 -~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~~----~~~~sw~~~~~~~~ 299 (379)
.+++.++.+|++++ |+++++++|.+++.++.. .++.++ .++|+|+.++++++
T Consensus 298 ~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 358 (359)
T cd03808 298 CREAVIDGVNGFLVPPGDAEALADAIERLIEDPELRARMGQAARKRAEEEFDEEIVVKKLL 358 (359)
T ss_pred chhhhhcCcceEEECCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 88888889999987 799999999999888755 344432 48899999998875
No 63
>PHA01633 putative glycosyl transferase group 1
Probab=99.96 E-value=9.1e-27 Score=214.21 Aligned_cols=223 Identities=15% Similarity=0.147 Sum_probs=158.2
Q ss_pred CcEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEEEcChhhhhhhhc-c----ceeecccCCCCccCcccc
Q 016975 55 RYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIRLSAATQEYANS-I----ICNVHGVNPKFLEIGKKK 129 (379)
Q Consensus 55 ~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~~~~~-~----i~~i~gvd~~~~~~~~~~ 129 (379)
++++.++|+.+.. ...++++.+. +.+|++|+.+++...+ + +...+|+|.+.|.+....
T Consensus 71 ~~~~tt~~g~~~~---------------~~y~~~m~~~--~~vIavS~~t~~~L~~~G~~~~i~I~~GVD~~~f~p~~~~ 133 (335)
T PHA01633 71 KYFYTTCDGIPNI---------------EIVNKYLLQD--VKFIPNSKFSAENLQEVGLQVDLPVFHGINFKIVENAEKL 133 (335)
T ss_pred CceEEeeCCcCch---------------HHHHHHHhcC--CEEEeCCHHHHHHHHHhCCCCceeeeCCCChhhcCccchh
Confidence 5788888876521 2334444343 7999999888765432 2 234489999888765421
Q ss_pred -HH-HhhcC-CCCCcceEEEEEecccccCHHHHHHHHHHhHhhcCC----cEEEEEcCCcChHHHHHHHHhcCCeeEEec
Q 016975 130 -KE-QQQNG-THAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAG----LEVDLYGNGEDFNQIQEAAEKLKIVVRVYP 202 (379)
Q Consensus 130 -~~-~~~~~-~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~----~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g 202 (379)
.. +.+.. ..++.+.++++||+.++||++.+++|+..+.++.|+ ++++++|.+ .+++ ..+..++.|.|
T Consensus 134 ~~~~r~~~~~~~~~~~~i~~vGRl~~~KG~~~LI~A~~~L~~~~p~~~~~i~l~ivG~~----~~~~--l~l~~~V~f~g 207 (335)
T PHA01633 134 VPQLKQKLDKDFPDTIKFGIVSGLTKRKNMDLMLQVFNELNTKYPDIAKKIHFFVISHK----QFTQ--LEVPANVHFVA 207 (335)
T ss_pred hHHHHHHhCcCCCCCeEEEEEeCCccccCHHHHHHHHHHHHHhCCCccccEEEEEEcHH----HHHH--cCCCCcEEEEe
Confidence 11 11222 124567899999999999999999999999877765 578888742 2221 12233788885
Q ss_pred ---CCCCHH--HHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc-cccccc------------------CCCEE
Q 016975 203 ---GRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQ------------------FPNCR 258 (379)
Q Consensus 203 ---~~~~~~--~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-~e~i~~------------------~~~g~ 258 (379)
.++..+ ++|+.+|+||+||..|+||++++||||||+|||+++.|+ .|++.+ ...|+
T Consensus 208 ~~G~~~~~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~g~ 287 (335)
T PHA01633 208 EFGHNSREYIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYYDKEHGQKW 287 (335)
T ss_pred cCCCCCHHHHHHHHHhCCEEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHhcCcccCcee
Confidence 445555 999999999999999999999999999999999999965 665442 12356
Q ss_pred EeC--CHHHHHHHHHHHHhCCCC-CCcH---HHHhcCCHHHHHHHHHH
Q 016975 259 TYD--DRNGFVEATLKALAEEPA-LPTE---AQRHQLSWESATERFLQ 300 (379)
Q Consensus 259 ~~~--~~~~l~~~i~~~l~~~~~-~~~~---~~~~~~sw~~~~~~~~~ 300 (379)
.++ |+++++++|..++..... ..+. +..+.|+|+.+.+++++
T Consensus 288 ~~~~~d~~~la~ai~~~~~~~~~~~~~~~~~~~a~~f~~~~~~~~~~~ 335 (335)
T PHA01633 288 KIHKFQIEDMANAIILAFELQDREERSMKLKELAKKYDIRNLYTRFLE 335 (335)
T ss_pred eecCCCHHHHHHHHHHHHhccChhhhhHHHHHHHHhcCHHHHHHHhhC
Confidence 666 999999999998665433 2222 34489999999999864
No 64
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.95 E-value=2.2e-27 Score=223.12 Aligned_cols=256 Identities=16% Similarity=0.145 Sum_probs=191.7
Q ss_pred cccccCCCCCCcEEEEcCCcchhhhhccccccccc-CcEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEE
Q 016975 20 DISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKF-RYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVI 98 (379)
Q Consensus 20 ~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~-~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 98 (379)
.+.+++.+.+||+||++.+..+... ...+.++. .|++..+|+.+..... ...... ..|.++
T Consensus 87 ~~~~~~~~~~~dii~~~~~~~~~~~--~~~~~~~~~~~~i~~~hd~~~~~~~-----------~~~~~~-----~~d~ii 148 (359)
T cd03823 87 EFARLLEDFRPDVVHFHHLQGLGVS--ILRAARDRGIPIVLTLHDYWLICPR-----------QGLFKK-----GGDAVI 148 (359)
T ss_pred HHHHHHHHcCCCEEEECCccchHHH--HHHHHHhcCCCEEEEEeeeeeecch-----------hhhhcc-----CCCEEE
Confidence 3556677889999999987544333 11222233 4999999975421110 000000 018999
Q ss_pred EcChhhhhhhhc------cceee-cccCCCCccCccccHHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhhcC
Q 016975 99 RLSAATQEYANS------IICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELA 171 (379)
Q Consensus 99 ~~S~~~~~~~~~------~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~ 171 (379)
++|+...+...+ ++..+ ||+|...+.+... ....+++.++|+|++.+.||++.+++++..+.. +
T Consensus 149 ~~s~~~~~~~~~~~~~~~~~~vi~n~~~~~~~~~~~~-------~~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~--~ 219 (359)
T cd03823 149 APSRFLLDRYVANGLFAEKISVIRNGIDLDRAKRPRR-------APPGGRLRFGFIGQLTPHKGVDLLLEAFKRLPR--G 219 (359)
T ss_pred EeCHHHHHHHHHcCCCccceEEecCCcChhhcccccc-------CCCCCceEEEEEecCccccCHHHHHHHHHHHHh--c
Confidence 999886654432 33333 8999876654322 123446789999999999999999999999876 6
Q ss_pred CcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHH--HHHhhcCEEEecCC-CCcchhHHHHHHHcCCeEEecCCCc-
Q 016975 172 GLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPST-TDVVCTTTAEALAMGKIVVCANHPS- 247 (379)
Q Consensus 172 ~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~--~~~~~~dv~v~ps~-~E~~~~~~~EAma~G~PVI~t~~g~- 247 (379)
+++|+++|.++......... ....++.++|.++..+ ++|+.||++++||. .|++|++++|||+||+|||+|+.|+
T Consensus 220 ~~~l~i~G~~~~~~~~~~~~-~~~~~v~~~g~~~~~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~ 298 (359)
T cd03823 220 DIELVIVGNGLELEEESYEL-EGDPRVEFLGAYPQEEIDDFYAEIDVLVVPSIWPENFPLVIREALAAGVPVIASDIGGM 298 (359)
T ss_pred CcEEEEEcCchhhhHHHHhh-cCCCeEEEeCCCCHHHHHHHHHhCCEEEEcCcccCCCChHHHHHHHCCCCEEECCCCCH
Confidence 89999999988865554433 3445889999998777 99999999999998 6999999999999999999999965
Q ss_pred ccccccCCCEEEeC--CHHHHHHHHHHHHhCCCC--CCcHHHHhcCCHHHHHHHHHHHHh
Q 016975 248 NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQRHQLSWESATERFLQVAE 303 (379)
Q Consensus 248 ~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~~~~~~sw~~~~~~~~~~~~ 303 (379)
.|++.++.+|++++ |+++++++|.++++++.. .++...++.++++.++++++++|+
T Consensus 299 ~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (359)
T cd03823 299 AELVRDGVNGLLFPPGDAEDLAAALERLIDDPDLLERLRAGIEPPRSIEDQAEEYLKLYR 358 (359)
T ss_pred HHHhcCCCcEEEECCCCHHHHHHHHHHHHhChHHHHHHHHhHHHhhhHHHHHHHHHHHhh
Confidence 88898888999888 799999999999997655 556666677777999999999886
No 65
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.95 E-value=2.9e-26 Score=214.04 Aligned_cols=246 Identities=15% Similarity=0.121 Sum_probs=179.0
Q ss_pred ccccccCCCCCCcEEEEcCCcchhhhhcccccccccCcEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEE
Q 016975 19 GDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVI 98 (379)
Q Consensus 19 ~~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 98 (379)
..+.+++.+.+||+||++.. ...+.. .........|++..+|+........... .. ...... ...+|.++
T Consensus 71 ~~~~~~~~~~~~dii~~~~~-~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~----~~~~~~--~~~~d~ii 140 (353)
T cd03811 71 LRLRRLLRKEKPDVVISHLT-TTPNVL-ALLAARLGTKLIVWEHNSLSLELKRKLR--LL----LLIRKL--YRRADKIV 140 (353)
T ss_pred HHHHHHHHhcCCCEEEEcCc-cchhHH-HHHHhhcCCceEEEEcCcchhhhccchh--HH----HHHHhh--ccccceEE
Confidence 35677777889999999886 122111 0011111349999999887655421111 00 111111 11269999
Q ss_pred EcChhhhhhhh-------ccceee-cccCCCCccCccccHHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhhc
Q 016975 99 RLSAATQEYAN-------SIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKEL 170 (379)
Q Consensus 99 ~~S~~~~~~~~-------~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~ 170 (379)
++|+...+... .++..+ ||+|...+.+...... ......++..++|+|++.+.||++.+++++..+....
T Consensus 141 ~~s~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~~ 218 (353)
T cd03811 141 AVSEGVKEDLLKLLGIPPDKIEVIYNPIDIEEIRALAEEPL--ELGIPPDGPVILAVGRLSPQKGFDTLIRAFALLRKEG 218 (353)
T ss_pred EeccchhhhHHHhhcCCccccEEecCCcChhhcCcccchhh--hcCCCCCceEEEEEecchhhcChHHHHHHHHHhhhcC
Confidence 99987665432 233444 8999877654433211 1223445678999999999999999999999998878
Q ss_pred CCcEEEEEcCCcChHHHHHHHHhcCC--eeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc-
Q 016975 171 AGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS- 247 (379)
Q Consensus 171 ~~~~l~i~G~g~~~~~l~~~~~~~~l--~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~- 247 (379)
++++|+++|+++....+++.++++++ ++.+.|..++..++|+.||++|+||..|++|++++|||+||+|||+|+.|+
T Consensus 219 ~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~~~ 298 (353)
T cd03811 219 PDARLVILGDGPLREELEALAKELGLADRVHFLGFQSNPYPYLKAADLFVLSSRYEGFPNVLLEAMALGTPVVATDCPGP 298 (353)
T ss_pred CCceEEEEcCCccHHHHHHHHHhcCCCccEEEecccCCHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCCCEEEcCCCCh
Confidence 89999999999998888888888776 677889887766999999999999999999999999999999999999955
Q ss_pred ccccccCCCEEEeC--CHHHHH---HHHHHHHhC
Q 016975 248 NDFFKQFPNCRTYD--DRNGFV---EATLKALAE 276 (379)
Q Consensus 248 ~e~i~~~~~g~~~~--~~~~l~---~~i~~~l~~ 276 (379)
.|++.++.+|++++ |+++++ +++..+.++
T Consensus 299 ~e~i~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~ 332 (353)
T cd03811 299 REILEDGENGLLVPVGDEAALAAAALALLDLLLD 332 (353)
T ss_pred HHHhcCCCceEEECCCCHHHHHHHHHHHHhccCC
Confidence 88999999999988 788884 444444444
No 66
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.93 E-value=3e-25 Score=215.62 Aligned_cols=266 Identities=11% Similarity=0.088 Sum_probs=171.7
Q ss_pred CCcEEEEcCCcchhhhhccccccccc--CcEEEEeccChHHHHHHhhcchHHHHHHHHHH----------HHHHHHh--c
Q 016975 29 VADIAVLEEPEHLTWFHHGKRWKTKF--RYVVGIVHTNYLEYVKREKNGRLQAFLLKYAN----------SWLVDIY--C 94 (379)
Q Consensus 29 ~~DvV~~~~p~~~~~~~~~~~~~~~~--~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~--~ 94 (379)
..|+|++|++..+.... ...++. .+++.++|..++.+......+.... +.+.+. .++..+. |
T Consensus 131 ~~d~iwihDyhl~llp~---~lr~~~~~~~i~~f~HipfP~~e~~~~lp~~~~-ll~~~l~~D~igF~t~~~~~~Fl~~~ 206 (460)
T cd03788 131 PGDLVWVHDYHLLLLPQ---MLRERGPDARIGFFLHIPFPSSEIFRCLPWREE-LLRGLLGADLIGFQTERYARNFLSCC 206 (460)
T ss_pred CCCEEEEeChhhhHHHH---HHHhhCCCCeEEEEEeCCCCChHHHhhCCChHH-HHHHHhcCCEEEECCHHHHHHHHHHH
Confidence 57999999985544332 222222 3889999988765543222222111 111111 1111111 2
Q ss_pred ceEEEcChhhhhhh---h--ccceee-cccCCCCccCccccHHH-----hhcCCCCCcceEEEEEecccccCHHHHHHHH
Q 016975 95 HKVIRLSAATQEYA---N--SIICNV-HGVNPKFLEIGKKKKEQ-----QQNGTHAFAKGAYYIGKMVWSKGYKELLELL 163 (379)
Q Consensus 95 d~vi~~S~~~~~~~---~--~~i~~i-~gvd~~~~~~~~~~~~~-----~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~ 163 (379)
+.++..+....... . .++..+ +|||++.|.+....... ......+++++|+++||+.+.||++.+++|+
T Consensus 207 ~~~l~~~~~~~~~i~~~g~~~~i~vip~GID~~~f~~~~~~~~~~~~~~~~~~~~~~~~~il~vgRl~~~Kgi~~ll~A~ 286 (460)
T cd03788 207 SRLLGLEVTDDGGVEYGGRRVRVGAFPIGIDPDAFRKLAASPEVQERAAELRERLGGRKLIVGVDRLDYSKGIPERLLAF 286 (460)
T ss_pred HHHcCCcccCCceEEECCEEEEEEEEeCeEcHHHHHHHhcCchhHHHHHHHHHhcCCCEEEEEecCccccCCHHHHHHHH
Confidence 33333332221100 0 123333 89998888653222111 1122344577999999999999999999999
Q ss_pred HHhHhhcCC----cEEEEEcCC-----cChHHHHH----HHHhcC--------CeeEEe-cCCCCHH--HHHhhcCEEEe
Q 016975 164 DDHQKELAG----LEVDLYGNG-----EDFNQIQE----AAEKLK--------IVVRVY-PGRDHAD--LIFHDYKVFLN 219 (379)
Q Consensus 164 ~~l~~~~~~----~~l~i~G~g-----~~~~~l~~----~~~~~~--------l~v~~~-g~~~~~~--~~~~~~dv~v~ 219 (379)
+.+.+++|+ ++|+++|.+ ++..++++ .+.+.+ ..+.++ |.++..+ .+|+.||+||+
T Consensus 287 ~~ll~~~p~~~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~~v~~~~g~v~~~el~~~y~~aDv~v~ 366 (460)
T cd03788 287 ERLLERYPEWRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTLDWTPVRYLYRSLPREELAALYRAADVALV 366 (460)
T ss_pred HHHHHhChhhcCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCceeEEEEeCCCCHHHHHHHHHhccEEEe
Confidence 999887776 578888643 33333433 333322 135555 6677777 99999999999
Q ss_pred cCCCCcchhHHHHHHHcCCe----EEecCC-CcccccccCCCEEEeC--CHHHHHHHHHHHHhCCCC---CCcH---HHH
Q 016975 220 PSTTDVVCTTTAEALAMGKI----VVCANH-PSNDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA---LPTE---AQR 286 (379)
Q Consensus 220 ps~~E~~~~~~~EAma~G~P----VI~t~~-g~~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~~---~~~~---~~~ 286 (379)
||..||||++++||||||+| ||+|+. |+.+. ..+|++++ |+++++++|.++++++.. .+.. ...
T Consensus 367 pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~---~~~g~lv~p~d~~~la~ai~~~l~~~~~e~~~~~~~~~~~v 443 (460)
T cd03788 367 TPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE---LSGALLVNPYDIDEVADAIHRALTMPLEERRERHRKLREYV 443 (460)
T ss_pred CccccccCcccceeEEEecCCCceEEEeccccchhh---cCCCEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999 999988 55555 35788887 999999999999998754 2222 222
Q ss_pred hcCCHHHHHHHHHHH
Q 016975 287 HQLSWESATERFLQV 301 (379)
Q Consensus 287 ~~~sw~~~~~~~~~~ 301 (379)
.+|+|+..++++++.
T Consensus 444 ~~~~~~~w~~~~l~~ 458 (460)
T cd03788 444 RTHDVQAWANSFLDD 458 (460)
T ss_pred HhCCHHHHHHHHHHh
Confidence 789999999998864
No 67
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.90 E-value=1.2e-23 Score=178.09 Aligned_cols=145 Identities=19% Similarity=0.266 Sum_probs=127.1
Q ss_pred hcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhh-cCCcEEEEEcCCcChHHHHHHHHhcCC--eeEEecCCCCHH--
Q 016975 134 QNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKE-LAGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHAD-- 208 (379)
Q Consensus 134 ~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~-~~~~~l~i~G~g~~~~~l~~~~~~~~l--~v~~~g~~~~~~-- 208 (379)
......+++.|+|+|++.+.||++.+++++..+..+ .+++.++|+|+++....++..++..++ ++.++|.+++.+
T Consensus 8 ~~~~~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~ 87 (172)
T PF00534_consen 8 KLKIPDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGEYKKELKNLIEKLNLKENIIFLGYVPDDELD 87 (172)
T ss_dssp HTTT-TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHCCHHHHHHHHHHHTTCGTTEEEEESHSHHHHH
T ss_pred HcCCCCCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEcccccccccccccccccccccccccccccccccc
Confidence 334456688999999999999999999999999875 789999999988888888888888776 788999998555
Q ss_pred HHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc-ccccccCCCEEEeC--CHHHHHHHHHHHHhCCC
Q 016975 209 LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEP 278 (379)
Q Consensus 209 ~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~ 278 (379)
++|+.||++|+||..|+||++++|||+||+|||+++.|+ .|++.++.+|++++ |+++++++|.+++++++
T Consensus 88 ~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~~~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~~ 160 (172)
T PF00534_consen 88 ELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDIGGNNEIINDGVNGFLFDPNDIEELADAIEKLLNDPE 160 (172)
T ss_dssp HHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESSTHHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHHH
T ss_pred cccccceeccccccccccccccccccccccceeeccccCCceeeccccceEEeCCCCHHHHHHHHHHHHCCHH
Confidence 999999999999999999999999999999999999966 89999999999998 88999999999999873
No 68
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.90 E-value=2e-22 Score=194.53 Aligned_cols=259 Identities=13% Similarity=0.081 Sum_probs=171.1
Q ss_pred CCcEEEEcCCcchhhhhcccccccccC--cEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEEEcChh-hh
Q 016975 29 VADIAVLEEPEHLTWFHHGKRWKTKFR--YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIRLSAA-TQ 105 (379)
Q Consensus 29 ~~DvV~~~~p~~~~~~~~~~~~~~~~~--~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~-~~ 105 (379)
.-|+|++|+...+.... ....... ++..+.|..++........+.... +.+-+. .||.|-.-+.. ..
T Consensus 127 ~~d~vwvhDYhl~l~p~---~lr~~~~~~~igfFlHipfP~~e~f~~lp~r~~-il~gll------~~dligF~t~~~~~ 196 (456)
T TIGR02400 127 PGDIVWVHDYHLMLLPA---MLRELGVQNKIGFFLHIPFPSSEIYRTLPWRRE-LLEGLL------AYDLVGFQTYDDAR 196 (456)
T ss_pred CCCEEEEecchhhHHHH---HHHhhCCCCeEEEEEeCCCCChHHHhhCCcHHH-HHHHHh------cCCEEEECCHHHHH
Confidence 35899999865443332 2222222 677788987765443223332221 111111 13666555532 22
Q ss_pred hhhh-------------------c--cceee-cccCCCCccCccccHH-------HhhcCCCCCcceEEEEEecccccCH
Q 016975 106 EYAN-------------------S--IICNV-HGVNPKFLEIGKKKKE-------QQQNGTHAFAKGAYYIGKMVWSKGY 156 (379)
Q Consensus 106 ~~~~-------------------~--~i~~i-~gvd~~~~~~~~~~~~-------~~~~~~~~~~~~il~vgrl~~~Kg~ 156 (379)
.+.. . ++..+ +|||++.|.+...... .+.. .+++++|+++||+++.||+
T Consensus 197 ~Fl~~~~~~l~~~~~~~~~~~~g~~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~--~~~~~vIl~VgRLd~~KGi 274 (456)
T TIGR02400 197 NFLSAVSRELGLETLPNGVESGGRTVRVGAFPIGIDVDRFAEQAKKPSVQKRIAELRES--LKGRKLIIGVDRLDYSKGL 274 (456)
T ss_pred HHHHHHHHHhCCcccCCceEECCcEEEEEEecCcCCHHHHHHHhcChhHHHHHHHHHHH--cCCCeEEEEccccccccCH
Confidence 2211 1 12223 7999988865322111 1111 1356789999999999999
Q ss_pred HHHHHHHHHhHhhcCC----cEEEEEc-----CCcChHHHHHHHHhc--------CC----eeEEe-cCCCCHH--HHHh
Q 016975 157 KELLELLDDHQKELAG----LEVDLYG-----NGEDFNQIQEAAEKL--------KI----VVRVY-PGRDHAD--LIFH 212 (379)
Q Consensus 157 ~~li~a~~~l~~~~~~----~~l~i~G-----~g~~~~~l~~~~~~~--------~l----~v~~~-g~~~~~~--~~~~ 212 (379)
+.+++|++.+.+++|+ +.|+++| ++++..++++.++++ +. .+.++ +.++.++ .+|+
T Consensus 275 ~~ll~A~~~ll~~~p~~~~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv~~l~~~~~~~el~aly~ 354 (456)
T TIGR02400 275 PERLLAFERFLEEHPEWRGKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTPIRYLNRSYDREELMALYR 354 (456)
T ss_pred HHHHHHHHHHHHhCccccCceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhccCCCCCccEEEEcCCCCHHHHHHHHH
Confidence 9999999999877775 5577764 455556666665543 11 23444 5667777 9999
Q ss_pred hcCEEEecCCCCcchhHHHHHHHcCCe----EEecCC-CcccccccCCCEEEeC--CHHHHHHHHHHHHhCCCCC---Cc
Q 016975 213 DYKVFLNPSTTDVVCTTTAEALAMGKI----VVCANH-PSNDFFKQFPNCRTYD--DRNGFVEATLKALAEEPAL---PT 282 (379)
Q Consensus 213 ~~dv~v~ps~~E~~~~~~~EAma~G~P----VI~t~~-g~~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~~~---~~ 282 (379)
.||+||+||..||||++++||||||+| ||+|+. |+.+.+. +|++++ |+++++++|.++++++... +.
T Consensus 355 aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~~l~---~gllVnP~d~~~lA~aI~~aL~~~~~er~~r~ 431 (456)
T TIGR02400 355 AADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQELN---GALLVNPYDIDGMADAIARALTMPLEEREERH 431 (456)
T ss_pred hCcEEEECccccccCccHHHHHHhcCCCCceEEEeCCCCChHHhC---CcEEECCCCHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999999999 999998 6677664 688887 9999999999999976541 11
Q ss_pred H---HHHhcCCHHHHHHHHHHHH
Q 016975 283 E---AQRHQLSWESATERFLQVA 302 (379)
Q Consensus 283 ~---~~~~~~sw~~~~~~~~~~~ 302 (379)
. +...++|+..-++++++..
T Consensus 432 ~~~~~~v~~~~~~~W~~~~l~~l 454 (456)
T TIGR02400 432 RAMMDKLRKNDVQRWREDFLSDL 454 (456)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHh
Confidence 1 2226799999999988654
No 69
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.89 E-value=3.7e-22 Score=189.88 Aligned_cols=256 Identities=17% Similarity=0.074 Sum_probs=169.8
Q ss_pred CCCCcEEEEcCCcchhhhhcccccccccCcEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEEEcChhhhh
Q 016975 27 DEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIRLSAATQE 106 (379)
Q Consensus 27 ~~~~DvV~~~~p~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~ 106 (379)
+.+..|++.+.|....+.. . ....++|..+++.+..+.. .. ..........+.+ ||.|+++|+..++
T Consensus 100 ~~~~~i~~~~~P~~~~~~~----~-~~~~~~Vyd~~D~~~~~~~---~~---~~~~~~e~~~~~~--ad~vi~~S~~l~~ 166 (373)
T cd04950 100 GFGRPILWYYTPYTLPVAA----L-LQASLVVYDCVDDLSAFPG---GP---PELLEAERRLLKR--ADLVFTTSPSLYE 166 (373)
T ss_pred CCCCcEEEEeCccHHHHHh----h-cCCCeEEEEcccchhccCC---CC---HHHHHHHHHHHHh--CCEEEECCHHHHH
Confidence 5566777778777665552 1 2224788888876654432 11 1111222332222 5999999988776
Q ss_pred hhhc---cceee-cccCCCCccCccccHHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCc
Q 016975 107 YANS---IICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGE 182 (379)
Q Consensus 107 ~~~~---~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~ 182 (379)
.... ++..+ ||+|.+.|.+..............+++.++|+|++.+.++++.+.++.. ..|+++|+++|+++
T Consensus 167 ~~~~~~~~i~~i~ngvd~~~f~~~~~~~~~~~~~~~~~~~~i~y~G~l~~~~d~~ll~~la~----~~p~~~~vliG~~~ 242 (373)
T cd04950 167 AKRRLNPNVVLVPNGVDYEHFAAARDPPPPPADLAALPRPVIGYYGAIAEWLDLELLEALAK----ARPDWSFVLIGPVD 242 (373)
T ss_pred HHhhCCCCEEEcccccCHHHhhcccccCCChhHHhcCCCCEEEEEeccccccCHHHHHHHHH----HCCCCEEEEECCCc
Confidence 5432 34444 8999888865332211001112234679999999999888776555443 36899999999984
Q ss_pred ChHHHHHHHHhcCCeeEEecCCCCHH--HHHhhcCEEEecCCC-----CcchhHHHHHHHcCCeEEecCCCcccccccCC
Q 016975 183 DFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPSTT-----DVVCTTTAEALAMGKIVVCANHPSNDFFKQFP 255 (379)
Q Consensus 183 ~~~~l~~~~~~~~l~v~~~g~~~~~~--~~~~~~dv~v~ps~~-----E~~~~~~~EAma~G~PVI~t~~g~~e~i~~~~ 255 (379)
........ .. ..++.++|.+++.+ .+|+.+|++++|+.. +++|++++||||||+|||+|+.+. ......
T Consensus 243 ~~~~~~~~-~~-~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~~~--~~~~~~ 318 (373)
T cd04950 243 VSIDPSAL-LR-LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPLPE--VRRYED 318 (373)
T ss_pred CccChhHh-cc-CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCcHH--HHhhcC
Confidence 32222221 11 23899999999888 999999999999863 467999999999999999998743 333333
Q ss_pred CEEEeC-CHHHHHHHHHHHHhCCCC-CCcHH--HHhcCCHHHHHHHHHHHHh
Q 016975 256 NCRTYD-DRNGFVEATLKALAEEPA-LPTEA--QRHQLSWESATERFLQVAE 303 (379)
Q Consensus 256 ~g~~~~-~~~~l~~~i~~~l~~~~~-~~~~~--~~~~~sw~~~~~~~~~~~~ 303 (379)
.+++.. |+++++++|.+++.++.. ..... ..+.+||+..++++.+..+
T Consensus 319 ~~~~~~~d~~~~~~ai~~~l~~~~~~~~~~~~~~~~~~sW~~~a~~~~~~l~ 370 (373)
T cd04950 319 EVVLIADDPEEFVAAIEKALLEDGPARERRRLRLAAQNSWDARAAEMLEALQ 370 (373)
T ss_pred cEEEeCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 455555 899999999998765543 21121 3588999999999986554
No 70
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.89 E-value=7.8e-22 Score=189.47 Aligned_cols=98 Identities=12% Similarity=0.079 Sum_probs=76.9
Q ss_pred HHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc-----ccccccC-CCE-EEe-------C-CHHHHHHHHHHH
Q 016975 209 LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQF-PNC-RTY-------D-DRNGFVEATLKA 273 (379)
Q Consensus 209 ~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-----~e~i~~~-~~g-~~~-------~-~~~~l~~~i~~~ 273 (379)
++|+.||+||+||.+|+||++++||||||+|||+|+.++ .|.+.++ ..| ++. + +.++++++|.++
T Consensus 470 E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~E~v~~~~~~gi~V~~r~~~~~~e~v~~La~~m~~~ 549 (590)
T cd03793 470 EFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFMEEHIEDPESYGIYIVDRRFKSPDESVQQLTQYMYEF 549 (590)
T ss_pred HHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhHHHhccCCCceEEEecCCccchHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999954 3555544 234 555 2 577888888888
Q ss_pred HhCCCC-CCc---H--HHHhcCCHHHHHHHHHHHHhccc
Q 016975 274 LAEEPA-LPT---E--AQRHQLSWESATERFLQVAELDQ 306 (379)
Q Consensus 274 l~~~~~-~~~---~--~~~~~~sw~~~~~~~~~~~~~~~ 306 (379)
++.+.. .+. . ...+.|+|++.+..|.++|+++.
T Consensus 550 ~~~~~r~~~~~r~~~~r~s~~f~W~~~~~~Y~~A~~~Al 588 (590)
T cd03793 550 CQLSRRQRIIQRNRTERLSDLLDWRNLGRYYRKARQLAL 588 (590)
T ss_pred hCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 754322 111 1 33388999999999999999875
No 71
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.88 E-value=8.3e-22 Score=190.84 Aligned_cols=271 Identities=14% Similarity=0.057 Sum_probs=167.2
Q ss_pred cccccCCCCCCcEEEEcCCcchhhhhccccccccc-CcEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEE
Q 016975 20 DISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKF-RYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVI 98 (379)
Q Consensus 20 ~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~-~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 98 (379)
.+.++++..+||+||++.... |.. .....++. .|++.+.|.......... .++....+..... +|.|+
T Consensus 115 ~~~~~l~~~~Pd~v~~~~~~~--~~~-~l~~~~~~~ip~vl~~~~~~~~s~~~~------~~~~~~~r~~~~~--~d~ii 183 (425)
T PRK05749 115 AVRRFLRFWRPKLVIIMETEL--WPN-LIAELKRRGIPLVLANARLSERSFKRY------QKFKRFYRLLFKN--IDLVL 183 (425)
T ss_pred HHHHHHHhhCCCEEEEEecch--hHH-HHHHHHHCCCCEEEEeccCChhhHHHH------HHHHHHHHHHHHh--CCEEE
Confidence 456778889999999875432 221 11122222 377766554322222111 1111222222222 59999
Q ss_pred EcChhhhhhhhc-c----ceeecccCCCCccCccc---cHHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhhc
Q 016975 99 RLSAATQEYANS-I----ICNVHGVNPKFLEIGKK---KKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKEL 170 (379)
Q Consensus 99 ~~S~~~~~~~~~-~----i~~i~gvd~~~~~~~~~---~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~ 170 (379)
++|+..++...+ + +.++.+++.+.+.+... ....+.... +++++++++|+. .|+.+.+++|+.++.++.
T Consensus 184 ~~S~~~~~~l~~~g~~~~i~vi~n~~~d~~~~~~~~~~~~~~r~~~~-~~~~vil~~~~~--~~~~~~ll~A~~~l~~~~ 260 (425)
T PRK05749 184 AQSEEDAERFLALGAKNEVTVTGNLKFDIEVPPELAARAATLRRQLA-PNRPVWIAASTH--EGEEELVLDAHRALLKQF 260 (425)
T ss_pred ECCHHHHHHHHHcCCCCCcEecccccccCCCChhhHHHHHHHHHHhc-CCCcEEEEeCCC--chHHHHHHHHHHHHHHhC
Confidence 999887754432 2 33333333322221111 111111111 345678888763 688999999999998878
Q ss_pred CCcEEEEEcCCcCh-HHHHHHHHhcCCe-eEEecC--------------CCCHHHHHhhcCEEE-ecCCCCcchhHHHHH
Q 016975 171 AGLEVDLYGNGEDF-NQIQEAAEKLKIV-VRVYPG--------------RDHADLIFHDYKVFL-NPSTTDVVCTTTAEA 233 (379)
Q Consensus 171 ~~~~l~i~G~g~~~-~~l~~~~~~~~l~-v~~~g~--------------~~~~~~~~~~~dv~v-~ps~~E~~~~~~~EA 233 (379)
|+++|+|+|+|+.. +++++.+++.++. +.+.++ ..+...+|+.||+++ .+|..|++|++++||
T Consensus 261 ~~~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~~v~~S~~e~~g~~~lEA 340 (425)
T PRK05749 261 PNLLLILVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAIADIAFVGGSLVKRGGHNPLEP 340 (425)
T ss_pred CCcEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHhCCEEEECCCcCCCCCCCHHHH
Confidence 99999999999986 7899999888874 333332 112229999999955 478889999999999
Q ss_pred HHcCCeEEecCC-Cc-ccccccC-CCEEEe--CCHHHHHHHHHHHHhCCCC--CCcHHHHhcC-CHHHHHHHHHHHHhc
Q 016975 234 LAMGKIVVCANH-PS-NDFFKQF-PNCRTY--DDRNGFVEATLKALAEEPA--LPTEAQRHQL-SWESATERFLQVAEL 304 (379)
Q Consensus 234 ma~G~PVI~t~~-g~-~e~i~~~-~~g~~~--~~~~~l~~~i~~~l~~~~~--~~~~~~~~~~-sw~~~~~~~~~~~~~ 304 (379)
||||+|||+++. +. .+.+... .+|.++ .|+++++++|.++++++.. .|++++++.. +....++++++.+..
T Consensus 341 ma~G~PVI~g~~~~~~~e~~~~~~~~g~~~~~~d~~~La~~l~~ll~~~~~~~~m~~~a~~~~~~~~~~~~~~~~~l~~ 419 (425)
T PRK05749 341 AAFGVPVISGPHTFNFKEIFERLLQAGAAIQVEDAEDLAKAVTYLLTDPDARQAYGEAGVAFLKQNQGALQRTLQLLEP 419 (425)
T ss_pred HHhCCCEEECCCccCHHHHHHHHHHCCCeEEECCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 999999999886 44 4444331 234433 4999999999999987755 5666554222 113566777766653
No 72
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.87 E-value=1.1e-21 Score=200.68 Aligned_cols=272 Identities=11% Similarity=0.051 Sum_probs=176.4
Q ss_pred CcEEEEcCCcchhhhhcccccccccC--cEEEEeccChHHHHHHhhcchHHHHHHHHH---------HHHHHHHh--cce
Q 016975 30 ADIAVLEEPEHLTWFHHGKRWKTKFR--YVVGIVHTNYLEYVKREKNGRLQAFLLKYA---------NSWLVDIY--CHK 96 (379)
Q Consensus 30 ~DvV~~~~p~~~~~~~~~~~~~~~~~--~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~--~d~ 96 (379)
-|+|.+|+...+.... ...++.. ++..+.|..++.+......+.....+...+ ..+...+. |+.
T Consensus 148 ~d~vWvhDYhL~llp~---~lR~~~~~~~igfFlHiPFPs~e~fr~lp~r~~il~gll~aDligF~t~~y~r~Fl~~~~r 224 (797)
T PLN03063 148 GDVVWCHDYHLMFLPQ---YLKEYNNKMKVGWFLHTPFPSSEIYKTLPSRSELLRAVLTADLIGFHTYDFARHFLSACTR 224 (797)
T ss_pred CCEEEEecchhhhHHH---HHHHhCCCCcEEEEecCCCCCHHHHhhCCCHHHHHHHHhcCCEEEeCCHHHHHHHHHHHHH
Confidence 4899999854443332 2222223 888899998876654333343332222222 11111111 344
Q ss_pred EEEcChhhhhhhh----ccceee-cccCCCCccCccccH---H-H-hhcCCCCCcceEEEEEecccccCHHHHHHHHHHh
Q 016975 97 VIRLSAATQEYAN----SIICNV-HGVNPKFLEIGKKKK---E-Q-QQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDH 166 (379)
Q Consensus 97 vi~~S~~~~~~~~----~~i~~i-~gvd~~~~~~~~~~~---~-~-~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l 166 (379)
++.++.....+.. .++..+ +|||++.|.+..... . . .......++++|+++||+.+.||+..+++|++.+
T Consensus 225 ~l~~~~~~~~i~~~gr~~~I~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~lIl~VgRLd~~KGi~~lL~Afe~l 304 (797)
T PLN03063 225 ILGVEGTHEGVVDQGKVTRVAVFPIGIDPERFINTCELPEVKQHMKELKRFFAGRKVILGVDRLDMIKGIPQKYLAFEKF 304 (797)
T ss_pred HhCccccCCceEECCeEEEEEEEecccCHHHHHHHhcChhHHHHHHHHHHhcCCCeEEEEecccccccCHHHHHHHHHHH
Confidence 4444422111111 123333 799988775432211 0 0 1011123467899999999999999999999999
Q ss_pred HhhcCCcE----EEEE-----cCCcChHHHHHHHHhcC--Ce----------eEEe-cCCCCHH--HHHhhcCEEEecCC
Q 016975 167 QKELAGLE----VDLY-----GNGEDFNQIQEAAEKLK--IV----------VRVY-PGRDHAD--LIFHDYKVFLNPST 222 (379)
Q Consensus 167 ~~~~~~~~----l~i~-----G~g~~~~~l~~~~~~~~--l~----------v~~~-g~~~~~~--~~~~~~dv~v~ps~ 222 (379)
.+.+|+++ |+.+ |++++.+++++.++++. ++ +.++ +.++..+ .+|+.||+||+||.
T Consensus 305 L~~~P~~~~kvvLvqia~psr~~~~~y~~l~~~v~~l~g~In~~~g~~~~~pv~~l~~~v~~~el~aly~~ADvfvvtSl 384 (797)
T PLN03063 305 LEENPEWRDKVMLVQIAVPTRNDVPEYQKLKSQVHELVGRINGRFGSVSSVPIHHLDCSVDFNYLCALYAITDVMLVTSL 384 (797)
T ss_pred HHhCccccCcEEEEEEecCCCCchHHHHHHHHHHHHHHHHhhcccccCCCceeEEecCCCCHHHHHHHHHhCCEEEeCcc
Confidence 88888753 3333 34555666766666553 22 2233 4567777 99999999999999
Q ss_pred CCcchhHHHHHHHcCCe----EEecCC-CcccccccCCCEEEeC--CHHHHHHHHHHHHhCCCC-C---Cc--HHHHhcC
Q 016975 223 TDVVCTTTAEALAMGKI----VVCANH-PSNDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA-L---PT--EAQRHQL 289 (379)
Q Consensus 223 ~E~~~~~~~EAma~G~P----VI~t~~-g~~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~~-~---~~--~~~~~~~ 289 (379)
.||+|++++||||||+| +|.|+. |+.+.+ +.+|++++ |+++++++|.++++.++. + +. .+....+
T Consensus 385 rEGmnLv~lEamA~g~p~~gvlVlSe~~G~~~~l--~~~allVnP~D~~~lA~AI~~aL~m~~~er~~r~~~~~~~v~~~ 462 (797)
T PLN03063 385 RDGMNLVSYEFVACQKAKKGVLVLSEFAGAGQSL--GAGALLVNPWNITEVSSAIKEALNMSDEERETRHRHNFQYVKTH 462 (797)
T ss_pred ccccCcchhhHheeecCCCCCEEeeCCcCchhhh--cCCeEEECCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhhC
Confidence 99999999999999999 999999 667765 34688887 999999999999996543 1 11 1233889
Q ss_pred CHHHHHHHHHHHHhccc
Q 016975 290 SWESATERFLQVAELDQ 306 (379)
Q Consensus 290 sw~~~~~~~~~~~~~~~ 306 (379)
+|..-++.+++.++.+.
T Consensus 463 ~~~~Wa~~fl~~l~~~~ 479 (797)
T PLN03063 463 SAQKWADDFMSELNDII 479 (797)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999887654
No 73
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.84 E-value=2.1e-20 Score=178.39 Aligned_cols=259 Identities=12% Similarity=0.026 Sum_probs=167.5
Q ss_pred ccccccCCCCCCcEEEEcCCcchhhh-hcccccc--cccC-cEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhc
Q 016975 19 GDISEVIPDEVADIAVLEEPEHLTWF-HHGKRWK--TKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYC 94 (379)
Q Consensus 19 ~~l~~~l~~~~~DvV~~~~p~~~~~~-~~~~~~~--~~~~-~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (379)
..+.++|++++||+||++.|...... .....+. ...+ |++.++++.+.. + ..|+ ...+
T Consensus 90 ~~l~~~i~~~~pDvIi~thp~~~~~~~~~l~~~~~~~~~~~p~~~~~tD~~~~------~-----------~~w~-~~~~ 151 (382)
T PLN02605 90 REVAKGLMKYKPDIIVSVHPLMQHVPLRVLRWQGKELGKKIPFTTVVTDLGTC------H-----------PTWF-HKGV 151 (382)
T ss_pred HHHHHHHHhcCcCEEEEeCcCcccCHHHHHHHHhhccCCCCCEEEEECCCCCc------C-----------cccc-cCCC
Confidence 35667888999999999766522110 0011121 1123 777666443210 0 0111 1126
Q ss_pred ceEEEcChhhhhhhh------ccceee-cccCCCCccCcc-ccHHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHh
Q 016975 95 HKVIRLSAATQEYAN------SIICNV-HGVNPKFLEIGK-KKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDH 166 (379)
Q Consensus 95 d~vi~~S~~~~~~~~------~~i~~i-~gvd~~~~~~~~-~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l 166 (379)
|.++++|+.+++... +++..+ ++++.+++.+.. ....+.+.+.++++++|+++|+....|++..+++++..+
T Consensus 152 d~~~~~s~~~~~~l~~~g~~~~ki~v~g~~v~~~f~~~~~~~~~~r~~~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~ 231 (382)
T PLN02605 152 TRCFCPSEEVAKRALKRGLEPSQIRVYGLPIRPSFARAVRPKDELRRELGMDEDLPAVLLMGGGEGMGPLEETARALGDS 231 (382)
T ss_pred CEEEECCHHHHHHHHHcCCCHHHEEEECcccCHhhccCCCCHHHHHHHcCCCCCCcEEEEECCCcccccHHHHHHHHHHh
Confidence 999999988764332 233333 566655444322 222334455556788999999998899999999998765
Q ss_pred Hh----hcCCcE-EEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeE
Q 016975 167 QK----ELAGLE-VDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIV 240 (379)
Q Consensus 167 ~~----~~~~~~-l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PV 240 (379)
.. ..++.+ ++++|+++. .+.+++. ..+.+++|+|++++..++|+.||++|.++ .|++++||||||+||
T Consensus 232 ~~~~~~~~~~~~~~vi~G~~~~~~~~L~~~--~~~~~v~~~G~~~~~~~l~~aaDv~V~~~----g~~ti~EAma~g~Pv 305 (382)
T PLN02605 232 LYDKNLGKPIGQVVVICGRNKKLQSKLESR--DWKIPVKVRGFVTNMEEWMGACDCIITKA----GPGTIAEALIRGLPI 305 (382)
T ss_pred hccccccCCCceEEEEECCCHHHHHHHHhh--cccCCeEEEeccccHHHHHHhCCEEEECC----CcchHHHHHHcCCCE
Confidence 31 134554 677887643 3445443 22346889999987779999999999865 478999999999999
Q ss_pred EecCC------CcccccccCCCEEEeCCHHHHHHHHHHHHhC-CCC--CCcHHHH---hcCCHHHHHHHHHHH
Q 016975 241 VCANH------PSNDFFKQFPNCRTYDDRNGFVEATLKALAE-EPA--LPTEAQR---HQLSWESATERFLQV 301 (379)
Q Consensus 241 I~t~~------g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~~-~~~--~~~~~~~---~~~sw~~~~~~~~~~ 301 (379)
|+++. |..+.+.+...|+...|+++++++|.+++.+ ++. .|+.+++ ...+++.+++.+.+.
T Consensus 306 I~~~~~pgqe~gn~~~i~~~g~g~~~~~~~~la~~i~~ll~~~~~~~~~m~~~~~~~~~~~a~~~i~~~l~~~ 378 (382)
T PLN02605 306 ILNGYIPGQEEGNVPYVVDNGFGAFSESPKEIARIVAEWFGDKSDELEAMSENALKLARPEAVFDIVHDLHEL 378 (382)
T ss_pred EEecCCCccchhhHHHHHhCCceeecCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 99995 3344566666787778999999999999987 433 4555444 445566666666544
No 74
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.82 E-value=1.7e-19 Score=172.27 Aligned_cols=257 Identities=14% Similarity=0.103 Sum_probs=167.8
Q ss_pred ccccccCCCCCCcEEEEcCCcchhhhhcccccccccC-cEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceE
Q 016975 19 GDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKV 97 (379)
Q Consensus 19 ~~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~-~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 97 (379)
..+.+++++.+||+||++.|...... + ......+ |++..+++... . ..|+ ...+|.+
T Consensus 94 ~~l~~~l~~~~pD~Vi~~~~~~~~~~--~-~~~~~~~ip~~~~~td~~~-------~-----------~~~~-~~~ad~i 151 (380)
T PRK13609 94 KRLKLLLQAEKPDIVINTFPIIAVPE--L-KKQTGISIPTYNVLTDFCL-------H-----------KIWV-HREVDRY 151 (380)
T ss_pred HHHHHHHHHhCcCEEEEcChHHHHHH--H-HHhcCCCCCeEEEeCCCCC-------C-----------cccc-cCCCCEE
Confidence 46778888999999999877543222 1 1222223 76654433210 0 0011 1135999
Q ss_pred EEcChhhhhhhhc------cceeecccCCC-CccC-ccccHHHhhcCCCCCcc-eEEEEEecccccCHHHHHHHHHHhHh
Q 016975 98 IRLSAATQEYANS------IICNVHGVNPK-FLEI-GKKKKEQQQNGTHAFAK-GAYYIGKMVWSKGYKELLELLDDHQK 168 (379)
Q Consensus 98 i~~S~~~~~~~~~------~i~~i~gvd~~-~~~~-~~~~~~~~~~~~~~~~~-~il~vgrl~~~Kg~~~li~a~~~l~~ 168 (379)
+++|+.+.+...+ ++.. .|++.. .|.. ......+.+.+..++++ ++++.|+....||+..+++++.+
T Consensus 152 ~~~s~~~~~~l~~~gi~~~ki~v-~G~p~~~~f~~~~~~~~~~~~~~l~~~~~~il~~~G~~~~~k~~~~li~~l~~--- 227 (380)
T PRK13609 152 FVATDHVKKVLVDIGVPPEQVVE-TGIPIRSSFELKINPDIIYNKYQLCPNKKILLIMAGAHGVLGNVKELCQSLMS--- 227 (380)
T ss_pred EECCHHHHHHHHHcCCChhHEEE-ECcccChHHcCcCCHHHHHHHcCCCCCCcEEEEEcCCCCCCcCHHHHHHHHhh---
Confidence 9999887754432 2222 355432 2322 11222223333334444 45556888888999999998753
Q ss_pred hcCCcEEEEEc-CC-cChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCC-
Q 016975 169 ELAGLEVDLYG-NG-EDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH- 245 (379)
Q Consensus 169 ~~~~~~l~i~G-~g-~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~- 245 (379)
.++++++++| .+ +..+.+++.+++.+.++.|+|.+++..++|+.||++|. ++.|++++|||+||+|||+++.
T Consensus 228 -~~~~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~aD~~v~----~~gg~t~~EA~a~g~PvI~~~~~ 302 (380)
T PRK13609 228 -VPDLQVVVVCGKNEALKQSLEDLQETNPDALKVFGYVENIDELFRVTSCMIT----KPGGITLSEAAALGVPVILYKPV 302 (380)
T ss_pred -CCCcEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEechhhHHHHHHhccEEEe----CCCchHHHHHHHhCCCEEECCCC
Confidence 3678888764 33 34577777777666678999999876699999999984 4568999999999999999874
Q ss_pred Ccc-----cccccCCCEEEeCCHHHHHHHHHHHHhCCCC--CCcHHHH---hcCCHHHHHHHHHHHHhccc
Q 016975 246 PSN-----DFFKQFPNCRTYDDRNGFVEATLKALAEEPA--LPTEAQR---HQLSWESATERFLQVAELDQ 306 (379)
Q Consensus 246 g~~-----e~i~~~~~g~~~~~~~~l~~~i~~~l~~~~~--~~~~~~~---~~~sw~~~~~~~~~~~~~~~ 306 (379)
++. +.+.+...++...|+++++++|.++++++.. .|+.+.+ ..++++.+++.+++.+....
T Consensus 303 ~g~~~~n~~~~~~~G~~~~~~~~~~l~~~i~~ll~~~~~~~~m~~~~~~~~~~~s~~~i~~~i~~~~~~~~ 373 (380)
T PRK13609 303 PGQEKENAMYFERKGAAVVIRDDEEVFAKTEALLQDDMKLLQMKEAMKSLYLPEPADHIVDDILAENHVEP 373 (380)
T ss_pred CCcchHHHHHHHhCCcEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHhhhhhh
Confidence 542 2344334455556999999999999988654 4554433 56899999999999887644
No 75
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.82 E-value=9.8e-20 Score=186.41 Aligned_cols=188 Identities=12% Similarity=0.147 Sum_probs=137.9
Q ss_pred cccCCCCccCccccHH---H-h-hcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhhcCC----cEEEEEcC----C-
Q 016975 116 HGVNPKFLEIGKKKKE---Q-Q-QNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAG----LEVDLYGN----G- 181 (379)
Q Consensus 116 ~gvd~~~~~~~~~~~~---~-~-~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~----~~l~i~G~----g- 181 (379)
+|||++.|.+...... . . -....+++++|+++||+.+.||+..+++|++.+.+.+|+ ++|+++|. +
T Consensus 235 ~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~~il~VgRl~~~Kgi~~~l~A~~~ll~~~p~~~~~v~lv~v~~~sr~~~ 314 (726)
T PRK14501 235 MGIDYDKFHNSAQDPEVQEEIRRLRQDLRGRKIILSIDRLDYTKGIPRRLLAFERFLEKNPEWRGKVRLVQVAVPSRTGV 314 (726)
T ss_pred CeEcHHHHHHHhcCchHHHHHHHHHHHcCCCEEEEEecCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcch
Confidence 7999988865332111 0 0 011234567999999999999999999999999887775 68888873 3
Q ss_pred cChHHHHHHHHhc----C--------CeeE-EecCCCCHH--HHHhhcCEEEecCCCCcchhHHHHHHHc-----CCeEE
Q 016975 182 EDFNQIQEAAEKL----K--------IVVR-VYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAM-----GKIVV 241 (379)
Q Consensus 182 ~~~~~l~~~~~~~----~--------l~v~-~~g~~~~~~--~~~~~~dv~v~ps~~E~~~~~~~EAma~-----G~PVI 241 (379)
++..++++.+.++ + ..+. +.|.++.++ .+|+.||+|++||..||+|++++||||| |.||+
T Consensus 315 ~~~~~l~~~~~~~v~~in~~~~~~~~~pv~~~~~~~~~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vl 394 (726)
T PRK14501 315 PQYQEMKREIDELVGRINGEFGTVDWTPIHYFYRSLPFEELVALYRAADVALVTPLRDGMNLVAKEYVASRTDGDGVLIL 394 (726)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCcceEEEEeCCCCHHHHHHHHHhccEEEecccccccCcccceEEEEcCCCCceEEE
Confidence 3344454444332 1 1233 447788888 9999999999999999999999999999 45666
Q ss_pred ecCCCcccccccCCCEEEeC--CHHHHHHHHHHHHhCCCC----CCcH--HHHhcCCHHHHHHHHHHHHhccc
Q 016975 242 CANHPSNDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA----LPTE--AQRHQLSWESATERFLQVAELDQ 306 (379)
Q Consensus 242 ~t~~g~~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~~----~~~~--~~~~~~sw~~~~~~~~~~~~~~~ 306 (379)
+...|+.+.+. .|++++ |+++++++|.++++++.. ++.. +....|||+..++++++.|+.+.
T Consensus 395 s~~~G~~~~l~---~~llv~P~d~~~la~ai~~~l~~~~~e~~~r~~~~~~~v~~~~~~~w~~~~l~~l~~~~ 464 (726)
T PRK14501 395 SEMAGAAAELA---EALLVNPNDIEGIAAAIKRALEMPEEEQRERMQAMQERLRRYDVHKWASDFLDELREAA 464 (726)
T ss_pred ecccchhHHhC---cCeEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 66667755443 378877 999999999999987643 1211 22378999999999999998764
No 76
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.82 E-value=2e-19 Score=169.62 Aligned_cols=237 Identities=16% Similarity=0.147 Sum_probs=159.3
Q ss_pred cccccCCCCCCcEEEEcCCcchhhhhcccccccccC-cEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEE
Q 016975 20 DISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVI 98 (379)
Q Consensus 20 ~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~-~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 98 (379)
.+.+++++.+||+||++.+.. .+. +....+..+ |++...|+.+.. .. .+++ ...+|.++
T Consensus 80 ~~~~~i~~~~pDvI~~~~~~~-~~~--~~~~a~~~~~p~v~~~~~~~~~------------~~----~~~~-~~~~~~vi 139 (350)
T cd03785 80 QARKILKKFKPDVVVGFGGYV-SGP--VGLAAKLLGIPLVIHEQNAVPG------------LA----NRLL-ARFADRVA 139 (350)
T ss_pred HHHHHHHhcCCCEEEECCCCc-chH--HHHHHHHhCCCEEEEcCCCCcc------------HH----HHHH-HHhhCEEE
Confidence 456777888999999987543 222 112222323 776544443211 11 1221 12259999
Q ss_pred EcChhhhhh-hhccceee-cccCCCCccCccccHHHhhcCCCCCcceEEEEEecccccCHHH-HHHHHHHhHhhcCCcE-
Q 016975 99 RLSAATQEY-ANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKE-LLELLDDHQKELAGLE- 174 (379)
Q Consensus 99 ~~S~~~~~~-~~~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~-li~a~~~l~~~~~~~~- 174 (379)
++|+...+. ...++..+ ||+|.+.+.+... +......++++.++++|+....|+... +++++..+.+ ++++
T Consensus 140 ~~s~~~~~~~~~~~~~~i~n~v~~~~~~~~~~---~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~--~~~~~ 214 (350)
T cd03785 140 LSFPETAKYFPKDKAVVTGNPVREEILALDRE---RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLR--KRLQV 214 (350)
T ss_pred EcchhhhhcCCCCcEEEECCCCchHHhhhhhh---HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhc--cCeEE
Confidence 999887764 34455555 8998776654321 223334455667888887666777755 4588887763 3555
Q ss_pred EEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc-------
Q 016975 175 VDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS------- 247 (379)
Q Consensus 175 l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~------- 247 (379)
++++|+| +.+++++.+++++.++.+.|.+++..++|+.||++|.+|- +++++|||+||+|||+++.++
T Consensus 215 ~~i~G~g-~~~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad~~v~~sg----~~t~~Eam~~G~Pvv~~~~~~~~~~~~~ 289 (350)
T cd03785 215 IHQTGKG-DLEEVKKAYEELGVNYEVFPFIDDMAAAYAAADLVISRAG----ASTVAELAALGLPAILIPLPYAADDHQT 289 (350)
T ss_pred EEEcCCc-cHHHHHHHHhccCCCeEEeehhhhHHHHHHhcCEEEECCC----HhHHHHHHHhCCCEEEeecCCCCCCcHH
Confidence 4577888 6677888777665588999998666699999999998762 689999999999999987632
Q ss_pred --ccccccCCCEEEeC----CHHHHHHHHHHHHhCCCC--CCcHHHH
Q 016975 248 --NDFFKQFPNCRTYD----DRNGFVEATLKALAEEPA--LPTEAQR 286 (379)
Q Consensus 248 --~e~i~~~~~g~~~~----~~~~l~~~i~~~l~~~~~--~~~~~~~ 286 (379)
.+.+.+..+|++++ |+++++++|..++++++. .++..++
T Consensus 290 ~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~ 336 (350)
T cd03785 290 ANARALVKAGAAVLIPQEELTPERLAAALLELLSDPERLKAMAEAAR 336 (350)
T ss_pred HhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 35677777898877 699999999999986543 4444443
No 77
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.82 E-value=5.2e-19 Score=155.45 Aligned_cols=181 Identities=16% Similarity=0.125 Sum_probs=132.7
Q ss_pred ccccCCCCCCcEEEEcCCcchhhhhcccccccccCcEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEEEc
Q 016975 21 ISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIRL 100 (379)
Q Consensus 21 l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~ 100 (379)
+.+.+.+.+||+||++.+....+.. .........|++...|+.++........ ....... ..++..
T Consensus 43 ~~~~~~~~~~D~i~~~~~~~~~~~~-~~~~~~~~~~~i~~~h~~~~~~~~~~~~--------~~~~~~~--~~~~~~--- 108 (229)
T cd01635 43 LLRILRGFKPDVVHAHGYYPAPLAL-LLAARLLGIPLVLTVHGVNRSLLEGVPL--------SLLALSI--GLADKV--- 108 (229)
T ss_pred HHHHHhhcCCCEEEEcCCCcHHHHH-HHHHhhCCCCEEEEEcCccHhhcccCcH--------HHHHHHH--hhcceE---
Confidence 4455557799999999877665542 0112222239999999987765531110 0011100 001111
Q ss_pred ChhhhhhhhccceeecccCCCCccCccccHHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcC
Q 016975 101 SAATQEYANSIICNVHGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGN 180 (379)
Q Consensus 101 S~~~~~~~~~~i~~i~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~ 180 (379)
|+|++.+.||++.+++++..+.++.++++++++|.
T Consensus 109 ---------------------------------------------~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~i~G~ 143 (229)
T cd01635 109 ---------------------------------------------FVGRLAPEKGLDDLIEAFALLKERGPDLKLVIAGD 143 (229)
T ss_pred ---------------------------------------------EEEeecccCCHHHHHHHHHHHHHhCCCeEEEEEeC
Confidence 99999999999999999999998889999999999
Q ss_pred CcChHHHHHHHHhcCC--eeEEecCCCCHH---HHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc-ccccccC
Q 016975 181 GEDFNQIQEAAEKLKI--VVRVYPGRDHAD---LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQF 254 (379)
Q Consensus 181 g~~~~~l~~~~~~~~l--~v~~~g~~~~~~---~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-~e~i~~~ 254 (379)
+++....+....+.+. ++.+.|.++..+ .+++.||++++||..|++|++++|||+||+|||+|+.++ .|++.++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~di~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~~e~i~~~ 223 (229)
T cd01635 144 GPEREYLEELLAALLLLDRVIFLGGLDPEELLALLLAAADVFVLPSLREGFGLVVLEAMACGLPVIATDVGGPPEIVEDG 223 (229)
T ss_pred CCChHHHHHHHHhcCCcccEEEeCCCCcHHHHHHHhhcCCEEEecccccCcChHHHHHHhCCCCEEEcCCCCcceEEECC
Confidence 9887766654444443 788889874444 666669999999999999999999999999999999955 8888888
Q ss_pred CCEEEe
Q 016975 255 PNCRTY 260 (379)
Q Consensus 255 ~~g~~~ 260 (379)
.+|+++
T Consensus 224 ~~g~~~ 229 (229)
T cd01635 224 LTGLLV 229 (229)
T ss_pred CceEEC
Confidence 899764
No 78
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=99.82 E-value=2.1e-18 Score=165.19 Aligned_cols=165 Identities=19% Similarity=0.207 Sum_probs=135.1
Q ss_pred CcceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcC--hHHHHHHHHhcCCeeEEecCCCCHH--HHHhhcC
Q 016975 140 FAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED--FNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYK 215 (379)
Q Consensus 140 ~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~l~v~~~g~~~~~~--~~~~~~d 215 (379)
+.+.+.++||+..+||++.+++++..+.+.. +++++.|.|+. .+.+..+++.+..++.+..+.+..- .+|..+|
T Consensus 293 ~~pl~~~vsRl~~QKG~dl~~~~i~~~l~~~--~~~vilG~gd~~le~~~~~la~~~~~~~~~~i~~~~~la~~i~agaD 370 (487)
T COG0297 293 PGPLFGFVSRLTAQKGLDLLLEAIDELLEQG--WQLVLLGTGDPELEEALRALASRHPGRVLVVIGYDEPLAHLIYAGAD 370 (487)
T ss_pred CCcEEEEeeccccccchhHHHHHHHHHHHhC--ceEEEEecCcHHHHHHHHHHHHhcCceEEEEeeecHHHHHHHHhcCC
Confidence 5689999999999999999999999998874 99999999833 4557777777776666665555444 9999999
Q ss_pred EEEecCCCCcchhHHHHHHHcCCeEEecCCCc-cccccc--------CCCEEEeC--CHHHHHHHHHHHHhCCCC-CC--
Q 016975 216 VFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQ--------FPNCRTYD--DRNGFVEATLKALAEEPA-LP-- 281 (379)
Q Consensus 216 v~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-~e~i~~--------~~~g~~~~--~~~~l~~~i~~~l~~~~~-~~-- 281 (379)
++++||++|++|++=++||+.|+++|+..+|+ .+.+.+ ..+|+++. |+++++.+|.+++.--.. ++
T Consensus 371 ~~lmPSrfEPcGL~ql~amryGtvpIv~~tGGLadTV~~~~~~~~~~~gtGf~f~~~~~~~l~~al~rA~~~y~~~~~~w 450 (487)
T COG0297 371 VILMPSRFEPCGLTQLYAMRYGTLPIVRETGGLADTVVDRNEWLIQGVGTGFLFLQTNPDHLANALRRALVLYRAPPLLW 450 (487)
T ss_pred EEEeCCcCcCCcHHHHHHHHcCCcceEcccCCccceecCccchhccCceeEEEEecCCHHHHHHHHHHHHHHhhCCHHHH
Confidence 99999999999999999999999999999976 777764 47888887 999999999988763222 11
Q ss_pred cH----HHHhcCCHHHHHHHHHHHHhccc
Q 016975 282 TE----AQRHQLSWESATERFLQVAELDQ 306 (379)
Q Consensus 282 ~~----~~~~~~sw~~~~~~~~~~~~~~~ 306 (379)
.. .....|+|+..+++|.+.|+...
T Consensus 451 ~~~~~~~m~~d~sw~~sa~~y~~lY~~~~ 479 (487)
T COG0297 451 RKVQPNAMGADFSWDLSAKEYVELYKPLL 479 (487)
T ss_pred HHHHHhhcccccCchhHHHHHHHHHHHHh
Confidence 11 11269999999999999999654
No 79
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.81 E-value=4.2e-19 Score=168.08 Aligned_cols=255 Identities=15% Similarity=0.066 Sum_probs=168.7
Q ss_pred ccccccCCCCCCcEEEEcCCcchhhhhcccccccccCcEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEE
Q 016975 19 GDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVI 98 (379)
Q Consensus 19 ~~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 98 (379)
..+.+++++++||+||++.+... +.. .........|+|...|..... . ..+++. ..+|.++
T Consensus 81 ~~~~~~ik~~~pDvv~~~~~~~~-~~~-~~~~~~~~~p~v~~~~~~~~~------------~----~~r~~~-~~~d~ii 141 (357)
T PRK00726 81 LQARKILKRFKPDVVVGFGGYVS-GPG-GLAARLLGIPLVIHEQNAVPG------------L----ANKLLA-RFAKKVA 141 (357)
T ss_pred HHHHHHHHhcCCCEEEECCCcch-hHH-HHHHHHcCCCEEEEcCCCCcc------------H----HHHHHH-HHhchhe
Confidence 34566778889999999974321 111 001111123777655542211 1 122211 1358999
Q ss_pred EcChhhh-hhhhccceee-cccCCCCccCccccHHHhhcCCCCCcceEEEEEecccccCHHHHH-HHHHHhHhhcCCcEE
Q 016975 99 RLSAATQ-EYANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELL-ELLDDHQKELAGLEV 175 (379)
Q Consensus 99 ~~S~~~~-~~~~~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li-~a~~~l~~~~~~~~l 175 (379)
+.++... +....++..+ ||++.+.+.+.... ......++.+.++++|+....|+...++ +++.++.+. + ..+
T Consensus 142 ~~~~~~~~~~~~~~i~vi~n~v~~~~~~~~~~~---~~~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~~~~~-~-~~~ 216 (357)
T PRK00726 142 TAFPGAFPEFFKPKAVVTGNPVREEILALAAPP---ARLAGREGKPTLLVVGGSQGARVLNEAVPEALALLPEA-L-QVI 216 (357)
T ss_pred ECchhhhhccCCCCEEEECCCCChHhhcccchh---hhccCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhhC-c-EEE
Confidence 8886432 2233455555 89997765432211 1222234566888999888888876655 888888654 3 557
Q ss_pred EEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc--------
Q 016975 176 DLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-------- 247 (379)
Q Consensus 176 ~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-------- 247 (379)
+++|+|+. +.+.+..+ .++++.+.|.+++..++|+.||++|.+|- +++++|||+||+|||++..++
T Consensus 217 ~~~G~g~~-~~~~~~~~-~~~~v~~~g~~~~~~~~~~~~d~~i~~~g----~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~ 290 (357)
T PRK00726 217 HQTGKGDL-EEVRAAYA-AGINAEVVPFIDDMAAAYAAADLVICRAG----ASTVAELAAAGLPAILVPLPHAADDHQTA 290 (357)
T ss_pred EEcCCCcH-HHHHHHhh-cCCcEEEeehHhhHHHHHHhCCEEEECCC----HHHHHHHHHhCCCEEEecCCCCCcCcHHH
Confidence 88999976 55555555 77778889998666699999999998762 689999999999999987632
Q ss_pred -ccccccCCCEEEeC--C--HHHHHHHHHHHHhCCCC--CCcHHHH---hcCCHHHHHHHHHHHHh
Q 016975 248 -NDFFKQFPNCRTYD--D--RNGFVEATLKALAEEPA--LPTEAQR---HQLSWESATERFLQVAE 303 (379)
Q Consensus 248 -~e~i~~~~~g~~~~--~--~~~l~~~i~~~l~~~~~--~~~~~~~---~~~sw~~~~~~~~~~~~ 303 (379)
.+.+.+..+|++++ | +++++++|.++++++.. .|++..+ +.++-+.+++.++++.+
T Consensus 291 ~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 291 NARALVDAGAALLIPQSDLTPEKLAEKLLELLSDPERLEAMAEAARALGKPDAAERLADLIEELAR 356 (357)
T ss_pred HHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHhh
Confidence 24677778898876 5 99999999999998665 4555443 56677777777766543
No 80
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.80 E-value=5.7e-19 Score=168.85 Aligned_cols=256 Identities=13% Similarity=0.121 Sum_probs=166.6
Q ss_pred ccccccCCCCCCcEEEEcCCcchhhhhcccccccccC-cEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceE
Q 016975 19 GDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKV 97 (379)
Q Consensus 19 ~~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~-~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 97 (379)
..+.+++.+++||+||+..|...... . ......+ |++.. ++++ . .+ ..|+ ...+|.+
T Consensus 94 ~~l~~~l~~~kPDvVi~~~p~~~~~~--l-~~~~~~~iP~~~v-~td~---~---~~-----------~~w~-~~~~d~~ 151 (391)
T PRK13608 94 NKLINLLIKEKPDLILLTFPTPVMSV--L-TEQFNINIPVATV-MTDY---R---LH-----------KNWI-TPYSTRY 151 (391)
T ss_pred HHHHHHHHHhCcCEEEECCcHHHHHH--H-HHhcCCCCCEEEE-eCCC---C---cc-----------cccc-cCCCCEE
Confidence 46778888999999999877543221 1 2222233 76544 4433 1 00 0111 1236999
Q ss_pred EEcChhhhhhhh-c-----cceee-cccCCCCccCccccHHHhhcCCCCCcc-eEEEEEecccccCHHHHHHHHHHhHhh
Q 016975 98 IRLSAATQEYAN-S-----IICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAK-GAYYIGKMVWSKGYKELLELLDDHQKE 169 (379)
Q Consensus 98 i~~S~~~~~~~~-~-----~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~-~il~vgrl~~~Kg~~~li~a~~~l~~~ 169 (379)
++.|+.+++... . ++.++ +++++.+..+......+...+..++++ ++++.|++...||++.+++++. +.
T Consensus 152 ~v~s~~~~~~l~~~gi~~~ki~v~GiPv~~~f~~~~~~~~~~~~~~l~~~~~~ilv~~G~lg~~k~~~~li~~~~---~~ 228 (391)
T PRK13608 152 YVATKETKQDFIDVGIDPSTVKVTGIPIDNKFETPIDQKQWLIDNNLDPDKQTILMSAGAFGVSKGFDTMITDIL---AK 228 (391)
T ss_pred EECCHHHHHHHHHcCCCHHHEEEECeecChHhcccccHHHHHHHcCCCCCCCEEEEECCCcccchhHHHHHHHHH---hc
Confidence 999988775443 2 22222 344433322222222223333334444 4567889998999999999863 23
Q ss_pred cCCcEEEEE-cCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCC-C
Q 016975 170 LAGLEVDLY-GNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH-P 246 (379)
Q Consensus 170 ~~~~~l~i~-G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~-g 246 (379)
.++++++++ |.++. .+++++.... ..++.+.|++++..++|+.||++|. ++.|+++.|||+||+|+|+++. +
T Consensus 229 ~~~~~~vvv~G~~~~l~~~l~~~~~~-~~~v~~~G~~~~~~~~~~~aDl~I~----k~gg~tl~EA~a~G~PvI~~~~~p 303 (391)
T PRK13608 229 SANAQVVMICGKSKELKRSLTAKFKS-NENVLILGYTKHMNEWMASSQLMIT----KPGGITISEGLARCIPMIFLNPAP 303 (391)
T ss_pred CCCceEEEEcCCCHHHHHHHHHHhcc-CCCeEEEeccchHHHHHHhhhEEEe----CCchHHHHHHHHhCCCEEECCCCC
Confidence 467888665 54432 3444443322 2378888998777799999999996 3468999999999999999975 5
Q ss_pred ccc-----ccccCCCEEEeCCHHHHHHHHHHHHhCCCC--CCcHHHH---hcCCHHHHHHHHHHHHhc
Q 016975 247 SND-----FFKQFPNCRTYDDRNGFVEATLKALAEEPA--LPTEAQR---HQLSWESATERFLQVAEL 304 (379)
Q Consensus 247 ~~e-----~i~~~~~g~~~~~~~~l~~~i~~~l~~~~~--~~~~~~~---~~~sw~~~~~~~~~~~~~ 304 (379)
+.| ++.+...|+..+|+++++++|.+++++++. .|+++.+ ..++|+.+++.+++.+..
T Consensus 304 gqe~~N~~~~~~~G~g~~~~~~~~l~~~i~~ll~~~~~~~~m~~~~~~~~~~~s~~~i~~~l~~l~~~ 371 (391)
T PRK13608 304 GQELENALYFEEKGFGKIADTPEEAIKIVASLTNGNEQLTNMISTMEQDKIKYATQTICRDLLDLIGH 371 (391)
T ss_pred CcchhHHHHHHhCCcEEEeCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhh
Confidence 433 345666777778999999999999987654 5555444 679999999999998874
No 81
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.79 E-value=1.3e-18 Score=164.12 Aligned_cols=273 Identities=14% Similarity=0.110 Sum_probs=176.8
Q ss_pred CCCcEEEEcCCcchhhhhcccccccc---cCcEEEEeccChHHHHHHhhcchHHHHHHHHHHHHH--HHHhcceEEEcCh
Q 016975 28 EVADIAVLEEPEHLTWFHHGKRWKTK---FRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWL--VDIYCHKVIRLSA 102 (379)
Q Consensus 28 ~~~DvV~~~~p~~~~~~~~~~~~~~~---~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~vi~~S~ 102 (379)
++.|++++.....-.|.. .+... ...++..+|.....+.. +.+..+.+....+.... .....|++++.|.
T Consensus 144 ~~~d~~i~d~~~~~~~l~---~~~~~p~~~~~i~~~~h~~~~lla~--r~g~~~~l~~~~l~~~e~e~~~~~~~~~~ns~ 218 (495)
T KOG0853|consen 144 EKVDPIIEDFVSACVPLL---KQLSGPDVIIKIYFYCHFPDSLLAK--RLGVLKVLYRHALDKIEEETTGLAWKILVNSY 218 (495)
T ss_pred hhhceeecchHHHHHHHH---HHhcCCcccceeEEeccchHHHhcc--ccCccceeehhhhhhhhhhhhhccceEecchh
Confidence 567888776543333331 12221 12556667766555553 22222222222222211 1111588888888
Q ss_pred hhhhhhhccceee---------cccCCCCccCccccHH-------HhhcCCCCCcceEEEEEecccccCHHHHHHHHHHh
Q 016975 103 ATQEYANSIICNV---------HGVNPKFLEIGKKKKE-------QQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDH 166 (379)
Q Consensus 103 ~~~~~~~~~i~~i---------~gvd~~~~~~~~~~~~-------~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l 166 (379)
.+.......+..+ -++|.+.+.++..... +...........+.-+.++.+.||++.+++++..+
T Consensus 219 ~~~~~f~~~~~~L~~~d~~~~y~ei~~s~~~~~~~~~~~~~~~~~r~~~~v~~~d~~~~siN~~~pgkd~~l~l~a~~~~ 298 (495)
T KOG0853|consen 219 FTKRQFKATFVSLSNSDITSTYPEIDGSWFTYGQYESHLELRLPVRLYRGVSGIDRFFPSINRFEPGKDQDLALPAFTLL 298 (495)
T ss_pred hhhhhhhhhhhhcCCCCcceeeccccchhccccccccchhcccccceeeeecccceEeeeeeecCCCCCceeehhhHHhh
Confidence 7665544332222 3555444433111111 01111222244566677899999999999999999
Q ss_pred Hhhc-----CCcEEEEEcCC-cC---------hHHHHHHHHhcCC---eeEEecCCCCHH--HHHhhc-CEEEecCCCCc
Q 016975 167 QKEL-----AGLEVDLYGNG-ED---------FNQIQEAAEKLKI---VVRVYPGRDHAD--LIFHDY-KVFLNPSTTDV 225 (379)
Q Consensus 167 ~~~~-----~~~~l~i~G~g-~~---------~~~l~~~~~~~~l---~v~~~g~~~~~~--~~~~~~-dv~v~ps~~E~ 225 (379)
.... ++.++.++|+. -+ ..+|.++++++++ .+.|.....+.+ .+++.+ -+|+.|.. |.
T Consensus 299 ~~~i~~~~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~~l~g~~v~~~~s~~~~~~yrl~adt~~v~~qPa~-E~ 377 (495)
T KOG0853|consen 299 HDSIPEPSISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEYDLLGQFVWFLPSTTRVAKYRLAADTKGVLYQPAN-EH 377 (495)
T ss_pred hcccCCCCCCceEEEEecCCCccccchhhHHHHHHHHHHHHHhCccCceEEEecCCchHHHHHHHHhcceEEecCCC-CC
Confidence 8666 56889999943 21 4567788888866 334446666666 555555 34667777 99
Q ss_pred chhHHHHHHHcCCeEEecCCC-cccccccCCCEEEeC-CHH---HHHHHHHHHHhCCCC--CCcHHHH----hcCCHHHH
Q 016975 226 VCTTTAEALAMGKIVVCANHP-SNDFFKQFPNCRTYD-DRN---GFVEATLKALAEEPA--LPTEAQR----HQLSWESA 294 (379)
Q Consensus 226 ~~~~~~EAma~G~PVI~t~~g-~~e~i~~~~~g~~~~-~~~---~l~~~i~~~l~~~~~--~~~~~~~----~~~sw~~~ 294 (379)
||++++|||+||+|||+|+.| +.|++.++.+|++++ +.+ .+++++.++..++.. +++.+++ +.|+|.+.
T Consensus 378 FGiv~IEAMa~glPvvAt~~GGP~EiV~~~~tG~l~dp~~e~~~~~a~~~~kl~~~p~l~~~~~~~G~~rV~e~fs~~~~ 457 (495)
T KOG0853|consen 378 FGIVPIEAMACGLPVVATNNGGPAEIVVHGVTGLLIDPGQEAVAELADALLKLRRDPELWARMGKNGLKRVKEMFSWQHY 457 (495)
T ss_pred ccceeHHHHhcCCCEEEecCCCceEEEEcCCcceeeCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999995 499999999999999 777 699999999999877 6676655 67999999
Q ss_pred HHHHHHHHhccc
Q 016975 295 TERFLQVAELDQ 306 (379)
Q Consensus 295 ~~~~~~~~~~~~ 306 (379)
.+++.++.....
T Consensus 458 ~~ri~~~~~~~~ 469 (495)
T KOG0853|consen 458 SERIASVLGKYL 469 (495)
T ss_pred HHHHHHHhHhcC
Confidence 999999888544
No 82
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.76 E-value=1.6e-17 Score=156.52 Aligned_cols=234 Identities=15% Similarity=0.117 Sum_probs=149.8
Q ss_pred cccccCCCCCCcEEEEcCCcchhhhhcccccccccC-cEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEE
Q 016975 20 DISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVI 98 (379)
Q Consensus 20 ~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~-~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 98 (379)
.+.+++++.+||+||++.+....+.. ...+..+ |++...+.... ... .+|+ ..++|.++
T Consensus 81 ~l~~~i~~~~pDvVi~~~~~~~~~~~---~~~~~~~~p~v~~~~~~~~------------~~~----~~~~-~~~~d~ii 140 (348)
T TIGR01133 81 QARRILKKFKPDAVIGFGGYVSGPAG---LAAKLLGIPLFHHEQNAVP------------GLT----NKLL-SRFAKKVL 140 (348)
T ss_pred HHHHHHHhcCCCEEEEcCCcccHHHH---HHHHHcCCCEEEECCCCCc------------cHH----HHHH-HHHhCeeE
Confidence 56677888999999998654322221 1111122 66533222111 111 2222 12359999
Q ss_pred EcChhhhhhhhccceee-cccCCCCccCccccHHHhhcCCCCCcceEEEEEecccccCHHH-HHHHHHHhHhhcCCcEEE
Q 016975 99 RLSAATQEYANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKE-LLELLDDHQKELAGLEVD 176 (379)
Q Consensus 99 ~~S~~~~~~~~~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~-li~a~~~l~~~~~~~~l~ 176 (379)
++|+.++++... ..+ ||++..++.+... ....+..++.++++++|+....|++.. +++++..+.+. +++++
T Consensus 141 ~~~~~~~~~~~~--~~i~n~v~~~~~~~~~~---~~~~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~l~~~--~~~~~ 213 (348)
T TIGR01133 141 ISFPGAKDHFEA--VLVGNPVRQEIRSLPVP---RERFGLREGKPTILVLGGSQGAKILNELVPKALAKLAEK--GIQIV 213 (348)
T ss_pred ECchhHhhcCCc--eEEcCCcCHHHhcccch---hhhcCCCCCCeEEEEECCchhHHHHHHHHHHHHHHHhhc--CcEEE
Confidence 999988766522 333 8888665543211 112233445678999998777888765 45888877653 45554
Q ss_pred -EEcCCcChHHHHHHHHhcCCeeEEecCCC-CHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc-------
Q 016975 177 -LYGNGEDFNQIQEAAEKLKIVVRVYPGRD-HADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS------- 247 (379)
Q Consensus 177 -i~G~g~~~~~l~~~~~~~~l~v~~~g~~~-~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~------- 247 (379)
++|++ +.+.+++.++++++...+ .... +..++|+.||++|.+| + +++++|||++|+|+|+++.++
T Consensus 214 ~~~g~~-~~~~l~~~~~~~~l~~~v-~~~~~~~~~~l~~ad~~v~~~---g-~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~ 287 (348)
T TIGR01133 214 HQTGKN-DLEKVKNVYQELGIEAIV-TFIDENMAAAYAAADLVISRA---G-ASTVAELAAAGVPAILIPYPYAADDQYY 287 (348)
T ss_pred EECCcc-hHHHHHHHHhhCCceEEe-cCcccCHHHHHHhCCEEEECC---C-hhHHHHHHHcCCCEEEeeCCCCccchhh
Confidence 44544 447888888877763222 1222 3448999999999875 2 789999999999999998732
Q ss_pred -ccccccCCCEEEeC--C--HHHHHHHHHHHHhCCCC--CCcHHHH
Q 016975 248 -NDFFKQFPNCRTYD--D--RNGFVEATLKALAEEPA--LPTEAQR 286 (379)
Q Consensus 248 -~e~i~~~~~g~~~~--~--~~~l~~~i~~~l~~~~~--~~~~~~~ 286 (379)
.+++.+..+|++++ | +++++++|.++++++.. .|+++++
T Consensus 288 ~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~ 333 (348)
T TIGR01133 288 NAKFLEDLGAGLVIRQKELLPEKLLEALLKLLLDPANLEAMAEAAR 333 (348)
T ss_pred HHHHHHHCCCEEEEecccCCHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 24788888998886 4 99999999999987654 4555443
No 83
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.76 E-value=2.2e-18 Score=139.75 Aligned_cols=130 Identities=23% Similarity=0.265 Sum_probs=94.6
Q ss_pred ceEEEEEecccccCHHHHHH-HHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEec
Q 016975 142 KGAYYIGKMVWSKGYKELLE-LLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNP 220 (379)
Q Consensus 142 ~~il~vgrl~~~Kg~~~li~-a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~p 220 (379)
..++++|++.+.|+++.+++ ++.++.++.|+++|.|+|.+++ ++++. ...+++++|.+++..++++.||++++|
T Consensus 3 ~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~~~--~l~~~---~~~~v~~~g~~~e~~~~l~~~dv~l~p 77 (135)
T PF13692_consen 3 LYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNGPD--ELKRL---RRPNVRFHGFVEELPEILAAADVGLIP 77 (135)
T ss_dssp EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECESS---HHCCH---HHCTEEEE-S-HHHHHHHHC-SEEEE-
T ss_pred ccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCCHH--HHHHh---cCCCEEEcCCHHHHHHHHHhCCEEEEE
Confidence 47889999999999999999 9999999999999999999887 24444 123899999993222999999999999
Q ss_pred CC-CCcchhHHHHHHHcCCeEEecCCCcccccccCCCEEEeC-CHHHHHHHHHHHHhC
Q 016975 221 ST-TDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYD-DRNGFVEATLKALAE 276 (379)
Q Consensus 221 s~-~E~~~~~~~EAma~G~PVI~t~~g~~e~i~~~~~g~~~~-~~~~l~~~i~~~l~~ 276 (379)
+. .++++++++|||++|+|||+++.+..+++.....|.++. |+++++++|.++++|
T Consensus 78 ~~~~~~~~~k~~e~~~~G~pvi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 78 SRFNEGFPNKLLEAMAAGKPVIASDNGAEGIVEEDGCGVLVANDPEELAEAIERLLND 135 (135)
T ss_dssp BSS-SCC-HHHHHHHCTT--EEEEHHHCHCHS---SEEEE-TT-HHHHHHHHHHHHH-
T ss_pred eeCCCcCcHHHHHHHHhCCCEEECCcchhhheeecCCeEEECCCHHHHHHHHHHHhcC
Confidence 86 589999999999999999999996666666555555545 999999999999875
No 84
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.75 E-value=2.5e-16 Score=146.34 Aligned_cols=204 Identities=20% Similarity=0.269 Sum_probs=154.4
Q ss_pred cceEEEcChhhhhhhhc-----cceee-cccCCCCccCccccHHHhhcCCCCC--cceEEEEEecccccCHHHHHHHHHH
Q 016975 94 CHKVIRLSAATQEYANS-----IICNV-HGVNPKFLEIGKKKKEQQQNGTHAF--AKGAYYIGKMVWSKGYKELLELLDD 165 (379)
Q Consensus 94 ~d~vi~~S~~~~~~~~~-----~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~--~~~il~vgrl~~~Kg~~~li~a~~~ 165 (379)
.+.++..+......... .+..+ ++++...+..... ..... ...++++|++.+.||++.+++++..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~ 223 (381)
T COG0438 151 ADRVIAVSPALKELLEALGVPNKIVVIPNGIDTEKFAPARI-------GLLPEGGKFVVLYVGRLDPEKGLDLLIEAAAK 223 (381)
T ss_pred ccEEEECCHHHHHHHHHhCCCCCceEecCCcCHHHcCcccc-------CCCcccCceEEEEeeccChhcCHHHHHHHHHH
Confidence 47788888665332221 12222 6777665543200 01111 3589999999999999999999999
Q ss_pred hHhhcCCcEEEEEcCCcC-hHHHHHHHHhcCC--eeEEecCCCCHH--HHHhhcCEEEecCCCCcchhHHHHHHHcCCeE
Q 016975 166 HQKELAGLEVDLYGNGED-FNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIV 240 (379)
Q Consensus 166 l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~l--~v~~~g~~~~~~--~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PV 240 (379)
+....+++.++++|.++. ...+.....+.+. ++.+.|.++..+ .+++.+|++++||..|++|++++|||++|+||
T Consensus 224 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~v~ps~~e~~~~~~~Ea~a~g~pv 303 (381)
T COG0438 224 LKKRGPDIKLVIVGDGPERREELEKLAKKLGLEDNVKFLGYVPDEELAELLASADVFVLPSLSEGFGLVLLEAMAAGTPV 303 (381)
T ss_pred hhhhcCCeEEEEEcCCCccHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHhCCEEEeccccccchHHHHHHHhcCCcE
Confidence 988777789999999988 3666666666653 677888888444 88998999999999999999999999999999
Q ss_pred EecCCC-cccccccCCCEEEeC--CHHHHHHHHHHHHhCCCC--CCcH----HHHhcCCHHHHHHHHHHHHhc
Q 016975 241 VCANHP-SNDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTE----AQRHQLSWESATERFLQVAEL 304 (379)
Q Consensus 241 I~t~~g-~~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~----~~~~~~sw~~~~~~~~~~~~~ 304 (379)
|+++.+ ..+++.++.+|++++ +.+++++++..++++... .+.. .....|+|+.+++++.+.+..
