Query 016975
Match_columns 379
No_of_seqs 302 out of 2199
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 06:53:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016975.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016975hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3okp_A GDP-mannose-dependent a 100.0 3.7E-34 1.3E-38 272.2 21.8 276 19-307 76-381 (394)
2 2jjm_A Glycosyl transferase, g 100.0 1.1E-33 3.7E-38 269.6 20.5 278 20-306 90-386 (394)
3 2x6q_A Trehalose-synthase TRET 100.0 1.6E-33 5.4E-38 270.4 20.6 269 21-304 118-413 (416)
4 3fro_A GLGA glycogen synthase; 100.0 5.1E-33 1.8E-37 267.9 20.3 273 27-306 120-431 (439)
5 3c48_A Predicted glycosyltrans 100.0 1.6E-32 5.6E-37 265.0 22.1 277 29-309 122-429 (438)
6 3s28_A Sucrose synthase 1; gly 100.0 5.5E-32 1.9E-36 275.7 22.4 276 27-305 405-769 (816)
7 2r60_A Glycosyl transferase, g 100.0 1.9E-32 6.4E-37 269.3 15.7 283 21-307 110-461 (499)
8 2gek_A Phosphatidylinositol ma 100.0 7E-33 2.4E-37 264.6 12.0 270 20-308 98-386 (406)
9 2qzs_A Glycogen synthase; glyc 100.0 5.9E-32 2E-36 264.7 17.6 210 94-306 205-477 (485)
10 1rzu_A Glycogen synthase 1; gl 100.0 3.8E-32 1.3E-36 266.0 15.9 210 94-306 207-476 (485)
11 3oy2_A Glycosyltransferase B73 100.0 2.5E-32 8.4E-37 261.8 10.8 267 21-308 73-393 (413)
12 2iuy_A Avigt4, glycosyltransfe 100.0 4.8E-32 1.6E-36 253.3 11.8 243 20-306 75-336 (342)
13 3vue_A GBSS-I, granule-bound s 100.0 6.8E-31 2.3E-35 259.1 18.9 211 93-305 241-511 (536)
14 2iw1_A Lipopolysaccharide core 100.0 1.2E-30 4.1E-35 246.3 13.3 211 93-304 136-370 (374)
15 2hy7_A Glucuronosyltransferase 100.0 1.4E-28 4.7E-33 235.4 13.9 238 29-308 124-382 (406)
16 2x0d_A WSAF; GT4 family, trans 99.9 8.5E-28 2.9E-32 230.1 12.4 191 96-303 197-407 (413)
17 3qhp_A Type 1 capsular polysac 99.9 2E-27 6.8E-32 198.6 10.9 154 141-297 2-166 (166)
18 1uqt_A Alpha, alpha-trehalose- 99.9 6.8E-27 2.3E-31 227.0 14.2 189 112-305 221-454 (482)
19 2bfw_A GLGA glycogen synthase; 99.9 1.5E-26 5E-31 199.3 13.8 162 116-279 4-184 (200)
20 2vsy_A XCC0866; transferase, g 99.9 2.1E-26 7.3E-31 229.6 8.8 257 20-306 273-560 (568)
21 3beo_A UDP-N-acetylglucosamine 99.9 1.1E-25 3.9E-30 212.4 10.3 264 20-303 86-374 (375)
22 3nb0_A Glycogen [starch] synth 99.9 7.7E-24 2.6E-28 207.3 18.8 98 209-306 514-634 (725)
23 2f9f_A First mannosyl transfer 99.9 2.6E-24 9E-29 181.9 12.5 138 138-279 20-165 (177)
24 1vgv_A UDP-N-acetylglucosamine 99.9 1.8E-25 6.1E-30 211.9 3.9 270 19-305 76-376 (384)
25 1f0k_A MURG, UDP-N-acetylgluco 99.9 4E-24 1.4E-28 201.1 12.6 249 20-305 87-357 (364)
26 3t5t_A Putative glycosyltransf 99.9 5.6E-23 1.9E-27 197.6 19.4 263 28-305 148-473 (496)
27 2xci_A KDO-transferase, 3-deox 99.9 1.8E-21 6E-26 184.0 15.0 231 20-286 102-357 (374)
28 1v4v_A UDP-N-acetylglucosamine 99.9 3.8E-22 1.3E-26 188.5 6.7 264 20-304 82-363 (376)
29 3rhz_A GTF3, nucleotide sugar 99.8 2.3E-19 7.8E-24 166.4 9.6 227 28-285 73-313 (339)
30 3dzc_A UDP-N-acetylglucosamine 99.7 5.6E-17 1.9E-21 154.2 7.3 266 19-302 101-394 (396)
31 3ot5_A UDP-N-acetylglucosamine 99.6 1.8E-16 6.1E-21 151.0 6.4 266 19-303 104-393 (403)
32 3otg_A CALG1; calicheamicin, T 99.6 3.2E-15 1.1E-19 142.5 13.2 262 19-304 120-409 (412)
33 3s2u_A UDP-N-acetylglucosamine 99.5 1.1E-13 3.7E-18 130.1 14.6 237 20-286 83-336 (365)
34 2iyf_A OLED, oleandomycin glyc 99.5 1.3E-13 4.5E-18 132.3 13.6 154 141-305 233-401 (430)
35 3tsa_A SPNG, NDP-rhamnosyltran 99.4 3.3E-13 1.1E-17 127.7 11.2 153 141-303 219-388 (391)
36 4hwg_A UDP-N-acetylglucosamine 99.4 1.8E-12 6.2E-17 122.3 12.7 236 20-279 85-345 (385)
37 4fzr_A SSFS6; structural genom 99.4 1.4E-12 4.8E-17 123.8 10.8 146 140-299 227-396 (398)
38 3oti_A CALG3; calicheamicin, T 99.2 2.2E-11 7.5E-16 115.6 8.3 151 141-302 233-396 (398)
39 3ia7_A CALG4; glycosysltransfe 99.2 7.6E-11 2.6E-15 111.6 11.9 149 141-303 232-398 (402)
40 2p6p_A Glycosyl transferase; X 99.2 1.6E-10 5.5E-15 108.9 13.4 122 141-277 211-348 (384)
41 3rsc_A CALG2; TDP, enediyne, s 99.1 3.5E-10 1.2E-14 107.7 13.8 149 141-303 248-413 (415)
42 3q3e_A HMW1C-like glycosyltran 99.1 8E-10 2.8E-14 108.2 12.1 135 143-279 441-591 (631)
43 2o6l_A UDP-glucuronosyltransfe 99.0 6E-10 2.1E-14 92.6 9.3 120 141-277 22-155 (170)
44 2yjn_A ERYCIII, glycosyltransf 98.9 2.5E-09 8.6E-14 102.8 7.3 149 141-303 268-435 (441)
45 2c4m_A Glycogen phosphorylase; 98.7 5.4E-07 1.9E-11 90.2 16.4 165 138-305 513-719 (796)
46 2iya_A OLEI, oleandomycin glyc 98.6 2.8E-07 9.7E-12 87.8 11.0 126 141-278 256-391 (424)
47 4amg_A Snogd; transferase, pol 98.5 1.6E-07 5.6E-12 88.6 6.4 126 142-278 239-370 (400)
48 2gj4_A Glycogen phosphorylase, 98.4 9.6E-07 3.3E-11 88.7 11.4 132 138-270 547-710 (824)
49 1l5w_A Maltodextrin phosphoryl 98.4 6E-07 2.1E-11 89.9 9.8 167 138-305 523-730 (796)
50 3h4t_A Glycosyltransferase GTF 98.4 7.2E-07 2.4E-11 84.6 9.7 147 141-303 222-382 (404)
51 1iir_A Glycosyltransferase GTF 98.3 6.8E-07 2.3E-11 85.0 6.2 120 141-277 239-369 (415)
52 1rrv_A Glycosyltransferase GTF 98.1 2.3E-06 8E-11 81.3 5.1 121 141-278 238-371 (416)
53 4gyw_A UDP-N-acetylglucosamine 98.1 2.8E-05 9.5E-10 79.1 12.5 162 143-305 523-705 (723)
54 3hbm_A UDP-sugar hydrolase; PS 97.4 0.0003 1E-08 62.8 7.9 93 142-245 159-252 (282)
55 2c1x_A UDP-glucose flavonoid 3 96.9 0.003 1E-07 60.5 9.1 126 141-277 272-413 (456)
56 2jzc_A UDP-N-acetylglucosamine 96.7 0.0035 1.2E-07 53.8 6.9 74 195-273 113-196 (224)
57 3hbf_A Flavonoid 3-O-glucosylt 96.5 0.014 4.9E-07 55.6 10.9 127 143-276 276-414 (454)
58 1psw_A ADP-heptose LPS heptosy 96.5 0.0075 2.6E-07 55.2 8.3 97 141-244 181-287 (348)
59 2acv_A Triterpene UDP-glucosyl 96.3 0.031 1.1E-06 53.5 12.0 127 141-275 277-424 (463)
60 2pq6_A UDP-glucuronosyl/UDP-gl 96.2 0.042 1.5E-06 52.8 12.4 78 195-277 352-440 (482)
61 1ygp_A Yeast glycogen phosphor 95.7 0.095 3.3E-06 52.9 12.3 130 139-268 598-768 (879)
62 3tov_A Glycosyl transferase fa 95.4 0.089 3E-06 48.3 10.5 152 142-303 187-346 (349)
63 2gt1_A Lipopolysaccharide hept 93.5 0.21 7.1E-06 45.1 8.1 127 142-276 180-322 (326)
64 2vch_A Hydroquinone glucosyltr 91.0 1.8 6.1E-05 41.4 11.5 76 198-276 341-429 (480)
65 3l7i_A Teichoic acid biosynthe 87.4 1.1 3.8E-05 45.3 7.4 171 94-275 479-682 (729)
66 3kke_A LACI family transcripti 83.9 21 0.00071 31.0 13.4 150 213-375 71-225 (303)
67 3k9c_A Transcriptional regulat 83.7 18 0.00061 31.2 12.8 145 214-375 67-213 (289)
68 3gt7_A Sensor protein; structu 83.5 12 0.00041 28.7 10.4 108 172-279 7-130 (154)
69 3tb6_A Arabinose metabolism tr 80.7 22 0.00074 30.6 12.2 195 155-375 29-229 (298)
70 3egc_A Putative ribose operon 77.5 25 0.00085 30.2 11.5 62 213-279 64-126 (291)
71 2zay_A Response regulator rece 77.0 21 0.00072 26.8 9.8 107 171-277 7-129 (147)
72 3g85_A Transcriptional regulat 75.8 24 0.0008 30.3 10.8 149 213-375 68-216 (289)
73 3ehd_A Uncharacterized conserv 75.6 7.4 0.00025 31.0 6.6 66 209-274 65-161 (162)
74 3dbi_A Sugar-binding transcrip 72.7 49 0.0017 29.1 13.2 151 213-375 119-270 (338)
75 1e2b_A Enzyme IIB-cellobiose; 72.0 5 0.00017 29.5 4.5 67 175-242 7-80 (106)
76 3k4h_A Putative transcriptiona 71.7 47 0.0016 28.3 12.6 151 213-375 69-220 (292)
77 3cg4_A Response regulator rece 71.4 28 0.00095 25.8 9.1 105 171-275 6-126 (142)
78 3qk7_A Transcriptional regulat 71.0 50 0.0017 28.4 12.1 151 213-375 65-215 (294)
79 1vi6_A 30S ribosomal protein S 70.5 7.3 0.00025 32.4 5.6 92 152-245 49-146 (208)
80 3jte_A Response regulator rece 69.6 32 0.0011 25.6 10.4 104 173-276 4-123 (143)
81 3grc_A Sensor protein, kinase; 69.2 32 0.0011 25.4 11.2 106 172-277 6-128 (140)
82 3gv0_A Transcriptional regulat 68.1 56 0.0019 27.8 12.1 152 212-375 65-216 (288)
83 3hzh_A Chemotaxis response reg 67.4 37 0.0013 25.8 9.2 103 173-275 37-156 (157)
84 3jy6_A Transcriptional regulat 66.9 36 0.0012 28.9 9.9 147 213-375 63-209 (276)
85 3cnb_A DNA-binding response re 66.7 36 0.0012 25.1 10.6 107 172-278 8-132 (143)
86 3h5o_A Transcriptional regulat 66.3 57 0.002 28.7 11.4 134 230-375 134-267 (339)
87 2qr3_A Two-component system re 66.2 30 0.001 25.5 8.3 106 172-277 3-127 (140)
88 4dad_A Putative pilus assembly 64.3 40 0.0014 25.1 8.7 104 172-277 20-142 (146)
89 3gl9_A Response regulator; bet 63.6 39 0.0013 24.4 10.0 102 174-275 4-121 (122)
90 3hdg_A Uncharacterized protein 63.4 41 0.0014 24.6 9.0 105 172-276 7-125 (137)
91 3h5i_A Response regulator/sens 63.2 43 0.0015 24.8 10.2 105 172-276 5-124 (140)
92 4f3y_A DHPR, dihydrodipicolina 62.4 15 0.00051 32.0 6.3 43 205-247 65-107 (272)
93 1k68_A Phytochrome response re 62.4 43 0.0015 24.4 10.0 103 173-275 3-130 (140)
94 2f62_A Nucleoside 2-deoxyribos 62.1 57 0.0019 25.8 9.9 36 209-244 63-105 (161)
95 3lua_A Response regulator rece 61.7 43 0.0015 24.7 8.4 107 172-278 4-129 (140)
96 3lte_A Response regulator; str 61.6 43 0.0015 24.3 10.2 105 172-276 6-125 (132)
97 2iks_A DNA-binding transcripti 61.2 77 0.0026 27.0 11.2 149 213-375 76-225 (293)
98 2qxy_A Response regulator; reg 61.0 47 0.0016 24.5 9.2 108 172-279 4-124 (142)
99 4fb5_A Probable oxidoreductase 60.8 29 0.00098 31.4 8.4 100 141-245 25-126 (393)
100 3nbm_A PTS system, lactose-spe 60.2 22 0.00074 26.1 5.9 70 175-245 10-86 (108)
101 1fy2_A Aspartyl dipeptidase; s 59.8 39 0.0013 28.4 8.3 89 156-247 17-123 (229)
102 1qkk_A DCTD, C4-dicarboxylate 59.1 47 0.0016 25.0 8.3 105 172-276 3-121 (155)
103 2pln_A HP1043, response regula 59.0 50 0.0017 24.2 9.5 103 171-276 17-133 (137)
104 1rcu_A Conserved hypothetical 58.9 14 0.00049 30.4 5.2 62 209-272 114-191 (195)
105 2l2q_A PTS system, cellobiose- 58.7 49 0.0017 24.0 8.2 90 175-275 8-104 (109)