T Consensus 304 i~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (381)
T COG0438 304 IASDVGGIPEVVEDGETGLLVPPGDVEELADALEQLLEDPELREELGEAARERVEEEFSWERIAEQLLELYEE 376 (381)
T ss_pred EECCCCChHHHhcCCCceEecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 999995 588888876787666 589999999999888722 2222 222689999999999988874
No 85
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=99.75 E-value=1.7e-17 Score=155.33 Aligned_cols=224 Identities=13% Similarity=0.050 Sum_probs=142.0
Q ss_pred ccccCCCCCC-cEEEEcCCcchhh-h-h-cccccccccCcEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcce
Q 016975 21 ISEVIPDEVA-DIAVLEEPEHLTW-F-H-HGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHK 96 (379)
Q Consensus 21 l~~~l~~~~~-DvV~~~~p~~~~~-~-~-~~~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 96 (379)
+..++...++ |+||++.|..+.. . . ....+++...|+|..+|+.++.... .... ..+....... .||.
T Consensus 55 ~~~~~~~~~~~Dvv~~~~P~~~~~~~~~~~~~~~k~~~~k~i~~ihD~~~~~~~--~~~~----~~~~~~~~~~--~aD~ 126 (333)
T PRK09814 55 LDGILASLKPGDIVIFQFPTWNGFEFDRLFVDKLKKKQVKIIILIHDIEPLRFD--SNYY----LMKEEIDMLN--LADV 126 (333)
T ss_pred HHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHHHcCCEEEEEECCcHHHhcc--ccch----hhHHHHHHHH--hCCE
Confidence 3345566677 9999999887642 1 1 1123333324999999998765332 1111 1122222222 2699
Q ss_pred EEEcChhhhhhhhcc-ceeecccCCCCccCccccHHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhhcCCcEE
Q 016975 97 VIRLSAATQEYANSI-ICNVHGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEV 175 (379)
Q Consensus 97 vi~~S~~~~~~~~~~-i~~i~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l 175 (379)
+|++|+.+++...+. +....-++...|........ . .....++.|+|+|++....++ ....++++|
T Consensus 127 iI~~S~~~~~~l~~~g~~~~~i~~~~~~~~~~~~~~-~--~~~~~~~~i~yaG~l~k~~~l----------~~~~~~~~l 193 (333)
T PRK09814 127 LIVHSKKMKDRLVEEGLTTDKIIVQGIFDYLNDIEL-V--KTPSFQKKINFAGNLEKSPFL----------KNWSQGIKL 193 (333)
T ss_pred EEECCHHHHHHHHHcCCCcCceEecccccccccccc-c--ccccCCceEEEecChhhchHH----------HhcCCCCeE
Confidence 999999988765432 21111111111211100000 0 011235589999999843321 112467999
Q ss_pred EEEcCCcChHHHHHHHHhcCCeeEEecCCCCHH--HHHhhcCEEEecCC-----------CCcchhHHHHHHHcCCeEEe
Q 016975 176 DLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPST-----------TDVVCTTTAEALAMGKIVVC 242 (379)
Q Consensus 176 ~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~--~~~~~~dv~v~ps~-----------~E~~~~~~~EAma~G~PVI~ 242 (379)
+|+|+|+... ....++.|+|.++.++ .+|+. |+.+.+.. .-++|.++.|+||||+|||+
T Consensus 194 ~i~G~g~~~~-------~~~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~ 265 (333)
T PRK09814 194 TVFGPNPEDL-------ENSANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIV 265 (333)
T ss_pred EEECCCcccc-------ccCCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEE
Confidence 9999998744 2334899999999998 67777 65554321 13578889999999999999
Q ss_pred cCCCc-ccccccCCCEEEeCCHHHHHHHHHHH
Q 016975 243 ANHPS-NDFFKQFPNCRTYDDRNGFVEATLKA 273 (379)
Q Consensus 243 t~~g~-~e~i~~~~~g~~~~~~~~l~~~i~~~ 273 (379)
++.++ .+++.++.+|+++++.+++++++..+
T Consensus 266 ~~~~~~~~~V~~~~~G~~v~~~~el~~~l~~~ 297 (333)
T PRK09814 266 WSKAAIADFIVENGLGFVVDSLEELPEIIDNI 297 (333)
T ss_pred CCCccHHHHHHhCCceEEeCCHHHHHHHHHhc
Confidence 99955 99999999999999999999999874
No 86
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.71 E-value=6e-17 Score=153.80 Aligned_cols=264 Identities=11% Similarity=0.052 Sum_probs=153.2
Q ss_pred ccccccCCCCCCcEEEEcCCcchhhhhcccccccccC-cEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceE
Q 016975 19 GDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKV 97 (379)
Q Consensus 19 ~~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~-~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 97 (379)
..+.+++.+.+||+||++.....++. +.......+ |++.+.++... .. ....+.... .+.+....||.+
T Consensus 76 ~~l~~~l~~~~pDiv~~~gd~~~~la--~a~aa~~~~ipv~h~~~g~~s--~~--~~~~~~~~~----~r~~~~~~ad~~ 145 (365)
T TIGR00236 76 EGLEELLLEEKPDIVLVQGDTTTTLA--GALAAFYLQIPVGHVEAGLRT--GD--RYSPMPEEI----NRQLTGHIADLH 145 (365)
T ss_pred HHHHHHHHHcCCCEEEEeCCchHHHH--HHHHHHHhCCCEEEEeCCCCc--CC--CCCCCccHH----HHHHHHHHHHhc
Confidence 35778888999999999965433332 112222223 77544332210 00 000011111 122122236899
Q ss_pred EEcChhhhhhh-hc-----cceee-ccc-CCCCccCccc-cHHHhhcCCCCCcceEEEEE-ec-ccccCHHHHHHHHHHh
Q 016975 98 IRLSAATQEYA-NS-----IICNV-HGV-NPKFLEIGKK-KKEQQQNGTHAFAKGAYYIG-KM-VWSKGYKELLELLDDH 166 (379)
Q Consensus 98 i~~S~~~~~~~-~~-----~i~~i-~gv-d~~~~~~~~~-~~~~~~~~~~~~~~~il~vg-rl-~~~Kg~~~li~a~~~l 166 (379)
++.|+..++.. +. ++.++ |++ |......... ......... .++..+++.+ |. ...||++.+++++.++
T Consensus 146 ~~~s~~~~~~l~~~G~~~~~I~vign~~~d~~~~~~~~~~~~~~~~~~~-~~~~~vl~~~hr~~~~~k~~~~ll~a~~~l 224 (365)
T TIGR00236 146 FAPTEQAKDNLLRENVKADSIFVTGNTVIDALLTNVEIAYSSPVLSEFG-EDKRYILLTLHRRENVGEPLENIFKAIREI 224 (365)
T ss_pred cCCCHHHHHHHHHcCCCcccEEEeCChHHHHHHHHHhhccchhHHHhcC-CCCCEEEEecCchhhhhhHHHHHHHHHHHH
Confidence 99997766433 32 33344 664 3211111110 111111112 2234566655 43 3469999999999998
Q ss_pred HhhcCCcEEEEEcCC-cC-hHHHHHHHHhcCCeeEEecCCCCHH--HHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEe
Q 016975 167 QKELAGLEVDLYGNG-ED-FNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVC 242 (379)
Q Consensus 167 ~~~~~~~~l~i~G~g-~~-~~~l~~~~~~~~l~v~~~g~~~~~~--~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~ 242 (379)
.++.|++++++.|.+ ++ ...+.+.. ....++.|.+.+...+ .+|+.+|+++.+| |..++|||+||+|||+
T Consensus 225 ~~~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~l~~ad~vv~~S-----g~~~~EA~a~g~PvI~ 298 (365)
T TIGR00236 225 VEEFEDVQIVYPVHLNPVVREPLHKHL-GDSKRVHLIEPLEYLDFLNLAANSHLILTDS-----GGVQEEAPSLGKPVLV 298 (365)
T ss_pred HHHCCCCEEEEECCCChHHHHHHHHHh-CCCCCEEEECCCChHHHHHHHHhCCEEEECC-----hhHHHHHHHcCCCEEE
Confidence 877788999888643 32 22222222 2223788889888777 8999999999887 5668999999999999
Q ss_pred cC-CCc-ccccccCCCEEEeC-CHHHHHHHHHHHHhCCCC--CCcHHHH---hcCCHHHHHHHHHH
Q 016975 243 AN-HPS-NDFFKQFPNCRTYD-DRNGFVEATLKALAEEPA--LPTEAQR---HQLSWESATERFLQ 300 (379)
Q Consensus 243 t~-~g~-~e~i~~~~~g~~~~-~~~~l~~~i~~~l~~~~~--~~~~~~~---~~~sw~~~~~~~~~ 300 (379)
+. .|+ .+.+..+ .+.+++ |++++++++.++++++.. .++.... ...+++++++.+.+
T Consensus 299 ~~~~~~~~e~~~~g-~~~lv~~d~~~i~~ai~~ll~~~~~~~~~~~~~~~~g~~~a~~ri~~~l~~ 363 (365)
T TIGR00236 299 LRDTTERPETVEAG-TNKLVGTDKENITKAAKRLLTDPDEYKKMSNASNPYGDGEASERIVEELLN 363 (365)
T ss_pred CCCCCCChHHHhcC-ceEEeCCCHHHHHHHHHHHHhChHHHHHhhhcCCCCcCchHHHHHHHHHHh
Confidence 74 465 5666655 455556 999999999999987653 3332211 23445555555544
No 87
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.70 E-value=1.1e-16 Score=151.82 Aligned_cols=261 Identities=14% Similarity=0.054 Sum_probs=159.1
Q ss_pred cccccCCCCCCcEEEEcCCcchhhhhcccccccccC-cEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEE
Q 016975 20 DISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVI 98 (379)
Q Consensus 20 ~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~-~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 98 (379)
.+.+.+.+.+||+||++......+. +....+..+ |++.+.++... +.. .... ......+ ...+|.++
T Consensus 79 ~l~~~l~~~~pDvV~~~g~~~~~~~--~~~aa~~~~iPvv~~~~g~~s-~~~--~~~~--~~~r~~~-----~~~ad~~~ 146 (363)
T cd03786 79 GLEAVLLEEKPDLVLVLGDTNETLA--AALAAFKLGIPVAHVEAGLRS-FDR--GMPD--EENRHAI-----DKLSDLHF 146 (363)
T ss_pred HHHHHHHHhCCCEEEEeCCchHHHH--HHHHHHHcCCCEEEEeccccc-CCC--CCCc--hHHHHHH-----HHHhhhcc
Confidence 4666777789999999864333332 112222223 87765554211 100 0100 1111111 12358999
Q ss_pred EcChhhhhhhh------ccceee-ccc-CCCCccCcccc-H-HHhhcCCCCCcceEEEEEeccc---ccCHHHHHHHHHH
Q 016975 99 RLSAATQEYAN------SIICNV-HGV-NPKFLEIGKKK-K-EQQQNGTHAFAKGAYYIGKMVW---SKGYKELLELLDD 165 (379)
Q Consensus 99 ~~S~~~~~~~~------~~i~~i-~gv-d~~~~~~~~~~-~-~~~~~~~~~~~~~il~vgrl~~---~Kg~~~li~a~~~ 165 (379)
++|+..++... +++..+ |++ |...+...... . .+...+..+.+..+++.|+... .||++.+++++..
T Consensus 147 ~~s~~~~~~l~~~G~~~~kI~vign~v~d~~~~~~~~~~~~~~~~~~~~~~~~~vlv~~~r~~~~~~~k~~~~l~~al~~ 226 (363)
T cd03786 147 APTEEARRNLLQEGEPPERIFVVGNTMIDALLRLLELAKKELILELLGLLPKKYILVTLHRVENVDDGEQLEEILEALAE 226 (363)
T ss_pred CCCHHHHHHHHHcCCCcccEEEECchHHHHHHHHHHhhccchhhhhcccCCCCEEEEEeCCccccCChHHHHHHHHHHHH
Confidence 99988775542 234344 553 43222111111 1 1112223333446668888764 7999999999998
Q ss_pred hHhhcCCcEEEEEcCCcChHHHHHHHHhcC---CeeEEecCCCCHH--HHHhhcCEEEecCCCCcchhHHHHHHHcCCeE
Q 016975 166 HQKELAGLEVDLYGNGEDFNQIQEAAEKLK---IVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIV 240 (379)
Q Consensus 166 l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~---l~v~~~g~~~~~~--~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PV 240 (379)
+.+. ++.+++.|+++..+.+++..++++ .++.|.|.....+ .+|+.||++|.+|. | .+.|||++|+||
T Consensus 227 l~~~--~~~vi~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ad~~v~~Sg----g-i~~Ea~~~g~Pv 299 (363)
T cd03786 227 LAEE--DVPVVFPNHPRTRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKNADLVLTDSG----G-IQEEASFLGVPV 299 (363)
T ss_pred HHhc--CCEEEEECCCChHHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHHcCcEEEEcCc----c-HHhhhhhcCCCE
Confidence 8643 677888788877788888877764 3778888766666 88999999999984 3 478999999999
Q ss_pred EecCC-Cc-ccccccCCCEEEeC-CHHHHHHHHHHHHhCCCCCCcHHHHhcCCHHHHHHHHHHH
Q 016975 241 VCANH-PS-NDFFKQFPNCRTYD-DRNGFVEATLKALAEEPALPTEAQRHQLSWESATERFLQV 301 (379)
Q Consensus 241 I~t~~-g~-~e~i~~~~~g~~~~-~~~~l~~~i~~~l~~~~~~~~~~~~~~~sw~~~~~~~~~~ 301 (379)
|+++. +. .+.+.++. +..+. |+++++++|.++++++....... ...|.-.+.++++.+.
T Consensus 300 I~~~~~~~~~~~~~~g~-~~~~~~~~~~i~~~i~~ll~~~~~~~~~~-~~~~~~~~a~~~I~~~ 361 (363)
T cd03786 300 LNLRDRTERPETVESGT-NVLVGTDPEAILAAIEKLLSDEFAYSLMS-INPYGDGNASERIVEI 361 (363)
T ss_pred EeeCCCCccchhhheee-EEecCCCHHHHHHHHHHHhcCchhhhcCC-CCCCCCCHHHHHHHHH
Confidence 99986 43 55555553 34444 79999999999999865521111 3344434555555544
No 88
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.69 E-value=1.3e-15 Score=146.65 Aligned_cols=159 Identities=15% Similarity=0.061 Sum_probs=123.0
Q ss_pred cccCCCCccCccccH-------HHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhhcCC----cEEEEEcCCc--
Q 016975 116 HGVNPKFLEIGKKKK-------EQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAG----LEVDLYGNGE-- 182 (379)
Q Consensus 116 ~gvd~~~~~~~~~~~-------~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~----~~l~i~G~g~-- 182 (379)
.|||++.|....... ..++. ..++++|++++|+++.||+...++|++++.+++|+ +.|+++|.+.
T Consensus 255 iGID~~~f~~~~~~~~~~~~~~~lr~~--~~~~kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe~~gkv~Lvqi~~psr~ 332 (487)
T TIGR02398 255 VGTDPERIRSALAAASIREMMERIRSE--LAGVKLILSAERVDYTKGILEKLNAYERLLERRPELLGKVTLVTACVPAAS 332 (487)
T ss_pred CEecHHHHHHHhcCchHHHHHHHHHHH--cCCceEEEEecccccccCHHHHHHHHHHHHHhCccccCceEEEEEeCCCcc
Confidence 699988874422111 11111 22577999999999999999999999999888885 6899888653
Q ss_pred ---C----hHHHHHHHHhcC-------C-ee-EEecCCCCHH--HHHhhcCEEEecCCCCcchhHHHHHHHcCC----eE
Q 016975 183 ---D----FNQIQEAAEKLK-------I-VV-RVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGK----IV 240 (379)
Q Consensus 183 ---~----~~~l~~~~~~~~-------l-~v-~~~g~~~~~~--~~~~~~dv~v~ps~~E~~~~~~~EAma~G~----PV 240 (379)
+ ..++++.+.+.+ . .+ .+.+.++.++ .+|+.||+++.||..||++++..|++||+. |+
T Consensus 333 ~v~~y~~l~~~v~~~v~~IN~~fg~~~~~pv~~~~~~v~~~el~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~~~~GvL 412 (487)
T TIGR02398 333 GMTIYDELQGQIEQAVGRINGRFARIGWTPLQFFTRSLPYEEVSAWFAMADVMWITPLRDGLNLVAKEYVAAQGLLDGVL 412 (487)
T ss_pred cchHHHHHHHHHHHHHHHHhhccCCCCCccEEEEcCCCCHHHHHHHHHhCCEEEECccccccCcchhhHHhhhcCCCCCE
Confidence 2 344555554431 1 22 4458888888 999999999999999999999999999998 99
Q ss_pred EecCC-CcccccccCCCEEEeC--CHHHHHHHHHHHHhCCCC
Q 016975 241 VCANH-PSNDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA 279 (379)
Q Consensus 241 I~t~~-g~~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~~ 279 (379)
|.|.. |+.+.+. .+++++ |+++++++|.++++.+..
T Consensus 413 ILSefaGaa~~l~---~AllVNP~d~~~~A~ai~~AL~m~~~ 451 (487)
T TIGR02398 413 VLSEFAGAAVELK---GALLTNPYDPVRMDETIYVALAMPKA 451 (487)
T ss_pred EEeccccchhhcC---CCEEECCCCHHHHHHHHHHHHcCCHH
Confidence 99999 6666553 367777 999999999999998765
No 89
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.66 E-value=2.2e-14 Score=127.20 Aligned_cols=270 Identities=14% Similarity=0.080 Sum_probs=169.2
Q ss_pred CCCCcEEEEcCCcchhhhhcccccccccCcEEEEeccCh-----HHHHHHhhcchHHHHHHHHHHHHHHHHh------cc
Q 016975 27 DEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNY-----LEYVKREKNGRLQAFLLKYANSWLVDIY------CH 95 (379)
Q Consensus 27 ~~~~DvV~~~~p~~~~~~~~~~~~~~~~~~vv~~~h~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d 95 (379)
++.|||.+=.--..+++.. .+. -...|++..+|-.. +.-........+..+-.-..++++.+.| +|
T Consensus 148 r~~Pdi~IDtMGY~fs~p~--~r~-l~~~~V~aYvHYP~iS~DML~~l~qrq~s~~l~~~KlaY~rlFa~lY~~~G~~ad 224 (465)
T KOG1387|consen 148 RFPPDIFIDTMGYPFSYPI--FRR-LRRIPVVAYVHYPTISTDMLKKLFQRQKSGILVWGKLAYWRLFALLYQSAGSKAD 224 (465)
T ss_pred hCCchheEecCCCcchhHH--HHH-HccCceEEEEecccccHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHhccccce
Confidence 6778887754333333331 121 11238888888532 2222111111133333334555555555 78
Q ss_pred eEEEcChhhhhhhhccceeecccCCCCccCccccHHHhh-cC-CCCCcceEEEEEecccccCHHHHHHHHHHhHhh----
Q 016975 96 KVIRLSAATQEYANSIICNVHGVNPKFLEIGKKKKEQQQ-NG-THAFAKGAYYIGKMVWSKGYKELLELLDDHQKE---- 169 (379)
Q Consensus 96 ~vi~~S~~~~~~~~~~i~~i~gvd~~~~~~~~~~~~~~~-~~-~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~---- 169 (379)
.+++.|..+++...+-- ...+....+|+-....... .. .....+.++++|.+.|.||+. +++.......+
T Consensus 225 ~vm~NssWT~nHI~qiW---~~~~~~iVyPPC~~e~lks~~~te~~r~~~ll~l~Q~RPEKnH~-~Lql~Al~~~~~pl~ 300 (465)
T KOG1387|consen 225 IVMTNSSWTNNHIKQIW---QSNTCSIVYPPCSTEDLKSKFGTEGERENQLLSLAQFRPEKNHK-ILQLFALYLKNEPLE 300 (465)
T ss_pred EEEecchhhHHHHHHHh---hccceeEEcCCCCHHHHHHHhcccCCcceEEEEEeecCcccccH-HHHHHHHHHhcCchh
Confidence 88888888775433210 0111112233222222211 11 233466899999999999999 55554433222
Q ss_pred --cCCcEEEEEcCC---cCh---HHHHHHHHhcCC--eeEEecCCCCHH--HHHhhcCEEEecCCCCcchhHHHHHHHcC
Q 016975 170 --LAGLEVDLYGNG---EDF---NQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMG 237 (379)
Q Consensus 170 --~~~~~l~i~G~g---~~~---~~l~~~~~~~~l--~v~~~g~~~~~~--~~~~~~dv~v~ps~~E~~~~~~~EAma~G 237 (379)
.++++|+++|+- +|. ..|+..++++++ ++.|.-.++.++ ++|..|.+.|+.-..|-||+.++|+||+|
T Consensus 301 a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~~~v~F~~N~Py~~lv~lL~~a~iGvh~MwNEHFGIsVVEyMAAG 380 (465)
T KOG1387|consen 301 ASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELKIPKHVQFEKNVPYEKLVELLGKATIGVHTMWNEHFGISVVEYMAAG 380 (465)
T ss_pred hccCCceEEEEeccCChhhHHHHHHHHHHHHhcCCccceEEEecCCHHHHHHHhccceeehhhhhhhhcchhHHHHHhcC
Confidence 257999999953 333 346667777777 778888899998 99999999999999999999999999999
Q ss_pred CeEEecCCC-c-ccccccC---CCEEEeCCHHHHHHHHHHHHhCCCC---CCcHHHH---hcCCHHHHHHHHHHHHh
Q 016975 238 KIVVCANHP-S-NDFFKQF---PNCRTYDDRNGFVEATLKALAEEPA---LPTEAQR---HQLSWESATERFLQVAE 303 (379)
Q Consensus 238 ~PVI~t~~g-~-~e~i~~~---~~g~~~~~~~~l~~~i~~~l~~~~~---~~~~~~~---~~~sw~~~~~~~~~~~~ 303 (379)
+..|+.+.| + .|++.+. .+|++.++.++.+++|.+++..... .+++++| .+|+=....+.+...+.
T Consensus 381 lIpi~h~SgGP~lDIV~~~~G~~tGFla~t~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~~RFsE~~F~kd~~~~i~ 457 (465)
T KOG1387|consen 381 LIPIVHNSGGPLLDIVTPWDGETTGFLAPTDEEYAEAILKIVKLNYDERNMMRRNARKSLARFGELKFDKDWENPIC 457 (465)
T ss_pred ceEEEeCCCCCceeeeeccCCccceeecCChHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhHHHHHHhHhHHHH
Confidence 999999994 4 7777643 7899999999999999999987655 2333333 45554444444444433
No 90
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.62 E-value=7.9e-15 Score=140.02 Aligned_cols=239 Identities=13% Similarity=0.022 Sum_probs=144.2
Q ss_pred ccccccCCCCCCcEEEEcCCcchhhhhcccccccccCcEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEE
Q 016975 19 GDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVI 98 (379)
Q Consensus 19 ~~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 98 (379)
..+.+++.+.+||+||++....+ |...+........|++...+... +. .. .... ++. ...+|.++
T Consensus 75 ~~~~~~l~~~kPdivi~~~~~~~-~~~~a~~a~~~~ip~i~~~~~~~--~~--~~----~~~~----~~~--~~~~d~i~ 139 (380)
T PRK00025 75 RRLKRRLLAEPPDVFIGIDAPDF-NLRLEKKLRKAGIPTIHYVSPSV--WA--WR----QGRA----FKI--AKATDHVL 139 (380)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCC-CHHHHHHHHHCCCCEEEEeCCch--hh--cC----chHH----HHH--HHHHhhhe
Confidence 35677788899999999753222 11101111122237766554321 11 00 0111 111 11248999
Q ss_pred EcChhhhhhhhc-cceee-cccCCCCc--cCccccHHHhhcCCCCCcceE-EEEE-ecccc-cCHHHHHHHHHHhHhhcC
Q 016975 99 RLSAATQEYANS-IICNV-HGVNPKFL--EIGKKKKEQQQNGTHAFAKGA-YYIG-KMVWS-KGYKELLELLDDHQKELA 171 (379)
Q Consensus 99 ~~S~~~~~~~~~-~i~~i-~gvd~~~~--~~~~~~~~~~~~~~~~~~~~i-l~vg-rl~~~-Kg~~~li~a~~~l~~~~~ 171 (379)
+.|+...+...+ ++... .|.+...+ ........+...+..++++.+ ++.| +.... ++.+.+++++..+.++.|
T Consensus 140 ~~~~~~~~~~~~~g~~~~~~G~p~~~~~~~~~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~ 219 (380)
T PRK00025 140 ALFPFEAAFYDKLGVPVTFVGHPLADAIPLLPDRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYP 219 (380)
T ss_pred eCCccCHHHHHhcCCCeEEECcCHHHhcccccChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999876655432 22222 34332111 111122222233334445554 4445 44443 557899999999987788
Q ss_pred CcEEEEEcC-CcChHHHHHHHHhc-CCeeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecC-----
Q 016975 172 GLEVDLYGN-GEDFNQIQEAAEKL-KIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCAN----- 244 (379)
Q Consensus 172 ~~~l~i~G~-g~~~~~l~~~~~~~-~l~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~----- 244 (379)
+++++++|. ++..+++++..++. ++++.+.. .+..++|+.||++|.+| |.+++|||+||+|||++.
T Consensus 220 ~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~aDl~v~~s-----G~~~lEa~a~G~PvI~~~~~~~~ 292 (380)
T PRK00025 220 DLRFVLPLVNPKRREQIEEALAEYAGLEVTLLD--GQKREAMAAADAALAAS-----GTVTLELALLKVPMVVGYKVSPL 292 (380)
T ss_pred CeEEEEecCChhhHHHHHHHHhhcCCCCeEEEc--ccHHHHHHhCCEEEECc-----cHHHHHHHHhCCCEEEEEccCHH
Confidence 999999986 56677788877777 66666653 23348999999999998 788889999999999872
Q ss_pred ------------CCc-ccccccCC--CEEEeC--CHHHHHHHHHHHHhCCCC
Q 016975 245 ------------HPS-NDFFKQFP--NCRTYD--DRNGFVEATLKALAEEPA 279 (379)
Q Consensus 245 ------------~g~-~e~i~~~~--~g~~~~--~~~~l~~~i~~~l~~~~~ 279 (379)
.++ .+++.+.. .+++.+ |++++++++.++++|+..
T Consensus 293 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~ 344 (380)
T PRK00025 293 TFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLARALLPLLADGAR 344 (380)
T ss_pred HHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHHHHHHHhcCHHH
Confidence 222 45555543 335555 899999999999998654
No 91
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.60 E-value=2.2e-14 Score=146.80 Aligned_cols=186 Identities=11% Similarity=0.092 Sum_probs=131.9
Q ss_pred cccCCCCccCccccH-------HHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhhcCCcE--EEEE-------c
Q 016975 116 HGVNPKFLEIGKKKK-------EQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLE--VDLY-------G 179 (379)
Q Consensus 116 ~gvd~~~~~~~~~~~-------~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~--l~i~-------G 179 (379)
-|||++.|....... ..+.. ..++++|+.++|+++.||+...+.|++.+.+++|+++ ++++ |
T Consensus 333 iGID~~~f~~~~~~~~v~~~~~~lr~~--~~g~kiIlgVDRLD~~KGI~~kL~AfE~fL~~~Pe~r~kVVLvQIa~psr~ 410 (934)
T PLN03064 333 IGIDSDRFIRALETPQVQQHIKELKER--FAGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPEWRDKVVLLQIAVPTRT 410 (934)
T ss_pred CEEcHHHHHHHhcChhHHHHHHHHHHH--hCCceEEEEeeccccccCHHHHHHHHHHHHHhCccccCCEEEEEEcCCCCC
Confidence 599988775422111 11111 2246799999999999999999999999888888764 5555 4
Q ss_pred CCcChHHHHHHH----HhcC----C----eeEEe-cCCCCHH--HHHhhcCEEEecCCCCcchhHHHHHHHc-----CCe
Q 016975 180 NGEDFNQIQEAA----EKLK----I----VVRVY-PGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAM-----GKI 239 (379)
Q Consensus 180 ~g~~~~~l~~~~----~~~~----l----~v~~~-g~~~~~~--~~~~~~dv~v~ps~~E~~~~~~~EAma~-----G~P 239 (379)
++++..++++.+ .+.+ . .+.++ ..++.++ .+|+.||++++||..||++++..||||| |.+
T Consensus 411 ~v~eY~~l~~~V~~~V~rIN~~fg~~~w~Pv~~~~~~l~~eeL~AlY~~ADV~lvTslrDGmNLva~Eyva~~~~~~GvL 490 (934)
T PLN03064 411 DVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDSKKGVL 490 (934)
T ss_pred CcHHHHHHHHHHHHHHHHHhhhccCCCcceEEEeccCCCHHHHHHHHHhCCEEEeCccccccCchHHHHHHhhcCCCCCe
Confidence 555555544433 2222 1 23433 4467777 9999999999999999999999999999 555
Q ss_pred EEecCC-CcccccccCCCEEEeC--CHHHHHHHHHHHHhCCCC-C--CcH---HHHhcCCHHHHHHHHHHHHhccc
Q 016975 240 VVCANH-PSNDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA-L--PTE---AQRHQLSWESATERFLQVAELDQ 306 (379)
Q Consensus 240 VI~t~~-g~~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~~-~--~~~---~~~~~~sw~~~~~~~~~~~~~~~ 306 (379)
|+ |.. |+.+.+ +..+++++ |.++++++|.++++.+.. + ... +....++|..-++.+++....+.
T Consensus 491 IL-SEfaGaa~~L--~~~AllVNP~D~~~vA~AI~~AL~M~~~Er~~r~~~~~~~V~~~d~~~Wa~~fl~~L~~~~ 563 (934)
T PLN03064 491 IL-SEFAGAAQSL--GAGAILVNPWNITEVAASIAQALNMPEEEREKRHRHNFMHVTTHTAQEWAETFVSELNDTV 563 (934)
T ss_pred EE-eCCCchHHHh--CCceEEECCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHH
Confidence 55 777 777777 33478877 999999999999995544 1 111 22278899988888877666543
No 92
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=99.57 E-value=3e-14 Score=139.45 Aligned_cols=155 Identities=13% Similarity=0.125 Sum_probs=128.7
Q ss_pred eEEEEE--ecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcCh---HHHHHHHHhcC----------------------
Q 016975 143 GAYYIG--KMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDF---NQIQEAAEKLK---------------------- 195 (379)
Q Consensus 143 ~il~vg--rl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~---~~l~~~~~~~~---------------------- 195 (379)
.+++++ |+ +.|.++.+|+++.++..+.|+++|.+.|.+.+. ..+++.+++++
T Consensus 321 ~~I~v~idrL-~ek~~~~~I~av~~~~~~~p~~~L~~~gy~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (519)
T TIGR03713 321 TEIGFWIDGL-SDEELQQILQQLLQYILKNPDYELKILTYNNDNDITQLLEDILEQINEEYNQDKNFFSLSEQDENQPIL 399 (519)
T ss_pred eEEEEEcCCC-ChHHHHHHHHHHHHHHhhCCCeEEEEEEecCchhHHHHHHHHHHHHHhhhchhhhccccchhhhhhhcc
Confidence 688888 99 999999999999999999999999999976532 44544444432
Q ss_pred ---------CeeEEecCCCCHH--HHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCcccccccCCCEEEeCCHH
Q 016975 196 ---------IVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRN 264 (379)
Q Consensus 196 ---------l~v~~~g~~~~~~--~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~~e~i~~~~~g~~~~~~~ 264 (379)
..+.|.|...+.+ +.|..+.++|.+|..|+|+ +.+||++.|+|+| +.|+.++|.++.||++++|.+
T Consensus 400 ~~~~~~~~~~~v~f~gy~~e~dl~~~~~~arl~id~s~~eg~~-~~ieAiS~GiPqI--nyg~~~~V~d~~NG~li~d~~ 476 (519)
T TIGR03713 400 QTDEEQKEKERIAFTTLTNEEDLISALDKLRLIIDLSKEPDLY-TQISGISAGIPQI--NKVETDYVEHNKNGYIIDDIS 476 (519)
T ss_pred cchhhcccccEEEEEecCCHHHHHHHHhhheEEEECCCCCChH-HHHHHHHcCCCee--ecCCceeeEcCCCcEEeCCHH
Confidence 3566668777444 9999999999999999999 9999999999999 568899999999999999999
Q ss_pred HHHHHHHHHHhCCCC--CCcH---HHHhcCCHHHHHHHHHHH
Q 016975 265 GFVEATLKALAEEPA--LPTE---AQRHQLSWESATERFLQV 301 (379)
Q Consensus 265 ~l~~~i~~~l~~~~~--~~~~---~~~~~~sw~~~~~~~~~~ 301 (379)
+|++++..+|.++.. .++. +..+.||-+++.+++.++
T Consensus 477 ~l~~al~~~L~~~~~wn~~~~~sy~~~~~yS~~~i~~kW~~~ 518 (519)
T TIGR03713 477 ELLKALDYYLDNLKNWNYSLAYSIKLIDDYSSENIIERLNEL 518 (519)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh
Confidence 999999999998754 2222 333788888888887664
No 93
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=99.53 E-value=3.2e-12 Score=126.91 Aligned_cols=166 Identities=10% Similarity=0.087 Sum_probs=127.9
Q ss_pred CCCcceEEEEEecccccCHHHHHHHHHHhHh--hc--CCcEEEEEcCCcC--------hHHHHHHHHh--cCCeeEEecC
Q 016975 138 HAFAKGAYYIGKMVWSKGYKELLELLDDHQK--EL--AGLEVDLYGNGED--------FNQIQEAAEK--LKIVVRVYPG 203 (379)
Q Consensus 138 ~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~--~~--~~~~l~i~G~g~~--------~~~l~~~~~~--~~l~v~~~g~ 203 (379)
.++.+.+++++|+...||.+.++.++.++.+ .. .+++|++.|.+.. .+.+.+.+++ ...++.|+..
T Consensus 386 dpd~~~ig~v~Rl~~yKr~dLil~~i~~l~~i~~~~~~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~~~kv~f~~~ 465 (601)
T TIGR02094 386 DPDVLTIGFARRFATYKRADLIFRDLERLARILNNPERPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEFRGRIVFLEN 465 (601)
T ss_pred CCCCcEEEEEEcchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCcccchHHHHHHHHHHHHhcccCCCCEEEEcC
Confidence 4567899999999999999999999988864 22 3699999997763 3445555655 4447777766
Q ss_pred CCCHH--HHHhhcCEEEe-cCC-CCcchhHHHHHHHcCCeEEecCCCc-ccccccCCCEEEeC--------------CHH
Q 016975 204 RDHAD--LIFHDYKVFLN-PST-TDVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--------------DRN 264 (379)
Q Consensus 204 ~~~~~--~~~~~~dv~v~-ps~-~E~~~~~~~EAma~G~PVI~t~~g~-~e~i~~~~~g~~~~--------------~~~ 264 (379)
.+..- .++..||++++ ||. +|+.|+.=+=||..|.+.+++..|. .|.. ++.||+.+. |++
T Consensus 466 Yd~~lA~~i~aG~Dv~L~~Psr~~EacGtsqMka~~nGgL~~sv~DG~~~E~~-~~~nGf~f~~~~~~~~~~~~d~~da~ 544 (601)
T TIGR02094 466 YDINLARYLVSGVDVWLNNPRRPLEASGTSGMKAAMNGVLNLSILDGWWGEGY-DGDNGWAIGDGEEYDDEEEQDRLDAE 544 (601)
T ss_pred CCHHHHHHHhhhheeEEeCCCCCcCCchHHHHHHHHcCCceeecccCcccccC-CCCcEEEECCCccccccccccCCCHH
Confidence 55544 99999999999 999 9999999999999999999999987 4444 678998764 678
Q ss_pred HHHHHHHHHH-----hCCCC-------CCcHHHH-h---cCCHHHHHHHHHHHHhc
Q 016975 265 GFVEATLKAL-----AEEPA-------LPTEAQR-H---QLSWESATERFLQVAEL 304 (379)
Q Consensus 265 ~l~~~i~~~l-----~~~~~-------~~~~~~~-~---~~sw~~~~~~~~~~~~~ 304 (379)
+|.++|.+.+ +++.. .+.+++. . .|||++++++|.+.|-.
T Consensus 545 ~l~~~L~~ai~~~yy~~~~~~~p~~W~~~~k~am~~~~~~fsw~r~a~~Y~~~yy~ 600 (601)
T TIGR02094 545 ALYDLLENEVIPLYYDRDEKGIPADWVEMMKESIATIAPRFSTNRMVREYVDKFYL 600 (601)
T ss_pred HHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHhccCCCCCHHHHHHHHHHHhCC
Confidence 8999997766 22221 2222333 3 69999999999998863
No 94
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.51 E-value=3.5e-13 Score=128.46 Aligned_cols=203 Identities=11% Similarity=0.018 Sum_probs=123.0
Q ss_pred cccccCCCCCCcEEEEcCCcchhhhhcccccccccC-cEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEE
Q 016975 20 DISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVI 98 (379)
Q Consensus 20 ~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~-~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 98 (379)
.+.+++++++||+|++.+...+.+.. + ...+..+ |++..+. ++...+.+. -.+.+.+ +||+++
T Consensus 80 ~~~~~l~~~kPd~vi~~g~~~~~~~~-a-~aa~~~gip~v~~i~---P~~waw~~~------~~r~l~~-----~~d~v~ 143 (385)
T TIGR00215 80 EVVQLAKQAKPDLLVGIDAPDFNLTK-E-LKKKDPGIKIIYYIS---PQVWAWRKW------RAKKIEK-----ATDFLL 143 (385)
T ss_pred HHHHHHHhcCCCEEEEeCCCCccHHH-H-HHHhhCCCCEEEEeC---CcHhhcCcc------hHHHHHH-----HHhHhh
Confidence 46677889999999997743333321 1 1222223 7764432 222211111 1222222 359999
Q ss_pred EcChhhhhhhhc-cce--ee-cccCCCCccC-ccccHHHhhcCCCCCcceEEEEE--eccc-ccCHHHHHHHHHHhHhhc
Q 016975 99 RLSAATQEYANS-IIC--NV-HGVNPKFLEI-GKKKKEQQQNGTHAFAKGAYYIG--KMVW-SKGYKELLELLDDHQKEL 170 (379)
Q Consensus 99 ~~S~~~~~~~~~-~i~--~i-~gvd~~~~~~-~~~~~~~~~~~~~~~~~~il~vg--rl~~-~Kg~~~li~a~~~l~~~~ 170 (379)
+.++...++... ++. .+ |++....... ......+...+..+++++|+++| |..+ .|++..+++++..+.+..
T Consensus 144 ~~~~~e~~~~~~~g~~~~~vGnPv~~~~~~~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~ 223 (385)
T TIGR00215 144 AILPFEKAFYQKKNVPCRFVGHPLLDAIPLYKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQE 223 (385)
T ss_pred ccCCCcHHHHHhcCCCEEEECCchhhhccccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhC
Confidence 999887665442 222 22 4443222211 12222233344445566776653 6666 789999999999998888
Q ss_pred CCcEEEEE-cCCcChHHHHHHHHhcCC--eeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 171 AGLEVDLY-GNGEDFNQIQEAAEKLKI--VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 171 ~~~~l~i~-G~g~~~~~l~~~~~~~~l--~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
|++++++. +++...+.+++..+..+. .+.+++. +...+|+.||++|.+| |.+++|||+||+|+|.+.-
T Consensus 224 p~~~~vi~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~l~aADl~V~~S-----Gt~tlEa~a~G~P~Vv~yk 294 (385)
T TIGR00215 224 PDLRRVLPVVNFKRRLQFEQIKAEYGPDLQLHLIDG--DARKAMFAADAALLAS-----GTAALEAALIKTPMVVGYR 294 (385)
T ss_pred CCeEEEEEeCCchhHHHHHHHHHHhCCCCcEEEECc--hHHHHHHhCCEEeecC-----CHHHHHHHHcCCCEEEEEc
Confidence 89988765 455556666666665543 4444433 3347999999999999 7788899999999998843
No 95
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=7.4e-12 Score=111.46 Aligned_cols=272 Identities=14% Similarity=0.113 Sum_probs=171.6
Q ss_pred CCCCcEEEEcCCcchhhhhccccccc-ccCcEEEEeccChHHHHHHhhcch--HHHHHHHHHHHHHHHHhcceEEEcChh
Q 016975 27 DEVADIAVLEEPEHLTWFHHGKRWKT-KFRYVVGIVHTNYLEYVKREKNGR--LQAFLLKYANSWLVDIYCHKVIRLSAA 103 (379)
Q Consensus 27 ~~~~DvV~~~~p~~~~~~~~~~~~~~-~~~~vv~~~h~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~vi~~S~~ 103 (379)
...+|++.+.+|..+........... +..+.+..+|+.-.........+. ..-.+.++.++++.+. +|.-+||+++
T Consensus 101 ~~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ysl~l~~~~g~~h~lV~l~~~~E~~fgk~-a~~nLcVT~A 179 (444)
T KOG2941|consen 101 LRPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYSLQLKLKLGFQHPLVRLVRWLEKYFGKL-ADYNLCVTKA 179 (444)
T ss_pred ccCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHHHHHHhhcCCCCchHHHHHHHHHHhhcc-cccchhhHHH
Confidence 57899999998876643321112211 112788899975443111112211 1112333334432222 7999999999
Q ss_pred hhhhhhcc--c---eeecccCC--------------------CCcc---CccccHH----HhhcC-----CCCCcc-eEE
Q 016975 104 TQEYANSI--I---CNVHGVNP--------------------KFLE---IGKKKKE----QQQNG-----THAFAK-GAY 145 (379)
Q Consensus 104 ~~~~~~~~--i---~~i~gvd~--------------------~~~~---~~~~~~~----~~~~~-----~~~~~~-~il 145 (379)
+++....+ + .+.+--.+ ..|. +..+... ..+.. ..+..+ .++
T Consensus 180 Mr~dL~qnWgi~ra~v~YDrPps~~~~l~~~H~lf~~l~~d~~~f~ar~~q~~~~~~taf~~k~~s~~v~~~~~~pallv 259 (444)
T KOG2941|consen 180 MREDLIQNWGINRAKVLYDRPPSKPTPLDEQHELFMKLAGDHSPFRAREPQDKALERTAFTKKDASGDVQLLPERPALLV 259 (444)
T ss_pred HHHHHHHhcCCceeEEEecCCCCCCCchhHHHHHHhhhccccchhhhcccccchhhhhhHhhhcccchhhhccCCCeEEE
Confidence 88544322 1 11111111 0110 0000000 00000 012222 344
Q ss_pred EEEecccccCHHHHHHHHHHhHh-------hcCCcEEEEEcCCcChHHHHHHHHhcCC-eeEEe-cCCCCHH--HHHhhc
Q 016975 146 YIGKMVWSKGYKELLELLDDHQK-------ELAGLEVDLYGNGEDFNQIQEAAEKLKI-VVRVY-PGRDHAD--LIFHDY 214 (379)
Q Consensus 146 ~vgrl~~~Kg~~~li~a~~~l~~-------~~~~~~l~i~G~g~~~~~l~~~~~~~~l-~v~~~-g~~~~~~--~~~~~~ 214 (379)
.-....+..++..|++|+....+ ..|++-++|.|.||.++...+.+++.++ ++.+. .++.-++ .++..|
T Consensus 260 sSTswTpDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITGKGPlkE~Y~~~I~~~~~~~v~~~tpWL~aEDYP~ll~sa 339 (444)
T KOG2941|consen 260 SSTSWTPDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITGKGPLKEKYSQEIHEKNLQHVQVCTPWLEAEDYPKLLASA 339 (444)
T ss_pred ecCCCCCcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcCCCchhHHHHHHHHHhcccceeeeecccccccchhHhhcc
Confidence 44467899999999999985422 2478888899999999999999998887 77776 5665555 888999
Q ss_pred CEEE--ecCCC-CcchhHHHHHHHcCCeEEecCCCc-ccccccCCCEEEeCCHHHHHHHHHHHHhCCCC------CCcHH
Q 016975 215 KVFL--NPSTT-DVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYDDRNGFVEATLKALAEEPA------LPTEA 284 (379)
Q Consensus 215 dv~v--~ps~~-E~~~~~~~EAma~G~PVI~t~~g~-~e~i~~~~~g~~~~~~~~l~~~i~~~l~~~~~------~~~~~ 284 (379)
|+.| .+|.+ =..||++++...||+||+|-+..+ .|.+.+++||++++|.+++++.+..+.++-+. ++.++
T Consensus 340 DlGVcLHtSSSGLDLPMKVVDMFGcglPvcA~~fkcl~ELVkh~eNGlvF~Ds~eLa~ql~~lf~~fp~~a~~l~~lkkn 419 (444)
T KOG2941|consen 340 DLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVNFKCLDELVKHGENGLVFEDSEELAEQLQMLFKNFPDNADELNQLKKN 419 (444)
T ss_pred ccceEeeecCcccCcchhHHHhhcCCCceeeecchhHHHHHhcCCCceEeccHHHHHHHHHHHHhcCCCCHHHHHHHHHh
Confidence 7765 45544 468999999999999999999977 99999999999999999999999999986554 22222
Q ss_pred HH--hcCCHHHHHHHHH
Q 016975 285 QR--HQLSWESATERFL 299 (379)
Q Consensus 285 ~~--~~~sw~~~~~~~~ 299 (379)
.+ +.+.|+..-++..
T Consensus 420 ~~e~~e~RW~~~W~~~~ 436 (444)
T KOG2941|consen 420 LREEQELRWDESWERTA 436 (444)
T ss_pred hHHHHhhhHHHHHHHhh
Confidence 22 5677777666554
No 96
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=99.33 E-value=2.3e-12 Score=97.00 Aligned_cols=85 Identities=25% Similarity=0.348 Sum_probs=74.7
Q ss_pred EEEecCCCCcchhHHHHHHHcCCeEEecCC-CcccccccCCCEEEeCCHHHHHHHHHHHHhCCCC--CCcHHHH----hc
Q 016975 216 VFLNPSTTDVVCTTTAEALAMGKIVVCANH-PSNDFFKQFPNCRTYDDRNGFVEATLKALAEEPA--LPTEAQR----HQ 288 (379)
Q Consensus 216 v~v~ps~~E~~~~~~~EAma~G~PVI~t~~-g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~~~~~--~~~~~~~----~~ 288 (379)
+++||+..+++++.++|+||||+|||+++. +..+++.++..++.++|++++.+++..+++++.. .++++++ ++
T Consensus 1 i~Ln~~~~~~~~~r~~E~~a~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~el~~~i~~ll~~~~~~~~ia~~a~~~v~~~ 80 (92)
T PF13524_consen 1 INLNPSRSDGPNMRIFEAMACGTPVISDDSPGLREIFEDGEHIITYNDPEELAEKIEYLLENPEERRRIAKNARERVLKR 80 (92)
T ss_pred CEeeCCCCCCCchHHHHHHHCCCeEEECChHHHHHHcCCCCeEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999999999999999 4588898988999999999999999999998866 4555443 79
Q ss_pred CCHHHHHHHHHH
Q 016975 289 LSWESATERFLQ 300 (379)
Q Consensus 289 ~sw~~~~~~~~~ 300 (379)
|+|+..++++++
T Consensus 81 ~t~~~~~~~il~ 92 (92)
T PF13524_consen 81 HTWEHRAEQILE 92 (92)
T ss_pred CCHHHHHHHHHC
Confidence 999999999864
No 97
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=99.26 E-value=6.6e-11 Score=113.50 Aligned_cols=125 Identities=11% Similarity=0.275 Sum_probs=104.4
Q ss_pred ceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcC-hHHHHHHHHhcCCeeEEecC-CC-CHHHHHhhcCEEE
Q 016975 142 KGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPG-RD-HADLIFHDYKVFL 218 (379)
Q Consensus 142 ~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~-~~-~~~~~~~~~dv~v 218 (379)
..++.++. +..|++++.+.++.|+++|.| |.+.+ ...|.++ .+. .++.++.+ .+ ..+++|..||+++
T Consensus 283 ~~~l~~t~-------s~~I~~i~~Lv~~lPd~~f~I-ga~te~s~kL~~L-~~y-~nvvly~~~~~~~l~~ly~~~dlyL 352 (438)
T TIGR02919 283 KQALILTN-------SDQIEHLEEIVQALPDYHFHI-AALTEMSSKLMSL-DKY-DNVKLYPNITTQKIQELYQTCDIYL 352 (438)
T ss_pred ccEEEECC-------HHHHHHHHHHHHhCCCcEEEE-EecCcccHHHHHH-Hhc-CCcEEECCcChHHHHHHHHhccEEE
Confidence 35777772 899999999999999999999 87777 6777777 555 47777755 44 4449999999999
Q ss_pred ecCCCCcchhHHHHHHHcCCeEEecCC--CcccccccCCCEEEeC--CHHHHHHHHHHHHhCCCC
Q 016975 219 NPSTTDVVCTTTAEALAMGKIVVCANH--PSNDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA 279 (379)
Q Consensus 219 ~ps~~E~~~~~~~EAma~G~PVI~t~~--g~~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~~ 279 (379)
..|..|++++++.||++.|+|||+.+. |..+++.+ |.+++ ++++++++|.++++++..
T Consensus 353 din~~e~~~~al~eA~~~G~pI~afd~t~~~~~~i~~---g~l~~~~~~~~m~~~i~~lL~d~~~ 414 (438)
T TIGR02919 353 DINHGNEILNAVRRAFEYNLLILGFEETAHNRDFIAS---ENIFEHNEVDQLISKLKDLLNDPNQ 414 (438)
T ss_pred EccccccHHHHHHHHHHcCCcEEEEecccCCcccccC---CceecCCCHHHHHHHHHHHhcCHHH
Confidence 999999999999999999999999999 56777777 55666 999999999999988643
No 98
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=99.09 E-value=3.2e-09 Score=102.62 Aligned_cols=98 Identities=13% Similarity=0.088 Sum_probs=65.3
Q ss_pred HHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc-----cccccc-CCCE-EEeC----CHHHHHHHHHHHHhC-
Q 016975 209 LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQ-FPNC-RTYD----DRNGFVEATLKALAE- 276 (379)
Q Consensus 209 ~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-----~e~i~~-~~~g-~~~~----~~~~l~~~i~~~l~~- 276 (379)
+++..||+.|+||++|+||.|.+|+.++|+|.|+|+..+ .+.+.+ ...| .+++ |.++.++.|.+.+.+
T Consensus 465 dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~~GV~VvdR~~~n~~e~v~~la~~l~~f 544 (633)
T PF05693_consen 465 DFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIEDPEEYGVYVVDRRDKNYDESVNQLADFLYKF 544 (633)
T ss_dssp HHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS-HHGGGTEEEE-SSSS-HHHHHHHHHHHHHHH
T ss_pred HHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhccCcCCcEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999933 334332 2334 5555 666666666555542
Q ss_pred ---CCC-C--Cc---HHHHhcCCHHHHHHHHHHHHhccc
Q 016975 277 ---EPA-L--PT---EAQRHQLSWESATERFLQVAELDQ 306 (379)
Q Consensus 277 ---~~~-~--~~---~~~~~~~sw~~~~~~~~~~~~~~~ 306 (379)
... + +. +...+..+|+.....|.++|+++.
T Consensus 545 ~~~~~rqri~~Rn~ae~LS~~~dW~~~~~yY~~Ay~~AL 583 (633)
T PF05693_consen 545 CQLSRRQRIIQRNRAERLSDLADWKNFGKYYEKAYDLAL 583 (633)
T ss_dssp HT--HHHHHHHHHHHHHHGGGGBHHHHCHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 221 1 11 122289999999999999999765
No 99
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=99.02 E-value=1.2e-08 Score=99.00 Aligned_cols=238 Identities=11% Similarity=0.070 Sum_probs=124.8
Q ss_pred CCcEEEEcCCcchhhhhcccccccccC--cEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEEEcChh-hh
Q 016975 29 VADIAVLEEPEHLTWFHHGKRWKTKFR--YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIRLSAA-TQ 105 (379)
Q Consensus 29 ~~DvV~~~~p~~~~~~~~~~~~~~~~~--~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~-~~ 105 (379)
.-|+|.+|+...+.... ...++.. ++..+.|..++........+.....+. .+ ..||.|=.-+.. ..
T Consensus 141 ~~D~VWVhDYhL~llP~---~LR~~~~~~~IgfFlHiPFPs~e~fr~lP~r~eiL~----gl---L~aDlIgFqt~~~~~ 210 (474)
T PF00982_consen 141 PGDLVWVHDYHLMLLPQ---MLRERGPDARIGFFLHIPFPSSEIFRCLPWREEILR----GL---LGADLIGFQTFEYAR 210 (474)
T ss_dssp TT-EEEEESGGGTTHHH---HHHHTT--SEEEEEE-S----HHHHTTSTTHHHHHH----HH---TTSSEEEESSHHHHH
T ss_pred CCCEEEEeCCcHHHHHH---HHHhhcCCceEeeEEecCCCCHHHHhhCCcHHHHHH----Hh---hcCCEEEEecHHHHH
Confidence 67899999865544332 2333333 778899998876654333332222111 11 114666555533 22
Q ss_pred hhhh---------------------ccceee---cccCCCCccCccc-------cHHHhhcCCCCCcceEEEEEeccccc
Q 016975 106 EYAN---------------------SIICNV---HGVNPKFLEIGKK-------KKEQQQNGTHAFAKGAYYIGKMVWSK 154 (379)
Q Consensus 106 ~~~~---------------------~~i~~i---~gvd~~~~~~~~~-------~~~~~~~~~~~~~~~il~vgrl~~~K 154 (379)
.+.. +.+.+. -|||++.|..... ....+... ..+.++|+-+.|+++.|
T Consensus 211 nFl~~~~r~lg~~~~~~~~~v~~~Gr~v~v~~~pigId~~~~~~~~~~~~v~~~~~~l~~~~-~~~~~ii~gvDrld~~k 289 (474)
T PF00982_consen 211 NFLSCCKRLLGLEVDSDRGTVEYNGRRVRVGVFPIGIDPDAFAQLARSPEVQERAEELREKF-KGKRKIIVGVDRLDYTK 289 (474)
T ss_dssp HHHHHHHHHS-EEEEETTE-EEETTEEEEEEE------HHHHHHHHH-S---HHHHHHHHHT-TT-SEEEEEE--B-GGG
T ss_pred HHHHHHHHHcCCcccCCCceEEECCEEEEEEEeeccCChHHHHhhccChHHHHHHHHHHHhc-CCCcEEEEEeccchhhc
Confidence 2221 011111 3888776632111 11111111 22247899999999999
Q ss_pred CHHHHHHHHHHhHhhcCC----cEEEEEcC--CcC-------hHHHHHHHHh----cCC----eeEEe-cCCCCHH--HH
Q 016975 155 GYKELLELLDDHQKELAG----LEVDLYGN--GED-------FNQIQEAAEK----LKI----VVRVY-PGRDHAD--LI 210 (379)
Q Consensus 155 g~~~li~a~~~l~~~~~~----~~l~i~G~--g~~-------~~~l~~~~~~----~~l----~v~~~-g~~~~~~--~~ 210 (379)
|+..=+.|++++.+++|+ +.|+-++. ..+ ..++.+.+.+ .+. .|.++ +.++.++ .+
T Consensus 290 Gi~~kl~Afe~fL~~~P~~~~kv~liQi~~psr~~~~~y~~~~~~v~~~v~~IN~~~g~~~~~PI~~~~~~~~~~~~~al 369 (474)
T PF00982_consen 290 GIPEKLRAFERFLERYPEYRGKVVLIQIAVPSREDVPEYQELRREVEELVGRINGKYGTPDWTPIIYIYRSLSFEELLAL 369 (474)
T ss_dssp -HHHHHHHHHHHHHH-GGGTTTEEEEEE--B-STTSHHHHHHHHHHHHHHHHHHHHH-BTTB-SEEEE-S---HHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcCccCcEEEEEEeeccCccchhHHHHHHHHHHHHHHHHhhcccCCceeEEEEecCCCHHHHHHH
Confidence 999999999999888764 66776662 222 2334444333 222 24555 6677777 99
Q ss_pred HhhcCEEEecCCCCcchhHHHHHHHcCCe----EEecCC-CcccccccCCCEEEeC--CHHHHHHHHHHHHhCCCC
Q 016975 211 FHDYKVFLNPSTTDVVCTTTAEALAMGKI----VVCANH-PSNDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA 279 (379)
Q Consensus 211 ~~~~dv~v~ps~~E~~~~~~~EAma~G~P----VI~t~~-g~~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~~ 279 (379)
|+.||+++.+|..+|..++..|+.+|... +|.|.. |+.+.+.++ +++++ |.++++++|.++++.+..
T Consensus 370 y~~aDv~lvTslrDGmNLva~Eyva~q~~~~GvLiLSefaGaa~~L~~~--al~VNP~d~~~~A~ai~~AL~M~~~ 443 (474)
T PF00982_consen 370 YRAADVALVTSLRDGMNLVAKEYVACQDDNPGVLILSEFAGAAEQLSEA--ALLVNPWDIEEVADAIHEALTMPPE 443 (474)
T ss_dssp HHH-SEEEE--SSBS--HHHHHHHHHS-TS--EEEEETTBGGGGT-TTS---EEE-TT-HHHHHHHHHHHHT--HH
T ss_pred HHhhhhEEecchhhccCCcceEEEEEecCCCCceEeeccCCHHHHcCCc--cEEECCCChHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999765 777777 777777653 36666 999999999999997654
No 100
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=98.98 E-value=2.8e-08 Score=95.36 Aligned_cols=163 Identities=15% Similarity=0.101 Sum_probs=117.7
Q ss_pred CcceEEEEEecccccCHHHHHHHHHHhHhhcCC----cEEEEEcC--CcC-------hHHHHHHHHhcCC--------ee
Q 016975 140 FAKGAYYIGKMVWSKGYKELLELLDDHQKELAG----LEVDLYGN--GED-------FNQIQEAAEKLKI--------VV 198 (379)
Q Consensus 140 ~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~----~~l~i~G~--g~~-------~~~l~~~~~~~~l--------~v 198 (379)
++++|+-+.|+++-||+..=+.|++.+.+++|+ +.|+-+.. ..+ ..++++.+.+.+- .+
T Consensus 254 ~~~lilgVDRLDytKGi~~rl~Afe~fL~~~Pe~~gkvvlvQia~psR~~v~~Y~~l~~~v~~~vg~INg~fg~~~w~Pv 333 (474)
T PRK10117 254 NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLETEAGRINGKYGQLGWTPL 333 (474)
T ss_pred CCeEEEEecccccccCHHHHHHHHHHHHHhChhhcCCEEEEEEcCCCCCccHHHHHHHHHHHHHHHHHHhccCCCCceeE
Confidence 466888899999999999999999999887764 66776652 222 2334444433221 24
Q ss_pred EEe-cCCCCHH--HHHhhcCEEEecCCCCcchhHHHHHHHcCC-----eEEecCC-CcccccccCCCEEEeC--CHHHHH
Q 016975 199 RVY-PGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGK-----IVVCANH-PSNDFFKQFPNCRTYD--DRNGFV 267 (379)
Q Consensus 199 ~~~-g~~~~~~--~~~~~~dv~v~ps~~E~~~~~~~EAma~G~-----PVI~t~~-g~~e~i~~~~~g~~~~--~~~~l~ 267 (379)
.++ ..++..+ .+|+.||+++.++..+|..++..|+.||-. ..|.|.. |+.+.+.+ .++++ |.++++
T Consensus 334 ~y~~~~~~~~~l~alyr~ADv~lVTplRDGMNLVAkEyva~q~~~~~GvLILSefAGaA~~L~~---AllVNP~d~~~~A 410 (474)
T PRK10117 334 YYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANELTS---ALIVNPYDRDEVA 410 (474)
T ss_pred EEecCCCCHHHHHHHHHhccEEEecccccccccccchheeeecCCCCccEEEecccchHHHhCC---CeEECCCCHHHHH
Confidence 444 5577777 999999999999999999999999999965 3788888 77777743 46777 999999
Q ss_pred HHHHHHHhCCCCC----CcH--HHHhcCCHHHHHHHHHHHHhcc
Q 016975 268 EATLKALAEEPAL----PTE--AQRHQLSWESATERFLQVAELD 305 (379)
Q Consensus 268 ~~i~~~l~~~~~~----~~~--~~~~~~sw~~~~~~~~~~~~~~ 305 (379)
++|.++++.+... +.. .....++-..=++.+++.....
T Consensus 411 ~Ai~~AL~Mp~~Er~~R~~~l~~~v~~~dv~~W~~~fL~~L~~~ 454 (474)
T PRK10117 411 AALDRALTMPLAERISRHAEMLDVIVKNDINHWQECFISDLKQI 454 (474)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHh
Confidence 9999999987651 111 1114555555566666655543
No 101
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=98.84 E-value=6.6e-08 Score=98.29 Aligned_cols=167 Identities=13% Similarity=0.104 Sum_probs=121.6
Q ss_pred CCCcceEEEEEecccccCHHHHHHHHHHhHhhc----CCcEEEEEcCCcC--------hHHHHHHHH--hcCCeeEEecC
Q 016975 138 HAFAKGAYYIGKMVWSKGYKELLELLDDHQKEL----AGLEVDLYGNGED--------FNQIQEAAE--KLKIVVRVYPG 203 (379)
Q Consensus 138 ~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~----~~~~l~i~G~g~~--------~~~l~~~~~--~~~l~v~~~g~ 203 (379)
.++.++|+|+.|+...|+.+.++..+.++.+-. .+++|+++|.+.. ...+.+.++ +...++.|+..
T Consensus 475 dpd~ltigfarRfa~YKR~~Lil~dl~rl~~il~~~~~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~~~kVvfle~ 554 (778)
T cd04299 475 DPNVLTIGFARRFATYKRATLLLRDPERLKRLLNDPERPVQFIFAGKAHPADEPGKELIQEIVEFSRRPEFRGRIVFLED 554 (778)
T ss_pred CCCccEEeeeecchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCccchHHHHHHHHHHHHHhCcCCCCcEEEEcC
Confidence 355668999999999999999999988875411 3599999997653 123444444 23336777766
Q ss_pred CCCHH--HHHhhcCEEEecCC--CCcchhHHHHHHHcCCeEEecCCCc-ccccccCCCEEEeCC--------------HH
Q 016975 204 RDHAD--LIFHDYKVFLNPST--TDVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYDD--------------RN 264 (379)
Q Consensus 204 ~~~~~--~~~~~~dv~v~ps~--~E~~~~~~~EAma~G~PVI~t~~g~-~e~i~~~~~g~~~~~--------------~~ 264 (379)
.+-.- .++..||+++|||+ .|+.|+.=+=||.-|.+-+++-.|- .|.. ++.||+.+.+ .+
T Consensus 555 Yd~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlDGww~E~~-~g~nGwaig~~~~~~~~~~~d~~da~ 633 (778)
T cd04299 555 YDMALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLDGWWDEGY-DGENGWAIGDGDEYEDDEYQDAEEAE 633 (778)
T ss_pred CCHHHHHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeecccCcccccc-CCCCceEeCCCccccChhhcchhhHH
Confidence 55444 99999999999999 8999999999999999999999987 5554 7889988753 44
Q ss_pred HHHHHHHHHHh----CC-----CC---C-CcHHHH---hcCCHHHHHHHHHHHHhcc
Q 016975 265 GFVEATLKALA----EE-----PA---L-PTEAQR---HQLSWESATERFLQVAELD 305 (379)
Q Consensus 265 ~l~~~i~~~l~----~~-----~~---~-~~~~~~---~~~sw~~~~~~~~~~~~~~ 305 (379)
+|.+.|++.+- +. +. . |..... ..|||.+++++|.+-|...
T Consensus 634 ~Ly~~Le~~i~p~yy~r~~~g~p~~W~~~~k~sm~~~~p~fs~~Rmv~eY~~~~Y~p 690 (778)
T cd04299 634 ALYDLLENEVIPLFYDRDEGGYPPGWVAMMKHSMATLGPRFSAERMVREYVERFYLP 690 (778)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhHHH
Confidence 56666654333 32 11 1 222223 4899999999999866643
No 102
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=98.74 E-value=1.9e-07 Score=96.64 Aligned_cols=137 Identities=10% Similarity=0.050 Sum_probs=104.3
Q ss_pred CcceEEEEEecccccCHHHHHHHHHHhHhhcCC----cEEEEEcC-----CcChHH----HHHHHHh----cCC----ee
Q 016975 140 FAKGAYYIGKMVWSKGYKELLELLDDHQKELAG----LEVDLYGN-----GEDFNQ----IQEAAEK----LKI----VV 198 (379)
Q Consensus 140 ~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~----~~l~i~G~-----g~~~~~----l~~~~~~----~~l----~v 198 (379)
++++|+-+.|+++-||+..=+.|++++.+++|. +.|+-+.. +++..+ +.+.+.+ .+. .|
T Consensus 338 ~~~~ilgVDrlD~~KGi~~kl~A~e~~L~~~P~~~gkvvlvQia~psr~~~~~y~~~~~ev~~~v~rIN~~fg~~~~~Pv 417 (854)
T PLN02205 338 DRIMLLGVDDMDIFKGISLKLLAMEQLLMQHPEWQGKVVLVQIANPARGKGKDVKEVQAETHSTVKRINETFGKPGYDPI 417 (854)
T ss_pred CCEEEEEccCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCceE
Confidence 467899999999999999999999999988876 45665552 233333 3333333 221 34
Q ss_pred EEe-cCCCCHH--HHHhhcCEEEecCCCCcchhHHHHHHHcCC-------------------eEEecCC-CcccccccCC
Q 016975 199 RVY-PGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGK-------------------IVVCANH-PSNDFFKQFP 255 (379)
Q Consensus 199 ~~~-g~~~~~~--~~~~~~dv~v~ps~~E~~~~~~~EAma~G~-------------------PVI~t~~-g~~e~i~~~~ 255 (379)
.++ ..++..+ .+|+.||+++.++..+|..++..|+.+|.. ..|.|.. |+...+..
T Consensus 418 ~~~~~~~~~~e~~aly~~ADv~lVT~lRDGMNLva~Eyia~~~~~~~~~~~~~~~~~~~~~gvLiLSEfaGaa~~L~~-- 495 (854)
T PLN02205 418 VLIDAPLKFYERVAYYVVAECCLVTAVRDGMNLIPYEYIISRQGNEKLDKLLGLEPSTPKKSMLVVSEFIGCSPSLSG-- 495 (854)
T ss_pred EEEecCCCHHHHHHHHHhccEEEeccccccccccchheeEEccCccccccccccccccCCCCceEeeeccchhHHhCc--
Confidence 554 5677777 999999999999999999999999999854 3677777 77666642
Q ss_pred CEEEeC--CHHHHHHHHHHHHhCCCC
Q 016975 256 NCRTYD--DRNGFVEATLKALAEEPA 279 (379)
Q Consensus 256 ~g~~~~--~~~~l~~~i~~~l~~~~~ 279 (379)
.++++ |.++++++|.++++.+..
T Consensus 496 -Ai~VNP~d~~~~a~ai~~AL~m~~~ 520 (854)
T PLN02205 496 -AIRVNPWNIDAVADAMDSALEMAEP 520 (854)
T ss_pred -CeEECCCCHHHHHHHHHHHHcCCHH
Confidence 47777 999999999999998765
No 103
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=98.73 E-value=2.1e-07 Score=89.08 Aligned_cols=177 Identities=15% Similarity=0.039 Sum_probs=109.8
Q ss_pred HHHhcceEEEcChhhhhhhhc-cceee---cccCCCCccCccccHHHhhcCCCCCcceEEEE-E-e-cccccCHHHHHHH
Q 016975 90 VDIYCHKVIRLSAATQEYANS-IICNV---HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYI-G-K-MVWSKGYKELLEL 162 (379)
Q Consensus 90 ~~~~~d~vi~~S~~~~~~~~~-~i~~i---~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~v-g-r-l~~~Kg~~~li~a 162 (379)
...+|+.|++..+...++..+ ++... |-+-........ . ...++.++++.+ | | -...+++..++++
T Consensus 157 ~~~~a~~v~~~~~~t~~~l~~~g~k~~~vGnPv~d~l~~~~~-~------~l~~~~~~lllLpGSR~ae~~~~lp~~l~a 229 (396)
T TIGR03492 157 RSRRCLAVFVRDRLTARDLRRQGVRASYLGNPMMDGLEPPER-K------PLLTGRFRIALLPGSRPPEAYRNLKLLLRA 229 (396)
T ss_pred hchhhCEEeCCCHHHHHHHHHCCCeEEEeCcCHHhcCccccc-c------ccCCCCCEEEEECCCCHHHHHccHHHHHHH
Confidence 334478888887777765543 33332 322222211111 0 122233444444 4 3 3445788899999
Q ss_pred HHHhHhhcCCcEEEEEc-CCcChHHHHHHHHhcCCe----------------eEEecCCCCHHHHHhhcCEEEecCCCCc
Q 016975 163 LDDHQKELAGLEVDLYG-NGEDFNQIQEAAEKLKIV----------------VRVYPGRDHADLIFHDYKVFLNPSTTDV 225 (379)
Q Consensus 163 ~~~l~~~~~~~~l~i~G-~g~~~~~l~~~~~~~~l~----------------v~~~g~~~~~~~~~~~~dv~v~ps~~E~ 225 (379)
+..+.++ +++.+++.- ++.+.+.+++...+.+.. +.+.....+..++|+.||++|..|
T Consensus 230 l~~L~~~-~~~~~v~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADlvI~rS---- 304 (396)
T TIGR03492 230 LEALPDS-QPFVFLAAIVPSLSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADLGIAMA---- 304 (396)
T ss_pred HHHHhhC-CCeEEEEEeCCCCCHHHHHHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCEEEECc----
Confidence 9999765 677777643 455667777766654443 455555555559999999999885
Q ss_pred chhHHHHHHHcCCeEEecCC-Cc---cccccc-----CCCEEEeC-CHHHHHHHHHHHHhCCCC
Q 016975 226 VCTTTAEALAMGKIVVCANH-PS---NDFFKQ-----FPNCRTYD-DRNGFVEATLKALAEEPA 279 (379)
Q Consensus 226 ~~~~~~EAma~G~PVI~t~~-g~---~e~i~~-----~~~g~~~~-~~~~l~~~i~~~l~~~~~ 279 (379)
|.+..|++++|+|+|.... +. ..++.. +....+.+ +++.+++++.++++|+..
T Consensus 305 -Gt~T~E~a~lg~P~Ilip~~~~q~na~~~~~~~~l~g~~~~l~~~~~~~l~~~l~~ll~d~~~ 367 (396)
T TIGR03492 305 -GTATEQAVGLGKPVIQLPGKGPQFTYGFAEAQSRLLGGSVFLASKNPEQAAQVVRQLLADPEL 367 (396)
T ss_pred -CHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhhHhhcCCEEecCCCCHHHHHHHHHHHHcCHHH
Confidence 5666999999999999984 22 122232 22234445 889999999999887543
No 104
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=98.70 E-value=2.4e-07 Score=86.68 Aligned_cols=250 Identities=16% Similarity=0.144 Sum_probs=143.3
Q ss_pred ccccccCCCCCCcEEEEcCCcchhhhhccccccccc-CcEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceE
Q 016975 19 GDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKF-RYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKV 97 (379)
Q Consensus 19 ~~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~-~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 97 (379)
.+..+++++++||+|+........... ...... .|++....+..+. ..++++.++ ++.|
T Consensus 81 ~~a~~il~~~kPd~vig~Ggyvs~P~~---~Aa~~~~iPv~ihEqn~~~G------------~ank~~~~~-----a~~V 140 (357)
T COG0707 81 LQARKILKKLKPDVVIGTGGYVSGPVG---IAAKLLGIPVIIHEQNAVPG------------LANKILSKF-----AKKV 140 (357)
T ss_pred HHHHHHHHHcCCCEEEecCCccccHHH---HHHHhCCCCEEEEecCCCcc------------hhHHHhHHh-----hcee
Confidence 456678889999999996544433221 111112 3765555543322 222333333 3444
Q ss_pred EEcChhhhhhhh-ccceee-cccCCCCccCccccHHHhhcCCCCCcceEEEEE-ecccccCHHHHH-HHHHHhHhhcCCc
Q 016975 98 IRLSAATQEYAN-SIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIG-KMVWSKGYKELL-ELLDDHQKELAGL 173 (379)
Q Consensus 98 i~~S~~~~~~~~-~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vg-rl~~~Kg~~~li-~a~~~l~~~~~~~ 173 (379)
.+--.....+.. .++... +.|..+++. ...... +..... ++++|+.+| +....+ +..++ +++..+.+ ++
T Consensus 141 ~~~f~~~~~~~~~~~~~~tG~Pvr~~~~~-~~~~~~-~~~~~~-~~~~ilV~GGS~Ga~~-ln~~v~~~~~~l~~---~~ 213 (357)
T COG0707 141 ASAFPKLEAGVKPENVVVTGIPVRPEFEE-LPAAEV-RKDGRL-DKKTILVTGGSQGAKA-LNDLVPEALAKLAN---RI 213 (357)
T ss_pred eeccccccccCCCCceEEecCcccHHhhc-cchhhh-hhhccC-CCcEEEEECCcchhHH-HHHHHHHHHHHhhh---Ce
Confidence 333332222222 222222 555555554 222111 111111 466777666 455554 44444 44444433 45
Q ss_pred EEEE-EcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCC-c----
Q 016975 174 EVDL-YGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHP-S---- 247 (379)
Q Consensus 174 ~l~i-~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g-~---- 247 (379)
+++. +|... .++++....+.+. +++.++.++-.++|+.||++|.=+ -++|+.|.+++|+|+|--..+ +
T Consensus 214 ~v~~~~G~~~-~~~~~~~~~~~~~-~~v~~f~~dm~~~~~~ADLvIsRa----Ga~Ti~E~~a~g~P~IliP~p~~~~~~ 287 (357)
T COG0707 214 QVIHQTGKND-LEELKSAYNELGV-VRVLPFIDDMAALLAAADLVISRA----GALTIAELLALGVPAILVPYPPGADGH 287 (357)
T ss_pred EEEEEcCcch-HHHHHHHHhhcCc-EEEeeHHhhHHHHHHhccEEEeCC----cccHHHHHHHhCCCEEEeCCCCCccch
Confidence 5554 44444 6777777777776 888899999999999999999543 578999999999999998873 2
Q ss_pred ----ccccccCCCEEEeC----CHHHHHHHHHHHHhCCCC--CCcHHHHhcCCHHHHHHHHHHHH
Q 016975 248 ----NDFFKQFPNCRTYD----DRNGFVEATLKALAEEPA--LPTEAQRHQLSWESATERFLQVA 302 (379)
Q Consensus 248 ----~e~i~~~~~g~~~~----~~~~l~~~i~~~l~~~~~--~~~~~~~~~~sw~~~~~~~~~~~ 302 (379)
...+.+...|.+.+ +++.+.+.|.++++++.. .|.++.+ ...-.+.++++.+..
T Consensus 288 Q~~NA~~l~~~gaa~~i~~~~lt~~~l~~~i~~l~~~~~~l~~m~~~a~-~~~~p~aa~~i~~~~ 351 (357)
T COG0707 288 QEYNAKFLEKAGAALVIRQSELTPEKLAELILRLLSNPEKLKAMAENAK-KLGKPDAAERIADLL 351 (357)
T ss_pred HHHHHHHHHhCCCEEEeccccCCHHHHHHHHHHHhcCHHHHHHHHHHHH-hcCCCCHHHHHHHHH
Confidence 12566666777776 477999999999887544 4444333 222333444444433
No 105
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=98.65 E-value=1.6e-06 Score=83.05 Aligned_cols=136 Identities=16% Similarity=0.181 Sum_probs=103.6
Q ss_pred cceEEEEEecccccCHHHHHHHHHHhHhhcC----CcEEEEEcCC--cChH-------HHHHHHHh----cCC----eeE
Q 016975 141 AKGAYYIGKMVWSKGYKELLELLDDHQKELA----GLEVDLYGNG--EDFN-------QIQEAAEK----LKI----VVR 199 (379)
Q Consensus 141 ~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~----~~~l~i~G~g--~~~~-------~l~~~~~~----~~l----~v~ 199 (379)
++.|+-+.|+++-||+..=+.|++++...+| ++.++-++.. .+.. +++..+.+ .|. .+.
T Consensus 282 ~kiivgvDRlDy~kGi~~rl~Afe~lL~~~Pe~~~kvvliQi~~pSr~~v~~y~~~~~~i~~~V~rIN~~fG~~~~~Pv~ 361 (486)
T COG0380 282 KKLIVGVDRLDYSKGIPQRLLAFERLLEEYPEWRGKVVLLQIAPPSREDVEEYQALRLQIEELVGRINGEFGSLSWTPVH 361 (486)
T ss_pred ceEEEEehhcccccCcHHHHHHHHHHHHhChhhhCceEEEEecCCCccccHHHHHHHHHHHHHHHHHHhhcCCCCcceeE
Confidence 7788889999999999999999999997776 4666666632 2222 22333322 221 344
Q ss_pred Ee-cCCCCHH--HHHhhcCEEEecCCCCcchhHHHHHHHcC----CeEEecCC-CcccccccCCCEEEeC--CHHHHHHH
Q 016975 200 VY-PGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMG----KIVVCANH-PSNDFFKQFPNCRTYD--DRNGFVEA 269 (379)
Q Consensus 200 ~~-g~~~~~~--~~~~~~dv~v~ps~~E~~~~~~~EAma~G----~PVI~t~~-g~~e~i~~~~~g~~~~--~~~~l~~~ 269 (379)
++ -.++..+ .+|+.+|+++.++..||..++..|+.||- =+.|-|.. |+...+.+ .++++ |.++++++
T Consensus 362 ~l~~~~~~~~l~al~~~aDv~lVtplrDGMNLvakEyVa~q~~~~G~LiLSeFaGaa~~L~~---AliVNP~d~~~va~a 438 (486)
T COG0380 362 YLHRDLDRNELLALYRAADVMLVTPLRDGMNLVAKEYVAAQRDKPGVLILSEFAGAASELRD---ALIVNPWDTKEVADA 438 (486)
T ss_pred EEeccCCHHHHHHHHhhhceeeeccccccccHHHHHHHHhhcCCCCcEEEeccccchhhhcc---CEeECCCChHHHHHH
Confidence 44 4466666 99999999999999999999999999984 37788888 77777766 37777 99999999
Q ss_pred HHHHHhCCCC
Q 016975 270 TLKALAEEPA 279 (379)
Q Consensus 270 i~~~l~~~~~ 279 (379)
|.++|+.+..
T Consensus 439 i~~AL~m~~e 448 (486)
T COG0380 439 IKRALTMSLE 448 (486)
T ss_pred HHHHhcCCHH
Confidence 9999997665
No 106
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.61 E-value=1.2e-06 Score=82.90 Aligned_cols=98 Identities=13% Similarity=0.144 Sum_probs=68.9
Q ss_pred eeEEecCCCCHH--HHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc-ccccccCCCEEEeC-CHHHHHHHHHH
Q 016975 197 VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD-DRNGFVEATLK 272 (379)
Q Consensus 197 ~v~~~g~~~~~~--~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-~e~i~~~~~g~~~~-~~~~l~~~i~~ 272 (379)
++.+.+.++..+ .+++.|+++|--| .| .+.||.++|+|||+- +. .|.+..+.|.+.+. |++++.+++.+
T Consensus 263 ~v~l~~~l~~~~~l~Ll~~a~~vitdS----Sg-gi~EA~~lg~Pvv~l--~~R~e~~~~g~nvl~vg~~~~~I~~a~~~ 335 (365)
T TIGR03568 263 NFRLFKSLGQERYLSLLKNADAVIGNS----SS-GIIEAPSFGVPTINI--GTRQKGRLRADSVIDVDPDKEEIVKAIEK 335 (365)
T ss_pred CEEEECCCChHHHHHHHHhCCEEEEcC----hh-HHHhhhhcCCCEEee--cCCchhhhhcCeEEEeCCCHHHHHHHHHH
Confidence 689999999999 9999999999433 23 338999999999954 44 56677777888777 99999999999
Q ss_pred HHhCCCCCCcHHHHhcCCHHHHHHHHHHH
Q 016975 273 ALAEEPALPTEAQRHQLSWESATERFLQV 301 (379)
Q Consensus 273 ~l~~~~~~~~~~~~~~~sw~~~~~~~~~~ 301 (379)
+++......-......|.....++++.++
T Consensus 336 ~~~~~~~~~~~~~~~pygdg~as~rI~~~ 364 (365)
T TIGR03568 336 LLDPAFKKSLKNVKNPYGDGNSSERIIEI 364 (365)
T ss_pred HhChHHHHHHhhCCCCCCCChHHHHHHHh
Confidence 54321100001112446666677776654
No 107
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.56 E-value=1e-05 Score=75.42 Aligned_cols=179 Identities=16% Similarity=0.096 Sum_probs=116.8
Q ss_pred ceEEEcChhhh-hhhhccceee-cccCCCCc-cCccccH----HHhhcCCCCCcceEEEEEecccccCHHH-HHHHHHHh
Q 016975 95 HKVIRLSAATQ-EYANSIICNV-HGVNPKFL-EIGKKKK----EQQQNGTHAFAKGAYYIGKMVWSKGYKE-LLELLDDH 166 (379)
Q Consensus 95 d~vi~~S~~~~-~~~~~~i~~i-~gvd~~~~-~~~~~~~----~~~~~~~~~~~~~il~vgrl~~~Kg~~~-li~a~~~l 166 (379)
|.|++-|+.-. ++..-+...+ .--+..+. .+..... ..+.....+ ++++++.|. ..|=++ ++++...+
T Consensus 179 ~li~aQse~D~~Rf~~LGa~~v~v~GNlKfd~~~~~~~~~~~~~~r~~l~~~-r~v~iaaST---H~GEeei~l~~~~~l 254 (419)
T COG1519 179 DLILAQSEEDAQRFRSLGAKPVVVTGNLKFDIEPPPQLAAELAALRRQLGGH-RPVWVAAST---HEGEEEIILDAHQAL 254 (419)
T ss_pred ceeeecCHHHHHHHHhcCCcceEEecceeecCCCChhhHHHHHHHHHhcCCC-CceEEEecC---CCchHHHHHHHHHHH
Confidence 89999996644 5554343333 11111111 1111111 112222222 667888777 555554 78999999
Q ss_pred HhhcCCcEEEEEcCCcC-hHHHHHHHHhcCCeeEEe--cCC--CCHH-----------HHHhhcCEEEec-CCCCcchhH
Q 016975 167 QKELAGLEVDLYGNGED-FNQIQEAAEKLKIVVRVY--PGR--DHAD-----------LIFHDYKVFLNP-STTDVVCTT 229 (379)
Q Consensus 167 ~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~--g~~--~~~~-----------~~~~~~dv~v~p-s~~E~~~~~ 229 (379)
++++||..++++=-.|+ ...+++++++.|+.+... |.. .+.+ .+|..+|+.+.- |..+--|--
T Consensus 255 ~~~~~~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN 334 (419)
T COG1519 255 KKQFPNLLLILVPRHPERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN 334 (419)
T ss_pred HhhCCCceEEEecCChhhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC
Confidence 99999998888887777 577889999998876544 211 2211 889999986654 666656677
Q ss_pred HHHHHHcCCeEEecCC-Cc-cc---ccccCCCEEEeCCHHHHHHHHHHHHhCC
Q 016975 230 TAEALAMGKIVVCANH-PS-ND---FFKQFPNCRTYDDRNGFVEATLKALAEE 277 (379)
Q Consensus 230 ~~EAma~G~PVI~t~~-g~-~e---~i~~~~~g~~~~~~~~l~~~i~~~l~~~ 277 (379)
++|++++|+|||.-.. -. .| .+.+.+.|+.++|.+.+..++..+++++
T Consensus 335 ~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~ga~~~v~~~~~l~~~v~~l~~~~ 387 (419)
T COG1519 335 PLEPAAFGTPVIFGPYTFNFSDIAERLLQAGAGLQVEDADLLAKAVELLLADE 387 (419)
T ss_pred hhhHHHcCCCEEeCCccccHHHHHHHHHhcCCeEEECCHHHHHHHHHHhcCCH
Confidence 9999999999999776 22 33 4556667899999777777777776663
No 108
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.54 E-value=1.1e-06 Score=82.53 Aligned_cols=205 Identities=15% Similarity=0.054 Sum_probs=119.3
Q ss_pred cccccCCCCCCcEEEEcCCcchhhhhcccccccccCc--EEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceE
Q 016975 20 DISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRY--VVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKV 97 (379)
Q Consensus 20 ~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~~--vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 97 (379)
++.+.+...+||++++-+...+++-. ++..++...+ ++.++--.. .. ++. .-.+.+.+. +|++
T Consensus 73 ~~~~~~~~~~pd~vIlID~pgFNlrl-ak~lk~~~~~~~viyYI~Pqv---WA-Wr~-----~R~~~i~~~-----~D~l 137 (373)
T PF02684_consen 73 KLVERIKEEKPDVVILIDYPGFNLRL-AKKLKKRGIPIKVIYYISPQV---WA-WRP-----GRAKKIKKY-----VDHL 137 (373)
T ss_pred HHHHHHHHcCCCEEEEeCCCCccHHH-HHHHHHhCCCceEEEEECCce---ee-eCc-----cHHHHHHHH-----Hhhe
Confidence 45566668999999986655454441 2233333223 555443211 11 111 112223333 4999
Q ss_pred EEcChhhhhhhhc-cceee---cccCCCCccCccccHHHhhcCCCCCcc-eEEEEE-ecc-cccCHHHHHHHHHHhHhhc
Q 016975 98 IRLSAATQEYANS-IICNV---HGVNPKFLEIGKKKKEQQQNGTHAFAK-GAYYIG-KMV-WSKGYKELLELLDDHQKEL 170 (379)
Q Consensus 98 i~~S~~~~~~~~~-~i~~i---~gvd~~~~~~~~~~~~~~~~~~~~~~~-~il~vg-rl~-~~Kg~~~li~a~~~l~~~~ 170 (379)
+|+=.+-.++.++ ++... |.+-. ...+.......+.....++++ +.+.-| |-. -.+.+..++++++.+.+++
T Consensus 138 l~ifPFE~~~y~~~g~~~~~VGHPl~d-~~~~~~~~~~~~~~~l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~ 216 (373)
T PF02684_consen 138 LVIFPFEPEFYKKHGVPVTYVGHPLLD-EVKPEPDRAEAREKLLDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQR 216 (373)
T ss_pred eECCcccHHHHhccCCCeEEECCcchh-hhccCCCHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 9998886666554 33222 22111 111111112212221233344 455556 443 3566789999999999999
Q ss_pred CCcEEEEEcCCcChHH-HHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 171 AGLEVDLYGNGEDFNQ-IQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 171 ~~~~l~i~G~g~~~~~-l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
|++++++........+ +++.....+.++.+.-...+..++|+.||+.+..| |++++|++.+|+|.|..--
T Consensus 217 p~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~al~~S-----GTaTLE~Al~g~P~Vv~Yk 287 (373)
T PF02684_consen 217 PDLQFVVPVAPEVHEELIEEILAEYPPDVSIVIIEGESYDAMAAADAALAAS-----GTATLEAALLGVPMVVAYK 287 (373)
T ss_pred CCeEEEEecCCHHHHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcchhhcC-----CHHHHHHHHhCCCEEEEEc
Confidence 9999998876555444 55555555544444433334448999999999887 8999999999999988764
No 109
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=98.44 E-value=4.2e-06 Score=78.93 Aligned_cols=247 Identities=11% Similarity=0.008 Sum_probs=127.6
Q ss_pred cccccCCCCCCcEEEEcCCcchhhhhcccccccccC-cEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEE
Q 016975 20 DISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVI 98 (379)
Q Consensus 20 ~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~-~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 98 (379)
+..+++++++||+||........... ...+..+ |++....+..+. ...+.+.++ +++++
T Consensus 82 ~~~~i~~~~kPdvvi~~Ggy~s~p~~---~aa~~~~~p~~i~e~n~~~g------------~~nr~~~~~-----a~~v~ 141 (352)
T PRK12446 82 DAYVRIRKLKPDVIFSKGGFVSVPVV---IGGWLNRVPVLLHESDMTPG------------LANKIALRF-----ASKIF 141 (352)
T ss_pred HHHHHHHhcCCCEEEecCchhhHHHH---HHHHHcCCCEEEECCCCCcc------------HHHHHHHHh-----hCEEE
Confidence 45567889999999996533321110 1222223 664444333221 122333333 46655
Q ss_pred EcChhhhh-hhhccceee-cccCCCCccCccccHHHhhcCCCCCcceEEEEE-ecccccCHHHH-HHHHHHhHhhcCCcE
Q 016975 99 RLSAATQE-YANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIG-KMVWSKGYKEL-LELLDDHQKELAGLE 174 (379)
Q Consensus 99 ~~S~~~~~-~~~~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vg-rl~~~Kg~~~l-i~a~~~l~~~~~~~~ 174 (379)
+--+...+ +..+++... +-|...+.... ........+..+++++|+.+| +.. .+.+..+ .+++..+. .+++
T Consensus 142 ~~f~~~~~~~~~~k~~~tG~Pvr~~~~~~~-~~~~~~~~~l~~~~~~iLv~GGS~G-a~~in~~~~~~l~~l~---~~~~ 216 (352)
T PRK12446 142 VTFEEAAKHLPKEKVIYTGSPVREEVLKGN-REKGLAFLGFSRKKPVITIMGGSLG-AKKINETVREALPELL---LKYQ 216 (352)
T ss_pred EEccchhhhCCCCCeEEECCcCCccccccc-chHHHHhcCCCCCCcEEEEECCccc-hHHHHHHHHHHHHhhc---cCcE
Confidence 43333333 333343322 44444433222 212222333344566666665 444 4455433 34444442 2355
Q ss_pred EE-EEcCCcChHHHHHHHHhcCCeeEEecCC-CCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCC-----c
Q 016975 175 VD-LYGNGEDFNQIQEAAEKLKIVVRVYPGR-DHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHP-----S 247 (379)
Q Consensus 175 l~-i~G~g~~~~~l~~~~~~~~l~v~~~g~~-~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g-----~ 247 (379)
++ ++|... .++... ... +..+++++ ++-.++|..||++|.- +-++++.|++++|+|+|..... .
T Consensus 217 vv~~~G~~~-~~~~~~---~~~-~~~~~~f~~~~m~~~~~~adlvIsr----~G~~t~~E~~~~g~P~I~iP~~~~~~~~ 287 (352)
T PRK12446 217 IVHLCGKGN-LDDSLQ---NKE-GYRQFEYVHGELPDILAITDFVISR----AGSNAIFEFLTLQKPMLLIPLSKFASRG 287 (352)
T ss_pred EEEEeCCch-HHHHHh---hcC-CcEEecchhhhHHHHHHhCCEEEEC----CChhHHHHHHHcCCCEEEEcCCCCCCCc
Confidence 44 455432 233221 111 33455666 4555999999999854 3578899999999999988542 1
Q ss_pred -----ccccccCCCEEEeC----CHHHHHHHHHHHHhCCCCCCcHHHHhcCCHHHHHHHHHHHH
Q 016975 248 -----NDFFKQFPNCRTYD----DRNGFVEATLKALAEEPALPTEAQRHQLSWESATERFLQVA 302 (379)
Q Consensus 248 -----~e~i~~~~~g~~~~----~~~~l~~~i~~~l~~~~~~~~~~~~~~~sw~~~~~~~~~~~ 302 (379)
.+.+.+...+.... +++.+.+++.++++|++. + +.....+...+.++++.+..
T Consensus 288 ~Q~~Na~~l~~~g~~~~l~~~~~~~~~l~~~l~~ll~~~~~-~-~~~~~~~~~~~aa~~i~~~i 349 (352)
T PRK12446 288 DQILNAESFERQGYASVLYEEDVTVNSLIKHVEELSHNNEK-Y-KTALKKYNGKEAIQTIIDHI 349 (352)
T ss_pred hHHHHHHHHHHCCCEEEcchhcCCHHHHHHHHHHHHcCHHH-H-HHHHHHcCCCCHHHHHHHHH
Confidence 12445555564443 789999999998876433 1 12223444555555555443
No 110
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=98.37 E-value=6.1e-06 Score=76.73 Aligned_cols=113 Identities=17% Similarity=0.158 Sum_probs=78.4
Q ss_pred CcceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCC-CCHHHHHhhcCEEE
Q 016975 140 FAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGR-DHADLIFHDYKVFL 218 (379)
Q Consensus 140 ~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~-~~~~~~~~~~dv~v 218 (379)
.+.+++++|..... .++++++. .++..++++|.... +....++++.+.. ++-.++|..||++|
T Consensus 192 ~~~iLv~~gg~~~~----~~~~~l~~----~~~~~~~v~g~~~~--------~~~~~ni~~~~~~~~~~~~~m~~ad~vI 255 (318)
T PF13528_consen 192 EPKILVYFGGGGPG----DLIEALKA----LPDYQFIVFGPNAA--------DPRPGNIHVRPFSTPDFAELMAAADLVI 255 (318)
T ss_pred CCEEEEEeCCCcHH----HHHHHHHh----CCCCeEEEEcCCcc--------cccCCCEEEeecChHHHHHHHHhCCEEE
Confidence 35578899987666 55666655 46788999986631 1113477777765 55559999999999
Q ss_pred ecCCCCcchhHHHHHHHcCCeEEecCC-Cccc------ccccCCCEEEeC----CHHHHHHHHHH
Q 016975 219 NPSTTDVVCTTTAEALAMGKIVVCANH-PSND------FFKQFPNCRTYD----DRNGFVEATLK 272 (379)
Q Consensus 219 ~ps~~E~~~~~~~EAma~G~PVI~t~~-g~~e------~i~~~~~g~~~~----~~~~l~~~i~~ 272 (379)
.-+ --.++.||+++|+|+|+-.. +..| .+...+.|...+ +++.|.++|.+
T Consensus 256 s~~----G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~~~~~~~~~~l~~~l~~ 316 (318)
T PF13528_consen 256 SKG----GYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVLSQEDLTPERLAEFLER 316 (318)
T ss_pred ECC----CHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEcccccCCHHHHHHHHhc
Confidence 764 12349999999999999988 4333 445555665544 77888887765
No 111
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=98.36 E-value=3.1e-06 Score=77.17 Aligned_cols=97 Identities=10% Similarity=0.128 Sum_probs=74.6
Q ss_pred cceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCC-cChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEe
Q 016975 141 AKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNG-EDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLN 219 (379)
Q Consensus 141 ~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g-~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ 219 (379)
+.+++++|..+..+....+++++..+... .++ .+++|.+ +..+++++..+..+ ++++++++++..++|..||++|.
T Consensus 171 ~~iLi~~GG~d~~~~~~~~l~~l~~~~~~-~~i-~vv~G~~~~~~~~l~~~~~~~~-~i~~~~~~~~m~~lm~~aDl~Is 247 (279)
T TIGR03590 171 RRVLVSFGGADPDNLTLKLLSALAESQIN-ISI-TLVTGSSNPNLDELKKFAKEYP-NIILFIDVENMAELMNEADLAIG 247 (279)
T ss_pred CeEEEEeCCcCCcCHHHHHHHHHhccccC-ceE-EEEECCCCcCHHHHHHHHHhCC-CEEEEeCHHHHHHHHHHCCEEEE
Confidence 34788888888877677888888765311 234 3366765 55778888776644 78888998888899999999998
Q ss_pred cCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 220 PSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 220 ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
+ .|.++.|++++|+|+|+...
T Consensus 248 ~-----~G~T~~E~~a~g~P~i~i~~ 268 (279)
T TIGR03590 248 A-----AGSTSWERCCLGLPSLAICL 268 (279)
T ss_pred C-----CchHHHHHHHcCCCEEEEEe
Confidence 5 56899999999999998766
No 112
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.21 E-value=7.4e-06 Score=76.92 Aligned_cols=238 Identities=14% Similarity=0.085 Sum_probs=127.2
Q ss_pred cccccCCCCCCcEEEEcCCcchhhhhcccccccccC-cEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEE
Q 016975 20 DISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVI 98 (379)
Q Consensus 20 ~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~-~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 98 (379)
.+...+.+.+||+|++.....-+... + ......+ | |..+|.-.-.+- ...+..-......+.++ +|..+
T Consensus 58 ~~~~~~~~~~Pd~Vlv~GD~~~~la~-a-laA~~~~ip-v~HieaGlRs~d--~~~g~~de~~R~~i~~l-----a~lhf 127 (346)
T PF02350_consen 58 ELADVLEREKPDAVLVLGDRNEALAA-A-LAAFYLNIP-VAHIEAGLRSGD--RTEGMPDEINRHAIDKL-----AHLHF 127 (346)
T ss_dssp HHHHHHHHHT-SEEEEETTSHHHHHH-H-HHHHHTT-E-EEEES-----S---TTSSTTHHHHHHHHHHH------SEEE
T ss_pred HHHHHHHhcCCCEEEEEcCCchHHHH-H-HHHHHhCCC-EEEecCCCCccc--cCCCCchhhhhhhhhhh-----hhhhc
Confidence 46677778899999996654433331 1 2222223 6 444443311111 01122223333444444 58888
Q ss_pred EcChhhh-hhhhc-----cceee--cccCCCCccCcccc-HH-HhhcCCCCCcceEEEEE-ecc--c-ccCHHHHHHHHH
Q 016975 99 RLSAATQ-EYANS-----IICNV--HGVNPKFLEIGKKK-KE-QQQNGTHAFAKGAYYIG-KMV--W-SKGYKELLELLD 164 (379)
Q Consensus 99 ~~S~~~~-~~~~~-----~i~~i--~gvd~~~~~~~~~~-~~-~~~~~~~~~~~~il~vg-rl~--~-~Kg~~~li~a~~ 164 (379)
+.++... .+.+. ++.++ -++|.-........ .. .........++.++... +.. . ......+.+++.
T Consensus 128 ~~t~~~~~~L~~~G~~~~rI~~vG~~~~D~l~~~~~~~~~~~~~~~i~~~~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~ 207 (346)
T PF02350_consen 128 APTEEARERLLQEGEPPERIFVVGNPGIDALLQNKEEIEEKYKNSGILQDAPKPYILVTLHPVTNEDNPERLEQILEALK 207 (346)
T ss_dssp ESSHHHHHHHHHTT--GGGEEE---HHHHHHHHHHHTTCC-HHHHHHHHCTTSEEEEEE-S-CCCCTHH--HHHHHHHHH
T ss_pred cCCHHHHHHHHhcCCCCCeEEEEChHHHHHHHHhHHHHhhhhhhHHHHhccCCCEEEEEeCcchhcCChHHHHHHHHHHH
Confidence 8886644 44433 33333 24442111100000 00 00110012244455444 322 2 455778888888
Q ss_pred HhHhhcCCcEEEEEcCC--cChHHHHHHHHhcCCeeEEecCCCCHH--HHHhhcCEEEecCCCCcchhHHH-HHHHcCCe
Q 016975 165 DHQKELAGLEVDLYGNG--EDFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTA-EALAMGKI 239 (379)
Q Consensus 165 ~l~~~~~~~~l~i~G~g--~~~~~l~~~~~~~~l~v~~~g~~~~~~--~~~~~~dv~v~ps~~E~~~~~~~-EAma~G~P 239 (379)
.+.+. +++.+++.... .....+.+..+++. ++.++..+.+.+ .+++.|+++|--| | .+. ||.++|+|
T Consensus 208 ~L~~~-~~~~vi~~~hn~p~~~~~i~~~l~~~~-~v~~~~~l~~~~~l~ll~~a~~vvgdS-----s-GI~eEa~~lg~P 279 (346)
T PF02350_consen 208 ALAER-QNVPVIFPLHNNPRGSDIIIEKLKKYD-NVRLIEPLGYEEYLSLLKNADLVVGDS-----S-GIQEEAPSLGKP 279 (346)
T ss_dssp HHHHH-TTEEEEEE--S-HHHHHHHHHHHTT-T-TEEEE----HHHHHHHHHHESEEEESS-----H-HHHHHGGGGT--
T ss_pred HHHhc-CCCcEEEEecCCchHHHHHHHHhcccC-CEEEECCCCHHHHHHHHhcceEEEEcC-----c-cHHHHHHHhCCe
Confidence 88877 78888887752 23556666666663 899999998888 9999999998554 4 577 99999999
Q ss_pred EEecCC-Cc-ccccccCCCEEEeC-CHHHHHHHHHHHHhC
Q 016975 240 VVCANH-PS-NDFFKQFPNCRTYD-DRNGFVEATLKALAE 276 (379)
Q Consensus 240 VI~t~~-g~-~e~i~~~~~g~~~~-~~~~l~~~i~~~l~~ 276 (379)
||.-+. |. .+....+.+-+ +. |.+++.+++.+++.+
T Consensus 280 ~v~iR~~geRqe~r~~~~nvl-v~~~~~~I~~ai~~~l~~ 318 (346)
T PF02350_consen 280 VVNIRDSGERQEGRERGSNVL-VGTDPEAIIQAIEKALSD 318 (346)
T ss_dssp EEECSSS-S-HHHHHTTSEEE-ETSSHHHHHHHHHHHHH-
T ss_pred EEEecCCCCCHHHHhhcceEE-eCCCHHHHHHHHHHHHhC
Confidence 999977 66 55666665556 77 999999999999986
No 113
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=3.6e-05 Score=74.03 Aligned_cols=133 Identities=17% Similarity=0.145 Sum_probs=97.2
Q ss_pred eEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcC---hHHHHHHHHhcCC---eeEEecCCCCHH--HHHhhc
Q 016975 143 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED---FNQIQEAAEKLKI---VVRVYPGRDHAD--LIFHDY 214 (379)
Q Consensus 143 ~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~---~~~l~~~~~~~~l---~v~~~g~~~~~~--~~~~~~ 214 (379)
.++|++--+..|-...+.+.+.++.+.-|+-.|++.|.|++ ...+++.+++.|+ +.+|.+..++++ +.|..+
T Consensus 430 avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~~iA 509 (620)
T COG3914 430 AVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARYGIA 509 (620)
T ss_pred eEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhhchh
Confidence 56666666778889999999999988899999999998766 5668888888888 678889999888 999999
Q ss_pred CEEEecCCCCcchhHHHHHHHcCCeEEecCCCc------ccccccC-CCEEEeCCHHHHHHHHHHHHhC
Q 016975 215 KVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS------NDFFKQF-PNCRTYDDRNGFVEATLKALAE 276 (379)
Q Consensus 215 dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~------~e~i~~~-~~g~~~~~~~~l~~~i~~~l~~ 276 (379)
|+++=+--+-| ..+.+||+.||+|||+---.. ..++.+- ..-++.++.++..+.-..+-.+
T Consensus 510 DlvLDTyPY~g-~TTa~daLwm~vPVlT~~G~~FasR~~~si~~~agi~e~vA~s~~dYV~~av~~g~d 577 (620)
T COG3914 510 DLVLDTYPYGG-HTTASDALWMGVPVLTRVGEQFASRNGASIATNAGIPELVADSRADYVEKAVAFGSD 577 (620)
T ss_pred heeeecccCCC-ccchHHHHHhcCceeeeccHHHHHhhhHHHHHhcCCchhhcCCHHHHHHHHHHhccc
Confidence 99996654433 568999999999999743211 1233332 2225555666666655544444
No 114
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=98.17 E-value=2.6e-05 Score=74.84 Aligned_cols=167 Identities=14% Similarity=0.041 Sum_probs=100.7
Q ss_pred hcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcC-hHHHHHHHHhcCC---eeEEecCCCCHH-
Q 016975 134 QNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED-FNQIQEAAEKLKI---VVRVYPGRDHAD- 208 (379)
Q Consensus 134 ~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~l---~v~~~g~~~~~~- 208 (379)
..+.+++ .|+|.+--...|=-...++++.++.++.|+.+|++...... .+.+++.+++.|+ ++.|.+..+..+
T Consensus 278 ~~gLp~d--~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~eh 355 (468)
T PF13844_consen 278 QYGLPED--AVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASGEARLRRRFAAHGVDPDRIIFSPVAPREEH 355 (468)
T ss_dssp GGT--SS--SEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTHHHHHHHHHHHTTS-GGGEEEEE---HHHH
T ss_pred HcCCCCC--ceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHHHHHHHHHHHHcCCChhhEEEcCCCCHHHH
Confidence 3444544 45555555568889999999999999999999988764443 5668888888887 577778776666
Q ss_pred -HHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc-c-----cccccC-CCEEEeCCHHHHHHHHHHHHhCCCC-
Q 016975 209 -LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-N-----DFFKQF-PNCRTYDDRNGFVEATLKALAEEPA- 279 (379)
Q Consensus 209 -~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-~-----e~i~~~-~~g~~~~~~~~l~~~i~~~l~~~~~- 279 (379)
..|+.+|+++=|-.+ +-+++.+||+.+|+|||+-.-.. . .++..- -.-++..|.++..+.-.++-+|+..
T Consensus 356 l~~~~~~DI~LDT~p~-nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA~s~~eYv~~Av~La~D~~~l 434 (468)
T PF13844_consen 356 LRRYQLADICLDTFPY-NGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIADSEEEYVEIAVRLATDPERL 434 (468)
T ss_dssp HHHGGG-SEEE--SSS---SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB-SSHHHHHHHHHHHHH-HHHH
T ss_pred HHHhhhCCEEeeCCCC-CCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcCCCHHHHHHHHHHHhCCHHHH
Confidence 778889999987443 34789999999999999976421 1 122221 1226677999999988888887654
Q ss_pred -CCcHHHH------hcCCHHHHHHHHHHHHh
Q 016975 280 -LPTEAQR------HQLSWESATERFLQVAE 303 (379)
Q Consensus 280 -~~~~~~~------~~~sw~~~~~~~~~~~~ 303 (379)
.++...+ .-|+-...++.+++.|+
T Consensus 435 ~~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~ 465 (468)
T PF13844_consen 435 RALRAKLRDRRSKSPLFDPKRFARNLEAAYR 465 (468)
T ss_dssp HHHHHHHHHHHHHSGGG-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 2222111 34566667777776665
No 115
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.12 E-value=9.6e-06 Score=74.81 Aligned_cols=238 Identities=13% Similarity=0.064 Sum_probs=130.7
Q ss_pred cccccCCCCCCcEEEEcCCcchhhhhcccccccccCcEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEEE
Q 016975 20 DISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIR 99 (379)
Q Consensus 20 ~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 99 (379)
++.+.+...+||++++-+...++.-- + ...++..|.+-++|-.-+.-.. ++. .. ... ...+||++++
T Consensus 76 ~~~~~i~~~kpD~~i~IDsPdFnl~v-a-k~lrk~~p~i~iihYV~PsVWA-Wr~----~R-a~~-----i~~~~D~lLa 142 (381)
T COG0763 76 ELVRYILANKPDVLILIDSPDFNLRV-A-KKLRKAGPKIKIIHYVSPSVWA-WRP----KR-AVK-----IAKYVDHLLA 142 (381)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCchHH-H-HHHHHhCCCCCeEEEECcceee-ech----hh-HHH-----HHHHhhHeee
Confidence 34455557899999885544343331 1 2333333444444433222221 111 11 111 2233599999
Q ss_pred cChhhhhhhh-ccceee---cccCCCC-ccCccccHHHhhcCCCC-CcceEEEEE-ecc-cccCHHHHHHHHHHhHhhcC
Q 016975 100 LSAATQEYAN-SIICNV---HGVNPKF-LEIGKKKKEQQQNGTHA-FAKGAYYIG-KMV-WSKGYKELLELLDDHQKELA 171 (379)
Q Consensus 100 ~S~~~~~~~~-~~i~~i---~gvd~~~-~~~~~~~~~~~~~~~~~-~~~~il~vg-rl~-~~Kg~~~li~a~~~l~~~~~ 171 (379)
+=.+-.++.. .++... |..-... +.+... ..+.+.+.+. .+...+..| |-+ -.+....+++++++++.++|
T Consensus 143 ilPFE~~~y~k~g~~~~yVGHpl~d~i~~~~~r~-~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~ 221 (381)
T COG0763 143 ILPFEPAFYDKFGLPCTYVGHPLADEIPLLPDRE-AAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYP 221 (381)
T ss_pred ecCCCHHHHHhcCCCeEEeCChhhhhccccccHH-HHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9877665543 333322 3222222 222222 2333443433 344556666 332 35777888999999999999
Q ss_pred CcEEEEEcCCcChHHHHHHHH-hcCCeeEEecCCCCHH-HHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCC-Cc-
Q 016975 172 GLEVDLYGNGEDFNQIQEAAE-KLKIVVRVYPGRDHAD-LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH-PS- 247 (379)
Q Consensus 172 ~~~l~i~G~g~~~~~l~~~~~-~~~l~v~~~g~~~~~~-~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~-g~- 247 (379)
+.++++--..+..+.++.... ........+ -.+... +.+..||+.+..| |++.+|+|.+|+|.|.+-- ..
T Consensus 222 ~~~~vlp~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~aD~al~aS-----GT~tLE~aL~g~P~Vv~Yk~~~i 295 (381)
T COG0763 222 DLKFVLPLVNAKYRRIIEEALKWEVAGLSLI-LIDGEKRKAFAAADAALAAS-----GTATLEAALAGTPMVVAYKVKPI 295 (381)
T ss_pred CceEEEecCcHHHHHHHHHHhhccccCceEE-ecCchHHHHHHHhhHHHHhc-----cHHHHHHHHhCCCEEEEEeccHH
Confidence 999999776665444443332 222111111 112222 7899999999876 8999999999999998753 22
Q ss_pred ----------------ccccccCCCE--EEeC--CHHHHHHHHHHHHhCC
Q 016975 248 ----------------NDFFKQFPNC--RTYD--DRNGFVEATLKALAEE 277 (379)
Q Consensus 248 ----------------~e~i~~~~~g--~~~~--~~~~l~~~i~~~l~~~ 277 (379)
..++.+.... ++-+ .++.+++++..++.+.
T Consensus 296 t~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~ 345 (381)
T COG0763 296 TYFIAKRLVKLPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLNG 345 (381)
T ss_pred HHHHHHHhccCCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcCh
Confidence 1122222111 1111 6888888888888775
No 116
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=98.05 E-value=0.00016 Score=69.51 Aligned_cols=120 Identities=18% Similarity=0.057 Sum_probs=79.2
Q ss_pred cceEEEEEeccc---ccCHHHHHHHHHHhHhhcCCcE-EEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCE
Q 016975 141 AKGAYYIGKMVW---SKGYKELLELLDDHQKELAGLE-VDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKV 216 (379)
Q Consensus 141 ~~~il~vgrl~~---~Kg~~~li~a~~~l~~~~~~~~-l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv 216 (379)
+.+++..|+... .+....+++++..+ +.+ ++.+|...... .....++.+.+++++. .++..||+
T Consensus 240 ~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~-----~~~~i~~~g~~~~~~------~~~~~~v~~~~~~p~~-~ll~~~d~ 307 (401)
T cd03784 240 PPVYVGFGSMVVRDPEALARLDVEAVATL-----GQRAILSLGWGGLGA------EDLPDNVRVVDFVPHD-WLLPRCAA 307 (401)
T ss_pred CcEEEeCCCCcccCHHHHHHHHHHHHHHc-----CCeEEEEccCccccc------cCCCCceEEeCCCCHH-HHhhhhhe
Confidence 456677777743 23344455555432 344 44556544322 2233478888988754 58999999
Q ss_pred EEecCCCCcchhHHHHHHHcCCeEEecCCCc-----ccccccCCCEEEeC----CHHHHHHHHHHHHhC
Q 016975 217 FLNPSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----DRNGFVEATLKALAE 276 (379)
Q Consensus 217 ~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-----~e~i~~~~~g~~~~----~~~~l~~~i~~~l~~ 276 (379)
+|. -|-..++.||+++|+|+|...... .+.+.....|...+ +++++.+++.+++++
T Consensus 308 ~I~----hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~G~g~~l~~~~~~~~~l~~al~~~l~~ 372 (401)
T cd03784 308 VVH----HGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGPALDPRELTAERLAAALRRLLDP 372 (401)
T ss_pred eee----cCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHCCCCCCCCcccCCHHHHHHHHHHHhCH
Confidence 993 333578999999999999998743 33455555665544 689999999998874
No 117
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=97.86 E-value=0.00029 Score=67.62 Aligned_cols=126 Identities=17% Similarity=0.122 Sum_probs=78.6
Q ss_pred ceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecC
Q 016975 142 KGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPS 221 (379)
Q Consensus 142 ~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps 221 (379)
.+++..|++...+. . +++.+.+...+.+.-.++..|.+.+...+. ....++.+.+++++. +++..||++|..+
T Consensus 227 ~v~vs~Gs~~~~~~-~-~~~~~~~al~~~~~~~i~~~g~~~~~~~~~----~~~~~v~~~~~~p~~-~ll~~~~~~I~hg 299 (392)
T TIGR01426 227 VVLISLGTVFNNQP-S-FYRTCVEAFRDLDWHVVLSVGRGVDPADLG----ELPPNVEVRQWVPQL-EILKKADAFITHG 299 (392)
T ss_pred EEEEecCccCCCCH-H-HHHHHHHHHhcCCCeEEEEECCCCChhHhc----cCCCCeEEeCCCCHH-HHHhhCCEEEECC
Confidence 35566777533222 2 333222222222322244567665543332 233477888888765 6999999999654
Q ss_pred CCCcchhHHHHHHHcCCeEEecCCCc-c----cccccCCCEEEeC----CHHHHHHHHHHHHhCCC
Q 016975 222 TTDVVCTTTAEALAMGKIVVCANHPS-N----DFFKQFPNCRTYD----DRNGFVEATLKALAEEP 278 (379)
Q Consensus 222 ~~E~~~~~~~EAma~G~PVI~t~~g~-~----e~i~~~~~g~~~~----~~~~l~~~i~~~l~~~~ 278 (379)
| ..++.||+++|+|+|+..... . +.+.+...|...+ +++++.++|.+++.++.
T Consensus 300 ---G-~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~g~g~~l~~~~~~~~~l~~ai~~~l~~~~ 361 (392)
T TIGR01426 300 ---G-MNSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGRHLPPEEVTAEKLREAVLAVLSDPR 361 (392)
T ss_pred ---C-chHHHHHHHhCCCEEecCCcccHHHHHHHHHHCCCEEEeccccCCHHHHHHHHHHHhcCHH
Confidence 2 247899999999999987733 2 2344555665554 68999999999998754
No 118
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=97.79 E-value=0.00059 Score=63.62 Aligned_cols=116 Identities=16% Similarity=0.163 Sum_probs=71.9
Q ss_pred eEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCC-CHHHHHhhcCEEEecC
Q 016975 143 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRD-HADLIFHDYKVFLNPS 221 (379)
Q Consensus 143 ~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~-~~~~~~~~~dv~v~ps 221 (379)
+++|.|. .+...+++++.+ .+++.+++.+..... ..+..++.+.+..+ +..++|..||++|.-+
T Consensus 191 iLv~~g~----~~~~~l~~~l~~----~~~~~~i~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~l~~ad~vI~~~ 255 (321)
T TIGR00661 191 ILVYIGF----EYRYKILELLGK----IANVKFVCYSYEVAK-------NSYNENVEIRRITTDNFKELIKNAELVITHG 255 (321)
T ss_pred EEEECCc----CCHHHHHHHHHh----CCCeEEEEeCCCCCc-------cccCCCEEEEECChHHHHHHHHhCCEEEECC
Confidence 4455443 244556666644 345655443322111 12233778887765 3348999999999876
Q ss_pred CCCcchhHHHHHHHcCCeEEecCCCc-cc------ccccCCCEEEeC--CHHHHHHHHHHHHhCCC
Q 016975 222 TTDVVCTTTAEALAMGKIVVCANHPS-ND------FFKQFPNCRTYD--DRNGFVEATLKALAEEP 278 (379)
Q Consensus 222 ~~E~~~~~~~EAma~G~PVI~t~~g~-~e------~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~ 278 (379)
-. .++.||+++|+|+|....++ .| .+.+...|...+ +. ++.+++...++++.
T Consensus 256 G~----~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~~~~~-~~~~~~~~~~~~~~ 316 (321)
T TIGR00661 256 GF----SLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEYKEL-RLLEAILDIRNMKR 316 (321)
T ss_pred Ch----HHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEcChhhH-HHHHHHHhcccccc
Confidence 32 36899999999999988843 33 355656676666 44 66666666665544
No 119
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=97.78 E-value=0.0091 Score=54.00 Aligned_cols=155 Identities=14% Similarity=0.078 Sum_probs=101.4
Q ss_pred ceEEEEEe-cccccCHHHHHHHHHHhHhhcCCcEEEEE-cC--Cc--ChHHHHHHHHhcCC--eeEEe-cCCCCHH--HH
Q 016975 142 KGAYYIGK-MVWSKGYKELLELLDDHQKELAGLEVDLY-GN--GE--DFNQIQEAAEKLKI--VVRVY-PGRDHAD--LI 210 (379)
Q Consensus 142 ~~il~vgr-l~~~Kg~~~li~a~~~l~~~~~~~~l~i~-G~--g~--~~~~l~~~~~~~~l--~v~~~-g~~~~~~--~~ 210 (379)
+..+-+|+ -++..++.++++++.+.. ..++++++- |- |. ..+++++..+++-. ++.++ ..++-.+ .+
T Consensus 146 ~~tIlvGNSgd~SN~Hie~L~~l~~~~--~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl~l 223 (322)
T PRK02797 146 KMTILVGNSGDRSNRHIEALRALHQQF--GDNVKIIVPMGYPANNQAYIEEVRQAGLALFGAENFQILTEKLPFDDYLAL 223 (322)
T ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHh--CCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcccEEehhhhCCHHHHHHH
Confidence 45566774 678899988888887654 457777774 32 22 35667777776644 66666 5677777 99
Q ss_pred HhhcCEEEecCC-CCcchhHHHHHHHcCCeEEecCC-Cc-ccccccCCCEEEeC----CHHHHHHHHHHHHhCCCCCCcH
Q 016975 211 FHDYKVFLNPST-TDVVCTTTAEALAMGKIVVCANH-PS-NDFFKQFPNCRTYD----DRNGFVEATLKALAEEPALPTE 283 (379)
Q Consensus 211 ~~~~dv~v~ps~-~E~~~~~~~EAma~G~PVI~t~~-g~-~e~i~~~~~g~~~~----~~~~l~~~i~~~l~~~~~~~~~ 283 (379)
++.||+.++.-. -+|.|+ ++=.+..|+||+-+.. +. .++.+.+- -++++ |...+.++=.++...+...+.
T Consensus 224 L~~~Dl~~f~~~RQQgiGn-l~lLi~~G~~v~l~r~n~fwqdl~e~gv-~Vlf~~d~L~~~~v~e~~rql~~~dk~~I~- 300 (322)
T PRK02797 224 LRQCDLGYFIFARQQGIGT-LCLLIQLGKPVVLSRDNPFWQDLTEQGL-PVLFTGDDLDEDIVREAQRQLASVDKNIIA- 300 (322)
T ss_pred HHhCCEEEEeechhhHHhH-HHHHHHCCCcEEEecCCchHHHHHhCCC-eEEecCCcccHHHHHHHHHHHHhhCcceee-
Confidence 999999998764 488886 4557899999999987 55 55544443 23333 555555543333322222221
Q ss_pred HHHhcCCHHHHHHHHHHHHhccc
Q 016975 284 AQRHQLSWESATERFLQVAELDQ 306 (379)
Q Consensus 284 ~~~~~~sw~~~~~~~~~~~~~~~ 306 (379)
|+-++.++.+.++++.+.
T Consensus 301 -----Ff~pn~~~~W~~~l~~~~ 318 (322)
T PRK02797 301 -----FFSPNYLQGWRNALAIAA 318 (322)
T ss_pred -----ecCHhHHHHHHHHHHHhh
Confidence 777888888888887654
No 120
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=97.55 E-value=0.00092 Score=66.09 Aligned_cols=201 Identities=8% Similarity=-0.017 Sum_probs=110.1
Q ss_pred cccccCCCCCCcEEEEcCCcchhhhhcccccccccC--cEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceE
Q 016975 20 DISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR--YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKV 97 (379)
Q Consensus 20 ~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~--~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 97 (379)
++.+.+.+++||++++-+...+++.. ++..++... |++..+--.. .. ++. .-.+.+.+. +|++
T Consensus 301 ~l~~~i~~~kPD~vIlID~PgFNlrL-AK~lkk~Gi~ipviyYVsPqV---WA-WR~-----~Rikki~k~-----vD~l 365 (608)
T PRK01021 301 KLYKTILKTNPRTVICIDFPDFHFLL-IKKLRKRGYKGKIVHYVCPSI---WA-WRP-----KRKTILEKY-----LDLL 365 (608)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCHHH-HHHHHhcCCCCCEEEEECccc---ee-eCc-----chHHHHHHH-----hhhh
Confidence 35566668899999995544454441 223333221 6655554222 11 111 111223333 4899
Q ss_pred EEcChhhhhhhhc-cceee---ccc-CCCCccCccccHHHhhcCCCCCcc-eEEEEE-ecc-cccCHHHHHHHHH--HhH
Q 016975 98 IRLSAATQEYANS-IICNV---HGV-NPKFLEIGKKKKEQQQNGTHAFAK-GAYYIG-KMV-WSKGYKELLELLD--DHQ 167 (379)
Q Consensus 98 i~~S~~~~~~~~~-~i~~i---~gv-d~~~~~~~~~~~~~~~~~~~~~~~-~il~vg-rl~-~~Kg~~~li~a~~--~l~ 167 (379)
+|+=.+-.++.++ ++.+. |.+ |.-...+ .....+.+.+..++++ +.+.-| |-. -.+....++++++ .+.
T Consensus 366 l~IfPFE~~~y~~~gv~v~yVGHPL~d~i~~~~-~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~ 444 (608)
T PRK01021 366 LLILPFEQNLFKDSPLRTVYLGHPLVETISSFS-PNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLA 444 (608)
T ss_pred eecCccCHHHHHhcCCCeEEECCcHHhhcccCC-CHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 9998876666543 33332 322 2111111 1122233333333333 445555 443 3567778888887 442
Q ss_pred hhcCCcEEEEEcCCc-ChHHHHHHHHhcC-CeeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 168 KELAGLEVDLYGNGE-DFNQIQEAAEKLK-IVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 168 ~~~~~~~l~i~G~g~-~~~~l~~~~~~~~-l~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
++.++++....+ +.+.+++..++.+ +++.+...- +..++++.||+.+..| |++++|++.+|+|.|..-.
T Consensus 445 ---~~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~ii~~~-~~~~~m~aaD~aLaaS-----GTaTLEaAL~g~PmVV~YK 515 (608)
T PRK01021 445 ---STHQLLVSSANPKYDHLILEVLQQEGCLHSHIVPSQ-FRYELMRECDCALAKC-----GTIVLETALNQTPTIVTCQ 515 (608)
T ss_pred ---cCeEEEEecCchhhHHHHHHHHhhcCCCCeEEecCc-chHHHHHhcCeeeecC-----CHHHHHHHHhCCCEEEEEe
Confidence 357787754332 2455666665444 244544221 2248999999999887 9999999999999988654
No 121
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.54 E-value=0.0015 Score=60.80 Aligned_cols=263 Identities=14% Similarity=0.078 Sum_probs=142.8
Q ss_pred cccccCCCCCCcEEEEcCCcchhhhhcccccccccC-cEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEE
Q 016975 20 DISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVI 98 (379)
Q Consensus 20 ~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~-~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 98 (379)
.+.+.+.+.+||+|.++.....++. +..+..+.+ |+.-+.-+.. .+ .-.+..- +++.+....+|.-+
T Consensus 83 ~~~~vl~~~kPD~VlVhGDT~t~lA--~alaa~~~~IpV~HvEAGlR-t~-----~~~~PEE----~NR~l~~~~S~~hf 150 (383)
T COG0381 83 GLSKVLEEEKPDLVLVHGDTNTTLA--GALAAFYLKIPVGHVEAGLR-TG-----DLYFPEE----INRRLTSHLSDLHF 150 (383)
T ss_pred HHHHHHHhhCCCEEEEeCCcchHHH--HHHHHHHhCCceEEEecccc-cC-----CCCCcHH----HHHHHHHHhhhhhc
Confidence 4667777999999999876655544 123333333 4322221110 00 0000111 12222222247778
Q ss_pred EcChhhh-hhhhcc-----ceee-c-ccCCCCcc---CccccHHHhhcCCCCCcceEEEEE-ec-ccccCHHHHHHHHHH
Q 016975 99 RLSAATQ-EYANSI-----ICNV-H-GVNPKFLE---IGKKKKEQQQNGTHAFAKGAYYIG-KM-VWSKGYKELLELLDD 165 (379)
Q Consensus 99 ~~S~~~~-~~~~~~-----i~~i-~-gvd~~~~~---~~~~~~~~~~~~~~~~~~~il~vg-rl-~~~Kg~~~li~a~~~ 165 (379)
+.++..+ .+.+.+ +.++ | -+|.-... ...............++..++..+ |- ...+++..+++++.+
T Consensus 151 apte~ar~nLl~EG~~~~~IfvtGnt~iDal~~~~~~~~~~~~~~~~~~~~~~~~~iLvT~HRreN~~~~~~~i~~al~~ 230 (383)
T COG0381 151 APTEIARKNLLREGVPEKRIFVTGNTVIDALLNTRDRVLEDSKILAKGLDDKDKKYILVTAHRRENVGEPLEEICEALRE 230 (383)
T ss_pred CChHHHHHHHHHcCCCccceEEeCChHHHHHHHHHhhhccchhhHHhhhccccCcEEEEEcchhhcccccHHHHHHHHHH
Confidence 8886544 344332 3333 1 12210000 000111111102233333444444 33 344999999999999
Q ss_pred hHhhcCCcEEEEEcCCcChHHHHHHH-HhcCC--eeEEecCCCCHH--HHHhhcCEEEecCCCCcchhHHHHHHHcCCeE
Q 016975 166 HQKELAGLEVDLYGNGEDFNQIQEAA-EKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIV 240 (379)
Q Consensus 166 l~~~~~~~~l~i~G~g~~~~~l~~~~-~~~~l--~v~~~g~~~~~~--~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PV 240 (379)
+..+++++.++.-- .+. ..++... +.++. ++.++..+...+ .++..|-+.+-=| |.-.=||-..|+||
T Consensus 231 i~~~~~~~~viyp~-H~~-~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~iltDS-----GgiqEEAp~lg~Pv 303 (383)
T COG0381 231 IAEEYPDVIVIYPV-HPR-PRVRELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFLILTDS-----GGIQEEAPSLGKPV 303 (383)
T ss_pred HHHhCCCceEEEeC-CCC-hhhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhceEEEecC-----CchhhhHHhcCCcE
Confidence 99888888655533 222 3333333 34443 588888888888 7777775544333 44577999999999
Q ss_pred EecCCCc--ccccccCCCEEEeC-CHHHHHHHHHHHHhCCCC--CCcHHHHhcCCHHHHHHHHHHHHh
Q 016975 241 VCANHPS--NDFFKQFPNCRTYD-DRNGFVEATLKALAEEPA--LPTEAQRHQLSWESATERFLQVAE 303 (379)
Q Consensus 241 I~t~~g~--~e~i~~~~~g~~~~-~~~~l~~~i~~~l~~~~~--~~~~~~~~~~sw~~~~~~~~~~~~ 303 (379)
++-+... +|-+..+. -.++. +.+.+.+++..+++++.. +|+. ....|.=....+++.+...
T Consensus 304 l~lR~~TERPE~v~agt-~~lvg~~~~~i~~~~~~ll~~~~~~~~m~~-~~npYgdg~as~rIv~~l~ 369 (383)
T COG0381 304 LVLRDTTERPEGVEAGT-NILVGTDEENILDAATELLEDEEFYERMSN-AKNPYGDGNASERIVEILL 369 (383)
T ss_pred EeeccCCCCccceecCc-eEEeCccHHHHHHHHHHHhhChHHHHHHhc-ccCCCcCcchHHHHHHHHH
Confidence 9999855 66665554 34555 999999999999998654 3332 2233443445555555544
No 122
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=97.42 E-value=0.0053 Score=57.09 Aligned_cols=218 Identities=14% Similarity=0.064 Sum_probs=116.9
Q ss_pred cccccccCCCCCCcEEEEcCCcchhhhhcccccccccCcEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceE
Q 016975 18 VGDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKV 97 (379)
Q Consensus 18 ~~~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 97 (379)
..++.+++.+++||++++.......-. +.... +|.|.+.++...... .++ ..-+||.+
T Consensus 72 ~~~l~~~~~~~~pDv~is~~s~~a~~v--a~~lg---iP~I~f~D~e~a~~~----------------~~L-t~Pla~~i 129 (335)
T PF04007_consen 72 QYKLLKLIKKFKPDVAISFGSPEAARV--AFGLG---IPSIVFNDTEHAIAQ----------------NRL-TLPLADVI 129 (335)
T ss_pred HHHHHHHHHhhCCCEEEecCcHHHHHH--HHHhC---CCeEEEecCchhhcc----------------cee-ehhcCCee
Confidence 346778888899999998654322211 11122 488888887442221 000 11136888
Q ss_pred EEcChhh----hhhhhc-cceeecccCC----CCccCccccHHHhhcCCCCCcceEEEEEeccc-----ccCH-HHHHHH
Q 016975 98 IRLSAAT----QEYANS-IICNVHGVNP----KFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVW-----SKGY-KELLEL 162 (379)
Q Consensus 98 i~~S~~~----~~~~~~-~i~~i~gvd~----~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~-----~Kg~-~~li~a 162 (379)
++++-.- .++-.+ .+...+|++. ..|.|+... ..+.+.. +.+.|+ + |..+ .+|- ..+-+.
T Consensus 130 ~~P~~~~~~~~~~~G~~~~i~~y~G~~E~ayl~~F~Pd~~v--l~~lg~~-~~~yIv-v-R~~~~~A~y~~~~~~i~~~i 204 (335)
T PF04007_consen 130 ITPEAIPKEFLKRFGAKNQIRTYNGYKELAYLHPFKPDPEV--LKELGLD-DEPYIV-V-RPEAWKASYDNGKKSILPEI 204 (335)
T ss_pred ECCcccCHHHHHhcCCcCCEEEECCeeeEEeecCCCCChhH--HHHcCCC-CCCEEE-E-EeccccCeeecCccchHHHH
Confidence 8877432 223222 3444567774 224444332 2233333 234443 2 3332 2222 223355
Q ss_pred HHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEe
Q 016975 163 LDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVC 242 (379)
Q Consensus 163 ~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~ 242 (379)
+..+.+.. +. ++++-..++..++ .++.+ +.+....-+.-+++..||++|- +-|+...||...|+|+|+
T Consensus 205 i~~L~~~~-~~-vV~ipr~~~~~~~---~~~~~--~~i~~~~vd~~~Ll~~a~l~Ig-----~ggTMa~EAA~LGtPaIs 272 (335)
T PF04007_consen 205 IEELEKYG-RN-VVIIPRYEDQREL---FEKYG--VIIPPEPVDGLDLLYYADLVIG-----GGGTMAREAALLGTPAIS 272 (335)
T ss_pred HHHHHhhC-ce-EEEecCCcchhhH---HhccC--ccccCCCCCHHHHHHhcCEEEe-----CCcHHHHHHHHhCCCEEE
Confidence 55555443 33 5555543333322 22222 3444333333379999999994 346788999999999999
Q ss_pred cCCCc----ccccccCCCEEEeC--CHHHHHHHHHHHHhC
Q 016975 243 ANHPS----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 276 (379)
Q Consensus 243 t~~g~----~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~ 276 (379)
+..|- .+.+.+ .|+++. |++++.+.+.+.+..
T Consensus 273 ~~~g~~~~vd~~L~~--~Gll~~~~~~~ei~~~v~~~~~~ 310 (335)
T PF04007_consen 273 CFPGKLLAVDKYLIE--KGLLYHSTDPDEIVEYVRKNLGK 310 (335)
T ss_pred ecCCcchhHHHHHHH--CCCeEecCCHHHHHHHHHHhhhc
Confidence 86542 233333 366666 999999877765554
No 123
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=97.32 E-value=4.1e-05 Score=63.95 Aligned_cols=102 Identities=16% Similarity=0.120 Sum_probs=52.7
Q ss_pred ecccccccCCCCCCcEEEEcCCcchhhhhcccccccccCcEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcce
Q 016975 17 GVGDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHK 96 (379)
Q Consensus 17 ~~~~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 96 (379)
....+.+.+++.+||+||++.+....+.. .... ..|++.++|+.+...............+........ ...+|.
T Consensus 68 ~~~~~~~~i~~~~~DiVh~~~~~~~~~~~--~~~~--~~~~v~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 142 (177)
T PF13439_consen 68 FMRRLRRLIKKEKPDIVHIHGPPAFWIAL--LACR--KVPIVYTIHGPYFERRFLKSKLSPYSYLNFRIERKL-YKKADR 142 (177)
T ss_dssp HHHHHHHHHHHHT-SEEECCTTHCCCHHH--HHHH--CSCEEEEE-HHH--HHTTTTSCCCHHHHHHCTTHHH-HCCSSE
T ss_pred HHHHHHHHHHHcCCCeEEecccchhHHHH--Hhcc--CCCEEEEeCCCcccccccccccchhhhhhhhhhhhH-HhcCCE
Confidence 34467778888899999998866544431 1111 359999999877421110111111122222222221 123699
Q ss_pred EEEcChhhhhhhh------ccceee-cccCCCCc
Q 016975 97 VIRLSAATQEYAN------SIICNV-HGVNPKFL 123 (379)
Q Consensus 97 vi~~S~~~~~~~~------~~i~~i-~gvd~~~~ 123 (379)
++|+|+.+++... .++.++ ||||++.|
T Consensus 143 ii~vS~~~~~~l~~~~~~~~ki~vI~ngid~~~F 176 (177)
T PF13439_consen 143 IIAVSESTKDELIKFGIPPEKIHVIYNGIDTDRF 176 (177)
T ss_dssp EEESSHHHHHHHHHHT--SS-EEE----B-CCCH
T ss_pred EEEECHHHHHHHHHhCCcccCCEEEECCccHHHc
Confidence 9999988775543 334555 89999877
No 124
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=97.26 E-value=9.7e-06 Score=67.94 Aligned_cols=100 Identities=17% Similarity=0.190 Sum_probs=64.1
Q ss_pred EEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCC-Cc---c--
Q 016975 175 VDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH-PS---N-- 248 (379)
Q Consensus 175 l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~-g~---~-- 248 (379)
++++|.... ..........+.++.++++.++-.++|+.||+.|.-+ -+.++.|++++|+|.|.-.. +. .
T Consensus 35 iv~~G~~~~-~~~~~~~~~~~~~v~~~~~~~~m~~~m~~aDlvIs~a----G~~Ti~E~l~~g~P~I~ip~~~~~~~~q~ 109 (167)
T PF04101_consen 35 IVQTGKNNY-EELKIKVENFNPNVKVFGFVDNMAELMAAADLVISHA----GAGTIAEALALGKPAIVIPLPGAADNHQE 109 (167)
T ss_dssp CCCCTTCEC-HHHCCCHCCTTCCCEEECSSSSHHHHHHHHSEEEECS-----CHHHHHHHHCT--EEEE--TTT-T-CHH
T ss_pred EEEECCCcH-HHHHHHHhccCCcEEEEechhhHHHHHHHcCEEEeCC----CccHHHHHHHcCCCeeccCCCCcchHHHH
Confidence 555676644 3333334444468899999998889999999988543 35789999999999887665 41 1
Q ss_pred ---cccccCCCEEEeC----CHHHHHHHHHHHHhCCCC
Q 016975 249 ---DFFKQFPNCRTYD----DRNGFVEATLKALAEEPA 279 (379)
Q Consensus 249 ---e~i~~~~~g~~~~----~~~~l~~~i~~~l~~~~~ 279 (379)
..+.+...|.... +++.|.++|.+++.++..
T Consensus 110 ~na~~~~~~g~~~~~~~~~~~~~~L~~~i~~l~~~~~~ 147 (167)
T PF04101_consen 110 ENAKELAKKGAAIMLDESELNPEELAEAIEELLSDPEK 147 (167)
T ss_dssp HHHHHHHHCCCCCCSECCC-SCCCHHHHHHCHCCCHH-
T ss_pred HHHHHHHHcCCccccCcccCCHHHHHHHHHHHHcCcHH
Confidence 1233333343332 578899999998887654
No 125
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=97.12 E-value=0.0081 Score=59.49 Aligned_cols=121 Identities=16% Similarity=0.072 Sum_probs=78.9
Q ss_pred ceEEEEEeccc-----ccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHH--hhc
Q 016975 142 KGAYYIGKMVW-----SKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIF--HDY 214 (379)
Q Consensus 142 ~~il~vgrl~~-----~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~--~~~ 214 (379)
.+++..|.... .+-...++++++. .+ .++++..+++... .....++.+.+++++.+ ++ ..+
T Consensus 298 ~V~vS~GS~~~~~~~~~~~~~~~l~a~~~----l~-~~viw~~~~~~~~------~~~p~Nv~i~~w~Pq~~-lL~hp~v 365 (507)
T PHA03392 298 VVYVSFGSSIDTNDMDNEFLQMLLRTFKK----LP-YNVLWKYDGEVEA------INLPANVLTQKWFPQRA-VLKHKNV 365 (507)
T ss_pred EEEEECCCCCcCCCCCHHHHHHHHHHHHh----CC-CeEEEEECCCcCc------ccCCCceEEecCCCHHH-HhcCCCC
Confidence 45666777643 2233445555544 33 4666655433321 12344888889988766 77 457
Q ss_pred CEEEecCCCCcchhHHHHHHHcCCeEEecCC-Cc----ccccccCCCEEEeC----CHHHHHHHHHHHHhCCC
Q 016975 215 KVFLNPSTTDVVCTTTAEALAMGKIVVCANH-PS----NDFFKQFPNCRTYD----DRNGFVEATLKALAEEP 278 (379)
Q Consensus 215 dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~-g~----~e~i~~~~~g~~~~----~~~~l~~~i~~~l~~~~ 278 (379)
++||.- |-..++.||+.+|+|+|+... +. ..-+...+.|...+ +.+++.++|.++++++.
T Consensus 366 ~~fItH----GG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~~l~~~~~t~~~l~~ai~~vl~~~~ 434 (507)
T PHA03392 366 KAFVTQ----GGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDTVTVSAAQLVLAIVDVIENPK 434 (507)
T ss_pred CEEEec----CCcccHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEEEeccCCcCHHHHHHHHHHHhCCHH
Confidence 888843 335679999999999999988 43 22444556676665 78999999999998754
No 126
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=97.03 E-value=0.0038 Score=58.48 Aligned_cols=81 Identities=14% Similarity=0.019 Sum_probs=58.0
Q ss_pred ccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHH
Q 016975 153 SKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAE 232 (379)
Q Consensus 153 ~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~E 232 (379)
.+.+..+++++.++.++. ..+++.|.... +.+++...+.. .+.+.+ +..++|+.||+.+..| |.+++|
T Consensus 182 ~~llP~~~~aa~~L~~~~--~~~~i~~a~~~-~~i~~~~~~~~-~~~~~~---~~~~~m~~aDlal~~S-----GT~TLE 249 (347)
T PRK14089 182 KRLMPIFKELAKKLEGKE--KILVVPSFFKG-KDLKEIYGDIS-EFEISY---DTHKALLEAEFAFICS-----GTATLE 249 (347)
T ss_pred HHHHHHHHHHHHHHhhcC--cEEEEeCCCcH-HHHHHHHhcCC-CcEEec---cHHHHHHhhhHHHhcC-----cHHHHH
Confidence 366677789998887653 67888876543 55565544322 334443 3448999999999887 888899
Q ss_pred HHHcCCeEEecCC
Q 016975 233 ALAMGKIVVCANH 245 (379)
Q Consensus 233 Ama~G~PVI~t~~ 245 (379)
++.+|+|.|..--
T Consensus 250 ~al~g~P~Vv~Yk 262 (347)
T PRK14089 250 AALIGTPFVLAYK 262 (347)
T ss_pred HHHhCCCEEEEEe
Confidence 9999999998543
No 127
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=96.98 E-value=0.00054 Score=63.93 Aligned_cols=96 Identities=16% Similarity=0.108 Sum_probs=65.0
Q ss_pred HHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCC-C--c--ccccccC-CCE-EEeC----CHH----HHHHHHHHH
Q 016975 209 LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH-P--S--NDFFKQF-PNC-RTYD----DRN----GFVEATLKA 273 (379)
Q Consensus 209 ~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~-g--~--~e~i~~~-~~g-~~~~----~~~----~l~~~i~~~ 273 (379)
++.+.|++.|+||++|+||.+..|.--||+|-|+|+. | + .|.+.+. .-| ++++ .++ +|++-+.+.
T Consensus 496 eFVRGCHLGVFPSYYEPWGYTPAECTVMGiPSvtTNlSGFGcfMeehi~d~~ayGIYIvDRRfks~deSv~qL~~~m~~F 575 (692)
T KOG3742|consen 496 EFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSVTTNLSGFGCFMEEHIEDPQAYGIYIVDRRFKSPDESVQQLASFMYEF 575 (692)
T ss_pred HHhccccccccccccCCCCCCchheEEeccccccccccchhhhHHHHhcCchhceEEEEecccCChhhHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999998 3 3 5566554 334 5655 444 444444444
Q ss_pred HhCCCC-CC-----cHHHHhcCCHHHHHHHHHHHHhc
Q 016975 274 LAEEPA-LP-----TEAQRHQLSWESATERFLQVAEL 304 (379)
Q Consensus 274 l~~~~~-~~-----~~~~~~~~sw~~~~~~~~~~~~~ 304 (379)
.....+ ++ .+....-.+|..+..-|.++-.+
T Consensus 576 ~~qsRRQRIiqRNrtErLSdLLDWk~lG~~Y~~aR~l 612 (692)
T KOG3742|consen 576 CKQSRRQRIIQRNRTERLSDLLDWKYLGRYYRKARHL 612 (692)
T ss_pred HHHHHHHHHHHhcchhhHHHHHhHHHHhHHHHHHHHH
Confidence 332221 11 11222567888877766665443
No 128
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.97 E-value=0.006 Score=56.35 Aligned_cols=176 Identities=14% Similarity=0.096 Sum_probs=104.9
Q ss_pred cccCCCCccCccccHHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhhcC-CcEEEEEcCCcChHHHHHHHHhc
Q 016975 116 HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELA-GLEVDLYGNGEDFNQIQEAAEKL 194 (379)
Q Consensus 116 ~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~-~~~l~i~G~g~~~~~l~~~~~~~ 194 (379)
.++|++.|.+-..... ..--+.++|+..+. .++.+-+.+-.-..+.. +-++.+.|.+-....+...-
T Consensus 168 ~a~d~~~~~~i~~da~--------~~~dL~~ign~~pD-r~e~~ke~~~~ps~kl~v~rr~~~~g~~y~~~~~~~~~--- 235 (373)
T COG4641 168 WAVDDSLFHPIPPDAS--------YDVDLNLIGNPYPD-RVEEIKEFFVEPSFKLMVDRRFYVLGPRYPDDIWGRTW--- 235 (373)
T ss_pred ccCCchhcccCCcccc--------ceeeeEEecCCCcc-HHHHHHHHhhccchhhhccceeeecCCccchhhhcccc---
Confidence 4777776655432221 12248888886554 23333333322112222 24567777651111111100
Q ss_pred CCeeEEecCCCCHH---HHHhhcCEEEecCCC---Ccc---hhHHHHHHHcCCeEEecCC-CcccccccCCCEEEeCCHH
Q 016975 195 KIVVRVYPGRDHAD---LIFHDYKVFLNPSTT---DVV---CTTTAEALAMGKIVVCANH-PSNDFFKQFPNCRTYDDRN 264 (379)
Q Consensus 195 ~l~v~~~g~~~~~~---~~~~~~dv~v~ps~~---E~~---~~~~~EAma~G~PVI~t~~-g~~e~i~~~~~g~~~~~~~ 264 (379)
..++...|..+... ..++..+++++-+.. ++. .+-+.|+|+||.|.|+... +..-++.+++.-.++.|..
T Consensus 236 ~~~~~yIg~~~~~~~v~~~~~~~~~~~n~~r~~~~~~l~~~~~RvFeiagc~~~liT~~~~~~e~~f~pgk~~iv~~d~k 315 (373)
T COG4641 236 EPNVQYIGYYNPKDGVPNAFKRDDVTLNINRASIANALFSPTNRVFEIAGCGGFLITDYWKDLEKFFKPGKDIIVYQDSK 315 (373)
T ss_pred cchhhhhhccCccchhhhcccccceeeeecHHHHHhhcCCchhhHHHHhhcCCccccccHHHHHHhcCCchheEEecCHH
Confidence 11344556665533 677777888876543 332 7889999999999998888 4466888887777777999
Q ss_pred HHHHHHHHHHhCCCC--CCcH----HHHhcCCHHHHHHHHHHHHh
Q 016975 265 GFVEATLKALAEEPA--LPTE----AQRHQLSWESATERFLQVAE 303 (379)
Q Consensus 265 ~l~~~i~~~l~~~~~--~~~~----~~~~~~sw~~~~~~~~~~~~ 303 (379)
++.+.+..++..+.. .+.+ +....|+.+.-+..+++...
T Consensus 316 dl~~~~~yll~h~~erkeiae~~ye~V~~~ht~~~r~~~~~~~i~ 360 (373)
T COG4641 316 DLKEKLKYLLNHPDERKEIAECAYERVLARHTYEERIFKLLNEIA 360 (373)
T ss_pred HHHHHHHHHhcCcchHHHHHHhhHHHHHHhccHHHHHHHHHHHHH
Confidence 999999999998755 3333 22355777776666555544
No 129
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=96.64 E-value=0.27 Score=45.37 Aligned_cols=134 Identities=15% Similarity=0.055 Sum_probs=90.3
Q ss_pred cceEEEEE-ecccccCHHHHHHHHHHhHhhcCCcEEEEE-cCCc----ChHHHHHHHHhcCC--eeEEe-cCCCCHH--H
Q 016975 141 AKGAYYIG-KMVWSKGYKELLELLDDHQKELAGLEVDLY-GNGE----DFNQIQEAAEKLKI--VVRVY-PGRDHAD--L 209 (379)
Q Consensus 141 ~~~il~vg-rl~~~Kg~~~li~a~~~l~~~~~~~~l~i~-G~g~----~~~~l~~~~~~~~l--~v~~~-g~~~~~~--~ 209 (379)
++.-+.+| +-++..++.++++++.+.. ..++++++- |-|. ..+++.+.++++-. ++.++ ..++-++ +
T Consensus 184 ~~ltILvGNSgd~sNnHieaL~~L~~~~--~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~eYl~ 261 (360)
T PF07429_consen 184 GKLTILVGNSGDPSNNHIEALEALKQQF--GDDVKIIVPLSYGANNQAYIQQVIQAGKELFGAENFQILTEFMPFDEYLA 261 (360)
T ss_pred CceEEEEcCCCCCCccHHHHHHHHHHhc--CCCeEEEEECCCCCchHHHHHHHHHHHHHhcCccceeEhhhhCCHHHHHH
Confidence 34555677 4678888988887776532 346777663 3332 35667777776533 56665 6788888 9
Q ss_pred HHhhcCEEEecCCC-CcchhHHHHHHHcCCeEEecCC-CcccccccCCCEEEeC----CHHHHHHHHHHHHhCC
Q 016975 210 IFHDYKVFLNPSTT-DVVCTTTAEALAMGKIVVCANH-PSNDFFKQFPNCRTYD----DRNGFVEATLKALAEE 277 (379)
Q Consensus 210 ~~~~~dv~v~ps~~-E~~~~~~~EAma~G~PVI~t~~-g~~e~i~~~~~g~~~~----~~~~l~~~i~~~l~~~ 277 (379)
+++.||+.++.... .|.|+ ++=.+.+|+||+-+.. +.-..+.+...-+++. |...+.++=.++..-+
T Consensus 262 lL~~cDl~if~~~RQQgiGn-I~lLl~~G~~v~L~~~np~~~~l~~~~ipVlf~~d~L~~~~v~ea~rql~~~d 334 (360)
T PF07429_consen 262 LLSRCDLGIFNHNRQQGIGN-ICLLLQLGKKVFLSRDNPFWQDLKEQGIPVLFYGDELDEALVREAQRQLANVD 334 (360)
T ss_pred HHHhCCEEEEeechhhhHhH-HHHHHHcCCeEEEecCChHHHHHHhCCCeEEeccccCCHHHHHHHHHHHhhCc
Confidence 99999999999765 78885 5568999999999998 5444444433333333 6677777666655433
No 130
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=96.58 E-value=0.028 Score=54.09 Aligned_cols=123 Identities=15% Similarity=0.110 Sum_probs=81.9
Q ss_pred eEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCC
Q 016975 143 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPST 222 (379)
Q Consensus 143 ~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~ 222 (379)
+.+..|..... ..+++.+-+..... +.++++...+.+ .. ......++.+.+++++.+ ++..||++|...
T Consensus 240 vyvslGt~~~~---~~l~~~~~~a~~~l-~~~vi~~~~~~~-~~----~~~~p~n~~v~~~~p~~~-~l~~ad~vI~hG- 308 (406)
T COG1819 240 VYVSLGTVGNA---VELLAIVLEALADL-DVRVIVSLGGAR-DT----LVNVPDNVIVADYVPQLE-LLPRADAVIHHG- 308 (406)
T ss_pred EEEEcCCcccH---HHHHHHHHHHHhcC-CcEEEEeccccc-cc----cccCCCceEEecCCCHHH-HhhhcCEEEecC-
Confidence 44455555433 44454444444332 566777664322 11 223344777778888887 999999999764
Q ss_pred CCcchhHHHHHHHcCCeEEecCCCc-----ccccccCCCEEEeC----CHHHHHHHHHHHHhCCCC
Q 016975 223 TDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----DRNGFVEATLKALAEEPA 279 (379)
Q Consensus 223 ~E~~~~~~~EAma~G~PVI~t~~g~-----~e~i~~~~~g~~~~----~~~~l~~~i~~~l~~~~~ 279 (379)
--.++.||+..|+|+|+-..+. .+-+..-..|...+ +++.+.++|.++++++..
T Consensus 309 ---G~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL~~~~~ 371 (406)
T COG1819 309 ---GAGTTSEALYAGVPLVVIPDGADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVLADDSY 371 (406)
T ss_pred ---CcchHHHHHHcCCCEEEecCCcchhHHHHHHHHcCCceecCcccCCHHHHHHHHHHHhcCHHH
Confidence 2347899999999999988754 23455666775544 899999999999998654
No 131
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=96.54 E-value=0.0036 Score=51.02 Aligned_cols=82 Identities=17% Similarity=0.218 Sum_probs=40.0
Q ss_pred ccccccC--CCCCCcEEEEcCCcchhhhhcccccccccC-cEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcc
Q 016975 19 GDISEVI--PDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCH 95 (379)
Q Consensus 19 ~~l~~~l--~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~-~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 95 (379)
..+.+++ .+.+||+||++.+. ..+.. .......+ |+|..+|+...... ..+...+.+.+.++..+ .||
T Consensus 61 ~~~~~~l~~~~~~~Dvv~~~~~~-~~~~~--~~~~~~~~~p~v~~~h~~~~~~~-----~~~~~~~~~~~~~~~~~-~ad 131 (160)
T PF13579_consen 61 RRLRRLLAARRERPDVVHAHSPT-AGLVA--ALARRRRGIPLVVTVHGTLFRRG-----SRWKRRLYRWLERRLLR-RAD 131 (160)
T ss_dssp HHHHHHCHHCT---SEEEEEHHH-HHHHH--HHHHHHHT--EEEE-SS-T-----------HHHHHHHHHHHHHHH-H-S
T ss_pred HHHHHHHhhhccCCeEEEecccc-hhHHH--HHHHHccCCcEEEEECCCchhhc-----cchhhHHHHHHHHHHHh-cCC
Confidence 4567777 88999999999843 22221 11221334 99999998543222 11122222333332211 169
Q ss_pred eEEEcChhhhhhhh
Q 016975 96 KVIRLSAATQEYAN 109 (379)
Q Consensus 96 ~vi~~S~~~~~~~~ 109 (379)
.++++|+..++...
T Consensus 132 ~vi~~S~~~~~~l~ 145 (160)
T PF13579_consen 132 RVIVVSEAMRRYLR 145 (160)
T ss_dssp EEEESSHHHHHHHH
T ss_pred EEEECCHHHHHHHH
Confidence 99999988776543
No 132
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=96.50 E-value=0.022 Score=56.50 Aligned_cols=124 Identities=15% Similarity=0.022 Sum_probs=72.4
Q ss_pred ceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecC
Q 016975 142 KGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPS 221 (379)
Q Consensus 142 ~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps 221 (379)
.+++..|.+.. ...+..++++.+..++.|. ++++.=++.....+ +.++.+..++++.+ +++...+-++-+
T Consensus 278 vv~vsfGs~~~-~~~~~~~~~~~~~~~~~~~-~~iW~~~~~~~~~l-------~~n~~~~~W~PQ~~-lL~hp~v~~fit 347 (500)
T PF00201_consen 278 VVYVSFGSIVS-SMPEEKLKEIAEAFENLPQ-RFIWKYEGEPPENL-------PKNVLIVKWLPQND-LLAHPRVKLFIT 347 (500)
T ss_dssp EEEEE-TSSST-T-HHHHHHHHHHHHHCSTT-EEEEEETCSHGCHH-------HTTEEEESS--HHH-HHTSTTEEEEEE
T ss_pred EEEEecCcccc-hhHHHHHHHHHHHHhhCCC-cccccccccccccc-------cceEEEeccccchh-hhhcccceeeee
Confidence 34555566542 2344434444444444555 56665444322222 22777888998765 777665544333
Q ss_pred CCCcchhHHHHHHHcCCeEEecCC-Cc----ccccccCCCEEEeC----CHHHHHHHHHHHHhCC
Q 016975 222 TTDVVCTTTAEALAMGKIVVCANH-PS----NDFFKQFPNCRTYD----DRNGFVEATLKALAEE 277 (379)
Q Consensus 222 ~~E~~~~~~~EAma~G~PVI~t~~-g~----~e~i~~~~~g~~~~----~~~~l~~~i~~~l~~~ 277 (379)
. |--+++.||+.+|+|+|+-.. |. ...+.+.+.|...+ +.+++.++|.++++|+
T Consensus 348 H--gG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~vl~~~ 410 (500)
T PF00201_consen 348 H--GGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEKGVGVVLDKNDLTEEELRAAIREVLENP 410 (500)
T ss_dssp S----HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHTTSEEEEGGGC-SHHHHHHHHHHHHHSH
T ss_pred c--cccchhhhhhhccCCccCCCCcccCCccceEEEEEeeEEEEEecCCcHHHHHHHHHHHHhhh
Confidence 2 335679999999999999998 54 23455566777666 7899999999999885
No 133
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=96.19 E-value=0.34 Score=42.79 Aligned_cols=147 Identities=12% Similarity=0.034 Sum_probs=82.5
Q ss_pred ceEEEcChhhhhhh---hccceeecccCCCCccCc--cccHHHhhcCCCCCcceEEEEEecccccCH-----HHHHHHHH
Q 016975 95 HKVIRLSAATQEYA---NSIICNVHGVNPKFLEIG--KKKKEQQQNGTHAFAKGAYYIGKMVWSKGY-----KELLELLD 164 (379)
Q Consensus 95 d~vi~~S~~~~~~~---~~~i~~i~gvd~~~~~~~--~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~-----~~li~a~~ 164 (379)
|.||..-+...+.. ..++..++|...+.-... ......+.....+...+.++||.-++.-.+ .++..++.
T Consensus 111 Dlvivp~HD~~~~~s~~~~Nilpi~Gs~h~Vt~~~lAa~~e~~~~~~p~~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~ 190 (329)
T COG3660 111 DLVIVPYHDWREELSDQGPNILPINGSPHNVTSQRLAALREAFKHLLPLPRQRVAVLVGGNNKAFVFQEDKAHQFASLLV 190 (329)
T ss_pred eEEeccchhhhhhhhccCCceeeccCCCCcccHHHhhhhHHHHHhhCCCCCceEEEEecCCCCCCccCHHHHHHHHHHHH
Confidence 77777765433322 234444466553322110 111111223244555678899976655444 23333333
Q ss_pred HhHhhcCCcEEEEEcCCcChHHHHHHHHh-cCC-eeEEecCCCC---HH-HHHhhcCEEEecCCCCcchhHHHHHHHcCC
Q 016975 165 DHQKELAGLEVDLYGNGEDFNQIQEAAEK-LKI-VVRVYPGRDH---AD-LIFHDYKVFLNPSTTDVVCTTTAEALAMGK 238 (379)
Q Consensus 165 ~l~~~~~~~~l~i~G~g~~~~~l~~~~~~-~~l-~v~~~g~~~~---~~-~~~~~~dv~v~ps~~E~~~~~~~EAma~G~ 238 (379)
+..++ ....|++--+....+.+++..+. +.- ...+..+-+. +. +++..||.+|.+..+-+. .-||.+.|+
T Consensus 191 k~l~~-~g~~~lisfSRRTp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Adyii~TaDSinM---~sEAasTgk 266 (329)
T COG3660 191 KILEN-QGGSFLISFSRRTPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADYIISTADSINM---CSEAASTGK 266 (329)
T ss_pred HHHHh-CCceEEEEeecCCcHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcceEEEecchhhh---hHHHhccCC
Confidence 33222 35778887777777778877765 222 3333333322 22 899999999988654332 579999999
Q ss_pred eEEecCC
Q 016975 239 IVVCANH 245 (379)
Q Consensus 239 PVI~t~~ 245 (379)
||-+-..
T Consensus 267 Pv~~~~~ 273 (329)
T COG3660 267 PVFILEP 273 (329)
T ss_pred CeEEEec
Confidence 9988655
No 134
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=95.78 E-value=0.29 Score=45.23 Aligned_cols=104 Identities=16% Similarity=0.085 Sum_probs=66.8
Q ss_pred CCcceEEEEEecccc--cCHH---HHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcC---CeeEEecCC-CCHH-
Q 016975 139 AFAKGAYYIGKMVWS--KGYK---ELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLK---IVVRVYPGR-DHAD- 208 (379)
Q Consensus 139 ~~~~~il~vgrl~~~--Kg~~---~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~---l~v~~~g~~-~~~~- 208 (379)
+.+...+.+|.-+.. -+.+ .+++.+..+.+..+ ..+.|..+.....++.+..++.- ..+.++..- +++-
T Consensus 145 ~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~vttSRRTp~~~~~~L~~~~~~~~~~~~~~~~~~nPy~ 223 (311)
T PF06258_consen 145 PRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYG-GSLLVTTSRRTPPEAEAALRELLKDNPGVYIWDGTGENPYL 223 (311)
T ss_pred CCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCC-CeEEEEcCCCCcHHHHHHHHHhhcCCCceEEecCCCCCcHH
Confidence 344567788854332 2333 56666666666554 78999998776555544443322 245455222 2223
Q ss_pred HHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCC
Q 016975 209 LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHP 246 (379)
Q Consensus 209 ~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g 246 (379)
.+|..||.++.+..+-+ -+.||+++|+||..-..+
T Consensus 224 ~~La~ad~i~VT~DSvS---MvsEA~~tG~pV~v~~l~ 258 (311)
T PF06258_consen 224 GFLAAADAIVVTEDSVS---MVSEAAATGKPVYVLPLP 258 (311)
T ss_pred HHHHhCCEEEEcCccHH---HHHHHHHcCCCEEEecCC
Confidence 99999999999864433 388999999999998874
No 135
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=95.71 E-value=0.012 Score=47.25 Aligned_cols=48 Identities=19% Similarity=0.141 Sum_probs=31.5
Q ss_pred cccccccCCCCCCcEEEEcCCcchhhhhcccccccccCcEEEEeccCh
Q 016975 18 VGDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNY 65 (379)
Q Consensus 18 ~~~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~~vv~~~h~~~ 65 (379)
..++.+++++.+|||||++.+...+..........+..|+|...|+..