106 3hdv_A Response regulator; PSI 58.7 50 0.0017 24.1 10.5 106 172-277 7-128 (136)
107 3heb_A Response regulator rece 58.7 55 0.0019 24.5 9.1 104 172-275 4-134 (152)
108 4e7p_A Response regulator; DNA 58.4 56 0.0019 24.5 10.2 104 173-277 21-141 (150)
109 1h05_A 3-dehydroquinate dehydr 58.3 22 0.00074 27.6 5.7 91 185-275 34-142 (146)
110 2gkg_A Response regulator homo 58.2 48 0.0016 23.6 9.1 105 173-277 6-126 (127)
111 2qsj_A DNA-binding response re 57.9 57 0.002 24.5 8.6 107 172-278 3-126 (154)
112 3t6k_A Response regulator rece 57.8 54 0.0018 24.1 10.2 106 172-277 4-125 (136)
113 3u80_A 3-dehydroquinate dehydr 57.8 30 0.001 27.0 6.4 89 186-274 37-146 (151)
114 3bch_A 40S ribosomal protein S 57.4 10 0.00035 32.5 4.2 94 151-245 83-182 (253)
115 3j20_B 30S ribosomal protein S 57.0 16 0.00054 30.2 5.1 91 151-243 44-140 (202)
116 3uuw_A Putative oxidoreductase 56.7 38 0.0013 29.7 8.1 70 170-245 29-98 (308)
117 2iz6_A Molybdenum cofactor car 56.0 10 0.00034 30.7 3.7 66 209-276 103-174 (176)
118 4fyk_A Deoxyribonucleoside 5'- 55.3 24 0.00082 27.7 5.7 67 209-276 64-142 (152)
119 3mz0_A Inositol 2-dehydrogenas 55.3 68 0.0023 28.5 9.7 72 170-245 25-98 (344)
120 2rjn_A Response regulator rece 54.9 65 0.0022 24.2 9.9 105 171-275 6-125 (154)
121 3nhm_A Response regulator; pro 54.7 58 0.002 23.6 10.4 104 173-277 5-123 (133)
122 2qip_A Protein of unknown func 54.6 35 0.0012 26.9 6.9 66 152-220 90-159 (165)
123 2rdm_A Response regulator rece 54.5 58 0.002 23.5 9.9 107 172-278 5-125 (132)
124 4ekn_B Aspartate carbamoyltran 54.3 79 0.0027 27.9 9.6 125 94-226 97-232 (306)
125 3hv2_A Response regulator/HD d 53.6 68 0.0023 24.1 10.4 105 172-276 14-133 (153)
126 1dbw_A Transcriptional regulat 53.6 59 0.002 23.3 10.2 102 172-276 3-121 (126)
127 3e3m_A Transcriptional regulat 53.4 1.2E+02 0.0041 26.8 12.0 150 213-375 126-278 (355)
128 3m6m_D Sensory/regulatory prot 53.3 67 0.0023 23.9 9.3 106 171-276 13-136 (143)
129 2zkq_b 40S ribosomal protein S 52.8 11 0.00039 33.0 3.8 93 152-245 51-149 (295)
130 3ilh_A Two component response 52.6 66 0.0023 23.6 10.2 106 172-277 9-140 (146)
131 3bbl_A Regulatory protein of L 52.4 1.1E+02 0.0037 26.0 10.8 43 333-375 172-216 (287)
132 4hkt_A Inositol 2-dehydrogenas 52.0 67 0.0023 28.3 9.1 69 170-245 25-95 (331)
133 3rot_A ABC sugar transporter, 51.9 1.1E+02 0.0038 26.0 11.1 65 213-277 61-127 (297)
134 4h3v_A Oxidoreductase domain p 51.9 38 0.0013 30.5 7.6 97 141-245 6-107 (390)
135 3cg0_A Response regulator rece 51.8 67 0.0023 23.4 9.5 106 171-276 8-128 (140)
136 2rgy_A Transcriptional regulat 51.8 90 0.0031 26.5 9.8 43 333-375 175-217 (290)
137 1k66_A Phytochrome response re 51.6 69 0.0024 23.6 9.3 104 172-275 6-137 (149)
138 3i42_A Response regulator rece 51.4 64 0.0022 23.1 8.5 105 172-276 3-122 (127)
139 3snk_A Response regulator CHEY 51.3 35 0.0012 25.1 6.2 105 172-276 14-133 (135)
140 3uug_A Multiple sugar-binding 50.8 1.1E+02 0.0038 26.4 10.4 62 212-275 58-121 (330)
141 2xzm_B RPS0E; ribosome, transl 50.4 20 0.00068 30.5 4.8 92 153-245 47-145 (241)
142 2j48_A Two-component sensor ki 50.2 45 0.0015 23.3 6.5 102 174-275 3-117 (119)
143 3d8u_A PURR transcriptional re 50.1 1.1E+02 0.0038 25.5 10.0 43 333-375 167-209 (275)
144 3kip_A 3-dehydroquinase, type 49.7 21 0.00073 28.2 4.5 60 216-275 87-157 (167)
145 3m9w_A D-xylose-binding peripl 49.1 1.3E+02 0.0044 25.8 10.5 59 213-274 58-118 (313)
146 3f6c_A Positive transcription 49.0 73 0.0025 23.0 11.3 106 173-278 2-122 (134)
147 3n8k_A 3-dehydroquinate dehydr 49.0 39 0.0013 26.8 5.9 89 187-275 62-168 (172)
148 3kto_A Response regulator rece 48.5 45 0.0015 24.5 6.4 103 172-277 6-127 (136)
149 3jvd_A Transcriptional regulat 48.5 69 0.0024 28.1 8.6 141 213-375 119-259 (333)
150 3cz5_A Two-component response 48.4 83 0.0028 23.5 9.3 104 172-277 5-126 (153)
151 3ec7_A Putative dehydrogenase; 48.4 94 0.0032 27.8 9.6 95 141-245 23-119 (357)
152 1mb3_A Cell division response 48.3 70 0.0024 22.7 9.4 103 174-276 3-121 (124)
153 3huu_A Transcription regulator 47.4 87 0.003 26.9 9.0 147 213-375 83-230 (305)
154 3kjx_A Transcriptional regulat 46.9 88 0.003 27.5 9.1 191 155-375 82-275 (344)
155 2qzj_A Two-component response 46.9 82 0.0028 23.0 9.3 105 172-276 4-121 (136)
156 8abp_A L-arabinose-binding pro 46.7 1.3E+02 0.0046 25.5 10.1 33 213-245 57-90 (306)
157 3iz6_A 40S ribosomal protein S 46.4 25 0.00086 30.8 4.9 93 152-245 55-153 (305)
158 3eod_A Protein HNR; response r 46.2 80 0.0027 22.7 8.7 107 171-277 6-127 (130)
159 3l49_A ABC sugar (ribose) tran 45.9 1.1E+02 0.0036 25.9 9.2 60 212-275 60-120 (291)
160 3ijp_A DHPR, dihydrodipicolina 45.8 28 0.00095 30.6 5.2 43 205-247 80-122 (288)
161 2jba_A Phosphate regulon trans 45.4 74 0.0025 22.7 7.1 100 174-276 4-122 (127)
162 3eul_A Possible nitrate/nitrit 45.3 93 0.0032 23.2 10.6 107 171-278 14-137 (152)
163 3h1g_A Chemotaxis protein CHEY 45.2 84 0.0029 22.6 9.7 105 172-276 5-127 (129)
164 3u5c_A 40S ribosomal protein S 45.1 20 0.0007 30.6 4.1 92 151-243 49-146 (252)
165 3f6p_A Transcriptional regulat 45.1 80 0.0028 22.4 9.5 103 174-276 4-119 (120)
166 2b4a_A BH3024; flavodoxin-like 45.0 87 0.003 22.8 9.0 106 171-276 14-131 (138)
167 3r0j_A Possible two component 44.9 1.3E+02 0.0045 24.9 10.1 104 172-275 23-140 (250)
168 3db2_A Putative NADPH-dependen 44.8 85 0.0029 28.0 8.6 91 142-245 6-98 (354)
169 3l6u_A ABC-type sugar transpor 44.3 1.4E+02 0.0049 25.1 12.4 61 213-275 64-125 (293)
170 1ml4_A Aspartate transcarbamoy 44.0 72 0.0025 28.2 7.7 125 94-227 101-236 (308)
171 3kht_A Response regulator; PSI 43.6 95 0.0032 22.8 10.2 104 172-275 5-127 (144)
172 3n53_A Response regulator rece 43.4 94 0.0032 22.7 8.8 103 173-276 4-122 (140)
173 3lwz_A 3-dehydroquinate dehydr 43.1 41 0.0014 26.2 5.2 88 187-274 41-146 (153)
174 2uyg_A 3-dehydroquinate dehydr 43.1 63 0.0022 25.1 6.2 91 185-275 31-140 (149)
175 3csu_A Protein (aspartate carb 42.9 81 0.0028 27.9 7.8 122 94-223 99-231 (310)
176 1uqr_A 3-dehydroquinate dehydr 42.3 43 0.0015 26.2 5.1 89 186-274 34-140 (154)
177 1gqo_A Dehydroquinase; dehydra 42.3 44 0.0015 25.8 5.2 90 185-274 32-139 (143)
178 3e9m_A Oxidoreductase, GFO/IDH 42.2 1.8E+02 0.0061 25.5 11.6 92 142-245 6-99 (330)
179 3h75_A Periplasmic sugar-bindi 42.0 1.2E+02 0.0039 26.7 9.1 43 333-375 191-233 (350)
180 3euw_A MYO-inositol dehydrogen 41.7 1.1E+02 0.0036 27.2 8.7 91 142-245 5-97 (344)
181 3rqi_A Response regulator prot 41.4 70 0.0024 25.1 6.8 104 172-275 7-124 (184)
182 3to5_A CHEY homolog; alpha(5)b 40.5 1.1E+02 0.0039 22.9 9.0 105 171-275 11-132 (134)
183 1jbe_A Chemotaxis protein CHEY 40.5 97 0.0033 22.0 9.8 104 172-275 4-124 (128)
184 3gd5_A Otcase, ornithine carba 40.4 1.6E+02 0.0056 26.1 9.4 117 94-222 104-234 (323)
185 4had_A Probable oxidoreductase 40.2 1.3E+02 0.0046 26.5 9.2 93 142-245 24-118 (350)
186 1tvm_A PTS system, galactitol- 40.1 46 0.0016 24.4 5.0 50 175-224 25-80 (113)
187 3moi_A Probable dehydrogenase; 40.1 97 0.0033 28.1 8.3 70 170-245 25-96 (387)
188 3u3x_A Oxidoreductase; structu 39.9 1.2E+02 0.004 27.2 8.8 93 141-245 26-120 (361)
189 3g1w_A Sugar ABC transporter; 39.6 1.8E+02 0.006 24.7 10.5 62 213-276 61-123 (305)
190 2q5c_A NTRC family transcripti 39.4 1E+02 0.0036 25.0 7.6 99 158-275 82-182 (196)
191 1p9l_A Dihydrodipicolinate red 38.8 1.8E+02 0.0061 24.6 9.4 74 174-247 2-79 (245)
192 3c97_A Signal transduction his 38.4 1.1E+02 0.0039 22.2 10.1 104 173-276 11-130 (140)
193 3cfy_A Putative LUXO repressor 38.4 1.1E+02 0.0039 22.2 10.2 102 174-275 6-121 (137)
194 4gqa_A NAD binding oxidoreduct 38.3 2.3E+02 0.0078 25.7 10.9 97 141-245 26-128 (412)
195 3bbn_B Ribosomal protein S2; s 38.1 1.5E+02 0.0052 24.8 8.4 30 215-245 159-188 (231)
196 3dfz_A SIRC, precorrin-2 dehyd 37.4 1.2E+02 0.0042 25.2 7.8 120 143-275 33-162 (223)
197 2dt5_A AT-rich DNA-binding pro 37.2 94 0.0032 25.7 7.0 126 148-276 56-202 (211)
198 2gwr_A DNA-binding response re 37.1 1.7E+02 0.0058 23.9 10.1 105 173-277 6-123 (238)
199 3gyb_A Transcriptional regulat 37.0 1.8E+02 0.0063 24.2 10.9 43 333-375 162-204 (280)
200 2ho3_A Oxidoreductase, GFO/IDH 37.0 89 0.0031 27.4 7.4 71 170-245 23-94 (325)
201 1mio_A Nitrogenase molybdenum 36.9 2.9E+02 0.0098 26.4 13.4 90 153-244 182-284 (533)
202 1jg7_A BGT, DNA beta-glucosylt 36.3 99 0.0034 25.8 6.7 125 143-277 183-317 (351)
203 2qvg_A Two component response 36.3 1.2E+02 0.0042 22.0 9.5 104 172-275 7-134 (143)
204 1eiw_A Hypothetical protein MT 36.1 44 0.0015 24.6 4.2 65 210-275 35-109 (111)
205 3ezy_A Dehydrogenase; structur 36.0 1.8E+02 0.0062 25.6 9.4 71 170-245 24-96 (344)
206 3rc1_A Sugar 3-ketoreductase; 35.9 1.4E+02 0.0047 26.6 8.5 93 141-245 27-121 (350)
207 3m0z_A Putative aldolase; MCSG 35.7 93 0.0032 26.1 6.4 85 188-274 151-248 (249)
208 1zh8_A Oxidoreductase; TM0312, 35.3 1.1E+02 0.0039 27.0 7.8 94 141-245 18-114 (340)
209 3ohs_X Trans-1,2-dihydrobenzen 35.1 1.1E+02 0.0036 27.1 7.6 69 172-245 28-98 (334)
210 3crn_A Response regulator rece 35.0 1.3E+02 0.0043 21.7 10.2 103 173-275 4-120 (132)
211 3sqd_A PAX-interacting protein 34.8 31 0.0011 28.8 3.6 63 172-245 16-79 (219)
212 3q2i_A Dehydrogenase; rossmann 34.7 1.7E+02 0.0057 26.0 8.9 93 141-245 13-107 (354)
213 1srr_A SPO0F, sporulation resp 34.5 1.2E+02 0.0041 21.4 8.8 104 173-276 4-121 (124)
214 3al2_A DNA topoisomerase 2-bin 34.5 62 0.0021 27.3 5.5 67 171-245 8-75 (235)
215 3ip3_A Oxidoreductase, putativ 34.4 1.1E+02 0.0039 26.9 7.7 73 170-245 22-99 (337)
216 1ys7_A Transcriptional regulat 34.3 1.8E+02 0.0062 23.4 10.8 105 172-276 7-125 (233)