T Consensus 63 ~~~l~k~ik~~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~hg~~ 110 (139)
T PF13477_consen 63 YFRLRKIIKKEKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVHGSD 110 (139)
T ss_pred HHHHHHHhccCCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEecCCe
Confidence 346888899999999999987654333201111222248999999754
No 136
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=95.67 E-value=0.63 Score=45.48 Aligned_cols=76 Identities=14% Similarity=0.193 Sum_probs=54.0
Q ss_pred eeEEecCCCCHHHHHhhcCE--EEecCCCCcchhHHHHHHHcCCeEEecCC-Cc----ccccccC-CCEEEeC---CHHH
Q 016975 197 VVRVYPGRDHADLIFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANH-PS----NDFFKQF-PNCRTYD---DRNG 265 (379)
Q Consensus 197 ~v~~~g~~~~~~~~~~~~dv--~v~ps~~E~~~~~~~EAma~G~PVI~t~~-g~----~e~i~~~-~~g~~~~---~~~~ 265 (379)
+..+.+++++.+ ++...++ ||.- -| -++++||+++|+|+|+... +. ...+.+. +.|+.+. +.++
T Consensus 325 ~g~v~~w~PQ~~-iL~h~~v~~fvtH---~G-~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~ 399 (451)
T PLN02410 325 RGYIVKWAPQKE-VLSHPAVGGFWSH---CG-WNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVEGDLDRGA 399 (451)
T ss_pred CeEEEccCCHHH-HhCCCccCeeeec---Cc-hhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeCCcccHHH
Confidence 556678888887 6766555 6532 23 3479999999999999887 33 2233333 5676663 8899
Q ss_pred HHHHHHHHHhCC
Q 016975 266 FVEATLKALAEE 277 (379)
Q Consensus 266 l~~~i~~~l~~~ 277 (379)
+++++.+++.++
T Consensus 400 v~~av~~lm~~~ 411 (451)
T PLN02410 400 VERAVKRLMVEE 411 (451)
T ss_pred HHHHHHHHHcCC
Confidence 999999999764
No 137
>PRK14986 glycogen phosphorylase; Provisional
Probab=95.53 E-value=0.13 Score=52.97 Aligned_cols=131 Identities=13% Similarity=0.078 Sum_probs=92.0
Q ss_pred CCCcceEEEEEecccccCHHH-HHHH---HHHhHhhc----CCcEEEEEcCC-cC-------hHHHHHHHH------hcC
Q 016975 138 HAFAKGAYYIGKMVWSKGYKE-LLEL---LDDHQKEL----AGLEVDLYGNG-ED-------FNQIQEAAE------KLK 195 (379)
Q Consensus 138 ~~~~~~il~vgrl~~~Kg~~~-li~a---~~~l~~~~----~~~~l~i~G~g-~~-------~~~l~~~~~------~~~ 195 (379)
.++...++++-|+...|...+ ++.. +.++++.- ...++++.|.. |. ...+.+.++ ..+
T Consensus 540 dp~sLfd~qakR~heYKRq~LNil~~i~ry~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIk~I~~va~~in~Dp~v~ 619 (815)
T PRK14986 540 NPKALFDVQIKRIHEYKRQLMNVLHVITRYNRIKADPDAKWVPRVNIFAGKAASAYYMAKHIIHLINDVAKVINNDPQIG 619 (815)
T ss_pred CcccceeeeehhhhhhhhhhHHHhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhccChhhc
Confidence 455667777779999999988 5555 44444331 24788888842 22 122223333 122
Q ss_pred --CeeEEecCC--CCHHHHHhhcCEEEecCC--CCcchhHHHHHHHcCCeEEecCCCc-cccccc--CCCEEEeC-CHHH
Q 016975 196 --IVVRVYPGR--DHADLIFHDYKVFLNPST--TDVVCTTTAEALAMGKIVVCANHPS-NDFFKQ--FPNCRTYD-DRNG 265 (379)
Q Consensus 196 --l~v~~~g~~--~~~~~~~~~~dv~v~ps~--~E~~~~~~~EAma~G~PVI~t~~g~-~e~i~~--~~~g~~~~-~~~~ 265 (379)
+.|.|+... .-.+.++..+||-.+.|. .|+.|+.=+=||.-|.+-++|-.|. .|+..+ ++||+++. +.++
T Consensus 620 ~~lkVVFlenY~vslAe~lipg~Dv~eqis~ag~EASGTsnMK~alNGaLtlgtlDG~nvEi~e~vG~eN~~~fG~~~~e 699 (815)
T PRK14986 620 DKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEMLEHVGEENIFIFGNTAEE 699 (815)
T ss_pred CceeEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCcchhhHHhcCceeeeccCCchhHHHHhcCCCcEEEeCCCHHH
Confidence 256677554 444489999999999887 4999999999999999999999988 666654 78999998 7777
Q ss_pred HHH
Q 016975 266 FVE 268 (379)
Q Consensus 266 l~~ 268 (379)
..+
T Consensus 700 v~~ 702 (815)
T PRK14986 700 VEA 702 (815)
T ss_pred HHH
Confidence 655
No 138
>PLN02562 UDP-glycosyltransferase
Probab=95.52 E-value=0.16 Score=49.54 Aligned_cols=125 Identities=11% Similarity=-0.005 Sum_probs=74.1
Q ss_pred ceEEEEEecc---cccCHHHHHHHHHHhHhhcCCcEEEEEcCCc---ChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcC
Q 016975 142 KGAYYIGKMV---WSKGYKELLELLDDHQKELAGLEVDLYGNGE---DFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYK 215 (379)
Q Consensus 142 ~~il~vgrl~---~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~---~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~d 215 (379)
.+++..|... ..+-+..+..+++.. ...+ ++.+..+. ..+.+.+. ...++.+.+++++.+ ++...+
T Consensus 275 vvyvsfGS~~~~~~~~~~~~l~~~l~~~---g~~f-iW~~~~~~~~~l~~~~~~~---~~~~~~v~~w~PQ~~-iL~h~~ 346 (448)
T PLN02562 275 VIYISFGSWVSPIGESNVRTLALALEAS---GRPF-IWVLNPVWREGLPPGYVER---VSKQGKVVSWAPQLE-VLKHQA 346 (448)
T ss_pred eEEEEecccccCCCHHHHHHHHHHHHHC---CCCE-EEEEcCCchhhCCHHHHHH---hccCEEEEecCCHHH-HhCCCc
Confidence 4556677653 334455555555543 2223 33343221 11122222 223667778888777 777766
Q ss_pred EEEecCCCCcchhHHHHHHHcCCeEEecCC-Cc----cccccc-CCCEEEeC--CHHHHHHHHHHHHhC
Q 016975 216 VFLNPSTTDVVCTTTAEALAMGKIVVCANH-PS----NDFFKQ-FPNCRTYD--DRNGFVEATLKALAE 276 (379)
Q Consensus 216 v~v~ps~~E~~~~~~~EAma~G~PVI~t~~-g~----~e~i~~-~~~g~~~~--~~~~l~~~i~~~l~~ 276 (379)
+..+-++ -| -++++||+++|+|+|+... +. ...+.+ ...|+-+. +.+++.+++.+++.+
T Consensus 347 v~~fvtH-~G-~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~l~~~v~~~l~~ 413 (448)
T PLN02562 347 VGCYLTH-CG-WNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRISGFGQKEVEEGLRKVMED 413 (448)
T ss_pred cceEEec-Cc-chhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeEeCCCCHHHHHHHHHHHhCC
Confidence 5444332 22 4579999999999999888 43 223333 35566664 889999999999865
No 139
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=95.44 E-value=0.12 Score=53.22 Aligned_cols=131 Identities=11% Similarity=0.036 Sum_probs=92.4
Q ss_pred CCCcceEEEEEecccccCHHH-HHHH---HHHhHhhc----CCcEEEEEcCC-cC---hH----HHHHHHHh------cC
Q 016975 138 HAFAKGAYYIGKMVWSKGYKE-LLEL---LDDHQKEL----AGLEVDLYGNG-ED---FN----QIQEAAEK------LK 195 (379)
Q Consensus 138 ~~~~~~il~vgrl~~~Kg~~~-li~a---~~~l~~~~----~~~~l~i~G~g-~~---~~----~l~~~~~~------~~ 195 (379)
.++....+++-|+...|...+ ++.. +.++++.- ...++++.|.. |. -+ .+...++. .+
T Consensus 527 dp~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~v~ 606 (797)
T cd04300 527 DPDSLFDVQVKRIHEYKRQLLNVLHIIHLYNRIKENPNADIVPRTFIFGGKAAPGYYMAKLIIKLINAVADVVNNDPDVG 606 (797)
T ss_pred CCCccEEEEeeechhhhhhhhHHHhhHHHHHHHHhCCCcCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHhccChhcC
Confidence 566777888889999999998 5544 55555431 23778888842 22 11 22223332 11
Q ss_pred --CeeEEecCC--CCHHHHHhhcCEEEecCC--CCcchhHHHHHHHcCCeEEecCCCc-cccccc--CCCEEEeC-CHHH
Q 016975 196 --IVVRVYPGR--DHADLIFHDYKVFLNPST--TDVVCTTTAEALAMGKIVVCANHPS-NDFFKQ--FPNCRTYD-DRNG 265 (379)
Q Consensus 196 --l~v~~~g~~--~~~~~~~~~~dv~v~ps~--~E~~~~~~~EAma~G~PVI~t~~g~-~e~i~~--~~~g~~~~-~~~~ 265 (379)
+.|.|+... .-.+.++..|||-.+.|. .|+.|+.=+=+|.-|.+.++|-.|. .|+... .+|++++- +.++
T Consensus 607 ~~lkVVFlenY~VslAe~iipaaDvseqis~ag~EASGTsnMK~~lNGaltlgtlDGanvEi~e~vG~eN~fiFG~~~~e 686 (797)
T cd04300 607 DKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIAEEVGEENIFIFGLTAEE 686 (797)
T ss_pred CceEEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCCchhhHHhcCceeeecccchhHHHHHHhCcCcEEEeCCCHHH
Confidence 256677553 444599999999999887 4999999999999999999999988 666554 68999998 7777
Q ss_pred HHH
Q 016975 266 FVE 268 (379)
Q Consensus 266 l~~ 268 (379)
..+
T Consensus 687 v~~ 689 (797)
T cd04300 687 VEA 689 (797)
T ss_pred HHH
Confidence 654
No 140
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=95.42 E-value=0.11 Score=49.42 Aligned_cols=177 Identities=9% Similarity=-0.005 Sum_probs=82.4
Q ss_pred cceEEEcChhhhhhhhccc-----ee-ecccCCC-C-ccCcccc--HHHhhcCCCCCcceEEEEEecccccCH------H
Q 016975 94 CHKVIRLSAATQEYANSII-----CN-VHGVNPK-F-LEIGKKK--KEQQQNGTHAFAKGAYYIGKMVWSKGY------K 157 (379)
Q Consensus 94 ~d~vi~~S~~~~~~~~~~i-----~~-i~gvd~~-~-~~~~~~~--~~~~~~~~~~~~~~il~vgrl~~~Kg~------~ 157 (379)
+|.+++.|+..++...+.. .. +.|..-. . +...... ......+...++++|+|+-........ .
T Consensus 135 ~d~~~~~s~~~~~~~~~~f~~~~~~i~~~G~PR~D~l~~~~~~~~~~i~~~~~~~~~~k~ILyaPT~R~~~~~~~~~~~~ 214 (369)
T PF04464_consen 135 YDYFIVSSEFEKEIFKKAFGYPEDKILVTGYPRNDYLFNKSKENRNRIKKKLGIDKDKKVILYAPTWRDNSSNEYFKFFF 214 (369)
T ss_dssp -SEEEESSHHHHHHHHHHTT--GGGEEES--GGGHHHHHSTT-HHHHHHHHTT--SS-EEEEEE----GGG--GGSS---
T ss_pred CcEEEECCHHHHHHHHHHhccCcceEEEeCCCeEhHHhccCHHHHHHHHHHhccCCCCcEEEEeeccccccccccccccc
Confidence 4999999988776554321 11 1344421 1 1111111 112233445567789998654322221 1
Q ss_pred HHH--HHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHH
Q 016975 158 ELL--ELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALA 235 (379)
Q Consensus 158 ~li--~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma 235 (379)
..+ +.+. .....++.+++-............ .....++.+...-.+..+++..||++|- -++-++.|++.
T Consensus 215 ~~~~~~~l~--~~~~~~~~li~k~Hp~~~~~~~~~-~~~~~~i~~~~~~~~~~~ll~~aDiLIT-----DySSi~fD~~~ 286 (369)
T PF04464_consen 215 SDLDFEKLN--FLLKNNYVLIIKPHPNMKKKFKDF-KEDNSNIIFVSDNEDIYDLLAAADILIT-----DYSSIIFDFLL 286 (369)
T ss_dssp -TT-HHHHH--HHHTTTEEEEE--SHHHHTT-----TT-TTTEEE-TT-S-HHHHHHT-SEEEE-----SS-THHHHHGG
T ss_pred cccCHHHHH--HHhCCCcEEEEEeCchhhhchhhh-hccCCcEEECCCCCCHHHHHHhcCEEEE-----echhHHHHHHH
Confidence 222 2222 222357877765421111111111 2223355555544555599999999983 24558999999
Q ss_pred cCCeEEecCC---------CcccccccCCCEEEeCCHHHHHHHHHHHHhCCC
Q 016975 236 MGKIVVCANH---------PSNDFFKQFPNCRTYDDRNGFVEATLKALAEEP 278 (379)
Q Consensus 236 ~G~PVI~t~~---------g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~~~~ 278 (379)
+++|||.-.. |..-...+...|-++.|.++|.++|...+.++.
T Consensus 287 l~KPiify~~D~~~Y~~~rg~~~~~~~~~pg~~~~~~~eL~~~i~~~~~~~~ 338 (369)
T PF04464_consen 287 LNKPIIFYQPDLEEYEKERGFYFDYEEDLPGPIVYNFEELIEAIENIIENPD 338 (369)
T ss_dssp GT--EEEE-TTTTTTTTTSSBSS-TTTSSSS-EESSHHHHHHHHTTHHHHHH
T ss_pred hCCCEEEEeccHHHHhhccCCCCchHhhCCCceeCCHHHHHHHHHhhhhCCH
Confidence 9999995432 111123344557778899999999999877543
No 141
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=95.25 E-value=0.14 Score=52.03 Aligned_cols=128 Identities=14% Similarity=0.106 Sum_probs=89.9
Q ss_pred CCCcceEEEEEecccccCHHHHHHHHHHhHh-----hcCCcEEEEEcCC-cC-------hHHHHHHHHhc--CCeeEEec
Q 016975 138 HAFAKGAYYIGKMVWSKGYKELLELLDDHQK-----ELAGLEVDLYGNG-ED-------FNQIQEAAEKL--KIVVRVYP 202 (379)
Q Consensus 138 ~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~-----~~~~~~l~i~G~g-~~-------~~~l~~~~~~~--~l~v~~~g 202 (379)
.++...++++=|+...|.....+.-+..+.+ ..|.+.+++.|.- |. ...+...++.. .++|.|+.
T Consensus 484 ~p~~lfd~~~kRiheYKRq~Lnl~~i~~ly~~i~~d~~prv~~iFaGKAhP~y~~aK~iIk~I~~~a~~in~~lkVvFl~ 563 (750)
T COG0058 484 DPNALFDGQARRIHEYKRQLLNLLDIERLYRILKEDWVPRVQIIFAGKAHPADYAAKEIIKLINDVADVINNKLKVVFLP 563 (750)
T ss_pred CCCcceeeeehhhhhhhhhHHhHhhHHHHHHHHhcCCCCceEEEEeccCCCcchHHHHHHHHHHHHHHhhcccceEEEeC
Confidence 3556778888899999988876644444432 2355766777842 22 12223333332 34677876
Q ss_pred CCC--CHHHHHhhcCEEEecCCC--CcchhHHHHHHHcCCeEEecCCCc-ccccc--cCCCEEEeC-CHHH
Q 016975 203 GRD--HADLIFHDYKVFLNPSTT--DVVCTTTAEALAMGKIVVCANHPS-NDFFK--QFPNCRTYD-DRNG 265 (379)
Q Consensus 203 ~~~--~~~~~~~~~dv~v~ps~~--E~~~~~~~EAma~G~PVI~t~~g~-~e~i~--~~~~g~~~~-~~~~ 265 (379)
..+ -.+.++..+||-.+.|.. |+.|+.-+=||--|.+-|+|-.|. .|+.+ ++.||+++. +.++
T Consensus 564 nYdvslA~~iipa~Dvweqis~a~~EASGTsnMK~alNGaltigtlDGanvEi~e~vg~~N~~~fG~~~~~ 634 (750)
T COG0058 564 NYDVSLAELLIPAADVWEQIPTAGKEASGTSNMKAALNGALTLGTLDGANVEIYEHVGGENGWIFGETVEE 634 (750)
T ss_pred CCChhHHHhhcccccccccCCCCCccccCcCcchHHhcCCceeeccccHHHHHHHhcCCCceEEeCCchhh
Confidence 654 334889999999998874 999999999999999999999998 66664 889999988 4433
No 142
>PLN02448 UDP-glycosyltransferase family protein
Probab=94.97 E-value=0.24 Score=48.61 Aligned_cols=125 Identities=16% Similarity=0.066 Sum_probs=73.1
Q ss_pred cceEEEEEeccc--ccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEE
Q 016975 141 AKGAYYIGKMVW--SKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFL 218 (379)
Q Consensus 141 ~~~il~vgrl~~--~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v 218 (379)
..+.+..|.... .+-+..++++++.. +..|+++..++ ...+.+.. ..++.+.+++++.+ ++...++..
T Consensus 275 ~vvyvsfGs~~~~~~~~~~~~~~~l~~~-----~~~~lw~~~~~-~~~~~~~~---~~~~~v~~w~pQ~~-iL~h~~v~~ 344 (459)
T PLN02448 275 SVLYVSLGSFLSVSSAQMDEIAAGLRDS-----GVRFLWVARGE-ASRLKEIC---GDMGLVVPWCDQLK-VLCHSSVGG 344 (459)
T ss_pred ceEEEeecccccCCHHHHHHHHHHHHhC-----CCCEEEEEcCc-hhhHhHhc---cCCEEEeccCCHHH-HhccCccce
Confidence 345566666532 22344555555432 45566554332 12222222 12566678887776 777777633
Q ss_pred ecCCCCcchhHHHHHHHcCCeEEecCCCc-----cccccc-CCCEEEe--------C-CHHHHHHHHHHHHhCC
Q 016975 219 NPSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQ-FPNCRTY--------D-DRNGFVEATLKALAEE 277 (379)
Q Consensus 219 ~ps~~E~~~~~~~EAma~G~PVI~t~~g~-----~e~i~~-~~~g~~~--------~-~~~~l~~~i~~~l~~~ 277 (379)
+-+ -+--++++||+++|+|+|+-.... ...+.+ -+.|+-+ . +.+++.+++.+++.++
T Consensus 345 fvt--HgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~ 416 (459)
T PLN02448 345 FWT--HCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLE 416 (459)
T ss_pred EEe--cCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCC
Confidence 332 223458999999999999988843 123333 2345443 1 7789999999999865
No 143
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=94.67 E-value=0.46 Score=48.33 Aligned_cols=131 Identities=13% Similarity=0.058 Sum_probs=81.3
Q ss_pred CCCcceEEEEEecccccCHHHH----HHHHHHhHhh----cCCcEEEEEcCC-cC---hHHHHHH----HH------hcC
Q 016975 138 HAFAKGAYYIGKMVWSKGYKEL----LELLDDHQKE----LAGLEVDLYGNG-ED---FNQIQEA----AE------KLK 195 (379)
Q Consensus 138 ~~~~~~il~vgrl~~~Kg~~~l----i~a~~~l~~~----~~~~~l~i~G~g-~~---~~~l~~~----~~------~~~ 195 (379)
.++....+++-|+...|...+. ++.+.++++. ...+++++.|.- |. -+++.+. ++ ..+
T Consensus 441 dp~slfdv~~rR~heYKRq~LniL~ii~~y~rik~~p~~~~~Pv~~IFaGKAhP~d~~gK~iIk~I~~va~~in~Dp~v~ 520 (713)
T PF00343_consen 441 DPDSLFDVQARRFHEYKRQLLNILHIIDRYNRIKNNPNKKIRPVQFIFAGKAHPGDYMGKEIIKLINNVAEVINNDPEVG 520 (713)
T ss_dssp -TTSEEEEEES-SCCCCTHHHHHHHHHHHHHHHHHSTTSCCS-EEEEEE----TT-HHHHHHHHHHHHHHHHHCT-TTTC
T ss_pred CcchhhhhhhhhcccccccCcccccHHHHHHHHHhcccCCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHHhcChhhc
Confidence 4566678888899999998883 3455555543 134789999942 22 1222222 22 111
Q ss_pred --CeeEEecCCC--CHHHHHhhcCEEEecCCC--CcchhHHHHHHHcCCeEEecCCCc-ccccc--cCCCEEEeC-CHHH
Q 016975 196 --IVVRVYPGRD--HADLIFHDYKVFLNPSTT--DVVCTTTAEALAMGKIVVCANHPS-NDFFK--QFPNCRTYD-DRNG 265 (379)
Q Consensus 196 --l~v~~~g~~~--~~~~~~~~~dv~v~ps~~--E~~~~~~~EAma~G~PVI~t~~g~-~e~i~--~~~~g~~~~-~~~~ 265 (379)
+.|.|+...+ -.+.++..+||-.+.|+. |+.|+.-+=||.-|.+-++|-.|. .|+.. ...|++++- +.++
T Consensus 521 ~~lkVvFlenYdvslA~~lipg~DVwln~p~~p~EASGTSgMK~~~NGaL~lstlDG~niEi~e~vG~eN~fiFG~~~~e 600 (713)
T PF00343_consen 521 DRLKVVFLENYDVSLAEKLIPGVDVWLNIPTRPKEASGTSGMKAAMNGALNLSTLDGWNIEIAEAVGEENIFIFGLTAEE 600 (713)
T ss_dssp CGEEEEEETT-SHHHHHHHGGG-SEEEE---TTSSSS-SHHHHHHHTT-EEEEESSTCHHHHHHHH-GGGSEEES-BHHH
T ss_pred cceeEEeecCCcHHHHHHHhhhhhhhhhCCCCCccccCCCcchhhcCCCeEEecccchhHHHHHhcCCCcEEEcCCCHHH
Confidence 2567776544 333899999999999874 999999999999999999999988 66553 246889988 7776
Q ss_pred HHH
Q 016975 266 FVE 268 (379)
Q Consensus 266 l~~ 268 (379)
..+
T Consensus 601 v~~ 603 (713)
T PF00343_consen 601 VEE 603 (713)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 144
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=94.58 E-value=0.75 Score=41.56 Aligned_cols=100 Identities=14% Similarity=0.111 Sum_probs=62.7
Q ss_pred CcceEEEEEecccc-------cCHHHHHHHHHHhHhhcCCcEEEEEcCC-----cChHHHHHHHHhcCCeeEEecCCCCH
Q 016975 140 FAKGAYYIGKMVWS-------KGYKELLELLDDHQKELAGLEVDLYGNG-----EDFNQIQEAAEKLKIVVRVYPGRDHA 207 (379)
Q Consensus 140 ~~~~il~vgrl~~~-------Kg~~~li~a~~~l~~~~~~~~l~i~G~g-----~~~~~l~~~~~~~~l~v~~~g~~~~~ 207 (379)
+++.|++....... .+...+++.+..+.+..|+.+++|-=.. .....+.+... ..++.+...--+.
T Consensus 116 ~~~~vlv~lQ~~~D~~i~~~~~~~~~~~~~l~~~~~~~p~~~lvvK~HP~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 193 (269)
T PF05159_consen 116 NKKYVLVPLQVENDSQIRYHSPSQADFLDMLESFAKENPDAKLVVKPHPDERGGNKYSYLEELPN--LPNVVIIDDDVNL 193 (269)
T ss_pred CCCEEEEEeeCCcCcchhccCCcHhHHHHHHHHHHHHCCCCEEEEEECchhhCCCChhHhhhhhc--CCCeEEECCCCCH
Confidence 35567777765433 3566777888888777888887764421 11212222111 1244444333344
Q ss_pred HHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCC
Q 016975 208 DLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHP 246 (379)
Q Consensus 208 ~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g 246 (379)
.+++..||.++--+ +.+-+||+.+|+|||+-..+
T Consensus 194 ~~Ll~~s~~Vvtin-----StvGlEAll~gkpVi~~G~~ 227 (269)
T PF05159_consen 194 YELLEQSDAVVTIN-----STVGLEALLHGKPVIVFGRA 227 (269)
T ss_pred HHHHHhCCEEEEEC-----CHHHHHHHHcCCceEEecCc
Confidence 48999999887553 45789999999999996653
No 145
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=94.36 E-value=0.65 Score=45.72 Aligned_cols=146 Identities=19% Similarity=0.207 Sum_probs=91.6
Q ss_pred eEEEEEec-ccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHH--HHHhhcCEEEe
Q 016975 143 GAYYIGKM-VWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLN 219 (379)
Q Consensus 143 ~il~vgrl-~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~--~~~~~~dv~v~ 219 (379)
..+..|+- ...||-+..++++.+. -.++-.|.+.......+...+ +=+|.++..+ .+++.+.+||=
T Consensus 279 ~AlVyGK~~~~w~~k~~~l~~l~~~----~eih~tV~~~~~~~~~~P~~V-------~NHG~l~~~ef~~lL~~akvfiG 347 (559)
T PF15024_consen 279 QALVYGKERYMWKGKEKYLDVLHKY----MEIHGTVYDEPQRPPNVPSFV-------KNHGILSGDEFQQLLRKAKVFIG 347 (559)
T ss_pred eeEEEccchhhhcCcHHHHHHHHhh----cEEEEEeccCCCCCcccchhh-------hhcCcCCHHHHHHHHHhhhEeee
Confidence 44444532 2245666666666442 345555554333222233322 2257777777 99999999994
Q ss_pred cCC-CCcchhHHHHHHHcCCeEEecCC-Ccc-----ccc-------------------ccCCCEEEeC--CHHHHHHHHH
Q 016975 220 PST-TDVVCTTTAEALAMGKIVVCANH-PSN-----DFF-------------------KQFPNCRTYD--DRNGFVEATL 271 (379)
Q Consensus 220 ps~-~E~~~~~~~EAma~G~PVI~t~~-g~~-----e~i-------------------~~~~~g~~~~--~~~~l~~~i~ 271 (379)
... +| |-+-+||+|+|+|.|-... +.. +++ .+.+.-+.++ |.+++.+||.
T Consensus 348 lGfP~E--gPaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQhPY~e~~iG~PhVytVd~~n~~~v~~Avk 425 (559)
T PF15024_consen 348 LGFPYE--GPAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTSQHPYAEEFIGEPHVYTVDINNSTEVEAAVK 425 (559)
T ss_pred cCCCCC--CCChHHHHHcCCccccccCCCCCcccccccccCCCCcceeccCChHHHhhCCCCeEEEEcCCCHHHHHHHHH
Confidence 432 45 3468999999999998775 321 111 1223335566 9999999999
Q ss_pred HHHhCCCCCCcHHHHhcCCHHHHHHHHHHHHhc
Q 016975 272 KALAEEPALPTEAQRHQLSWESATERFLQVAEL 304 (379)
Q Consensus 272 ~~l~~~~~~~~~~~~~~~sw~~~~~~~~~~~~~ 304 (379)
+++..+..+.-. ..|+-+.+.+|+..+++.
T Consensus 426 ~il~~~v~Py~P---~efT~egmLeRv~~~ie~ 455 (559)
T PF15024_consen 426 AILATPVEPYLP---YEFTCEGMLERVNALIEK 455 (559)
T ss_pred HHHhcCCCCcCC---cccCHHHHHHHHHHHHHh
Confidence 999987543322 358888899998888774
No 146
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=94.33 E-value=0.25 Score=50.88 Aligned_cols=132 Identities=14% Similarity=0.086 Sum_probs=91.6
Q ss_pred CCCcceEEEEEecccccCHHH-HHHH---HHHhHhh----cCCcEEEEEcCC-cC---hHH----HHHHHHh------c-
Q 016975 138 HAFAKGAYYIGKMVWSKGYKE-LLEL---LDDHQKE----LAGLEVDLYGNG-ED---FNQ----IQEAAEK------L- 194 (379)
Q Consensus 138 ~~~~~~il~vgrl~~~Kg~~~-li~a---~~~l~~~----~~~~~l~i~G~g-~~---~~~----l~~~~~~------~- 194 (379)
.++....+++-|+...|...+ ++.. +.++++. ....++++.|.. |. -+. +...++. .
T Consensus 524 dp~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~iN~Dp~v~ 603 (794)
T TIGR02093 524 DPNSIFDVQVKRLHEYKRQLLNVLHVIYLYNRIKEDPPKDIVPRTVIFGGKAAPGYHMAKLIIKLINSVAEVVNNDPAVG 603 (794)
T ss_pred CccccchhhheechhhhHHHHHHhhhHHHHHHHHhCCCcCCCCeEEEEEecCCCCcHHHHHHHHHHHHHHHHhccChhhC
Confidence 455666777889999999988 5555 4444432 124678888842 22 122 2222322 1
Q ss_pred -CCeeEEecCC--CCHHHHHhhcCEEEecCCC--CcchhHHHHHHHcCCeEEecCCCc-cccccc--CCCEEEeC-CHHH
Q 016975 195 -KIVVRVYPGR--DHADLIFHDYKVFLNPSTT--DVVCTTTAEALAMGKIVVCANHPS-NDFFKQ--FPNCRTYD-DRNG 265 (379)
Q Consensus 195 -~l~v~~~g~~--~~~~~~~~~~dv~v~ps~~--E~~~~~~~EAma~G~PVI~t~~g~-~e~i~~--~~~g~~~~-~~~~ 265 (379)
.+.|.|+... .-.+.++..+|+-.+.|.. |+.|+.=+=+|.-|.+-++|-.|. .|+... ++|++++- +.++
T Consensus 604 ~~lkVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMK~alNGaltlgtlDGanvEi~e~vG~eN~fiFG~~~~e 683 (794)
T TIGR02093 604 DKLKVVFVPNYNVSLAELIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIREEVGAENIFIFGLTVEE 683 (794)
T ss_pred CceeEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCcchhHHHhcCcceeecccchhHHHHHHhCcccEEEcCCCHHH
Confidence 1256677554 4445999999999998874 999999999999999999999988 666554 68999998 7777
Q ss_pred HHHH
Q 016975 266 FVEA 269 (379)
Q Consensus 266 l~~~ 269 (379)
..+.
T Consensus 684 v~~~ 687 (794)
T TIGR02093 684 VEAL 687 (794)
T ss_pred HHHH
Confidence 6553
No 147
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=94.20 E-value=1.1 Score=41.41 Aligned_cols=130 Identities=17% Similarity=0.120 Sum_probs=78.0
Q ss_pred cceEEEEEecccccCHHHHHHHHHHhHhhcCCc---EEEEEcCCcChHHHHHHHHhcC--CeeEEecCCCCHHHHHhhcC
Q 016975 141 AKGAYYIGKMVWSKGYKELLELLDDHQKELAGL---EVDLYGNGEDFNQIQEAAEKLK--IVVRVYPGRDHADLIFHDYK 215 (379)
Q Consensus 141 ~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~---~l~i~G~g~~~~~l~~~~~~~~--l~v~~~g~~~~~~~~~~~~d 215 (379)
..+++.+|.- .-|.+.+..++.... ..+++ -++|.|.--..++.++....-. .+++++.+..+..+++..|+
T Consensus 220 ~~Ilvs~GGG--~dG~eLi~~~l~A~~-~l~~l~~~~~ivtGP~MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~ 296 (400)
T COG4671 220 FDILVSVGGG--ADGAELIETALAAAQ-LLAGLNHKWLIVTGPFMPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGAR 296 (400)
T ss_pred ceEEEecCCC--hhhHHHHHHHHHHhh-hCCCCCcceEEEeCCCCCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhh
Confidence 3456666642 344444443333322 12333 3667775444444444433332 38889999999999999999
Q ss_pred EEEecCCCCcchhHHHHHHHcCCeEEecCC--Cccccc-c-----c-CCCEEEeC---CHHHHHHHHHHHHhCC
Q 016975 216 VFLNPSTTDVVCTTTAEALAMGKIVVCANH--PSNDFF-K-----Q-FPNCRTYD---DRNGFVEATLKALAEE 277 (379)
Q Consensus 216 v~v~ps~~E~~~~~~~EAma~G~PVI~t~~--g~~e~i-~-----~-~~~g~~~~---~~~~l~~~i~~~l~~~ 277 (379)
..|.-+-+ +|+.|-+++|||.+.-.. |..|.. . . +-..++-+ +++.|+++|..+++.|
T Consensus 297 ~vVSm~GY----NTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL~dvL~pe~lt~~~La~al~~~l~~P 366 (400)
T COG4671 297 LVVSMGGY----NTVCEILSFGKPALIVPRAAPREEQLIRAQRLEELGLVDVLLPENLTPQNLADALKAALARP 366 (400)
T ss_pred eeeecccc----hhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCcceeeCcccCChHHHHHHHHhcccCC
Confidence 99966533 568899999999877665 444421 1 1 11223333 7788888888877753
No 148
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=94.07 E-value=0.18 Score=51.74 Aligned_cols=131 Identities=16% Similarity=0.087 Sum_probs=90.4
Q ss_pred CCCcceEEEEEecccccCHHH-HHHHHH---HhHhh----cCCcEEEEEcCC-cC---hHH----HHHHHHhc-------
Q 016975 138 HAFAKGAYYIGKMVWSKGYKE-LLELLD---DHQKE----LAGLEVDLYGNG-ED---FNQ----IQEAAEKL------- 194 (379)
Q Consensus 138 ~~~~~~il~vgrl~~~Kg~~~-li~a~~---~l~~~----~~~~~l~i~G~g-~~---~~~----l~~~~~~~------- 194 (379)
.++...++++-|+...|...+ ++..+. ++++. ....++++.|.. |. -+. +...++..
T Consensus 526 dp~slfdvq~kR~heYKRq~Lnil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~v~ 605 (798)
T PRK14985 526 NPQAIFDVQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVAEVINNDPLVG 605 (798)
T ss_pred CchhcchhhHhhhhhhhhhhhHhhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhcCChhhC
Confidence 455556667779999999988 655544 44432 023778888842 22 122 22233222
Q ss_pred -CCeeEEecCC--CCHHHHHhhcCEEEecCC--CCcchhHHHHHHHcCCeEEecCCCc-cccccc--CCCEEEeC-CHHH
Q 016975 195 -KIVVRVYPGR--DHADLIFHDYKVFLNPST--TDVVCTTTAEALAMGKIVVCANHPS-NDFFKQ--FPNCRTYD-DRNG 265 (379)
Q Consensus 195 -~l~v~~~g~~--~~~~~~~~~~dv~v~ps~--~E~~~~~~~EAma~G~PVI~t~~g~-~e~i~~--~~~g~~~~-~~~~ 265 (379)
.+.|.|+... .-.+.++..+|+-.+.|. .|+.|+.=+=+|.-|.+-++|-.|. .|+... ++||+++- +.++
T Consensus 606 ~~lkVVFlenY~VslAe~lipaaDvseqis~ag~EASGTsnMK~amNGaLtlgtlDGanvEi~e~vG~eN~f~fG~~~~e 685 (798)
T PRK14985 606 DKLKVVFLPDYCVSAAELLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEQVGEENIFIFGHTVEQ 685 (798)
T ss_pred CceeEEEeCCCChHHHHHHhhhhhhhhhCCCCCccccCcchhHHHhcCceeeecccchHHHHHHHhCcCcEEEeCCCHHH
Confidence 1256677554 444499999999999887 4999999999999999999999988 565553 68999998 7776
Q ss_pred HHH
Q 016975 266 FVE 268 (379)
Q Consensus 266 l~~ 268 (379)
..+
T Consensus 686 v~~ 688 (798)
T PRK14985 686 VKA 688 (798)
T ss_pred HHH
Confidence 554
No 149
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=94.00 E-value=0.36 Score=43.86 Aligned_cols=96 Identities=17% Similarity=0.076 Sum_probs=63.1
Q ss_pred eEEEEEecccccC--HHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhc-CCe-eEEecCCCCHH--HHHhhcCE
Q 016975 143 GAYYIGKMVWSKG--YKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKL-KIV-VRVYPGRDHAD--LIFHDYKV 216 (379)
Q Consensus 143 ~il~vgrl~~~Kg--~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~-~l~-v~~~g~~~~~~--~~~~~~dv 216 (379)
+++..|.-.+.|. .+...++++.+.++ ++++++.|+.++.+..++..+.. +.+ +.+.|..+-.+ .+++.||+
T Consensus 124 i~i~~~~~~~~k~w~~~~~~~l~~~l~~~--~~~ivl~g~~~e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~~~l 201 (279)
T cd03789 124 VVLPPGASGPAKRWPAERFAALADRLLAR--GARVVLTGGPAERELAEEIAAALGGPRVVNLAGKTSLRELAALLARADL 201 (279)
T ss_pred EEECCCCCCccccCCHHHHHHHHHHHHHC--CCEEEEEechhhHHHHHHHHHhcCCCccccCcCCCCHHHHHHHHHhCCE
Confidence 4555554444444 45777777777655 78899999877766666665544 222 33446554444 99999999
Q ss_pred EEecCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 217 FLNPSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 217 ~v~ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
+|-+.. | ++--|.|.|+|+|+--.
T Consensus 202 ~I~~Ds----g-~~HlA~a~~~p~i~l~g 225 (279)
T cd03789 202 VVTNDS----G-PMHLAAALGTPTVALFG 225 (279)
T ss_pred EEeeCC----H-HHHHHHHcCCCEEEEEC
Confidence 997742 2 34455799999998655
No 150
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=93.92 E-value=0.27 Score=36.88 Aligned_cols=71 Identities=10% Similarity=0.070 Sum_probs=52.7
Q ss_pred EEEEcC-CcChHHHHHHHHhcCCeeEEe---cCCCCHH----HHHhhcCEEEecCCC---CcchhHHHHHHHcCCeEEec
Q 016975 175 VDLYGN-GEDFNQIQEAAEKLKIVVRVY---PGRDHAD----LIFHDYKVFLNPSTT---DVVCTTTAEALAMGKIVVCA 243 (379)
Q Consensus 175 l~i~G~-g~~~~~l~~~~~~~~l~v~~~---g~~~~~~----~~~~~~dv~v~ps~~---E~~~~~~~EAma~G~PVI~t 243 (379)
++|+|+ ......+++..++.|....++ ++..... ..+..+|+.|++..+ ...-.+--+|-..|+|++.+
T Consensus 2 vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 2 VLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred EEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEE
Confidence 567776 455788999999999988888 4443332 677777999988654 34445567888999999999
Q ss_pred CC
Q 016975 244 NH 245 (379)
Q Consensus 244 ~~ 245 (379)
+.
T Consensus 82 ~~ 83 (97)
T PF10087_consen 82 RS 83 (97)
T ss_pred CC
Confidence 96
No 151
>PLN02670 transferase, transferring glycosyl groups
Probab=93.87 E-value=1.7 Score=42.64 Aligned_cols=77 Identities=9% Similarity=0.022 Sum_probs=53.8
Q ss_pred eEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc-----ccccccCCCEEEeC--------CHH
Q 016975 198 VRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD--------DRN 264 (379)
Q Consensus 198 v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-----~e~i~~~~~g~~~~--------~~~ 264 (379)
+.+.+++++.+ +++...+-.+-++ +--++++||+++|+|+|+....+ ...+...+.|+.++ +.+
T Consensus 341 ~vv~~W~PQ~~-IL~H~~v~~FvtH--cGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~g~Gv~l~~~~~~~~~~~e 417 (472)
T PLN02670 341 MIHVGWVPQVK-ILSHESVGGFLTH--CGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLHGKKLGLEVPRDERDGSFTSD 417 (472)
T ss_pred eEEeCcCCHHH-HhcCcccceeeec--CCcchHHHHHHcCCCEEeCcchhccHHHHHHHHHcCeeEEeeccccCCcCcHH
Confidence 44558888777 7766666433332 23357999999999999988733 22444456776552 588
Q ss_pred HHHHHHHHHHhCC
Q 016975 265 GFVEATLKALAEE 277 (379)
Q Consensus 265 ~l~~~i~~~l~~~ 277 (379)
++.+++.+++.++
T Consensus 418 ~i~~av~~vm~~~ 430 (472)
T PLN02670 418 SVAESVRLAMVDD 430 (472)
T ss_pred HHHHHHHHHhcCc
Confidence 9999999999764
No 152
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=93.72 E-value=0.3 Score=43.64 Aligned_cols=89 Identities=17% Similarity=0.252 Sum_probs=60.6
Q ss_pred eEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcC-CcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecC
Q 016975 143 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGN-GEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPS 221 (379)
Q Consensus 143 ~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~-g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps 221 (379)
+++..|.-++ ||+ ..+.+..+.+..-++++++ |+ .|....+++.+++.+ +++++-..++-.++|..||..|..
T Consensus 161 ilI~lGGsDp-k~l--t~kvl~~L~~~~~nl~iV~-gs~~p~l~~l~k~~~~~~-~i~~~~~~~dma~LMke~d~aI~A- 234 (318)
T COG3980 161 ILITLGGSDP-KNL--TLKVLAELEQKNVNLHIVV-GSSNPTLKNLRKRAEKYP-NINLYIDTNDMAELMKEADLAISA- 234 (318)
T ss_pred EEEEccCCCh-hhh--HHHHHHHhhccCeeEEEEe-cCCCcchhHHHHHHhhCC-CeeeEecchhHHHHHHhcchheec-
Confidence 5666776543 443 3455555555433454433 44 445777887777766 777776666666999999999865
Q ss_pred CCCcchhHHHHHHHcCCeEE
Q 016975 222 TTDVVCTTTAEALAMGKIVV 241 (379)
Q Consensus 222 ~~E~~~~~~~EAma~G~PVI 241 (379)
-|.++.||+..|+|..
T Consensus 235 ----aGstlyEa~~lgvP~l 250 (318)
T COG3980 235 ----AGSTLYEALLLGVPSL 250 (318)
T ss_pred ----cchHHHHHHHhcCCce
Confidence 4889999999999933
No 153
>PLN02210 UDP-glucosyl transferase
Probab=93.39 E-value=1.2 Score=43.57 Aligned_cols=130 Identities=9% Similarity=-0.024 Sum_probs=72.6
Q ss_pred cceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCC---cChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEE
Q 016975 141 AKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNG---EDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVF 217 (379)
Q Consensus 141 ~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g---~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~ 217 (379)
..+.+..|.... -..+.+-+.+..+......+ ++.++.. .+...+++... +.+..+.+++++.+ +++.+.+.
T Consensus 270 svvyvsfGS~~~-~~~~~~~e~a~~l~~~~~~f-lw~~~~~~~~~~~~~~~~~~~--~~~g~v~~w~PQ~~-iL~h~~vg 344 (456)
T PLN02210 270 SVVYISFGSMLE-SLENQVETIAKALKNRGVPF-LWVIRPKEKAQNVQVLQEMVK--EGQGVVLEWSPQEK-ILSHMAIS 344 (456)
T ss_pred ceEEEEeccccc-CCHHHHHHHHHHHHhCCCCE-EEEEeCCccccchhhHHhhcc--CCCeEEEecCCHHH-HhcCcCcC
Confidence 345556666542 23334444444443332233 3334432 12223333221 12334568888876 77777633
Q ss_pred EecCCCCcchhHHHHHHHcCCeEEecCCCc-----cccccc-CCCEEEe-------C-CHHHHHHHHHHHHhCC
Q 016975 218 LNPSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQ-FPNCRTY-------D-DRNGFVEATLKALAEE 277 (379)
Q Consensus 218 v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-----~e~i~~-~~~g~~~-------~-~~~~l~~~i~~~l~~~ 277 (379)
.+-+. -|+ ++++||+++|+|+|+-.... ...+.+ -+.|+.+ . +.+++.+++.+++.++
T Consensus 345 ~FitH-~G~-nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~ 416 (456)
T PLN02210 345 CFVTH-CGW-NSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGP 416 (456)
T ss_pred eEEee-CCc-ccHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCc
Confidence 33332 222 47899999999999988833 223444 4667554 2 7789999999998753
No 154
>PLN03004 UDP-glycosyltransferase
Probab=93.32 E-value=1.3 Score=43.16 Aligned_cols=77 Identities=9% Similarity=-0.026 Sum_probs=55.0
Q ss_pred eeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc-----cccccc-CCCEEEeC-------CH
Q 016975 197 VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQ-FPNCRTYD-------DR 263 (379)
Q Consensus 197 ~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-----~e~i~~-~~~g~~~~-------~~ 263 (379)
++.+.+++++.+ +++.+++-.+-++ +--++++||+++|+|+|+..... ...+.+ .+.|+..+ +.
T Consensus 335 g~~v~~W~PQ~~-iL~H~~v~~FvTH--~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~ 411 (451)
T PLN03004 335 GMVVKSWAPQVP-VLNHKAVGGFVTH--CGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMNESETGFVSS 411 (451)
T ss_pred cEEEEeeCCHHH-HhCCCccceEecc--CcchHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEecCCcCCccCH
Confidence 566678888887 8888888444443 23357999999999999988732 223433 35675542 77
Q ss_pred HHHHHHHHHHHhC
Q 016975 264 NGFVEATLKALAE 276 (379)
Q Consensus 264 ~~l~~~i~~~l~~ 276 (379)
+++.+++.+++.+
T Consensus 412 e~l~~av~~vm~~ 424 (451)
T PLN03004 412 TEVEKRVQEIIGE 424 (451)
T ss_pred HHHHHHHHHHhcC
Confidence 8999999998864
No 155
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=93.21 E-value=2.2 Score=39.48 Aligned_cols=125 Identities=14% Similarity=0.032 Sum_probs=72.7
Q ss_pred cceEEEEEecccccCH--HHHHHHHHHhHhhcCCcEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHH--HHHhhcC
Q 016975 141 AKGAYYIGKMVWSKGY--KELLELLDDHQKELAGLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYK 215 (379)
Q Consensus 141 ~~~il~vgrl~~~Kg~--~~li~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~--~~~~~~d 215 (379)
+.++++.|.-.+.|.+ +...+.+..+.++ +..+++.|.+++ .+..++..+..+ +..+.|..+=.+ .+++.||
T Consensus 180 ~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~--~~~~vl~~g~~~e~~~~~~i~~~~~-~~~l~g~~sL~el~ali~~a~ 256 (319)
T TIGR02193 180 PYAVLLHATSRDDKTWPEERWRELARLLLAR--GLQIVLPWGNDAEKQRAERIAEALP-GAVVLPKMSLAEVAALLAGAD 256 (319)
T ss_pred CEEEEEeCCCcccCCCCHHHHHHHHHHHHHC--CCeEEEeCCCHHHHHHHHHHHhhCC-CCeecCCCCHHHHHHHHHcCC
Confidence 4456677744455655 4666666666543 577777754444 444555544433 335567665455 9999999
Q ss_pred EEEecCCCCcchhHHHHHHHcCCeEEecCCCc-cccccc-CCC-EE-----EeC-CHHHHHHHHHHH
Q 016975 216 VFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQ-FPN-CR-----TYD-DRNGFVEATLKA 273 (379)
Q Consensus 216 v~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-~e~i~~-~~~-g~-----~~~-~~~~l~~~i~~~ 273 (379)
++|-+. + ..+-=|.|+|+|+|+--.+. ...... +.+ .. +.+ ++++..+++.++
T Consensus 257 l~I~~D---S--gp~HlAaa~g~P~i~lfg~t~p~~~~P~~~~~~~~~~~~~~~I~~~~V~~ai~~~ 318 (319)
T TIGR02193 257 AVVGVD---T--GLTHLAAALDKPTVTLYGATDPGRTGGYGKPNVALLGESGANPTPDEVLAALEEL 318 (319)
T ss_pred EEEeCC---C--hHHHHHHHcCCCEEEEECCCCHhhcccCCCCceEEccCccCCCCHHHHHHHHHhh
Confidence 999764 2 24566788999999854322 111111 111 11 122 777877777665
No 156
>PLN03007 UDP-glucosyltransferase family protein
Probab=92.99 E-value=1.1 Score=44.24 Aligned_cols=79 Identities=13% Similarity=-0.029 Sum_probs=52.0
Q ss_pred CeeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCC-Cccc----cccc-CCCEEEe---------
Q 016975 196 IVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH-PSND----FFKQ-FPNCRTY--------- 260 (379)
Q Consensus 196 l~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~-g~~e----~i~~-~~~g~~~--------- 260 (379)
-++.+.+++++.+ ++..+++-.+-+. -| -++++||+++|+|+|+... +... .+.+ -..|+-+
T Consensus 345 ~g~~v~~w~PQ~~-iL~h~~v~~fvtH-~G-~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~ 421 (482)
T PLN03007 345 KGLIIRGWAPQVL-ILDHQATGGFVTH-CG-WNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVK 421 (482)
T ss_pred CCEEEecCCCHHH-HhccCccceeeec-Cc-chHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccc
Confidence 3667779988876 7777766333332 22 4589999999999999888 3321 1111 1223221
Q ss_pred -C--CHHHHHHHHHHHHhCC
Q 016975 261 -D--DRNGFVEATLKALAEE 277 (379)
Q Consensus 261 -~--~~~~l~~~i~~~l~~~ 277 (379)
+ +.+++.+++.+++.++
T Consensus 422 ~~~~~~~~l~~av~~~m~~~ 441 (482)
T PLN03007 422 GDFISREKVEKAVREVIVGE 441 (482)
T ss_pred cCcccHHHHHHHHHHHhcCc
Confidence 2 7889999999998764
No 157
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=92.91 E-value=0.43 Score=40.35 Aligned_cols=81 Identities=21% Similarity=0.186 Sum_probs=49.3
Q ss_pred CCCcEEEEcCCcchhhh-hcccccccccCcEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEEEcChhhhh
Q 016975 28 EVADIAVLEEPEHLTWF-HHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIRLSAATQE 106 (379)
Q Consensus 28 ~~~DvV~~~~p~~~~~~-~~~~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~ 106 (379)
.+.||+++.....-.+. ...+.......+++...|+. ++.+ .+++...+.+.+..+++ ...++|.+|+.|..+++
T Consensus 91 ~~~~ii~ilg~~~g~~~~~~~r~~~~~g~~v~vN~DGl--EWkR-~KW~~~~k~~lk~~E~~-avk~ad~lIaDs~~I~~ 166 (185)
T PF09314_consen 91 IKYDIILILGYGIGPFFLPFLRKLRKKGGKVVVNMDGL--EWKR-AKWGRPAKKYLKFSEKL-AVKYADRLIADSKGIQD 166 (185)
T ss_pred ccCCEEEEEcCCccHHHHHHHHhhhhcCCcEEECCCcc--hhhh-hhcCHHHHHHHHHHHHH-HHHhCCEEEEcCHHHHH
Confidence 36889998654311111 10111222223777777774 4544 56776777777766666 44458999999999998
Q ss_pred hhhccc
Q 016975 107 YANSII 112 (379)
Q Consensus 107 ~~~~~i 112 (379)
+.++..
T Consensus 167 y~~~~y 172 (185)
T PF09314_consen 167 YIKERY 172 (185)
T ss_pred HHHHHc
Confidence 876543
No 158
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=92.75 E-value=6.8 Score=35.80 Aligned_cols=218 Identities=15% Similarity=0.085 Sum_probs=111.5
Q ss_pred ccccccCCCCCCcEEEE-cCCcchhhhhccccccccc-CcEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcce
Q 016975 19 GDISEVIPDEVADIAVL-EEPEHLTWFHHGKRWKTKF-RYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHK 96 (379)
Q Consensus 19 ~~l~~~l~~~~~DvV~~-~~p~~~~~~~~~~~~~~~~-~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 96 (379)
..+.+++.+++||+.+- ++|..- +..... +|.|....+...... .+.... +|+.
T Consensus 74 ~~L~ki~~~~kpdv~i~~~s~~l~-------rvafgLg~psIi~~D~ehA~~q------------nkl~~P-----la~~ 129 (346)
T COG1817 74 YKLSKIIAEFKPDVAIGKHSPELP-------RVAFGLGIPSIIFVDNEHAEAQ------------NKLTLP-----LADV 129 (346)
T ss_pred HHHHHHHhhcCCceEeecCCcchh-------hHHhhcCCceEEecCChhHHHH------------hhcchh-----hhhh
Confidence 35788888999999886 333221 111111 377777766432222 112222 2577
Q ss_pred EEEcChhhhhh----hhc--cceeecccCC----CCccCccccHHHhhcCCCCCcceEEE--EE----ecccccCHHHHH
Q 016975 97 VIRLSAATQEY----ANS--IICNVHGVNP----KFLEIGKKKKEQQQNGTHAFAKGAYY--IG----KMVWSKGYKELL 160 (379)
Q Consensus 97 vi~~S~~~~~~----~~~--~i~~i~gvd~----~~~~~~~~~~~~~~~~~~~~~~~il~--vg----rl~~~Kg~~~li 160 (379)
+++++..-... -.+ ++...||+-. ..|.|++ ...++.+...+.+.|++ .. -....++.+.+.
T Consensus 130 ii~P~~~~~~~~~~~G~~p~~i~~~~giae~~~v~~f~pd~--evlkeLgl~~~~~yIVmRpe~~~A~y~~g~~~~~~~~ 207 (346)
T COG1817 130 IITPEAIDEEELLDFGADPNKISGYNGIAELANVYGFVPDP--EVLKELGLEEGETYIVMRPEPWGAHYDNGDRGISVLP 207 (346)
T ss_pred eecccccchHHHHHhCCCccceecccceeEEeecccCCCCH--HHHHHcCCCCCCceEEEeeccccceeeccccchhhHH
Confidence 77776443321 112 2333344431 1133332 22334444443333332 11 234566776777
Q ss_pred HHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHH-HHHhhcCEEEecCCCCcchhHHHHHHHcCCe
Q 016975 161 ELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD-LIFHDYKVFLNPSTTDVVCTTTAEALAMGKI 239 (379)
Q Consensus 161 ~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~-~~~~~~dv~v~ps~~E~~~~~~~EAma~G~P 239 (379)
++++.+++.. .++|--.++..+ ..++. ++.+...-..+. +++-.|++++- +-|.---||+..|+|
T Consensus 208 ~li~~l~k~g---iV~ipr~~~~~e----ife~~--~n~i~pk~~vD~l~Llyya~lvig-----~ggTMarEaAlLGtp 273 (346)
T COG1817 208 DLIKELKKYG---IVLIPREKEQAE----IFEGY--RNIIIPKKAVDTLSLLYYATLVIG-----AGGTMAREAALLGTP 273 (346)
T ss_pred HHHHHHHhCc---EEEecCchhHHH----HHhhh--ccccCCcccccHHHHHhhhheeec-----CCchHHHHHHHhCCc
Confidence 7777765432 233322222222 22221 222222222222 57777777773 346677899999999
Q ss_pred EEecCCCc----ccccccCCCEEEeC--CHHHHHHHHHHHHhCCC
Q 016975 240 VVCANHPS----NDFFKQFPNCRTYD--DRNGFVEATLKALAEEP 278 (379)
Q Consensus 240 VI~t~~g~----~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~ 278 (379)
.|++..|- .+... +.|+++. |+.+..+...+.+.++.
T Consensus 274 aIs~~pGkll~vdk~li--e~G~~~~s~~~~~~~~~a~~~l~~~~ 316 (346)
T COG1817 274 AISCYPGKLLAVDKYLI--EKGLLYHSTDEIAIVEYAVRNLKYRR 316 (346)
T ss_pred eEEecCCccccccHHHH--hcCceeecCCHHHHHHHHHHHhhchh
Confidence 99999652 22222 3467766 78777777777776653
No 159
>PLN02555 limonoid glucosyltransferase
Probab=92.48 E-value=1.6 Score=43.05 Aligned_cols=77 Identities=18% Similarity=0.176 Sum_probs=52.7
Q ss_pred CeeEEecCCCCHHHHH--hhcCEEEecCCCCcchhHHHHHHHcCCeEEecCC-Cc----ccccccC-CCEEEe-------
Q 016975 196 IVVRVYPGRDHADLIF--HDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH-PS----NDFFKQF-PNCRTY------- 260 (379)
Q Consensus 196 l~v~~~g~~~~~~~~~--~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~-g~----~e~i~~~-~~g~~~------- 260 (379)
.++.+.+++++.+ ++ .+...||.- +--++++||+.+|+|+|+... +. ...+.+. +.|+-.
T Consensus 337 ~~g~v~~W~PQ~~-iL~H~~v~~FvtH----~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~~ 411 (480)
T PLN02555 337 DKGKIVQWCPQEK-VLAHPSVACFVTH----CGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGEAEN 411 (480)
T ss_pred CceEEEecCCHHH-HhCCCccCeEEec----CCcchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEccCCcccc
Confidence 3666778888766 66 334566632 224589999999999999988 33 2233443 667555
Q ss_pred -C-CHHHHHHHHHHHHhCC
Q 016975 261 -D-DRNGFVEATLKALAEE 277 (379)
Q Consensus 261 -~-~~~~l~~~i~~~l~~~ 277 (379)
. +.+++..++.+++.++
T Consensus 412 ~~v~~~~v~~~v~~vm~~~ 430 (480)
T PLN02555 412 KLITREEVAECLLEATVGE 430 (480)
T ss_pred CcCcHHHHHHHHHHHhcCc
Confidence 1 6789999999998753
No 160
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=92.33 E-value=0.79 Score=42.91 Aligned_cols=98 Identities=14% Similarity=0.101 Sum_probs=68.8
Q ss_pred cceEEEEE-ecccccCHH--HHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHH--HHHhhcC
Q 016975 141 AKGAYYIG-KMVWSKGYK--ELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYK 215 (379)
Q Consensus 141 ~~~il~vg-rl~~~Kg~~--~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~--~~~~~~d 215 (379)
+.+++..| .-...|++. ...+.++.+.+++ .++++.|+..+.+..++..+..+..+.+.|..+=.+ .++..||
T Consensus 176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~--~~Vvl~g~~~e~e~~~~i~~~~~~~~~l~~k~sL~e~~~li~~a~ 253 (334)
T COG0859 176 PYIVINPGASRGSAKRWPLEHYAELAELLIAKG--YQVVLFGGPDEEERAEEIAKGLPNAVILAGKTSLEELAALIAGAD 253 (334)
T ss_pred CeEEEeccccccccCCCCHHHHHHHHHHHHHCC--CEEEEecChHHHHHHHHHHHhcCCccccCCCCCHHHHHHHHhcCC
Confidence 34566666 444566654 6667777776664 889999988666667777766654444667766666 8999999
Q ss_pred EEEecCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 216 VFLNPSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 216 v~v~ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
++|-+.. -.+-=|.|.|+|+|+---
T Consensus 254 l~I~~DS-----g~~HlAaA~~~P~I~iyg 278 (334)
T COG0859 254 LVIGNDS-----GPMHLAAALGTPTIALYG 278 (334)
T ss_pred EEEccCC-----hHHHHHHHcCCCEEEEEC
Confidence 9997742 245668899999998654
No 161
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=91.72 E-value=1.2 Score=41.68 Aligned_cols=96 Identities=17% Similarity=0.108 Sum_probs=61.5
Q ss_pred ceEEEEEe-cccccCHH--HHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCe-eEEecCCCCHH--HHHhhcC
Q 016975 142 KGAYYIGK-MVWSKGYK--ELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIV-VRVYPGRDHAD--LIFHDYK 215 (379)
Q Consensus 142 ~~il~vgr-l~~~Kg~~--~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~-v~~~g~~~~~~--~~~~~~d 215 (379)
.+++..|. ..+.|.+. ...+.+..+.+. +.++++.|+..+.+..++..+..+.. +.+.|..+=.+ .+++.||
T Consensus 176 ~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~--~~~ivl~G~~~e~~~~~~i~~~~~~~~~~l~g~~sL~el~ali~~a~ 253 (334)
T TIGR02195 176 IIAFCPGAEFGPAKRWPHEHYAELAKRLIDQ--GYQVVLFGSAKDHPAGNEIEALLPGELRNLAGETSLDEAVDLIALAK 253 (334)
T ss_pred EEEEcCCCCCCccCCCCHHHHHHHHHHHHHC--CCEEEEEEChhhHHHHHHHHHhCCcccccCCCCCCHHHHHHHHHhCC
Confidence 34455554 33555544 566666666543 57889999877766666555444322 23456555445 9999999
Q ss_pred EEEecCCCCcchhHHHHHHHcCCeEEecC
Q 016975 216 VFLNPSTTDVVCTTTAEALAMGKIVVCAN 244 (379)
Q Consensus 216 v~v~ps~~E~~~~~~~EAma~G~PVI~t~ 244 (379)
++|-.. + ..+-=|.|.|+|+|+--
T Consensus 254 l~I~~D---S--Gp~HlAaA~~~P~i~lf 277 (334)
T TIGR02195 254 AVVTND---S--GLMHVAAALNRPLVALY 277 (334)
T ss_pred EEEeeC---C--HHHHHHHHcCCCEEEEE
Confidence 999764 2 24566889999999843
No 162
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=91.66 E-value=1.8 Score=42.35 Aligned_cols=130 Identities=15% Similarity=0.103 Sum_probs=73.7
Q ss_pred cceEEEEEecc--cccCHHHHHHHHHHhHhhcCCcEEEEEcCC---------cChHH---HHHHHHhcCCeeEEecCCCC
Q 016975 141 AKGAYYIGKMV--WSKGYKELLELLDDHQKELAGLEVDLYGNG---------EDFNQ---IQEAAEKLKIVVRVYPGRDH 206 (379)
Q Consensus 141 ~~~il~vgrl~--~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g---------~~~~~---l~~~~~~~~l~v~~~g~~~~ 206 (379)
..+.+..|.+. ..+-+.++..+++... ..+ ++++.+. .+... .+...++.+.+..+.+++++
T Consensus 262 sVvyvsfGS~~~l~~~q~~ela~gL~~s~---~~f-lWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~g~v~~W~PQ 337 (455)
T PLN02152 262 SVIYVSFGTMVELSKKQIEELARALIEGK---RPF-LWVITDKLNREAKIEGEEETEIEKIAGFRHELEEVGMIVSWCSQ 337 (455)
T ss_pred ceEEEEecccccCCHHHHHHHHHHHHHcC---CCe-EEEEecCcccccccccccccccccchhHHHhccCCeEEEeeCCH
Confidence 33455556553 3455566666666542 233 4444431 11001 12222233335566788876
Q ss_pred HHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCC-Cc----ccccccC-CCEEEe------C-CHHHHHHHHHHH
Q 016975 207 ADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH-PS----NDFFKQF-PNCRTY------D-DRNGFVEATLKA 273 (379)
Q Consensus 207 ~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~-g~----~e~i~~~-~~g~~~------~-~~~~l~~~i~~~ 273 (379)
.+ ++....+-.+-+.. -.++++||+.+|+|+|+-.. +. ...+.+. +.|+-. . +.+++.+++.++
T Consensus 338 ~~-iL~h~~vg~fvtH~--G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~v 414 (455)
T PLN02152 338 IE-VLRHRAVGCFVTHC--GWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAV 414 (455)
T ss_pred HH-HhCCcccceEEeeC--CcccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHH
Confidence 66 77777764444432 33579999999999999887 33 1133331 234332 1 678999999999
Q ss_pred HhCC
Q 016975 274 LAEE 277 (379)
Q Consensus 274 l~~~ 277 (379)
+.++
T Consensus 415 m~~~ 418 (455)
T PLN02152 415 MEEK 418 (455)
T ss_pred Hhhh
Confidence 8753
No 163
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=91.65 E-value=0.92 Score=40.24 Aligned_cols=98 Identities=16% Similarity=0.112 Sum_probs=56.3
Q ss_pred cceEEEEEecccccCHHH--HHHHHHHhHhhcCCcEEEEEcCCcC--hHHHHHHHHhcCC-eeEEecCCCCHH--HHHhh
Q 016975 141 AKGAYYIGKMVWSKGYKE--LLELLDDHQKELAGLEVDLYGNGED--FNQIQEAAEKLKI-VVRVYPGRDHAD--LIFHD 213 (379)
Q Consensus 141 ~~~il~vgrl~~~Kg~~~--li~a~~~l~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~l-~v~~~g~~~~~~--~~~~~ 213 (379)
+.++++.|.-.+.|.+.. ..+.+..+.+.+ +.+++.|...+ .+......+.... .+.+.|..+=.+ .+++.
T Consensus 106 ~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~--~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ali~~ 183 (247)
T PF01075_consen 106 PYIGINPGASWPSKRWPAEKWAELIERLKERG--YRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAALISR 183 (247)
T ss_dssp SEEEEE---SSGGGS--HHHHHHHHHHHCCCT---EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHHHHT
T ss_pred CeEEEeecCCCccccCCHHHHHHHHHHHHhhC--ceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHHHhc
Confidence 456677776556776654 666676665543 77888887777 3333444443322 355667665444 99999
Q ss_pred cCEEEecCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 214 YKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 214 ~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
||++|-+- + -.+-=|.|.|+|+|+--.
T Consensus 184 a~~~I~~D---t--g~~HlA~a~~~p~v~lfg 210 (247)
T PF01075_consen 184 ADLVIGND---T--GPMHLAAALGTPTVALFG 210 (247)
T ss_dssp SSEEEEES---S--HHHHHHHHTT--EEEEES
T ss_pred CCEEEecC---C--hHHHHHHHHhCCEEEEec
Confidence 99999774 2 246668899999998643
No 164
>PLN02173 UDP-glucosyl transferase family protein
Probab=90.86 E-value=3 Score=40.78 Aligned_cols=79 Identities=10% Similarity=0.058 Sum_probs=55.0
Q ss_pred CeeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCC-Cc----ccccccC-CCEEEeC--------
Q 016975 196 IVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH-PS----NDFFKQF-PNCRTYD-------- 261 (379)
Q Consensus 196 l~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~-g~----~e~i~~~-~~g~~~~-------- 261 (379)
.++.+.+++++.+ ++....+..+-++ +-.++++||+++|+|+|+-.. +. ...+.+. +.|+-+.
T Consensus 317 ~~~~i~~W~PQ~~-iL~H~~v~~FvtH--cGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~ 393 (449)
T PLN02173 317 DKSLVLKWSPQLQ-VLSNKAIGCFMTH--CGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESGIA 393 (449)
T ss_pred CceEEeCCCCHHH-HhCCCccceEEec--CccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEeecccCCcc
Confidence 3677778888666 7777765444443 234679999999999999987 33 2244432 4554432
Q ss_pred CHHHHHHHHHHHHhCC
Q 016975 262 DRNGFVEATLKALAEE 277 (379)
Q Consensus 262 ~~~~l~~~i~~~l~~~ 277 (379)
+.+++.+++.+++.++
T Consensus 394 ~~e~v~~av~~vm~~~ 409 (449)
T PLN02173 394 KREEIEFSIKEVMEGE 409 (449)
T ss_pred cHHHHHHHHHHHhcCC
Confidence 5799999999999763
No 165
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=90.76 E-value=5.5 Score=39.29 Aligned_cols=74 Identities=9% Similarity=0.107 Sum_probs=49.6
Q ss_pred eeEEecCCCCHHHHHhh--cCEEEecCCCCcchhHHHHHHHcCCeEEecCC-Cc----ccccc-cCCCEEEe-----C--
Q 016975 197 VVRVYPGRDHADLIFHD--YKVFLNPSTTDVVCTTTAEALAMGKIVVCANH-PS----NDFFK-QFPNCRTY-----D-- 261 (379)
Q Consensus 197 ~v~~~g~~~~~~~~~~~--~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~-g~----~e~i~-~~~~g~~~-----~-- 261 (379)
.+.+.+++++.+ ++.. .++||.- -| -++++||+++|+|+|+-.. +. ...+. .-+.|+-. .
T Consensus 344 g~~v~~w~PQ~~-vL~h~~v~~fvtH---~G-~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~~~~~ 418 (477)
T PLN02863 344 GLVIRGWAPQVA-ILSHRAVGAFLTH---CG-WNSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCEGADTVP 418 (477)
T ss_pred CEEecCCCCHHH-HhcCCCcCeEEec---CC-chHHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEeccCCCCCc
Confidence 456668998766 6665 4566632 22 3479999999999999887 33 12233 33566544 1
Q ss_pred CHHHHHHHHHHHHh
Q 016975 262 DRNGFVEATLKALA 275 (379)
Q Consensus 262 ~~~~l~~~i~~~l~ 275 (379)
+.+++.+++.+++.
T Consensus 419 ~~~~v~~~v~~~m~ 432 (477)
T PLN02863 419 DSDELARVFMESVS 432 (477)
T ss_pred CHHHHHHHHHHHhh
Confidence 67888888888774
No 166
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=90.70 E-value=3.6 Score=42.52 Aligned_cols=138 Identities=13% Similarity=0.091 Sum_probs=95.6
Q ss_pred CcceEEEEEecccccCHHHHHHHHHHhHhhcCC----cEEEEEcC-----CcChHHHHHH----HHh----cC----Cee
Q 016975 140 FAKGAYYIGKMVWSKGYKELLELLDDHQKELAG----LEVDLYGN-----GEDFNQIQEA----AEK----LK----IVV 198 (379)
Q Consensus 140 ~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~----~~l~i~G~-----g~~~~~l~~~----~~~----~~----l~v 198 (379)
++.+++-+-+++.-||...=+.+++++..++|. +.++.+.. +.+-++++.. .++ .+ ..+
T Consensus 275 g~klilgvD~~d~~kg~~~Kl~a~e~~L~~~pe~~~kVvliqi~~~~~~~~~~v~~~k~~v~~~v~rIn~~f~~~~~~pV 354 (732)
T KOG1050|consen 275 GKKLILGVDRLDSIKGIQLKLLAFEQFLEEYPEWIDKVVLIQIENPKRTDGKEVEELKFCVSVHVRRINEKFGSASYQPV 354 (732)
T ss_pred CCceEecccccccccCchHHHHHHHHHHHhChhhhceEEEEEEecCCcccchHHHHHHHHhHhhhhhhhhccCCcccceE
Confidence 466777778999999999888899988877764 44444432 2211222221 111 11 122
Q ss_pred EEe-cCCCCHH--HHHhhcCEEEecCCCCcchhHHHHHHHcC----CeEEecCC-CcccccccCCCEEEeC--CHHHHHH
Q 016975 199 RVY-PGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMG----KIVVCANH-PSNDFFKQFPNCRTYD--DRNGFVE 268 (379)
Q Consensus 199 ~~~-g~~~~~~--~~~~~~dv~v~ps~~E~~~~~~~EAma~G----~PVI~t~~-g~~e~i~~~~~g~~~~--~~~~l~~ 268 (379)
.++ -.++..+ .++..+|+++..+..+|..++.+|+.+|. .+-|.+.. |+.+..+++- .+++ |.++++.
T Consensus 355 ~~~~~~~~~~~l~a~~~Vaev~~v~s~rdGmnl~~~e~i~~~~~~~~~lVlsef~G~~~tl~d~a--ivvnpw~~~~~~~ 432 (732)
T KOG1050|consen 355 HSLLKDLPFLELLALYKVAEVCPVTSWRDGMNLVFLEYILCQENKKSVLVLSEFIGDDTTLEDAA--IVVNPWDGDEFAI 432 (732)
T ss_pred EEeeccCCHHHHhhhHHhhhheeecccccccchhhhHHHHhhcccCCceEEeeeccccccccccC--EEECCcchHHHHH
Confidence 333 4555555 89999999999999999999999999885 45666666 7777766642 4444 8999999
Q ss_pred HHHHHHhCCCC
Q 016975 269 ATLKALAEEPA 279 (379)
Q Consensus 269 ~i~~~l~~~~~ 279 (379)
+|..+++....
T Consensus 433 ~i~~al~~s~~ 443 (732)
T KOG1050|consen 433 LISKALTMSDE 443 (732)
T ss_pred HHHHHhhcCHH
Confidence 99999987655
No 167
>PLN02764 glycosyltransferase family protein
Probab=90.58 E-value=8.7 Score=37.57 Aligned_cols=77 Identities=10% Similarity=-0.048 Sum_probs=51.8
Q ss_pred eEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc-----ccccc-cCCCEEEe------C-CHH
Q 016975 198 VRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFK-QFPNCRTY------D-DRN 264 (379)
Q Consensus 198 v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-----~e~i~-~~~~g~~~------~-~~~ 264 (379)
+.+.+++++.+ +++...+..+-++ +--++++||+++|+|+|+-.... ...+. ....|+-. . +.+
T Consensus 319 ~v~~~W~PQ~~-vL~h~~v~~FvtH--~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~~e 395 (453)
T PLN02764 319 VVWGGWVQQPL-ILSHPSVGCFVSH--CGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREETGWFSKE 395 (453)
T ss_pred cEEeCCCCHHH-HhcCcccCeEEec--CCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEeccccCCccCHH
Confidence 34457888887 6666544333222 23457999999999999998843 22343 33556543 2 789
Q ss_pred HHHHHHHHHHhCC
Q 016975 265 GFVEATLKALAEE 277 (379)
Q Consensus 265 ~l~~~i~~~l~~~ 277 (379)
++.+++.++++++
T Consensus 396 ~i~~av~~vm~~~ 408 (453)
T PLN02764 396 SLRDAINSVMKRD 408 (453)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999999764
No 168
>PLN02554 UDP-glycosyltransferase family protein
Probab=89.68 E-value=4.8 Score=39.76 Aligned_cols=74 Identities=8% Similarity=0.028 Sum_probs=49.5
Q ss_pred eeEEecCCCCHHHHHhh--cCEEEecCCCCcchhHHHHHHHcCCeEEecCC-Cc---cc--ccccCCCEEEe--------
Q 016975 197 VVRVYPGRDHADLIFHD--YKVFLNPSTTDVVCTTTAEALAMGKIVVCANH-PS---ND--FFKQFPNCRTY-------- 260 (379)
Q Consensus 197 ~v~~~g~~~~~~~~~~~--~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~-g~---~e--~i~~~~~g~~~-------- 260 (379)
++.+.+++++.+ +++. ++.|| ++ -| -++++||+.+|+|+|+... +. +. .+...+.|+.+
T Consensus 343 ~g~v~~W~PQ~~-iL~H~~v~~Fv--tH-~G-~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~ 417 (481)
T PLN02554 343 IGKVIGWAPQVA-VLAKPAIGGFV--TH-CG-WNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDL 417 (481)
T ss_pred CceEEeeCCHHH-HhCCcccCccc--cc-Cc-cchHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeeccccccc
Confidence 556668888766 6743 34455 22 22 3579999999999999887 32 22 23444556443
Q ss_pred ------C-CHHHHHHHHHHHHh
Q 016975 261 ------D-DRNGFVEATLKALA 275 (379)
Q Consensus 261 ------~-~~~~l~~~i~~~l~ 275 (379)
. +.+++.++|.+++.
T Consensus 418 ~~~~~~~~~~e~l~~av~~vm~ 439 (481)
T PLN02554 418 LAGEMETVTAEEIERGIRCLME 439 (481)
T ss_pred cccccCeEcHHHHHHHHHHHhc
Confidence 2 78899999999886
No 169
>PLN02167 UDP-glycosyltransferase family protein
Probab=89.32 E-value=5.9 Score=39.11 Aligned_cols=75 Identities=12% Similarity=0.015 Sum_probs=50.3
Q ss_pred eeEEecCCCCHHHHHhhc--CEEEecCCCCcchhHHHHHHHcCCeEEecCC-Cc---cc--ccccCCCEEEe--------
Q 016975 197 VVRVYPGRDHADLIFHDY--KVFLNPSTTDVVCTTTAEALAMGKIVVCANH-PS---ND--FFKQFPNCRTY-------- 260 (379)
Q Consensus 197 ~v~~~g~~~~~~~~~~~~--dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~-g~---~e--~i~~~~~g~~~-------- 260 (379)
+..+.+++++.+ ++... +.||.- -|+ ++++||+++|+|+|+-.. +. +. .+...+.|+.+
T Consensus 341 rg~v~~w~PQ~~-iL~h~~vg~fvtH---~G~-nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~ 415 (475)
T PLN02167 341 RGLVCGWAPQVE-ILAHKAIGGFVSH---CGW-NSVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVSAY 415 (475)
T ss_pred CeeeeccCCHHH-HhcCcccCeEEee---CCc-ccHHHHHHcCCCEEeccccccchhhHHHHHHHhCeeEEeeccccccc
Confidence 345668887776 66664 456532 233 478999999999999887 33 21 23444566543
Q ss_pred --C-CHHHHHHHHHHHHhC
Q 016975 261 --D-DRNGFVEATLKALAE 276 (379)
Q Consensus 261 --~-~~~~l~~~i~~~l~~ 276 (379)
. +.+++.+++.+++.+
T Consensus 416 ~~~~~~~~l~~av~~~m~~ 434 (475)
T PLN02167 416 GEIVKADEIAGAVRSLMDG 434 (475)
T ss_pred CCcccHHHHHHHHHHHhcC
Confidence 1 678999999999875
No 170
>PLN02207 UDP-glycosyltransferase
Probab=89.29 E-value=4.9 Score=39.50 Aligned_cols=77 Identities=12% Similarity=-0.052 Sum_probs=50.6
Q ss_pred CeeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCC-Cc----cccccc-CCCEEEe---------
Q 016975 196 IVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH-PS----NDFFKQ-FPNCRTY--------- 260 (379)
Q Consensus 196 l~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~-g~----~e~i~~-~~~g~~~--------- 260 (379)
.+..+.++.++.+ +++...+-.+-++ -| -++++||+++|+|+|+-.. +. ...+.+ .+.|+-+
T Consensus 332 ~~g~i~~W~PQ~~-IL~H~~vg~FvTH-~G-wnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~ 408 (468)
T PLN02207 332 GRGMICGWSPQVE-ILAHKAVGGFVSH-CG-WNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYRVHSD 408 (468)
T ss_pred CCeEEEEeCCHHH-Hhcccccceeeec-Cc-cccHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEEecccccccC
Confidence 3556668888887 6666555333332 22 2468999999999999888 33 122333 4556522
Q ss_pred C--CHHHHHHHHHHHHh
Q 016975 261 D--DRNGFVEATLKALA 275 (379)
Q Consensus 261 ~--~~~~l~~~i~~~l~ 275 (379)
+ +.+++.++|.+++.
T Consensus 409 ~~v~~e~i~~av~~vm~ 425 (468)
T PLN02207 409 EIVNANEIETAIRCVMN 425 (468)
T ss_pred CcccHHHHHHHHHHHHh
Confidence 1 77899999999986
No 171
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=89.03 E-value=0.87 Score=38.01 Aligned_cols=90 Identities=17% Similarity=0.117 Sum_probs=50.1
Q ss_pred CCCCcEEEEcCCcchhhhhcccccccccC--cEEEEecc----------ChHHHHHHhhcchHHHHHHHHHHHHHHHHhc
Q 016975 27 DEVADIAVLEEPEHLTWFHHGKRWKTKFR--YVVGIVHT----------NYLEYVKREKNGRLQAFLLKYANSWLVDIYC 94 (379)
Q Consensus 27 ~~~~DvV~~~~p~~~~~~~~~~~~~~~~~--~vv~~~h~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (379)
.+.||||+.|.-..-+++ .+.-|. |++..+.- .++++.. ........-.+.+..+.....|
T Consensus 64 Gf~PDvI~~H~GWGe~Lf-----lkdv~P~a~li~Y~E~~y~~~g~d~~FDpe~p~--~~~~~~~~r~rN~~~l~~l~~~ 136 (171)
T PF12000_consen 64 GFVPDVIIAHPGWGETLF-----LKDVFPDAPLIGYFEFYYRASGADVGFDPEFPP--SLDDRARLRMRNAHNLLALEQA 136 (171)
T ss_pred CCCCCEEEEcCCcchhhh-----HHHhCCCCcEEEEEEEEecCCCCcCCCCCCCCC--CHHHHHHHHHHhHHHHHHHHhC
Confidence 478999999876555444 444443 66554422 1122210 0011111222334444444458
Q ss_pred ceEEEcChhhhh----hhhccceeec-ccCCCCc
Q 016975 95 HKVIRLSAATQE----YANSIICNVH-GVNPKFL 123 (379)
Q Consensus 95 d~vi~~S~~~~~----~~~~~i~~i~-gvd~~~~ 123 (379)
|..+++|..-+. ..++++.+++ |||++.+
T Consensus 137 D~~isPT~wQ~~~fP~~~r~kI~VihdGiDt~~~ 170 (171)
T PF12000_consen 137 DAGISPTRWQRSQFPAEFRSKISVIHDGIDTDRF 170 (171)
T ss_pred CcCcCCCHHHHHhCCHHHHcCcEEeecccchhhc
Confidence 999999977442 3457888885 9998765
No 172
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=88.90 E-value=3.2 Score=38.53 Aligned_cols=93 Identities=16% Similarity=0.158 Sum_probs=56.8
Q ss_pred EEEEecccccCHH--HHHHHHHHhHhhcCCcEEEEE-cCCcChHHHHHHHHhcCCeeEEecCCCCHH--HHHhhcCEEEe
Q 016975 145 YYIGKMVWSKGYK--ELLELLDDHQKELAGLEVDLY-GNGEDFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLN 219 (379)
Q Consensus 145 l~vgrl~~~Kg~~--~li~a~~~l~~~~~~~~l~i~-G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~--~~~~~~dv~v~ 219 (379)
+..|.-.+.|.+. ...+.+..+.++ +.++++. |...+.+..++..+.. ..+.+.|..+=.+ .+++.||++|-
T Consensus 183 ~~~~~s~~~k~Wp~e~~a~li~~l~~~--~~~ivl~~G~~~e~~~~~~i~~~~-~~~~l~g~~sL~elaali~~a~l~I~ 259 (322)
T PRK10964 183 FLHATTRDDKHWPEAHWRELIGLLAPS--GLRIKLPWGAEHEEQRAKRLAEGF-PYVEVLPKLSLEQVARVLAGAKAVVS 259 (322)
T ss_pred EEeCCCcccccCCHHHHHHHHHHHHHC--CCeEEEeCCCHHHHHHHHHHHccC-CcceecCCCCHHHHHHHHHhCCEEEe
Confidence 3444323344443 566666666443 5677775 6444544445444432 2455667665555 99999999997
Q ss_pred cCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 220 PSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 220 ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
... .++-=|.|+|+|+|+---
T Consensus 260 nDS-----Gp~HlA~A~g~p~valfG 280 (322)
T PRK10964 260 VDT-----GLSHLTAALDRPNITLYG 280 (322)
T ss_pred cCC-----cHHHHHHHhCCCEEEEEC
Confidence 642 246678999999998544
No 173
>PLN02208 glycosyltransferase family protein
Probab=88.77 E-value=5.8 Score=38.71 Aligned_cols=79 Identities=10% Similarity=-0.021 Sum_probs=54.5
Q ss_pred eeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCC-Cc----cccccc-CCCEEEeC-------CH
Q 016975 197 VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH-PS----NDFFKQ-FPNCRTYD-------DR 263 (379)
Q Consensus 197 ~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~-g~----~e~i~~-~~~g~~~~-------~~ 263 (379)
++.+.++.++.+ +++...+-.+-++. --++++||+++|+|+|+-.. +. ...+.+ .+.|+.++ +.
T Consensus 312 g~~v~~W~PQ~~-iL~H~~v~~FvtHc--G~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~ 388 (442)
T PLN02208 312 GVVWGGWVQQPL-ILDHPSIGCFVNHC--GPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREKTGWFSK 388 (442)
T ss_pred CcEeeccCCHHH-HhcCCccCeEEccC--CchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEeccccCCcCcH
Confidence 555668888887 77777665544432 23579999999999999888 33 122333 45665552 67
Q ss_pred HHHHHHHHHHHhCCC
Q 016975 264 NGFVEATLKALAEEP 278 (379)
Q Consensus 264 ~~l~~~i~~~l~~~~ 278 (379)
+++.++|.++++++.
T Consensus 389 ~~l~~ai~~~m~~~~ 403 (442)
T PLN02208 389 ESLSNAIKSVMDKDS 403 (442)
T ss_pred HHHHHHHHHHhcCCc
Confidence 899999999997653
No 174
>PLN00414 glycosyltransferase family protein
Probab=88.39 E-value=11 Score=36.86 Aligned_cols=128 Identities=7% Similarity=-0.044 Sum_probs=72.6
Q ss_pred cceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcC----Cc----ChHHHHHHHHhcCCeeEEecCCCCHHHHHh
Q 016975 141 AKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGN----GE----DFNQIQEAAEKLKIVVRVYPGRDHADLIFH 212 (379)
Q Consensus 141 ~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~----g~----~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~ 212 (379)
..+.+..|+.. .-..+.+.+....|.....++ ++++-. +. ..+.++...++.| ..+.+++++.+ +++
T Consensus 253 sVvyvsfGS~~-~~~~~q~~e~a~gL~~s~~~F-lwvvr~~~~~~~~~~~lp~~f~~r~~~~g--~vv~~w~PQ~~-vL~ 327 (446)
T PLN00414 253 SVVFCAFGTQF-FFEKDQFQEFCLGMELTGLPF-LIAVMPPKGSSTVQEALPEGFEERVKGRG--IVWEGWVEQPL-ILS 327 (446)
T ss_pred ceEEEeecccc-cCCHHHHHHHHHHHHHcCCCe-EEEEecCCCcccchhhCChhHHHHhcCCC--eEEeccCCHHH-Hhc
Confidence 33444555653 222344555554444444444 233322 11 1123433333322 23447888777 776
Q ss_pred hc--CEEEecCCCCcchhHHHHHHHcCCeEEecCCCc-----ccccc-cCCCEEEe-------CCHHHHHHHHHHHHhCC
Q 016975 213 DY--KVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFK-QFPNCRTY-------DDRNGFVEATLKALAEE 277 (379)
Q Consensus 213 ~~--dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-----~e~i~-~~~~g~~~-------~~~~~l~~~i~~~l~~~ 277 (379)
.. +.||.- +--++++||+++|+|+|+..... ...+. ..+.|+.+ -+.+++.+++.+++.++
T Consensus 328 h~~v~~fvtH----~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~ 403 (446)
T PLN00414 328 HPSVGCFVNH----CGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKD 403 (446)
T ss_pred CCccceEEec----CchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHHHHhcCC
Confidence 66 446532 23467999999999999988733 22332 34666555 17889999999999764
No 175
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=88.20 E-value=0.64 Score=42.59 Aligned_cols=62 Identities=21% Similarity=0.163 Sum_probs=43.3
Q ss_pred HHHhhcCEEEecCCCCcchhHHHHHHHcCC-eEEecCC---CcccccccCCCEEEeC--CHHHHHHHH
Q 016975 209 LIFHDYKVFLNPSTTDVVCTTTAEALAMGK-IVVCANH---PSNDFFKQFPNCRTYD--DRNGFVEAT 270 (379)
Q Consensus 209 ~~~~~~dv~v~ps~~E~~~~~~~EAma~G~-PVI~t~~---g~~e~i~~~~~g~~~~--~~~~l~~~i 270 (379)
+.|+.+.+++.|.-...+..-+.|||++|| |||.++. +-.+++.=..-.+.++ +..++.+.|
T Consensus 232 ~~l~~S~FCL~p~G~~~~s~Rl~eal~~GcIPVii~d~~~lPf~~~ldw~~fsv~v~~~~~~~l~~iL 299 (302)
T PF03016_consen 232 ELLRNSKFCLCPRGDGPWSRRLYEALAAGCIPVIISDDYVLPFEDVLDWSRFSVRVPEADLPELPEIL 299 (302)
T ss_pred HhcccCeEEEECCCCCcccchHHHHhhhceeeEEecCcccCCcccccCHHHEEEEECHHHHHHHHHHH
Confidence 789999999998877678889999999999 8888775 2255553223345555 444444433
No 176
>PLN00164 glucosyltransferase; Provisional
Probab=88.03 E-value=9.5 Score=37.70 Aligned_cols=77 Identities=9% Similarity=-0.087 Sum_probs=51.8
Q ss_pred eEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCC-Cc---cc-cc-ccCCCEEEeC---------C
Q 016975 198 VRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH-PS---ND-FF-KQFPNCRTYD---------D 262 (379)
Q Consensus 198 v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~-g~---~e-~i-~~~~~g~~~~---------~ 262 (379)
+.+.++.++.+ ++...++-.+-++ -| -++++||+++|+|+|+-.. +. +. .+ ..-+.|+... +
T Consensus 341 ~~v~~w~PQ~~-iL~h~~vg~fvtH-~G-wnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~ 417 (480)
T PLN00164 341 LVWPTWAPQKE-ILAHAAVGGFVTH-CG-WNSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVE 417 (480)
T ss_pred eEEeecCCHHH-HhcCcccCeEEee-cc-cchHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCcCc
Confidence 34457877776 7777765333332 23 3479999999999999887 43 21 23 3345675541 5
Q ss_pred HHHHHHHHHHHHhCC
Q 016975 263 RNGFVEATLKALAEE 277 (379)
Q Consensus 263 ~~~l~~~i~~~l~~~ 277 (379)
.+++.++|.+++.++
T Consensus 418 ~e~l~~av~~vm~~~ 432 (480)
T PLN00164 418 AAELERAVRSLMGGG 432 (480)
T ss_pred HHHHHHHHHHHhcCC
Confidence 789999999999764
No 177
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=88.02 E-value=4.7 Score=37.89 Aligned_cols=96 Identities=16% Similarity=0.160 Sum_probs=59.5
Q ss_pred ceEEEEEec-ccccCH--HHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCe-----eEEecCCCCHH--HHH
Q 016975 142 KGAYYIGKM-VWSKGY--KELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIV-----VRVYPGRDHAD--LIF 211 (379)
Q Consensus 142 ~~il~vgrl-~~~Kg~--~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~-----v~~~g~~~~~~--~~~ 211 (379)
.+++..|.- .+.|.+ +...+.++.+.+ .++++++.|+..+.+..++..+..+.. +.+.|..+=.+ .++
T Consensus 182 ~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~--~~~~vvl~Gg~~e~~~~~~i~~~~~~~~~~~~~~l~g~~sL~el~ali 259 (348)
T PRK10916 182 IIGFCPGAEFGPAKRWPHYHYAELAQQLID--EGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLEQAVILI 259 (348)
T ss_pred EEEEeCCCCCccccCCCHHHHHHHHHHHHH--CCCeEEEEeCHHhHHHHHHHHHhcccccccceeeccCCCCHHHHHHHH
Confidence 345555542 344544 345555555543 367888899777766555555443321 34446554444 999
Q ss_pred hhcCEEEecCCCCcchhHHHHHHHcCCeEEecC
Q 016975 212 HDYKVFLNPSTTDVVCTTTAEALAMGKIVVCAN 244 (379)
Q Consensus 212 ~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~ 244 (379)
+.|+++|-.-. ..+-=|.|.|+|+|+--
T Consensus 260 ~~a~l~I~nDT-----Gp~HlAaA~g~P~valf 287 (348)
T PRK10916 260 AACKAIVTNDS-----GLMHVAAALNRPLVALY 287 (348)
T ss_pred HhCCEEEecCC-----hHHHHHHHhCCCEEEEE
Confidence 99999996642 24667899999999743
No 178
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=87.49 E-value=31 Score=34.06 Aligned_cols=78 Identities=15% Similarity=0.057 Sum_probs=53.9
Q ss_pred eeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCC-Cc----cccc-ccCCCEEEeC------CHH
Q 016975 197 VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH-PS----NDFF-KQFPNCRTYD------DRN 264 (379)
Q Consensus 197 ~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~-g~----~e~i-~~~~~g~~~~------~~~ 264 (379)
.+.+.+++++.+ ++....+-.+-+. +--++++||+.+|+|+|+... +. ...+ ...+.|+..+ +.+
T Consensus 339 g~vv~~W~PQ~~-iL~h~~vg~FitH--~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~ 415 (481)
T PLN02992 339 GFVVPSWAPQAE-ILAHQAVGGFLTH--CGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPKEVISRS 415 (481)
T ss_pred CEEEeecCCHHH-HhCCcccCeeEec--CchhHHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCCCCcccHH
Confidence 456668888776 7777766333332 234579999999999999988 33 2233 2445665542 778
Q ss_pred HHHHHHHHHHhCC
Q 016975 265 GFVEATLKALAEE 277 (379)
Q Consensus 265 ~l~~~i~~~l~~~ 277 (379)
++.+++.+++.++
T Consensus 416 ~l~~av~~vm~~~ 428 (481)
T PLN02992 416 KIEALVRKVMVEE 428 (481)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999998764
No 179
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=85.80 E-value=26 Score=31.95 Aligned_cols=85 Identities=19% Similarity=0.138 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHhHhhcCCcEEEEEcC--CcChHHHHHHHHhcCCeeEEecCCCCHH--HHHhhcCEEEecCCCCcchhHH
Q 016975 155 GYKELLELLDDHQKELAGLEVDLYGN--GEDFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTT 230 (379)
Q Consensus 155 g~~~li~a~~~l~~~~~~~~l~i~G~--g~~~~~l~~~~~~~~l~v~~~g~~~~~~--~~~~~~dv~v~ps~~E~~~~~~ 230 (379)
.++.+.+++..+.++. +.+++++.. ..|....+.....+.....+....+..+ .++++||++|-...+ .+
T Consensus 189 ~~~~l~~~l~~l~~~~-g~~v~~i~~~~~~D~~~~~~l~~~~~~~~~i~~~~~~~e~~~~i~~~~~vI~~RlH-----~~ 262 (298)
T TIGR03609 189 RLLRLLRALDRLQRDT-GAFVLFLPFQQPQDLPLARALRDQLLGPAEVLSPLDPEELLGLFASARLVIGMRLH-----AL 262 (298)
T ss_pred HHHHHHHHHHHHHHhh-CCeEEEEeCCcchhHHHHHHHHHhcCCCcEEEecCCHHHHHHHHhhCCEEEEechH-----HH
Confidence 3556777777776542 455544442 3455555555555433334443233333 789999998877665 47
Q ss_pred HHHHHcCCeEEecCC
Q 016975 231 AEALAMGKIVVCANH 245 (379)
Q Consensus 231 ~EAma~G~PVI~t~~ 245 (379)
+=|+.+|+|+|+-..
T Consensus 263 I~A~~~gvP~i~i~y 277 (298)
T TIGR03609 263 ILAAAAGVPFVALSY 277 (298)
T ss_pred HHHHHcCCCEEEeec
Confidence 889999999998754
No 180
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=85.78 E-value=5.7 Score=37.39 Aligned_cols=98 Identities=14% Similarity=0.151 Sum_probs=58.9
Q ss_pred cceEEEEEecccccCHH--HHHHHHHHhHhhcCCcEEEEEcCCc--ChHHHHHHHHhcC-Ce-eEEecCCCCHH--HHHh
Q 016975 141 AKGAYYIGKMVWSKGYK--ELLELLDDHQKELAGLEVDLYGNGE--DFNQIQEAAEKLK-IV-VRVYPGRDHAD--LIFH 212 (379)
Q Consensus 141 ~~~il~vgrl~~~Kg~~--~li~a~~~l~~~~~~~~l~i~G~g~--~~~~l~~~~~~~~-l~-v~~~g~~~~~~--~~~~ 212 (379)
+.++++.|.-.+.|.+. ...+.++.+.+. ++++++.|... +....++..+... .. +.+.|..+=.+ .+++
T Consensus 184 ~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~--~~~vvl~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~ 261 (352)
T PRK10422 184 NYVVIQPTARQIFKCWDNDKFSAVIDALQAR--GYEVVLTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALID 261 (352)
T ss_pred CeEEEecCCCccccCCCHHHHHHHHHHHHHC--CCeEEEEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHH
Confidence 44666777544555543 556666666433 57788887543 2333344443322 12 34457665555 9999
Q ss_pred hcCEEEecCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 213 DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 213 ~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
.||++|-.. + ..+-=|.|+|+|+|+---
T Consensus 262 ~a~l~v~nD---S--Gp~HlAaA~g~P~v~lfG 289 (352)
T PRK10422 262 HAQLFIGVD---S--APAHIAAAVNTPLICLFG 289 (352)
T ss_pred hCCEEEecC---C--HHHHHHHHcCCCEEEEEC
Confidence 999999663 2 245667899999998543
No 181
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=83.48 E-value=7.6 Score=36.37 Aligned_cols=96 Identities=15% Similarity=0.147 Sum_probs=57.4
Q ss_pred ceEEEEEecccccCH--HHHHHHHHHhHhhcCCcEEEEEcCCc--ChHHHHHHHHhcCC-e-eEEecCCCCHH--HHHhh
Q 016975 142 KGAYYIGKMVWSKGY--KELLELLDDHQKELAGLEVDLYGNGE--DFNQIQEAAEKLKI-V-VRVYPGRDHAD--LIFHD 213 (379)
Q Consensus 142 ~~il~vgrl~~~Kg~--~~li~a~~~l~~~~~~~~l~i~G~g~--~~~~l~~~~~~~~l-~-v~~~g~~~~~~--~~~~~ 213 (379)
.+++..|.-.+.|.+ +...+.++.+.+. +..+++.|... +.+..++..+..+. + +.+.|..+=.+ .+++.
T Consensus 183 ~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~--~~~ivl~g~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~ 260 (344)
T TIGR02201 183 YIVIQPTSRWFFKCWDNDRFSALIDALHAR--GYEVVLTSGPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALIDH 260 (344)
T ss_pred EEEEeCCCCccccCCCHHHHHHHHHHHHhC--CCeEEEecCCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHHHHHh
Confidence 345555643344444 4555555555443 57788888643 22334444333322 2 33456665455 99999
Q ss_pred cCEEEecCCCCcchhHHHHHHHcCCeEEecC
Q 016975 214 YKVFLNPSTTDVVCTTTAEALAMGKIVVCAN 244 (379)
Q Consensus 214 ~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~ 244 (379)
||++|-.. + ..+-=|.|+|+|+|+--
T Consensus 261 a~l~Vs~D---S--Gp~HlAaA~g~p~v~Lf 286 (344)
T TIGR02201 261 ARLFIGVD---S--VPMHMAAALGTPLVALF 286 (344)
T ss_pred CCEEEecC---C--HHHHHHHHcCCCEEEEE
Confidence 99999763 2 24666889999999853
No 182
>PLN02534 UDP-glycosyltransferase
Probab=83.00 E-value=22 Score=35.23 Aligned_cols=76 Identities=7% Similarity=-0.085 Sum_probs=49.4
Q ss_pred eeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc-c----cccc-cCCCEEEe----------
Q 016975 197 VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-N----DFFK-QFPNCRTY---------- 260 (379)
Q Consensus 197 ~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-~----e~i~-~~~~g~~~---------- 260 (379)
.+.+.+++++.+ ++...++-.+-+ -+-.++++||+++|+|+|+-.... . ..+. .-+.|+-+
T Consensus 345 g~~v~~w~pq~~-iL~h~~v~~fvt--H~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~ 421 (491)
T PLN02534 345 GLLIKGWAPQVL-ILSHPAIGGFLT--HCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGD 421 (491)
T ss_pred CeeccCCCCHHH-HhcCCccceEEe--cCccHHHHHHHHcCCCEEeccccccHHHHHHHHHHhhcceEEecccccccccc
Confidence 555668888865 777777633322 233458999999999999988733 1 1222 22333211
Q ss_pred -------CCHHHHHHHHHHHHh
Q 016975 261 -------DDRNGFVEATLKALA 275 (379)
Q Consensus 261 -------~~~~~l~~~i~~~l~ 275 (379)
-+.++++.++.+++.
T Consensus 422 ~~~~~~~v~~eev~~~v~~~m~ 443 (491)
T PLN02534 422 EERVGVLVKKDEVEKAVKTLMD 443 (491)
T ss_pred cccccCccCHHHHHHHHHHHhc
Confidence 267889999999886
No 183
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=81.85 E-value=14 Score=36.36 Aligned_cols=79 Identities=16% Similarity=0.113 Sum_probs=47.5
Q ss_pred eeEEecCCCCHHHHHhh--cCEEEecCCCCcchhHHHHHHHcCCeEEecCC-Cc----ccccc-cCCCEEEeC---CHHH
Q 016975 197 VVRVYPGRDHADLIFHD--YKVFLNPSTTDVVCTTTAEALAMGKIVVCANH-PS----NDFFK-QFPNCRTYD---DRNG 265 (379)
Q Consensus 197 ~v~~~g~~~~~~~~~~~--~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~-g~----~e~i~-~~~~g~~~~---~~~~ 265 (379)
++.+.+++++.+-++.. ..+|| + +-|++- ++||+.+|+|+|+... |. ...+. .+..++... +...
T Consensus 336 nV~~~~W~PQ~~lll~H~~v~~Fv--T-HgG~nS-t~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~~v~~~~~~~~~~ 411 (496)
T KOG1192|consen 336 NVVLSKWAPQNDLLLDHPAVGGFV--T-HGGWNS-TLESIYSGVPMVCVPLFGDQPLNARLLVRHGGGGVLDKRDLVSEE 411 (496)
T ss_pred ceEEecCCCcHHHhcCCCcCcEEE--E-CCcccH-HHHHHhcCCceecCCccccchhHHHHHHhCCCEEEEehhhcCcHH
Confidence 56666899998844222 23444 2 344444 4999999999998776 54 22333 334333333 3334
Q ss_pred HHHHHHHHHhCCCC
Q 016975 266 FVEATLKALAEEPA 279 (379)
Q Consensus 266 l~~~i~~~l~~~~~ 279 (379)
+.+++..+++++..
T Consensus 412 ~~~~~~~il~~~~y 425 (496)
T KOG1192|consen 412 LLEAIKEILENEEY 425 (496)
T ss_pred HHHHHHHHHcChHH
Confidence 78888888776543
No 184
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=77.60 E-value=72 Score=31.00 Aligned_cols=115 Identities=11% Similarity=0.118 Sum_probs=68.3
Q ss_pred HHHHHHHHhHhhcCCcEEEEEcC-------CcC-hHHHHHHHHhcCC--eeEEe-cCCCCHH--HHHhhcCEEEecCCCC
Q 016975 158 ELLELLDDHQKELAGLEVDLYGN-------GED-FNQIQEAAEKLKI--VVRVY-PGRDHAD--LIFHDYKVFLNPSTTD 224 (379)
Q Consensus 158 ~li~a~~~l~~~~~~~~l~i~G~-------g~~-~~~l~~~~~~~~l--~v~~~-g~~~~~~--~~~~~~dv~v~ps~~E 224 (379)
.+.+++..+.++ +.+++++-. +++ ....++..+.+.. ++++. ...+..+ .+++.||++|-.-.+
T Consensus 261 ~la~~i~~Li~~--g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~~~~~~~vi~~~~~~~e~~~iIs~~dl~ig~RlH- 337 (426)
T PRK10017 261 AFAGVVNRIIDE--GYQVIALSTCTGIDSYNKDDRMVALNLRQHVSDPARYHVVMDELNDLEMGKILGACELTVGTRLH- 337 (426)
T ss_pred HHHHHHHHHHHC--CCeEEEEecccCccCCCCchHHHHHHHHHhcccccceeEecCCCChHHHHHHHhhCCEEEEecch-
Confidence 445566666554 444444331 233 2323444444432 23333 4445555 899999999977654
Q ss_pred cchhHHHHHHHcCCeEEecCCCc--ccccccCC-CEEEeC----CHHHHHHHHHHHHhCCCC
Q 016975 225 VVCTTTAEALAMGKIVVCANHPS--NDFFKQFP-NCRTYD----DRNGFVEATLKALAEEPA 279 (379)
Q Consensus 225 ~~~~~~~EAma~G~PVI~t~~g~--~e~i~~~~-~g~~~~----~~~~l~~~i~~~l~~~~~ 279 (379)
.++=|+++|+|+|+-.... ..++.+-. ..++.+ +.+++.+.+.+++++.+.
T Consensus 338 ----a~I~a~~~gvP~i~i~Y~~K~~~~~~~lg~~~~~~~~~~l~~~~Li~~v~~~~~~r~~ 395 (426)
T PRK10017 338 ----SAIISMNFGTPAIAINYEHKSAGIMQQLGLPEMAIDIRHLLDGSLQAMVADTLGQLPA 395 (426)
T ss_pred ----HHHHHHHcCCCEEEeeehHHHHHHHHHcCCccEEechhhCCHHHHHHHHHHHHhCHHH
Confidence 4788999999999988733 34443321 113333 778899999998887543
No 185
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=77.52 E-value=49 Score=29.02 Aligned_cols=88 Identities=11% Similarity=0.082 Sum_probs=49.8
Q ss_pred ccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHH---HHHHH--HhcCCeeEEecCCCC-HH--HHHhhcCEEEecCCCC
Q 016975 153 SKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQ---IQEAA--EKLKIVVRVYPGRDH-AD--LIFHDYKVFLNPSTTD 224 (379)
Q Consensus 153 ~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~---l~~~~--~~~~l~v~~~g~~~~-~~--~~~~~~dv~v~ps~~E 224 (379)
..-.+.+.+.+..+.+....+.++.....+.... ..... .....++........ .+ ++++.++++|-...+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Is~RlH- 267 (286)
T PF04230_consen 189 EEYIEEIAELIQRLLDKGYKIVLLPFSPSDDDEDDDDFNEIDIKAEKFFNVIIIDYSLSPDELLELISQADLVISMRLH- 267 (286)
T ss_pred hhHHHHHHHHHHHhhcccceeEEEEeeeccchhhHHHHHhhhhhcccccceeEecCCCCHHHHHHHHhcCCEEEecCCH-
Confidence 3445555666666665434444444443332111 11111 222223444434333 33 999999999988776
Q ss_pred cchhHHHHHHHcCCeEEecCC
Q 016975 225 VVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 225 ~~~~~~~EAma~G~PVI~t~~ 245 (379)
..+=|+++|+|+|+-..
T Consensus 268 ----~~I~a~~~g~P~i~i~y 284 (286)
T PF04230_consen 268 ----GAILALSLGVPVIAISY 284 (286)
T ss_pred ----HHHHHHHcCCCEEEEec
Confidence 46789999999998643
No 186
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=76.23 E-value=22 Score=29.30 Aligned_cols=68 Identities=4% Similarity=-0.084 Sum_probs=47.6
Q ss_pred ccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCC-CCHHHHHhhcCEEEecC
Q 016975 153 SKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGR-DHADLIFHDYKVFLNPS 221 (379)
Q Consensus 153 ~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~-~~~~~~~~~~dv~v~ps 221 (379)
.=.+...++++..+....-+.-+++-||++- ..+-..+++.|..|..+|.- ..++++.++||-|+.-.
T Consensus 88 ~~Dv~laIDame~~~~~~iD~~vLvSgD~DF-~~Lv~~lre~G~~V~v~g~~~~ts~~L~~acd~FI~L~ 156 (160)
T TIGR00288 88 DVDVRMAVEAMELIYNPNIDAVALVTRDADF-LPVINKAKENGKETIVIGAEPGFSTALQNSADIAIILG 156 (160)
T ss_pred cccHHHHHHHHHHhccCCCCEEEEEeccHhH-HHHHHHHHHCCCEEEEEeCCCCChHHHHHhcCeEEeCC
Confidence 4557788999987754444665555666554 55555666779999999843 34558999999998654
No 187
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=75.65 E-value=55 Score=28.68 Aligned_cols=148 Identities=9% Similarity=-0.141 Sum_probs=67.3
Q ss_pred hcCEEEecCCC-CcchhHHHHHHHcCCeEEecCCCcccccccCCCEEEeCCHHHHHHHHHHHHhCCCCCCcHH-HHhcCC
Q 016975 213 DYKVFLNPSTT-DVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEEPALPTEA-QRHQLS 290 (379)
Q Consensus 213 ~~dv~v~ps~~-E~~~~~~~EAma~G~PVI~t~~g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~~~~~~~~~~-~~~~~s 290 (379)
.+|.++..+.. +... .+-++...|+|||.-+....+ ...+.+..++.+....+...++........-- ......
T Consensus 55 ~vdgiii~~~~~~~~~-~~~~~~~~~ipvV~~~~~~~~---~~~~~v~~d~~~~~~~~~~~l~~~g~~~i~~l~~~~~~~ 130 (268)
T cd06289 55 GVAGIILCPAAGTSPD-LLKRLAESGIPVVLVAREVAG---APFDYVGPDNAAGARLATEHLISLGHRRIAFIGGLEDSS 130 (268)
T ss_pred CCCEEEEeCCCCccHH-HHHHHHhcCCCEEEEeccCCC---CCCCEEeecchHHHHHHHHHHHHCCCCCEEEecCCcccc
Confidence 35766554433 3332 456777899999998653221 11223444455555556666655433321110 000111
Q ss_pred H-HHHHHHHHHHHhcccccccCCCCCCCccccccchhHHHhHHHHHHHHHHHhcCCcccceeecccCCCCCchHHHHHHh
Q 016975 291 W-ESATERFLQVAELDQAVVKKPSKSPSKHFASTSLNLKKNMEEASAYVHFLASGFETSRRAFGAIPGSLHPDEELCKEL 369 (379)
Q Consensus 291 w-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 369 (379)
+ ....+-+.+.++... ... . .. ...... ...+.+...+..++...+....+|+..........+.+++.
T Consensus 131 ~~~~r~~gf~~~l~~~~--~~~--~--~~--~~~~~~--~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~a~~~~~al~~~ 200 (268)
T cd06289 131 TRRERLAGYRAALAEAG--LPF--D--SE--LVVEGP--PSRQGGAEAVAQLLDLPPRPTAIVCFNDLVAFGAMSGLRRA 200 (268)
T ss_pred chHHHHHHHHHHHHHcC--CCC--C--ch--hEEecC--cchhhHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHHHc
Confidence 1 112233333332110 000 0 00 000000 01123333444555544456777776655444567888899
Q ss_pred CCCCC
Q 016975 370 GLVTP 374 (379)
Q Consensus 370 ~~~~~ 374 (379)
|+..|
T Consensus 201 g~~~p 205 (268)
T cd06289 201 GLTPG 205 (268)
T ss_pred CCCCC
Confidence 98766
No 188
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=74.58 E-value=9.8 Score=34.37 Aligned_cols=79 Identities=14% Similarity=0.132 Sum_probs=49.9
Q ss_pred CCCcEEEEcCCcchhhhhcccccccccC-cEEEEeccChHHHHHHh--h------cchHHHHHHHHHHHHHHHHh--cce
Q 016975 28 EVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKRE--K------NGRLQAFLLKYANSWLVDIY--CHK 96 (379)
Q Consensus 28 ~~~DvV~~~~p~~~~~~~~~~~~~~~~~-~vv~~~h~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~~--~d~ 96 (379)
-+.||+|+.+...-+.. +...+.+.. |++.+-|+.+.+....+ . ....+..+.+++..+....| ||.
T Consensus 171 P~advyHsvstGyAgl~--g~~~k~~~g~P~lLTEHGIY~RER~~ei~~a~w~~~~~~~r~~wi~~f~~l~~~~Y~~Ad~ 248 (268)
T PF11997_consen 171 PKADVYHSVSTGYAGLL--GALAKYRYGRPFLLTEHGIYTREREIEILQADWIWESPYVRDLWIRFFESLSRLAYRAADR 248 (268)
T ss_pred CCCCEEecCCccHHHHH--HHHHHHHhCCCEEEecCCccHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhhCe
Confidence 35799999765544444 233444444 99999999876644321 1 12345555566666655555 999
Q ss_pred EEEcChhhhhhh
Q 016975 97 VIRLSAATQEYA 108 (379)
Q Consensus 97 vi~~S~~~~~~~ 108 (379)
|+++++..+.+.
T Consensus 249 I~~l~~~n~~~q 260 (268)
T PF11997_consen 249 ITPLYEYNREWQ 260 (268)
T ss_pred ecccchhhHHHH
Confidence 999998766554
No 189
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=74.50 E-value=34 Score=27.12 Aligned_cols=95 Identities=14% Similarity=0.161 Sum_probs=58.9
Q ss_pred cceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHh--hcCEEE
Q 016975 141 AKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFL 218 (379)
Q Consensus 141 ~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~--~~dv~v 218 (379)
+..+..+. ..+|++.|.+...++ +.+.+++.+....+.+++.....+..++++.+.+.-.++.. .+|+.|
T Consensus 24 ~f~v~~Ls---a~~n~~~L~~q~~~f-----~p~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G~~~l~~~~~~~~~D~vv 95 (129)
T PF02670_consen 24 KFEVVALS---AGSNIEKLAEQAREF-----KPKYVVIADEEAYEELKKALPSKGPGIEVLSGPEGLEELAEEPEVDIVV 95 (129)
T ss_dssp TEEEEEEE---ESSTHHHHHHHHHHH-----T-SEEEESSHHHHHHHHHHHHHTTSSSEEEESHHHHHHHHTHTT-SEEE
T ss_pred ceEEEEEE---cCCCHHHHHHHHHHh-----CCCEEEEcCHHHHHHHHHHhhhcCCCCEEEeChHHHHHHhcCCCCCEEE
Confidence 34444443 389999999888876 23466667666667777766555667777755544445554 568888
Q ss_pred ecCCCCcch-hHHHHHHHcCCeEEecC
Q 016975 219 NPSTTDVVC-TTTAEALAMGKIVVCAN 244 (379)
Q Consensus 219 ~ps~~E~~~-~~~~EAma~G~PVI~t~ 244 (379)
+...- .-| .++++|+..|+-+--.+
T Consensus 96 ~Ai~G-~aGL~pt~~Ai~~gk~iaLAN 121 (129)
T PF02670_consen 96 NAIVG-FAGLKPTLAAIKAGKDIALAN 121 (129)
T ss_dssp E--SS-GGGHHHHHHHHHTTSEEEE--
T ss_pred EeCcc-cchHHHHHHHHHCCCeEEEec
Confidence 87542 223 35889999998776544
No 190
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=74.01 E-value=16 Score=31.31 Aligned_cols=91 Identities=13% Similarity=0.018 Sum_probs=55.8
Q ss_pred ccCHHHHHHHHHHhHhhcCCcEEEEEcCCcC-hHHHHHHHHhcCC---eeEEecCC-CCHH-HHHhhcCEEEecCCCCcc
Q 016975 153 SKGYKELLELLDDHQKELAGLEVDLYGNGED-FNQIQEAAEKLKI---VVRVYPGR-DHAD-LIFHDYKVFLNPSTTDVV 226 (379)
Q Consensus 153 ~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~l---~v~~~g~~-~~~~-~~~~~~dv~v~ps~~E~~ 226 (379)
.|=+..|..|+.-+..-. .-+++++|..+. ...+++.++..+. +-+|+|+. .+.. .-+..=|+++.....+ -
T Consensus 43 ~kT~~~L~~A~~~i~~i~-~~~ILfVgtk~~~~~~V~~~A~~~g~~~v~~RWlgGtLTN~~~~~~~~Pdlliv~dp~~-~ 120 (196)
T TIGR01012 43 RKTDERLRVAAKFLVRIE-PEDILVVSARIYGQKPVLKFAKVTGARAIAGRFTPGTFTNPMQKAFREPEVVVVTDPRA-D 120 (196)
T ss_pred HHHHHHHHHHHHHHHHhh-CCeEEEEecCHHHHHHHHHHHHHhCCceECCeeCCCCCCCccccccCCCCEEEEECCcc-c
Confidence 455555566655554333 457999998776 4446666666654 34677664 3333 3334446666543322 2
Q ss_pred hhHHHHHHHcCCeEEecCC
Q 016975 227 CTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 227 ~~~~~EAma~G~PVI~t~~ 245 (379)
..++.||..+|+|+|+--.
T Consensus 121 ~~Av~EA~~l~IP~Iai~D 139 (196)
T TIGR01012 121 HQALKEASEVGIPIVALCD 139 (196)
T ss_pred cHHHHHHHHcCCCEEEEee
Confidence 4579999999999999655
No 191
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=73.50 E-value=11 Score=28.27 Aligned_cols=71 Identities=11% Similarity=0.130 Sum_probs=46.1
Q ss_pred EEEEcCCcC----hHHHHHHHHhcCCeeEEe-cCCCCHHHHHhhcCEEEecCCCCcchhHHHH-HHHcCCeEEecCC
Q 016975 175 VDLYGNGED----FNQIQEAAEKLKIVVRVY-PGRDHADLIFHDYKVFLNPSTTDVVCTTTAE-ALAMGKIVVCANH 245 (379)
Q Consensus 175 l~i~G~g~~----~~~l~~~~~~~~l~v~~~-g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~E-Ama~G~PVI~t~~ 245 (379)
++++|.|-. .+.+++.+++.|+++.+. ......++....+|+++.....--.=-.+-| +-..|+||...+.
T Consensus 4 ll~C~~GaSSs~la~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~~ipv~~I~~ 80 (99)
T cd05565 4 LVLCAGGGTSGLLANALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAPQMASYYDELKKDTDRLGIKLVTTTG 80 (99)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcChHHHHHHHHHHHhhhcCCCEEEeCH
Confidence 677888855 466888889999988776 3344444778889988876543211112222 3456889988663
No 192
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=73.20 E-value=49 Score=27.54 Aligned_cols=106 Identities=16% Similarity=0.088 Sum_probs=59.4
Q ss_pred HHHHHHHhHhhcCCcEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCC-CCHHHHHhhcCEEEecCCCCcchhHHHHHHHc
Q 016975 159 LLELLDDHQKELAGLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGR-DHADLIFHDYKVFLNPSTTDVVCTTTAEALAM 236 (379)
Q Consensus 159 li~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~-~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~ 236 (379)
.++.++++.....+-+++|+|.|.. -..+-....+.+.++.+.... ++..+.++.||++|...-... +...|.+.-
T Consensus 31 ~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~~~l~~aDiVIsat~~~~--ii~~~~~~~ 108 (168)
T cd01080 31 ILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLKEHTKQADIVIVAVGKPG--LVKGDMVKP 108 (168)
T ss_pred HHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHHHHHhhCCEEEEcCCCCc--eecHHHccC
Confidence 3444444433346789999999986 343555555666666666554 233389999999998876532 233344444
Q ss_pred CCeEEecCCCcccccccCCCEEEeC-CHHHHHH
Q 016975 237 GKIVVCANHPSNDFFKQFPNCRTYD-DRNGFVE 268 (379)
Q Consensus 237 G~PVI~t~~g~~e~i~~~~~g~~~~-~~~~l~~ 268 (379)
| .+.-|.+....+......+.-+ |.+...+
T Consensus 109 ~--~viIDla~prdvd~~~~~~~G~~d~~~~~~ 139 (168)
T cd01080 109 G--AVVIDVGINRVPDKSGGKLVGDVDFESAKE 139 (168)
T ss_pred C--eEEEEccCCCcccccCCCeeCCcCHHHHHh
Confidence 4 4444554433333222223333 5555433
No 193
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=72.72 E-value=32 Score=27.96 Aligned_cols=94 Identities=13% Similarity=0.151 Sum_probs=56.5
Q ss_pred eEEEEEecccccCHHHHHHHH------HHhHhhcCCcEEEE-EcCCc-C-hHHHHHHHHhcCCeeEEecCCCCHHHHHhh
Q 016975 143 GAYYIGKMVWSKGYKELLELL------DDHQKELAGLEVDL-YGNGE-D-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD 213 (379)
Q Consensus 143 ~il~vgrl~~~Kg~~~li~a~------~~l~~~~~~~~l~i-~G~g~-~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~ 213 (379)
.++.+|.-. ++.||.++ +++.+. .=.+++| +|.|. - .+......+..++.+..+.+.+.-++.++.
T Consensus 6 vFVTVGtT~----Fd~LI~~Vl~~~~~~~L~k~-G~~kLiiQ~Grg~~~~~d~~~~~~k~~gl~id~y~f~psl~e~I~~ 80 (170)
T KOG3349|consen 6 VFVTVGTTS----FDDLISCVLSEEFLQELQKR-GFTKLIIQIGRGQPFFGDPIDLIRKNGGLTIDGYDFSPSLTEDIRS 80 (170)
T ss_pred EEEEecccc----HHHHHHHHcCHHHHHHHHHc-CccEEEEEecCCccCCCCHHHhhcccCCeEEEEEecCccHHHHHhh
Confidence 566677544 55666443 333332 2234444 56552 1 122222234556677777777777789999
Q ss_pred cCEEEecCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 214 YKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 214 ~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
||++|--. -.-+++|-+..|+|.|.--+
T Consensus 81 AdlVIsHA----GaGS~letL~l~KPlivVvN 108 (170)
T KOG3349|consen 81 ADLVISHA----GAGSCLETLRLGKPLIVVVN 108 (170)
T ss_pred ccEEEecC----CcchHHHHHHcCCCEEEEeC
Confidence 99998532 23468999999999876544
No 194
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=72.70 E-value=6.8 Score=30.72 Aligned_cols=43 Identities=19% Similarity=0.222 Sum_probs=30.1
Q ss_pred CCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc
Q 016975 205 DHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS 247 (379)
Q Consensus 205 ~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~ 247 (379)
++.++++..+|+.|--|.-+..---+-.++.+|+|+|.-..|.
T Consensus 59 ~~l~~~~~~~DVvIDfT~p~~~~~~~~~~~~~g~~~ViGTTG~ 101 (124)
T PF01113_consen 59 DDLEELLEEADVVIDFTNPDAVYDNLEYALKHGVPLVIGTTGF 101 (124)
T ss_dssp S-HHHHTTH-SEEEEES-HHHHHHHHHHHHHHT-EEEEE-SSS
T ss_pred hhHHHhcccCCEEEEcCChHHhHHHHHHHHhCCCCEEEECCCC
Confidence 3444888889999988866666666778889999999987766
No 195
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=70.83 E-value=10 Score=28.21 Aligned_cols=70 Identities=20% Similarity=0.165 Sum_probs=44.8
Q ss_pred EEEEcCCcC----hHHHHHHHHhcCCeeEEe-cCCCCHHHHHhhcCEEEecCCCCcchhHHHHHH--HcCCeEEecCC
Q 016975 175 VDLYGNGED----FNQIQEAAEKLKIVVRVY-PGRDHADLIFHDYKVFLNPSTTDVVCTTTAEAL--AMGKIVVCANH 245 (379)
Q Consensus 175 l~i~G~g~~----~~~l~~~~~~~~l~v~~~-g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAm--a~G~PVI~t~~ 245 (379)
++++|.|-. ...+++.+++.|+++.+. ....+.++....+|+++...... +-..-++.. ..|+||+..+.
T Consensus 7 Ll~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi~-~~~~~i~~~~~~~~ipv~~I~~ 83 (95)
T TIGR00853 7 LLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAPQVA-YMLPDLKKETDKKGIPVEVING 83 (95)
T ss_pred EEECCCchhHHHHHHHHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECchHH-HHHHHHHHHhhhcCCCEEEeCh
Confidence 778888765 345777788888877665 44444445667889888765432 223334433 45789998665
No 196
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=70.76 E-value=92 Score=29.07 Aligned_cols=41 Identities=5% Similarity=0.002 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhcCCcccceeecccCCCCCchHHHHHHhCCC
Q 016975 332 EEASAYVHFLASGFETSRRAFGAIPGSLHPDEELCKELGLV 372 (379)
Q Consensus 332 ~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 372 (379)
+.+...+..+|...+.+..+|+.........-+.+++.|..
T Consensus 194 ~~a~~~~~~lL~~~pdi~aI~~~~~~~~~Ga~~Al~~~g~~ 234 (336)
T PRK15408 194 TKSLQTAEGILKAYPDLDAIIAPDANALPAAAQAAENLKRD 234 (336)
T ss_pred HHHHHHHHHHHHHCCCCcEEEECCCccHHHHHHHHHhCCCC
Confidence 35666677777777778888887443433467777777753
No 197
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=70.23 E-value=21 Score=30.77 Aligned_cols=92 Identities=14% Similarity=0.083 Sum_probs=56.4
Q ss_pred cccCHHHHHHHHHHhHhhcCCcEEEEEcCCcC-hHHHHHHHHhcCC---eeEEecCC-CCHH-HHHhhcCEEEecCCCCc
Q 016975 152 WSKGYKELLELLDDHQKELAGLEVDLYGNGED-FNQIQEAAEKLKI---VVRVYPGR-DHAD-LIFHDYKVFLNPSTTDV 225 (379)
Q Consensus 152 ~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~l---~v~~~g~~-~~~~-~~~~~~dv~v~ps~~E~ 225 (379)
-.|=+..|..|+.-+... .+-+++++|..+. ...+++.+...+. +-+++|+. .+.. .-+..=|+++.....+
T Consensus 48 L~kT~~~L~~A~~~i~~~-~~~~ILfVgTk~~~~~~v~k~A~~~g~~~v~~RWlgG~LTN~~~~~~~~Pdliiv~dp~~- 125 (204)
T PRK04020 48 VRKTDERIRIAAKFLSRY-EPEKILVVSSRQYGQKPVQKFAEVVGAKAITGRFIPGTLTNPSLKGYIEPDVVVVTDPRG- 125 (204)
T ss_pred HHHHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHhCCeeecCccCCCcCcCcchhccCCCCEEEEECCcc-
Confidence 345556666666655543 3456888898776 3456666666665 33677654 3333 2222336555544322
Q ss_pred chhHHHHHHHcCCeEEecCC
Q 016975 226 VCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 226 ~~~~~~EAma~G~PVI~t~~ 245 (379)
-..++.||...|+|+|+--.
T Consensus 126 ~~~AI~EA~kl~IP~IaivD 145 (204)
T PRK04020 126 DAQAVKEAIEVGIPVVALCD 145 (204)
T ss_pred cHHHHHHHHHhCCCEEEEEe
Confidence 25689999999999999654
No 198
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.99 E-value=16 Score=36.81 Aligned_cols=132 Identities=13% Similarity=0.025 Sum_probs=81.3
Q ss_pred EEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCC-cChHHHHHHHHhcCC---eeEEecCCCCHH--HHHhhcCEE
Q 016975 144 AYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNG-EDFNQIQEAAEKLKI---VVRVYPGRDHAD--LIFHDYKVF 217 (379)
Q Consensus 144 il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g-~~~~~l~~~~~~~~l---~v~~~g~~~~~~--~~~~~~dv~ 217 (379)
|+|..=-.-.|=-...++.+.++..+.|+-.|++.--. --...++..+.++|+ ++.|..-...++ .-++.+||.
T Consensus 760 vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge~rf~ty~~~~Gl~p~riifs~va~k~eHvrr~~LaDv~ 839 (966)
T KOG4626|consen 760 VVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEQRFRTYAEQLGLEPDRIIFSPVAAKEEHVRRGQLADVC 839 (966)
T ss_pred EEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccchHHHHHHHHHhCCCccceeeccccchHHHHHhhhhhhhc
Confidence 33433223356566788888888888898777765421 112678888888888 444544444444 667778999
Q ss_pred EecCCCCcchhHHHHHHHcCCeEEecCC-------CcccccccCCCE-EEeCCHHHHHHHHHHHHhCC
Q 016975 218 LNPSTTDVVCTTTAEALAMGKIVVCANH-------PSNDFFKQFPNC-RTYDDRNGFVEATLKALAEE 277 (379)
Q Consensus 218 v~ps~~E~~~~~~~EAma~G~PVI~t~~-------g~~e~i~~~~~g-~~~~~~~~l~~~i~~~l~~~ 277 (379)
+-+....|- .+-.|.+.+|+|+|+-.. ++.....-+ .| ++..+.++..+.--++-+|.
T Consensus 840 LDTplcnGh-TTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~G-l~hliak~~eEY~~iaV~Latd~ 905 (966)
T KOG4626|consen 840 LDTPLCNGH-TTGMDVLWAGVPMVTMPGETLASRVAASLLTALG-LGHLIAKNREEYVQIAVRLATDK 905 (966)
T ss_pred ccCcCcCCc-ccchhhhccCCceeecccHHHHHHHHHHHHHHcc-cHHHHhhhHHHHHHHHHHhhcCH
Confidence 877665443 346789999999997543 222222222 23 44557777777666655543
No 199
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=69.87 E-value=28 Score=23.00 Aligned_cols=62 Identities=19% Similarity=0.209 Sum_probs=42.5
Q ss_pred cEEEEEcC--CcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecC
Q 016975 173 LEVDLYGN--GEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCAN 244 (379)
Q Consensus 173 ~~l~i~G~--g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~ 244 (379)
..+.+.|. +.+...+++.+...|..+. ..+. ..++.+|.+.....-. ...|...|+|||..+
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~v~--~~~~------~~~thvI~~~~~~~~~--~~~~~~~~~~iV~~~ 65 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGKVT--SSVS------KKTTHVIVGSDAGPKK--LLKAIKLGIPIVTPE 65 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCEEe--cccc------CCceEEEECCCCCchH--HHHHHHcCCeEecHH
Confidence 56888886 5778999999998886533 2211 4567777765432222 788899999999754
No 200
>PRK04531 acetylglutamate kinase; Provisional
Probab=69.60 E-value=17 Score=35.00 Aligned_cols=121 Identities=14% Similarity=0.124 Sum_probs=68.1
Q ss_pred cceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecC--CCCHH--HHHhhcCE
Q 016975 141 AKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPG--RDHAD--LIFHDYKV 216 (379)
Q Consensus 141 ~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~--~~~~~--~~~~~~dv 216 (379)
+..|+-+|.-.-....+.+++.+..+....-. -+++.|.|+..+ +..++.|+..++..+ +.+++ ++...+-.
T Consensus 37 ~~~VIKiGG~~l~~~~~~l~~dla~L~~~G~~-~VlVHGggpqI~---~~l~~~gie~~~v~G~RVTd~~tl~vv~~~l~ 112 (398)
T PRK04531 37 RFAVIKVGGAVLRDDLEALASSLSFLQEVGLT-PIVVHGAGPQLD---AELDAAGIEKETVNGLRVTSPEALAIVRKVFQ 112 (398)
T ss_pred cEEEEEEChHHhhcCHHHHHHHHHHHHHCCCc-EEEEECCCHHHH---HHHHHcCCCcEEECCEecCCHHHHHHHHHHHH
Confidence 55677777432224567888888877654322 366678887644 456677887777733 44444 33222111
Q ss_pred EEecCCCCcchhHHHHHHHcCC-eEEecCCCcccccccCCCEEEeC-CHHHHHHHHHHHHhC
Q 016975 217 FLNPSTTDVVCTTTAEALAMGK-IVVCANHPSNDFFKQFPNCRTYD-DRNGFVEATLKALAE 276 (379)
Q Consensus 217 ~v~ps~~E~~~~~~~EAma~G~-PVI~t~~g~~e~i~~~~~g~~~~-~~~~l~~~i~~~l~~ 276 (379)
-++....+. +-+++..|. |||+ ..|. ...|.+++ |.++++.++...+.-
T Consensus 113 ~vn~~lv~~----I~~~L~~g~IPVls-plg~------~~~G~~~NvnaD~vA~~LA~aL~a 163 (398)
T PRK04531 113 RSNLDLVEA----VESSLRAGSIPVIA-SLGE------TPSGQILNINADVAANELVSALQP 163 (398)
T ss_pred HHHHHHHHH----HHHHHHCCCEEEEe-CcEE------CCCCcEEEECHHHHHHHHHHHcCC
Confidence 112111111 556778887 5554 3331 12455666 888888888877764
No 201
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=69.56 E-value=62 Score=28.34 Aligned_cols=61 Identities=16% Similarity=0.062 Sum_probs=36.5
Q ss_pred hcCEE-EecCCCCcchhHHHHHHHcCCeEEecCCCcccccccCCCEEEeCCHHHHHHHHHHHHh
Q 016975 213 DYKVF-LNPSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALA 275 (379)
Q Consensus 213 ~~dv~-v~ps~~E~~~~~~~EAma~G~PVI~t~~g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~ 275 (379)
.+|.+ +.|...+...-.+-++...|+|||..+.+ +.........+-.|..+....+.+.+.
T Consensus 55 ~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~--~~~~~~~~~~v~~d~~~~G~~~a~~l~ 116 (257)
T PF13407_consen 55 GVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSD--EAPDSPRAAYVGTDNYEAGKLAAEYLA 116 (257)
T ss_dssp TESEEEEESSSTTTTHHHHHHHHHTTSEEEEESST--HHTTSTSSEEEEE-HHHHHHHHHHHHH
T ss_pred cCCEEEecCCCHHHHHHHHHHHhhcCceEEEEecc--ccccccceeeeeccHHHHHHHHHHHHH
Confidence 34654 56666677777788899999999998887 222222333443455555444444433
No 202
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=68.77 E-value=44 Score=27.31 Aligned_cols=127 Identities=17% Similarity=0.104 Sum_probs=76.0
Q ss_pred CCcEEEEEcCCc-ChHHHHHHHHhcCCeeEEecCCCCHHHHHhhc---CEEEecCCCCcchhHHHHHHHcCC----eEEe
Q 016975 171 AGLEVDLYGNGE-DFNQIQEAAEKLKIVVRVYPGRDHADLIFHDY---KVFLNPSTTDVVCTTTAEALAMGK----IVVC 242 (379)
Q Consensus 171 ~~~~l~i~G~g~-~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~---dv~v~ps~~E~~~~~~~EAma~G~----PVI~ 242 (379)
|+-.++++-|.. ....+.+.....|..+..-..+.+.-...+.. -.+|-.-...+.|+.++|++..-. -||.
T Consensus 8 pd~~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~~PayAvvDlkL~~gsGL~~i~~lr~~~~d~rivvL 87 (182)
T COG4567 8 PDKSLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTAPPAYAVVDLKLGDGSGLAVIEALRERRADMRIVVL 87 (182)
T ss_pred CCceeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhcCCCceEEEEeeecCCCchHHHHHHHhcCCcceEEEE
Confidence 444677776543 35566666777777766655443333333333 333444455799999999997654 4777
Q ss_pred cCCCc----ccccccCCCEEEeC--CHHHHHHHHHHHHhCCCC-----CCcHHHHhcCCHHHHHHHHHH
Q 016975 243 ANHPS----NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA-----LPTEAQRHQLSWESATERFLQ 300 (379)
Q Consensus 243 t~~g~----~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~~-----~~~~~~~~~~sw~~~~~~~~~ 300 (379)
|..++ .+-++-+-.-++.. |.+++..++.+--.+... +++. .+..||.+-+-|.+
T Consensus 88 TGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~~~~d~~~~~~~~pmS~---~rl~WEhIqrvl~e 153 (182)
T COG4567 88 TGYASIATAVEAVKLGACDYLAKPADADDILAALLRREPDEDTAPPENPMSA---DRLRWEHIQRVLEE 153 (182)
T ss_pred ecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhhcCCCcccCCCCCCCch---hHhhHHHHHHHHHH
Confidence 77755 33444443335555 999999888775333222 3332 46889977555443
No 203
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=68.18 E-value=29 Score=30.19 Aligned_cols=30 Identities=10% Similarity=0.029 Sum_probs=24.0
Q ss_pred CEEEecCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 215 KVFLNPSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 215 dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
|++|.-...|.. .+++||.-+++|+|+--.
T Consensus 175 D~vvvln~~e~~-sAilEA~K~~IPTIgIVD 204 (251)
T KOG0832|consen 175 DLVVVLNPEENH-SAILEAAKMAIPTIGIVD 204 (251)
T ss_pred ceeEecCccccc-HHHHHHHHhCCCeEEEec
Confidence 777777666664 479999999999998655
No 204
>PLN03015 UDP-glucosyl transferase
Probab=67.64 E-value=1.1e+02 Score=30.24 Aligned_cols=74 Identities=14% Similarity=0.034 Sum_probs=48.0
Q ss_pred EEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCC-Cc----cccc-ccCCCEEEe-------C-CHH
Q 016975 199 RVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH-PS----NDFF-KQFPNCRTY-------D-DRN 264 (379)
Q Consensus 199 ~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~-g~----~e~i-~~~~~g~~~-------~-~~~ 264 (379)
.+.++.++.+ ++....+..+-+. +--++++||+++|+|+|+-.. +. ...+ .....|+-. . +.+
T Consensus 338 ~v~~W~PQ~~-vL~h~~vg~fvtH--~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e 414 (470)
T PLN03015 338 VVTQWAPQVE-ILSHRSIGGFLSH--CGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVIGRE 414 (470)
T ss_pred EEEecCCHHH-HhccCccCeEEec--CCchhHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEecccccCCccCHH
Confidence 4558888777 5555544333332 223479999999999999887 33 1123 333455443 1 678
Q ss_pred HHHHHHHHHHh
Q 016975 265 GFVEATLKALA 275 (379)
Q Consensus 265 ~l~~~i~~~l~ 275 (379)
++.+++.+++.
T Consensus 415 ~i~~~v~~lm~ 425 (470)
T PLN03015 415 EVASLVRKIVA 425 (470)
T ss_pred HHHHHHHHHHc
Confidence 99999999886
No 205
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=67.29 E-value=37 Score=26.72 Aligned_cols=66 Identities=14% Similarity=0.072 Sum_probs=37.5
Q ss_pred HHHhhcCEEEecC--CCCcch--hHHHHHHHcCCeEEecCCCc-ccccccC--CCEEEeCCHHHHHHHHHHHH
Q 016975 209 LIFHDYKVFLNPS--TTDVVC--TTTAEALAMGKIVVCANHPS-NDFFKQF--PNCRTYDDRNGFVEATLKAL 274 (379)
Q Consensus 209 ~~~~~~dv~v~ps--~~E~~~--~~~~EAma~G~PVI~t~~g~-~e~i~~~--~~g~~~~~~~~l~~~i~~~l 274 (379)
.++..||++|.-- .+--+. +-.--|.|.|+|.|.-.... .--++.- ..-..+.++++..+.|..++
T Consensus 68 ~li~~aDvVVvrFGekYKQWNaAfDAg~a~AlgKplI~lh~~~~~HpLKEvda~A~a~~et~~Qvv~iL~Yv~ 140 (141)
T PF11071_consen 68 TLIEKADVVVVRFGEKYKQWNAAFDAGYAAALGKPLITLHPEELHHPLKEVDAAALAVAETPEQVVEILRYVL 140 (141)
T ss_pred HHHhhCCEEEEEechHHHHHHHHhhHHHHHHcCCCeEEecchhccccHHHHhHhhHhhhCCHHHHHHHHHHHh
Confidence 6788899988531 111121 11234679999999977633 1111111 11134458888888777654
No 206
>PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E.coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B.
Probab=67.18 E-value=99 Score=28.07 Aligned_cols=129 Identities=20% Similarity=0.192 Sum_probs=68.8
Q ss_pred EEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHH-----------------hcCCeeEEecCCCCH
Q 016975 145 YYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAE-----------------KLKIVVRVYPGRDHA 207 (379)
Q Consensus 145 l~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~-----------------~~~l~v~~~g~~~~~ 207 (379)
+|+||..-.||+..+++.-++.... +++.-++-|-....+.+.-.-+ .-+..+.++|..-.+
T Consensus 187 ~yigR~Tt~kG~~~mfD~h~~~lK~-~~~~t~~~GierS~A~~~i~d~~~~~~y~~~~~~~~~~~~pN~~~~v~~~Yi~~ 265 (355)
T PF11440_consen 187 RYIGRQTTWKGPRRMFDLHEKILKP-AGFKTIMEGIERSPAKISIKDHGIPYEYYPKLDCDEPKPAPNSPVPVYGPYIRS 265 (355)
T ss_dssp EEE--SSGGG-HHHHHHHHHHTTTT-TT-EEEEE---SSTHHHHHHHTT--EEEE-CTGGGG---SSS--EEEESS--HH
T ss_pred eeeeeeeeecCcHHHhhhHHHhcCC-cchhHHhhhhhcCCceeeeecCCcccccCccccccCcccCCCCcceecchhhhH
Confidence 6999999999999999998886554 7898899883222222111100 011235677776666
Q ss_pred H--HHHhhcCEEEecCC------CCcchhHHHHHHHcCC-eEEecCCCc-cc-------ccccCCCEEEeC---CHHHHH
Q 016975 208 D--LIFHDYKVFLNPST------TDVVCTTTAEALAMGK-IVVCANHPS-ND-------FFKQFPNCRTYD---DRNGFV 267 (379)
Q Consensus 208 ~--~~~~~~dv~v~ps~------~E~~~~~~~EAma~G~-PVI~t~~g~-~e-------~i~~~~~g~~~~---~~~~l~ 267 (379)
+ +.|+.+-+...-+. .+..-.+-+|..|||. ||.-+..|- .. .+.. ..|.++- |.++-.
T Consensus 266 E~~~~Maks~Fgy~~~k~~~~y~~r~mEYt~iE~~A~GtIPVF~k~~GEN~r~~~D~~~~~~~-~~~~I~~De~dle~T~ 344 (355)
T PF11440_consen 266 EGLERMAKSLFGYQLSKLQQKYLQRSMEYTQIELIAVGTIPVFDKSWGENNRFTLDGTRYIDH-PYSAIYFDENDLESTV 344 (355)
T ss_dssp HHHHHHHTEEEEEE-----GGG-SS---HHHHHHHHCTSEEEEEHHHHHHSB-TTTSSBGGSS---S-EEE-TTSHHHHH
T ss_pred HHHHHHhhccceeecHHHHHHHHHhhhhhheeeeeeeceeeeeeccccccceeeecCceeecc-CcceeEeccchHHHHH
Confidence 6 77777766554442 2456778999999999 555544454 22 2222 3344433 666666
Q ss_pred HHHHHHHh
Q 016975 268 EATLKALA 275 (379)
Q Consensus 268 ~~i~~~l~ 275 (379)
+.|.++-+
T Consensus 345 ekl~E~a~ 352 (355)
T PF11440_consen 345 EKLIEVAN 352 (355)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 66666544
No 207
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=66.94 E-value=14 Score=29.49 Aligned_cols=90 Identities=16% Similarity=0.218 Sum_probs=54.8
Q ss_pred HHHHHHHHhcCCeeEEecCCCCHH--HHHhhc-----CEEEecCCCCcchhHHHHHH-HcCCeEEecCC---Cccccc--
Q 016975 185 NQIQEAAEKLKIVVRVYPGRDHAD--LIFHDY-----KVFLNPSTTDVVCTTTAEAL-AMGKIVVCANH---PSNDFF-- 251 (379)
Q Consensus 185 ~~l~~~~~~~~l~v~~~g~~~~~~--~~~~~~-----dv~v~ps~~E~~~~~~~EAm-a~G~PVI~t~~---g~~e~i-- 251 (379)
+.+++.+++++..+.|+-.=..-+ +.++.+ .+.+||.-+--++.++.+|+ +.++|+|=-.. -.+|.+
T Consensus 31 ~~~~~~a~~~g~~v~~~QSN~EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~~~~P~vEVHiSNi~aRE~fR~ 110 (141)
T TIGR01088 31 EIIETFAAQLNVELEFFQSNSEGQLIDKIHEAEGQYDGIIINPGALTHTSVALRDALAAVSLPVVEVHLSNVHAREEFRH 110 (141)
T ss_pred HHHHHHHHHcCCEEEEEeeCcHHHHHHHHHhccccCCEEEEcChHHhhhHHHHHHHHHcCCCCEEEEEcCCccccccccc
Confidence 345555666777777763222222 555555 37889988888899999997 57899986544 235533
Q ss_pred ----ccCCCEEEeC-CHHHHHHHHHHHH
Q 016975 252 ----KQFPNCRTYD-DRNGFVEATLKAL 274 (379)
Q Consensus 252 ----~~~~~g~~~~-~~~~l~~~i~~~l 274 (379)
.+--.|.+.- -.+...-++..++
T Consensus 111 ~S~is~~~~G~I~G~G~~gY~lAl~a~~ 138 (141)
T TIGR01088 111 HSYTAPVAGGVIVGLGAQGYLLALRYLV 138 (141)
T ss_pred cccccccceEEEeecCHHHHHHHHHHHH
Confidence 3334455544 5555555555543
No 208
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=66.89 E-value=14 Score=29.72 Aligned_cols=89 Identities=13% Similarity=0.205 Sum_probs=53.7
Q ss_pred HHHHHHHhcCCeeEEecCCCCHH--HHHhhc-----CEEEecCCCCcchhHHHHHH-HcCCeEEecCC---Ccccc----
Q 016975 186 QIQEAAEKLKIVVRVYPGRDHAD--LIFHDY-----KVFLNPSTTDVVCTTTAEAL-AMGKIVVCANH---PSNDF---- 250 (379)
Q Consensus 186 ~l~~~~~~~~l~v~~~g~~~~~~--~~~~~~-----dv~v~ps~~E~~~~~~~EAm-a~G~PVI~t~~---g~~e~---- 250 (379)
.+++.+++++..+.|+-.=..-+ +.++.+ .+.+||.-+--++.++.+|+ +.++|+|=-.. -.+|.
T Consensus 34 ~~~~~a~~~g~~v~~~QSN~EGelId~I~~a~~~~dgiiINpga~THtSiAl~DAl~~~~~P~VEVHiSNi~aRE~fR~~ 113 (146)
T PRK05395 34 LLEEEAAELGVELEFFQSNHEGELIDRIHEARDGADGIIINPGAYTHTSVALRDALAAVSIPVIEVHLSNIHAREEFRHH 113 (146)
T ss_pred HHHHHHHHcCCEEEEEeeCcHHHHHHHHHhcccCCcEEEECchHHHHHHHHHHHHHHcCCCCEEEEecCCcccccccccc
Confidence 34555666677777663222222 555555 37889988888899999997 57899986544 23443
Q ss_pred --cccCCCEEEeC-CHHHHHHHHHHHH
Q 016975 251 --FKQFPNCRTYD-DRNGFVEATLKAL 274 (379)
Q Consensus 251 --i~~~~~g~~~~-~~~~l~~~i~~~l 274 (379)
+.+--.|.+.- -.+...-++..++
T Consensus 114 S~is~~a~G~I~G~G~~gY~lAl~al~ 140 (146)
T PRK05395 114 SYISDVAVGVICGFGADGYLLALEALA 140 (146)
T ss_pred ccccccceEEEeeCCHHhHHHHHHHHH
Confidence 33334455544 5555555555544
No 209
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=66.75 E-value=14 Score=29.76 Aligned_cols=89 Identities=16% Similarity=0.214 Sum_probs=53.6
Q ss_pred HHHHHHHhcCCeeEEecCCCCHH--HHHhhc-----CEEEecCCCCcchhHHHHHH-HcCCeEEecCC---Cccc-----
Q 016975 186 QIQEAAEKLKIVVRVYPGRDHAD--LIFHDY-----KVFLNPSTTDVVCTTTAEAL-AMGKIVVCANH---PSND----- 249 (379)
Q Consensus 186 ~l~~~~~~~~l~v~~~g~~~~~~--~~~~~~-----dv~v~ps~~E~~~~~~~EAm-a~G~PVI~t~~---g~~e----- 249 (379)
.+++.+++++..+.|+-.=..-+ +.++.+ .+.+||.-+--++.++.+|+ +.++|+|=-.. -.+|
T Consensus 34 ~~~~~a~~~g~~~~~~QSN~EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~~~~P~VEVHiSNi~aRE~fR~~ 113 (146)
T PRK13015 34 LCRAAAEALGLEVEFRQSNHEGELIDWIHEARGDVAGIVINPGAYTHTSVAIRDALAALELPVIEVHISNVHAREAFRHH 113 (146)
T ss_pred HHHHHHHHcCCEEEEEeeCcHHHHHHHHHHhhhcCCEEEEcchHHhhhHHHHHHHHHcCCCCEEEEEcCCcccccccccc
Confidence 34555666677776663222222 444433 47889988878899999997 57899986544 2355
Q ss_pred -ccccCCCEEEeC-CHHHHHHHHHHHH
Q 016975 250 -FFKQFPNCRTYD-DRNGFVEATLKAL 274 (379)
Q Consensus 250 -~i~~~~~g~~~~-~~~~l~~~i~~~l 274 (379)
++.+--.|.+.- =++...-++..++
T Consensus 114 S~is~~~~G~I~G~G~~gY~lAl~al~ 140 (146)
T PRK13015 114 SYVSAIADGVICGLGTEGYRLALRRLA 140 (146)
T ss_pred ccccCceeEEEeeCCHHHHHHHHHHHH
Confidence 333444555555 5566666665554
No 210
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=66.71 E-value=16 Score=27.14 Aligned_cols=70 Identities=17% Similarity=0.144 Sum_probs=45.4
Q ss_pred EEEEcCCcC----hHHHHHHHHhcCCeeEEe-cCCCCHHHHHhhcCEEEecCCCCcchhHHHH--HHHcCCeEEecCC
Q 016975 175 VDLYGNGED----FNQIQEAAEKLKIVVRVY-PGRDHADLIFHDYKVFLNPSTTDVVCTTTAE--ALAMGKIVVCANH 245 (379)
Q Consensus 175 l~i~G~g~~----~~~l~~~~~~~~l~v~~~-g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~E--Ama~G~PVI~t~~ 245 (379)
++++|.|-. .+.+++.+++.++++.+. ..+...++.+..+|+++...... +-..-++ +.-.++||..-+.
T Consensus 3 l~~Cg~G~sTS~~~~ki~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~Pqv~-~~~~~i~~~~~~~~~pv~~I~~ 79 (96)
T cd05564 3 LLVCSAGMSTSILVKKMKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLGPQVR-YMLDEVKKKAAEYGIPVAVIDM 79 (96)
T ss_pred EEEcCCCchHHHHHHHHHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEEChhHH-HHHHHHHHHhccCCCcEEEcCh
Confidence 678887776 345777788888876665 44444446678889887765432 2233333 4457899988665
No 211
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=66.67 E-value=58 Score=27.72 Aligned_cols=73 Identities=16% Similarity=0.134 Sum_probs=43.4
Q ss_pred CcEEEEEcCCcChHH-HHHHHHhcCC---eeEEecC-CCCHHHH-------------------------HhhcCEEEecC
Q 016975 172 GLEVDLYGNGEDFNQ-IQEAAEKLKI---VVRVYPG-RDHADLI-------------------------FHDYKVFLNPS 221 (379)
Q Consensus 172 ~~~l~i~G~g~~~~~-l~~~~~~~~l---~v~~~g~-~~~~~~~-------------------------~~~~dv~v~ps 221 (379)
+-+++++|..+.... +++.++..+. +-++.|+ +...... ...=|++|...
T Consensus 56 ~g~iLfV~t~~~~~~~v~~~a~~~~~~~i~~rw~~G~LTN~~~~~~~~~~~~~~~~~~~~k~~~g~~~~~~~Pdlviv~~ 135 (193)
T cd01425 56 GGKILFVGTKPQAQRAVKKFAERTGSFYVNGRWLGGTLTNWKTIRKSIKRLKKLEKEKLEKNLGGIKDMFRLPDLVIVLD 135 (193)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCeeecCeecCCcCCCHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCEEEEeC
Confidence 456777787665333 4444444443 2356644 3443321 12237776665
Q ss_pred CCCcchhHHHHHHHcCCeEEecCC
Q 016975 222 TTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 222 ~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
..+. ..++.||..+|+|+|+--.
T Consensus 136 ~~~~-~~ai~Ea~~l~IP~I~i~D 158 (193)
T cd01425 136 PRKE-HQAIREASKLGIPVIAIVD 158 (193)
T ss_pred Cccc-hHHHHHHHHcCCCEEEEec
Confidence 4332 6789999999999999766
No 212
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=66.41 E-value=15 Score=36.04 Aligned_cols=67 Identities=13% Similarity=0.030 Sum_probs=48.1
Q ss_pred HHHhhcCEEEecCCCCcchhHHHHHHHcCC-eEEecCC--CcccccccC-CCEEEeCCHHHHHHHHHHHHhC
Q 016975 209 LIFHDYKVFLNPSTTDVVCTTTAEALAMGK-IVVCANH--PSNDFFKQF-PNCRTYDDRNGFVEATLKALAE 276 (379)
Q Consensus 209 ~~~~~~dv~v~ps~~E~~~~~~~EAma~G~-PVI~t~~--g~~e~i~~~-~~g~~~~~~~~l~~~i~~~l~~ 276 (379)
+.++.+.+++.|.-.+...-.++||+..|| |||.++. .+-+.+.+. .-++.++ .+++-+.|.+.|..
T Consensus 339 ~~m~~S~FCL~p~Gd~~ts~R~fdai~~gCvPViisd~~~lpf~~~~d~~~fSV~v~-~~~v~~~~~~iL~~ 409 (464)
T KOG1021|consen 339 EGMQDSKFCLCPPGDTPTSPRLFDAIVSGCVPVIISDGIQLPFGDVLDWTEFSVFVP-EKDVPELIKNILLS 409 (464)
T ss_pred HHhhcCeEEECCCCCCcccHhHHHHHHhCCccEEEcCCcccCcCCCccceEEEEEEE-HHHhhhHHHHHHHh
Confidence 899999999999998888889999999999 9999998 443333333 4445555 44444444555443
No 213
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=65.09 E-value=98 Score=27.24 Aligned_cols=43 Identities=12% Similarity=-0.164 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcCCcccceeecccCCCCCchHHHHHHhCCCCC-CC
Q 016975 333 EASAYVHFLASGFETSRRAFGAIPGSLHPDEELCKELGLVTP-MS 376 (379)
Q Consensus 333 ~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~ 376 (379)
.+...+..++...+....+++.....-...-+.+++.|+. | |+
T Consensus 169 ~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~-~~di 212 (272)
T cd06301 169 EAMDLMENWLSSGGKIDAVVANNDEMALGAIMALKAAGKS-DKDV 212 (272)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCchHHHHHHHHHHcCCC-CCCc
Confidence 3444555555555545677776665556778999999998 6 54
No 214
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=64.33 E-value=1.1e+02 Score=27.58 Aligned_cols=189 Identities=14% Similarity=0.050 Sum_probs=94.4
Q ss_pred HHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHH
Q 016975 156 YKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALA 235 (379)
Q Consensus 156 ~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma 235 (379)
+..++..+.+..++ .++.++++-.+.+.+.- +..+. -.-+..|-+|+.+..... -.+.....
T Consensus 16 f~~ii~gIe~~a~~-~Gy~l~l~~t~~~~~~e-~~i~~---------------l~~~~vDGiI~~s~~~~~-~~l~~~~~ 77 (279)
T PF00532_consen 16 FAEIIRGIEQEARE-HGYQLLLCNTGDDEEKE-EYIEL---------------LLQRRVDGIILASSENDD-EELRRLIK 77 (279)
T ss_dssp HHHHHHHHHHHHHH-TTCEEEEEEETTTHHHH-HHHHH---------------HHHTTSSEEEEESSSCTC-HHHHHHHH
T ss_pred HHHHHHHHHHHHHH-cCCEEEEecCCCchHHH-HHHHH---------------HHhcCCCEEEEecccCCh-HHHHHHHH
Confidence 44555555555443 25666665554442222 32221 111344667766655442 23444555
Q ss_pred cCCeEEecCCCcccccccCCCEEEeCCHHHHHHHHHHHHhCCCCC-CcHHHHhcCCHHHHHHH---HHHHHhcccccccC
Q 016975 236 MGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEEPAL-PTEAQRHQLSWESATER---FLQVAELDQAVVKK 311 (379)
Q Consensus 236 ~G~PVI~t~~g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~~~~~~-~~~~~~~~~sw~~~~~~---~~~~~~~~~~~~~~ 311 (379)
.|.|||..+...... ..-.++..+|.+....+...+++..-++ +.--.. .-+.....+| |.++++..-- +.
T Consensus 78 ~~iPvV~~~~~~~~~--~~~~~V~~D~~~a~~~a~~~Li~~Gh~~~I~~i~~-~~~~~~~~~R~~Gy~~Al~~~Gl-~~- 152 (279)
T PF00532_consen 78 SGIPVVLIDRYIDNP--EGVPSVYIDNYEAGYEATEYLIKKGHRRPIAFIGG-PEDSSTSRERLQGYRDALKEAGL-PI- 152 (279)
T ss_dssp TTSEEEEESS-SCTT--CTSCEEEEEHHHHHHHHHHHHHHTTCCSTEEEEEE-STTTHHHHHHHHHHHHHHHHTTS-CE-
T ss_pred cCCCEEEEEeccCCc--ccCCEEEEcchHHHHHHHHHHHhcccCCeEEEEec-CcchHHHHHHHHHHHHHHHHcCC-CC-
Confidence 599999998843111 2235677778888888889988865554 322111 1111222333 2333332210 00
Q ss_pred CCCCCCccccccchhHHHhHHHHHHHHHHHhcCCcccceeecccCCCCCchHHHHHHhC-CCCCC
Q 016975 312 PSKSPSKHFASTSLNLKKNMEEASAYVHFLASGFETSRRAFGAIPGSLHPDEELCKELG-LVTPM 375 (379)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~ 375 (379)
. ......-......|-..+..++...+....+|+...-...-..+.+++.| +..|+
T Consensus 153 ------~--~~~i~~~~~~~~~g~~~~~~ll~~~p~idai~~~nd~~A~ga~~~l~~~gr~~ip~ 209 (279)
T PF00532_consen 153 ------D--EEWIFEGDFDYESGYEAARELLESHPDIDAIFCANDMMAIGAIRALRERGRLKIPE 209 (279)
T ss_dssp ------E--EEEEEESSSSHHHHHHHHHHHHHTSTT-SEEEESSHHHHHHHHHHHHHTT-TCTTT
T ss_pred ------C--cccccccCCCHHHHHHHHHHHHhhCCCCEEEEEeCHHHHHHHHHHHHHcCCcccCh
Confidence 0 00000111223456666666666666555666554444445567788888 77664
No 215
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=64.18 E-value=41 Score=32.02 Aligned_cols=117 Identities=16% Similarity=0.125 Sum_probs=66.9
Q ss_pred cccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhh--cCEEEecCCCCcchhH
Q 016975 152 WSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPSTTDVVCTT 229 (379)
Q Consensus 152 ~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~--~dv~v~ps~~E~~~~~ 229 (379)
..+|++.+.+...++ . .+++++++.....+++..... ..++++.+.+...++... +|++|+..-...---.
T Consensus 35 a~~n~~~l~~q~~~f---~--p~~v~i~~~~~~~~l~~~l~~--~~~~v~~G~~~~~~l~~~~~vD~Vv~Ai~G~aGl~p 107 (385)
T PRK05447 35 AGKNVELLAEQAREF---R--PKYVVVADEEAAKELKEALAA--AGIEVLAGEEGLCELAALPEADVVVAAIVGAAGLLP 107 (385)
T ss_pred cCCCHHHHHHHHHHh---C--CCEEEEcCHHHHHHHHHhhcc--CCceEEEChhHHHHHhcCCCCCEEEEeCcCcccHHH
Confidence 367777777766554 2 356666766555556553322 134455444444466664 4888887654322356
Q ss_pred HHHHHHcCCeEEecCC-----Ccccccc--cCCCEEEeC-CHHHHHHHHHHHHhCC
Q 016975 230 TAEALAMGKIVVCANH-----PSNDFFK--QFPNCRTYD-DRNGFVEATLKALAEE 277 (379)
Q Consensus 230 ~~EAma~G~PVI~t~~-----g~~e~i~--~~~~g~~~~-~~~~l~~~i~~~l~~~ 277 (379)
+++|+.+|++|.+.+- ++..+.. ...++-+.+ |++- .+|-+++...
T Consensus 108 tl~Ai~aGK~VaLANKEslV~aG~~i~~~a~~~g~~i~PVDSEh--~ai~q~l~~~ 161 (385)
T PRK05447 108 TLAAIRAGKRIALANKESLVCAGELVMDAAKKSGAQILPVDSEH--SAIFQCLPGE 161 (385)
T ss_pred HHHHHHCCCcEEEeCHHHHHhhHHHHHHHHHHcCCeEEEECHHH--HHHHHHhcCC
Confidence 8999999999999774 3333322 112345555 5553 3444445443
No 216
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=64.16 E-value=29 Score=30.85 Aligned_cols=94 Identities=12% Similarity=0.019 Sum_probs=55.1
Q ss_pred ccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcC-hHHHHHHHHhcCC---eeEEecCC-CCHH-HHHhhcCEEEecCCCC
Q 016975 151 VWSKGYKELLELLDDHQKELAGLEVDLYGNGED-FNQIQEAAEKLKI---VVRVYPGR-DHAD-LIFHDYKVFLNPSTTD 224 (379)
Q Consensus 151 ~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~l---~v~~~g~~-~~~~-~~~~~~dv~v~ps~~E 224 (379)
+-.|=++.|..|+.-+..-...-.++++|..+. ...+++.+...+. .-+|+|+. .+.. ..+..=|++|.....
T Consensus 50 dL~kT~~~L~~Aa~~i~~i~~~~~Il~Vstr~~~~~~V~k~A~~tg~~~i~~Rw~pGtlTN~~~~~f~~P~llIV~Dp~- 128 (249)
T PTZ00254 50 NLAKTWEKLKLAARVIAAIENPADVVVVSSRPYGQRAVLKFAQYTGASAIAGRFTPGTFTNQIQKKFMEPRLLIVTDPR- 128 (249)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCHHHHHHHHHHHHHhCCeEECCcccCCCCCCccccccCCCCEEEEeCCC-
Confidence 344555666666655543212345778888776 4456666666654 23677553 3322 333344666654322
Q ss_pred cchhHHHHHHHcCCeEEecCC
Q 016975 225 VVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 225 ~~~~~~~EAma~G~PVI~t~~ 245 (379)
.=-.++.||..+|+|||+--.
T Consensus 129 ~d~qAI~EA~~lnIPvIal~D 149 (249)
T PTZ00254 129 TDHQAIREASYVNIPVIALCD 149 (249)
T ss_pred cchHHHHHHHHhCCCEEEEec
Confidence 223579999999999999655
No 217
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=62.67 E-value=61 Score=29.91 Aligned_cols=89 Identities=16% Similarity=0.213 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhHhhcCCcEE--EEEcCCcC-----hHHHHHHHHhcCCeeEEec--CCCCHH----HHHhhcCEEEecCC
Q 016975 156 YKELLELLDDHQKELAGLEV--DLYGNGED-----FNQIQEAAEKLKIVVRVYP--GRDHAD----LIFHDYKVFLNPST 222 (379)
Q Consensus 156 ~~~li~a~~~l~~~~~~~~l--~i~G~g~~-----~~~l~~~~~~~~l~v~~~g--~~~~~~----~~~~~~dv~v~ps~ 222 (379)
++.-+++++.+ .|+++= ++++.++. .+++++.+++.|+.+.-.+ ...+.. .+....|++..|..
T Consensus 145 v~q~i~lik~~---~Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~vve~~v~~~ndi~~a~~~l~g~~d~i~~p~d 221 (322)
T COG2984 145 VAQQIELIKAL---LPNAKSIGVLYNPGEANSVSLVEELKKEARKAGLEVVEAAVTSVNDIPRAVQALLGKVDVIYIPTD 221 (322)
T ss_pred HHHHHHHHHHh---CCCCeeEEEEeCCCCcccHHHHHHHHHHHHHCCCEEEEEecCcccccHHHHHHhcCCCcEEEEecc
Confidence 33344444443 566543 46777664 5778888999999775543 333333 45566799888864
Q ss_pred C---CcchhHHHHHHHcCCeEEecCCCc
Q 016975 223 T---DVVCTTTAEALAMGKIVVCANHPS 247 (379)
Q Consensus 223 ~---E~~~~~~~EAma~G~PVI~t~~g~ 247 (379)
. -++...+.+|...++|+++++.+.
T Consensus 222 n~i~s~~~~l~~~a~~~kiPli~sd~~~ 249 (322)
T COG2984 222 NLIVSAIESLLQVANKAKIPLIASDTSS 249 (322)
T ss_pred hHHHHHHHHHHHHHHHhCCCeecCCHHH
Confidence 3 345566889999999999998743
No 218
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=62.39 E-value=7.1 Score=34.72 Aligned_cols=13 Identities=31% Similarity=0.445 Sum_probs=10.9
Q ss_pred hcceEEEcChhhh
Q 016975 93 YCHKVIRLSAATQ 105 (379)
Q Consensus 93 ~~d~vi~~S~~~~ 105 (379)
+||.|.+||+..+
T Consensus 215 ~AD~v~TVS~~Ya 227 (245)
T PF08323_consen 215 YADKVTTVSPTYA 227 (245)
T ss_dssp HSSEEEESSHHHH
T ss_pred hcCEeeeCCHHHH
Confidence 4799999998765
No 219
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=61.12 E-value=48 Score=23.92 Aligned_cols=79 Identities=16% Similarity=0.092 Sum_probs=43.7
Q ss_pred cceEEEEEecccccCHHHHHHHHHHhHhhcC---CcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHH-HHHhhcCE
Q 016975 141 AKGAYYIGKMVWSKGYKELLELLDDHQKELA---GLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD-LIFHDYKV 216 (379)
Q Consensus 141 ~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~---~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~-~~~~~~dv 216 (379)
++++++...-. -......+..+.++.++++ ++.++.+...++.++.++..++.+..-..+..-.... .+.+..++
T Consensus 2 K~~ll~fwa~~-c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 2 KPVLLYFWASW-CPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp SEEEEEEE-TT-SHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CEEEEEEECCC-CHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 44555555431 2224445555555555555 8999999887888888888888754333332222222 66666655
Q ss_pred EEec
Q 016975 217 FLNP 220 (379)
Q Consensus 217 ~v~p 220 (379)
--.|
T Consensus 81 ~~iP 84 (95)
T PF13905_consen 81 NGIP 84 (95)
T ss_dssp TSSS
T ss_pred CcCC
Confidence 4444
No 220
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=60.88 E-value=71 Score=24.22 Aligned_cols=70 Identities=19% Similarity=0.161 Sum_probs=48.7
Q ss_pred cCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHh--hcCEEEecCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 170 LAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 170 ~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~--~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
.++++++-+ ..++.+..++..++.+.. ...+.++++. ..|+.+..+....-.-.+.+++..|++|++-..
T Consensus 23 ~~~~~v~~v-~d~~~~~~~~~~~~~~~~-----~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~~v~~EKP 94 (120)
T PF01408_consen 23 SPDFEVVAV-CDPDPERAEAFAEKYGIP-----VYTDLEELLADEDVDAVIIATPPSSHAEIAKKALEAGKHVLVEKP 94 (120)
T ss_dssp TTTEEEEEE-ECSSHHHHHHHHHHTTSE-----EESSHHHHHHHTTESEEEEESSGGGHHHHHHHHHHTTSEEEEESS
T ss_pred CCCcEEEEE-EeCCHHHHHHHHHHhccc-----chhHHHHHHHhhcCCEEEEecCCcchHHHHHHHHHcCCEEEEEcC
Confidence 355644422 334555666667777755 2344667777 569988888777777789999999999999776
No 221
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=60.23 E-value=20 Score=28.67 Aligned_cols=90 Identities=14% Similarity=0.187 Sum_probs=54.8
Q ss_pred HHHHHHHHhcCCeeEEecCCCCHH--HHHhhc-----CEEEecCCCCcchhHHHHHH-HcCCeEEecCC---Ccccc---
Q 016975 185 NQIQEAAEKLKIVVRVYPGRDHAD--LIFHDY-----KVFLNPSTTDVVCTTTAEAL-AMGKIVVCANH---PSNDF--- 250 (379)
Q Consensus 185 ~~l~~~~~~~~l~v~~~g~~~~~~--~~~~~~-----dv~v~ps~~E~~~~~~~EAm-a~G~PVI~t~~---g~~e~--- 250 (379)
..+++.+++++..+.|+-.=...+ +.++.+ .+.+||.-+--++.++.+|+ +.++|+|=-.. -.+|.
T Consensus 31 ~~l~~~a~~~g~~v~~~QSN~Egelid~I~~a~~~~dgiIINpga~THtSvAi~DAl~~~~~P~VEVHiSNi~aRE~fR~ 110 (140)
T cd00466 31 ALLRELAAELGVEVEFFQSNHEGELIDWIHEARDGADGIIINPGAYTHTSIALRDALAAVSIPVIEVHISNIHAREEFRH 110 (140)
T ss_pred HHHHHHHHHcCCEEEEEeeCcHHHHHHHHHHhhccCcEEEEcchHHHHHHHHHHHHHHcCCCCEEEEecCCccccccccc
Confidence 345555666777777763222222 455444 37789988777899999997 57889986554 22443
Q ss_pred ---cccCCCEEEeC-CHHHHHHHHHHHH
Q 016975 251 ---FKQFPNCRTYD-DRNGFVEATLKAL 274 (379)
Q Consensus 251 ---i~~~~~g~~~~-~~~~l~~~i~~~l 274 (379)
+.+--.|.+.- =.+...-++..++
T Consensus 111 ~S~is~~~~G~I~G~G~~gY~lAl~~~~ 138 (140)
T cd00466 111 HSVISPVATGVIAGLGADGYRLALEALA 138 (140)
T ss_pred ccccccceeEEEEeCCHHHHHHHHHHHH
Confidence 33334455554 5666666666554
No 222
>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=59.18 E-value=59 Score=29.82 Aligned_cols=64 Identities=8% Similarity=0.036 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecC-CCCHH-HHHhhcCEEEecC
Q 016975 156 YKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPG-RDHAD-LIFHDYKVFLNPS 221 (379)
Q Consensus 156 ~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~-~~~~~-~~~~~~dv~v~ps 221 (379)
.+...+|+..+.++.++..++|.+|.. +.+++........+.+.+. -+..+ .+|+.||.+|.+.