217 3h9u_A Adenosylhomocysteinase; 34.3 96 0.0033 28.9 7.1 77 172-248 211-302 (436)
218 4ep1_A Otcase, ornithine carba 34.2 2.5E+02 0.0087 25.0 11.4 116 94-222 126-256 (340)
219 1dxh_A Ornithine carbamoyltran 34.2 2.5E+02 0.0086 25.0 11.2 119 94-222 101-233 (335)
220 1pvv_A Otcase, ornithine carba 34.1 2.4E+02 0.0084 24.8 10.8 117 94-222 102-232 (315)
221 1yio_A Response regulatory pro 34.1 1.6E+02 0.0054 23.3 8.0 101 173-276 5-122 (208)
222 2pju_A Propionate catabolism o 33.5 1.2E+02 0.0039 25.4 7.0 99 158-275 94-193 (225)
223 1dc7_A NTRC, nitrogen regulati 33.4 83 0.0028 22.2 5.6 103 174-276 5-121 (124)
224 3a10_A Response regulator; pho 33.2 1.2E+02 0.0041 21.0 9.9 101 174-274 3-115 (116)
225 4ew6_A D-galactose-1-dehydroge 33.1 51 0.0018 29.3 5.1 86 141-245 25-113 (330)
226 4fe7_A Xylose operon regulator 33.1 97 0.0033 28.2 7.2 63 213-279 76-140 (412)
227 2w37_A Ornithine carbamoyltran 33.1 2.7E+02 0.0093 25.1 11.2 118 94-222 123-254 (359)
228 2h0a_A TTHA0807, transcription 33.1 1.8E+02 0.006 24.2 8.5 43 333-375 166-208 (276)
229 3evn_A Oxidoreductase, GFO/IDH 33.1 1.3E+02 0.0043 26.5 7.7 92 142-245 6-99 (329)
230 3v5n_A Oxidoreductase; structu 33.0 2.5E+02 0.0087 25.6 10.1 73 170-245 62-142 (417)
231 3dty_A Oxidoreductase, GFO/IDH 32.9 2.4E+02 0.0081 25.5 9.8 73 171-245 38-117 (398)
232 1zgz_A Torcad operon transcrip 32.8 1.3E+02 0.0043 21.1 10.0 103 173-275 3-118 (122)
233 1kgs_A DRRD, DNA binding respo 32.7 1.9E+02 0.0065 23.1 10.1 104 173-276 3-120 (225)
234 3m6y_A 4-hydroxy-2-oxoglutarat 32.7 99 0.0034 26.2 6.2 88 187-276 173-273 (275)
235 1q0q_A 1-deoxy-D-xylulose 5-ph 32.6 2.5E+02 0.0087 25.7 9.3 87 152-244 43-132 (406)
236 2glx_A 1,5-anhydro-D-fructose 32.4 2.1E+02 0.0071 24.9 9.1 69 171-244 23-93 (332)
237 2a9o_A Response regulator; ess 32.2 1.3E+02 0.0044 21.0 9.9 103 174-276 3-118 (120)
238 2i6u_A Otcase, ornithine carba 32.2 2.6E+02 0.0089 24.5 9.4 118 94-222 95-226 (307)
239 1s2d_A Purine trans deoxyribos 32.0 40 0.0014 26.8 3.7 36 209-244 77-116 (167)
240 1p6q_A CHEY2; chemotaxis, sign 31.8 1.4E+02 0.0047 21.2 8.6 101 173-276 7-127 (129)
241 3cea_A MYO-inositol 2-dehydrog 31.8 2.4E+02 0.0083 24.7 9.5 93 141-244 8-102 (346)
242 1tlt_A Putative oxidoreductase 31.7 1.7E+02 0.0059 25.4 8.3 68 170-244 28-96 (319)
243 3gvp_A Adenosylhomocysteinase 31.7 2.2E+02 0.0074 26.5 9.0 78 171-248 219-311 (435)
244 2ayx_A Sensor kinase protein R 31.6 2.2E+02 0.0077 23.6 9.8 104 172-275 129-246 (254)
245 1i3c_A Response regulator RCP1 31.4 1.6E+02 0.0054 21.8 10.3 103 172-275 8-136 (149)
246 2pl1_A Transcriptional regulat 31.3 1.3E+02 0.0046 20.9 10.5 102 174-275 2-117 (121)
247 1p2f_A Response regulator; DRR 31.0 1.3E+02 0.0045 24.1 7.1 100 174-277 4-118 (220)
248 3pdi_A Nitrogenase MOFE cofact 30.5 3.4E+02 0.012 25.4 12.4 88 173-275 204-300 (483)
249 1gtz_A 3-dehydroquinate dehydr 30.5 67 0.0023 25.1 4.5 89 186-274 39-146 (156)
250 2dc1_A L-aspartate dehydrogena 30.3 1.4E+02 0.0047 24.8 7.1 43 205-247 41-84 (236)
251 1xhf_A DYE resistance, aerobic 30.1 1.4E+02 0.0049 20.9 10.4 103 173-275 4-119 (123)
252 3n58_A Adenosylhomocysteinase; 30.1 3E+02 0.01 25.8 9.6 42 207-248 296-338 (464)
253 2vt3_A REX, redox-sensing tran 29.6 92 0.0031 25.8 5.7 115 155-272 68-203 (215)
254 2qv0_A Protein MRKE; structura 29.4 1.6E+02 0.0056 21.3 10.3 104 172-276 9-127 (143)
255 2fep_A Catabolite control prot 29.0 2.6E+02 0.0088 23.5 14.6 44 332-375 180-223 (289)
256 3o74_A Fructose transport syst 29.0 2.4E+02 0.0083 23.2 11.0 62 213-277 58-119 (272)
257 3clk_A Transcription regulator 28.6 2.6E+02 0.0089 23.4 11.5 42 333-375 172-213 (290)
258 3q9s_A DNA-binding response re 28.5 2.5E+02 0.0086 23.2 9.5 106 172-277 37-155 (249)
259 2m1z_A LMO0427 protein; homolo 28.3 95 0.0033 22.5 4.8 77 184-275 22-104 (106)
260 3l4e_A Uncharacterized peptida 28.2 1.6E+02 0.0055 24.0 7.0 63 184-247 46-123 (206)
261 2czc_A Glyceraldehyde-3-phosph 28.2 2.7E+02 0.0092 24.6 9.0 79 159-245 17-111 (334)
262 1duv_G Octase-1, ornithine tra 27.9 3.2E+02 0.011 24.3 9.4 119 94-222 100-233 (333)
263 2o4c_A Erythronate-4-phosphate 27.7 2.4E+02 0.0082 25.6 8.6 77 171-247 115-210 (380)
264 2cok_A Poly [ADP-ribose] polym 27.7 70 0.0024 23.6 4.1 66 171-244 12-78 (113)
265 2etx_A Mediator of DNA damage 27.7 81 0.0028 25.8 5.1 62 171-245 11-72 (209)
266 1ydw_A AX110P-like protein; st 27.6 3.2E+02 0.011 24.1 11.7 92 142-244 7-102 (362)
267 3cu5_A Two component transcrip 27.5 1.8E+02 0.0062 21.2 8.8 102 174-275 4-122 (141)
268 2c4w_A 3-dehydroquinate dehydr 27.2 1.1E+02 0.0039 24.3 5.4 58 216-273 82-150 (176)
269 3e18_A Oxidoreductase; dehydro 27.0 2.6E+02 0.0088 24.9 8.8 69 170-245 27-97 (359)
270 1pno_A NAD(P) transhydrogenase 26.6 1.2E+02 0.0039 24.2 5.2 132 143-274 26-179 (180)
271 3uqz_A DNA processing protein 26.3 3.2E+02 0.011 23.7 8.7 39 228-268 232-278 (288)
272 2khz_A C-MYC-responsive protei 26.3 70 0.0024 25.2 4.2 66 209-276 73-151 (165)
273 3fwz_A Inner membrane protein 26.2 2E+02 0.0069 21.3 7.7 101 172-276 30-139 (140)
274 3tqq_A Methionyl-tRNA formyltr 26.1 2E+02 0.007 25.3 7.7 17 287-303 211-227 (314)
275 1dcf_A ETR1 protein; beta-alph 26.0 1.8E+02 0.0063 20.8 10.7 106 172-277 7-130 (136)
276 1mvo_A PHOP response regulator 25.6 1.8E+02 0.0063 20.7 10.3 106 173-278 4-123 (136)
277 1vlv_A Otcase, ornithine carba 25.6 3.5E+02 0.012 23.9 10.9 118 94-222 114-245 (325)
278 3mm4_A Histidine kinase homolo 25.5 2.5E+02 0.0087 22.3 8.5 106 172-277 61-197 (206)
279 3sho_A Transcriptional regulat 25.3 2.4E+02 0.0083 22.0 8.8 72 174-245 41-122 (187)
280 2hqr_A Putative transcriptiona 25.3 2.5E+02 0.0086 22.4 7.8 100 175-277 3-116 (223)
281 3q0i_A Methionyl-tRNA formyltr 25.1 2.1E+02 0.0072 25.2 7.5 37 186-222 54-94 (318)
282 3eqz_A Response regulator; str 24.5 1.5E+02 0.005 21.2 5.7 107 172-278 3-127 (135)
283 1f8y_A Nucleoside 2-deoxyribos 24.4 70 0.0024 25.1 3.8 37 209-245 74-114 (157)
284 3oet_A Erythronate-4-phosphate 24.3 3.4E+02 0.011 24.7 8.9 77 171-247 118-213 (381)
285 2vqe_B 30S ribosomal protein S 24.3 86 0.003 26.8 4.6 30 215-245 160-189 (256)
286 3kb6_A D-lactate dehydrogenase 24.2 2.3E+02 0.0079 25.1 7.7 75 173-247 142-233 (334)
287 2oqr_A Sensory transduction pr 23.9 2.4E+02 0.0084 22.6 7.5 105 173-277 5-122 (230)
288 1d4o_A NADP(H) transhydrogenas 23.7 99 0.0034 24.6 4.4 134 143-276 25-180 (184)
289 1l0b_A BRCA1; TANDEM-BRCT, thr 23.6 71 0.0024 26.4 4.0 66 171-244 6-75 (229)
290 3oqb_A Oxidoreductase; structu 23.5 1.5E+02 0.0052 26.6 6.6 59 183-245 55-115 (383)
291 2fvt_A Conserved hypothetical 23.4 80 0.0027 24.1 3.8 33 169-201 64-100 (135)
292 2lpm_A Two-component response 23.4 2.2E+02 0.0076 20.9 7.3 101 172-274 8-120 (123)
293 3geb_A EYES absent homolog 2; 23.1 63 0.0022 27.6 3.4 26 161-186 218-244 (274)
294 2bru_C NAD(P) transhydrogenase 23.1 1.1E+02 0.0039 24.3 4.6 129 143-273 33-185 (186)
295 1h6d_A Precursor form of gluco 23.0 1.3E+02 0.0044 27.8 6.0 96 141-244 83-181 (433)
296 2vk2_A YTFQ, ABC transporter p 22.9 3.4E+02 0.012 22.9 10.1 64 212-275 57-122 (306)
297 3o9z_A Lipopolysaccaride biosy 22.3 3.6E+02 0.012 23.3 8.6 33 213-245 72-104 (312)
298 3kcn_A Adenylate cyclase homol 22.2 2.4E+02 0.0081 20.7 9.7 104 172-276 4-123 (151)
299 3lxy_A 4-hydroxythreonine-4-ph 21.9 1.4E+02 0.0048 26.7 5.6 70 198-274 242-326 (334)
300 3gbv_A Putative LACI-family tr 21.9 3.5E+02 0.012 22.6 8.7 37 334-371 187-223 (304)
301 3l3e_A DNA topoisomerase 2-bin 21.7 2.2E+02 0.0075 20.1 7.5 67 170-244 16-83 (107)
302 3tsn_A 4-hydroxythreonine-4-ph 21.7 1.2E+02 0.0041 27.5 5.1 68 203-276 281-363 (367)
303 2dri_A D-ribose-binding protei 21.6 3.4E+02 0.012 22.4 10.1 61 214-276 58-119 (271)
304 1dih_A Dihydrodipicolinate red 21.1 80 0.0027 27.2 3.9 39 209-247 68-106 (273)
305 1fmt_A Methionyl-tRNA FMet for 21.0 4.2E+02 0.014 23.2 9.3 37 186-222 50-90 (314)
306 2fi9_A Outer membrane protein; 20.8 92 0.0032 23.4 3.7 32 170-201 66-101 (128)
307 1l7b_A DNA ligase; BRCT, autos 20.7 1.8E+02 0.0062 20.3 5.0 62 171-243 9-71 (92)
308 1vli_A Spore coat polysacchari 20.6 1.7E+02 0.0059 26.7 6.0 61 182-245 101-166 (385)
309 4dgs_A Dehydrogenase; structur 20.4 3.3E+02 0.011 24.2 7.9 76 172-247 171-261 (340)
310 3oa2_A WBPB; oxidoreductase, s 20.4 4.2E+02 0.014 22.9 8.9 33 213-245 73-105 (318)
311 1yxo_A 4-hydroxythreonine-4-ph 20.3 2.3E+02 0.0078 25.2 6.7 114 154-274 178-321 (328)
312 2ioy_A Periplasmic sugar-bindi 20.2 3.8E+02 0.013 22.3 10.1 62 213-276 57-119 (283)
313 1xea_A Oxidoreductase, GFO/IDH 20.2 2.6E+02 0.0087 24.3 7.2 70 170-244 25-94 (323)
314 3h5t_A Transcriptional regulat 20.2 2.5E+02 0.0085 24.7 7.3 47 230-279 144-190 (366)
315 1m3s_A Hypothetical protein YC 20.2 2.5E+02 0.0084 21.9 6.5 70 174-245 39-114 (186)
316 1f06_A MESO-diaminopimelate D- 20.2 1.2E+02 0.0042 26.7 5.0 39 208-246 53-91 (320)
317 1djl_A Transhydrogenase DIII; 20.0 1E+02 0.0035 25.1 3.8 134 143-276 48-203 (207)
318 2r25_B Osmosensing histidine p 20.0 2.5E+02 0.0085 20.1 9.9 104 173-276 3-127 (133)
No 1
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=100.00 E-value=3.7e-34 Score=272.18 Aligned_cols=276 Identities=14% Similarity=0.120 Sum_probs=212.6
Q ss_pred ccccccCCCCCCcEEEEcCCcchhhhhccccccccc-C-cEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcce
Q 016975 19 GDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKF-R-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHK 96 (379)
Q Consensus 19 ~~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~-~-~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 96 (379)
..+.+++.+.+||+||++.+....+.. .+.++. . ++|..+|+....+.. .. .......... ..+|.