T Consensus 190 ~~Yy~~Ai~~i~~~~~~~~f~ifSDD~--~w~k~~l~~~~~~~~~~~~~~~~~Dl~lms~C~~~Iisn 255 (298)
T PF01531_consen 190 KDYYKKAIEYIREKVKNPKFFIFSDDI--EWCKENLKFSNGDVYFSGNNSPYEDLYLMSQCKHFIISN 255 (298)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCCH--HHHHHHHhhcCCcEEEECCCCHHHHHHHHHhCCcEEECC
Confidence 567889999999888899999999754 4444444433334455555 23333 8899999999884
No 223
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=58.56 E-value=3.3 Score=36.89 Aligned_cols=44 Identities=27% Similarity=0.201 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCcccceeecccCC-CCCchHHHHHHhCCCCCCC
Q 016975 333 EASAYVHFLASGFETSRRAFGAIPG-SLHPDEELCKELGLVTPMS 376 (379)
Q Consensus 333 ~~l~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~ 376 (379)
.+++.+..++.....-+..|+..|| ++....+++++.++|.||+
T Consensus 19 ~~~~~l~~~l~~~~~~~~~~v~~TGRs~~~~~~~~~~~~l~~Pd~ 63 (247)
T PF05116_consen 19 EALARLEELLEQQARPEILFVYVTGRSLESVLRLLREYNLPQPDY 63 (247)
T ss_dssp HHHHHHHHHHHHHHCCGEEEEEE-SS-HHHHHHHHHHCT-EE-SE
T ss_pred HHHHHHHHHHHHhhCCCceEEEECCCCHHHHHHHHHhCCCCCCCE
Confidence 3444444444411124799999999 9999999999999999985
No 224
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=58.16 E-value=80 Score=27.14 Aligned_cols=38 Identities=26% Similarity=0.396 Sum_probs=24.3
Q ss_pred ceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcC
Q 016975 142 KGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED 183 (379)
Q Consensus 142 ~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~ 183 (379)
..++-+|++.-. .+++.+..=+..++++.+.++|+|..
T Consensus 5 ig~ik~GniGts----~v~dlllDErAdRedi~vrVvgsgaK 42 (277)
T COG1927 5 IGFIKCGNIGTS----PVVDLLLDERADREDIEVRVVGSGAK 42 (277)
T ss_pred EEEEEecccchH----HHHHHHHHhhcccCCceEEEeccccc
Confidence 346667777544 44444433334468999999998765
No 225
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=58.06 E-value=1.3e+02 Score=26.28 Aligned_cols=149 Identities=11% Similarity=-0.069 Sum_probs=68.3
Q ss_pred hcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCcccccccCCCEEEeCCHHHHHHHHHHHHhCCCCCCcH-HHHhcCCH
Q 016975 213 DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEEPALPTE-AQRHQLSW 291 (379)
Q Consensus 213 ~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~~~~~~~~~-~~~~~~sw 291 (379)
.+|.+|..+.... .-.+.++...|+|||+.+....+ .....+..++.+....+...+++....+..- ......+.
T Consensus 59 ~vdgiii~~~~~~-~~~~~~~~~~~ipvV~~~~~~~~---~~~~~V~~d~~~~~~~a~~~l~~~g~~~i~~i~~~~~~~~ 134 (268)
T cd06271 59 LVDGVIISRTRPD-DPRVALLLERGFPFVTHGRTELG---DPHPWVDFDNEAAAYQAVRRLIALGHRRIALLNPPEDLTF 134 (268)
T ss_pred CCCEEEEecCCCC-ChHHHHHHhcCCCEEEECCcCCC---CCCCeEeeCcHHHHHHHHHHHHHcCCCcEEEecCccccch
Confidence 3576665443322 12345566789999998653221 1122344556777677777776654332111 00011110
Q ss_pred -HHHHHHHHHHHhcccccccCCCCCCCccccccchhHHHhHHHHHHHHHHHhcCCcccceeecccCCCCCchHHHHHHhC
Q 016975 292 -ESATERFLQVAELDQAVVKKPSKSPSKHFASTSLNLKKNMEEASAYVHFLASGFETSRRAFGAIPGSLHPDEELCKELG 370 (379)
Q Consensus 292 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 370 (379)
....+-+.+.++....... .. ...... ...+.+...+..++...+....+++..........+.+++.|
T Consensus 135 ~~~R~~gf~~~~~~~~~~~~------~~--~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g 204 (268)
T cd06271 135 AQHRRAGYRRALAEAGLPLD------PA--LIVSGD--MTEEGGYAAAAELLALPDRPTAIVCSSELMALGVLAALAEAG 204 (268)
T ss_pred HHHHHHHHHHHHHHhCCCCC------Cc--eEEeCC--CChHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHhC
Confidence 1122333333332110000 00 000000 111233344555554444356667665544446778889999
Q ss_pred CCCCC
Q 016975 371 LVTPM 375 (379)
Q Consensus 371 ~~~~~ 375 (379)
+..|+
T Consensus 205 ~~vp~ 209 (268)
T cd06271 205 LRPGR 209 (268)
T ss_pred CCCCc
Confidence 98774
No 226
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=57.37 E-value=1.3e+02 Score=26.30 Aligned_cols=148 Identities=12% Similarity=-0.044 Sum_probs=66.4
Q ss_pred hcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCcccccccCCCEEEeCCHHHHHHHHHHHHhCCCCCCcHH-HH-hcCC
Q 016975 213 DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEEPALPTEA-QR-HQLS 290 (379)
Q Consensus 213 ~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~~~~~~~~~~-~~-~~~s 290 (379)
.+|.++..+....-. .+-++...|.|+|+-+....+. ....+..++.+....+...++......+.-- .. ....
T Consensus 55 ~vdgii~~~~~~~~~-~~~~~~~~~ipvV~~~~~~~~~---~~~~v~~d~~~~~~~~~~~l~~~g~~~i~~i~~~~~~~~ 130 (268)
T cd06270 55 RCDALILHSKALSDD-ELIELAAQVPPLVLINRHIPGL---ADRCIWLDNEQGGYLATEHLIELGHRKIACITGPLTKED 130 (268)
T ss_pred CCCEEEEecCCCCHH-HHHHHhhCCCCEEEEeccCCCC---CCCeEEECcHHHHHHHHHHHHHCCCceEEEEeCCccccc
Confidence 446555433221111 2566677899999987643211 1123445566666666666665533322110 00 1111
Q ss_pred HHHHHHHHHHHHhcccccccCCCCCCCccccccchhHHHhHHHHHHHHHHHhcCCcccceeecccCCCCCchHHHHHHhC
Q 016975 291 WESATERFLQVAELDQAVVKKPSKSPSKHFASTSLNLKKNMEEASAYVHFLASGFETSRRAFGAIPGSLHPDEELCKELG 370 (379)
Q Consensus 291 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 370 (379)
...-.+-+.+.++... ... . .. ...... ...+.+...+..++...+....+|+.......-..+.+++.|
T Consensus 131 ~~~R~~gf~~~~~~~~--~~~--~--~~--~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g 200 (268)
T cd06270 131 ARLRLQGYRDALAEAG--IAL--D--ES--LIIEGD--FTEEGGYAAMQELLARGAPFTAVFCANDEMAAGAISALREHG 200 (268)
T ss_pred HHHHHHHHHHHHHHcC--CCC--C--cc--eEEECC--CCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHcC
Confidence 1111222333333210 000 0 00 000001 011234444455555544456777666555556777888888
Q ss_pred CCCC
Q 016975 371 LVTP 374 (379)
Q Consensus 371 ~~~~ 374 (379)
+..|
T Consensus 201 ~~ip 204 (268)
T cd06270 201 ISVP 204 (268)
T ss_pred CCCC
Confidence 8766
No 227
>COG0757 AroQ 3-dehydroquinate dehydratase II [Amino acid transport and metabolism]
Probab=56.63 E-value=50 Score=26.34 Aligned_cols=89 Identities=17% Similarity=0.248 Sum_probs=53.8
Q ss_pred HHHHHHHHhcCCeeEEecCCCCHH--HHHhhc-----CEEEecCCCCcchhHHHHHH-HcCCeEEecCC---Cccccccc
Q 016975 185 NQIQEAAEKLKIVVRVYPGRDHAD--LIFHDY-----KVFLNPSTTDVVCTTTAEAL-AMGKIVVCANH---PSNDFFKQ 253 (379)
Q Consensus 185 ~~l~~~~~~~~l~v~~~g~~~~~~--~~~~~~-----dv~v~ps~~E~~~~~~~EAm-a~G~PVI~t~~---g~~e~i~~ 253 (379)
+.+++.+.+++..+.|.-.=..-+ ++++.| ++.+||.-+--.+.++.+|+ +..+|+|=-.. -..|.+..
T Consensus 32 ~~~~~~a~~~g~~v~~~QSN~Eg~Lid~Ihea~~~~~~IvINpga~THTSvAlrDAi~av~iP~vEVHlSNihaRE~FRh 111 (146)
T COG0757 32 ADLEEEAAKLGVEVEFRQSNHEGELIDWIHEARGKAGDIVINPGAYTHTSVALRDAIAAVSIPVVEVHLSNIHAREEFRH 111 (146)
T ss_pred HHHHHHHHHcCceEEEEecCchHHHHHHHHHhhccCCeEEEcCccchhhHHHHHHHHHhcCCCEEEEEecCchhcccccc
Confidence 345566667777777663222222 444444 39999999888999999997 56789986544 33554443
Q ss_pred ------CCCEEEeC-CHHHHHHHHHHH
Q 016975 254 ------FPNCRTYD-DRNGFVEATLKA 273 (379)
Q Consensus 254 ------~~~g~~~~-~~~~l~~~i~~~ 273 (379)
--.|.++- -+....-++..+
T Consensus 112 hS~~s~~a~GvI~GlG~~GY~lAl~~l 138 (146)
T COG0757 112 HSYTSPVAKGVICGLGAQGYLLALRAL 138 (146)
T ss_pred cccccchhceeEecCcHHHHHHHHHHH
Confidence 23445554 445544444443
No 228
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=56.39 E-value=1.3e+02 Score=25.89 Aligned_cols=99 Identities=13% Similarity=0.084 Sum_probs=55.0
Q ss_pred cccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHH--HhcCCeeEEecCC-------------------CCHHHH
Q 016975 152 WSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAA--EKLKIVVRVYPGR-------------------DHADLI 210 (379)
Q Consensus 152 ~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~--~~~~l~v~~~g~~-------------------~~~~~~ 210 (379)
..-.+..|++-+..+.......++.|+|.|..-..+.+.. ...+.+ +.|.+ ++.+++
T Consensus 64 ~gy~v~~l~~~~~~~l~~~~~~rV~IIGaG~iG~~l~~~~~~~~~g~~--ivgv~D~d~~~~~~~i~g~~v~~~~~l~~l 141 (213)
T PRK05472 64 VGYNVEELLEFIEKILGLDRTWNVALVGAGNLGRALLNYNGFEKRGFK--IVAAFDVDPEKIGTKIGGIPVYHIDELEEV 141 (213)
T ss_pred CCeeHHHHHHHHHHHhCCCCCcEEEEECCCHHHHHHHHhhhcccCCcE--EEEEEECChhhcCCEeCCeEEcCHHHHHHH
Confidence 3467778888888777555567899999888755544431 122222 22111 111155
Q ss_pred Hhh--cCEEEecCCCCcchhHHHHHHHcCCeEEecCCCcccccc
Q 016975 211 FHD--YKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSNDFFK 252 (379)
Q Consensus 211 ~~~--~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~~e~i~ 252 (379)
++. .|+++.........-..-.+...|+..|.+-.+..-.+.
T Consensus 142 i~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~ 185 (213)
T PRK05472 142 VKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVP 185 (213)
T ss_pred HHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCC
Confidence 554 677776654444333445567799766665544433333
No 229
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=56.08 E-value=41 Score=26.62 Aligned_cols=67 Identities=13% Similarity=0.090 Sum_probs=35.0
Q ss_pred cccCHHHHH--HHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecC-CCCHHHHHhhcCEEEe
Q 016975 152 WSKGYKELL--ELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPG-RDHADLIFHDYKVFLN 219 (379)
Q Consensus 152 ~~Kg~~~li--~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~-~~~~~~~~~~~dv~v~ 219 (379)
..|+.+..+ +++....+..++.-+++.||++-...++ .+++.|.++.+.+. -...+.+.+.||-|+.
T Consensus 75 ~k~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~Df~~~v~-~l~~~g~~V~v~~~~~~~s~~L~~~ad~f~~ 144 (146)
T PF01936_consen 75 GKKGVDVALAVDILELAYENPPDTIVLVSGDSDFAPLVR-KLRERGKRVIVVGAEDSASEALRSAADEFIS 144 (146)
T ss_dssp -S---HHHHHHHHHHHG--GG-SEEEEE---GGGHHHHH-HHHHH--EEEEEE-GGGS-HHHHHHSSEEEE
T ss_pred ccCCcHHHHHHHHHHHhhccCCCEEEEEECcHHHHHHHH-HHHHcCCEEEEEEeCCCCCHHHHHhcCEEEe
Confidence 567777554 6666665554566677777766544444 45578888888884 2233389999998874
No 230
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=54.24 E-value=63 Score=25.79 Aligned_cols=66 Identities=17% Similarity=0.046 Sum_probs=43.6
Q ss_pred ccccCHHH--HHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCC-HHHHHhhcCEE
Q 016975 151 VWSKGYKE--LLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDH-ADLIFHDYKVF 217 (379)
Q Consensus 151 ~~~Kg~~~--li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~-~~~~~~~~dv~ 217 (379)
..+|+.+. .++++....+...+.-+++-||++. ..+-+.+++.|.++.+.+.-.. +.++...||=|
T Consensus 78 ~~~~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~Df-~~~i~~lr~~G~~V~v~~~~~~~s~~L~~~~d~f 146 (149)
T cd06167 78 SGKKGVDVALAIDALELAYKRRIDTIVLVSGDSDF-VPLVERLRELGKRVIVVGFEAKTSRELRKAADRF 146 (149)
T ss_pred CcccCccHHHHHHHHHHhhhcCCCEEEEEECCccH-HHHHHHHHHcCCEEEEEccCccChHHHHHhCCcc
Confidence 45666665 4477777766556776777777755 4444456667889998887633 33788888743
No 231
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=53.78 E-value=73 Score=22.19 Aligned_cols=58 Identities=10% Similarity=-0.004 Sum_probs=38.3
Q ss_pred cceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCC-cChH-HHHHHHHhcCCeeEE
Q 016975 141 AKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNG-EDFN-QIQEAAEKLKIVVRV 200 (379)
Q Consensus 141 ~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g-~~~~-~l~~~~~~~~l~v~~ 200 (379)
...|++.|.=. ....+.+-+++.++..+.|+.. +|.|.. .--+ ...+.+++.+..+..
T Consensus 3 g~rVli~GgR~-~~D~~~i~~~Ld~~~~~~~~~~-lvhGga~~GaD~iA~~wA~~~gv~~~~ 62 (71)
T PF10686_consen 3 GMRVLITGGRD-WTDHELIWAALDKVHARHPDMV-LVHGGAPKGADRIAARWARERGVPVIR 62 (71)
T ss_pred CCEEEEEECCc-cccHHHHHHHHHHHHHhCCCEE-EEECCCCCCHHHHHHHHHHHCCCeeEE
Confidence 34677777544 3488889999999988888874 666654 3333 345567777765443
No 232
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=53.49 E-value=30 Score=28.63 Aligned_cols=80 Identities=15% Similarity=0.056 Sum_probs=44.5
Q ss_pred cccCCCCCCcEEEEcCCcchhhhhcccccccccCcEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEEEcC
Q 016975 22 SEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIRLS 101 (379)
Q Consensus 22 ~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S 101 (379)
.+......+|+|++.+-..+.-.. +..-.-...|.+..+|.+-..|....+.. .. +.-.+..+.....||.|+..|
T Consensus 52 ~~~~~~~~~dll~aTsmldLa~l~-gL~p~l~~~p~ilYFHENQl~YP~~~~~~--rd-~~~~~~ni~saLaAD~v~FNS 127 (168)
T PF12038_consen 52 QQIPLSHSYDLLFATSMLDLATLR-GLRPDLANVPKILYFHENQLAYPVSPGQE--RD-FQYGMNNIYSALAADRVVFNS 127 (168)
T ss_pred hccccccCCCEEEeeccccHHHHH-hhccCCCCCCEEEEEecCcccCCCCCCcc--cc-ccHHHHHHHHHHhceeeeecc
Confidence 344445678999998755554332 11111122399999998866665322221 11 112223333444489999999
Q ss_pred hhhh
Q 016975 102 AATQ 105 (379)
Q Consensus 102 ~~~~ 105 (379)
..-.
T Consensus 128 ~~nr 131 (168)
T PF12038_consen 128 AFNR 131 (168)
T ss_pred hhhH
Confidence 7744
No 233
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=53.48 E-value=25 Score=24.22 Aligned_cols=66 Identities=12% Similarity=0.166 Sum_probs=44.6
Q ss_pred cCCcEEEEEc-CCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecC
Q 016975 170 LAGLEVDLYG-NGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCAN 244 (379)
Q Consensus 170 ~~~~~l~i~G-~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~ 244 (379)
..++.+.+.| +..+++++++.++.+|..+ ....-...+.+|.... ........+|.+.|+|+|..+
T Consensus 6 F~g~~f~i~~~~~~~~~~l~~~i~~~GG~v--------~~~~~~~~thvI~~~~-~~~~~k~~~~~~~~i~iV~~~ 72 (78)
T PF00533_consen 6 FEGCTFCISGFDSDEREELEQLIKKHGGTV--------SNSFSKKTTHVIVGNP-NKRTKKYKAAIANGIPIVSPD 72 (78)
T ss_dssp TTTEEEEESSTSSSHHHHHHHHHHHTTEEE--------ESSSSTTSSEEEESSS-HCCCHHHHHHHHTTSEEEETH
T ss_pred CCCEEEEEccCCCCCHHHHHHHHHHcCCEE--------EeecccCcEEEEeCCC-CCccHHHHHHHHCCCeEecHH
Confidence 3577888844 3444788999999988664 1123455677775544 334556899999999999753
No 234
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=53.45 E-value=1.4e+02 Score=25.37 Aligned_cols=104 Identities=9% Similarity=-0.004 Sum_probs=61.4
Q ss_pred CcEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHH---HHHh--hcCEEEecCCCC----cchhHHHHHHH---cCC
Q 016975 172 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHAD---LIFH--DYKVFLNPSTTD----VVCTTTAEALA---MGK 238 (379)
Q Consensus 172 ~~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~---~~~~--~~dv~v~ps~~E----~~~~~~~EAma---~G~ 238 (379)
+++++++.+.+. ...++...+..+ ...+.+...+.+ ..+. ..|++++-.... .-|..+++.+. .++
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~-~~~~v~~~~~~~~~~~~~~~~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~~ 81 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIE-WVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSL 81 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHhCCCCEEEEeCcCCCCCCCCHHHHHHHHHHHCCCC
Confidence 467778877665 344666655443 223333333433 3333 358887654332 25677777664 345
Q ss_pred eEEec-CCCcc----cccccCCCEEEeC--CHHHHHHHHHHHHhC
Q 016975 239 IVVCA-NHPSN----DFFKQFPNCRTYD--DRNGFVEATLKALAE 276 (379)
Q Consensus 239 PVI~t-~~g~~----e~i~~~~~g~~~~--~~~~l~~~i~~~l~~ 276 (379)
|||.- ..... +.+..+..|++.. +++++.++|..++..
T Consensus 82 ~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g 126 (216)
T PRK10840 82 SIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKG 126 (216)
T ss_pred cEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCC
Confidence 55543 33332 3466777888887 899999999987764
No 235
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=52.61 E-value=58 Score=29.11 Aligned_cols=43 Identities=21% Similarity=0.254 Sum_probs=32.0
Q ss_pred CCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc
Q 016975 205 DHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS 247 (379)
Q Consensus 205 ~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~ 247 (379)
.+.++++..+|+.+.-+..+...-.+..|+..|+|||+...|-
T Consensus 52 ~dl~~ll~~~DvVid~t~p~~~~~~~~~al~~G~~vvigttG~ 94 (257)
T PRK00048 52 DDLEAVLADADVLIDFTTPEATLENLEFALEHGKPLVIGTTGF 94 (257)
T ss_pred CCHHHhccCCCEEEECCCHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 3444667788999977666666666888999999999875553
No 236
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=51.67 E-value=1.3e+02 Score=27.73 Aligned_cols=74 Identities=19% Similarity=0.165 Sum_probs=38.0
Q ss_pred cCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHH------HHHh-----hc---CEEEecCCCCcchhHHHHHHH
Q 016975 170 LAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD------LIFH-----DY---KVFLNPSTTDVVCTTTAEALA 235 (379)
Q Consensus 170 ~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~------~~~~-----~~---dv~v~ps~~E~~~~~~~EAma 235 (379)
.|+..++|.|.-.-....+...+.+|..+.=.|+.+..+ ..++ .. .+.|.-.+. |+-.+.|+|-
T Consensus 75 npd~VLIIGGp~AVs~~yE~~Lks~GitV~RigG~nR~ETa~~v~~~~~~~yp~af~n~kvvvv~GwD--y~~~~~e~~k 152 (337)
T COG2247 75 NPDLVLIIGGPIAVSPNYENALKSLGITVKRIGGANRYETAEKVAKFFREDYPNAFKNVKVVVVYGWD--YADALMELMK 152 (337)
T ss_pred CCceEEEECCCCcCChhHHHHHHhCCcEEEEecCcchHHHHHHHHHHHHhhchhhhcCeEEEEEeccc--cHHHHHHHHh
Confidence 566533333333335556666666676655556665555 2221 22 233333322 1227788887
Q ss_pred cCC-eEEecCC
Q 016975 236 MGK-IVVCANH 245 (379)
Q Consensus 236 ~G~-PVI~t~~ 245 (379)
-|+ ||+.++.
T Consensus 153 ~~~~p~~~~n~ 163 (337)
T COG2247 153 EGIVPVILKNT 163 (337)
T ss_pred cCcceeEeccc
Confidence 776 6666654
No 237
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=51.16 E-value=1.3e+02 Score=26.72 Aligned_cols=100 Identities=16% Similarity=0.166 Sum_probs=71.4
Q ss_pred eEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcC------hHHHHHHHHhcCCeeEEecC--CCCHH--HHHh
Q 016975 143 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED------FNQIQEAAEKLKIVVRVYPG--RDHAD--LIFH 212 (379)
Q Consensus 143 ~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~------~~~l~~~~~~~~l~v~~~g~--~~~~~--~~~~ 212 (379)
.++|+|-+.-+-|...+-+-+..+++++ ++.|+|++.... -+++-+...+.|.++.-.|. .++.+ +++.
T Consensus 2 riLfiGDvvGk~Gr~~v~~~Lp~lk~ky-k~dfvI~N~ENaa~G~Git~k~y~~l~~~G~dviT~GNH~wd~~ei~~~i~ 80 (266)
T COG1692 2 RILFIGDVVGKPGRKAVKEHLPQLKSKY-KIDFVIVNGENAAGGFGITEKIYKELLEAGADVITLGNHTWDQKEILDFID 80 (266)
T ss_pred eEEEEecccCcchHHHHHHHhHHHHHhh-cCcEEEEcCccccCCcCCCHHHHHHHHHhCCCEEecccccccchHHHHHhh
Confidence 5899999999999999999999998876 467888873221 34444455566777666666 34555 8889
Q ss_pred hcCEEEecCCC-C---cchhHHHHHHHcCCeEEecCC
Q 016975 213 DYKVFLNPSTT-D---VVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 213 ~~dv~v~ps~~-E---~~~~~~~EAma~G~PVI~t~~ 245 (379)
..+.+|=|..+ + |.|..+++ .-|+-+-.++.
T Consensus 81 ~~~~ilRP~N~p~~~~G~G~~~f~--~ng~ki~V~Nl 115 (266)
T COG1692 81 NADRILRPANYPDGTPGKGSRIFK--INGKKLAVINL 115 (266)
T ss_pred cccceeccCCCCCCCCcceEEEEE--eCCcEEEEEEe
Confidence 99999988754 3 45666666 55776666666
No 238
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=49.27 E-value=21 Score=23.84 Aligned_cols=60 Identities=15% Similarity=0.103 Sum_probs=38.5
Q ss_pred EEEEEc-CCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecC
Q 016975 174 EVDLYG-NGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCAN 244 (379)
Q Consensus 174 ~l~i~G-~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~ 244 (379)
.+.+-| .++++..+.+++..+|-. +.+.+ -+....+|. .+..|-+.-.|...|+|||..+
T Consensus 2 ~i~~sg~~~~~~~~l~~~i~~~Gg~--~~~~l------t~~~THLI~---~~~~~~K~~~A~~~gi~vV~~~ 62 (63)
T PF12738_consen 2 VICFSGFSGKERSQLRKLIEALGGK--YSKDL------TKKTTHLIC---SSPEGKKYRKAKEWGIPVVSPD 62 (63)
T ss_dssp EEEEEEB-TTTCCHHHHHHHCTT-E--EESSS------STT-SEEEE---ES--HHHHHHHHHCTSEEEEHH
T ss_pred EEEECCCCHHHHHHHHHHHHHCCCE--Eeccc------cCCceEEEE---eCCCcHHHHHHHHCCCcEECCC
Confidence 355666 456688899998887753 33333 235566666 4556778889999999999753
No 239
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=49.26 E-value=1.8e+02 Score=25.31 Aligned_cols=59 Identities=10% Similarity=-0.111 Sum_probs=31.0
Q ss_pred hcCEEEecCCC-CcchhHHHHHHHcCCeEEecCCCcccccccCCCEEEeCCHHHHHHHHHHHHhC
Q 016975 213 DYKVFLNPSTT-DVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAE 276 (379)
Q Consensus 213 ~~dv~v~ps~~-E~~~~~~~EAma~G~PVI~t~~g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~~ 276 (379)
..|..|..+.. +... .+-++-..|+|+|.-+.... .....+..++.+....+...+++.
T Consensus 55 ~vdgiii~~~~~~~~~-~~~~~~~~~ipvV~~~~~~~----~~~~~v~~d~~~~g~~~~~~l~~~ 114 (266)
T cd06282 55 RVDGLILTVADAATSP-ALDLLDAERVPYVLAYNDPQ----PGRPSVSVDNRAAARDVAQALAAL 114 (266)
T ss_pred CCCEEEEecCCCCchH-HHHHHhhCCCCEEEEeccCC----CCCCEEeeCcHHHHHHHHHHHHHc
Confidence 35666653322 2222 34556688999988765322 111233344556666666666554
No 240
>KOG4131 consensus Ngg1-interacting factor 3 protein NIF3L1 [General function prediction only]
Probab=49.02 E-value=57 Score=28.63 Aligned_cols=91 Identities=18% Similarity=0.271 Sum_probs=49.5
Q ss_pred ceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEe-cCCCCHHHHHhh--cCEEE
Q 016975 142 KGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVY-PGRDHADLIFHD--YKVFL 218 (379)
Q Consensus 142 ~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~-g~~~~~~~~~~~--~dv~v 218 (379)
..+.| ||...-|=---+++.++++++..+.+++... .|+. ++..++ .|-+- |.- ..++.. +|+++
T Consensus 144 ~~~G~-gr~~e~~~~~~~~~~l~~ik~~l~~v~val~-~g~~---~~~~i~----~V~vcAgsg---~svlk~~~adly~ 211 (272)
T KOG4131|consen 144 ETIGY-GREEETKINLNVVEILKRIKRGLSSVRVALA-VGHT---LESQIK----KVAVCAGSG---SSVLKGVDADLYI 211 (272)
T ss_pred ccccc-cceeeccCcccHHHHHHHHHhcCCeEEEeec-cCCc---ccccee----EEEEeeccC---cceeccccccEEE
Confidence 35666 8876554444488888888776666655543 2321 111111 11111 110 023344 55555
Q ss_pred ecCCCCcchhHHHHHHHcCCeEEecCCCc
Q 016975 219 NPSTTDVVCTTTAEALAMGKIVVCANHPS 247 (379)
Q Consensus 219 ~ps~~E~~~~~~~EAma~G~PVI~t~~g~ 247 (379)
-- |-.=--++++++.|+-||..++..
T Consensus 212 TG---EmSHH~vL~~~~~g~sVilc~HSN 237 (272)
T KOG4131|consen 212 TG---EMSHHDVLDAAANGISVILCEHSN 237 (272)
T ss_pred ec---cccHHHHHHHHHcCCeEEEecCCC
Confidence 21 222334899999999999998854
No 241
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=47.65 E-value=1.7e+02 Score=26.47 Aligned_cols=42 Identities=10% Similarity=-0.004 Sum_probs=25.8
Q ss_pred HHHHHHHHHhcCCc-ccceeecccCCCCCchHHHHHHhCCCCC
Q 016975 333 EASAYVHFLASGFE-TSRRAFGAIPGSLHPDEELCKELGLVTP 374 (379)
Q Consensus 333 ~~l~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 374 (379)
.+...+..++...+ ....+++.....-....+.+++.|+..|
T Consensus 186 ~~~~~~~~~L~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~~p 228 (303)
T cd01539 186 QAKDKMDALLLKYGDKIEAVIANNDAMALGAIEALQKYGYNKG 228 (303)
T ss_pred HHHHHHHHHHHhcCCCccEEEECCchHHHHHHHHHHHcCCCcC
Confidence 33344444554432 3567777665555567788889998777
No 242
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=47.49 E-value=2e+02 Score=25.32 Aligned_cols=41 Identities=7% Similarity=-0.053 Sum_probs=24.5
Q ss_pred HHHHHHHHhcCCc-ccceeecccCCCCCchHHHHHHhCCCCC
Q 016975 334 ASAYVHFLASGFE-TSRRAFGAIPGSLHPDEELCKELGLVTP 374 (379)
Q Consensus 334 ~l~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 374 (379)
+...+..++...+ ....+++.....-....+.+++.|+..|
T Consensus 171 ~~~~~~~~l~~~~~~~~aI~~~~d~~a~g~~~a~~~~g~~ip 212 (273)
T cd06309 171 GKEVMEALLKAHGDDIDAVYAHNDEMALGAIQAIKAAGKKPG 212 (273)
T ss_pred HHHHHHHHHHhCCCCccEEEECCcHHHHHHHHHHHHcCCCCC
Confidence 3444445554443 3566666655544456678889998765
No 243
>PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 10 GT10 from CAZY comprises enzymes with two known activities; galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) and galactoside 3-fucosyltransferase (2.4.1.152 from EC). The galactoside 3-fucosyltransferases display similarities with the alpha-2 and alpha-6-fucosyltranferases []. The biosynthesis of the carbohydrate antigen sialyl Lewis X (sLe(x)) is dependent on the activity of an galactoside 3-fucosyltransferase. This enzyme catalyses the transfer of fucose from GDP-beta-fucose to the 3-OH of N-acetylglucosamine present in lactosamine acceptors []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) belongs to the Lewis blood group system and is associated with Le(a/b) antigen. ; GO: 0008417 fucosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 2NZX_B 2NZW_C 2NZY_C.
Probab=47.46 E-value=82 Score=29.67 Aligned_cols=91 Identities=18% Similarity=0.182 Sum_probs=46.4
Q ss_pred CeeEEecCCC--------CHHHHHhhcCEEEec--CCCCcchh-HHHHHHHcCC-eEEecCC-Cc-ccccccCCCEEE-e
Q 016975 196 IVVRVYPGRD--------HADLIFHDYKVFLNP--STTDVVCT-TTAEALAMGK-IVVCANH-PS-NDFFKQFPNCRT-Y 260 (379)
Q Consensus 196 l~v~~~g~~~--------~~~~~~~~~dv~v~p--s~~E~~~~-~~~EAma~G~-PVI~t~~-g~-~e~i~~~~~g~~-~ 260 (379)
+.|..+|... ...++++.+.+++.. |..+++=. ++.+|+..|+ ||+--.. +. .+++.. +.++ +
T Consensus 202 ~~vd~yG~c~~~~~~~~~~~~~~~~~ykF~lafENs~c~dYiTEK~~~al~~g~VPI~~G~~~~~~~~~~P~--~SfI~~ 279 (349)
T PF00852_consen 202 IPVDSYGKCGNNNPCPRDCKLELLSKYKFYLAFENSNCPDYITEKFWNALLAGTVPIYWGPPRPNYEEFAPP--NSFIHV 279 (349)
T ss_dssp S-EEE-SSTT--SSS--S-HHHHHHTEEEEEEE-SS--TT---HHHHHHHHTTSEEEEES---TTHHHHS-G--GGSEEG
T ss_pred cCeEccCCCCCCCCcccccccccccCcEEEEEecCCCCCCCCCHHHHHHHHCCeEEEEECCEecccccCCCC--CCccch
Confidence 4666666651 112788888887754 23344433 6889999999 5554422 23 445544 2333 3
Q ss_pred C---CHHHHHHHHHHHHhCCCCCCcHHHHhcCCHHH
Q 016975 261 D---DRNGFVEATLKALAEEPALPTEAQRHQLSWES 293 (379)
Q Consensus 261 ~---~~~~l~~~i~~~l~~~~~~~~~~~~~~~sw~~ 293 (379)
+ ++++|++-|..+-+|+. ...+.|.|..
T Consensus 280 ~df~s~~~La~yl~~l~~n~~-----~Y~~yf~Wr~ 310 (349)
T PF00852_consen 280 DDFKSPKELADYLKYLDKNDE-----LYNKYFEWRK 310 (349)
T ss_dssp GGSSSHHHHHHHHHHHHT-HH-----HHH-------
T ss_pred hcCCCHHHHHHHHHHHhcCHH-----HHhhhccccc
Confidence 2 89999999999877633 3334555543
No 244
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=47.43 E-value=2.7e+02 Score=27.10 Aligned_cols=122 Identities=12% Similarity=0.092 Sum_probs=69.7
Q ss_pred cceEEEcCh---hhhhhhh-ccceeecccCCCCccCccccHHH----hhcC---CCCCcceEEEEEecccccCHHHHHHH
Q 016975 94 CHKVIRLSA---ATQEYAN-SIICNVHGVNPKFLEIGKKKKEQ----QQNG---THAFAKGAYYIGKMVWSKGYKELLEL 162 (379)
Q Consensus 94 ~d~vi~~S~---~~~~~~~-~~i~~i~gvd~~~~~~~~~~~~~----~~~~---~~~~~~~il~vgrl~~~Kg~~~li~a 162 (379)
+|.++.=.. ...++.+ ..+.+||+-|.+...|....... ...+ ..-....|.++|-+...+=...++.+
T Consensus 183 ~D~IviR~~~~~~~~e~A~~s~vPVINAgdg~~~HPtQaLaDl~Ti~E~~g~~g~~l~G~kIa~vGD~~~~rv~~Sl~~~ 262 (429)
T PRK11891 183 VDALVIRHPEQGSVAEFARATNLPVINGGDGPGEHPSQALLDLYTIQREFSRLGKIVDGAHIALVGDLKYGRTVHSLVKL 262 (429)
T ss_pred CCEEEEeCCchhHHHHHHHhCCCCEEECCCCCCCCcHHHHHHHHHHHHHhCccCCCcCCCEEEEECcCCCChHHHHHHHH
Confidence 577766552 2333332 46788898875556664332221 1221 11224689999977433434455555
Q ss_pred HHHhHhhcCCcEEEEEcCCcC--hHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCC
Q 016975 163 LDDHQKELAGLEVDLYGNGED--FNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPST 222 (379)
Q Consensus 163 ~~~l~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~ 222 (379)
+.. ..++++.+++.... .+++.+.+++.|.++.+ .++.++.+..+||+...+.
T Consensus 263 la~----~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~---~~d~~eav~~ADVVYt~~~ 317 (429)
T PRK11891 263 LAL----YRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQ---TDDLAAGLRGADVVYATRI 317 (429)
T ss_pred HHH----hcCCEEEEECCCccccCHHHHHHHHhcCCeEEE---EcCHHHHhCCCCEEEEcCc
Confidence 432 34688999985332 34555555555655554 3556688999999887664
No 245
>KOG3185 consensus Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]
Probab=47.40 E-value=28 Score=29.26 Aligned_cols=65 Identities=11% Similarity=0.032 Sum_probs=41.1
Q ss_pred hcCEEEecCCCCcchh----------HHHHHHHcC-CeEEecCCCcccccc----cCCCEEEeC--CHHHHHHHHHHHHh
Q 016975 213 DYKVFLNPSTTDVVCT----------TTAEALAMG-KIVVCANHPSNDFFK----QFPNCRTYD--DRNGFVEATLKALA 275 (379)
Q Consensus 213 ~~dv~v~ps~~E~~~~----------~~~EAma~G-~PVI~t~~g~~e~i~----~~~~g~~~~--~~~~l~~~i~~~l~ 275 (379)
.+++.++.++...||+ +.+||-..+ +|||-|.+|+..++. ...+|++++ ..++=.+.|..-+.
T Consensus 10 s~eiGvf~kLTNtYclva~ggS~nfys~~e~el~d~IPiV~tsI~g~riiGrl~~GNr~GLLvp~~tTDqElqHlRnSLP 89 (245)
T KOG3185|consen 10 SNEIGVFSKLTNTYCLVAIGGSENFYSAFEAELGDVIPIVHTSIGGTRIIGRLCVGNRHGLLVPHTTTDQELQHLRNSLP 89 (245)
T ss_pred CcceeeeeecccceEEEEecCchhHHHHHHHHhcCccceEEeeccceeeeehhhccCcCceecCCcCcHHHHHHHHhcCC
Confidence 3556666655555543 477776655 599999997755443 457899999 34444455555555
Q ss_pred CC
Q 016975 276 EE 277 (379)
Q Consensus 276 ~~ 277 (379)
|+
T Consensus 90 d~ 91 (245)
T KOG3185|consen 90 DE 91 (245)
T ss_pred cc
Confidence 44
No 246
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=47.28 E-value=39 Score=27.10 Aligned_cols=89 Identities=17% Similarity=0.251 Sum_probs=49.8
Q ss_pred HHHHHHHHhcCCeeEEecCCCCHH--HHHhhc-----CEEEecCCCCcchhHHHHHH-HcCCeEEecCCC---cccccc-
Q 016975 185 NQIQEAAEKLKIVVRVYPGRDHAD--LIFHDY-----KVFLNPSTTDVVCTTTAEAL-AMGKIVVCANHP---SNDFFK- 252 (379)
Q Consensus 185 ~~l~~~~~~~~l~v~~~g~~~~~~--~~~~~~-----dv~v~ps~~E~~~~~~~EAm-a~G~PVI~t~~g---~~e~i~- 252 (379)
..+++.+.++|..+.|+-.=...+ ++++.+ -+.+||.-+--.+.++.+|+ +.++|+|=-... .+|.+.
T Consensus 32 ~~~~~~a~~~g~~v~~~QSN~EGelid~I~~a~~~~dgiIINpga~thtS~Ai~DAl~~~~~P~vEVHiSNi~~RE~fR~ 111 (140)
T PF01220_consen 32 QKCKETAAELGVEVEFFQSNHEGELIDWIHEARDDVDGIIINPGAYTHTSIAIRDALKAISIPVVEVHISNIHAREEFRH 111 (140)
T ss_dssp HHHHHHHHHTTEEEEEEE-SSHHHHHHHHHHHTCTTSEEEEE-GGGGHT-HHHHHHHHCCTS-EEEEESS-GGGS-GGGG
T ss_pred HHHHHHHHHCCCeEEEEecCCHHHHHHHHHHHHhhCCEEEEccchhccccHHHHHHHHcCCCCEEEEEcCCccccccccc
Confidence 345556667777777763222222 444444 46789988888889999997 568899865542 244333
Q ss_pred -----cCCCEEEeC-CHHHHHHHHHHH
Q 016975 253 -----QFPNCRTYD-DRNGFVEATLKA 273 (379)
Q Consensus 253 -----~~~~g~~~~-~~~~l~~~i~~~ 273 (379)
..-.|.+.- -.+...-+|..+
T Consensus 112 ~S~~s~~~~g~I~G~G~~gY~lAl~al 138 (140)
T PF01220_consen 112 HSVISPVAVGVISGFGADGYLLALEAL 138 (140)
T ss_dssp --SSGGGSSEEEESSTTHHHHHHHHHH
T ss_pred ccccccccEEEEEeCCHHHHHHHHHHH
Confidence 333555555 555555555544
No 247
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=46.66 E-value=14 Score=30.65 Aligned_cols=70 Identities=10% Similarity=0.081 Sum_probs=40.3
Q ss_pred ccccccCCCCCCcEEEEcCCcchhh-hhccccccccc-C-cEEEEeccChH-HHHHHhhcchHHHHHHHHHHHHHHHHhc
Q 016975 19 GDISEVIPDEVADIAVLEEPEHLTW-FHHGKRWKTKF-R-YVVGIVHTNYL-EYVKREKNGRLQAFLLKYANSWLVDIYC 94 (379)
Q Consensus 19 ~~l~~~l~~~~~DvV~~~~p~~~~~-~~~~~~~~~~~-~-~vv~~~h~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (379)
..+.++|.+.+||+|++..|..... .... +..... . |++.++.+... +.. | +.. .+
T Consensus 79 ~~l~~~l~~~~PD~IIsThp~~~~~~l~~l-k~~~~~~~~p~~tvvTD~~~~H~~----------W----~~~-----~~ 138 (169)
T PF06925_consen 79 RRLIRLLREFQPDLIISTHPFPAQVPLSRL-KRRGRLPNIPVVTVVTDFDTVHPF----------W----IHP-----GV 138 (169)
T ss_pred HHHHHHHhhcCCCEEEECCcchhhhHHHHH-HHhhcccCCcEEEEEcCCCCCCcC----------e----ecC-----CC
Confidence 3688889999999999998875444 3211 222222 2 55544443211 111 0 111 14
Q ss_pred ceEEEcChhhhhhh
Q 016975 95 HKVIRLSAATQEYA 108 (379)
Q Consensus 95 d~vi~~S~~~~~~~ 108 (379)
|..++.|+.+++..
T Consensus 139 D~y~Vase~~~~~l 152 (169)
T PF06925_consen 139 DRYFVASEEVKEEL 152 (169)
T ss_pred CEEEECCHHHHHHH
Confidence 99999998877544
No 248
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=46.20 E-value=2.1e+02 Score=28.00 Aligned_cols=113 Identities=15% Similarity=0.078 Sum_probs=73.4
Q ss_pred cccccCHHHHHHHHHHhHhhcCCcEEEEEcCC--cChHHHHHHHHhcCCeeEEecCCCCHH----------HHHhhcCEE
Q 016975 150 MVWSKGYKELLELLDDHQKELAGLEVDLYGNG--EDFNQIQEAAEKLKIVVRVYPGRDHAD----------LIFHDYKVF 217 (379)
Q Consensus 150 l~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g--~~~~~l~~~~~~~~l~v~~~g~~~~~~----------~~~~~~dv~ 217 (379)
.....+++.++.+.... ....+.-|.| ...+.+.+.+++.+ +.|.|.-...- .+++.+.|-
T Consensus 57 ~~syl~i~~ii~~a~~~-----gadai~pGygflsen~~fae~~~~~g--l~fiGP~~~~i~~mgdK~~ar~~~~~aGVP 129 (449)
T COG0439 57 ADSYLNIDAIIAAAEET-----GADAIHPGYGFLSENAAFAEACAEAG--LTFIGPSAEAIRRMGDKITARRLMAKAGVP 129 (449)
T ss_pred hhhhhhHHHHHHHHHhc-----CCceEcccchhhhCCHHHHHHHHHcC--CeeeCcCHHHHHHhhhHHHHHHHHHHcCCC
Confidence 34567777777776653 4556667766 55677778888877 55665432221 788888998
Q ss_pred EecCCCCcchh----HHHHHHHcCCeEEecCC-CcccccccCCCE-EEeCCHHHHHHHHHHHHhC
Q 016975 218 LNPSTTDVVCT----TTAEALAMGKIVVCANH-PSNDFFKQFPNC-RTYDDRNGFVEATLKALAE 276 (379)
Q Consensus 218 v~ps~~E~~~~----~~~EAma~G~PVI~t~~-g~~e~i~~~~~g-~~~~~~~~l~~~i~~~l~~ 276 (379)
+.|-. ++.-- ..--|-.-|-|||.-.. |+ +..| .++.|.++|.+++..+...
T Consensus 130 ~vpgs-~~~~~~~ee~~~~a~~iGyPVivKa~~Gg------Gg~G~r~v~~~~el~~a~~~~~~e 187 (449)
T COG0439 130 VVPGS-DGAVADNEEALAIAEEIGYPVIVKAAAGG------GGRGMRVVRNEEELEAAFEAARGE 187 (449)
T ss_pred cCCCC-CCCcCCHHHHHHHHHHcCCCEEEEECCCC------CcccEEEECCHHHHHHHHHHHHHH
Confidence 88865 33311 12223456889998766 33 1233 7778999999999887664
No 249
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=45.84 E-value=1.9e+02 Score=25.93 Aligned_cols=100 Identities=12% Similarity=0.067 Sum_probs=57.3
Q ss_pred EEEEecccccCHHHHHHHHHHhHhhcCCcEE-----------EEEcCCcC-hHHHHHHHHhcCCeeEEecC-CCCHHHHH
Q 016975 145 YYIGKMVWSKGYKELLELLDDHQKELAGLEV-----------DLYGNGED-FNQIQEAAEKLKIVVRVYPG-RDHADLIF 211 (379)
Q Consensus 145 l~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l-----------~i~G~g~~-~~~l~~~~~~~~l~v~~~g~-~~~~~~~~ 211 (379)
++++...--...+.+++.++.++.....+.. -+-|.|.. ...+++.+++.|+.+--... ..+.+.+.
T Consensus 27 ~~IAGpc~ie~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp~s~~g~g~~gl~~l~~~~~~~Gl~~~t~~~d~~~~~~l~ 106 (260)
T TIGR01361 27 IVIAGPCSVESEEQIMETARFVKEAGAKILRGGAFKPRTSPYSFQGLGEEGLKLLRRAADEHGLPVVTEVMDPRDVEIVA 106 (260)
T ss_pred EEEEeCCccCCHHHHHHHHHHHHHHHHHhccCceecCCCCCccccccHHHHHHHHHHHHHHhCCCEEEeeCChhhHHHHH
Confidence 3455555566788888888887744322111 01222222 45577777887765322211 22333444
Q ss_pred hhcCEEEecCCCCcchhHHHHH-HHcCCeEEecCC
Q 016975 212 HDYKVFLNPSTTDVVCTTTAEA-LAMGKIVVCANH 245 (379)
Q Consensus 212 ~~~dv~v~ps~~E~~~~~~~EA-ma~G~PVI~t~~ 245 (379)
..+|++-.+|. +.....++++ ...|+||+.+.-
T Consensus 107 ~~~d~lkI~s~-~~~n~~LL~~~a~~gkPVilk~G 140 (260)
T TIGR01361 107 EYADILQIGAR-NMQNFELLKEVGKQGKPVLLKRG 140 (260)
T ss_pred hhCCEEEECcc-cccCHHHHHHHhcCCCcEEEeCC
Confidence 55799999986 3334445555 467999998876
No 250
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=44.74 E-value=96 Score=26.32 Aligned_cols=69 Identities=16% Similarity=0.153 Sum_probs=46.4
Q ss_pred EEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCCCC-----------cchhHHHHHHHcCCeEEec
Q 016975 175 VDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTD-----------VVCTTTAEALAMGKIVVCA 243 (379)
Q Consensus 175 l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~~E-----------~~~~~~~EAma~G~PVI~t 243 (379)
++.+|+......+.+..+..+.++.+.....+ ...+|.+++|.-.+ ++--.+.++...|+||++.
T Consensus 3 ~~~y~~~gN~~~l~~~~~~~G~~~~~~~~~~~----~~~~d~lilpGg~~~~~~~~~~~~~~~~~~i~~~~~~g~pvlgi 78 (194)
T cd01750 3 VIRYPDISNFTDLDPLAREPGVDVRYVEVPEG----LGDADLIILPGSKDTIQDLAWLRKRGLAEAIKNYARAGGPVLGI 78 (194)
T ss_pred eecCCCccCHHHHHHHHhcCCceEEEEeCCCC----CCCCCEEEECCCcchHHHHHHHHHcCHHHHHHHHHHCCCcEEEE
Confidence 45566666677788888777777777754443 45678888886431 1223467778889999987
Q ss_pred CCCc
Q 016975 244 NHPS 247 (379)
Q Consensus 244 ~~g~ 247 (379)
-.|.
T Consensus 79 C~G~ 82 (194)
T cd01750 79 CGGY 82 (194)
T ss_pred CHHH
Confidence 6654
No 251
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=44.44 E-value=92 Score=30.40 Aligned_cols=87 Identities=15% Similarity=0.130 Sum_probs=46.6
Q ss_pred ccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhh--cCEEEecCCC-CcchhH
Q 016975 153 SKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPSTT-DVVCTT 229 (379)
Q Consensus 153 ~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~--~dv~v~ps~~-E~~~~~ 229 (379)
.+|++.+.+...++ . .+.+.+++.....+++......+...+++.+.+...++... +|++|+..-. .|. .+
T Consensus 92 g~Ni~lL~~q~~~f---~--p~~v~v~d~~~~~~l~~~l~~~~~~~~vl~G~egl~~la~~~evDiVV~AIvG~aGL-~p 165 (454)
T PLN02696 92 GSNVTLLADQVRKF---K--PKLVAVRNESLVDELKEALADLDDKPEIIPGEEGIVEVARHPEAVTVVTGIVGCAGL-KP 165 (454)
T ss_pred CCCHHHHHHHHHHh---C--CCEEEEcCHHHHHHHHHhhcCCCCCcEEEECHHHHHHHHcCCCCCEEEEeCccccch-HH
Confidence 45666666555554 1 23455555444444444332111123344333333355554 4888877543 233 34
Q ss_pred HHHHHHcCCeEEecCC
Q 016975 230 TAEALAMGKIVVCANH 245 (379)
Q Consensus 230 ~~EAma~G~PVI~t~~ 245 (379)
.++|+.+|+.|...+-
T Consensus 166 Tl~AIkaGK~VALANK 181 (454)
T PLN02696 166 TVAAIEAGKDIALANK 181 (454)
T ss_pred HHHHHHCCCcEEEecH
Confidence 6999999999888873
No 252
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.30 E-value=2.9e+02 Score=26.52 Aligned_cols=161 Identities=13% Similarity=0.155 Sum_probs=94.5
Q ss_pred ceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEc-CCcC------hHHHHHHHHhcCC-eeEEe--cCCCCHH---
Q 016975 142 KGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYG-NGED------FNQIQEAAEKLKI-VVRVY--PGRDHAD--- 208 (379)
Q Consensus 142 ~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G-~g~~------~~~l~~~~~~~~l-~v~~~--g~~~~~~--- 208 (379)
..|=|.|+....+-.....+.+.+.+++ ++.++|+- +|.. .+++.+..+..+. ++.|. ...-+..
T Consensus 155 ~~iP~ygsyte~dpv~ia~egv~~fKke--~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Q 232 (483)
T KOG0780|consen 155 ARVPFYGSYTEADPVKIASEGVDRFKKE--NFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQ 232 (483)
T ss_pred hCCeeEecccccchHHHHHHHHHHHHhc--CCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHH
Confidence 3466788888888888889999888765 67778876 3333 3556666665555 34433 2222221
Q ss_pred -HHHh-hcCE--EEecCCC-Cc-chhHHHHHHHcCCeEEecCCCc-ccccccCCCE-----EEeC-CHHHHHHHHHHHHh
Q 016975 209 -LIFH-DYKV--FLNPSTT-DV-VCTTTAEALAMGKIVVCANHPS-NDFFKQFPNC-----RTYD-DRNGFVEATLKALA 275 (379)
Q Consensus 209 -~~~~-~~dv--~v~ps~~-E~-~~~~~~EAma~G~PVI~t~~g~-~e~i~~~~~g-----~~~~-~~~~l~~~i~~~l~ 275 (379)
..++ ..|+ .|.+-.. .+ -|-++---.|.++|||--..|- -+.++....- ++-- |.+.|.+.+.++..
T Consensus 233 a~aFk~~vdvg~vIlTKlDGhakGGgAlSaVaaTksPIiFIGtGEhmdDlE~F~pk~FvsrlLGmGDi~glvek~~ev~~ 312 (483)
T KOG0780|consen 233 ARAFKETVDVGAVILTKLDGHAKGGGALSAVAATKSPIIFIGTGEHMDDLEPFDPKPFVSRLLGMGDIEGLVEKVQEVGK 312 (483)
T ss_pred HHHHHHhhccceEEEEecccCCCCCceeeehhhhCCCEEEEecCccccccCCCChHHHHHHHhccccHHHHHHHHHHHhh
Confidence 2222 2244 4555332 11 1222222346788999877754 3433332211 2222 88999999999874
Q ss_pred CCCCCC-cHHHHhcCCHHHHHHHHHHHHhc
Q 016975 276 EEPALP-TEAQRHQLSWESATERFLQVAEL 304 (379)
Q Consensus 276 ~~~~~~-~~~~~~~~sw~~~~~~~~~~~~~ 304 (379)
++...+ ..-..-+|+...+.+++..+..+
T Consensus 313 ~d~~el~~kl~~gkFtlrd~y~Qfq~imkm 342 (483)
T KOG0780|consen 313 DDAKELVEKLKQGKFTLRDFYDQFQNIMKM 342 (483)
T ss_pred hhHHHHHHHHHhCCccHHHHHHHHHHHHhh
Confidence 444322 22333689999999999888875
No 253
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=44.24 E-value=2.2e+02 Score=24.86 Aligned_cols=148 Identities=15% Similarity=0.037 Sum_probs=67.2
Q ss_pred hcCEEEecCC-CCcchhHHHHHHHcCCeEEecCCCcccccccCCCEEEeCCHHHHHHHHHHHHhCCCCCCcHH-HH-hcC
Q 016975 213 DYKVFLNPST-TDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEEPALPTEA-QR-HQL 289 (379)
Q Consensus 213 ~~dv~v~ps~-~E~~~~~~~EAma~G~PVI~t~~g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~~~~~~~~~~-~~-~~~ 289 (379)
..|.++..+. .+. ..+.++...|+|||+-+....+ .....+..++.+....+...+++.....+.-- .. ...
T Consensus 55 ~vdgiii~~~~~~~--~~~~~~~~~~ipvV~~~~~~~~---~~~~~V~~d~~~~g~~~~~~l~~~g~~~i~~i~~~~~~~ 129 (264)
T cd06274 55 QVDALIVAGSLPPD--DPYYLCQKAGLPVVALDRPGDP---SRFPSVVSDNRDGAAELTRELLAAPPEEVLFLGGLPELS 129 (264)
T ss_pred CCCEEEEcCCCCch--HHHHHHHhcCCCEEEecCccCC---CCCCEEEEccHHHHHHHHHHHHHCCCCcEEEEeCCCccc
Confidence 4465554433 232 2256777889999998775321 11233445566665666666665433322110 10 111
Q ss_pred CHHHHHHHHHHHHhcccccccCCCCCCCccccccchhHHHhHHHHHHHHHHHhcCC-cccceeecccCCCCCchHHHHHH
Q 016975 290 SWESATERFLQVAELDQAVVKKPSKSPSKHFASTSLNLKKNMEEASAYVHFLASGF-ETSRRAFGAIPGSLHPDEELCKE 368 (379)
Q Consensus 290 sw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~ 368 (379)
....-.+-|.+.++...-.... . ....... ..+.+...+..++... +....+++.......-..+.+++
T Consensus 130 ~~~~R~~gf~~~~~~~~~~~~~------~--~~~~~~~--~~~~~~~~~~~~l~~~~~~~~ai~~~~d~~A~g~~~al~~ 199 (264)
T cd06274 130 PSRERLAGFRQALADAGLPVQP------D--WIYAEGY--SPESGYQLMAELLARLGRLPRALFTTSYTLLEGVLRFLRE 199 (264)
T ss_pred chHHHHHHHHHHHHHcCCCCCc------c--eeecCCC--ChHHHHHHHHHHHccCCCCCcEEEEcChHHHHHHHHHHHH
Confidence 1222233334444321100000 0 0000000 1234455555555543 33456665543334446678888
Q ss_pred hCCCCCC
Q 016975 369 LGLVTPM 375 (379)
Q Consensus 369 ~~~~~~~ 375 (379)
.|+..|+
T Consensus 200 ~g~~ip~ 206 (264)
T cd06274 200 RPGLAPS 206 (264)
T ss_pred cCCCCCc
Confidence 8886554
No 254
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=43.75 E-value=1.1e+02 Score=26.17 Aligned_cols=71 Identities=10% Similarity=0.051 Sum_probs=44.0
Q ss_pred cEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc
Q 016975 173 LEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS 247 (379)
Q Consensus 173 ~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~ 247 (379)
.+++++.. ...+++.+.+.. + .+.+... ...+..+..+|+++..+..+.....+.+....|++|-+.+.+.
T Consensus 34 a~V~VIs~-~~~~~l~~l~~~-~-~i~~~~~-~~~~~~l~~adlViaaT~d~elN~~i~~~a~~~~lvn~~d~~~ 104 (202)
T PRK06718 34 AHIVVISP-ELTENLVKLVEE-G-KIRWKQK-EFEPSDIVDAFLVIAATNDPRVNEQVKEDLPENALFNVITDAE 104 (202)
T ss_pred CeEEEEcC-CCCHHHHHHHhC-C-CEEEEec-CCChhhcCCceEEEEcCCCHHHHHHHHHHHHhCCcEEECCCCc
Confidence 45666653 223455555543 2 3444322 1122457788988888777777777777778899998888743
No 255
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=43.67 E-value=34 Score=28.16 Aligned_cols=34 Identities=24% Similarity=0.222 Sum_probs=25.3
Q ss_pred hcCEEEecCC----CC--cchhHHHHHHHcCCeEEecCCC
Q 016975 213 DYKVFLNPST----TD--VVCTTTAEALAMGKIVVCANHP 246 (379)
Q Consensus 213 ~~dv~v~ps~----~E--~~~~~~~EAma~G~PVI~t~~g 246 (379)
.+|++|+.-. .| |+.-.+.+|++.|+||+++=..
T Consensus 93 ~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~ 132 (159)
T PF10649_consen 93 GADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPP 132 (159)
T ss_pred CCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECH
Confidence 3599887743 23 4445689999999999998663
No 256
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=43.43 E-value=3.1e+02 Score=26.34 Aligned_cols=132 Identities=8% Similarity=-0.002 Sum_probs=75.9
Q ss_pred CCCcceEEEEEeccccc---C---HHHHHHHHHHhHhhc-CCcEEEEEcCCcChH-HHHHHHHhcCCeeEEecCCCC-HH
Q 016975 138 HAFAKGAYYIGKMVWSK---G---YKELLELLDDHQKEL-AGLEVDLYGNGEDFN-QIQEAAEKLKIVVRVYPGRDH-AD 208 (379)
Q Consensus 138 ~~~~~~il~vgrl~~~K---g---~~~li~a~~~l~~~~-~~~~l~i~G~g~~~~-~l~~~~~~~~l~v~~~g~~~~-~~ 208 (379)
+.++++|+|.-...... | ....++..+..+... .++.+++ =-.+... .+.... +.. .+.-.+++ .+
T Consensus 205 ~~~k~vIlyaPTfr~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~-k~Hp~is~~~~~~~-~~~---~~~~~vs~~~d 279 (388)
T COG1887 205 PQDKKVILYAPTFRDNDVLIGTQFFNLDIDIEKLKEKLGENEYVIIV-KPHPLISDKIDKRY-ALD---DFVLDVSDNAD 279 (388)
T ss_pred cccCceEEecCCccCCccccchhhhhhhhhHHHHHHhhccCCeEEEE-ecChhhhhhhhhhh-hcc---ceeEecccchh
Confidence 44578899988776654 2 333333333333333 3454444 3333322 221111 111 12222222 33
Q ss_pred --HHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc---------ccccccCCCEEEeCCHHHHHHHHHHHHhCC
Q 016975 209 --LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS---------NDFFKQFPNCRTYDDRNGFVEATLKALAEE 277 (379)
Q Consensus 209 --~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~---------~e~i~~~~~g~~~~~~~~l~~~i~~~l~~~ 277 (379)
++|..+|++|. .++-+..|+|...+|||.--.-. ........-|-++.+..++.++|.....++
T Consensus 280 i~dll~~sDiLIT-----DySSv~fdf~~l~KPiify~~D~~~y~~~rg~~~d~~~~~Pg~~~~~~~~li~ai~~~~~~~ 354 (388)
T COG1887 280 INDLLLVSDILIT-----DYSSVIFDFMLLDKPIIFYTYDLEQYDELRGFYLDYKFEAPGEVVETQEELIDAIKPYDEDG 354 (388)
T ss_pred HHHHHhhhCEEEe-----echHHHHHHHHhcCcEEEEecChHHHHhhhhhhhhHHhcCCccccccHHHHHHHHHhhhccc
Confidence 99999999994 36778999999999999865421 112233445677778899999999877755
Q ss_pred CC
Q 016975 278 PA 279 (379)
Q Consensus 278 ~~ 279 (379)
..
T Consensus 355 ~~ 356 (388)
T COG1887 355 NY 356 (388)
T ss_pred ch
Confidence 44
No 257
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=43.33 E-value=1e+02 Score=29.46 Aligned_cols=89 Identities=13% Similarity=0.122 Sum_probs=55.2
Q ss_pred ccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHh--hcCEEEecCCCCcch-
Q 016975 151 VWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPSTTDVVC- 227 (379)
Q Consensus 151 ~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~--~~dv~v~ps~~E~~~- 227 (379)
...+|++.|.+...++ .| +.+++++......++......+.+.+++.+.+.-.++.. .+|+.|+.... .-|
T Consensus 34 aa~~n~~~L~~q~~~f---~p--~~v~i~d~~~~~~l~~~l~~~~~~~~v~~G~~~l~~l~~~~~~D~vv~AivG-~aGL 107 (389)
T TIGR00243 34 SAGKNVALMVEQILEF---RP--KFVAIDDEASLKDLKTMLQQQGSRTEVLVGEEGICEMAALEDVDQVMNAIVG-AAGL 107 (389)
T ss_pred EcCCCHHHHHHHHHHc---CC--CEEEEcCHHHHHHHHHHhhcCCCCcEEEECHHHHHHHHcCCCCCEEEEhhhc-HhhH
Confidence 4578999888888776 23 456667666556666544211323456544433335555 34888886532 223
Q ss_pred hHHHHHHHcCCeEEecCC
Q 016975 228 TTTAEALAMGKIVVCANH 245 (379)
Q Consensus 228 ~~~~EAma~G~PVI~t~~ 245 (379)
.++++|+.+|+.+--.+-
T Consensus 108 ~pt~~Ai~~gk~iaLANK 125 (389)
T TIGR00243 108 LPTLAAIRAGKTIALANK 125 (389)
T ss_pred HHHHHHHHCCCcEEEech
Confidence 368999999999877773
No 258
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=43.20 E-value=2.3e+02 Score=24.87 Aligned_cols=60 Identities=17% Similarity=-0.040 Sum_probs=32.5
Q ss_pred hcCEEEe-cCCCCcchhHHHHHHHcCCeEEecCCCcccccccCCCEEEeCCHHHHHHHHHHHHhCC
Q 016975 213 DYKVFLN-PSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEE 277 (379)
Q Consensus 213 ~~dv~v~-ps~~E~~~~~~~EAma~G~PVI~t~~g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~~~ 277 (379)
..|.+|. +...+ ...+-++...|.|||+-+....+ .....+..++.+....+...++...
T Consensus 64 ~~dgiii~~~~~~--~~~~~~~~~~~ipvV~~~~~~~~---~~~~~V~~d~~~~g~~~a~~l~~~g 124 (275)
T cd06295 64 RADGVILIGQHDQ--DPLPERLAETGLPFVVWGRPLPG---QPYCYVGSDNVGGGRLATEHLLARG 124 (275)
T ss_pred CCCEEEEeCCCCC--hHHHHHHHhCCCCEEEECCccCC---CCCCEEEECcHHHHHHHHHHHHHCC
Confidence 5676554 43222 22355667889999987663322 1222344445655555556666543
No 259
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=43.17 E-value=2.7e+02 Score=25.64 Aligned_cols=121 Identities=15% Similarity=0.126 Sum_probs=70.2
Q ss_pred cceEEEcChh---hhhhhh-ccceeecccCCCCccCccccHH----HhhcCCCCCcceEEEEEecccccCHHHHHHHHHH
Q 016975 94 CHKVIRLSAA---TQEYAN-SIICNVHGVNPKFLEIGKKKKE----QQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDD 165 (379)
Q Consensus 94 ~d~vi~~S~~---~~~~~~-~~i~~i~gvd~~~~~~~~~~~~----~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~ 165 (379)
+|.++.=... ..++.+ ..+.+||+.+.....|...... ....+. -....|.|+|-....+=..-++.++..
T Consensus 96 ~D~iviR~~~~~~~~~~a~~s~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g~-l~g~~va~vGD~~~~~v~~Sl~~~~a~ 174 (301)
T TIGR00670 96 SDAIVIRHPLEGAARLAAEVSEVPVINAGDGSNQHPTQTLLDLYTIYEEFGR-LDGLKIALVGDLKYGRTVHSLAEALTR 174 (301)
T ss_pred CCEEEEECCchhHHHHHHhhCCCCEEeCCCCCCCCcHHHHHHHHHHHHHhCC-CCCCEEEEEccCCCCcHHHHHHHHHHH
Confidence 4777765422 223322 4678889887544555432221 112222 235689999965444445555666654
Q ss_pred hHhhcCCcEEEEEcCCcC--hHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCCC
Q 016975 166 HQKELAGLEVDLYGNGED--FNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTT 223 (379)
Q Consensus 166 l~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~~ 223 (379)
+ ++++.+++.... ..++.+.+++.|..+.+ .++.++.++.+|++...+..
T Consensus 175 ~-----g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~---~~d~~~a~~~aDvvyt~~~~ 226 (301)
T TIGR00670 175 F-----GVEVYLISPEELRMPKEILEELKAKGIKVRE---TESLEEVIDEADVLYVTRIQ 226 (301)
T ss_pred c-----CCEEEEECCccccCCHHHHHHHHHcCCEEEE---ECCHHHHhCCCCEEEECCcc
Confidence 3 588999995332 34555555555555543 35666889999998877643
No 260
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=41.78 E-value=2e+02 Score=24.98 Aligned_cols=80 Identities=16% Similarity=0.056 Sum_probs=46.3
Q ss_pred HHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHH-HHHhhcCEEEecCCCCcchhHHHHHHHcCC
Q 016975 160 LELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD-LIFHDYKVFLNPSTTDVVCTTTAEALAMGK 238 (379)
Q Consensus 160 i~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~-~~~~~~dv~v~ps~~E~~~~~~~EAma~G~ 238 (379)
+++++.+++++|++ ++-+|.--+.++.+. +.+.|-+..+.+..+.+- +.-+..++.+.|.-... .-+.+|+.+|.
T Consensus 54 ~~~I~~l~~~~p~~-~IGAGTVl~~~~a~~-a~~aGA~FivsP~~~~~vi~~a~~~~i~~iPG~~Tp--tEi~~a~~~Ga 129 (212)
T PRK05718 54 LEAIRLIAKEVPEA-LIGAGTVLNPEQLAQ-AIEAGAQFIVSPGLTPPLLKAAQEGPIPLIPGVSTP--SELMLGMELGL 129 (212)
T ss_pred HHHHHHHHHHCCCC-EEEEeeccCHHHHHH-HHHcCCCEEECCCCCHHHHHHHHHcCCCEeCCCCCH--HHHHHHHHCCC
Confidence 45555666667764 455555445555444 334555555555555533 55666677777754322 23777888888
Q ss_pred eEEec
Q 016975 239 IVVCA 243 (379)
Q Consensus 239 PVI~t 243 (379)
.+|--
T Consensus 130 ~~vKl 134 (212)
T PRK05718 130 RTFKF 134 (212)
T ss_pred CEEEE
Confidence 77754
No 261
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=41.68 E-value=2.4e+02 Score=24.53 Aligned_cols=60 Identities=13% Similarity=-0.121 Sum_probs=32.0
Q ss_pred hcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCcccccccCCCEEEeCCHHHHHHHHHHHHhCC
Q 016975 213 DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEE 277 (379)
Q Consensus 213 ~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~~~ 277 (379)
..|.++..+... +....+++..|+|||..+..... .....+..++.+....+...++...
T Consensus 55 ~vdgiii~~~~~--~~~~~~~~~~~ipvv~~~~~~~~---~~~~~v~~d~~~~g~~~~~~l~~~g 114 (267)
T cd06284 55 QADGIILLDGSL--PPTALTALAKLPPIVQACEYIPG---LAVPSVSIDNVAAARLAVDHLISLG 114 (267)
T ss_pred CCCEEEEecCCC--CHHHHHHHhcCCCEEEEecccCC---CCcceEEecccHHHHHHHHHHHHcC
Confidence 457666533221 12256777789999987542211 1112244446666666666666543
No 262
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=41.28 E-value=3.5e+02 Score=26.46 Aligned_cols=111 Identities=16% Similarity=0.114 Sum_probs=64.0
Q ss_pred cccCHHHHHHHHHHhH-hh-cC--------CcEEEEEcCC---cChHHHHHHHHhcCCeeEE-e-cCCCCHH-HHHhhcC
Q 016975 152 WSKGYKELLELLDDHQ-KE-LA--------GLEVDLYGNG---EDFNQIQEAAEKLKIVVRV-Y-PGRDHAD-LIFHDYK 215 (379)
Q Consensus 152 ~~Kg~~~li~a~~~l~-~~-~~--------~~~l~i~G~g---~~~~~l~~~~~~~~l~v~~-~-g~~~~~~-~~~~~~d 215 (379)
...|++..++++-... .. .+ +-.+-|+|.- .+..+++++.++.|+++.. + +...-++ .-+..|.
T Consensus 167 ~~~G~~~a~~al~~~~~~~~~~~~~~~~~~~~~VNiiG~~~~~~d~~el~~lL~~~Gl~v~~~~~~~~s~eei~~~~~A~ 246 (456)
T TIGR01283 167 KNLGNKLACDALLKHVIGTREPEPIPVGTTVHDINLIGEFNVAGEFWHVKPLLEKLGIRVLATITGDSRYAEVQTAHRAK 246 (456)
T ss_pred hhHHHHHHHHHHHHHHhccCCcccccccCCCCcEEEEcCCCCcccHHHHHHHHHHcCCeEEEEeCCCCcHHHHHhcccCc
Confidence 4567776666654332 11 11 2457777742 2467899999999998763 3 3333333 3455555
Q ss_pred EEEecCCCCcchhHHHHHH--HcCCeEEecCCCcccccccCCCEEEeCCHHHHHHHHHHHHhC
Q 016975 216 VFLNPSTTDVVCTTTAEAL--AMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAE 276 (379)
Q Consensus 216 v~v~ps~~E~~~~~~~EAm--a~G~PVI~t~~g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~~ 276 (379)
+-|..+ ...+..+.+.| -+|+|.+.... +-.++.+++...|.+++..
T Consensus 247 lniv~~--~~~~~~~a~~L~e~~GiP~~~~~~------------~G~~~T~~~L~~Ia~~lg~ 295 (456)
T TIGR01283 247 LNMVQC--SKSMINLARKMEEKYGIPYFEGSF------------YGIEDTSKALRDIADLFGD 295 (456)
T ss_pred EEEEEC--HhHHHHHHHHHHHHcCCCEEecCC------------CcHHHHHHHHHHHHHHhCC
Confidence 554433 22445677887 57999986321 0112455677777776653
No 263
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=41.22 E-value=88 Score=23.38 Aligned_cols=39 Identities=13% Similarity=0.150 Sum_probs=24.5
Q ss_pred HHHhhcCEEEecCCCCcchhHHH-HHHHcCCeEEecCCCc
Q 016975 209 LIFHDYKVFLNPSTTDVVCTTTA-EALAMGKIVVCANHPS 247 (379)
Q Consensus 209 ~~~~~~dv~v~ps~~E~~~~~~~-EAma~G~PVI~t~~g~ 247 (379)
+.+..+++++.....+...-.+. +|-+.|+||-+++.+.
T Consensus 56 ~~l~~~~lV~~at~d~~~n~~i~~~a~~~~i~vn~~D~p~ 95 (103)
T PF13241_consen 56 EDLDGADLVFAATDDPELNEAIYADARARGILVNVVDDPE 95 (103)
T ss_dssp GGCTTESEEEE-SS-HHHHHHHHHHHHHTTSEEEETT-CC
T ss_pred HHHhhheEEEecCCCHHHHHHHHHHHhhCCEEEEECCCcC
Confidence 34667787776665555554444 4556999999999855
No 264
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=40.70 E-value=23 Score=23.47 Aligned_cols=15 Identities=40% Similarity=0.472 Sum_probs=13.4
Q ss_pred hHHHHHHHcCCeEEe
Q 016975 228 TTTAEALAMGKIVVC 242 (379)
Q Consensus 228 ~~~~EAma~G~PVI~ 242 (379)
-.+.|++-+|.||+|
T Consensus 15 ~kI~esav~G~pVvA 29 (58)
T PF11238_consen 15 DKIAESAVMGTPVVA 29 (58)
T ss_pred hHHHHHHhcCceeEe
Confidence 358999999999998
No 265
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=40.34 E-value=2.5e+02 Score=24.44 Aligned_cols=47 Identities=17% Similarity=-0.031 Sum_probs=28.8
Q ss_pred HHHHHHcCCeEEecCCCcccccccCCCEEEeCCHHHHHHHHHHHHhCCCC
Q 016975 230 TAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEEPA 279 (379)
Q Consensus 230 ~~EAma~G~PVI~t~~g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~~~~~ 279 (379)
.++++..|.|||.-+....+ .....+..++.+....+...++.....
T Consensus 70 ~~~~~~~~iPvV~i~~~~~~---~~~~~V~~d~~~a~~~~~~~l~~~g~~ 116 (265)
T cd06290 70 EILALAEEIPVLAVGRRVPG---PGAASIAVDNFQGGYLATQHLIDLGHR 116 (265)
T ss_pred HHHHHhcCCCEEEECCCcCC---CCCCEEEECcHHHHHHHHHHHHHCCCC
Confidence 45666779999998763211 112234455777777777777766433
No 266
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=40.32 E-value=2.6e+02 Score=24.57 Aligned_cols=39 Identities=13% Similarity=0.060 Sum_probs=26.4
Q ss_pred HHHHHHHHhcCCcccceeecccCCCCCchHHHHHHhCCC
Q 016975 334 ASAYVHFLASGFETSRRAFGAIPGSLHPDEELCKELGLV 372 (379)
Q Consensus 334 ~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 372 (379)
+...+..++...+....+++..........+.+++.|+.
T Consensus 170 ~~~~~~~~l~~~~~~~aI~~~~d~~a~g~~~al~~~g~~ 208 (271)
T cd06312 170 VASRIAAYLRANPDVDAVLTLGAPSAAPAAKALKQAGLK 208 (271)
T ss_pred HHHHHHHHHHhCCCccEEEEeCCccchHHHHHHHhcCCC
Confidence 444455555444445778877777777778888899886
No 267
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=39.64 E-value=2.5e+02 Score=24.16 Aligned_cols=60 Identities=17% Similarity=0.047 Sum_probs=34.4
Q ss_pred hcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCcccccccCCCEEEeCCHHHHHHHHHHHHhC
Q 016975 213 DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAE 276 (379)
Q Consensus 213 ~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~~ 276 (379)
..|.+|.......-.. +-++...|+|||+.+....+ .....+..++.+....+...+.+.
T Consensus 55 ~~d~iii~~~~~~~~~-~~~~~~~~ipvv~~~~~~~~---~~~~~v~~d~~~~g~~~~~~l~~~ 114 (264)
T cd06267 55 RVDGIILAPSRLDDEL-LEELAALGIPVVLVDRPLDG---LGVDSVGIDNRAGAYLAVEHLIEL 114 (264)
T ss_pred CcCEEEEecCCcchHH-HHHHHHcCCCEEEecccccC---CCCCEEeeccHHHHHHHHHHHHHC
Confidence 4577776554432222 77888999999998875432 222223333555555555555543
No 268
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=39.26 E-value=93 Score=23.36 Aligned_cols=39 Identities=15% Similarity=0.231 Sum_probs=25.4
Q ss_pred HHHHHHhHhhcCCcEEEEEcC-Cc-ChHHHHHHHHhcCCee
Q 016975 160 LELLDDHQKELAGLEVDLYGN-GE-DFNQIQEAAEKLKIVV 198 (379)
Q Consensus 160 i~a~~~l~~~~~~~~l~i~G~-g~-~~~~l~~~~~~~~l~v 198 (379)
...+.++.+.+|+.+|+++|| |. |.+-..+.+++...++
T Consensus 52 ~~~i~~i~~~fP~~kfiLIGDsgq~DpeiY~~ia~~~P~~i 92 (100)
T PF09949_consen 52 RDNIERILRDFPERKFILIGDSGQHDPEIYAEIARRFPGRI 92 (100)
T ss_pred HHHHHHHHHHCCCCcEEEEeeCCCcCHHHHHHHHHHCCCCE
Confidence 455566666689999999996 33 3455566666655443
No 269
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=38.44 E-value=55 Score=24.94 Aligned_cols=41 Identities=27% Similarity=0.224 Sum_probs=28.1
Q ss_pred HHHHHhHhhcCCcEEEEEcCCcC----hHHHHHHHHhcCCeeEEe
Q 016975 161 ELLDDHQKELAGLEVDLYGNGED----FNQIQEAAEKLKIVVRVY 201 (379)
Q Consensus 161 ~a~~~l~~~~~~~~l~i~G~g~~----~~~l~~~~~~~~l~v~~~ 201 (379)
+.+..+....|+..++|+|.|.. ..++.+..++.|+.+.+.
T Consensus 42 ~~l~~l~~~~p~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m 86 (110)
T PF04430_consen 42 EDLEELLELEPKPEVLIIGTGKRQLFLPPELREYLRKKGIGVEVM 86 (110)
T ss_dssp HHHHHHHCTCCS-SEEEEEETTS-SECTHHHHHHHHTTT-EEEEE
T ss_pred HHHHHHHhccCCCcEEEEccCCccccCCHHHHHHHHHcCCeEEEE
Confidence 44444444467888999998876 567888888888877765
No 270
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=38.32 E-value=2.9e+02 Score=24.62 Aligned_cols=34 Identities=15% Similarity=0.249 Sum_probs=20.5
Q ss_pred hcCEEEe-cCCCCcchhHHHHHHHcCCeEEecCCC
Q 016975 213 DYKVFLN-PSTTDVVCTTTAEALAMGKIVVCANHP 246 (379)
Q Consensus 213 ~~dv~v~-ps~~E~~~~~~~EAma~G~PVI~t~~g 246 (379)
..|.++. |...+...-.+-++...|+|||+-+..
T Consensus 55 ~vdgiii~~~~~~~~~~~l~~l~~~~ipvV~~~~~ 89 (288)
T cd01538 55 GVDVLVIAPVDGEALASAVEKAADAGIPVIAYDRL 89 (288)
T ss_pred CCCEEEEecCChhhHHHHHHHHHHCCCCEEEECCC
Confidence 3465554 433333333455677889999998764
No 271
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=37.81 E-value=3.4e+02 Score=26.23 Aligned_cols=96 Identities=13% Similarity=-0.031 Sum_probs=58.8
Q ss_pred eEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcCh-HHHHHHHHhcCCeeE-EecCCCCHH---HHHhh--cC
Q 016975 143 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDF-NQIQEAAEKLKIVVR-VYPGRDHAD---LIFHD--YK 215 (379)
Q Consensus 143 ~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~-~~l~~~~~~~~l~v~-~~g~~~~~~---~~~~~--~d 215 (379)
+-+...+..+-.-. ...+.++++.+|++.+++.-..+.- +..++ ..+..+. .+-.++..- .+++. -|
T Consensus 52 vWiHaaSVGEv~a~---~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~---~~~~~v~h~YlP~D~~~~v~rFl~~~~P~ 125 (419)
T COG1519 52 VWIHAASVGEVLAA---LPLVRALRERFPDLRILVTTMTPTGAERAAA---LFGDSVIHQYLPLDLPIAVRRFLRKWRPK 125 (419)
T ss_pred EEEEecchhHHHHH---HHHHHHHHHhCCCCCEEEEecCccHHHHHHH---HcCCCeEEEecCcCchHHHHHHHHhcCCC
Confidence 45555566655444 4445555667899988887644443 33333 3332222 223344443 44443 37
Q ss_pred EEEecCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 216 VFLNPSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 216 v~v~ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
+.|+. .+|-||+.+.|+-..|+|.+--+-
T Consensus 126 l~Ii~-EtElWPnli~e~~~~~~p~~LvNa 154 (419)
T COG1519 126 LLIIM-ETELWPNLINELKRRGIPLVLVNA 154 (419)
T ss_pred EEEEE-eccccHHHHHHHHHcCCCEEEEee
Confidence 77664 579999999999999999998764
No 272
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=37.76 E-value=3.7e+02 Score=25.71 Aligned_cols=101 Identities=13% Similarity=0.156 Sum_probs=59.4
Q ss_pred cEEEEEcCCcChHHHHHHHHhcCCeeEEecC-CCC-HH--HHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc-
Q 016975 173 LEVDLYGNGEDFNQIQEAAEKLKIVVRVYPG-RDH-AD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS- 247 (379)
Q Consensus 173 ~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~-~~~-~~--~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~- 247 (379)
++++-.+..++..-.+..+.......+++-. -+. .+ ..++++|+.|-.-.+ .++=||+.|+|+|+-....
T Consensus 241 i~~~~~~~s~d~~va~~ia~~~~~~~~i~~~~d~~~~~~~~~l~~~dl~Vg~R~H-----saI~al~~g~p~i~i~Y~~K 315 (385)
T COG2327 241 ITLIDYGASDDLAVADAIAQLVLDSAEILVSSDEYAEELGGILAACDLIVGMRLH-----SAIMALAFGVPAIAIAYDPK 315 (385)
T ss_pred EEeeeccccchhHHHHHHHhhcCCccceEeecchHHHHHHHHhccCceEEeehhH-----HHHHHHhcCCCeEEEeecHH
Confidence 3444445555556566666655533344311 122 22 688999999866543 4778999999999988733
Q ss_pred -ccccccC-CCEEEeC----CHHHHHHHHHHHHhCCC
Q 016975 248 -NDFFKQF-PNCRTYD----DRNGFVEATLKALAEEP 278 (379)
Q Consensus 248 -~e~i~~~-~~g~~~~----~~~~l~~~i~~~l~~~~ 278 (379)
..+..+. ..++..+ |.+.+.+...+.+.+.+
T Consensus 316 ~~~l~~~~gl~~~~~~i~~~~~~~l~~~~~e~~~~~~ 352 (385)
T COG2327 316 VRGLMQDLGLPGFAIDIDPLDAEILSAVVLERLTKLD 352 (385)
T ss_pred HHHHHHHcCCCcccccCCCCchHHHHHHHHHHHhccH
Confidence 2232222 2223333 77788887777666543
No 273
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=37.55 E-value=2.8e+02 Score=24.15 Aligned_cols=41 Identities=10% Similarity=0.046 Sum_probs=24.6
Q ss_pred HHHHHHHHhcCCcccceeecccCCCCCchHHHHHHhCCCCC
Q 016975 334 ASAYVHFLASGFETSRRAFGAIPGSLHPDEELCKELGLVTP 374 (379)
Q Consensus 334 ~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 374 (379)
+...+..++...+....+++..........+.+++.|+..|
T Consensus 160 ~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~al~~~g~~vp 200 (265)
T cd06291 160 KKEEIKELLEEYPDIDGIFASNDLTAILVLKEAQQRGIRVP 200 (265)
T ss_pred HHHHHHHHHhCCCCCCEEEECChHHHHHHHHHHHHcCCCCC
Confidence 34445555655554566666544444456778888888755
No 274
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=37.52 E-value=88 Score=23.67 Aligned_cols=70 Identities=16% Similarity=0.150 Sum_probs=42.2
Q ss_pred EEEEcCCcC----hHHHHHHHHhcCCeeEEe-cCCCCHHHHH--hhcCEEEecCCCCcchhHHHHHH--HcCCeEEecCC
Q 016975 175 VDLYGNGED----FNQIQEAAEKLKIVVRVY-PGRDHADLIF--HDYKVFLNPSTTDVVCTTTAEAL--AMGKIVVCANH 245 (379)
Q Consensus 175 l~i~G~g~~----~~~l~~~~~~~~l~v~~~-g~~~~~~~~~--~~~dv~v~ps~~E~~~~~~~EAm--a~G~PVI~t~~ 245 (379)
++++|.|-. ...+++.+++.|+++.+. ......+... ..+|+++..... .|=..=++.. ..|+||...+.