T Consensus 76 ~~l~~~~~~~~~Dvv~~~~~~~~~~~~---~~~~~~~~~~~i~~~h~~~~~~~~---~~----~~~~~~~~~~--~~~d~ 143 (394)
T 3okp_A 76 HAMAEIIREREIDNVWFGAAAPLALMA---GTAKQAGASKVIASTHGHEVGWSM---LP----GSRQSLRKIG--TEVDV 143 (394)
T ss_dssp HHHHHHHHHTTCSEEEESSCTTGGGGH---HHHHHTTCSEEEEECCSTHHHHTT---SH----HHHHHHHHHH--HHCSE
T ss_pred HHHHHHHHhcCCCEEEECCcchHHHHH---HHHHhcCCCcEEEEeccchhhhhh---cc----hhhHHHHHHH--HhCCE
Confidence 356777788899999998876655442 122222 3 488899987653321 11 1112222222 22599
Q ss_pred EEEcChhhhhhhhc------cceee-cccCCCCccCcc-c--cHHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHh
Q 016975 97 VIRLSAATQEYANS------IICNV-HGVNPKFLEIGK-K--KKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDH 166 (379)
Q Consensus 97 vi~~S~~~~~~~~~------~i~~i-~gvd~~~~~~~~-~--~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l 166 (379)
++++|+..++...+ ++.++ ||+|.+.|.+.. . ...+...+..++++.++|+|++.+.||++.+++++..+
T Consensus 144 ii~~s~~~~~~~~~~~~~~~~~~vi~ngv~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l 223 (394)
T 3okp_A 144 LTYISQYTLRRFKSAFGSHPTFEHLPSGVDVKRFTPATPEDKSATRKKLGFTDTTPVIACNSRLVPRKGQDSLIKAMPQV 223 (394)
T ss_dssp EEESCHHHHHHHHHHHCSSSEEEECCCCBCTTTSCCCCHHHHHHHHHHTTCCTTCCEEEEESCSCGGGCHHHHHHHHHHH
T ss_pred EEEcCHHHHHHHHHhcCCCCCeEEecCCcCHHHcCCCCchhhHHHHHhcCCCcCceEEEEEeccccccCHHHHHHHHHHH
Confidence 99999887755432 34444 899998886622 2 22223344455568999999999999999999999999
Q ss_pred HhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHH--HHHhhcCEEEecCCC-------CcchhHHHHHHHcC
Q 016975 167 QKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPSTT-------DVVCTTTAEALAMG 237 (379)
Q Consensus 167 ~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~--~~~~~~dv~v~ps~~-------E~~~~~~~EAma~G 237 (379)
.++.++++|+|+|+|+..+.+++.+..+..++.|+|.+++.+ ++|+.||++|+||.. |++|++++|||+||
T Consensus 224 ~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~v~ps~~~~~~~~~e~~~~~~~Ea~a~G 303 (394)
T 3okp_A 224 IAARPDAQLLIVGSGRYESTLRRLATDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLDVEGLGIVYLEAQACG 303 (394)
T ss_dssp HHHSTTCEEEEECCCTTHHHHHHHTGGGGGGEEEEESCCHHHHHHHHHHCSEEEECCCCBGGGTBCCSSCHHHHHHHHTT
T ss_pred HhhCCCeEEEEEcCchHHHHHHHHHhcccCeEEEcCCCCHHHHHHHHHhCCEEEecCccccccccccccCcHHHHHHHcC
Confidence 988899999999999999999988865556899999998777 999999999999999 99999999999999
Q ss_pred CeEEecCCCc-ccccccCCCEEEeC--CHHHHHHHHHHHHhCCCC--CCcHHHH----hcCCHHHHHHHHHHHHhcccc
Q 016975 238 KIVVCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQR----HQLSWESATERFLQVAELDQA 307 (379)
Q Consensus 238 ~PVI~t~~g~-~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~~~----~~~sw~~~~~~~~~~~~~~~~ 307 (379)
+|||+|+.|+ .|++.++ +|++++ |+++++++|.++++++.. .++++++ ++|+|+.+++++.++|+....
T Consensus 304 ~PvI~~~~~~~~e~i~~~-~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~r 381 (394)
T 3okp_A 304 VPVIAGTSGGAPETVTPA-TGLVVEGSDVDKLSELLIELLDDPIRRAAMGAAGRAHVEAEWSWEIMGERLTNILQSEPR 381 (394)
T ss_dssp CCEEECSSTTGGGGCCTT-TEEECCTTCHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHSCCC
T ss_pred CCEEEeCCCChHHHHhcC-CceEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 9999999955 8888888 999998 999999999999997654 4444332 679999999999999997553
No 2
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=100.00 E-value=1.1e-33 Score=269.60 Aligned_cols=278 Identities=15% Similarity=0.112 Sum_probs=206.7
Q ss_pred cccccCCCCCCcEEEEcCCcchhhhhc-ccccccccCcEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEE
Q 016975 20 DISEVIPDEVADIAVLEEPEHLTWFHH-GKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVI 98 (379)
Q Consensus 20 ~l~~~l~~~~~DvV~~~~p~~~~~~~~-~~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 98 (379)
.+.+++.+.+||+||++.+....+... .........|+|.++|+....... ...... ......+ ..+|.++
T Consensus 90 ~l~~~l~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~--~~~~~~----~~~~~~~--~~ad~ii 161 (394)
T 2jjm_A 90 KMAEVAQRENLDILHVHYAIPHAICAYLAKQMIGERIKIVTTLHGTDITVLG--SDPSLN----NLIRFGI--EQSDVVT 161 (394)
T ss_dssp HHHHHHHHHTCSEEEECSSTTHHHHHHHHHHHTTTCSEEEEECCHHHHHTTT--TCTTTH----HHHHHHH--HHSSEEE
T ss_pred HHHHHHHHcCCCEEEEcchhHHHHHHHHHHHhhcCCCCEEEEEecCcccccC--CCHHHH----HHHHHHH--hhCCEEE
Confidence 355666778999999987553322210 111111124899999985432211 111111 1112211 1269999
Q ss_pred EcChhhhhhhh------ccceee-cccCCCCccCccccHHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhhcC
Q 016975 99 RLSAATQEYAN------SIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELA 171 (379)
Q Consensus 99 ~~S~~~~~~~~------~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~ 171 (379)
++|+..++... .++.++ ||+|++.|.+......+...+..++++.++|+|++.+.||++.+++++..+.++ +
T Consensus 162 ~~s~~~~~~~~~~~~~~~~~~vi~ngv~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~-~ 240 (394)
T 2jjm_A 162 AVSHSLINETHELVKPNKDIQTVYNFIDERVYFKRDMTQLKKEYGISESEKILIHISNFRKVKRVQDVVQAFAKIVTE-V 240 (394)
T ss_dssp ESCHHHHHHHHHHTCCSSCEEECCCCCCTTTCCCCCCHHHHHHTTCC---CEEEEECCCCGGGTHHHHHHHHHHHHHS-S
T ss_pred ECCHHHHHHHHHhhCCcccEEEecCCccHHhcCCcchHHHHHHcCCCCCCeEEEEeeccccccCHHHHHHHHHHHHhh-C
Confidence 99988775442 244444 899998887654433333444435577999999999999999999999999876 6
Q ss_pred CcEEEEEcCCcChHHHHHHHHhcCC--eeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc-c
Q 016975 172 GLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-N 248 (379)
Q Consensus 172 ~~~l~i~G~g~~~~~l~~~~~~~~l--~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-~ 248 (379)
+++|+|+|+|++.+++++.++++++ ++.|.|..++..++|+.||++|+||..|++|++++|||+||+|||+|+.|+ .
T Consensus 241 ~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~~EAma~G~PvI~~~~~~~~ 320 (394)
T 2jjm_A 241 DAKLLLVGDGPEFCTILQLVKNLHIEDRVLFLGKQDNVAELLAMSDLMLLLSEKESFGLVLLEAMACGVPCIGTRVGGIP 320 (394)
T ss_dssp CCEEEEECCCTTHHHHHHHHHTTTCGGGBCCCBSCSCTHHHHHTCSEEEECCSCCSCCHHHHHHHHTTCCEEEECCTTST
T ss_pred CCEEEEECCchHHHHHHHHHHHcCCCCeEEEeCchhhHHHHHHhCCEEEeccccCCCchHHHHHHhcCCCEEEecCCChH
Confidence 7999999999999999999998876 688889765555999999999999999999999999999999999999955 8
Q ss_pred cccccCCCEEEeC--CHHHHHHHHHHHHhCCCC--CCcHHHH----hcCCHHHHHHHHHHHHhccc
Q 016975 249 DFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQR----HQLSWESATERFLQVAELDQ 306 (379)
Q Consensus 249 e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~~~----~~~sw~~~~~~~~~~~~~~~ 306 (379)
|++.++.+|++++ |+++++++|.++++++.. .++++++ +.|+|+.+++++.++|+...
T Consensus 321 e~v~~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 386 (394)
T 2jjm_A 321 EVIQHGDTGYLCEVGDTTGVADQAIQLLKDEELHRNMGERARESVYEQFRSEKIVSQYETIYYDVL 386 (394)
T ss_dssp TTCCBTTTEEEECTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTC
T ss_pred HHhhcCCceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 9999999999998 999999999999997654 4444332 78999999999999999654
No 3
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=100.00 E-value=1.6e-33 Score=270.42 Aligned_cols=269 Identities=14% Similarity=0.084 Sum_probs=203.0
Q ss_pred ccccCCCCCCcEEEEcCCcchhhhhcccccccccCcEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEE-E
Q 016975 21 ISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVI-R 99 (379)
Q Consensus 21 l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi-~ 99 (379)
+.+++.+.+||+||++.+....+.. +..+..|+|..+|+.+.... ....+.+.+++.+ +|.++ +
T Consensus 118 ~~~~l~~~~~Dvv~~~~~~~~~~~~----~~~~~~p~v~~~h~~~~~~~---------~~~~~~~~~~~~~--~~~~i~~ 182 (416)
T 2x6q_A 118 NSKFIDLSSFDYVLVHDPQPAALIE----FYEKKSPWLWRCHIDLSSPN---------REFWEFLRRFVEK--YDRYIFH 182 (416)
T ss_dssp HHHSSCGGGSSEEEEESSTTGGGGG----GSCCCSCEEEECCSCCSSCC---------HHHHHHHHHHHTT--SSEEEES
T ss_pred HHHHHhhcCCCEEEEeccchhhHHH----HHHhcCCEEEEEccccCCcc---------HHHHHHHHHHHHh--CCEEEEe
Confidence 4566777899999999876554432 22222699999998653211 1222333333222 36655 6
Q ss_pred cChhhhhhhh-ccceee-cccCCCCccCccc-----cHHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhhcCC
Q 016975 100 LSAATQEYAN-SIICNV-HGVNPKFLEIGKK-----KKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAG 172 (379)
Q Consensus 100 ~S~~~~~~~~-~~i~~i-~gvd~~~~~~~~~-----~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~ 172 (379)
+|+..++... .++.++ ||+|+..+.+... ...+...+..++++.++|+||+.+.||++.+++++..+.++.|+
T Consensus 183 ~s~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~ 262 (416)
T 2x6q_A 183 LPEYVQPELDRNKAVIMPPSIDPLSEKNVELKQTEILRILERFDVDPEKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPG 262 (416)
T ss_dssp SGGGSCTTSCTTTEEECCCCBCTTSTTTSCCCHHHHHHHHHHTTCCTTSCEEEEECCCCTTSCHHHHHHHHHHHHHHCTT
T ss_pred chHHHHhhCCccceEEeCCCCChhhhcccccChhhHHHHHHHhCCCCCCcEEEEEeccccccCHHHHHHHHHHHHHhCCC
Confidence 7777665433 555555 8999866643221 11223334455678999999999999999999999999988899
Q ss_pred cEEEEEcCCcC-----hHHHHHHHHhcCC--eeEEecCCC---CHH--HHHhhcCEEEecCCCCcchhHHHHHHHcCCeE
Q 016975 173 LEVDLYGNGED-----FNQIQEAAEKLKI--VVRVYPGRD---HAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIV 240 (379)
Q Consensus 173 ~~l~i~G~g~~-----~~~l~~~~~~~~l--~v~~~g~~~---~~~--~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PV 240 (379)
++|+|+|+|+. .+.++++++++++ ++.|+|.++ +.+ ++|+.||++|+||..|+||++++||||||+||
T Consensus 263 ~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~~~~~~~~ad~~v~ps~~E~~~~~~lEAma~G~Pv 342 (416)
T 2x6q_A 263 VQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRASDVILQMSIREGFGLTVTEAMWKGKPV 342 (416)
T ss_dssp CEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHHHHHHHHCSEEEECCSSCSSCHHHHHHHHTTCCE
T ss_pred eEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHHHHHHHHHhCCEEEECCCcCCCccHHHHHHHcCCCE
Confidence 99999999975 4567778777765 789999664 344 99999999999999999999999999999999
Q ss_pred EecCCCc-ccccccCCCEEEeCCHHHHHHHHHHHHhCCCC--CCcHHHH----hcCCHHHHHHHHHHHHhc
Q 016975 241 VCANHPS-NDFFKQFPNCRTYDDRNGFVEATLKALAEEPA--LPTEAQR----HQLSWESATERFLQVAEL 304 (379)
Q Consensus 241 I~t~~g~-~e~i~~~~~g~~~~~~~~l~~~i~~~l~~~~~--~~~~~~~----~~~sw~~~~~~~~~~~~~ 304 (379)
|+|+.|+ .|++.++.+|++++|+++++++|.++++++.. .++++++ ++|+|+.+++++.++|+.