T Consensus 5 LlvCg~G~STSlla~k~k~~~~e~gi~~~i~a~~~~e~~~~~~~~~~DvIll~PQi-~~~~~~i~~~~~~~~ipv~~I~~ 83 (104)
T PRK09590 5 LIICAAGMSSSMMAKKTTEYLKEQGKDIEVDAITATEGEKAIAAAEYDLYLVSPQT-KMYFKQFEEAGAKVGKPVVQIPP 83 (104)
T ss_pred EEECCCchHHHHHHHHHHHHHHHCCCceEEEEecHHHHHHhhccCCCCEEEEChHH-HHHHHHHHHHhhhcCCCEEEeCH
Confidence 788888776 345677788888876664 3333333333 358988877532 1222223333 47899988654
No 275
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=37.43 E-value=2.9e+02 Score=24.44 Aligned_cols=61 Identities=21% Similarity=0.061 Sum_probs=34.0
Q ss_pred hhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCcccccccCCCEEEeCCHHHHHHHHHHHHhCC
Q 016975 212 HDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEE 277 (379)
Q Consensus 212 ~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~~~ 277 (379)
..+|-++..+..... -.+-++...|+|||+-+.+.. .....+..++.+....+...+++..
T Consensus 55 ~~~dgiii~~~~~~~-~~~~~~~~~~ipvV~~~~~~~----~~~~~v~~d~~~~g~~~~~~L~~~g 115 (283)
T cd06279 55 ALVDGFIVYGVPRDD-PLVAALLRRGLPVVVVDQPLP----PGVPSVGIDDRAAAREAARHLLDLG 115 (283)
T ss_pred cCCCEEEEeCCCCCh-HHHHHHHHcCCCEEEEecCCC----CCCCEEeeCcHHHHHHHHHHHHHcC
Confidence 344655543332211 245667789999999876432 1122344446666666666666643
No 276
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=37.17 E-value=2.6e+02 Score=25.15 Aligned_cols=71 Identities=15% Similarity=0.137 Sum_probs=47.0
Q ss_pred CCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCC
Q 016975 171 AGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHP 246 (379)
Q Consensus 171 ~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g 246 (379)
+++++..+-+. +.+..++.+++.+. .....+.++++..+|+++..+......-...+++..|++|++...+
T Consensus 30 ~~~el~aV~dr-~~~~a~~~a~~~g~----~~~~~~~eell~~~D~Vvi~tp~~~h~e~~~~aL~aGk~Vi~~s~g 100 (271)
T PRK13302 30 PGLTLSAVAVR-DPQRHADFIWGLRR----PPPVVPLDQLATHADIVVEAAPASVLRAIVEPVLAAGKKAIVLSVG 100 (271)
T ss_pred CCeEEEEEECC-CHHHHHHHHHhcCC----CcccCCHHHHhcCCCEEEECCCcHHHHHHHHHHHHcCCcEEEecch
Confidence 56777655443 33444555554441 1123556678888999998887776666678889999999986544
No 277
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=37.12 E-value=1.1e+02 Score=26.47 Aligned_cols=100 Identities=17% Similarity=0.146 Sum_probs=56.3
Q ss_pred cceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcC--hHHHHHHHHhcCC--eeEEecCCCCHHHHHhhcCE
Q 016975 141 AKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED--FNQIQEAAEKLKI--VVRVYPGRDHADLIFHDYKV 216 (379)
Q Consensus 141 ~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~l--~v~~~g~~~~~~~~~~~~dv 216 (379)
..+++++|.= .+|=|-++ +...+....-++.++..|+... .+......+.++. .+.+.... .....+|+
T Consensus 50 ~~v~vlcG~G--nNGGDG~V-aAR~L~~~G~~V~v~~~~~~~~~~~~~a~~~~~~l~~~~~v~~~~~~----~~~~~~dv 122 (203)
T COG0062 50 RRVLVLCGPG--NNGGDGLV-AARHLKAAGYAVTVLLLGDPKKLKTEAARANLKSLGIGGVVKIKELE----DEPESADV 122 (203)
T ss_pred CEEEEEECCC--CccHHHHH-HHHHHHhCCCceEEEEeCCCCCccHHHHHHHHHhhcCCcceeecccc----cccccCCE
Confidence 3467777753 45555555 4555666556788888886553 3333333333332 12222111 14667777
Q ss_pred EEec--------CCCCcchhHHHHHHHcCCeEEecCCCc
Q 016975 217 FLNP--------STTDVVCTTTAEALAMGKIVVCANHPS 247 (379)
Q Consensus 217 ~v~p--------s~~E~~~~~~~EAma~G~PVI~t~~g~ 247 (379)
.|=. ...|.+...+-..=+.|+|||+-|+|+
T Consensus 123 IVDalfG~G~~g~lrep~a~~Ie~iN~~~~pivAVDiPS 161 (203)
T COG0062 123 IVDALFGTGLSGPLREPFASLIEAINASGKPIVAVDIPS 161 (203)
T ss_pred EEEeceecCCCCCCccHHHHHHHHHHhcCCceEEEeCCC
Confidence 7632 234555544444446999999999954
No 278
>CHL00067 rps2 ribosomal protein S2
Probab=36.60 E-value=3e+02 Score=24.22 Aligned_cols=30 Identities=10% Similarity=0.103 Sum_probs=21.2
Q ss_pred CEEEecCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 215 KVFLNPSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 215 dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
|+.+.....+. ..++.||.-+|+|||+--+
T Consensus 163 ~~iiv~d~~~~-~~ai~Ea~~l~IPvIaivD 192 (230)
T CHL00067 163 DIVIIIDQQEE-YTALRECRKLGIPTISILD 192 (230)
T ss_pred CEEEEeCCccc-HHHHHHHHHcCCCEEEEEe
Confidence 55555443322 2789999999999998655
No 279
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=36.09 E-value=3e+02 Score=24.06 Aligned_cols=60 Identities=18% Similarity=0.065 Sum_probs=33.3
Q ss_pred hcCEEEecCCC-CcchhHHHHHHHcCCeEEecCCCcccccccCCCEEEeCCHHHHHHHHHHHHh
Q 016975 213 DYKVFLNPSTT-DVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALA 275 (379)
Q Consensus 213 ~~dv~v~ps~~-E~~~~~~~EAma~G~PVI~t~~g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~ 275 (379)
..|.+|..+.. +...-.+-++-..|+|||+.+....+ ..-..+..++.+....+...+++
T Consensus 55 ~vdgii~~~~~~~~~~~~i~~~~~~~ipvV~~~~~~~~---~~~~~V~~d~~~~g~~~~~~l~~ 115 (273)
T cd06305 55 KVDAIIIQHGRAEVLKPWVKRALDAGIPVVAFDVDSDN---PKVNNTTQDDYSLARLSLDQLVK 115 (273)
T ss_pred CCCEEEEecCChhhhHHHHHHHHHcCCCEEEecCCCCC---CccceeeechHHHHHHHHHHHHH
Confidence 45777664432 22333355677889999998874322 11122444455555555555555
No 280
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=35.32 E-value=1.2e+02 Score=23.40 Aligned_cols=72 Identities=10% Similarity=0.031 Sum_probs=41.1
Q ss_pred EEEEEcCCcCh---HHHHHHHHhcCCeeEEecCCCCHH---HHHhhcCEEEecCCCCc---chhHHHHHHHcCCeEEecC
Q 016975 174 EVDLYGNGEDF---NQIQEAAEKLKIVVRVYPGRDHAD---LIFHDYKVFLNPSTTDV---VCTTTAEALAMGKIVVCAN 244 (379)
Q Consensus 174 ~l~i~G~g~~~---~~l~~~~~~~~l~v~~~g~~~~~~---~~~~~~dv~v~ps~~E~---~~~~~~EAma~G~PVI~t~ 244 (379)
++.++|.|... ..+.......+.++.+........ ..+..-|+++.-|..-. .--.+-.|-..|+|||+--
T Consensus 2 ~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT 81 (128)
T cd05014 2 KVVVTGVGKSGHIARKIAATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIAIT 81 (128)
T ss_pred eEEEEeCcHhHHHHHHHHHHhhcCCCceEEcccchhhccccCcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEe
Confidence 46788877653 334444444565655553221111 33456699998886522 2233455667799998866
Q ss_pred C
Q 016975 245 H 245 (379)
Q Consensus 245 ~ 245 (379)
.
T Consensus 82 ~ 82 (128)
T cd05014 82 G 82 (128)
T ss_pred C
Confidence 6
No 281
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=35.31 E-value=3.1e+02 Score=24.02 Aligned_cols=42 Identities=19% Similarity=0.051 Sum_probs=26.9
Q ss_pred HHHHHHHHHhcCCcccceeecccCCCCCchHHHHHHhCCCCC
Q 016975 333 EASAYVHFLASGFETSRRAFGAIPGSLHPDEELCKELGLVTP 374 (379)
Q Consensus 333 ~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 374 (379)
.+.+.+..++...+....+|+.......-.-+.+++.|+..|
T Consensus 169 ~~~~~~~~~l~~~~~~~av~~~~d~~a~g~~~al~~~g~~~p 210 (273)
T cd01541 169 KLFEKIKEILKRPERPTAIVCYNDEIALRVIDLLKELGLKIP 210 (273)
T ss_pred HHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCC
Confidence 344455555655454677777666655556677888898665
No 282
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=34.95 E-value=2.1e+02 Score=24.19 Aligned_cols=97 Identities=14% Similarity=0.047 Sum_probs=45.3
Q ss_pred eEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChH-HHHHHHHhcCCeeEEecCCCCHH---HHHhhc--CE
Q 016975 143 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFN-QIQEAAEKLKIVVRVYPGRDHAD---LIFHDY--KV 216 (379)
Q Consensus 143 ~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~-~l~~~~~~~~l~v~~~g~~~~~~---~~~~~~--dv 216 (379)
+-++..+.++-.- +...++.+++++|+.++++-...+.-. ..++.... ...+. +-..|... .+++.- |+
T Consensus 24 iWiHa~SvGE~~a---~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~-~v~~~-~~P~D~~~~~~rfl~~~~P~~ 98 (186)
T PF04413_consen 24 IWIHAASVGEVNA---ARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPD-RVDVQ-YLPLDFPWAVRRFLDHWRPDL 98 (186)
T ss_dssp EEEE-SSHHHHHH---HHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GG-G-SEE-E---SSHHHHHHHHHHH--SE
T ss_pred EEEEECCHHHHHH---HHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCC-CeEEE-EeCccCHHHHHHHHHHhCCCE
Confidence 4555556555443 444555556678899999988655533 33333222 22322 33455544 555554 77
Q ss_pred EEecCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 217 FLNPSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 217 ~v~ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
+|.- ..|-+|+-+.+|-..|+|++.-+-
T Consensus 99 ~i~~-EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 99 LIWV-ETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp EEEE-S----HHHHHH-----S-EEEEEE
T ss_pred EEEE-ccccCHHHHHHHhhcCCCEEEEee
Confidence 7765 468899999999999999998764
No 283
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=34.63 E-value=3.5e+02 Score=25.25 Aligned_cols=30 Identities=17% Similarity=0.083 Sum_probs=20.9
Q ss_pred CEEEecCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 215 KVFLNPSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 215 dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
|+.|..... .--.++.||.-+|+|||+--.
T Consensus 154 d~viv~d~~-~e~~AI~EA~kl~IPvIaivD 183 (326)
T PRK12311 154 DLLFVIDTN-KEDIAIQEAQRLGIPVAAIVD 183 (326)
T ss_pred CEEEEeCCc-cchHHHHHHHHcCCCEEEEee
Confidence 555544332 225689999999999998655
No 284
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=34.59 E-value=1.8e+02 Score=27.85 Aligned_cols=77 Identities=18% Similarity=0.194 Sum_probs=55.3
Q ss_pred CCcEEEEEcCCcChHHHHHHHHhcCCeeEEecC----------CCCHHHHHhhcCEEE--ecCCCC----cc---hhHHH
Q 016975 171 AGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPG----------RDHADLIFHDYKVFL--NPSTTD----VV---CTTTA 231 (379)
Q Consensus 171 ~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~----------~~~~~~~~~~~dv~v--~ps~~E----~~---~~~~~ 231 (379)
.+-++-|+|-|.--..+.+.++.+|.++..+.. ...-+++++.||+++ .|-..+ +. +-..+
T Consensus 115 ~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l 194 (378)
T PRK15438 115 HDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLI 194 (378)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHH
Confidence 467899999988877888888888888766521 112238999999998 454433 43 34678
Q ss_pred HHHHcCCeEEecCCCc
Q 016975 232 EALAMGKIVVCANHPS 247 (379)
Q Consensus 232 EAma~G~PVI~t~~g~ 247 (379)
++|.-|.-+|-+.-|.
T Consensus 195 ~~mk~gailIN~aRG~ 210 (378)
T PRK15438 195 RSLKPGAILINACRGA 210 (378)
T ss_pred hcCCCCcEEEECCCch
Confidence 8888888888877765
No 285
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=34.51 E-value=3.1e+02 Score=27.60 Aligned_cols=98 Identities=11% Similarity=-0.027 Sum_probs=58.1
Q ss_pred HHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCC
Q 016975 159 LLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGK 238 (379)
Q Consensus 159 li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~ 238 (379)
+++++...++. .-++-++|.......++....-+++++..+.....++ .-..+.++.+.|.
T Consensus 96 il~al~~a~~~--~~~iavv~~~~~~~~~~~~~~~l~~~i~~~~~~~~~e-----------------~~~~v~~lk~~G~ 156 (538)
T PRK15424 96 VMQALARARKL--TSSIGVVTYQETIPALVAFQKTFNLRIEQRSYVTEED-----------------ARGQINELKANGI 156 (538)
T ss_pred HHHHHHHHHhc--CCcEEEEecCcccHHHHHHHHHhCCceEEEEecCHHH-----------------HHHHHHHHHHCCC
Confidence 45666555432 2356677765555666666655555555444333333 2334677778888
Q ss_pred eEEecCC-CcccccccCCCEEEeCCHHHHHHHHHHHHh
Q 016975 239 IVVCANH-PSNDFFKQFPNCRTYDDRNGFVEATLKALA 275 (379)
Q Consensus 239 PVI~t~~-g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~ 275 (379)
-||.-+. ....-..-+.+|.+.-+.+++.+++.+++.
T Consensus 157 ~~vvG~~~~~~~A~~~g~~g~~~~s~e~i~~a~~~A~~ 194 (538)
T PRK15424 157 EAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFEDALD 194 (538)
T ss_pred CEEEcCchHHHHHHHhCCceEEecCHHHHHHHHHHHHH
Confidence 7777665 333344455667655567888888887765
No 286
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=34.43 E-value=3.5e+02 Score=24.39 Aligned_cols=99 Identities=10% Similarity=0.062 Sum_probs=60.9
Q ss_pred EEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcC-----------CcC---hHHHHHHHHhcCCeeEEec-CCCCHH
Q 016975 144 AYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGN-----------GED---FNQIQEAAEKLKIVVRVYP-GRDHAD 208 (379)
Q Consensus 144 il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~-----------g~~---~~~l~~~~~~~~l~v~~~g-~~~~~~ 208 (379)
++.++....-...+.+++.++.+++. ..+++..|. |.. ...+++..++.|+.+--.. ...+.+
T Consensus 28 ~~~iaGPCsie~~~~~~~~A~~lk~~--g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~~d~~~~~ 105 (266)
T PRK13398 28 KIIIAGPCAVESEEQMVKVAEKLKEL--GVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTEVMDTRDVE 105 (266)
T ss_pred EEEEEeCCcCCCHHHHHHHHHHHHHc--CCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEeeCChhhHH
Confidence 55555555566788899999988875 455666661 111 3456677777777532221 112222
Q ss_pred HHHhhcCEEEecCCC-CcchhHHHHHHHcCCeEEecCC
Q 016975 209 LIFHDYKVFLNPSTT-DVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 209 ~~~~~~dv~v~ps~~-E~~~~~~~EAma~G~PVI~t~~ 245 (379)
.+...+|++-.+|.. +.++ -+-++...|+||+.++-
T Consensus 106 ~l~~~vd~~kIga~~~~n~~-LL~~~a~~gkPV~lk~G 142 (266)
T PRK13398 106 EVADYADMLQIGSRNMQNFE-LLKEVGKTKKPILLKRG 142 (266)
T ss_pred HHHHhCCEEEECcccccCHH-HHHHHhcCCCcEEEeCC
Confidence 333447999999864 4433 24455678999998876
No 287
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=34.32 E-value=1.6e+02 Score=23.06 Aligned_cols=46 Identities=26% Similarity=0.217 Sum_probs=28.6
Q ss_pred EEEEcCC----cChHHHHHHHHhcCCeeE---------------Ee---cCCCCHH--HHHhhcCEEEec
Q 016975 175 VDLYGNG----EDFNQIQEAAEKLKIVVR---------------VY---PGRDHAD--LIFHDYKVFLNP 220 (379)
Q Consensus 175 l~i~G~g----~~~~~l~~~~~~~~l~v~---------------~~---g~~~~~~--~~~~~~dv~v~p 220 (379)
++++|.| ...+++.+++++++..+- +. |...+.. +++..||+.|.-
T Consensus 15 ~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~i 84 (137)
T PF00205_consen 15 VILAGRGARRSGAAEELRELAEKLGIPVATTPMGKGVIPEDHPLFLGYLGLFGSPAANEALEQADLVLAI 84 (137)
T ss_dssp EEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEEESCGGSCHHHHHHHHHSSEEEEE
T ss_pred EEEEcCCcChhhHHHHHHHHHHHHCCCEEecCccccccCCCCchhcccCCccCCHHHHHHhcCCCEEEEE
Confidence 6677743 336777777777776542 22 2223344 889999999874
No 288
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=34.31 E-value=2.2e+02 Score=26.99 Aligned_cols=92 Identities=20% Similarity=0.159 Sum_probs=58.8
Q ss_pred cccCHHHHHHHHHHhHhh------cCCcEEEEEcCCc----ChHHHHHHHHhcCCeeEEecCC-CC-HH-HHHhhcCEEE
Q 016975 152 WSKGYKELLELLDDHQKE------LAGLEVDLYGNGE----DFNQIQEAAEKLKIVVRVYPGR-DH-AD-LIFHDYKVFL 218 (379)
Q Consensus 152 ~~Kg~~~li~a~~~l~~~------~~~~~l~i~G~g~----~~~~l~~~~~~~~l~v~~~g~~-~~-~~-~~~~~~dv~v 218 (379)
...|++..+.++.+.... ..+-.+.++|..+ +..+++++.++.|+++...... .. ++ .-+..|.+-|
T Consensus 126 ~~~G~~~a~~~~~~~~~~~~~~~~~~~~~vNlig~~~~~~~d~~el~~ll~~~G~~v~~~~~~~~s~~~i~~~~~A~~nl 205 (399)
T cd00316 126 QSAGYDAAVKAIIDHLVGTAEPEETEPGSVNLIGGYNLGGGDLRELKRLLEEMGIRVNALFDGGTTVEELRELGNAKLNL 205 (399)
T ss_pred HHHHHHHHHHHHHHHHhcccCcCCCCCCcEEEECCCCCchhhHHHHHHHHHHcCCcEEEEcCCCCCHHHHHhhccCcEEE
Confidence 456787777776654321 1234577888433 6789999999999988766333 33 33 4445555555
Q ss_pred ecCCCCcchhHHHHHHH--cCCeEEecCC
Q 016975 219 NPSTTDVVCTTTAEALA--MGKIVVCANH 245 (379)
Q Consensus 219 ~ps~~E~~~~~~~EAma--~G~PVI~t~~ 245 (379)
..+. -+|..+.|.|. +|.|-+....
T Consensus 206 v~~~--~~g~~~a~~l~~~~g~p~~~~~p 232 (399)
T cd00316 206 VLCR--ESGLYLARYLEEKYGIPYILINP 232 (399)
T ss_pred EecH--hHHHHHHHHHHHHhCCCeEEeCC
Confidence 5543 25666777774 8999888663
No 289
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=34.28 E-value=3e+02 Score=26.13 Aligned_cols=72 Identities=17% Similarity=0.140 Sum_probs=42.1
Q ss_pred CCc-EEEEEcCCcChHHHHHHHHh-cCCeeEEe-cCCCCHH---HHHhhcCEEEecCCCCcchhHHHH-HHHcCCeEEec
Q 016975 171 AGL-EVDLYGNGEDFNQIQEAAEK-LKIVVRVY-PGRDHAD---LIFHDYKVFLNPSTTDVVCTTTAE-ALAMGKIVVCA 243 (379)
Q Consensus 171 ~~~-~l~i~G~g~~~~~l~~~~~~-~~l~v~~~-g~~~~~~---~~~~~~dv~v~ps~~E~~~~~~~E-Ama~G~PVI~t 243 (379)
.+. +++++|- +.+.+++..++ .+.++... -.+.+.+ ++++.+|++|+.+-.- ++..+++ |+.+|++.|-+
T Consensus 21 ~~~~~v~va~r--~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-~~~~v~~~~i~~g~~yvD~ 97 (386)
T PF03435_consen 21 GPFEEVTVADR--NPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-FGEPVARACIEAGVHYVDT 97 (386)
T ss_dssp TCE-EEEEEES--SHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG-GHHHHHHHHHHHT-EEEES
T ss_pred CCCCcEEEEEC--CHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc-hhHHHHHHHHHhCCCeecc
Confidence 444 6777764 33455555544 33355444 4455544 8999999999987433 5665555 57889999996
Q ss_pred CC
Q 016975 244 NH 245 (379)
Q Consensus 244 ~~ 245 (379)
..
T Consensus 98 ~~ 99 (386)
T PF03435_consen 98 SY 99 (386)
T ss_dssp S-
T ss_pred ch
Confidence 43
No 290
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=34.19 E-value=4.2e+02 Score=25.29 Aligned_cols=112 Identities=19% Similarity=0.166 Sum_probs=64.6
Q ss_pred ccccCHHHHHHHHHHhHhh------cCCcEEEEEcC---CcChHHHHHHHHhcCCeeEE-ec-CCCCHH-HHHhhcCEEE
Q 016975 151 VWSKGYKELLELLDDHQKE------LAGLEVDLYGN---GEDFNQIQEAAEKLKIVVRV-YP-GRDHAD-LIFHDYKVFL 218 (379)
Q Consensus 151 ~~~Kg~~~li~a~~~l~~~------~~~~~l~i~G~---g~~~~~l~~~~~~~~l~v~~-~g-~~~~~~-~~~~~~dv~v 218 (379)
+...|++..++++...... .++-.+-|+|. ..+..+++++.++.|+++.. ++ ...-++ .-+..|.+-|
T Consensus 133 ~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gi~~~~~~~~~~~~~~i~~~~~A~~ni 212 (406)
T cd01967 133 SQSLGHHIANDAILDHLVGTKEPEEKTPYDVNIIGEYNIGGDAWVIKPLLEELGIRVNATFTGDGTVDELRRAHRAKLNL 212 (406)
T ss_pred cccHHHHHHHHHHHHHhcCCCCcCCCCCCeEEEEeccccchhHHHHHHHHHHcCCEEEEEeCCCCCHHHHhhCccCCEEE
Confidence 3556788777776544311 12345777775 23578899999999997654 33 333333 3455555555
Q ss_pred ecCCCCcchhHHHHHH--HcCCeEEecCCCcccccccCCCEEEeCCHHHHHHHHHHHHhC
Q 016975 219 NPSTTDVVCTTTAEAL--AMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAE 276 (379)
Q Consensus 219 ~ps~~E~~~~~~~EAm--a~G~PVI~t~~g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~~ 276 (379)
..+. .++..+.+.| ..|.|.+.... +-.++.+++.+.|.+++..
T Consensus 213 v~~~--~~~~~~a~~L~~r~GiP~~~~~p------------~G~~~t~~~l~~l~~~lg~ 258 (406)
T cd01967 213 VHCS--RSMNYLAREMEERYGIPYMEVNF------------YGFEDTSESLRKIAKFFGD 258 (406)
T ss_pred EECh--HHHHHHHHHHHHhhCCCEEEecC------------CcHHHHHHHHHHHHHHhCC
Confidence 4432 2345555555 37999986321 0112456677777776553
No 291
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=33.85 E-value=1.7e+02 Score=26.91 Aligned_cols=67 Identities=18% Similarity=0.256 Sum_probs=45.7
Q ss_pred EEEEcC-CcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhc--CEEEecCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 175 VDLYGN-GEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDY--KVFLNPSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 175 l~i~G~-g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~--dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
+.++|- ..+.+..++.+++.+.. -...+.+++++.- |+++..+....-.=.+..|+..|++|+|=..
T Consensus 30 ~~~vav~d~~~~~a~~~a~~~~~~----~~~~~~~~ll~~~~iD~V~Iatp~~~H~e~~~~AL~aGkhVl~EKP 99 (342)
T COG0673 30 LELVAVVDRDPERAEAFAEEFGIA----KAYTDLEELLADPDIDAVYIATPNALHAELALAALEAGKHVLCEKP 99 (342)
T ss_pred eEEEEEecCCHHHHHHHHHHcCCC----cccCCHHHHhcCCCCCEEEEcCCChhhHHHHHHHHhcCCEEEEcCC
Confidence 444442 34456677788877755 2334555777764 8888887765555556999999999999665
No 292
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=33.70 E-value=3.3e+02 Score=24.84 Aligned_cols=150 Identities=15% Similarity=0.032 Sum_probs=75.1
Q ss_pred hhcCE-EEecCCCCcchhHHHHHHHcCCeEEecCCCcccccccCCCEEEe-CCH---HHHHHHHHHHHhCCCC-CCcHHH
Q 016975 212 HDYKV-FLNPSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTY-DDR---NGFVEATLKALAEEPA-LPTEAQ 285 (379)
Q Consensus 212 ~~~dv-~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~~e~i~~~~~g~~~-~~~---~~l~~~i~~~l~~~~~-~~~~~~ 285 (379)
+..|. .|.|...+.+.-.+-+|...|+|||+-+...... .....++. +|. ...++.+.+.+..... -.....
T Consensus 90 ~~~daIiv~~~d~~~~~~~v~~a~~aGIpVv~~d~~~~~~--~~~~~~vg~dn~~~G~~~a~~l~~~~~~~g~v~~~~g~ 167 (322)
T COG1879 90 QGVDAIIINPVDPDALTPAVKKAKAAGIPVVTVDSDIPGP--GDRVAYVGSDNYKAGRLAAEYLAKALGGKGKVVVLVGS 167 (322)
T ss_pred cCCCEEEEcCCChhhhHHHHHHHHHCCCcEEEEecCCCCC--CceeEEEecCcHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 33444 5567777889999999999999999999855332 22233443 322 2234445554444321 000000
Q ss_pred HhcCCHHHHHHHHHHHHhcccccccCCCCCCCccccccchhHHHhHHHHHHHHHHHhcCCcccceeecccCCCCCchHHH
Q 016975 286 RHQLSWESATERFLQVAELDQAVVKKPSKSPSKHFASTSLNLKKNMEEASAYVHFLASGFETSRRAFGAIPGSLHPDEEL 365 (379)
Q Consensus 286 ~~~~sw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 365 (379)
....+...-.+-+.+.+........ ......-+...+.+...+..++...+.+..+++...+.-.-.-+.
T Consensus 168 ~~~~~~~~R~~G~~~~l~~~~~~~~----------v~~~~~~~~~~~~a~~~~~~~L~~~pdi~~i~~~~d~~a~ga~~A 237 (322)
T COG1879 168 PGNSSAEERVKGFRDALKEHPPDIE----------VVDVQTGDWDRDKALEVMEDLLAANPDIDGIYAANDGMALGAIQA 237 (322)
T ss_pred CCCchHHHHHhhHHHHHHhCCCcEE----------EeeccCCcccHHHHHHHHHHHHHhCCCceEEEECCchhHHHHHHH
Confidence 0112222233333333332110000 000001122344677777777877777777777766644333355
Q ss_pred HHHhCCCC
Q 016975 366 CKELGLVT 373 (379)
Q Consensus 366 ~~~~~~~~ 373 (379)
+++.|...
T Consensus 238 ~~~~g~~~ 245 (322)
T COG1879 238 LKAAGRKG 245 (322)
T ss_pred HHHcCCCC
Confidence 55666543
No 293
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=33.43 E-value=3.2e+02 Score=23.73 Aligned_cols=144 Identities=10% Similarity=-0.017 Sum_probs=69.0
Q ss_pred cCEEEecCCCCcchhHHHHHHHcCCeEEecCCCcccccccCCCEEEeCCHHHHHHHHHHHHhCCCCCCcH-HHHhcCCHH
Q 016975 214 YKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEEPALPTE-AQRHQLSWE 292 (379)
Q Consensus 214 ~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~~~~~~~~~-~~~~~~sw~ 292 (379)
+|.+|..+..... ...++...|.|||.-+....+ .....+..++.+....+...++.....++.- .......-.
T Consensus 56 ~dgiii~~~~~~~--~~~~~~~~~iPvV~~~~~~~~---~~~~~v~~d~~~~g~~a~~~L~~~g~~~i~~~~~~~~~~~~ 130 (263)
T cd06280 56 VTGVIFAPTRATL--RRLAELRLSFPVVLIDRAGPA---GRVDAVVLDNRAAARTLVEHLVAQGYRRIGGLFGNASTTGA 130 (263)
T ss_pred CCEEEEeCCCCCc--hHHHHHhcCCCEEEECCCCCC---CCCCEEEECcHHHHHHHHHHHHHCCCceEEEEeCCCCCCHH
Confidence 4655443322222 245666789999998763221 1123355567777777777766654332211 011111111
Q ss_pred HHHHHHHHHHhcccccccCCCCCCCccccccchhHHHhHHHHHHHHHHHhcCCcccceeecccCCCCCchHHHHHHhCCC
Q 016975 293 SATERFLQVAELDQAVVKKPSKSPSKHFASTSLNLKKNMEEASAYVHFLASGFETSRRAFGAIPGSLHPDEELCKELGLV 372 (379)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 372 (379)
.-.+-|.+.++. ...... ... .....+.+...+..++...+....+|...........+.+++.|+.
T Consensus 131 ~R~~gf~~~~~~----~~~~~~-------~~~--~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~ 197 (263)
T cd06280 131 ERRAGYEDAMRR----HGLAPD-------ARF--VAPTAEAAEAALAAWLAAPERPEALVASNGLLLLGALRAVRAAGLR 197 (263)
T ss_pred HHHHHHHHHHHH----cCCCCC-------hhh--cccCHHHHHHHHHHHhcCCCCCcEEEECCcHHHHHHHHHHHHcCCC
Confidence 122223333331 110000 000 0111234455556666544445677776666555677889999996
Q ss_pred CCC
Q 016975 373 TPM 375 (379)
Q Consensus 373 ~~~ 375 (379)
.|+
T Consensus 198 ~p~ 200 (263)
T cd06280 198 IPQ 200 (263)
T ss_pred CCC
Confidence 663
No 294
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=33.35 E-value=3.4e+02 Score=23.92 Aligned_cols=39 Identities=13% Similarity=0.045 Sum_probs=23.3
Q ss_pred HHHHHHHHHhcCCcccceeecccCCCCCchHHHHHHhCC
Q 016975 333 EASAYVHFLASGFETSRRAFGAIPGSLHPDEELCKELGL 371 (379)
Q Consensus 333 ~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 371 (379)
.+...+..++...+....+|+.....-....+.+++.|+
T Consensus 169 ~~~~~~~~~l~~~~~~~ai~~~nd~~a~g~~~al~~~g~ 207 (272)
T cd06313 169 KAARIWETWLTKYPQLDGAFCHNDSMALAAYQIMKAAGR 207 (272)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCcHHHHHHHHHHHcCC
Confidence 344455555554444566776655555556677777776
No 295
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=32.69 E-value=1.1e+02 Score=21.91 Aligned_cols=50 Identities=24% Similarity=0.246 Sum_probs=33.8
Q ss_pred EEEEcCCcC-----hHHHHHHHHhcCCeeEEe-cCCCCHHHHHhhcCEEEecCCCC
Q 016975 175 VDLYGNGED-----FNQIQEAAEKLKIVVRVY-PGRDHADLIFHDYKVFLNPSTTD 224 (379)
Q Consensus 175 l~i~G~g~~-----~~~l~~~~~~~~l~v~~~-g~~~~~~~~~~~~dv~v~ps~~E 224 (379)
++++|.|-. ...+++.+++.|+.+... +.....+.....+|+++......
T Consensus 3 lvvC~~Gi~TS~~~~~~i~~~~~~~gi~~~~~~~~~~~~~~~~~~~D~il~~~~i~ 58 (90)
T PF02302_consen 3 LVVCGSGIGTSLMVANKIKKALKELGIEVEVSAGSILEVEEIADDADLILLTPQIA 58 (90)
T ss_dssp EEEESSSSHHHHHHHHHHHHHHHHTTECEEEEEEETTTHHHHHTT-SEEEEEESSG
T ss_pred EEECCChHHHHHHHHHHHHHHHHhccCceEEEEecccccccccCCCcEEEEcCccc
Confidence 678888765 356778888888766655 33344446777799999876544
No 296
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=32.59 E-value=4.2e+02 Score=24.82 Aligned_cols=98 Identities=16% Similarity=0.103 Sum_probs=57.5
Q ss_pred EEEEEecccccCHHHHHHHHHHhHhhcCCcEEEE-------------EcCCcC-hHHHHHHHHhcCCeeEEecCCCCHH-
Q 016975 144 AYYIGKMVWSKGYKELLELLDDHQKELAGLEVDL-------------YGNGED-FNQIQEAAEKLKIVVRVYPGRDHAD- 208 (379)
Q Consensus 144 il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i-------------~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~- 208 (379)
+++++....-..-+.+++.++.+++...+ +.. -|-|.. ...+.+.+++.|+.+-- .-.+...
T Consensus 94 ~~~IAGPCsiEs~e~~~~~A~~lk~~ga~--~~r~~~fKpRTsp~sf~G~g~~gL~~L~~~~~~~Gl~v~t-ev~d~~~~ 170 (335)
T PRK08673 94 PVVIAGPCSVESEEQILEIARAVKEAGAQ--ILRGGAFKPRTSPYSFQGLGEEGLKLLAEAREETGLPIVT-EVMDPRDV 170 (335)
T ss_pred eEEEEecCccCCHHHHHHHHHHHHHhchh--hccCcEecCCCCCcccccccHHHHHHHHHHHHHcCCcEEE-eeCCHHHH
Confidence 33444455566778888888887765432 222 222222 34566667777775322 2222222
Q ss_pred -HHHhhcCEEEecCCC-CcchhHHHHHHHcCCeEEecCC
Q 016975 209 -LIFHDYKVFLNPSTT-DVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 209 -~~~~~~dv~v~ps~~-E~~~~~~~EAma~G~PVI~t~~ 245 (379)
.+...+|++-.+|.. ..+. -+-++...|+||+.++-
T Consensus 171 ~~l~~~vd~lqIgAr~~~N~~-LL~~va~~~kPViLk~G 208 (335)
T PRK08673 171 ELVAEYVDILQIGARNMQNFD-LLKEVGKTNKPVLLKRG 208 (335)
T ss_pred HHHHHhCCeEEECcccccCHH-HHHHHHcCCCcEEEeCC
Confidence 344557999999864 4444 24566678999999876
No 297
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=32.39 E-value=2.2e+02 Score=23.16 Aligned_cols=91 Identities=18% Similarity=0.108 Sum_probs=56.9
Q ss_pred cCHHHHHHHHHHhHhhc-CCcEEEEEcCCcC-hHHHHHHHHhcCC-eeEEe--cCCC--CHH-------HHHhh--cCEE
Q 016975 154 KGYKELLELLDDHQKEL-AGLEVDLYGNGED-FNQIQEAAEKLKI-VVRVY--PGRD--HAD-------LIFHD--YKVF 217 (379)
Q Consensus 154 Kg~~~li~a~~~l~~~~-~~~~l~i~G~g~~-~~~l~~~~~~~~l-~v~~~--g~~~--~~~-------~~~~~--~dv~ 217 (379)
+--.+++.+..++.+.. ..+..+++|+.+. .+.+++.....|. ++... .... +++ ++++. .|++
T Consensus 15 ~~~~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~~G~d~v~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~lV 94 (164)
T PF01012_consen 15 PVSLEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAKYGADKVYHIDDPALAEYDPEAYADALAELIKEEGPDLV 94 (164)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHSTTESEEEEEE-GGGTTC-HHHHHHHHHHHHHHHT-SEE
T ss_pred HHHHHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhhcCCcEEEEecCccccccCHHHHHHHHHHHHHhcCCCEE
Confidence 33446777777776543 3588888996454 4556666666776 34433 2222 222 55555 5999
Q ss_pred EecCCCCcchhHHHHHHHcCCeEEecC
Q 016975 218 LNPSTTDVVCTTTAEALAMGKIVVCAN 244 (379)
Q Consensus 218 v~ps~~E~~~~~~~EAma~G~PVI~t~ 244 (379)
++|+...+-.+.-.=|...|.|+++--
T Consensus 95 l~~~t~~g~~la~~lA~~L~~~~v~~v 121 (164)
T PF01012_consen 95 LFGSTSFGRDLAPRLAARLGAPLVTDV 121 (164)
T ss_dssp EEESSHHHHHHHHHHHHHHT-EEEEEE
T ss_pred EEcCcCCCCcHHHHHHHHhCCCccceE
Confidence 999988777777777888888887643
No 298
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=32.24 E-value=3.8e+02 Score=24.16 Aligned_cols=42 Identities=19% Similarity=0.067 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCCcccceeecccCCCCCchHHHHHHhCCCCC
Q 016975 333 EASAYVHFLASGFETSRRAFGAIPGSLHPDEELCKELGLVTP 374 (379)
Q Consensus 333 ~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 374 (379)
.+...+..++...+....+|+..........+.+++.|+..|
T Consensus 188 ~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vp 229 (305)
T cd06324 188 EAYEQAENLLKRYPDVRLIWAANDQMAFGALRAAKEAGRKPG 229 (305)
T ss_pred HHHHHHHHHHHHCCCccEEEECCchHHHHHHHHHHHcCCCcC
Confidence 344555566655555677777655555567788999999766
No 299
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=32.00 E-value=1.5e+02 Score=27.66 Aligned_cols=115 Identities=14% Similarity=0.117 Sum_probs=66.7
Q ss_pred ccCHHHHHHHHHHhHh-hc--CCcEEEEEc----CCcC----hHH---HHH---HHHhcCCeeEEecCCCCHH----HHH
Q 016975 153 SKGYKELLELLDDHQK-EL--AGLEVDLYG----NGED----FNQ---IQE---AAEKLKIVVRVYPGRDHAD----LIF 211 (379)
Q Consensus 153 ~Kg~~~li~a~~~l~~-~~--~~~~l~i~G----~g~~----~~~---l~~---~~~~~~l~v~~~g~~~~~~----~~~ 211 (379)
.+++...++.+.+..+ .. ++-++-++| .|+. .++ +.- .+++.| +.+.|.++.+. ...
T Consensus 173 ~~~i~~~i~~~~~~l~~~~gi~~PrIaV~gLNPHAGE~G~~G~EE~~iI~PAI~~~~~~G--~~v~GP~paDt~F~~~~~ 250 (320)
T TIGR00557 173 PELLVEKLRILHADLRRDFGIARPRIAVAGLNPHAGEGGHLGREEIDIIIPALEALRAEG--IDLIGPLPADTLFHPAAL 250 (320)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHHHCC--CcccCCCCchhhcccccc
Confidence 4555555555554443 22 456788888 2221 222 222 223334 45668887777 555
Q ss_pred hhcCEEEecCCCCc-chhHHHHH-----HHcCCeEEecCC--Cc-ccccccCCCEEEeCCHHHHHHHHHHHH
Q 016975 212 HDYKVFLNPSTTDV-VCTTTAEA-----LAMGKIVVCANH--PS-NDFFKQFPNCRTYDDRNGFVEATLKAL 274 (379)
Q Consensus 212 ~~~dv~v~ps~~E~-~~~~~~EA-----ma~G~PVI~t~~--g~-~e~i~~~~~g~~~~~~~~l~~~i~~~l 274 (379)
..+|++|-..+.-| -|++++.. +..|+|+|-|.. |. .++...+ ..|+.++.+||..+.
T Consensus 251 ~~~D~vvaMYHDQGliP~K~l~F~~gVNvTlGLPiiRTS~DHGTAfDIAGkg-----~A~~~S~~~Ai~~A~ 317 (320)
T TIGR00557 251 AKYDAVLAMYHDQGLIPLKYLGFDEGVNVTLGLPFIRTSPDHGTAFDIAGKG-----KADPGSLIAAIKLAI 317 (320)
T ss_pred cCCCEEEECcccccchhheecccCcceEEecCCCeeEeCCCCcchhhhhcCC-----CCCHHHHHHHHHHHH
Confidence 66799987755433 24444422 357999998877 65 5554443 238889999988764
No 300
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=31.84 E-value=2.4e+02 Score=24.16 Aligned_cols=79 Identities=24% Similarity=0.200 Sum_probs=44.1
Q ss_pred HHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHH-HHHhhcCEEEecCCCCcchhHHHHHHHcCC
Q 016975 160 LELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD-LIFHDYKVFLNPSTTDVVCTTTAEALAMGK 238 (379)
Q Consensus 160 i~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~-~~~~~~dv~v~ps~~E~~~~~~~EAma~G~ 238 (379)
+++++.+++++|++ ++=+|.--+.++.++.. +.|-+..+-+.++.+- ++-+..++.+.|.-. .+.=+.+|+.+|.
T Consensus 47 ~~~I~~l~~~~p~~-~vGAGTV~~~e~a~~a~-~aGA~FivSP~~~~~v~~~~~~~~i~~iPG~~--TptEi~~A~~~G~ 122 (196)
T PF01081_consen 47 LEAIEALRKEFPDL-LVGAGTVLTAEQAEAAI-AAGAQFIVSPGFDPEVIEYAREYGIPYIPGVM--TPTEIMQALEAGA 122 (196)
T ss_dssp HHHHHHHHHHHTTS-EEEEES--SHHHHHHHH-HHT-SEEEESS--HHHHHHHHHHTSEEEEEES--SHHHHHHHHHTT-
T ss_pred HHHHHHHHHHCCCC-eeEEEeccCHHHHHHHH-HcCCCEEECCCCCHHHHHHHHHcCCcccCCcC--CHHHHHHHHHCCC
Confidence 45555566667875 44555656666665543 4454555555544443 677777888887432 2344777888888
Q ss_pred eEEe
Q 016975 239 IVVC 242 (379)
Q Consensus 239 PVI~ 242 (379)
.+|=
T Consensus 123 ~~vK 126 (196)
T PF01081_consen 123 DIVK 126 (196)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 7763
No 301
>PLN02929 NADH kinase
Probab=31.67 E-value=2.1e+02 Score=26.36 Aligned_cols=91 Identities=10% Similarity=0.030 Sum_probs=52.6
Q ss_pred HHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCcc----------cccccC
Q 016975 185 NQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSN----------DFFKQF 254 (379)
Q Consensus 185 ~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~~----------e~i~~~ 254 (379)
+.+++..++.+.++...-..+. ......+|+.|.-- -+|.=+...-.+..++||+.-+.|.. ++=..+
T Consensus 37 ~~~~~~L~~~gi~~~~v~r~~~-~~~~~~~Dlvi~lG-GDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r 114 (301)
T PLN02929 37 NFCKDILQQKSVDWECVLRNEL-SQPIRDVDLVVAVG-GDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFDARR 114 (301)
T ss_pred HHHHHHHHHcCCEEEEeecccc-ccccCCCCEEEEEC-CcHHHHHHHHHcCCCCcEEEEECCCccccccccccccccccc
Confidence 3445555555555433221111 23345667776542 23332233333456799999988731 111123
Q ss_pred CCEEEeC-CHHHHHHHHHHHHhCC
Q 016975 255 PNCRTYD-DRNGFVEATLKALAEE 277 (379)
Q Consensus 255 ~~g~~~~-~~~~l~~~i~~~l~~~ 277 (379)
..|++.+ +++++.+++.++++..
T Consensus 115 ~lGfL~~~~~~~~~~~L~~il~g~ 138 (301)
T PLN02929 115 STGHLCAATAEDFEQVLDDVLFGR 138 (301)
T ss_pred CccccccCCHHHHHHHHHHHHcCC
Confidence 5789999 9999999999998864
No 302
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=31.65 E-value=63 Score=24.57 Aligned_cols=41 Identities=12% Similarity=0.079 Sum_probs=28.1
Q ss_pred HHHhhcCEEEecCCC----CcchhHHHHHHHcCCeEEecCCCccc
Q 016975 209 LIFHDYKVFLNPSTT----DVVCTTTAEALAMGKIVVCANHPSND 249 (379)
Q Consensus 209 ~~~~~~dv~v~ps~~----E~~~~~~~EAma~G~PVI~t~~g~~e 249 (379)
..++.||++|..-.. .|.+.=+-=|.+.|+||++-......
T Consensus 57 ~~i~~~D~via~l~~~~~d~Gt~~ElG~A~algkpv~~~~~d~~~ 101 (113)
T PF05014_consen 57 EGIRECDIVIANLDGFRPDSGTAFELGYAYALGKPVILLTEDDRP 101 (113)
T ss_dssp HHHHHSSEEEEEECSSS--HHHHHHHHHHHHTTSEEEEEECCCCT
T ss_pred HHHHHCCEEEEECCCCCCCCcHHHHHHHHHHCCCEEEEEEcCCcc
Confidence 788999999865332 23333345578999999997775433
No 303
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=31.61 E-value=79 Score=27.68 Aligned_cols=72 Identities=17% Similarity=0.218 Sum_probs=38.1
Q ss_pred EecccccC-HHHHHHHHHHhHhhcCCcEEEEEcC--CcChHH---HHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecC
Q 016975 148 GKMVWSKG-YKELLELLDDHQKELAGLEVDLYGN--GEDFNQ---IQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPS 221 (379)
Q Consensus 148 grl~~~Kg-~~~li~a~~~l~~~~~~~~l~i~G~--g~~~~~---l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps 221 (379)
-.++|.|- .+...+.++.++....+ .+++|. |-..+. +-+.+++..+.+.+++ .+...+-..+|.+++||
T Consensus 4 ~liDPdK~~~~~~~~~~~~~~~~gtd--ai~vGGS~~vt~~~~~~~v~~ik~~~lPvilfp--~~~~~i~~~aDa~l~~s 79 (223)
T TIGR01768 4 TLIDPDKTNPSEADEIAKAAAESGTD--AILIGGSQGVTYEKTDTLIEALRRYGLPIILFP--SNPTNVSRDADALFFPS 79 (223)
T ss_pred eeECCCCCCccccHHHHHHHHhcCCC--EEEEcCCCcccHHHHHHHHHHHhccCCCEEEeC--CCccccCcCCCEEEEEE
Confidence 34556552 22333455555555434 455553 233333 3344556666666543 22334557799999998
Q ss_pred CC
Q 016975 222 TT 223 (379)
Q Consensus 222 ~~ 223 (379)
..
T Consensus 80 vl 81 (223)
T TIGR01768 80 VL 81 (223)
T ss_pred ee
Confidence 54
No 304
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=31.55 E-value=3.2e+02 Score=23.11 Aligned_cols=60 Identities=10% Similarity=0.060 Sum_probs=39.5
Q ss_pred hHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCCCC-----------cchhHHHHHHHcCCeEEecCCCc
Q 016975 184 FNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTD-----------VVCTTTAEALAMGKIVVCANHPS 247 (379)
Q Consensus 184 ~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~~E-----------~~~~~~~EAma~G~PVI~t~~g~ 247 (379)
...+.+..+.++..+.+.. +.++ +..+|.+|+|.-.+ ++.-.+.++...|+||+.+-.|.
T Consensus 12 ~~~~~~~l~~~g~~v~~~~---~~~~-l~~~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~G~ 82 (199)
T PRK13181 12 LRSVANALKRLGVEAVVSS---DPEE-IAGADKVILPGVGAFGQAMRSLRESGLDEALKEHVEKKQPVLGICLGM 82 (199)
T ss_pred HHHHHHHHHHCCCcEEEEc---ChHH-hccCCEEEECCCCCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECHhH
Confidence 3555566677777766662 2223 46788888886322 23445778888999999987764
No 305
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=31.43 E-value=3.4e+02 Score=23.40 Aligned_cols=58 Identities=16% Similarity=-0.020 Sum_probs=30.7
Q ss_pred hcCEEEecCCCCcchhHHHH-HHHcCCeEEecCCCcccccccCCCEEEeCCHHHHHHHHHHHHhCC
Q 016975 213 DYKVFLNPSTTDVVCTTTAE-ALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEE 277 (379)
Q Consensus 213 ~~dv~v~ps~~E~~~~~~~E-Ama~G~PVI~t~~g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~~~ 277 (379)
..|.+|..+... ...+++ +...|+|||..+.... ....+..++.+....+...+++..
T Consensus 55 ~~dgii~~~~~~--~~~~~~~~~~~~ipvv~~~~~~~-----~~~~v~~d~~~~~~~~~~~l~~~g 113 (259)
T cd01542 55 KVDGIILLATTI--TDEHREAIKKLNVPVVVVGQDYP-----GISSVVYDDYGAGYELGEYLAQQG 113 (259)
T ss_pred CCCEEEEeCCCC--CHHHHHHHhcCCCCEEEEeccCC-----CCCEEEECcHHHHHHHHHHHHHcC
Confidence 457666644322 123333 3456999999875321 222344445555555666666543
No 306
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=31.41 E-value=3.7e+02 Score=24.50 Aligned_cols=33 Identities=9% Similarity=0.164 Sum_probs=20.3
Q ss_pred HHHhhcCEEEecCCCCcchhHHHHHHHcCCeEE
Q 016975 209 LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVV 241 (379)
Q Consensus 209 ~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI 241 (379)
+++..+|++++.....-++-..++.|.-|.-+|
T Consensus 205 ~~l~~aDiVint~P~~ii~~~~l~~~k~~aliI 237 (287)
T TIGR02853 205 EKVAEIDIVINTIPALVLTADVLSKLPKHAVII 237 (287)
T ss_pred HHhccCCEEEECCChHHhCHHHHhcCCCCeEEE
Confidence 678899999987643323334555565555444
No 307
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=31.41 E-value=2.4e+02 Score=26.57 Aligned_cols=73 Identities=7% Similarity=-0.073 Sum_probs=47.1
Q ss_pred eEEecCCCCHH----HHH--------hhcCEEEecCCCCc-chhHHHHH-----HHcCCeEEecCC--Cc-ccccccCCC
Q 016975 198 VRVYPGRDHAD----LIF--------HDYKVFLNPSTTDV-VCTTTAEA-----LAMGKIVVCANH--PS-NDFFKQFPN 256 (379)
Q Consensus 198 v~~~g~~~~~~----~~~--------~~~dv~v~ps~~E~-~~~~~~EA-----ma~G~PVI~t~~--g~-~e~i~~~~~ 256 (379)
+.+.|.++.+. ... ..+|++|-..+.-| .+++++.. +..|+|+|-|.. |. .++...+
T Consensus 245 ~~v~GP~paDt~F~~~~~~~~~~~~~~~~D~vvaMYHDQGliP~K~l~F~~gVNvTlGLP~iRTS~DHGTAfDIAGkg-- 322 (345)
T PRK02746 245 IQLLGPIPPDTCWVSPAQAWYGKGVAEAPDGYLALYHDQGLIPVKLMAFDRAVNTTIGLPFIRTSPDHGTAFDIAGKG-- 322 (345)
T ss_pred ceeeCCCCchhhccccccccccccccCCCCEEEECcccCCChhheeeccCcceEEecCCCeeEeCCCCcchhhhhcCC--
Confidence 67889887777 222 56899987655432 23333322 357999998876 65 5555443
Q ss_pred EEEeCCHHHHHHHHHHHHh
Q 016975 257 CRTYDDRNGFVEATLKALA 275 (379)
Q Consensus 257 g~~~~~~~~l~~~i~~~l~ 275 (379)
..|+.++.+||..+..
T Consensus 323 ---~A~~~S~~~Ai~lA~~ 338 (345)
T PRK02746 323 ---IARPQSMKAAIKLAWE 338 (345)
T ss_pred ---CCCHHHHHHHHHHHHH
Confidence 2389999999887643
No 308
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=31.18 E-value=1.9e+02 Score=24.09 Aligned_cols=74 Identities=14% Similarity=0.152 Sum_probs=38.0
Q ss_pred cEEEEEcCCcChHHHHHHHHhcCCeeEEecCC--------------CCHHHHHhhcCEEEe--cCCCCc---chhHHHHH
Q 016975 173 LEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGR--------------DHADLIFHDYKVFLN--PSTTDV---VCTTTAEA 233 (379)
Q Consensus 173 ~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~--------------~~~~~~~~~~dv~v~--ps~~E~---~~~~~~EA 233 (379)
-++.|+|-|.--..+-+.++.+|.+|..+... ...+++++.||++++ |...++ ++-..++.
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~ 116 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGVEYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAK 116 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHT
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccceeeehhhhcchhhhhhhhhccccccceeeeeeeeec
Confidence 44555555554444444455555544444221 222378888888875 333333 44456666
Q ss_pred HHcCCeEEecCCC
Q 016975 234 LAMGKIVVCANHP 246 (379)
Q Consensus 234 ma~G~PVI~t~~g 246 (379)
|--|.-+|-+.-|
T Consensus 117 mk~ga~lvN~aRG 129 (178)
T PF02826_consen 117 MKPGAVLVNVARG 129 (178)
T ss_dssp STTTEEEEESSSG
T ss_pred cccceEEEeccch
Confidence 6666666655544
No 309
>PLN02527 aspartate carbamoyltransferase
Probab=30.94 E-value=4.3e+02 Score=24.37 Aligned_cols=121 Identities=7% Similarity=-0.000 Sum_probs=69.6
Q ss_pred cceEEEcChh---hhhhhh-ccceeecccCCCCccCccccHHH----hhcCCCCCcceEEEEEecccccCHHHHHHHHHH
Q 016975 94 CHKVIRLSAA---TQEYAN-SIICNVHGVNPKFLEIGKKKKEQ----QQNGTHAFAKGAYYIGKMVWSKGYKELLELLDD 165 (379)
Q Consensus 94 ~d~vi~~S~~---~~~~~~-~~i~~i~gvd~~~~~~~~~~~~~----~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~ 165 (379)
+|.++.=... ..++.+ ..+.+||+-+.+...|....... ...+. -+...|.++|-....+=...++.++..
T Consensus 97 ~D~iviR~~~~~~~~~~a~~~~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g~-l~g~kva~vGD~~~~rv~~Sl~~~~~~ 175 (306)
T PLN02527 97 SDIIVLRHFESGAARRAAATAEIPVINAGDGPGQHPTQALLDVYTIQREIGR-LDGIKVGLVGDLANGRTVRSLAYLLAK 175 (306)
T ss_pred CcEEEEECCChhHHHHHHHhCCCCEEECCCCCCCChHHHHHHHHHHHHHhCC-cCCCEEEEECCCCCChhHHHHHHHHHh
Confidence 4777665522 223332 46788898774445554322211 12222 234689999966433335556666543
Q ss_pred hHhhcCCcEEEEEcCCcC--hHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCC
Q 016975 166 HQKELAGLEVDLYGNGED--FNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPST 222 (379)
Q Consensus 166 l~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~ 222 (379)
..++.+.+++.... ..++.+.+++.|.++.+. ++.++.++.+|++.....
T Consensus 176 ----~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~---~d~~~a~~~aDvvyt~~~ 227 (306)
T PLN02527 176 ----YEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEES---SDLMEVASKCDVLYQTRI 227 (306)
T ss_pred ----cCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEE---cCHHHHhCCCCEEEECCc
Confidence 35688999985332 345555565555554433 556688999999887654
No 310
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=30.27 E-value=4.1e+02 Score=25.42 Aligned_cols=99 Identities=14% Similarity=-0.002 Sum_probs=55.4
Q ss_pred ceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHH---HHHhhc--CE
Q 016975 142 KGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD---LIFHDY--KV 216 (379)
Q Consensus 142 ~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~---~~~~~~--dv 216 (379)
.+-+..++... ...+...++.+.+.+|++++++.-..+.-.++.+.....+..+.+. ..+... .+++.- |+
T Consensus 52 ~iW~Ha~s~Ge---~~~~~~l~~~l~~~~~~~~i~~t~~t~~~~~~~~~~~~~~~~~~~~-P~d~~~~~~~~l~~~~Pd~ 127 (425)
T PRK05749 52 LIWFHAVSVGE---TRAAIPLIRALRKRYPDLPILVTTMTPTGSERAQALFGDDVEHRYL-PYDLPGAVRRFLRFWRPKL 127 (425)
T ss_pred eEEEEeCCHHH---HHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHhcCCCceEEEe-cCCcHHHHHHHHHhhCCCE
Confidence 35566667664 4445555556666678887766543332222222211112233333 233333 455443 88
Q ss_pred EEecCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 217 FLNPSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 217 ~v~ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
++.- ..|-++..+..+-..|+|+|.++.
T Consensus 128 v~~~-~~~~~~~~l~~~~~~~ip~vl~~~ 155 (425)
T PRK05749 128 VIIM-ETELWPNLIAELKRRGIPLVLANA 155 (425)
T ss_pred EEEE-ecchhHHHHHHHHHCCCCEEEEec
Confidence 7654 347788888888889999998754
No 311
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=30.13 E-value=1.8e+02 Score=27.24 Aligned_cols=73 Identities=15% Similarity=0.045 Sum_probs=47.4
Q ss_pred eEEecCCCCHH----HHHhhcCEEEecCCCCc-chhHHHHH-----HHcCCeEEecCC--Cc-ccccccCCCEEEeCCHH
Q 016975 198 VRVYPGRDHAD----LIFHDYKVFLNPSTTDV-VCTTTAEA-----LAMGKIVVCANH--PS-NDFFKQFPNCRTYDDRN 264 (379)
Q Consensus 198 v~~~g~~~~~~----~~~~~~dv~v~ps~~E~-~~~~~~EA-----ma~G~PVI~t~~--g~-~e~i~~~~~g~~~~~~~ 264 (379)
+.+.|.++.+. ..+..+|++|-..+.-| -|++++.. +-.|+|+|-|.. |. .++...+ ..|+.
T Consensus 240 ~~v~GP~paDt~F~~~~~~~~D~vvaMYHDQGliP~K~l~F~~gVNvTlGLP~iRTS~DHGTAfDIAGkg-----~A~~~ 314 (332)
T PRK03743 240 INVEGPVPADSVFHLALQGRYDAVLSLYHDQGHIATKTLDFERTIAITNGLPFLRTSVDHGTAFDIAGTG-----KASSV 314 (332)
T ss_pred CcccCCCCchhhcccccccCCCEEEEcccccCChhheecccCCceEEecCCCeeEeCCCCcchhhhhcCC-----CCCHH
Confidence 44578887777 55566899987655433 23333322 356999998877 65 5555443 24899
Q ss_pred HHHHHHHHHHh
Q 016975 265 GFVEATLKALA 275 (379)
Q Consensus 265 ~l~~~i~~~l~ 275 (379)
++.+||..+..
T Consensus 315 S~~~Ai~lA~~ 325 (332)
T PRK03743 315 SMEEAILLAAK 325 (332)
T ss_pred HHHHHHHHHHH
Confidence 99999887643
No 312
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=29.83 E-value=1.4e+02 Score=26.52 Aligned_cols=34 Identities=15% Similarity=0.167 Sum_probs=23.6
Q ss_pred HHHHHHhHhhc--CCcEEEEEcCCcChHHHHHHHHhcCC
Q 016975 160 LELLDDHQKEL--AGLEVDLYGNGEDFNQIQEAAEKLKI 196 (379)
Q Consensus 160 i~a~~~l~~~~--~~~~l~i~G~g~~~~~l~~~~~~~~l 196 (379)
.+.++.+++++ |++.++++|+|.+.++ .++.++.
T Consensus 216 ~~cFe~I~~Rfg~p~~~f~~IGDG~eEe~---aAk~l~w 251 (274)
T TIGR01658 216 LQCFKWIKERFGHPKVRFCAIGDGWEECT---AAQAMNW 251 (274)
T ss_pred HHHHHHHHHHhCCCCceEEEeCCChhHHH---HHHhcCC
Confidence 35677776554 5899999999998554 3445554
No 313
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=29.68 E-value=2.2e+02 Score=25.37 Aligned_cols=18 Identities=28% Similarity=0.209 Sum_probs=15.5
Q ss_pred hHHHHHHHcCCeEEecCC
Q 016975 228 TTTAEALAMGKIVVCANH 245 (379)
Q Consensus 228 ~~~~EAma~G~PVI~t~~ 245 (379)
.++.||--.|+|||+--.
T Consensus 170 iAv~EA~klgIPVvAlvD 187 (252)
T COG0052 170 IAVKEANKLGIPVVALVD 187 (252)
T ss_pred HHHHHHHHcCCCEEEEec
Confidence 579999999999999554
No 314
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=29.47 E-value=2.9e+02 Score=21.96 Aligned_cols=65 Identities=17% Similarity=0.246 Sum_probs=39.1
Q ss_pred eEEEEEecccccCHHHHHHHHHHhHhh-cCCcEEEEEcCC----cChHHHHHHHHhcCCeeEEecCCCCHH
Q 016975 143 GAYYIGKMVWSKGYKELLELLDDHQKE-LAGLEVDLYGNG----EDFNQIQEAAEKLKIVVRVYPGRDHAD 208 (379)
Q Consensus 143 ~il~vgrl~~~Kg~~~li~a~~~l~~~-~~~~~l~i~G~g----~~~~~l~~~~~~~~l~v~~~g~~~~~~ 208 (379)
.++.++.+.. .....+-+.+..+++. .+++.+.+.|.. .+..+..+..+++|....|.++.+-++
T Consensus 56 d~V~lS~~~~-~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~ 125 (137)
T PRK02261 56 DAILVSSLYG-HGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEE 125 (137)
T ss_pred CEEEEcCccc-cCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHH
Confidence 4666765543 4555666666777665 347766666642 225666677888886545555555444
No 315
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=29.29 E-value=4.4e+02 Score=23.92 Aligned_cols=64 Identities=6% Similarity=-0.017 Sum_probs=35.7
Q ss_pred hcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCcccccccCCCEEEeCCHHHHHHHHHHHHhCCCC
Q 016975 213 DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEEPA 279 (379)
Q Consensus 213 ~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~~~~~ 279 (379)
..|.+|..+......-.+-+....|+|||.-+..... ....++..+|......+...++.....
T Consensus 117 ~vdgiIi~~~~~~~~~~~~~l~~~~iPvV~v~~~~~~---~~~~~V~~d~~~~~~~a~~~L~~~G~r 180 (328)
T PRK11303 117 QVDALIVSTSLPPEHPFYQRLQNDGLPIIALDRALDR---EHFTSVVSDDQDDAEMLAESLLKFPAE 180 (328)
T ss_pred CCCEEEEcCCCCCChHHHHHHHhcCCCEEEECCCCCC---CCCCEEEeCCHHHHHHHHHHHHHCCCC
Confidence 3465555432211111244556789999998763211 112346666777777777777775433
No 316
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=29.01 E-value=1.8e+02 Score=19.35 Aligned_cols=66 Identities=17% Similarity=0.093 Sum_probs=40.8
Q ss_pred CCcEEEEEc--CCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecC
Q 016975 171 AGLEVDLYG--NGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCAN 244 (379)
Q Consensus 171 ~~~~l~i~G--~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~ 244 (379)
.++.+.+.| .....+.+.+++...|-.+.... +.. .+..+|..+.. ........|...|+|||...
T Consensus 4 ~g~~~~~~g~~~~~~~~~l~~~i~~~Gg~~~~~~--~~~-----~~thvi~~~~~-~~~~~~~~~~~~~~~iV~~~ 71 (80)
T smart00292 4 KGKVFVITGKFDKNERDELKELIEALGGKVTSSL--SSK-----TTTHVIVGSPE-GGKLELLLAIALGIPIVTED 71 (80)
T ss_pred CCeEEEEeCCCCCccHHHHHHHHHHcCCEEeccc--Ccc-----ceeEEEEcCCC-CccHHHHHHHHcCCCCccHH
Confidence 467888888 45568888998888876543211 100 45556655432 22222678888999988753
No 317
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=29.00 E-value=1.7e+02 Score=26.25 Aligned_cols=42 Identities=19% Similarity=0.140 Sum_probs=31.7
Q ss_pred CHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc
Q 016975 206 HADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS 247 (379)
Q Consensus 206 ~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~ 247 (379)
+.+++...+|++|--|..+..--.+..|+..|+|||+...|.
T Consensus 61 d~~~l~~~~DvVIdfT~p~~~~~~~~~al~~g~~vVigttg~ 102 (266)
T TIGR00036 61 DLEAVETDPDVLIDFTTPEGVLNHLKFALEHGVRLVVGTTGF 102 (266)
T ss_pred CHHHhcCCCCEEEECCChHHHHHHHHHHHHCCCCEEEECCCC
Confidence 333443457999988877777778999999999999865553
No 318
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=28.96 E-value=1.9e+02 Score=26.54 Aligned_cols=70 Identities=13% Similarity=0.131 Sum_probs=35.7
Q ss_pred CcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCC-----------------CHHHHHhhcCEEEecCCCCcchhHHHHHH
Q 016975 172 GLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRD-----------------HADLIFHDYKVFLNPSTTDVVCTTTAEAL 234 (379)
Q Consensus 172 ~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~-----------------~~~~~~~~~dv~v~ps~~E~~~~~~~EAm 234 (379)
+-++.|+|.|.--..+....+.+|.++.+....+ ...++++.+|+.+++.-.....-..++.|
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~~i~~~~l~~~ 231 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPALVLTKEVLSKM 231 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChhhhhHHHHHcC
Confidence 4566666766654444455555555554442221 11266788899998753211112233344
Q ss_pred HcCCeEE
Q 016975 235 AMGKIVV 241 (379)
Q Consensus 235 a~G~PVI 241 (379)
.-|.-+|
T Consensus 232 ~~g~vII 238 (296)
T PRK08306 232 PPEALII 238 (296)
T ss_pred CCCcEEE
Confidence 5554444
No 319
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=28.84 E-value=3.6e+02 Score=22.83 Aligned_cols=112 Identities=8% Similarity=0.062 Sum_probs=61.8
Q ss_pred cccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeE---Eec------CCCCHH---HHHhhcCEEEe
Q 016975 152 WSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVR---VYP------GRDHAD---LIFHDYKVFLN 219 (379)
Q Consensus 152 ~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~---~~g------~~~~~~---~~~~~~dv~v~ 219 (379)
...|...+++.+.+ + ++++.|+-++.. ..+....+..++.-. +++ ..++++ .+++... +.
T Consensus 83 ~~~g~~~~l~~L~~---~--g~~~~i~S~~~~-~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~--~~ 154 (214)
T PRK13288 83 EYETVYETLKTLKK---Q--GYKLGIVTTKMR-DTVEMGLKLTGLDEFFDVVITLDDVEHAKPDPEPVLKALELLG--AK 154 (214)
T ss_pred cCcCHHHHHHHHHH---C--CCeEEEEeCCCH-HHHHHHHHHcCChhceeEEEecCcCCCCCCCcHHHHHHHHHcC--CC
Confidence 45777666666643 2 577777766553 455555666666321 222 123444 3333322 23
Q ss_pred cCC---CCcchhHHHHHHHcCCeEEecCCCc--ccccccCCCEEEeCCHHHHHHHHH
Q 016975 220 PST---TDVVCTTTAEALAMGKIVVCANHPS--NDFFKQFPNCRTYDDRNGFVEATL 271 (379)
Q Consensus 220 ps~---~E~~~~~~~EAma~G~PVI~t~~g~--~e~i~~~~~g~~~~~~~~l~~~i~ 271 (379)
|+. .+....=+.-|.++|+++|.-..|. .+.+.....-+++++..++.+.+.
T Consensus 155 ~~~~~~iGDs~~Di~aa~~aG~~~i~v~~g~~~~~~l~~~~~~~~i~~~~~l~~~i~ 211 (214)
T PRK13288 155 PEEALMVGDNHHDILAGKNAGTKTAGVAWTIKGREYLEQYKPDFMLDKMSDLLAIVG 211 (214)
T ss_pred HHHEEEECCCHHHHHHHHHCCCeEEEEcCCCCCHHHHhhcCcCEEECCHHHHHHHHh
Confidence 321 1222345777889999999766542 333333334477889888877654
No 320
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=28.80 E-value=1.6e+02 Score=27.76 Aligned_cols=95 Identities=17% Similarity=0.106 Sum_probs=56.5
Q ss_pred cEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhc---CEEEecCCCCcchhHH--HHHHHcCCeEEecCC-C
Q 016975 173 LEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDY---KVFLNPSTTDVVCTTT--AEALAMGKIVVCANH-P 246 (379)
Q Consensus 173 ~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~---dv~v~ps~~E~~~~~~--~EAma~G~PVI~t~~-g 246 (379)
=.|+|+|+. ..++.++-+.+..+-+.|+++-.++..+.| ++=|+.|.+++|-.+. .-|++-- -|-.+. -
T Consensus 115 g~LlIVGnR---~~iq~lAL~~~~AVLvTGGF~~s~evi~lAne~~lPvlstsYDTFTVAtmIN~Al~n~--lIKkdI~~ 189 (432)
T COG4109 115 GGLLIVGNR---EDIQLLALENGNAVLVTGGFDVSDEVIKLANEKGLPVLSTSYDTFTVATMINKALSNQ--LIKKDIIT 189 (432)
T ss_pred CceEEEecH---HHHHHHHHhcCCeEEEeCCCCccHHHHHhhcccCCceEEecccceeHHHHHHHHHHHh--hhhhheee
Confidence 359999984 556667777777888889987777555555 6777778888886653 3444322 233333 1
Q ss_pred ccccccc-CCCEEEeC--CHHHHHHHHHH
Q 016975 247 SNDFFKQ-FPNCRTYD--DRNGFVEATLK 272 (379)
Q Consensus 247 ~~e~i~~-~~~g~~~~--~~~~l~~~i~~ 272 (379)
..+++.. ...+++.+ ..+++.+-..+
T Consensus 190 Vedi~~P~~~~~yL~~~d~v~d~~~l~~k 218 (432)
T COG4109 190 VEDIMTPLEDTSYLRETDTVEDWLDLVEK 218 (432)
T ss_pred HHHhccccccceeccccccHHHHHHHHHH
Confidence 1333331 23456655 55666555444
No 321
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=28.58 E-value=4.3e+02 Score=25.59 Aligned_cols=92 Identities=16% Similarity=0.181 Sum_probs=54.8
Q ss_pred cccCHHHHHHHHHH-hHhh---cCCcEEEEEcC----CcChHHHHHHHHhcCCeeEEecCC-------------------
Q 016975 152 WSKGYKELLELLDD-HQKE---LAGLEVDLYGN----GEDFNQIQEAAEKLKIVVRVYPGR------------------- 204 (379)
Q Consensus 152 ~~Kg~~~li~a~~~-l~~~---~~~~~l~i~G~----g~~~~~l~~~~~~~~l~v~~~g~~------------------- 204 (379)
...|++..++++-+ +... ..+-.+.++|. ..+..+++++.++.|+++......
T Consensus 131 ~~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~~~~~s~~~d~~~~~~~~~~~~gg 210 (428)
T cd01965 131 HETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPIILPDLSDSLDGHLTDGYSPLTKGG 210 (428)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEEecCcccccCCCCCCCccccCCCC
Confidence 34788777777653 2221 12334666653 235799999999999977665221
Q ss_pred CCHHHH--HhhcCEEEecCCCCcchhHHHHHHH--cCCeEEecCC
Q 016975 205 DHADLI--FHDYKVFLNPSTTDVVCTTTAEALA--MGKIVVCANH 245 (379)
Q Consensus 205 ~~~~~~--~~~~dv~v~ps~~E~~~~~~~EAma--~G~PVI~t~~ 245 (379)
..-+++ +..|.+-|..+ ..++..+.|+|. +|+|-+....
T Consensus 211 ~~~e~i~~~~~A~lniv~~--~~~~~~~a~~L~e~~GiP~~~~~~ 253 (428)
T cd01965 211 TTLEEIRDAGNAKATIALG--EYSGRKAAKALEEKFGVPYILFPT 253 (428)
T ss_pred CcHHHHHHhccCcEEEEEC--hhhhHHHHHHHHHHHCCCeeecCC
Confidence 222233 44444444433 245666777765 8999987763
No 322
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=28.55 E-value=1.7e+02 Score=22.50 Aligned_cols=42 Identities=24% Similarity=0.217 Sum_probs=28.6
Q ss_pred HHHHHhHhhcCCcEEEEEcCCcC----hHHHHHHHHhcCCeeEEec
Q 016975 161 ELLDDHQKELAGLEVDLYGNGED----FNQIQEAAEKLKIVVRVYP 202 (379)
Q Consensus 161 ~a~~~l~~~~~~~~l~i~G~g~~----~~~l~~~~~~~~l~v~~~g 202 (379)
+.+..+....|+..++++|.|.. ..++.+..++.|..+.+..
T Consensus 43 ~~l~~l~~~~~~peiliiGtG~~~~~~~~~~~~~l~~~gi~vevm~ 88 (114)
T cd05125 43 ESLSLFELLEPRPEILVIGTGRKSRPLSPELRKYFKKLGIAVEVVD 88 (114)
T ss_pred HHHHHHHhccCCCCEEEEccCCCCCcCCHHHHHHHHHcCCEEEEEC
Confidence 44544444456788999998886 4556667777777777663
No 323
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=28.19 E-value=3.6e+02 Score=22.63 Aligned_cols=115 Identities=17% Similarity=0.122 Sum_probs=62.2
Q ss_pred ecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCee---EEec------CCCCHHHHHhhc--CEE
Q 016975 149 KMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVV---RVYP------GRDHADLIFHDY--KVF 217 (379)
Q Consensus 149 rl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v---~~~g------~~~~~~~~~~~~--dv~ 217 (379)
.+....|...+++.+.+ . ++++.|+.++.. ..+....+..++.- .+++ ..++++ .|..+ ..-
T Consensus 73 ~~~~~~g~~~~L~~L~~---~--g~~~~i~Sn~~~-~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~-~~~~~~~~~~ 145 (205)
T TIGR01454 73 EVEVFPGVPELLAELRA---D--GVGTAIATGKSG-PRARSLLEALGLLPLFDHVIGSDEVPRPKPAPD-IVREALRLLD 145 (205)
T ss_pred ccccCCCHHHHHHHHHH---C--CCeEEEEeCCch-HHHHHHHHHcCChhheeeEEecCcCCCCCCChH-HHHHHHHHcC
Confidence 34556777766666543 2 577877776554 44555556666521 2222 123344 22221 222
Q ss_pred EecCCC---CcchhHHHHHHHcCCeEEecCCCc--ccccccCCCEEEeCCHHHHHHHH
Q 016975 218 LNPSTT---DVVCTTTAEALAMGKIVVCANHPS--NDFFKQFPNCRTYDDRNGFVEAT 270 (379)
Q Consensus 218 v~ps~~---E~~~~~~~EAma~G~PVI~t~~g~--~e~i~~~~~g~~~~~~~~l~~~i 270 (379)
+.|+.. +.-..=+.-|-++|+++|....|. .+.+......++++++.++.+.+
T Consensus 146 ~~~~~~l~igD~~~Di~aA~~~Gi~~i~~~~g~~~~~~l~~~~~~~~~~~~~~l~~~~ 203 (205)
T TIGR01454 146 VPPEDAVMVGDAVTDLASARAAGTATVAALWGEGDAGELLAARPDFLLRKPQSLLALC 203 (205)
T ss_pred CChhheEEEcCCHHHHHHHHHcCCeEEEEEecCCChhhhhhcCCCeeeCCHHHHHHHh
Confidence 333321 222345778889999998766543 44444444557788888876543
No 324
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=28.17 E-value=3e+02 Score=21.72 Aligned_cols=95 Identities=21% Similarity=0.077 Sum_probs=57.8
Q ss_pred CCcC--hHHHHHHHHhcCCeeEEecCCCCHHHHH-----hhcCEEEecCCCCcch---hHHHHHHHc-C---CeEEecCC
Q 016975 180 NGED--FNQIQEAAEKLKIVVRVYPGRDHADLIF-----HDYKVFLNPSTTDVVC---TTTAEALAM-G---KIVVCANH 245 (379)
Q Consensus 180 ~g~~--~~~l~~~~~~~~l~v~~~g~~~~~~~~~-----~~~dv~v~ps~~E~~~---~~~~EAma~-G---~PVI~t~~ 245 (379)
|+.+ .+-+....+..|..|.-.|....++++. ..+|+++..|..+++. -.+++++.. | .+|++-..
T Consensus 13 D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~ 92 (132)
T TIGR00640 13 DGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGV 92 (132)
T ss_pred CccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCC
Confidence 4444 3445666777888888777765555333 3448999888765432 235555544 3 45666433
Q ss_pred -Cc---ccccccCCCEEEeC--CHHHHHHHHHHHH
Q 016975 246 -PS---NDFFKQFPNCRTYD--DRNGFVEATLKAL 274 (379)
Q Consensus 246 -g~---~e~i~~~~~g~~~~--~~~~l~~~i~~~l 274 (379)
+. .++..-+-.+++.+ ++.+..+.+.+.+
T Consensus 93 ~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~~~ 127 (132)
T TIGR00640 93 IPPQDFDELKEMGVAEIFGPGTPIPESAIFLLKKL 127 (132)
T ss_pred CChHhHHHHHHCCCCEEECCCCCHHHHHHHHHHHH
Confidence 22 22444556677777 8888888887754
No 325
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=27.87 E-value=2e+02 Score=26.97 Aligned_cols=114 Identities=13% Similarity=0.124 Sum_probs=64.9
Q ss_pred cCHHHHHHHHHHhHh--hcCCcEEEEEc----CCcC----hHH---HHH---HHHhcCCeeEEecCCCCHH----HHHhh
Q 016975 154 KGYKELLELLDDHQK--ELAGLEVDLYG----NGED----FNQ---IQE---AAEKLKIVVRVYPGRDHAD----LIFHD 213 (379)
Q Consensus 154 Kg~~~li~a~~~l~~--~~~~~~l~i~G----~g~~----~~~---l~~---~~~~~~l~v~~~g~~~~~~----~~~~~ 213 (379)
+++...++.+.+..+ ..++-++.|+| .|+. .++ +.- .+++.| +.+.|.++.+. .....
T Consensus 182 e~i~~~i~~~~~~l~~~gi~~PrIaV~gLNPHAGE~G~~G~EE~~iI~PAI~~~~~~G--~~v~GP~paDt~F~~~~~~~ 259 (332)
T PRK00232 182 ERLEEVIRILHADLRRKGIAEPRIAVCGLNPHAGEGGHFGREEIDIIIPALEELRAEG--INLVGPLPADTLFQPAYLGD 259 (332)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEEeeCCCCCCCCCCCHHHHHHHHHHHHHHHhCC--CCcCCCCCchhhccccccCC
Confidence 444444444444333 22445788888 2221 222 222 233334 34578887777 44556
Q ss_pred cCEEEecCCCCc-chhHHHHH-----HHcCCeEEecCC--Cc-ccccccCCCEEEeCCHHHHHHHHHHHH
Q 016975 214 YKVFLNPSTTDV-VCTTTAEA-----LAMGKIVVCANH--PS-NDFFKQFPNCRTYDDRNGFVEATLKAL 274 (379)
Q Consensus 214 ~dv~v~ps~~E~-~~~~~~EA-----ma~G~PVI~t~~--g~-~e~i~~~~~g~~~~~~~~l~~~i~~~l 274 (379)
+|++|-..+.-| .|++++.. +..|+|+|-|.. |. .++...+ ..|+.++.++|..+.
T Consensus 260 ~D~vvaMYHDQGliP~K~l~F~~gVNvTlGLPiiRTS~DHGTAfDIAGkg-----~A~~~S~~~Ai~lA~ 324 (332)
T PRK00232 260 ADAVLAMYHDQGLPVLKYLGFGRGVNITLGLPFIRTSVDHGTALDLAGKG-----IADVGSFITALNLAI 324 (332)
T ss_pred CCEEEECcccccchhheecccCcceEEecCCCeeEeCCCCcchhhhhcCC-----CCCHHHHHHHHHHHH
Confidence 799987755433 23443332 357999998876 65 5555443 248999999988764
No 326
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=27.61 E-value=1.1e+02 Score=22.47 Aligned_cols=48 Identities=10% Similarity=0.169 Sum_probs=32.7
Q ss_pred EEEEcCCcC-----hHHHHHHHHhcCCeeEEec-CCCCHHHHHhhcCEEEecCC
Q 016975 175 VDLYGNGED-----FNQIQEAAEKLKIVVRVYP-GRDHADLIFHDYKVFLNPST 222 (379)
Q Consensus 175 l~i~G~g~~-----~~~l~~~~~~~~l~v~~~g-~~~~~~~~~~~~dv~v~ps~ 222 (379)
++++|.|-. ...+++..++.|.++.+.. .+...+.....+|+++.++.
T Consensus 6 LvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~~~~e~~~~~~~~D~iv~t~~ 59 (94)
T PRK10310 6 IVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIETYMDGVHLICTTAR 59 (94)
T ss_pred EEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecHHHHhhhcCCCCEEEECCc
Confidence 788998875 3456677788888777764 33333345577898887764
No 327
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=27.38 E-value=1.1e+02 Score=23.28 Aligned_cols=43 Identities=26% Similarity=0.345 Sum_probs=31.7
Q ss_pred CCHHHHHh--hcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc
Q 016975 205 DHADLIFH--DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS 247 (379)
Q Consensus 205 ~~~~~~~~--~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~ 247 (379)
.+.++++. ..|++|=.+-.+...--+.+++..|+.||+.+.++
T Consensus 49 ~~~~~~~~~~~~dvvVE~t~~~~~~~~~~~~L~~G~~VVt~nk~a 93 (117)
T PF03447_consen 49 TDLEELIDDPDIDVVVECTSSEAVAEYYEKALERGKHVVTANKGA 93 (117)
T ss_dssp SSHHHHHTHTT-SEEEE-SSCHHHHHHHHHHHHTTCEEEES-HHH
T ss_pred CCHHHHhcCcCCCEEEECCCchHHHHHHHHHHHCCCeEEEECHHH
Confidence 34446666 78999977667777777889999999999999854
No 328
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=27.30 E-value=3e+02 Score=26.94 Aligned_cols=64 Identities=20% Similarity=0.251 Sum_probs=42.7
Q ss_pred HHHhhcCEE--------EecCCCC--c---chhHHHHHHHcCCeEEecCC-Cc------ccccccCCCEEEeCCHHHHHH
Q 016975 209 LIFHDYKVF--------LNPSTTD--V---VCTTTAEALAMGKIVVCANH-PS------NDFFKQFPNCRTYDDRNGFVE 268 (379)
Q Consensus 209 ~~~~~~dv~--------v~ps~~E--~---~~~~~~EAma~G~PVI~t~~-g~------~e~i~~~~~g~~~~~~~~l~~ 268 (379)
+-+.+.|+. |||.-.| + +||+++|+--+..-+|.-+. +. ++.+-...+-.++-|.++-.+
T Consensus 377 ~~F~~tDvalVIGANDvVNPaA~~dp~SpIyGMPvL~v~kAk~Viv~KRs~~~GyAGv~NpLF~~~nt~MlfGDAK~~~~ 456 (462)
T PRK09444 377 DDFADTDTVLVIGANDTVNPAAQEDPNSPIAGMPVLEVWKAQNVIVFKRSMNTGYAGVQNPLFFKENTQMLFGDAKASVD 456 (462)
T ss_pred cccccCCEEEEecCccCCCcccccCCCCCcCCCceeehhhCCEEEEEeCCCCCCcCCCCCcceecCCceEEeccHHHHHH
Confidence 345566775 4787543 2 89999999999998888776 32 445555445566667777666
Q ss_pred HHHH
Q 016975 269 ATLK 272 (379)
Q Consensus 269 ~i~~ 272 (379)
.+.+
T Consensus 457 ~l~~ 460 (462)
T PRK09444 457 AILK 460 (462)
T ss_pred HHHH
Confidence 6543
No 329
>COG1432 Uncharacterized conserved protein [Function unknown]
Probab=27.24 E-value=2.8e+02 Score=23.30 Aligned_cols=69 Identities=13% Similarity=0.029 Sum_probs=46.7
Q ss_pred cccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHH-HHHhhcCEEEecC
Q 016975 152 WSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD-LIFHDYKVFLNPS 221 (379)
Q Consensus 152 ~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~-~~~~~~dv~v~ps 221 (379)
....+...++++.......-+.-+++-||++-..- -+.+++.|..+.+.+..+... ++-+.||-|+.-+
T Consensus 92 ~~vDv~la~D~~~l~~~~~~D~ivl~SgD~DF~p~-v~~~~~~G~rv~v~~~~~~~s~~L~~~aD~~i~L~ 161 (181)
T COG1432 92 GDVDVELAVDAMELADKKNVDTIVLFSGDGDFIPL-VEAARDKGKRVEVAGIEPMTSSDLRNAADYYIDLK 161 (181)
T ss_pred cCcchhhHHHHHHhhcccCCCEEEEEcCCccHHHH-HHHHHHcCCEEEEEecCCcCHHHHHHhhcceEEch
Confidence 34455566777776654444665666687776444 455677788888887666555 8999999887654
No 330
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=27.06 E-value=3e+02 Score=25.16 Aligned_cols=73 Identities=10% Similarity=0.048 Sum_probs=44.1
Q ss_pred cEEEEEcCCcChHHHHHHHHhcCCeeEEecCCC------------CHHHHHhhcCEEEecCCC-------------Ccc-
Q 016975 173 LEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRD------------HADLIFHDYKVFLNPSTT-------------DVV- 226 (379)
Q Consensus 173 ~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~------------~~~~~~~~~dv~v~ps~~-------------E~~- 226 (379)
.++.++|...-.-++-+...+.|..|.+.|.-+ ..++.+..+|+.+.|... +..
T Consensus 3 ~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~ 82 (296)
T PRK08306 3 KHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNEKLV 82 (296)
T ss_pred cEEEEEcCcHHHHHHHHHHHHCCCEEEEEeccccccccCCceeeccHHHHhccCCEEEECCccccCCceeeccccccCCc
Confidence 456666643333344444555677777655421 223778999999988221 122
Q ss_pred -hhHHHHHHHcCCeEEecCC
Q 016975 227 -CTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 227 -~~~~~EAma~G~PVI~t~~ 245 (379)
.-..++.|.-|..+++...
T Consensus 83 ~~~~~l~~l~~~~~v~~G~~ 102 (296)
T PRK08306 83 LTEELLELTPEHCTIFSGIA 102 (296)
T ss_pred chHHHHHhcCCCCEEEEecC
Confidence 2357899999987776444
No 331
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=26.74 E-value=3e+02 Score=22.78 Aligned_cols=67 Identities=6% Similarity=-0.058 Sum_probs=41.8
Q ss_pred HHHhhcCEEEecCCC-CcchhHHHHHHH---cCCeEEecCCCcccccccCCCE-EEeC-CHHHHHHHHHHHHh
Q 016975 209 LIFHDYKVFLNPSTT-DVVCTTTAEALA---MGKIVVCANHPSNDFFKQFPNC-RTYD-DRNGFVEATLKALA 275 (379)
Q Consensus 209 ~~~~~~dv~v~ps~~-E~~~~~~~EAma---~G~PVI~t~~g~~e~i~~~~~g-~~~~-~~~~l~~~i~~~l~ 275 (379)
+-+..+|+++..-.+ |..-..+.+++. -.+|++..-....|++.-..-| |... ........+.++..
T Consensus 53 ~aia~ADii~~smlF~ed~v~~l~~~L~~~r~~~~a~i~~~sapelm~lTrlG~f~m~~~~~g~~~~lKkl~~ 125 (164)
T PF11965_consen 53 AAIARADIIFGSMLFIEDHVRPLLPALEARRDHCPAMIIFESAPELMRLTRLGKFSMGGEKSGPPALLKKLRG 125 (164)
T ss_pred HHHHhCCEEEeehhhhHHHHHHHHHHHHHHHccCCEEEEEcCHHHHHHHhcccceecCCCCcchHHHHHHHHh
Confidence 678888999887665 666556666655 3466655545556777655445 4444 55666666666554
No 332
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=26.61 E-value=3.5e+02 Score=22.01 Aligned_cols=74 Identities=19% Similarity=0.188 Sum_probs=44.0
Q ss_pred cceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcC---h-----HHHHHHHHhcCCeeEEecCCCCHHHHHh
Q 016975 141 AKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED---F-----NQIQEAAEKLKIVVRVYPGRDHADLIFH 212 (379)
Q Consensus 141 ~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~---~-----~~l~~~~~~~~l~v~~~g~~~~~~~~~~ 212 (379)
...|.|+|. ....=..-++.++..+ +..+.+++.... . +..++.+++.+..+.+. ++.++.+.
T Consensus 2 gl~i~~vGD-~~~rv~~Sl~~~~~~~-----g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~---~~~~e~l~ 72 (158)
T PF00185_consen 2 GLKIAYVGD-GHNRVAHSLIELLAKF-----GMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITIT---DDIEEALK 72 (158)
T ss_dssp TEEEEEESS-TTSHHHHHHHHHHHHT-----TSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEE---SSHHHHHT
T ss_pred CCEEEEECC-CCChHHHHHHHHHHHc-----CCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEE---eCHHHhcC
Confidence 346889995 2232233444444443 466899885441 1 12234455556666666 66668999
Q ss_pred hcCEEEecCCC
Q 016975 213 DYKVFLNPSTT 223 (379)
Q Consensus 213 ~~dv~v~ps~~ 223 (379)
.+|++...++.
T Consensus 73 ~aDvvy~~~~~ 83 (158)
T PF00185_consen 73 GADVVYTDRWQ 83 (158)
T ss_dssp T-SEEEEESSS
T ss_pred CCCEEEEcCcc
Confidence 99999887765
No 333
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=26.57 E-value=2.1e+02 Score=26.85 Aligned_cols=73 Identities=8% Similarity=0.002 Sum_probs=47.6
Q ss_pred eEEecCCCCHH----HHHhhcCEEEecCCCCc-chhHHHHH-----HHcCCeEEecCC--Cc-ccccccCCCEEEeCCHH
Q 016975 198 VRVYPGRDHAD----LIFHDYKVFLNPSTTDV-VCTTTAEA-----LAMGKIVVCANH--PS-NDFFKQFPNCRTYDDRN 264 (379)
Q Consensus 198 v~~~g~~~~~~----~~~~~~dv~v~ps~~E~-~~~~~~EA-----ma~G~PVI~t~~--g~-~e~i~~~~~g~~~~~~~ 264 (379)
+.+.|.++.+. ..+..+|++|-..+.-| -+++++.. +..|+|+|-|.. |. .++...+ ..|+.
T Consensus 245 i~v~GP~paDt~F~~~~~~~~D~vvaMYHDQGliP~K~l~F~~gVNvTlGLP~iRTSvDHGTAfDIAGkg-----~A~~~ 319 (336)
T PRK05312 245 IDARGPLPADTMFHAAARATYDAAICMYHDQALIPIKTLDFDGGVNVTLGLPFIRTSPDHGTAFDIAGKG-----IARPD 319 (336)
T ss_pred CCccCCCCchhhcccccccCCCEEEEcccccCChhheecccCcceEEecCCCeeEeCCCCcchhhhhcCC-----CCCHH
Confidence 44668887777 55567899987655433 23343332 357999998877 65 5555443 23899
Q ss_pred HHHHHHHHHHh
Q 016975 265 GFVEATLKALA 275 (379)
Q Consensus 265 ~l~~~i~~~l~ 275 (379)
++.+||..+..
T Consensus 320 S~~~Ai~lA~~ 330 (336)
T PRK05312 320 SLIAALRLAAQ 330 (336)
T ss_pred HHHHHHHHHHH
Confidence 99999887643
No 334
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=26.48 E-value=4.4e+02 Score=23.07 Aligned_cols=39 Identities=10% Similarity=0.060 Sum_probs=23.8
Q ss_pred HHHHHHHHHhcCCcccceeecccCCCCCchHHHHHHhCCC
Q 016975 333 EASAYVHFLASGFETSRRAFGAIPGSLHPDEELCKELGLV 372 (379)
Q Consensus 333 ~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 372 (379)
.+...+..++...+....+++. ..........+++.|+|
T Consensus 170 ~~~~~~~~~l~~~~~~~~i~~~-d~~a~~~~~~l~~~g~p 208 (268)
T cd06306 170 VQRKLVEEALEAHPDIDYIVGS-AVAAEAAVGILRQRGLT 208 (268)
T ss_pred HHHHHHHHHHHhCCCcCEEeec-chhhhHHHHHHHhcCCC
Confidence 3444555556555445666764 33555677788889974
No 335
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=26.06 E-value=4.9e+02 Score=23.48 Aligned_cols=99 Identities=16% Similarity=0.137 Sum_probs=47.7
Q ss_pred ccCHHHHHHHHHHhHhhcCCc-EE-EEEcCCcC-----hHHHHHHHHhcCCeeEEe--cCCCCHH----HHHhhcCEEEe
Q 016975 153 SKGYKELLELLDDHQKELAGL-EV-DLYGNGED-----FNQIQEAAEKLKIVVRVY--PGRDHAD----LIFHDYKVFLN 219 (379)
Q Consensus 153 ~Kg~~~li~a~~~l~~~~~~~-~l-~i~G~g~~-----~~~l~~~~~~~~l~v~~~--g~~~~~~----~~~~~~dv~v~ 219 (379)
..-+..-++.+.++ .|+. ++ +++.+... .+.+++.+++.|+++... ....+.+ .+-...|+++.
T Consensus 114 ~~~~~~~l~l~~~l---~P~~k~igvl~~~~~~~~~~~~~~~~~~a~~~g~~l~~~~v~~~~~~~~~~~~l~~~~da~~~ 190 (294)
T PF04392_consen 114 RPPIEKQLELIKKL---FPDAKRIGVLYDPSEPNSVAQIEQLRKAAKKLGIELVEIPVPSSEDLEQALEALAEKVDALYL 190 (294)
T ss_dssp ---HHHHHHHHHHH---STT--EEEEEEETT-HHHHHHHHHHHHHHHHTT-EEEEEEESSGGGHHHHHHHHCTT-SEEEE
T ss_pred CcCHHHHHHHHHHh---CCCCCEEEEEecCCCccHHHHHHHHHHHHHHcCCEEEEEecCcHhHHHHHHHHhhccCCEEEE
Confidence 33444555555554 4443 23 34443332 445777778888876544 2222222 34445688777
Q ss_pred cCCC---CcchhHHHHHHHcCCeEEecCCCcccccccCCCE
Q 016975 220 PSTT---DVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNC 257 (379)
Q Consensus 220 ps~~---E~~~~~~~EAma~G~PVI~t~~g~~e~i~~~~~g 257 (379)
+... ..+...+..+..+++||+++.. ..+..+.-|
T Consensus 191 ~~~~~~~~~~~~i~~~~~~~~iPv~~~~~---~~v~~Gal~ 228 (294)
T PF04392_consen 191 LPDNLVDSNFEAILQLANEAKIPVFGSSD---FYVKAGALG 228 (294)
T ss_dssp -S-HHHHHTHHHHHHHCCCTT--EEESSH---HHHCTT-SE
T ss_pred ECCcchHhHHHHHHHHHHhcCCCEEECCH---HHhcCCcEE
Confidence 6532 3344445577789999999763 445555333
No 336
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=26.05 E-value=5.7e+02 Score=24.19 Aligned_cols=98 Identities=15% Similarity=0.036 Sum_probs=59.1
Q ss_pred eEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcC-----------CcC---hHHHHHHHHhcCCeeEEecCCCCHH
Q 016975 143 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGN-----------GED---FNQIQEAAEKLKIVVRVYPGRDHAD 208 (379)
Q Consensus 143 ~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~-----------g~~---~~~l~~~~~~~~l~v~~~g~~~~~~ 208 (379)
.++..| ...-.+-+.+++.+..++.. ..+++..|. |.. .+.+.+..++.|+.+. ..-.+...
T Consensus 102 l~vIAG-PCsIEs~eq~l~~A~~lk~~--g~~~~r~g~~kpRtsp~sf~G~g~~gl~~L~~~~~e~Gl~~~-tev~d~~~ 177 (352)
T PRK13396 102 VVVVAG-PCSVENEEMIVETAKRVKAA--GAKFLRGGAYKPRTSPYAFQGHGESALELLAAAREATGLGII-TEVMDAAD 177 (352)
T ss_pred EEEEEe-CCcccCHHHHHHHHHHHHHc--CCCEEEeeeecCCCCCcccCCchHHHHHHHHHHHHHcCCcEE-EeeCCHHH
Confidence 344444 55567778888888888765 455666551 111 3445666667776532 22222222
Q ss_pred --HHHhhcCEEEecCCC-CcchhHHHHHHHcCCeEEecCC
Q 016975 209 --LIFHDYKVFLNPSTT-DVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 209 --~~~~~~dv~v~ps~~-E~~~~~~~EAma~G~PVI~t~~ 245 (379)
.+...+|++-.+|.. ..|.+ +-++...|+||+.++-
T Consensus 178 v~~~~~~~d~lqIga~~~~n~~L-L~~va~t~kPVllk~G 216 (352)
T PRK13396 178 LEKIAEVADVIQVGARNMQNFSL-LKKVGAQDKPVLLKRG 216 (352)
T ss_pred HHHHHhhCCeEEECcccccCHHH-HHHHHccCCeEEEeCC
Confidence 444557999999864 44543 4444578999999876
No 337
>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=25.83 E-value=2.7e+02 Score=26.56 Aligned_cols=88 Identities=14% Similarity=0.052 Sum_probs=53.6
Q ss_pred ccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhh--cCEEEecCCCCcchh
Q 016975 151 VWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPSTTDVVCT 228 (379)
Q Consensus 151 ~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~--~dv~v~ps~~E~~~~ 228 (379)
...+|++.|.+...++ .| +.+.+++......++.... +...+++.+.+...++... +|++|+....-.-=.
T Consensus 29 aa~~n~~~L~~q~~~f---~p--~~v~i~~~~~~~~l~~~l~--~~~~~v~~G~~~l~~l~~~~~~D~vv~AivG~aGL~ 101 (383)
T PRK12464 29 TANYNIELLEQQIKRF---QP--RIVSVADKELADTLRTRLS--ANTSKITYGTDGLIAVATHPGSDLVLSSVVGAAGLL 101 (383)
T ss_pred ECCCCHHHHHHHHHHh---CC--CEEEEcCHHHHHHHHHhcc--CCCcEEEECHHHHHHHHcCCCCCEEEEhhhcHhhHH
Confidence 4578999888888776 23 4556666554555554332 2234555443333355553 488888654322223
Q ss_pred HHHHHHHcCCeEEecCC
Q 016975 229 TTAEALAMGKIVVCANH 245 (379)
Q Consensus 229 ~~~EAma~G~PVI~t~~ 245 (379)
++++|+..|+.+--.+-
T Consensus 102 pt~~Ai~~gk~iaLANK 118 (383)
T PRK12464 102 PTIEALKAKKDIALANK 118 (383)
T ss_pred HHHHHHHCCCcEEEech
Confidence 58999999999877774
No 338
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=25.56 E-value=4.1e+02 Score=22.41 Aligned_cols=63 Identities=22% Similarity=0.232 Sum_probs=35.8
Q ss_pred hcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCcccccccCCCEEEeC-CHHHHHHHHHHHHhC
Q 016975 213 DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYD-DRNGFVEATLKALAE 276 (379)
Q Consensus 213 ~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~~e~i~~~~~g~~~~-~~~~l~~~i~~~l~~ 276 (379)
.+|.++.+..........-.+-..|+|+|+......+.. ...+...+. |.......+.+++..
T Consensus 58 ~~d~ii~~~~~~~~~~~~~~~~~~~ip~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~ 121 (269)
T cd01391 58 GVDGIIGPPSSSSALAVVELAAAAGIPVVSLDATAPDLT-GYPYVFRVGPDNEQAGEAAAEYLAE 121 (269)
T ss_pred CCCEEEecCCCHHHHHHHHHHHHcCCcEEEecCCCCccC-CCceEEEEcCCcHHHHHHHHHHHHH
Confidence 568888776553322245566678999999877443322 222333333 655556655555543
No 339
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=25.44 E-value=4.1e+02 Score=24.97 Aligned_cols=91 Identities=13% Similarity=0.067 Sum_probs=54.0
Q ss_pred cceEEEEEecccccCHHHHHHHHHHhHhhcC-CcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEE--
Q 016975 141 AKGAYYIGKMVWSKGYKELLELLDDHQKELA-GLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVF-- 217 (379)
Q Consensus 141 ~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~-~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~-- 217 (379)
+..++.+|. .. |- ..++++..+ + +++++-+-+ .+.+..++.+++.+.. ...+.++++...|+.
T Consensus 3 ~~rVgViG~-~~--G~-~h~~al~~~----~~~~eLvaV~d-~~~erA~~~A~~~gi~-----~y~~~eell~d~Di~~V 68 (343)
T TIGR01761 3 VQSVVVCGT-RF--GQ-FYLAAFAAA----PERFELAGILA-QGSERSRALAHRLGVP-----LYCEVEELPDDIDIACV 68 (343)
T ss_pred CcEEEEEeH-HH--HH-HHHHHHHhC----CCCcEEEEEEc-CCHHHHHHHHHHhCCC-----ccCCHHHHhcCCCEEEE
Confidence 457888886 33 32 345666543 3 566654444 3456667777777643 345556777665554
Q ss_pred EecCCC--CcchhHHHHHHHcCCeEEecCC
Q 016975 218 LNPSTT--DVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 218 v~ps~~--E~~~~~~~EAma~G~PVI~t~~ 245 (379)
..|+.. ..-.-...+|+..|+.|+|=.-
T Consensus 69 ~ipt~~P~~~H~e~a~~aL~aGkHVL~EKP 98 (343)
T TIGR01761 69 VVRSAIVGGQGSALARALLARGIHVLQEHP 98 (343)
T ss_pred EeCCCCCCccHHHHHHHHHhCCCeEEEcCC
Confidence 444321 1223346789999999999776
No 340
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=25.37 E-value=4.5e+02 Score=22.78 Aligned_cols=43 Identities=14% Similarity=-0.009 Sum_probs=26.1
Q ss_pred HHHHHHHHHhcCCcccceeecccCCCCCchHHHHHHhCCCCCC
Q 016975 333 EASAYVHFLASGFETSRRAFGAIPGSLHPDEELCKELGLVTPM 375 (379)
Q Consensus 333 ~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 375 (379)
.+...+..++...+....+|+..........+.+++.|+..|+
T Consensus 169 ~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~iP~ 211 (270)
T cd06294 169 GGYKALKKLLEQHPRPTAIVATDDLLALGVLKVLNELGLKVPE 211 (270)
T ss_pred HHHHHHHHHHhCCCCCCEEEECChHHHHHHHHHHHHcCCCCCc
Confidence 3444555556555445667775444455566778888986663
No 341
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=25.32 E-value=6.3e+02 Score=24.94 Aligned_cols=107 Identities=10% Similarity=-0.020 Sum_probs=69.1
Q ss_pred cEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHhhc--CEEEecCCC-CcchhHHHHHHHc---CCeEEecCC
Q 016975 173 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHDY--KVFLNPSTT-DVVCTTTAEALAM---GKIVVCANH 245 (379)
Q Consensus 173 ~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~--dv~v~ps~~-E~~~~~~~EAma~---G~PVI~t~~ 245 (379)
.+++++-|.++ +..+.......|.++.......+.-+.+... |+++.=... +.-|+.+++.+.. +.|||.-.-
T Consensus 5 ~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~~~~lvl~Di~mp~~~Gl~ll~~i~~~~~~~pVI~~Tg 84 (464)
T COG2204 5 ARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSESPFDLVLLDIRMPGMDGLELLKEIKSRDPDLPVIVMTG 84 (464)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHhhCCCCCEEEEeC
Confidence 34677777666 4446667777777777766554444455544 666543332 6778888887655 688876544
Q ss_pred -Cccc----ccccCCCEEEeC--CHHHHHHHHHHHHhCCCC
Q 016975 246 -PSND----FFKQFPNCRTYD--DRNGFVEATLKALAEEPA 279 (379)
Q Consensus 246 -g~~e----~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~~ 279 (379)
|..+ -+..+-.-|+.. +++.+...+.+++.....
T Consensus 85 ~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~~ 125 (464)
T COG2204 85 HGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELREL 125 (464)
T ss_pred CCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHhhh
Confidence 6633 334443335655 999999999999986443
No 342
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=25.29 E-value=5.1e+02 Score=23.36 Aligned_cols=41 Identities=10% Similarity=-0.003 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhcCC-cccceeecccCCCCCchHHHHHHhCCC
Q 016975 332 EEASAYVHFLASGF-ETSRRAFGAIPGSLHPDEELCKELGLV 372 (379)
Q Consensus 332 ~~~l~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~ 372 (379)
+++...+..++... +....+++.......-..+.+++.|+|
T Consensus 168 ~~~~~~~~~ll~~~~~~~~aI~~~~D~~A~g~~~al~~~g~~ 209 (302)
T TIGR02634 168 ENALRIMENALTANDNKVDAVVASNDATAGGAIQALTAQGLA 209 (302)
T ss_pred HHHHHHHHHHHHhCCCCccEEEECCCchHHHHHHHHHHCCCC
Confidence 34556666666533 345667766555444567777788874
No 343
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.09 E-value=5.4e+02 Score=23.59 Aligned_cols=35 Identities=11% Similarity=-0.093 Sum_probs=27.9
Q ss_pred HcCCeEEecCCCcccccccCCCEEEeC-CHHHHHHHHHHHHhCC
Q 016975 235 AMGKIVVCANHPSNDFFKQFPNCRTYD-DRNGFVEATLKALAEE 277 (379)
Q Consensus 235 a~G~PVI~t~~g~~e~i~~~~~g~~~~-~~~~l~~~i~~~l~~~ 277 (379)
..++||+.-+.| .-||+.+ +++++.+++.++++..
T Consensus 84 ~~~~Pvlgin~G--------~lGFl~~~~~~~~~~~l~~~~~g~ 119 (295)
T PRK01231 84 RHNVPVLGINRG--------RLGFLTDIRPDELEFKLAEVLDGH 119 (295)
T ss_pred CCCCCEEEEeCC--------cccccccCCHHHHHHHHHHHHcCC
Confidence 457899887764 4678877 8999999999998764
No 344
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=24.90 E-value=4.5e+02 Score=22.66 Aligned_cols=59 Identities=15% Similarity=0.091 Sum_probs=32.8
Q ss_pred hcCEEEe-cCCCCcchhHHHHHHHcCCeEEecCCCcccccccCCCEEEeCCHHHHHHHHHHHHhC
Q 016975 213 DYKVFLN-PSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAE 276 (379)
Q Consensus 213 ~~dv~v~-ps~~E~~~~~~~EAma~G~PVI~t~~g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~~ 276 (379)
..|.++. +...+ ...+-++...|+|||+.+..... .....+..++.+....+...+++.
T Consensus 55 ~~dgiii~~~~~~--~~~l~~~~~~~ipvV~~~~~~~~---~~~~~v~~d~~~~g~~~~~~l~~~ 114 (267)
T cd06283 55 QVDGLIVNPTGNN--KELYQRLAKNGKPVVLVDRKIPE---LGVDTVTLDNYEAAKEAVDHLIEK 114 (267)
T ss_pred CcCEEEEeCCCCC--hHHHHHHhcCCCCEEEEcCCCCC---CCCCEEEeccHHHHHHHHHHHHHc
Confidence 3465554 43222 22356667789999998764322 122345555666655666666554
No 345
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=24.81 E-value=3.2e+02 Score=25.49 Aligned_cols=67 Identities=15% Similarity=0.178 Sum_probs=45.8
Q ss_pred CcEEEEEcCCcChHHHHHHHHhcCCeeEEecC-CCC-------------HHHHHhhcCEEEe--cCCCCcchhH---HHH
Q 016975 172 GLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPG-RDH-------------ADLIFHDYKVFLN--PSTTDVVCTT---TAE 232 (379)
Q Consensus 172 ~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~-~~~-------------~~~~~~~~dv~v~--ps~~E~~~~~---~~E 232 (379)
+-++-|+|-|.--..+-+.++.+|.++..+.. .+. -+++++.||++++ |..-|+.|+- .+.
T Consensus 142 gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a 221 (324)
T COG0111 142 GKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELA 221 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHh
Confidence 45788888888777888888888888776644 222 2289999999874 5666777765 444
Q ss_pred HHHcCC
Q 016975 233 ALAMGK 238 (379)
Q Consensus 233 Ama~G~ 238 (379)
.|--|.
T Consensus 222 ~MK~ga 227 (324)
T COG0111 222 KMKPGA 227 (324)
T ss_pred hCCCCe
Confidence 444343
No 346
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=24.68 E-value=4.7e+02 Score=22.77 Aligned_cols=60 Identities=13% Similarity=0.068 Sum_probs=32.8
Q ss_pred hcCEEEe-cCCCCcchhHHHHHHHcCCeEEecCCCcccccccCCCEEEeCCHHHHHHHHHHHHhC
Q 016975 213 DYKVFLN-PSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAE 276 (379)
Q Consensus 213 ~~dv~v~-ps~~E~~~~~~~EAma~G~PVI~t~~g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~~ 276 (379)
.+|.+|+ |...+...-.+-++...|+|||.-+....+ ....+..++......+...++..
T Consensus 57 ~~dgiIi~~~~~~~~~~~i~~~~~~~ipvv~~~~~~~~----~~~~V~~d~~~~g~~~~~~l~~~ 117 (271)
T cd06321 57 KVDLILLNAVDSKGIAPAVKRAQAAGIVVVAVDVAAEG----ADATVTTDNVQAGEISCQYLADR 117 (271)
T ss_pred CCCEEEEeCCChhHhHHHHHHHHHCCCeEEEecCCCCC----ccceeeechHHHHHHHHHHHHHH
Confidence 4465544 433233333456667889999999774321 12234444555555555555553
No 347
>PRK08374 homoserine dehydrogenase; Provisional
Probab=24.49 E-value=5.2e+02 Score=24.14 Aligned_cols=40 Identities=28% Similarity=0.331 Sum_probs=31.9
Q ss_pred HHHHH--hhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCC
Q 016975 207 ADLIF--HDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHP 246 (379)
Q Consensus 207 ~~~~~--~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g 246 (379)
.++++ ..+|++|-.+..+...-....++..|++||+++.+
T Consensus 83 ~~ell~~~~~DVvVd~t~~~~a~~~~~~al~~G~~VVtanK~ 124 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTNDKNAHEWHLEALKEGKSVVTSNKP 124 (336)
T ss_pred HHHHHhcCCCCEEEECCCcHHHHHHHHHHHhhCCcEEECCHH
Confidence 33666 46799998887677777788999999999988875
No 348
>PF01973 MAF_flag10: Protein of unknown function DUF115; InterPro: IPR002826 The prokaryotic proteins in this family have no known function.
Probab=24.48 E-value=3.9e+02 Score=21.81 Aligned_cols=79 Identities=9% Similarity=0.064 Sum_probs=39.0
Q ss_pred CcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHH-HHHhhc---CEEEecCCCCcchhH-HHHHHHc-CCeEEecCC
Q 016975 172 GLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD-LIFHDY---KVFLNPSTTDVVCTT-TAEALAM-GKIVVCANH 245 (379)
Q Consensus 172 ~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~-~~~~~~---dv~v~ps~~E~~~~~-~~EAma~-G~PVI~t~~ 245 (379)
+..++|+|.||..++-....++...+..++. ++..- .++..- |+++..-. ..+... ..|.... ..|.+++..
T Consensus 24 ~~~~~IvgaGPSL~~~i~~lk~~~~~~~iia-~~sa~~~L~~~gI~Pd~~v~~D~-~~~~~~~~~~~~~~~~i~l~~~~~ 101 (170)
T PF01973_consen 24 GKPAIIVGAGPSLDKNIELLKENRNKAIIIA-VNSALKALLKNGIKPDFVVSIDP-QFWNYEHFKEINKEFDIPLFFASS 101 (170)
T ss_pred CCeEEEEecCCCHHHHHHHHHhcccCcEEEE-ecHHHHHHHHcCceEEEEEEcCC-CcchHHHHhhcccccceEEEEecc
Confidence 4889999999997665555554433333321 12222 222222 55554221 122222 3333333 577777666
Q ss_pred Ccccccc
Q 016975 246 PSNDFFK 252 (379)
Q Consensus 246 g~~e~i~ 252 (379)
-....+.
T Consensus 102 ~~~~~~~ 108 (170)
T PF01973_consen 102 ANPNILR 108 (170)
T ss_pred cCHHHHH
Confidence 4444444
No 349
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=24.34 E-value=6e+02 Score=23.85 Aligned_cols=122 Identities=11% Similarity=0.090 Sum_probs=68.4
Q ss_pred cceEEEcChh---hhhhhh-ccceeecccCCCCccCccccHHH---hhc----CCCCCcceEEEEEecccccCHHHHHHH
Q 016975 94 CHKVIRLSAA---TQEYAN-SIICNVHGVNPKFLEIGKKKKEQ---QQN----GTHAFAKGAYYIGKMVWSKGYKELLEL 162 (379)
Q Consensus 94 ~d~vi~~S~~---~~~~~~-~~i~~i~gvd~~~~~~~~~~~~~---~~~----~~~~~~~~il~vgrl~~~Kg~~~li~a 162 (379)
+|.++.=... ..++.. ..+.+||+-+-+...|....... .+. +..-....|.|+|-+...+=...++.+
T Consensus 101 ~D~IviR~~~~~~~~~~a~~~~vPVINa~~g~~~HPtQaLaDl~Ti~e~~~~~g~~l~g~kia~vGD~~~~rv~~Sl~~~ 180 (338)
T PRK08192 101 SDVIAMRHPDAGSVKEFAEGSRVPVINGGDGSNEHPTQALLDLFTIQKELAHAGRGIDGMHIAMVGDLKFGRTVHSLSRL 180 (338)
T ss_pred CCEEEEeCCchhHHHHHHHhCCCCEEECCCCCCCCcHHHHHHHHHHHHHhhccCCCcCCCEEEEECcCCCCchHHHHHHH
Confidence 5877765522 233322 46788898874445554322221 111 111235689999976434445555555
Q ss_pred HHHhHhhcCCcEEEEEcCCcC--hHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCC
Q 016975 163 LDDHQKELAGLEVDLYGNGED--FNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPST 222 (379)
Q Consensus 163 ~~~l~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~ 222 (379)
+.. ..++.+.+++.... ...+.+.+++.+..+.+ .++.++.+..+|++...+.
T Consensus 181 l~~----~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~---~~d~~ea~~~aDvvyt~~~ 235 (338)
T PRK08192 181 LCM----YKNVSFTLVSPKELAMPDYVISDIENAGHKITI---TDQLEGNLDKADILYLTRI 235 (338)
T ss_pred HHH----hcCCEEEEECCccccCCHHHHHHHHHcCCeEEE---EcCHHHHHccCCEEEEcCc
Confidence 442 34688999985332 33444445554544443 3455688999999988654
No 350
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=24.13 E-value=3.4e+02 Score=25.47 Aligned_cols=131 Identities=15% Similarity=0.016 Sum_probs=68.0
Q ss_pred cCCcEEEEEcCCcChHHHHHHHHhcCC-eeEEecCC----CCHH------HHHhhcCEEEecC--CCCcchhHHHHHHHc
Q 016975 170 LAGLEVDLYGNGEDFNQIQEAAEKLKI-VVRVYPGR----DHAD------LIFHDYKVFLNPS--TTDVVCTTTAEALAM 236 (379)
Q Consensus 170 ~~~~~l~i~G~g~~~~~l~~~~~~~~l-~v~~~g~~----~~~~------~~~~~~dv~v~ps--~~E~~~~~~~EAma~ 236 (379)
..+-+++++|.|+.-...-+...+.|. ++.+.... +..+ .+...+|+.+..| ..-+.+....|.+.-
T Consensus 172 l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~~~~~ 251 (338)
T PRK00676 172 SKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLPYRTVVREELSFQDPYDVIFFGSSESAYAFPHLSWESLAD 251 (338)
T ss_pred ccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccchhhhhhhhhhcccCCCEEEEcCCcCCCCCceeeHHHHhh
Confidence 346789999999886555555555664 45554322 1111 4567889999853 334455555565543
Q ss_pred CCeEEecCCCcccccc---cCCCEEEeCCHHHHHHHHHHHHhCCCCCCcHHHHhcCCHHHHHHHHHHHHhc
Q 016975 237 GKIVVCANHPSNDFFK---QFPNCRTYDDRNGFVEATLKALAEEPALPTEAQRHQLSWESATERFLQVAEL 304 (379)
Q Consensus 237 G~PVI~t~~g~~e~i~---~~~~g~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~sw~~~~~~~~~~~~~ 304 (379)
-.+-+.-|...+..+. ...+-.++ |.++|.+.+.+-+..... .......-.+..+.++.+.|+.
T Consensus 252 ~~~r~~iDLAvPRdId~v~~~~~v~Ly-~iDdL~~i~~~n~~~R~~---~~~~ae~iI~~~~~~~~~~~~~ 318 (338)
T PRK00676 252 IPDRIVFDFNVPRTFPWSETPFPHRYL-DMDFISEWVQKHLQCRKE---VNNKHKLSLREAAYKQWESYEK 318 (338)
T ss_pred ccCcEEEEecCCCCCccccccCCcEEE-EhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 2223445554322222 22333444 555555544443332211 1111233456677777777774
No 351
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=24.02 E-value=4.1e+02 Score=21.86 Aligned_cols=102 Identities=14% Similarity=0.114 Sum_probs=54.2
Q ss_pred cceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcCh-HH---HHHHHHhcCCeeEEecCCCCHH--HHHhhc
Q 016975 141 AKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDF-NQ---IQEAAEKLKIVVRVYPGRDHAD--LIFHDY 214 (379)
Q Consensus 141 ~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~-~~---l~~~~~~~~l~v~~~g~~~~~~--~~~~~~ 214 (379)
+.+++++|.= .+|=+-+. +.+.|.+...++.++++++.+.. +. -.+..++.+ +.+....+..+ ..+..+
T Consensus 26 ~~v~il~G~G--nNGgDgl~-~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~ 100 (169)
T PF03853_consen 26 PRVLILCGPG--NNGGDGLV-AARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMG--IKIIELDSDEDLSEALEPA 100 (169)
T ss_dssp -EEEEEE-SS--HHHHHHHH-HHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT---EEESSCCGSGGGHHGSCE
T ss_pred CeEEEEECCC--CChHHHHH-HHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcC--CcEeeccccchhhcccccc
Confidence 5577788863 55555544 56666666666777778865442 22 223344444 34443322222 455678
Q ss_pred CEEEecCC--------CCcchhHHHHHHHcCCeEEecCCCc
Q 016975 215 KVFLNPST--------TDVVCTTTAEALAMGKIVVCANHPS 247 (379)
Q Consensus 215 dv~v~ps~--------~E~~~~~~~EAma~G~PVI~t~~g~ 247 (379)
|+.|=.-. .+.+--.+-..=.++.|||+-|+|+
T Consensus 101 dlIIDal~G~G~~~~l~~~~~~~i~~iN~~~~~viAiDiPS 141 (169)
T PF03853_consen 101 DLIIDALFGTGFSGPLRGPIAELIDWINASRAPVIAIDIPS 141 (169)
T ss_dssp SEEEEES-STTGGSCGSTCHHHHHHHHHHHCSEEEEESS-T
T ss_pred cEEEEecccCCCCCCcCHHHHHHHHHHhccCCcEEEecCCC
Confidence 88874321 1222223334446799999999954
No 352
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=23.94 E-value=4.7e+02 Score=22.48 Aligned_cols=78 Identities=19% Similarity=0.138 Sum_probs=39.3
Q ss_pred HHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHH-HHHhhcCEEEecCCCCcchhHHHHHHHcCC
Q 016975 160 LELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD-LIFHDYKVFLNPSTTDVVCTTTAEALAMGK 238 (379)
Q Consensus 160 i~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~-~~~~~~dv~v~ps~~E~~~~~~~EAma~G~ 238 (379)
+++++++++++|++ ++=+|.--+.+++++. .+.|-+..+-+.++.+- ++-+.+++...|--. .+.=+.+|+.+|.
T Consensus 43 ~~~I~~l~~~~~~~-~vGAGTVl~~e~a~~a-i~aGA~FivSP~~~~~vi~~a~~~~i~~iPG~~--TptEi~~A~~~Ga 118 (201)
T PRK06015 43 LDAIRAVAAEVEEA-IVGAGTILNAKQFEDA-AKAGSRFIVSPGTTQELLAAANDSDVPLLPGAA--TPSEVMALREEGY 118 (201)
T ss_pred HHHHHHHHHHCCCC-EEeeEeCcCHHHHHHH-HHcCCCEEECCCCCHHHHHHHHHcCCCEeCCCC--CHHHHHHHHHCCC
Confidence 44555555555552 2223334444555443 33443434334443333 666666777776432 2334667777776
Q ss_pred eEE
Q 016975 239 IVV 241 (379)
Q Consensus 239 PVI 241 (379)
-+|
T Consensus 119 ~~v 121 (201)
T PRK06015 119 TVL 121 (201)
T ss_pred CEE
Confidence 655
No 353
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=23.92 E-value=2.4e+02 Score=25.30 Aligned_cols=69 Identities=14% Similarity=0.188 Sum_probs=42.3
Q ss_pred CcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCC
Q 016975 172 GLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHP 246 (379)
Q Consensus 172 ~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g 246 (379)
++++..+-+ .+.+..++..+..+. . ...+.++++..+|+.+..+..+...-.+.+++..|+.||+...|
T Consensus 26 ~~elv~v~d-~~~~~a~~~a~~~~~--~---~~~~~~ell~~~DvVvi~a~~~~~~~~~~~al~~Gk~Vvv~s~g 94 (265)
T PRK13304 26 NAELYAFYD-RNLEKAENLASKTGA--K---ACLSIDELVEDVDLVVECASVNAVEEVVPKSLENGKDVIIMSVG 94 (265)
T ss_pred CeEEEEEEC-CCHHHHHHHHHhcCC--e---eECCHHHHhcCCCEEEEcCChHHHHHHHHHHHHcCCCEEEEchH
Confidence 455543333 333445555444332 1 12345566788999998776665555567788999999987653
No 354
>TIGR02536 eut_hyp ethanolamine utilization protein. This family of proteins is found in operons for the polyhedral organelle-based degradation of ethanolamine. This family is not found in proteobacterial species which otherwise have the same suite of genes in the eut operon. Proteobacteria have two genes that are not found in non-proteobacteria which may complement this genes function, a phosphotransacetylase (pfam01515) and the EutJ protein (TIGR02529) of unknown function.
Probab=23.55 E-value=3.5e+02 Score=23.41 Aligned_cols=38 Identities=11% Similarity=-0.094 Sum_probs=28.8
Q ss_pred HHhhcCEEEecCCC-Cc------------chhHHHHHHHcCCeEEecCCCc
Q 016975 210 IFHDYKVFLNPSTT-DV------------VCTTTAEALAMGKIVVCANHPS 247 (379)
Q Consensus 210 ~~~~~dv~v~ps~~-E~------------~~~~~~EAma~G~PVI~t~~g~ 247 (379)
..+.||+++.|... .. ..-.+++++..|+||++...|.
T Consensus 50 ~~~~~dillv~~Lt~n~lskIAlGi~d~~~~~~I~~~LL~GK~V~v~~eg~ 100 (207)
T TIGR02536 50 EQKLADILLVSRLSIKELNNISHGQETNEKEKFIIAFLLEGKPIYILKPGI 100 (207)
T ss_pred hhhcCCEEEEccCCHHHHHHHHccCCCCHHHHHHHHHHHCCCeEEEEeccc
Confidence 45789999999764 21 1245899999999999988654
No 355
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=23.54 E-value=4e+02 Score=21.52 Aligned_cols=65 Identities=14% Similarity=0.214 Sum_probs=45.5
Q ss_pred eEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHh-cCCeeEEecCCCCHH
Q 016975 143 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEK-LKIVVRVYPGRDHAD 208 (379)
Q Consensus 143 ~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~-~~l~v~~~g~~~~~~ 208 (379)
.++||.-.+ ..-+...++.++.++..+|+-+++++|=|-....++.+.+. .+.+++-+..-..++
T Consensus 61 ~vvfVSa~S-~~h~~~~~~~i~si~~~~P~~k~ilY~LgL~~~~i~~L~~~~~n~evr~Fn~s~YP~ 126 (142)
T PF07801_consen 61 DVVFVSATS-DNHFNESMKSISSIRKFYPNHKIILYDLGLSEEQIKKLKKNFCNVEVRKFNFSKYPK 126 (142)
T ss_pred ccEEEEEec-chHHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHhcCCceEEEECCCccCcH
Confidence 466777654 44566677777777777999999999988888888877664 455666554444443
No 356
>PF06345 Drf_DAD: DRF Autoregulatory Domain; InterPro: IPR010465 This domain is found in Diaphanous-related formins (Drfs). It binds the N-terminal GTPase-binding domain; this link is broken when GTP-bound Rho binds to the GBD and activates the protein. The addition of diaphanous activating domains (DAD) to mammalian cells induces actin filament formation, stabilises microtubules, and activates serum-response mediated transcription [].; PDB: 3O4X_H 3OBV_E 2BAP_C 2F31_B.
Probab=23.22 E-value=66 Score=14.68 Aligned_cols=10 Identities=40% Similarity=0.498 Sum_probs=7.5
Q ss_pred HHHHHHHcCC
Q 016975 229 TTAEALAMGK 238 (379)
Q Consensus 229 ~~~EAma~G~ 238 (379)
.++||+..|.
T Consensus 5 sllealqtg~ 14 (15)
T PF06345_consen 5 SLLEALQTGS 14 (15)
T ss_dssp HHHHHHHHST
T ss_pred HHHHHHHccC
Confidence 5788888775
No 357
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=23.10 E-value=5.4e+02 Score=22.94 Aligned_cols=72 Identities=17% Similarity=0.076 Sum_probs=42.2
Q ss_pred EEEEEcCCcCh---HHHHHHHHhcCCeeEEecCCCCHH---HHHhhcCEEEecCCCCc---chhHHHHHHHcCCeEEecC
Q 016975 174 EVDLYGNGEDF---NQIQEAAEKLKIVVRVYPGRDHAD---LIFHDYKVFLNPSTTDV---VCTTTAEALAMGKIVVCAN 244 (379)
Q Consensus 174 ~l~i~G~g~~~---~~l~~~~~~~~l~v~~~g~~~~~~---~~~~~~dv~v~ps~~E~---~~~~~~EAma~G~PVI~t~ 244 (379)
++.++|.|... ..+.......|.++...+...... ..+..-|++|.-|..-. .--.+-.|-..|.+||+--
T Consensus 130 ~I~i~G~G~s~~~A~~~~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dv~I~iS~sg~~~~~~~~~~~ak~~ga~iI~IT 209 (278)
T PRK11557 130 RIILTGIGASGLVAQNFAWKLMKIGINAVAERDMHALLATVQALSPDDLLLAISYSGERRELNLAADEALRVGAKVLAIT 209 (278)
T ss_pred eEEEEecChhHHHHHHHHHHHhhCCCeEEEcCChHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHHcCCCEEEEc
Confidence 68888987652 334444455666655432211111 34455699988876522 2234566778899998866
Q ss_pred C
Q 016975 245 H 245 (379)
Q Consensus 245 ~ 245 (379)
.
T Consensus 210 ~ 210 (278)
T PRK11557 210 G 210 (278)
T ss_pred C
Confidence 5
No 358
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=22.96 E-value=3e+02 Score=24.37 Aligned_cols=38 Identities=21% Similarity=0.336 Sum_probs=24.0
Q ss_pred ceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcC
Q 016975 142 KGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED 183 (379)
Q Consensus 142 ~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~ 183 (379)
..|+=+|++.-.-=++++++- +..+.++...++|+|..
T Consensus 5 iGiiKlGNig~s~~idl~lDE----rAdRedI~vrv~gsGaK 42 (277)
T PRK00994 5 IGIIKLGNIGMSPVIDLLLDE----RADREDIDVRVVGSGAK 42 (277)
T ss_pred EEEEEecccchHHHHHHHHHh----hhcccCceEEEeccCCC
Confidence 346667777554444444433 23357899999998886
No 359
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=22.73 E-value=4.2e+02 Score=21.54 Aligned_cols=36 Identities=11% Similarity=0.025 Sum_probs=24.4
Q ss_pred HHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 210 IFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 210 ~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
-+..+|+++..+..+.....+.+....+.+|-..+.
T Consensus 67 dl~~a~lViaaT~d~e~N~~i~~~a~~~~~vn~~d~ 102 (157)
T PRK06719 67 DIKDAHLIYAATNQHAVNMMVKQAAHDFQWVNVVSD 102 (157)
T ss_pred cCCCceEEEECCCCHHHHHHHHHHHHHCCcEEECCC
Confidence 367788888887776666666665555666665555
No 360
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=22.69 E-value=1.5e+02 Score=23.61 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=25.2
Q ss_pred EEEEcCCcChHHHHHHHHhcCCeeEEecCC
Q 016975 175 VDLYGNGEDFNQIQEAAEKLKIVVRVYPGR 204 (379)
Q Consensus 175 l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~ 204 (379)
|+|+|.|+.-..+-++++.+|.++.+....
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r 30 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPR 30 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCC
Confidence 689999999999999999999999888554
No 361
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.67 E-value=5.2e+02 Score=22.52 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=18.1
Q ss_pred EEEecCCCCcchhHHHHHH--HcCCeEEecCCC
Q 016975 216 VFLNPSTTDVVCTTTAEAL--AMGKIVVCANHP 246 (379)
Q Consensus 216 v~v~ps~~E~~~~~~~EAm--a~G~PVI~t~~g 246 (379)
+|+.....-+++ +++.+ ..|+|||+|+..
T Consensus 183 iFiSCTnlRt~e--ii~~lE~~~G~PVvsSN~A 213 (238)
T COG3473 183 IFISCTNLRTFE--IIEKLERDTGVPVVSSNQA 213 (238)
T ss_pred EEEEeeccccHH--HHHHHHHHhCCceeeccHH
Confidence 455444344444 34443 789999999973
No 362
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=22.59 E-value=5.2e+02 Score=22.51 Aligned_cols=40 Identities=13% Similarity=0.026 Sum_probs=24.4
Q ss_pred HHHHHHHHHhcCCcccceeecccCCCCCchHHHHHHhCCC
Q 016975 333 EASAYVHFLASGFETSRRAFGAIPGSLHPDEELCKELGLV 372 (379)
Q Consensus 333 ~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 372 (379)
.+...+..++...+....+|+.....-....+.+++.|+.
T Consensus 171 ~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~ 210 (277)
T cd06319 171 ETFDYTNDLLTANPDIRAIWLQGSDRYQGALDAIATAGKT 210 (277)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCccchHHHHHHHHcCCC
Confidence 3444555555555545566665544445677888888886
No 363
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=22.57 E-value=5e+02 Score=22.35 Aligned_cols=79 Identities=18% Similarity=0.128 Sum_probs=40.4
Q ss_pred HHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHH-HHHhhcCEEEecCCCCcchhHHHHHHHcC
Q 016975 159 LLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD-LIFHDYKVFLNPSTTDVVCTTTAEALAMG 237 (379)
Q Consensus 159 li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~-~~~~~~dv~v~ps~~E~~~~~~~EAma~G 237 (379)
.+++++++++++|++ .+=+|.--+.++.++..+ .|-+..+-+..+.+- +.-+.+++.+.|-- ..+.=+..|+.+|
T Consensus 46 a~~~i~~l~~~~~~~-~vGAGTVl~~~~a~~a~~-aGA~FivsP~~~~~v~~~~~~~~i~~iPG~--~TptEi~~A~~~G 121 (204)
T TIGR01182 46 ALDAIRLLRKEVPDA-LIGAGTVLNPEQLRQAVD-AGAQFIVSPGLTPELAKHAQDHGIPIIPGV--ATPSEIMLALELG 121 (204)
T ss_pred HHHHHHHHHHHCCCC-EEEEEeCCCHHHHHHHHH-cCCCEEECCCCCHHHHHHHHHcCCcEECCC--CCHHHHHHHHHCC
Confidence 344555555556653 344455555555554433 343433334443322 56666677777732 1233466677777
Q ss_pred CeEE
Q 016975 238 KIVV 241 (379)
Q Consensus 238 ~PVI 241 (379)
..+|
T Consensus 122 a~~v 125 (204)
T TIGR01182 122 ITAL 125 (204)
T ss_pred CCEE
Confidence 6555
No 364
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=22.51 E-value=7e+02 Score=25.08 Aligned_cols=98 Identities=9% Similarity=-0.007 Sum_probs=47.8
Q ss_pred HHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCC
Q 016975 159 LLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGK 238 (379)
Q Consensus 159 li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~ 238 (379)
+++++...++. .-++-++|.......++....-++.++..+...+..+ ....+.++.+-|.
T Consensus 86 il~al~~a~~~--~~~ia~vg~~~~~~~~~~~~~ll~~~i~~~~~~~~~e-----------------~~~~~~~l~~~G~ 146 (526)
T TIGR02329 86 VMQALARARRI--ASSIGVVTHQDTPPALRRFQAAFNLDIVQRSYVTEED-----------------ARSCVNDLRARGI 146 (526)
T ss_pred HHHHHHHHHhc--CCcEEEEecCcccHHHHHHHHHhCCceEEEEecCHHH-----------------HHHHHHHHHHCCC
Confidence 45566554332 2346666665555556655555555555444333333 2233455555555
Q ss_pred eEEecCCCccc-ccccCCCEEEeCCHHHHHHHHHHHHh
Q 016975 239 IVVCANHPSND-FFKQFPNCRTYDDRNGFVEATLKALA 275 (379)
Q Consensus 239 PVI~t~~g~~e-~i~~~~~g~~~~~~~~l~~~i~~~l~ 275 (379)
-+|.-+.-..+ --.-+-+|++..+.+++.+++.+++.
T Consensus 147 ~~viG~~~~~~~A~~~gl~~ili~s~esi~~a~~~A~~ 184 (526)
T TIGR02329 147 GAVVGAGLITDLAEQAGLHGVFLYSADSVRQAFDDALD 184 (526)
T ss_pred CEEECChHHHHHHHHcCCceEEEecHHHHHHHHHHHHH
Confidence 55554442222 12233445444445666666665543
No 365
>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []. It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....
Probab=22.42 E-value=2.3e+02 Score=27.83 Aligned_cols=130 Identities=15% Similarity=0.163 Sum_probs=64.1
Q ss_pred eEEEEE-ecccccCHHHHHHHHHHhHhhcCCcEEEEEc-CCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEE--
Q 016975 143 GAYYIG-KMVWSKGYKELLELLDDHQKELAGLEVDLYG-NGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFL-- 218 (379)
Q Consensus 143 ~il~vg-rl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G-~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v-- 218 (379)
+++.-| .+--.+-+..+-|..+.++++..+++|-|.= .|.-.-.+.=+..+-+..-+..-.+++..+-+.++|+.+
T Consensus 310 VvIVPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPGHMNVLLAEa~VpYd~~~emdeiN~~f~~~Dv~lVi 389 (463)
T PF02233_consen 310 VVIVPGYGMAVAQAQHAVAELADLLEERGVEVKFAIHPVAGRMPGHMNVLLAEANVPYDIVKEMDEINPDFPDTDVVLVI 389 (463)
T ss_dssp EEEEESHHHHHCTTHHHHHHHHHHHHHTT-EEEEEE-TTSSSSTTHHHHHHHHCT--GGGEEEHHHHGGGGGG-SEEEEE
T ss_pred eEEecCchHHHHHHHHHHHHHHHHHHhCCCEEEEEeccccCCCCCcceEEEEecCCCHHHHhhhhhcccchhcCCEEEEe
Confidence 444444 3444555666666666666655555555532 122222233333333221111111111115578888875
Q ss_pred ------ecCCCC-----cchhHHHHHHHcCCeEEecCC-Cc------ccccccCCCEEEeCCHHHHHHHHHH
Q 016975 219 ------NPSTTD-----VVCTTTAEALAMGKIVVCANH-PS------NDFFKQFPNCRTYDDRNGFVEATLK 272 (379)
Q Consensus 219 ------~ps~~E-----~~~~~~~EAma~G~PVI~t~~-g~------~e~i~~~~~g~~~~~~~~l~~~i~~ 272 (379)
||.-.| =+||+++|.--+..-||.-+. +. ++.+....+-.++-|.++-.+.+..
T Consensus 390 GANDvVNPaA~~d~~SpI~GMPil~v~~ak~Viv~Krsm~~Gyagv~NpLF~~~nt~MlfGDAk~~~~~l~~ 461 (463)
T PF02233_consen 390 GANDVVNPAAREDPNSPIYGMPILEVWKAKQVIVIKRSMSPGYAGVDNPLFYKDNTRMLFGDAKKTLEELVA 461 (463)
T ss_dssp S-SGGG-CHHCCSTTSTTTTSS---GGGSSEEEEEESSS--TTTS-S-GGGGSTTEEEEES-HHHHHHHHHH
T ss_pred ccccccCchhccCCCCCCCCCeecchhhcCeEEEEEcCCCCCCCCCCCcceecCCcEEEeccHHHHHHHHHH
Confidence 676443 289999999999998888776 21 4566665555777787776666554
No 366
>PF03284 PHZA_PHZB: Phenazine biosynthesis protein A/B; InterPro: IPR004964 The phenazine biosynthesis proteins A and B are involved in the biosynthesis of this antibiotic. Phenazine is a nitrogen-containing heterocyclic molecule with important implications in virulence, competition and biological control.; GO: 0017000 antibiotic biosynthetic process; PDB: 3EX9_A 3JUP_B 3DZL_A 3JUN_A 3JUO_A 3CNM_A 3JUM_B 3JUQ_A 3B4O_A 3B4P_B ....
Probab=22.04 E-value=46 Score=26.73 Aligned_cols=24 Identities=21% Similarity=-0.013 Sum_probs=11.7
Q ss_pred cCHHHHHHHHHHhHhhcCCcEEEE
Q 016975 154 KGYKELLELLDDHQKELAGLEVDL 177 (379)
Q Consensus 154 Kg~~~li~a~~~l~~~~~~~~l~i 177 (379)
+|.+.|-+-..-+.+-+|++...-
T Consensus 62 ~G~~~L~~havwslkcFPDWeW~n 85 (162)
T PF03284_consen 62 RGRDRLAEHAVWSLKCFPDWEWYN 85 (162)
T ss_dssp ESHHHHHHHHHHHHHHSTT-EEEE
T ss_pred EhHHHHHHHHHHHHHHCCCcEEEE
Confidence 455555554444445556655443
No 367
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=21.93 E-value=4.4e+02 Score=21.42 Aligned_cols=102 Identities=9% Similarity=-0.025 Sum_probs=57.6
Q ss_pred EEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHH---HHHh--hcCEEEecCC-CCcchhHHHHHHHcCCeEEecCC-
Q 016975 174 EVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHAD---LIFH--DYKVFLNPST-TDVVCTTTAEALAMGKIVVCANH- 245 (379)
Q Consensus 174 ~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~---~~~~--~~dv~v~ps~-~E~~~~~~~EAma~G~PVI~t~~- 245 (379)
+++++.+.+. ...+.+...... .....+.....+ ..+. ..|+++.-.. .+.-|..+++.+....|||....
T Consensus 3 ~ilivd~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~l~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~vi~~s~~ 81 (196)
T PRK10360 3 TVALIDDHLIVRSGFAQLLGLEP-DLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSVH 81 (196)
T ss_pred EEEEECCcHHHHHHHHHHHccCC-CcEEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHccCCCEEEEECC
Confidence 4666666554 334444443221 222223333333 2332 2477776543 24456777777776778776544
Q ss_pred Ccc----cccccCCCEEEeC--CHHHHHHHHHHHHhC
Q 016975 246 PSN----DFFKQFPNCRTYD--DRNGFVEATLKALAE 276 (379)
Q Consensus 246 g~~----e~i~~~~~g~~~~--~~~~l~~~i~~~l~~ 276 (379)
... +.+..+..+++.. +.+++.++|..++..
T Consensus 82 ~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 118 (196)
T PRK10360 82 DSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATG 118 (196)
T ss_pred CCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcC
Confidence 332 2345566677766 899999999988764
No 368
>PRK05279 N-acetylglutamate synthase; Validated
Probab=21.82 E-value=7e+02 Score=24.21 Aligned_cols=57 Identities=11% Similarity=0.044 Sum_probs=34.4
Q ss_pred cceEEEE-EecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEe
Q 016975 141 AKGAYYI-GKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVY 201 (379)
Q Consensus 141 ~~~il~v-grl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~ 201 (379)
+..++-+ |+....+++..+++.+..+....-++ +++.|.|+...+ ..+++++..++.
T Consensus 26 ~~~VIk~GG~~l~~~~~~~~~~~i~~l~~~g~~~-VlVHGgg~~i~~---~~~~~g~~~~~~ 83 (441)
T PRK05279 26 KTFVIMLGGEAIAHGNFSNIVHDIALLHSLGIRL-VLVHGARPQIEE---QLAARGIEPRYH 83 (441)
T ss_pred CEEEEEECchhccChhHHHHHHHHHHHHHCCCeE-EEECCCCHHHHH---HHHHcCCCceec
Confidence 3455555 56655667777777777776542222 556677766444 444666665665
No 369
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=21.72 E-value=5.9e+02 Score=22.88 Aligned_cols=119 Identities=11% Similarity=0.086 Sum_probs=67.6
Q ss_pred ecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeE---Ee-cC--CCCHH---HHHhhcCEEEe
Q 016975 149 KMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVR---VY-PG--RDHAD---LIFHDYKVFLN 219 (379)
Q Consensus 149 rl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~---~~-g~--~~~~~---~~~~~~dv~v~ 219 (379)
.+....|...+++.+.. .++++.|+-++.. ..++...+..++.-. +. +. .+..+ .++...+ +.
T Consensus 140 ~~~l~pg~~e~L~~L~~-----~gi~laIvSn~~~-~~~~~~L~~~gl~~~F~~vi~~~~~~~k~~~~~~~l~~~~--~~ 211 (273)
T PRK13225 140 ALQLFPGVADLLAQLRS-----RSLCLGILSSNSR-QNIEAFLQRQGLRSLFSVVQAGTPILSKRRALSQLVAREG--WQ 211 (273)
T ss_pred cCCcCCCHHHHHHHHHH-----CCCeEEEEeCCCH-HHHHHHHHHcCChhheEEEEecCCCCCCHHHHHHHHHHhC--cC
Confidence 34456777777766643 2577777766554 555666666665321 11 21 12223 2222222 23
Q ss_pred cCC---CCcchhHHHHHHHcCCeEEecCCCc--ccccccCCCEEEeCCHHHHHHHHHHHHh
Q 016975 220 PST---TDVVCTTTAEALAMGKIVVCANHPS--NDFFKQFPNCRTYDDRNGFVEATLKALA 275 (379)
Q Consensus 220 ps~---~E~~~~~~~EAma~G~PVI~t~~g~--~e~i~~~~~g~~~~~~~~l~~~i~~~l~ 275 (379)
|+. .+.-..-+.-|.++|..+|.-..|. .+.+......++++++.++.+.+.+++.
T Consensus 212 p~~~l~IGDs~~Di~aA~~AG~~~I~v~~g~~~~~~l~~~~ad~~i~~~~eL~~~~~~~~~ 272 (273)
T PRK13225 212 PAAVMYVGDETRDVEAARQVGLIAVAVTWGFNDRQSLVAACPDWLLETPSDLLQAVTQLMR 272 (273)
T ss_pred hhHEEEECCCHHHHHHHHHCCCeEEEEecCCCCHHHHHHCCCCEEECCHHHHHHHHHHHhc
Confidence 321 1333456788889999999876654 3333333345788899999888877653
No 370
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=21.67 E-value=3e+02 Score=24.33 Aligned_cols=33 Identities=21% Similarity=0.089 Sum_probs=20.6
Q ss_pred hcCEEEecC-CCCcchhHHHHHHHcCCeEEecCC
Q 016975 213 DYKVFLNPS-TTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 213 ~~dv~v~ps-~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
.+|.+|..+ ..+...-.+-++...|+|||+.+.
T Consensus 54 ~~dgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~ 87 (289)
T cd01540 54 GAKGFVICVPDVKLGPAIVAKAKAYNMKVVAVDD 87 (289)
T ss_pred CCCEEEEccCchhhhHHHHHHHHhCCCeEEEecC
Confidence 356665543 323333345667789999999875
No 371
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=21.67 E-value=4.3e+02 Score=24.46 Aligned_cols=73 Identities=4% Similarity=-0.005 Sum_probs=46.5
Q ss_pred EEe-cCCCCHH----HHHhhcCEEEecCCCCc-chhHHHHH-----HHcCCeEEecCC--Cc-ccccccCCCEEEeCCHH
Q 016975 199 RVY-PGRDHAD----LIFHDYKVFLNPSTTDV-VCTTTAEA-----LAMGKIVVCANH--PS-NDFFKQFPNCRTYDDRN 264 (379)
Q Consensus 199 ~~~-g~~~~~~----~~~~~~dv~v~ps~~E~-~~~~~~EA-----ma~G~PVI~t~~--g~-~e~i~~~~~g~~~~~~~ 264 (379)
.+. |.++.+. ..+..+|++|-..+.-| .+++++.. +-.|+|+|-|.. |. .++...+. ..|+.
T Consensus 216 ~~~~GP~paDt~F~~~~~~~~D~vlaMYHDQGlip~K~l~F~~gVnvTlGLP~iRTSpDHGTAfDIAGkg~----~A~~~ 291 (307)
T PRK03946 216 EIFFGPLVPDSAFTPNKRKKFNYYVAMYHDQGLAPLKALYFDESINVSLNLPILRTSVDHGTAFDIAYKNA----KANTK 291 (307)
T ss_pred CcccCCcCchhhcccccccCCCEEEECccccCchhheeeccCcceEEecCCCEeEecCCCCchhhhcCCCC----cCCHH
Confidence 344 8887777 55566799887655432 23333322 356999998877 65 55554441 24889
Q ss_pred HHHHHHHHHHh
Q 016975 265 GFVEATLKALA 275 (379)
Q Consensus 265 ~l~~~i~~~l~ 275 (379)
++.+||..+..
T Consensus 292 S~~~Ai~lA~~ 302 (307)
T PRK03946 292 SYLNAIKYAIN 302 (307)
T ss_pred HHHHHHHHHHH
Confidence 99999886643
No 372
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=21.58 E-value=3.9e+02 Score=21.99 Aligned_cols=82 Identities=15% Similarity=0.035 Sum_probs=52.3
Q ss_pred cceEEEEEe--cccc-cCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHH-HHHhhcCE
Q 016975 141 AKGAYYIGK--MVWS-KGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD-LIFHDYKV 216 (379)
Q Consensus 141 ~~~il~vgr--l~~~-Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~-~~~~~~dv 216 (379)
+.+.+|.+- ..+- -=...|.+.+.++....+.+.++++....+.+++.....+.+..=..++.-+... ++...+.+
T Consensus 34 KvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky~v 113 (157)
T KOG2501|consen 34 KVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKYEV 113 (157)
T ss_pred cEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhccc
Confidence 445555442 1232 3334677888888888888999999988887888777776544433444444333 77777776
Q ss_pred EEecCC
Q 016975 217 FLNPST 222 (379)
Q Consensus 217 ~v~ps~ 222 (379)
--.|+.
T Consensus 114 ~~iP~l 119 (157)
T KOG2501|consen 114 KGIPAL 119 (157)
T ss_pred CcCcee
Confidence 666653
No 373
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=21.46 E-value=2.3e+02 Score=20.15 Aligned_cols=50 Identities=14% Similarity=0.178 Sum_probs=28.5
Q ss_pred EEEEcCCcChH-----HHHHHHHhcCCeeEEe-cCCCCHHHHHhhcCEEEecCCCC
Q 016975 175 VDLYGNGEDFN-----QIQEAAEKLKIVVRVY-PGRDHADLIFHDYKVFLNPSTTD 224 (379)
Q Consensus 175 l~i~G~g~~~~-----~l~~~~~~~~l~v~~~-g~~~~~~~~~~~~dv~v~ps~~E 224 (379)
++++|.|-... .+++...+.+..+.+. ....+.++.+..+|+++.+....
T Consensus 4 livC~~G~~tS~~l~~~i~~~~~~~~i~~~v~~~~~~~~~~~~~~~Dliist~~~~ 59 (89)
T cd05566 4 LVACGTGVATSTVVASKVKELLKENGIDVKVEQCKIAEVPSLLDDADLIVSTTKVP 59 (89)
T ss_pred EEECCCCccHHHHHHHHHHHHHHHCCCceEEEEecHHHhhcccCCCcEEEEcCCcC
Confidence 67888877643 3556666666544433 12222223467889888776543
No 374
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=21.43 E-value=2.4e+02 Score=24.20 Aligned_cols=59 Identities=15% Similarity=0.086 Sum_probs=33.9
Q ss_pred HHHHHH-hcCCeeEEecCCCCHH-HHHhhcCEEEecCCCC-cc----hhHHHHHHHcCCeEEecCC
Q 016975 187 IQEAAE-KLKIVVRVYPGRDHAD-LIFHDYKVFLNPSTTD-VV----CTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 187 l~~~~~-~~~l~v~~~g~~~~~~-~~~~~~dv~v~ps~~E-~~----~~~~~EAma~G~PVI~t~~ 245 (379)
++++.+ ..+..+.+....+... +.++.+|++|+.+... .+ --.+.+++..|.++|+...
T Consensus 24 l~~ll~~~~~~~v~~~~~~~~~~~~~L~~~Dvvv~~~~~~~~l~~~~~~al~~~v~~Ggglv~lH~ 89 (217)
T PF06283_consen 24 LAQLLEESEGFEVTVTEDPDDLTPENLKGYDVVVFYNTGGDELTDEQRAALRDYVENGGGLVGLHG 89 (217)
T ss_dssp HHHHHHHTTCEEEEECCSGGCTSHHCHCT-SEEEEE-SSCCGS-HHHHHHHHHHHHTT-EEEEEGG
T ss_pred HHHHhccCCCEEEEEEeCcccCChhHhcCCCEEEEECCCCCcCCHHHHHHHHHHHHcCCCEEEEcc
Confidence 444444 3344555443322222 4589999999877652 22 2357888999999999874
No 375
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=21.13 E-value=5.4e+02 Score=22.22 Aligned_cols=61 Identities=15% Similarity=-0.024 Sum_probs=32.5
Q ss_pred hcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCcccccccCCCEEEeCCHHHHHHHHHHHHhC
Q 016975 213 DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAE 276 (379)
Q Consensus 213 ~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~~ 276 (379)
.+|.++..+..+...-.+-++...|+|||..+....+ .....+..++.+.-..+...++..
T Consensus 56 ~vdgiii~~~~~~~~~~~~~~~~~~ipvv~i~~~~~~---~~~~~V~~d~~~~g~~a~~~l~~~ 116 (270)
T cd01545 56 RVDGVILTPPLSDNPELLDLLDEAGVPYVRIAPGTPD---PDSPCVRIDDRAAAREMTRHLIDL 116 (270)
T ss_pred CCCEEEEeCCCCCccHHHHHHHhcCCCEEEEecCCCC---CCCCeEEeccHHHHHHHHHHHHHC
Confidence 3566555433322222233456789999987653211 112234455666666666666654
No 376
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=20.73 E-value=6.2e+02 Score=23.04 Aligned_cols=98 Identities=13% Similarity=0.073 Sum_probs=49.8
Q ss_pred cceEEEEEecccccCHHHHHHHHHHhHhhcC-----CcEEEEEc-------CCcChHH-HHHHHHhcCCeeEEecCCCCH
Q 016975 141 AKGAYYIGKMVWSKGYKELLELLDDHQKELA-----GLEVDLYG-------NGEDFNQ-IQEAAEKLKIVVRVYPGRDHA 207 (379)
Q Consensus 141 ~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~-----~~~l~i~G-------~g~~~~~-l~~~~~~~~l~v~~~g~~~~~ 207 (379)
...|+++|--...=|+..++-.+-. +.+- .-+++++. +.++... -+.++++.+. +....-
T Consensus 25 d~~iv~~GAGsAg~gia~ll~~~~~--~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~~~-----~~~~~L 97 (279)
T cd05312 25 DQRILFLGAGSAGIGIADLIVSAMV--REGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKDEE-----KEGKSL 97 (279)
T ss_pred hcEEEEECcCHHHHHHHHHHHHHHH--HcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhcCc-----ccCCCH
Confidence 4478888877777777766544311 1110 01444444 2222222 2233333221 222333
Q ss_pred HHHHh--hcCEEEecCC-CCcchhHHHHHHH--cCCeEEecCC
Q 016975 208 DLIFH--DYKVFLNPST-TDVVCTTTAEALA--MGKIVVCANH 245 (379)
Q Consensus 208 ~~~~~--~~dv~v~ps~-~E~~~~~~~EAma--~G~PVI~t~~ 245 (379)
.+.++ ..|++|=.|. ...|.--++++|+ |-.|+|-.-.
T Consensus 98 ~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLS 140 (279)
T cd05312 98 LEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALS 140 (279)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECC
Confidence 46777 6688887774 3456666777776 4556665443
No 377
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=20.53 E-value=4.6e+02 Score=22.60 Aligned_cols=118 Identities=15% Similarity=0.148 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeE---EecCCC---CHHHHH-----hhcCEEEecCCC
Q 016975 155 GYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVR---VYPGRD---HADLIF-----HDYKVFLNPSTT 223 (379)
Q Consensus 155 g~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~---~~g~~~---~~~~~~-----~~~dv~v~ps~~ 223 (379)
..+.+++.+.... ..+-++++.........+.+..++.|..+. ++.... ...... ...|+++++|..
T Consensus 110 ~~~~l~~~l~~~~--~~~~~ili~~~~~~~~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~~~~~~~d~ivftS~~ 187 (249)
T PRK05928 110 ESSELLLELPELL--LKGKRVLYLRGNGGREVLGDTLEERGAEVDECEVYERVPPKLDGAELLARLQSGEVDAVIFTSPS 187 (249)
T ss_pred cChHHHHhChhhh--cCCCEEEEECCCCCHHHHHHHHHHCCCEEeEEEEEEeeCCCCChHHHHHHHHhCCCCEEEECCHH
Confidence 4456666665532 234567776666666778777777776543 222211 112222 367999999854
Q ss_pred --CcchhHHHHH----HHcCCeEEecCCCcccccccCC-C-EEEeC--CHHHHHHHHHHHH
Q 016975 224 --DVVCTTTAEA----LAMGKIVVCANHPSNDFFKQFP-N-CRTYD--DRNGFVEATLKAL 274 (379)
Q Consensus 224 --E~~~~~~~EA----ma~G~PVI~t~~g~~e~i~~~~-~-g~~~~--~~~~l~~~i~~~l 274 (379)
+.|--.+-+. ...+++++|......+.+.... . -++.+ +.+++.++|.+.+
T Consensus 188 ~v~~~~~~~~~~~~~~~~~~~~~~aiG~~Ta~~l~~~G~~~~~~~~~~~~~~l~~~l~~~~ 248 (249)
T PRK05928 188 TVRAFFSLAPELGRREWLLSCKAVVIGERTAEALRELGIKVIIVPDSADNEALLRALKELL 248 (249)
T ss_pred HHHHHHHHhcccchhHHHhCCeEEEeCHHHHHHHHHcCCCcceecCCCChHHHHHHHHHhc
Confidence 2221111111 1236677775554455544432 1 22322 7888888877653
No 378
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=20.53 E-value=7.9e+02 Score=23.87 Aligned_cols=41 Identities=20% Similarity=0.114 Sum_probs=29.9
Q ss_pred EEEEEecc-cccCHHHHHHH-HHHhHhhcCCcEEEEEcCCcCh
Q 016975 144 AYYIGKMV-WSKGYKELLEL-LDDHQKELAGLEVDLYGNGEDF 184 (379)
Q Consensus 144 il~vgrl~-~~Kg~~~li~a-~~~l~~~~~~~~l~i~G~g~~~ 184 (379)
|+-+|... ...|-+.++.+ +..+++..|++.+++.-..|..
T Consensus 3 i~i~G~~g~~N~GdeAil~~ii~~l~~~~p~~~i~v~S~~P~~ 45 (426)
T PRK10017 3 LLILGNHTCGNRGDSAILRGLLDAINILNPHAEVDVMSRYPVS 45 (426)
T ss_pred EEEEccccCCCccHHHHHHHHHHHHHhhCCCCeEEEEecCccc
Confidence 56666554 36787777765 6677788899999999876664
No 379
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=20.44 E-value=1.4e+02 Score=26.59 Aligned_cols=36 Identities=22% Similarity=0.194 Sum_probs=31.3
Q ss_pred cCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCC
Q 016975 170 LAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRD 205 (379)
Q Consensus 170 ~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~ 205 (379)
.|..+++|+|.|+.-..+-++++.++.+|.+....+
T Consensus 98 ~p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~ 133 (246)
T TIGR02964 98 PPAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSRE 133 (246)
T ss_pred CCCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCc
Confidence 367899999999999999999999999999886443
No 380
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=20.41 E-value=3.3e+02 Score=25.48 Aligned_cols=73 Identities=11% Similarity=0.022 Sum_probs=46.7
Q ss_pred eEEecCCCCHH----HHHhhcCEEEecCCCCc-chhHHHHH-----HHcCCeEEecCC--Cc-ccccccCCCEEEeCCHH
Q 016975 198 VRVYPGRDHAD----LIFHDYKVFLNPSTTDV-VCTTTAEA-----LAMGKIVVCANH--PS-NDFFKQFPNCRTYDDRN 264 (379)
Q Consensus 198 v~~~g~~~~~~----~~~~~~dv~v~ps~~E~-~~~~~~EA-----ma~G~PVI~t~~--g~-~e~i~~~~~g~~~~~~~ 264 (379)
+.+.|.++.+. .....+|++|-..+.-| -+++++.. +-.|+|+|-|.. |. .++...+. -|+.
T Consensus 236 i~v~GP~paDt~F~~~~~~~~D~vvaMYHDQGliP~K~l~F~~gVNvTlGLP~iRTSvDHGTAfDIAGkg~-----A~~~ 310 (329)
T PRK01909 236 IDARGPYPADTLFQPRYLEDADCVLAMFHDQGLPVLKYATFGEGINVTLGLPIIRTSVDHGTALDLAGTGR-----ADPG 310 (329)
T ss_pred CCccCCCCchhhcccccccCCCEEEEccccccchhheecccCcceEEecCCCeeEeCCCCcchhhhhcCCC-----CCHH
Confidence 34568887777 44456799887654432 23333322 356999998877 65 55554432 4899
Q ss_pred HHHHHHHHHHh
Q 016975 265 GFVEATLKALA 275 (379)
Q Consensus 265 ~l~~~i~~~l~ 275 (379)
++.+||..+..
T Consensus 311 S~~~Ai~lA~~ 321 (329)
T PRK01909 311 SMIAAIDTAVT 321 (329)
T ss_pred HHHHHHHHHHH
Confidence 99999887643
No 381
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=20.39 E-value=5.6e+02 Score=22.07 Aligned_cols=42 Identities=12% Similarity=0.090 Sum_probs=24.5
Q ss_pred HHHHHHHHHhcCCcccceeecccCCCCCchHHHHHHhCCCCC
Q 016975 333 EASAYVHFLASGFETSRRAFGAIPGSLHPDEELCKELGLVTP 374 (379)
Q Consensus 333 ~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 374 (379)
.+...+..++...+....+|+.....-....+.+++.|+..|
T Consensus 163 ~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~~p 204 (268)
T cd01575 163 LGRELLAELLARWPDLDAVFCSNDDLALGALFECQRRGISVP 204 (268)
T ss_pred HHHHHHHHHHhCCCCCCEEEECCcHHHHHHHHHHHHhCCCCC
Confidence 344455555555544556666544444456777788887655
No 382
>PRK06487 glycerate dehydrogenase; Provisional
Probab=20.12 E-value=3.5e+02 Score=25.04 Aligned_cols=76 Identities=16% Similarity=0.194 Sum_probs=50.0
Q ss_pred CcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCC--------CHHHHHhhcCEEEe--cCCCCc---chhHHHHHHHcCC
Q 016975 172 GLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRD--------HADLIFHDYKVFLN--PSTTDV---VCTTTAEALAMGK 238 (379)
Q Consensus 172 ~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~--------~~~~~~~~~dv~v~--ps~~E~---~~~~~~EAma~G~ 238 (379)
+-++.|+|-|.--..+-+.++..|.+|..+.... .-+++++.||++++ |...|+ ++-..+..|--|.
T Consensus 148 gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~~~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga 227 (317)
T PRK06487 148 GKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRPARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGA 227 (317)
T ss_pred CCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCcccccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCe
Confidence 3478888888877777777888887776553211 12389999999875 433454 4455777776666
Q ss_pred eEEecCCCc
Q 016975 239 IVVCANHPS 247 (379)
Q Consensus 239 PVI~t~~g~ 247 (379)
-+|-+.-|.
T Consensus 228 ~lIN~aRG~ 236 (317)
T PRK06487 228 LLINTARGG 236 (317)
T ss_pred EEEECCCcc
Confidence 666655543
No 383
>PRK06932 glycerate dehydrogenase; Provisional
Probab=20.09 E-value=3.6e+02 Score=24.89 Aligned_cols=76 Identities=12% Similarity=0.167 Sum_probs=49.7
Q ss_pred CcEEEEEcCCcChHHHHHHHHhcCCeeEEecCC---------CCHHHHHhhcCEEEe--cCCCCc---chhHHHHHHHcC
Q 016975 172 GLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGR---------DHADLIFHDYKVFLN--PSTTDV---VCTTTAEALAMG 237 (379)
Q Consensus 172 ~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~---------~~~~~~~~~~dv~v~--ps~~E~---~~~~~~EAma~G 237 (379)
+-++.|+|-|.--..+-+.++.+|.+|..+... ..-+++++.||++++ |...|+ ++-..++.|--|
T Consensus 147 gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~~~~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~g 226 (314)
T PRK06932 147 GSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASVCREGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPT 226 (314)
T ss_pred CCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccccccccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCC
Confidence 457888888877677777777777776655321 122389999999875 444455 444577777666
Q ss_pred CeEEecCCCc
Q 016975 238 KIVVCANHPS 247 (379)
Q Consensus 238 ~PVI~t~~g~ 247 (379)
.-+|-+.-|.
T Consensus 227 a~lIN~aRG~ 236 (314)
T PRK06932 227 AFLINTGRGP 236 (314)
T ss_pred eEEEECCCcc
Confidence 6666665543
No 384
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=20.05 E-value=5.6e+02 Score=24.79 Aligned_cols=92 Identities=15% Similarity=0.155 Sum_probs=56.7
Q ss_pred cccCHHHHHHHHHHhH-hh----cCCcEEEEEcCC--------cChHHHHHHHHhcCCeeEEe--cCCCCHH-HHHhhcC
Q 016975 152 WSKGYKELLELLDDHQ-KE----LAGLEVDLYGNG--------EDFNQIQEAAEKLKIVVRVY--PGRDHAD-LIFHDYK 215 (379)
Q Consensus 152 ~~Kg~~~li~a~~~l~-~~----~~~~~l~i~G~g--------~~~~~l~~~~~~~~l~v~~~--g~~~~~~-~~~~~~d 215 (379)
...|++..++++-+.. .. ..+-.+-|+|.. .|..+++++.++.|+++... ++..-++ .-+..|.
T Consensus 136 ~~~G~~~a~~al~~~~~~~~~~~~~~~~VNliG~~~~~~~~~~~d~~ei~~lL~~~Gi~v~~~~~~~~~~~ei~~~~~A~ 215 (426)
T cd01972 136 WRSGFDAAFHGILRHLVPPQDPTKQEDSVNIIGLWGGPERTEQEDVDEFKRLLNELGLRVNAIIAGGCSVEELERASEAA 215 (426)
T ss_pred HhHHHHHHHHHHHHHhcCCCCCCCCCCCEEEEccCCCccccccccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCC
Confidence 4578888777765432 11 112246677733 34688999999999977655 3333333 4444455
Q ss_pred EEEecCCCCcchhHHHHHH--HcCCeEEecCC
Q 016975 216 VFLNPSTTDVVCTTTAEAL--AMGKIVVCANH 245 (379)
Q Consensus 216 v~v~ps~~E~~~~~~~EAm--a~G~PVI~t~~ 245 (379)
+-|..+. .+|..+.+.| -+|.|.+....
T Consensus 216 lniv~~~--~~g~~~a~~Lee~~GiP~~~~~~ 245 (426)
T cd01972 216 ANVTLCL--DLGYYLGAALEQRFGVPEIKAPQ 245 (426)
T ss_pred EEEEECh--hHHHHHHHHHHHHhCCCeEecCC
Confidence 5554432 3567788887 58999997643
Done!