T Consensus 343 I~~~~~g~~e~i~~~~~g~l~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 413 (416)
T 2x6q_A 343 IGRAVGGIKFQIVDGETGFLVRDANEAVEVVLYLLKHPEVSKEMGAKAKERVRKNFIITKHMERYLDILNS 413 (416)
T ss_dssp EEESCHHHHHHCCBTTTEEEESSHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHT
T ss_pred EEccCCCChhheecCCCeEEECCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 9999955 89999999999999999999999999997654 4444333 589999999999999984
No 4
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=100.00 E-value=5.1e-33 Score=267.90 Aligned_cols=273 Identities=16% Similarity=0.137 Sum_probs=199.9
Q ss_pred CCCCcEEEEcCCcchhhhhccccccccc-CcEEEEeccChHH----HH-HHhhcchHHHHHH-HHHHHHHHHHhcceEEE
Q 016975 27 DEVADIAVLEEPEHLTWFHHGKRWKTKF-RYVVGIVHTNYLE----YV-KREKNGRLQAFLL-KYANSWLVDIYCHKVIR 99 (379)
Q Consensus 27 ~~~~DvV~~~~p~~~~~~~~~~~~~~~~-~~vv~~~h~~~~~----~~-~~~~~~~~~~~~~-~~~~~~~~~~~~d~vi~ 99 (379)
..+||+||++.+....... ...+.. .|+|.++|+.+.. .. ............. ......+ ..+|.+++
T Consensus 120 ~~~~Dii~~~~~~~~~~~~---~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ad~ii~ 194 (439)
T 3fro_A 120 EPLPDVVHFHDWHTVFAGA---LIKKYFKIPAVFTIHRLNKSKLPAFYFHEAGLSELAPYPDIDPEHTGG--YIADIVTT 194 (439)
T ss_dssp SCCCSEEEEESGGGHHHHH---HHHHHHCCCEEEEESCCCCCCEEHHHHHHTTCGGGCCSSEECHHHHHH--HHCSEEEE
T ss_pred CCCCeEEEecchhhhhhHH---HHhhccCCCEEEEecccccccCchHHhCccccccccccceeeHhhhhh--hhccEEEe
Confidence 6699999999754322121 122222 3999999987522 11 0000000000000 1111111 12699999
Q ss_pred cChhhhhh-------hhccceee-cccCCCCccCcc--------ccHHHhhcCCCCCcceEEEEEecc-cccCHHHHHHH
Q 016975 100 LSAATQEY-------ANSIICNV-HGVNPKFLEIGK--------KKKEQQQNGTHAFAKGAYYIGKMV-WSKGYKELLEL 162 (379)
Q Consensus 100 ~S~~~~~~-------~~~~i~~i-~gvd~~~~~~~~--------~~~~~~~~~~~~~~~~il~vgrl~-~~Kg~~~li~a 162 (379)
+|+...+. ...++.++ ||+|.+.|.+.. ....+...+..++ +.++|+|++. +.||++.++++
T Consensus 195 ~S~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~G~~~~~~Kg~~~li~a 273 (439)
T 3fro_A 195 VSRGYLIDEWGFFRNFEGKITYVFNGIDCSFWNESYLTGSRDERKKSLLSKFGMDEG-VTFMFIGRFDRGQKGVDVLLKA 273 (439)
T ss_dssp SCHHHHHHTHHHHGGGTTSEEECCCCCCTTTSCGGGSCSCHHHHHHHHHHHHTCCSC-EEEEEECCSSCTTBCHHHHHHH
T ss_pred cCHHHHHHHhhhhhhcCCceeecCCCCCchhcCcccccchhhhhHHHHHHHcCCCCC-cEEEEEcccccccccHHHHHHH
Confidence 99876543 23455555 899999887652 1122233333444 8999999999 99999999999
Q ss_pred HHHhHhhc--CCcEEEEEcCCcCh--HHHHHHHHhcCCeeEEecCCCCHH--HHHhhcCEEEecCCCCcchhHHHHHHHc
Q 016975 163 LDDHQKEL--AGLEVDLYGNGEDF--NQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAM 236 (379)
Q Consensus 163 ~~~l~~~~--~~~~l~i~G~g~~~--~~l~~~~~~~~l~v~~~g~~~~~~--~~~~~~dv~v~ps~~E~~~~~~~EAma~ 236 (379)
+..+.++. ++++|+|+|+|+.. +.+++++++++..+.+.|.+++++ ++|+.||++|+||..|+||++++|||||
T Consensus 274 ~~~l~~~~~~~~~~l~i~G~g~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~EAma~ 353 (439)
T 3fro_A 274 IEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCL 353 (439)
T ss_dssp HHHHHTSGGGGGEEEEEECCCCHHHHHHHHHHHHHCTTEEEECSCCCHHHHHHHHTTCSEEEECBSCCSSCHHHHHHHHT
T ss_pred HHHHHhcccCCCeEEEEEcCCChhHHHHHHHHHhhcCCEEEEcCCCCHHHHHHHHHHCCEEEeCCCCCCccHHHHHHHHC
Confidence 99998876 89999999999986 889999999884444567788887 9999999999999999999999999999
Q ss_pred CCeEEecCCCc-ccccccCCCEEEeC--CHHHHHHHHHHHHh-CCCC--CCcHHHH---hcCCHHHHHHHHHHHHhccc
Q 016975 237 GKIVVCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALA-EEPA--LPTEAQR---HQLSWESATERFLQVAELDQ 306 (379)
Q Consensus 237 G~PVI~t~~g~-~e~i~~~~~g~~~~--~~~~l~~~i~~~l~-~~~~--~~~~~~~---~~~sw~~~~~~~~~~~~~~~ 306 (379)
|+|||+|+.|+ .|++.++ +|++++ |+++++++|.++++ ++.. .++++++ ++|+|+.+++++.++|+...
T Consensus 354 G~Pvi~s~~~~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 431 (439)
T 3fro_A 354 GAIPIASAVGGLRDIITNE-TGILVKAGDPGELANAILKALELSRSDLSKFRENCKKRAMSFSWEKSAERYVKAYTGSI 431 (439)
T ss_dssp TCEEEEESSTHHHHHCCTT-TCEEECTTCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHTCS
T ss_pred CCCeEEcCCCCcceeEEcC-ceEEeCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHH
Confidence 99999999976 7788776 898888 99999999999999 6655 4444333 68999999999999999754
No 5
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=100.00 E-value=1.6e-32 Score=264.95 Aligned_cols=277 Identities=13% Similarity=0.104 Sum_probs=200.3
Q ss_pred CCcEEEEcCCcchhhhhccccccccc-CcEEEEeccChHHHHHHhhc-chHHHHHHHHHHHHHHHHhcceEEEcChhhhh
Q 016975 29 VADIAVLEEPEHLTWFHHGKRWKTKF-RYVVGIVHTNYLEYVKREKN-GRLQAFLLKYANSWLVDIYCHKVIRLSAATQE 106 (379)
Q Consensus 29 ~~DvV~~~~p~~~~~~~~~~~~~~~~-~~vv~~~h~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~ 106 (379)
+||+||++.... .+. +....+.. .|+|.++|+........... ..........+.++ ....+|.++++|+..++
T Consensus 122 ~~Div~~~~~~~-~~~--~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~ii~~s~~~~~ 197 (438)
T 3c48_A 122 TYDLIHSHYWLS-GQV--GWLLRDLWRIPLIHTAHTLAAVKNSYRDDSDTPESEARRICEQQ-LVDNADVLAVNTQEEMQ 197 (438)
T ss_dssp CCSEEEEEHHHH-HHH--HHHHHHHHTCCEEEECSSCHHHHSCC----CCHHHHHHHHHHHH-HHHHCSEEEESSHHHHH
T ss_pred CCCEEEeCCccH-HHH--HHHHHHHcCCCEEEEecCCcccccccccccCCcchHHHHHHHHH-HHhcCCEEEEcCHHHHH
Confidence 499999986321 111 11122222 39999999876432110000 00111112222222 11237999999988665
Q ss_pred hhh-------ccceee-cccCCCCccCccccH---HHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhhcC--Cc
Q 016975 107 YAN-------SIICNV-HGVNPKFLEIGKKKK---EQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELA--GL 173 (379)
Q Consensus 107 ~~~-------~~i~~i-~gvd~~~~~~~~~~~---~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~--~~ 173 (379)
... .++.++ ||+|.+.|.+..... .+...+..++++.++|+|++.+.||++.+++++..+.++.| ++
T Consensus 198 ~~~~~~g~~~~k~~vi~ngvd~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~p~~~~ 277 (438)
T 3c48_A 198 DLMHHYDADPDRISVVSPGADVELYSPGNDRATERSRRELGIPLHTKVVAFVGRLQPFKGPQVLIKAVAALFDRDPDRNL 277 (438)
T ss_dssp HHHHHHCCCGGGEEECCCCCCTTTSCCC----CHHHHHHTTCCSSSEEEEEESCBSGGGCHHHHHHHHHHHHHHCTTCSE
T ss_pred HHHHHhCCChhheEEecCCccccccCCcccchhhhhHHhcCCCCCCcEEEEEeeecccCCHHHHHHHHHHHHhhCCCcce
Confidence 432 234445 899988886643322 23344444567899999999999999999999999998876 89
Q ss_pred EEEEEcC----CcChHHHHHHHHhcCC--eeEEecCCCCHH--HHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 174 EVDLYGN----GEDFNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 174 ~l~i~G~----g~~~~~l~~~~~~~~l--~v~~~g~~~~~~--~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
+|+|+|+ |+..+.+++.++++++ ++.|+|.+++.+ ++|+.||++|+||..|+||++++|||+||+|||+++.
T Consensus 278 ~l~i~G~~~~~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~ 357 (438)
T 3c48_A 278 RVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAADIVAVPSFNESFGLVAMEAQASGTPVIAARV 357 (438)
T ss_dssp EEEEECCBC------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHHHCSEEEECCSCCSSCHHHHHHHHTTCCEEEESC
T ss_pred EEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEcCCCChHHHHHHHHhCCEEEECccccCCchHHHHHHHcCCCEEecCC
Confidence 9999998 8888899999998876 789999998777 9999999999999999999999999999999999999
Q ss_pred Cc-ccccccCCCEEEeC--CHHHHHHHHHHHHhCCCC--CCcHHHH---hcCCHHHHHHHHHHHHhcccccc
Q 016975 246 PS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQR---HQLSWESATERFLQVAELDQAVV 309 (379)
Q Consensus 246 g~-~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~~~---~~~sw~~~~~~~~~~~~~~~~~~ 309 (379)
|+ .|++.++.+|++++ |+++++++|.++++++.. .++++++ ..|+|+.+++++.++|+......
T Consensus 358 ~~~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 429 (438)
T 3c48_A 358 GGLPIAVAEGETGLLVDGHSPHAWADALATLLDDDETRIRMGEDAVEHARTFSWAATAAQLSSLYNDAIANE 429 (438)
T ss_dssp TTHHHHSCBTTTEEEESSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CChhHHhhCCCcEEECCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhc
Confidence 65 88999999999988 999999999999997654 4444333 34999999999999999765443
No 6
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=100.00 E-value=5.5e-32 Score=275.65 Aligned_cols=276 Identities=10% Similarity=0.093 Sum_probs=198.1
Q ss_pred CCCCcEEEEcCCcchhhhhcccccccccC-cEEEEeccChHHHHHHhhcc--hHHHHH---HHHHHHHHHHHhcceEEEc
Q 016975 27 DEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNG--RLQAFL---LKYANSWLVDIYCHKVIRL 100 (379)
Q Consensus 27 ~~~~DvV~~~~p~~~~~~~~~~~~~~~~~-~vv~~~h~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~d~vi~~ 100 (379)
..+|||||+|... .++. +....+.+. |+|.+.|+............ .....+ .+..........||.||++
T Consensus 405 ~~~PDVIHsH~~~-sglv--a~llar~~gvP~V~T~Hsl~~~k~~~~~~~~~~~~~~y~~~~r~~aE~~~l~~AD~VIa~ 481 (816)
T 3s28_A 405 NGKPDLIIGNYSD-GNLV--ASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIFAMNHTDFIITS 481 (816)
T ss_dssp SSCCSEEEEEHHH-HHHH--HHHHHHHHTCCEEEECSCCHHHHSTTTTTTHHHHHHHHCHHHHHHHHHHHHHHSSEEEES
T ss_pred CCCCeEEEeCCch-HHHH--HHHHHHHcCCCEEEEEecccccccccccchhhhHHHHHHHHHHHHHHHHHHHhCCEEEEC
Confidence 3479999998532 1222 223344444 99999998653322100000 000000 0110011122337999999
Q ss_pred Chhhhh--------hhh--------------------ccceee-cccCCCCccCccccHH-------------------H
Q 016975 101 SAATQE--------YAN--------------------SIICNV-HGVNPKFLEIGKKKKE-------------------Q 132 (379)
Q Consensus 101 S~~~~~--------~~~--------------------~~i~~i-~gvd~~~~~~~~~~~~-------------------~ 132 (379)
|....+ +.. .++.++ ||+|.+.|.+...... +
T Consensus 482 S~~~~~~l~~~~~~y~~~~~~~~p~Lyr~~~gI~~~~~ki~VIpnGVD~~~F~P~~~~~~Rl~~~~~~i~~~l~~p~~~r 561 (816)
T 3s28_A 482 TFQEIAGSKETVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLTKFHSEIEELLYSDVENK 561 (816)
T ss_dssp CHHHHHCCSSSCCTTGGGSSEEETTTEEEEESCCTTCTTEEECCCCCCTTTSCCTTCTTTCCGGGHHHHHHHHHCSCCBT
T ss_pred CHHHHHHHHHHHHHhhhhhccccchhhhcccccccCCCCEEEECCCcCHHHcCccchhhhhhhhccccccccccchhhHH
Confidence 977554 211 045555 8999998876543221 0
Q ss_pred hhcCC--CCCcceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCc-----------ChHHHHHHHHhcCC--e
Q 016975 133 QQNGT--HAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGE-----------DFNQIQEAAEKLKI--V 197 (379)
Q Consensus 133 ~~~~~--~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~-----------~~~~l~~~~~~~~l--~ 197 (379)
...+. .+++++|+|+||+.+.||++.+++|+..+.+..++++|+|+|+|+ ..+.+++.++++++ +
T Consensus 562 ~~lg~l~~~~~~vIl~vGRl~~~KGid~LIeA~~~L~~~~~~v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL~~~ 641 (816)
T 3s28_A 562 EHLCVLKDKKKPILFTMARLDRVKNLSGLVEWYGKNTRLRELANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNGQ 641 (816)
T ss_dssp TEESCBSCTTSCEEEEECCCCTTTTHHHHHHHHHHCHHHHHHCEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTCBBB
T ss_pred HHhcccCCCCCeEEEEEccCcccCCHHHHHHHHHHHHhhCCCeEEEEEeCCCcccccchhhHHHHHHHHHHHHHcCCCCc
Confidence 11111 456789999999999999999999999998878899999999998 45778888888887 7
Q ss_pred eEEecCCCC----HH--HHHh-hcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc-ccccccCCCEEEeC--CHHHHH
Q 016975 198 VRVYPGRDH----AD--LIFH-DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--DRNGFV 267 (379)
Q Consensus 198 v~~~g~~~~----~~--~~~~-~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-~e~i~~~~~g~~~~--~~~~l~ 267 (379)
+.|+|.+++ .+ .+|. .+|+||+||..|+||++++||||||+|||+|+.|+ .|++.++.+|++++ |+++++
T Consensus 642 V~flG~~~~~v~~~eL~~~~~~aaDvfV~PS~~EgfglvllEAMA~G~PVIasd~GG~~EiV~dg~~Gllv~p~D~e~LA 721 (816)
T 3s28_A 642 FRWISSQMDRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQAA 721 (816)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTCEEEECCSCBSSCHHHHHHHHTTCCEEEESSBTHHHHCCBTTTBEEECTTSHHHHH
T ss_pred EEEccCccccCCHHHHHHHHHhcCeEEEECCCccCccHHHHHHHHcCCCEEEeCCCChHHHHccCCcEEEeCCCCHHHHH
Confidence 888897765 33 6666 57999999999999999999999999999999965 89999999999998 999999
Q ss_pred HHHHHHH----hCCCC--CCcHHHH----hcCCHHHHHHHHHHHHhcc
Q 016975 268 EATLKAL----AEEPA--LPTEAQR----HQLSWESATERFLQVAELD 305 (379)
Q Consensus 268 ~~i~~~l----~~~~~--~~~~~~~----~~~sw~~~~~~~~~~~~~~ 305 (379)
++|.+++ .++.. .++++++ ++|||+.++++++++|+..
T Consensus 722 ~aI~~lL~~Ll~d~~~~~~m~~~ar~~a~~~fSwe~~a~~ll~lY~~~ 769 (816)
T 3s28_A 722 DTLADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLLTLTGVY 769 (816)
T ss_dssp HHHHHHHHHHHHCTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 9997776 66654 4555433 7899999999999999954
No 7
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=99.98 E-value=1.9e-32 Score=269.27 Aligned_cols=283 Identities=13% Similarity=0.079 Sum_probs=204.2
Q ss_pred ccccCCC--CCCcEEEEcCCcchhhhhcccccccccC-cEEEEeccChHHHHHHhhc-----chHHHH----HHHHHHHH
Q 016975 21 ISEVIPD--EVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKN-----GRLQAF----LLKYANSW 88 (379)
Q Consensus 21 l~~~l~~--~~~DvV~~~~p~~~~~~~~~~~~~~~~~-~vv~~~h~~~~~~~~~~~~-----~~~~~~----~~~~~~~~ 88 (379)
+.+++.+ .+|||||++.+. ..+. +..+.+..+ |+|.++|+........... +..... ....+.++
T Consensus 110 l~~~l~~~~~~~Divh~~~~~-~~~~--~~~~~~~~~~p~v~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (499)
T 2r60_A 110 IINFYREEGKFPQVVTTHYGD-GGLA--GVLLKNIKGLPFTFTGHSLGAQKMEKLNVNTSNFKEMDERFKFHRRIIAERL 186 (499)
T ss_dssp HHHHHHHHTCCCSEEEEEHHH-HHHH--HHHHHHHHCCCEEEECSSCHHHHHHTTCCCSTTSHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCEEEEcCCc-chHH--HHHHHHhcCCcEEEEccCcccccchhhccCCCCcchhhhhHHHHHHHHHHHH
Confidence 4445555 589999998643 2222 112222223 9999999976544321100 001111 11111122
Q ss_pred HHHHhcceEEEcChhhhhhhh--------------ccceee-cccCCCCccCccc----cHHHhhcC-----CCCCcceE
Q 016975 89 LVDIYCHKVIRLSAATQEYAN--------------SIICNV-HGVNPKFLEIGKK----KKEQQQNG-----THAFAKGA 144 (379)
Q Consensus 89 ~~~~~~d~vi~~S~~~~~~~~--------------~~i~~i-~gvd~~~~~~~~~----~~~~~~~~-----~~~~~~~i 144 (379)
....+|.++++|+..++... .++.++ ||+|.+.|.+... ...+...+ ..++++.|
T Consensus 187 -~~~~ad~vi~~S~~~~~~~~~~~~~g~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~i 265 (499)
T 2r60_A 187 -TMSYADKIIVSTSQERFGQYSHDLYRGAVNVEDDDKFSVIPPGVNTRVFDGEYGDKIKAKITKYLERDLGSERMELPAI 265 (499)
T ss_dssp -HHHHCSEEEESSHHHHHHTTTSGGGTTTCCTTCGGGEEECCCCBCTTTSSSCCCHHHHHHHHHHHHHHSCGGGTTSCEE
T ss_pred -HHhcCCEEEECCHHHHHHHHhhhcccccccccCCCCeEEECCCcChhhcCccchhhhHHHHHHHhcccccccCCCCcEE
Confidence 12237999999988665321 234444 8999988876533 11222222 23456789
Q ss_pred EEEEecccccCHHHHHHHHHHhHhhcCC-cEEEEEcC--Cc----------C---hHHHHHHHHhcCC--eeEEecCCCC
Q 016975 145 YYIGKMVWSKGYKELLELLDDHQKELAG-LEVDLYGN--GE----------D---FNQIQEAAEKLKI--VVRVYPGRDH 206 (379)
Q Consensus 145 l~vgrl~~~Kg~~~li~a~~~l~~~~~~-~~l~i~G~--g~----------~---~~~l~~~~~~~~l--~v~~~g~~~~ 206 (379)
+|+||+.+.||++.+++|+..+.+..++ ++++|+|+ |+ + .+++++.++++++ ++.|+|.+++
T Consensus 266 ~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~~G~v~~ 345 (499)
T 2r60_A 266 IASSRLDQKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFPLNSQ 345 (499)
T ss_dssp EECSCCCGGGCHHHHHHHHHTCHHHHHHCEEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEEEECCSH
T ss_pred EEeecCccccCHHHHHHHHHHHHHhCCCceEEEEECCCCCcccccccccccchHHHHHHHHHHHhcCCCceEEECCCCCH
Confidence 9999999999999999999999876554 58999998 43 1 6789999998876 6899999987
Q ss_pred HH--HHHhhc----CEEEecCCCCcchhHHHHHHHcCCeEEecCCCc-ccccccCCCEEEeC--CHHHHHHHHHHHHhCC
Q 016975 207 AD--LIFHDY----KVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEE 277 (379)
Q Consensus 207 ~~--~~~~~~----dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~ 277 (379)
.+ ++|+.| |++|+||..|+||++++||||||+|||+|+.|+ .|++.++.+|++++ |+++++++|.++++++
T Consensus 346 ~~~~~~~~~a~~~~dv~v~pS~~Eg~~~~~lEAma~G~PvI~s~~~g~~e~v~~~~~g~l~~~~d~~~la~~i~~ll~~~ 425 (499)
T 2r60_A 346 QELAGCYAYLASKGSVFALTSFYEPFGLAPVEAMASGLPAVVTRNGGPAEILDGGKYGVLVDPEDPEDIARGLLKAFESE 425 (499)
T ss_dssp HHHHHHHHHHHHTTCEEEECCSCBCCCSHHHHHHHTTCCEEEESSBHHHHHTGGGTSSEEECTTCHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHhcCcCCCEEEECcccCCCCcHHHHHHHcCCCEEEecCCCHHHHhcCCceEEEeCCCCHHHHHHHHHHHHhCH
Confidence 77 999999 999999999999999999999999999999965 89999988999987 9999999999999876
Q ss_pred CC--CCcHHHH----hcCCHHHHHHHHHHHHhcccc
Q 016975 278 PA--LPTEAQR----HQLSWESATERFLQVAELDQA 307 (379)
Q Consensus 278 ~~--~~~~~~~----~~~sw~~~~~~~~~~~~~~~~ 307 (379)
.. .++++++ ++|+|+.+++++.++|+....
T Consensus 426 ~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~~~~ 461 (499)
T 2r60_A 426 ETWSAYQEKGKQRVEERYTWQETARGYLEVIQEIAD 461 (499)
T ss_dssp HHHHHHHHHHHHHHHHHSBHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 54 4444333 569999999999999996543
No 8
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=99.98 E-value=7e-33 Score=264.55 Aligned_cols=270 Identities=16% Similarity=0.218 Sum_probs=205.5
Q ss_pred cccccCCCCCCcEEEEcCCcchhhhhcccccccc-cCcEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEE
Q 016975 20 DISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTK-FRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVI 98 (379)
Q Consensus 20 ~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~-~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 98 (379)
.+.+++.+.+||+||++.+....+.. ...+. ..|+|..+|+.+..... ...+.+.+... ...+|.++
T Consensus 98 ~l~~~l~~~~~Dii~~~~~~~~~~~~---~~~~~~~~~~i~~~h~~~~~~~~-------~~~~~~~~~~~--~~~~d~ii 165 (406)
T 2gek_A 98 KVKKWIAEGDFDVLHIHEPNAPSLSM---LALQAAEGPIVATFHTSTTKSLT-------LSVFQGILRPY--HEKIIGRI 165 (406)
T ss_dssp HHHHHHHHHCCSEEEEECCCSSSHHH---HHHHHEESSEEEEECCCCCSHHH-------HHHHHSTTHHH--HTTCSEEE
T ss_pred HHHHHHHhcCCCEEEECCccchHHHH---HHHHhcCCCEEEEEcCcchhhhh-------HHHHHHHHHHH--HhhCCEEE
Confidence 45566677799999998766544321 12222 24999999997543221 11222222221 12379999
Q ss_pred EcChhhhhhhh-----ccceee-cccCCCCccCccccHHHhhcCCCCCcceEEEEEec-ccccCHHHHHHHHHHhHhhcC
Q 016975 99 RLSAATQEYAN-----SIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKM-VWSKGYKELLELLDDHQKELA 171 (379)
Q Consensus 99 ~~S~~~~~~~~-----~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl-~~~Kg~~~li~a~~~l~~~~~ 171 (379)
++|+..++... .++ .+ ||+|...|.+..... ....+++.++|+|++ .+.||++.+++++..+.++.+
T Consensus 166 ~~s~~~~~~~~~~~~~~~~-vi~~~v~~~~~~~~~~~~-----~~~~~~~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~ 239 (406)
T 2gek_A 166 AVSDLARRWQMEALGSDAV-EIPNGVDVASFADAPLLD-----GYPREGRTVLFLGRYDEPRKGMAVLLAALPKLVARFP 239 (406)
T ss_dssp ESSHHHHHHHHHHHSSCEE-ECCCCBCHHHHHTCCCCT-----TCSCSSCEEEEESCTTSGGGCHHHHHHHHHHHHTTST
T ss_pred ECCHHHHHHHHHhcCCCcE-EecCCCChhhcCCCchhh-----hccCCCeEEEEEeeeCccccCHHHHHHHHHHHHHHCC
Confidence 99988665432 344 44 888876664433211 112245789999999 999999999999999998889
Q ss_pred CcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHH--HHHhhcCEEEecCC-CCcchhHHHHHHHcCCeEEecCCCc-
Q 016975 172 GLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPST-TDVVCTTTAEALAMGKIVVCANHPS- 247 (379)
Q Consensus 172 ~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~--~~~~~~dv~v~ps~-~E~~~~~~~EAma~G~PVI~t~~g~- 247 (379)
+++|+|+|+|+. +.+++.++++..++.++|.+++.+ ++|+.||++|+||. .|++|++++|||+||+|||+++.|+
T Consensus 240 ~~~l~i~G~~~~-~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~~e~~~~~~~Ea~a~G~PvI~~~~~~~ 318 (406)
T 2gek_A 240 DVEILIVGRGDE-DELREQAGDLAGHLRFLGQVDDATKASAMRSADVYCAPHLGGESFGIVLVEAMAAGTAVVASDLDAF 318 (406)
T ss_dssp TCEEEEESCSCH-HHHHHHTGGGGGGEEECCSCCHHHHHHHHHHSSEEEECCCSCCSSCHHHHHHHHHTCEEEECCCHHH
T ss_pred CeEEEEEcCCcH-HHHHHHHHhccCcEEEEecCCHHHHHHHHHHCCEEEecCCCCCCCchHHHHHHHcCCCEEEecCCcH
Confidence 999999999998 888888877755899999999986 99999999999996 8999999999999999999999955
Q ss_pred ccccccCCCEEEeC--CHHHHHHHHHHHHhCCCC--CCcHHHH---hcCCHHHHHHHHHHHHhccccc
Q 016975 248 NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQR---HQLSWESATERFLQVAELDQAV 308 (379)
Q Consensus 248 ~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~~--~~~~~~~---~~~sw~~~~~~~~~~~~~~~~~ 308 (379)
.|++.++.+|++++ |+++++++|.++++++.. .++++++ ..|+|+.+++++.++|+.....
T Consensus 319 ~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 386 (406)
T 2gek_A 319 RRVLADGDAGRLVPVDDADGMAAALIGILEDDQLRAGYVARASERVHRYDWSVVSAQIMRVYETVSGA 386 (406)
T ss_dssp HHHHTTTTSSEECCTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHGGGGBHHHHHHHHHHHHHHHCCT
T ss_pred HHHhcCCCceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Confidence 88999989999996 999999999999997654 3444332 5899999999999999965443
No 9
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=99.98 E-value=5.9e-32 Score=264.66 Aligned_cols=210 Identities=16% Similarity=0.165 Sum_probs=169.4
Q ss_pred cceEEEcChhhhhhhh------------------ccceee-cccCCCCccCccc-------------------cHHHhhc
Q 016975 94 CHKVIRLSAATQEYAN------------------SIICNV-HGVNPKFLEIGKK-------------------KKEQQQN 135 (379)
Q Consensus 94 ~d~vi~~S~~~~~~~~------------------~~i~~i-~gvd~~~~~~~~~-------------------~~~~~~~ 135 (379)
+|.++++|+..++... .++.++ ||+|.+.|.+... ...+...
T Consensus 205 ad~vi~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 284 (485)
T 2qzs_A 205 ADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIAM 284 (485)
T ss_dssp CSEEEESSHHHHHHTTSHHHHTTCHHHHHHHHHTTCEEECCCCCCTTTSCTTTCTTSSSCCCTTCGGGGHHHHHHHHHHH
T ss_pred cCeEEecCHHHHHHHhccccCcchHHHHHhhccCCceEEEecCCCccccCccccccccccccccchhHHHHhHHHHHHHc
Confidence 6999999988664432 345555 8999988866432 1122233
Q ss_pred CCCC--CcceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCc--ChHHHHHHHHhcCCeeE-EecCCCCHH--
Q 016975 136 GTHA--FAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGE--DFNQIQEAAEKLKIVVR-VYPGRDHAD-- 208 (379)
Q Consensus 136 ~~~~--~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~--~~~~l~~~~~~~~l~v~-~~g~~~~~~-- 208 (379)
+..+ +++.++|+||+.+.||++.+++|+..+.+ ++++|+|+|+|+ ..+.+++++++++.++. +.|. ++.+
T Consensus 285 ~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~-~~~~~~ 361 (485)
T 2qzs_A 285 GLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLE--QGGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGY-HEAFSH 361 (485)
T ss_dssp TCCCCTTSCEEEEEEEESGGGCHHHHHHHHHHHHH--TTCEEEEEEEECHHHHHHHHHHHHHSTTTEEEEESC-CHHHHH
T ss_pred CCCCCCCCeEEEEeccCccccCHHHHHHHHHHHhh--CCcEEEEEeCCchHHHHHHHHHHHhCCCcEEEeCCC-CHHHHH
Confidence 3332 56899999999999999999999999876 389999999986 36788888888877787 5566 5544
Q ss_pred HHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc-ccccccC---------CCEEEeC--CHHHHHHHHHHHH--
Q 016975 209 LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQF---------PNCRTYD--DRNGFVEATLKAL-- 274 (379)
Q Consensus 209 ~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-~e~i~~~---------~~g~~~~--~~~~l~~~i~~~l-- 274 (379)
++|+.||++|+||..|+||++++||||||+|||+|+.|+ .|++.++ .+|++++ |+++++++|.+++
T Consensus 362 ~~~~~adv~v~pS~~E~~g~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~~ 441 (485)
T 2qzs_A 362 RIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAFVL 441 (485)
T ss_dssp HHHHHCSEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHHHHHHHHHH
T ss_pred HHHHhCCEEEECCccCCCcHHHHHHHHCCCCEEECCCCCccceeccCccccccccccceEEECCCCHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999955 8999988 8999988 9999999999999
Q ss_pred -hCCCC--CCcHHHH-hcCCHHHHHHHHHHHHhccc
Q 016975 275 -AEEPA--LPTEAQR-HQLSWESATERFLQVAELDQ 306 (379)
Q Consensus 275 -~~~~~--~~~~~~~-~~~sw~~~~~~~~~~~~~~~ 306 (379)
+++.. .++++++ ++|||+.++++++++|+...
T Consensus 442 ~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~ly~~~~ 477 (485)
T 2qzs_A 442 WSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLK 477 (485)
T ss_dssp HTSHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Confidence 45543 4554443 89999999999999998654
No 10
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=99.98 E-value=3.8e-32 Score=266.01 Aligned_cols=210 Identities=16% Similarity=0.172 Sum_probs=169.3
Q ss_pred cceEEEcChhhhhhhh----------------ccceee-cccCCCCccCccc-------------------cHHHhhcCC
Q 016975 94 CHKVIRLSAATQEYAN----------------SIICNV-HGVNPKFLEIGKK-------------------KKEQQQNGT 137 (379)
Q Consensus 94 ~d~vi~~S~~~~~~~~----------------~~i~~i-~gvd~~~~~~~~~-------------------~~~~~~~~~ 137 (379)
+|.++++|+..++... .++.++ ||+|.+.|.+... ...+...+.
T Consensus 207 ad~vi~~S~~~~~~~~~~~~g~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 286 (485)
T 1rzu_A 207 ATALSTVSPSYAEEILTAEFGMGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFRI 286 (485)
T ss_dssp CSEEEESCHHHHHHTTSHHHHTTCHHHHHTTGGGEEECCCCBCTTTSCTTTCTTSSSCCBTTBCTTHHHHHHHHHHHHTC
T ss_pred cCEEEecCHhHHHHHhccccCcchHHHHHhhcCCceEEcCCCcccccCCcccccccccccccchhhHHHhHHHHHHhcCC
Confidence 6999999988664432 344555 8999888866432 112223333
Q ss_pred CCC-cceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcC--hHHHHHHHHhcCCeeEE-ecCCCCHH--HHH
Q 016975 138 HAF-AKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED--FNQIQEAAEKLKIVVRV-YPGRDHAD--LIF 211 (379)
Q Consensus 138 ~~~-~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~l~v~~-~g~~~~~~--~~~ 211 (379)
.++ ++.|+|+||+.+.||++.+++|+..+.+ ++++|+|+|+|+. .+.+++++++++.++.+ .|. ++++ ++|
T Consensus 287 ~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~-~~~~~~~~~ 363 (485)
T 1rzu_A 287 DDDGSPLFCVISRLTWQKGIDLMAEAVDEIVS--LGGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGY-NEPLSHLMQ 363 (485)
T ss_dssp CCSSSCEEEEESCBSTTTTHHHHHTTHHHHHH--TTCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESC-CHHHHHHHH
T ss_pred CCCCCeEEEEEccCccccCHHHHHHHHHHHHh--cCceEEEEeCCchHHHHHHHHHHHhCCCcEEEecCC-CHHHHHHHH
Confidence 332 5699999999999999999999999876 3899999999974 67888888888777874 566 5554 899
Q ss_pred hhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc-ccccccC---------CCEEEeC--CHHHHHHHHHHHH---hC
Q 016975 212 HDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQF---------PNCRTYD--DRNGFVEATLKAL---AE 276 (379)
Q Consensus 212 ~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-~e~i~~~---------~~g~~~~--~~~~l~~~i~~~l---~~ 276 (379)
+.||++|+||..|+||++++||||||+|||+|+.|+ .|++.++ .+|++++ |+++++++|.+++ ++
T Consensus 364 ~~adv~v~pS~~E~~~~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~~~~~ 443 (485)
T 1rzu_A 364 AGCDAIIIPSRFEPCGLTQLYALRYGCIPVVARTGGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTVRYYHD 443 (485)
T ss_dssp HHCSEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHHHHHTC
T ss_pred hcCCEEEECcccCCCCHHHHHHHHCCCCEEEeCCCChhheecccccccccccCCcceEeCCCCHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999955 8999988 8999988 9999999999999 55
Q ss_pred CCC--CCcHHHH-hcCCHHHHHHHHHHHHhccc
Q 016975 277 EPA--LPTEAQR-HQLSWESATERFLQVAELDQ 306 (379)
Q Consensus 277 ~~~--~~~~~~~-~~~sw~~~~~~~~~~~~~~~ 306 (379)
+.. .++++++ ++|||+.+++++.++|+...
T Consensus 444 ~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~~~~ 476 (485)
T 1rzu_A 444 PKLWTQMQKLGMKSDVSWEKSAGLYAALYSQLI 476 (485)
T ss_dssp HHHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHhh
Confidence 543 4555444 79999999999999999654
No 11
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=99.97 E-value=2.5e-32 Score=261.78 Aligned_cols=267 Identities=13% Similarity=0.027 Sum_probs=195.8
Q ss_pred ccccCCCCCCcEEEEcCCcchhhhhccccccccc-CcEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcc--eE
Q 016975 21 ISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKF-RYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCH--KV 97 (379)
Q Consensus 21 l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~-~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~v 97 (379)
+.+.+.+.+||+||++.+..+............. .+++..+|........ . +...+.+ +| .+
T Consensus 73 l~~~l~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~----~~~~~~~--~~~~~i 137 (413)
T 3oy2_A 73 LSEFIDVHKPDIVMIYNDPIVIGNYLLAMGKCSHRTKIVLYVDLVSKNIRE---------N----LWWIFSH--PKVVGV 137 (413)
T ss_dssp HHHHHHHHCCSEEEEEECHHHHHHHHHHGGGCCSCCEEEEEECCCSBSCCG---------G----GGGGGGC--TTEEEE
T ss_pred HHHHHHhcCCCEEEEcchHHHHHHHHHHhccCCCCCceeeeccccchhhHH---------H----HHHHHhc--cCCceE
Confidence 4556667799999999544332221011111111 2455666654322111 0 1111111 46 99
Q ss_pred EEcChhhhhhhh-----ccceee-cccCCCCccCccccHHHhhcCCCC--CcceEEEEEecccccCHHHHHHHHHHhHhh
Q 016975 98 IRLSAATQEYAN-----SIICNV-HGVNPKFLEIGKKKKEQQQNGTHA--FAKGAYYIGKMVWSKGYKELLELLDDHQKE 169 (379)
Q Consensus 98 i~~S~~~~~~~~-----~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~--~~~~il~vgrl~~~Kg~~~li~a~~~l~~~ 169 (379)
+++|+..++... .++.++ ||+|.+.|. ..+...+..+ +++.|+|+||+.+.||++.+++|+..+.++
T Consensus 138 i~~S~~~~~~~~~~~~~~~~~vi~ngvd~~~~~-----~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~li~a~~~l~~~ 212 (413)
T 3oy2_A 138 MAMSKCWISDICNYGCKVPINIVSHFVDTKTIY-----DARKLVGLSEYNDDVLFLNMNRNTARKRLDIYVLAAARFISK 212 (413)
T ss_dssp EESSTHHHHHHHHTTCCSCEEECCCCCCCCCCT-----THHHHTTCGGGTTSEEEECCSCSSGGGTHHHHHHHHHHHHHH
T ss_pred EEcCHHHHHHHHHcCCCCceEEeCCCCCHHHHH-----HHHHhcCCCcccCceEEEEcCCCchhcCcHHHHHHHHHHHHh
Confidence 999988664433 234444 899988771 1222223333 577999999999999999999999999988
Q ss_pred cCCcEEEEEcCCcCh------HHHHHHHHhcCCe---------eEEecCCCCHH--HHHhhcCEEEecCCCCcchhHHHH
Q 016975 170 LAGLEVDLYGNGEDF------NQIQEAAEKLKIV---------VRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAE 232 (379)
Q Consensus 170 ~~~~~l~i~G~g~~~------~~l~~~~~~~~l~---------v~~~g~~~~~~--~~~~~~dv~v~ps~~E~~~~~~~E 232 (379)
.++++|+|+|+|+.. +.++++++++++. +.+.|.+++++ ++|+.||++|+||..|+||++++|
T Consensus 213 ~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~~~~~~~~~~adv~v~pS~~E~~~~~~lE 292 (413)
T 3oy2_A 213 YPDAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVDMMYNACDVIVNCSSGEGFGLCSAE 292 (413)
T ss_dssp CTTCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHHHHHHHHHHCSEEEECCSCCSSCHHHHH
T ss_pred CCCcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCHHHHHHHHHhCCEEEeCCCcCCCCcHHHH
Confidence 999999999998865 8888888888874 56668898877 999999999999999999999999
Q ss_pred HHHcCCeEEecCCCc-ccccccCCC---------------EE--EeC--CHHHHHHHHHHHHhCCCC--CCcHHHH----
Q 016975 233 ALAMGKIVVCANHPS-NDFFKQFPN---------------CR--TYD--DRNGFVEATLKALAEEPA--LPTEAQR---- 286 (379)
Q Consensus 233 Ama~G~PVI~t~~g~-~e~i~~~~~---------------g~--~~~--~~~~l~~~i~~~l~~~~~--~~~~~~~---- 286 (379)
|||||+|||+|+.|+ .|++.++.+ |+ +++ |+++++++| ++++++.. .++++++
T Consensus 293 Ama~G~PvI~s~~~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~la~~i-~l~~~~~~~~~~~~~a~~~~~ 371 (413)
T 3oy2_A 293 GAVLGKPLIISAVGGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAF-TFFKDEKNRKEYGKRVQDFVK 371 (413)
T ss_dssp HHTTTCCEEEECCHHHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECCHHHHHHHH-HHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHcCCCEEEcCCCChHHHHccCcccccccccccccccccCcceeeCCCCHHHHHHHH-HHhcCHHHHHHHHHHHHHHHH
Confidence 999999999999955 889988777 77 766 999999999 99987655 4544333
Q ss_pred hcCCHHHHHHHHHHHHhccccc
Q 016975 287 HQLSWESATERFLQVAELDQAV 308 (379)
Q Consensus 287 ~~~sw~~~~~~~~~~~~~~~~~ 308 (379)
++|||+.+++++.++|+.....
T Consensus 372 ~~fs~~~~~~~~~~~~~~~~~~ 393 (413)
T 3oy2_A 372 TKPTWDDISSDIIDFFNSLLRV 393 (413)
T ss_dssp TSCCHHHHHHHHHHHHHHHTC-
T ss_pred HhCCHHHHHHHHHHHHHHHHhh
Confidence 6899999999999999976543
No 12
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=99.97 E-value=4.8e-32 Score=253.33 Aligned_cols=243 Identities=13% Similarity=-0.021 Sum_probs=194.3
Q ss_pred cccccCCCCCCcEEEEcCCcchhhhhcccccccccCcEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEEE
Q 016975 20 DISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIR 99 (379)
Q Consensus 20 ~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 99 (379)
.+.+++++.+||+||++.+....+. ......| |.++|+.+.... .+|.+++
T Consensus 75 ~l~~~l~~~~~Dvi~~~~~~~~~~~-----~~~~~~p-v~~~h~~~~~~~-----------------------~~d~ii~ 125 (342)
T 2iuy_A 75 EIERWLRTADVDVVHDHSGGVIGPA-----GLPPGTA-FISSHHFTTRPV-----------------------NPVGCTY 125 (342)
T ss_dssp HHHHHHHHCCCSEEEECSSSSSCST-----TCCTTCE-EEEEECSSSBCS-----------------------CCTTEEE
T ss_pred HHHHHHHhcCCCEEEECCchhhHHH-----HhhcCCC-EEEecCCCCCcc-----------------------cceEEEE
Confidence 4566677789999999886543222 1112238 999998753211 0599999
Q ss_pred cChhhhhhhh--ccceee-cccCCCCccCccccHHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEE
Q 016975 100 LSAATQEYAN--SIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVD 176 (379)
Q Consensus 100 ~S~~~~~~~~--~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~ 176 (379)
+|+..++... .++.++ ||+|.+.|.+... ..++++.++|+||+.+.||++.+++++..+ +++|+
T Consensus 126 ~S~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~--------~~~~~~~i~~vG~~~~~Kg~~~li~a~~~~-----~~~l~ 192 (342)
T 2iuy_A 126 SSRAQRAHCGGGDDAPVIPIPVDPARYRSAAD--------QVAKEDFLLFMGRVSPHKGALEAAAFAHAC-----GRRLV 192 (342)
T ss_dssp SCHHHHHHTTCCTTSCBCCCCBCGGGSCCSTT--------CCCCCSCEEEESCCCGGGTHHHHHHHHHHH-----TCCEE
T ss_pred cCHHHHHHHhcCCceEEEcCCCChhhcCcccc--------cCCCCCEEEEEeccccccCHHHHHHHHHhc-----CcEEE
Confidence 9998886654 344445 8999877755432 112355899999999999999999999886 78999
Q ss_pred EEcCCcChHHHHHHHHhcCCeeEEecCCCCHH--HHHhhcCEEEecCC----------CCcchhHHHHHHHcCCeEEecC
Q 016975 177 LYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPST----------TDVVCTTTAEALAMGKIVVCAN 244 (379)
Q Consensus 177 i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~--~~~~~~dv~v~ps~----------~E~~~~~~~EAma~G~PVI~t~ 244 (379)
|+|+|++.+.+++++++++.++.|+|.+++.+ ++|+.||++|+||. .|+||++++||||||+|||+|+
T Consensus 193 i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~l~~~~~~adv~v~ps~~~~~~~~~~~~E~~~~~~~EAma~G~PvI~s~ 272 (342)
T 2iuy_A 193 LAGPAWEPEYFDEITRRYGSTVEPIGEVGGERRLDLLASAHAVLAMSQAVTGPWGGIWCEPGATVVSEAAVSGTPVVGTG 272 (342)
T ss_dssp EESCCCCHHHHHHHHHHHTTTEEECCCCCHHHHHHHHHHCSEEEECCCCCCCTTCSCCCCCCCHHHHHHHHTTCCEEECC
T ss_pred EEeCcccHHHHHHHHHHhCCCEEEeccCCHHHHHHHHHhCCEEEECCcccccccccccccCccHHHHHHHhcCCCEEEcC
Confidence 99999999999999888877899999999986 99999999999999 8999999999999999999999
Q ss_pred CCc-cccccc--CCCEEEeC-CHHHHHHHHHHHHhCCCCCCcHHHHhcCCHHHHHHHHHHHHhccc
Q 016975 245 HPS-NDFFKQ--FPNCRTYD-DRNGFVEATLKALAEEPALPTEAQRHQLSWESATERFLQVAELDQ 306 (379)
Q Consensus 245 ~g~-~e~i~~--~~~g~~~~-~~~~l~~~i~~~l~~~~~~~~~~~~~~~sw~~~~~~~~~~~~~~~ 306 (379)
.|+ .|++.+ +.+|++++ |+++++++|.++++ .....+...++|+|+.+++++.++|+...
T Consensus 273 ~~~~~e~~~~~~~~~g~~~~~d~~~l~~~i~~l~~--~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 336 (342)
T 2iuy_A 273 NGCLAEIVPSVGEVVGYGTDFAPDEARRTLAGLPA--SDEVRRAAVRLWGHVTIAERYVEQYRRLL 336 (342)
T ss_dssp TTTHHHHGGGGEEECCSSSCCCHHHHHHHHHTSCC--HHHHHHHHHHHHBHHHHHHHHHHHHHHHH
T ss_pred CCChHHHhcccCCCceEEcCCCHHHHHHHHHHHHH--HHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 965 889988 88999999 99999999999876 11111123378999999999999999654
No 13
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=99.97 E-value=6.8e-31 Score=259.05 Aligned_cols=211 Identities=17% Similarity=0.166 Sum_probs=166.1
Q ss_pred hcceEEEcChhhh-hhhh--------------ccceee-cccCCCCccCcccc--------------------HHHhhc-
Q 016975 93 YCHKVIRLSAATQ-EYAN--------------SIICNV-HGVNPKFLEIGKKK--------------------KEQQQN- 135 (379)
Q Consensus 93 ~~d~vi~~S~~~~-~~~~--------------~~i~~i-~gvd~~~~~~~~~~--------------------~~~~~~- 135 (379)
+||.|++||+..+ ++.. .++..| ||||.+.|.|.... ......
T Consensus 241 ~ad~v~tVS~~~a~ei~~~~~~g~~l~~~~~~~~i~~I~NGiD~~~~~p~~d~~~~~~~~~~~~~~~K~~~k~~l~~~~g 320 (536)
T 3vue_A 241 EADRVLTVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNKEALQAEAG 320 (536)
T ss_dssp HCSEEEESCHHHHHHHHTTCCCCSSSCCCSCCCSCEECCCCCCTTTSCTTTCSSSSCCCCTTTHHHHHHHHHHHHHHHTT
T ss_pred hccEEEEcCHHHhhhhhcccccccccccccccCCeEEEECCcchhhcCCCCccccccccchhhhhhhhHHHHHHHHHhcC
Confidence 3799999997755 3221 245555 99999888764211 001111
Q ss_pred -CCCCCcceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcC--hHHHHHHHHhcCCeeEEecCCCCHH--HH
Q 016975 136 -GTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED--FNQIQEAAEKLKIVVRVYPGRDHAD--LI 210 (379)
Q Consensus 136 -~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~l~v~~~g~~~~~~--~~ 210 (379)
...++.++|+|+||+.++||++.|++|+.++.++ +.+++++|.|+. ...++.....++.++.+.+..+.++ .+
T Consensus 321 l~~d~~~p~i~~vgRl~~~Kg~~~li~a~~~l~~~--~~~l~l~G~G~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 398 (536)
T 3vue_A 321 LPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQE--DVQIVLLGTGKKKFEKLLKSMEEKYPGKVRAVVKFNAPLAHLI 398 (536)
T ss_dssp SCCCTTSCEEEEECCBSGGGCHHHHHHHHHHHTTS--SCEEEEECCBCHHHHHHHHHHHHHSTTTEEEECSCCHHHHHHH
T ss_pred CCCCCCCcEEEEEeeccccCChHHHHHHHHHhHhh--CCeEEEEeccCchHHHHHHHHHhhcCCceEEEEeccHHHHHHH
Confidence 1245678999999999999999999999999764 678888887765 4556677777888999999888777 89
Q ss_pred HhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc-ccccccCCCEE----------EeC--CHHHHHHHHHHHHhCC
Q 016975 211 FHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCR----------TYD--DRNGFVEATLKALAEE 277 (379)
Q Consensus 211 ~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-~e~i~~~~~g~----------~~~--~~~~l~~~i~~~l~~~ 277 (379)
|+.||+||+||.+|+||++++|||+||+|||+|++|+ .|++.++.||+ +++ |+++|+++|.++++..
T Consensus 399 ~~~aD~~v~PS~~E~fgl~~lEAma~G~PvI~s~~gG~~e~V~dg~~G~~~~~~~~~g~l~~~~d~~~la~ai~ral~~~ 478 (536)
T 3vue_A 399 MAGADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRAIKVV 478 (536)
T ss_dssp HHHCSEEEECCSCCSSCSHHHHHHHTTCCEEECSCTHHHHHCCBTTTEEECCCCCSCTTCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHhhheeecccccCCCCHHHHHHHHcCCCEEEcCCCCchheeeCCCCccccccCCCceeEECCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999976 99999999998 555 8999999999888632
Q ss_pred CC----CCcHH-HHhcCCHHHHHHHHHHHHhcc
Q 016975 278 PA----LPTEA-QRHQLSWESATERFLQVAELD 305 (379)
Q Consensus 278 ~~----~~~~~-~~~~~sw~~~~~~~~~~~~~~ 305 (379)
.. ++.++ ..+.|||++++++|+++|+.-
T Consensus 479 ~~~~~~~~~~~am~~~fSW~~~A~~y~~ly~~L 511 (536)
T 3vue_A 479 GTPAYEEMVRNCMNQDLSWKGPAKNWENVLLGL 511 (536)
T ss_dssp TSHHHHHHHHHHHHSCCSSHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 22 22222 237899999999999999853
No 14
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=99.97 E-value=1.2e-30 Score=246.28 Aligned_cols=211 Identities=17% Similarity=0.167 Sum_probs=171.7
Q ss_pred hcceEEEcChhhhhhhh-------ccceee-cccCCCCccCcccc----HHHhhcCCCCCcceEEEEEecccccCHHHHH
Q 016975 93 YCHKVIRLSAATQEYAN-------SIICNV-HGVNPKFLEIGKKK----KEQQQNGTHAFAKGAYYIGKMVWSKGYKELL 160 (379)
Q Consensus 93 ~~d~vi~~S~~~~~~~~-------~~i~~i-~gvd~~~~~~~~~~----~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li 160 (379)
.+|.++++|+..++... .++..+ ||+|.+.|.+.... ..+...+..++++.++|+|++.+.||++.++
T Consensus 136 ~~d~ii~~s~~~~~~~~~~~~~~~~~~~vi~ngv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li 215 (374)
T 2iw1_A 136 KSTKLMMLTDKQIADFQKHYQTEPERFQILPPGIYPDRKYSEQIPNSREIYRQKNGIKEQQNLLLQVGSDFGRKGVDRSI 215 (374)
T ss_dssp CCCEEEESCHHHHHHHHHHHCCCGGGEEECCCCCCGGGSGGGSCTTHHHHHHHHTTCCTTCEEEEEECSCTTTTTHHHHH
T ss_pred CCcEEEEcCHHHHHHHHHHhCCChhheEEecCCcCHHhcCcccchhHHHHHHHHhCCCCCCeEEEEeccchhhcCHHHHH
Confidence 47999999988664432 234444 89998877654321 1223334445678999999999999999999
Q ss_pred HHHHHhHhh-cCCcEEEEEcCCcChHHHHHHHHhcCC--eeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcC
Q 016975 161 ELLDDHQKE-LAGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMG 237 (379)
Q Consensus 161 ~a~~~l~~~-~~~~~l~i~G~g~~~~~l~~~~~~~~l--~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G 237 (379)
+++..+.+. .++++|+|+|+|+. +.+++.++++++ ++.++|..++..++|+.||++|+||..|+||++++|||+||
T Consensus 216 ~a~~~l~~~~~~~~~l~i~G~g~~-~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~ps~~e~~~~~~~Ea~a~G 294 (374)
T 2iw1_A 216 EALASLPESLRHNTLLFVVGQDKP-RKFEALAEKLGVRSNVHFFSGRNDVSELMAAADLLLHPAYQEAAGIVLLEAITAG 294 (374)
T ss_dssp HHHHTSCHHHHHTEEEEEESSSCC-HHHHHHHHHHTCGGGEEEESCCSCHHHHHHHCSEEEECCSCCSSCHHHHHHHHHT
T ss_pred HHHHHhHhccCCceEEEEEcCCCH-HHHHHHHHHcCCCCcEEECCCcccHHHHHHhcCEEEeccccCCcccHHHHHHHCC
Confidence 999998776 57999999999885 788888888875 78999986666699999999999999999999999999999
Q ss_pred CeEEecCCCc-ccccccCCCEEEeC---CHHHHHHHHHHHHhCCCC--CCcHHHH---hcCCHHHHHHHHHHHHhc
Q 016975 238 KIVVCANHPS-NDFFKQFPNCRTYD---DRNGFVEATLKALAEEPA--LPTEAQR---HQLSWESATERFLQVAEL 304 (379)
Q Consensus 238 ~PVI~t~~g~-~e~i~~~~~g~~~~---~~~~l~~~i~~~l~~~~~--~~~~~~~---~~~sw~~~~~~~~~~~~~ 304 (379)
+|||+|+.|+ .|++.++.+|++++ |+++++++|.++++++.. .++++++ ..++|+..++++.++++.
T Consensus 295 ~Pvi~~~~~~~~e~i~~~~~g~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 370 (374)
T 2iw1_A 295 LPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKALTQSPLRMAWAENARHYADTQDLYSLPEKAADIITG 370 (374)
T ss_dssp CCEEEETTSTTTHHHHHHTCEEEECSSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHC
T ss_pred CCEEEecCCCchhhhccCCceEEeCCCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999954 89999989998885 999999999999997654 4444433 678999999999988874
No 15
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=99.95 E-value=1.4e-28 Score=235.40 Aligned_cols=238 Identities=17% Similarity=0.213 Sum_probs=171.6
Q ss_pred CCcEEEEcCCcchhhhhccccccccc-CcEEEEeccChH-HHHHHhhcchHHHHHHHHHHHHHHHHhcceEEEcChhhhh
Q 016975 29 VADIAVLEEPEHLTWFHHGKRWKTKF-RYVVGIVHTNYL-EYVKREKNGRLQAFLLKYANSWLVDIYCHKVIRLSAATQE 106 (379)
Q Consensus 29 ~~DvV~~~~p~~~~~~~~~~~~~~~~-~~vv~~~h~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~~~ 106 (379)
++|+||........+. .+.+.. .|++.++|+.+. .... .. ....+.....+ ..+|.++++|+..++
T Consensus 124 ~~DvIh~~~~~~~~~~----~~~~~~~~p~v~~~h~~~~~~~~~--~~----~~~~~~~~~~~--~~ad~vi~~S~~~~~ 191 (406)
T 2hy7_A 124 ESDVIVFESGIAVAFI----ELAKRVNPAAKLVYRASDGLSTIN--VA----SYIEREFDRVA--PTLDVIALVSPAMAA 191 (406)
T ss_dssp HCSEEEEESSGGGGGH----HHHHHHCTTSEEEEEESSCHHHHT--CC----HHHHHHHHHHG--GGCSEEEESCGGGGG
T ss_pred CCCEEEECCchHHHHH----HHHHHhCCCEEEEEeccchhhccc--cc----HHHHHHHHHHH--HhCCEEEEcCHHHHH
Confidence 6999994332211111 122222 488999997543 2221 11 11222222221 226999999998876
Q ss_pred hhhc--cceee-cccCCCCccCccccHHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcC
Q 016975 107 YANS--IICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED 183 (379)
Q Consensus 107 ~~~~--~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~ 183 (379)
...+ ++.++ ||+|.+.|.+.... ..+.++.++|+||+.+.||+ +..+.+..++++|+|+|+|+
T Consensus 192 ~~~~~~~i~vipngvd~~~f~~~~~~-------~~~~~~~i~~vGrl~~~Kg~------~~~l~~~~~~~~l~ivG~g~- 257 (406)
T 2hy7_A 192 EVVSRDNVFHVGHGVDHNLDQLGDPS-------PYAEGIHAVAVGSMLFDPEF------FVVASKAFPQVTFHVIGSGM- 257 (406)
T ss_dssp GCSCSTTEEECCCCBCTTHHHHHCSC-------SCCSSEEEEEECCTTBCHHH------HHHHHHHCTTEEEEEESCSS-
T ss_pred HHHhcCCEEEEcCCcChHhcCccccc-------ccCCCcEEEEEeccccccCH------HHHHHHhCCCeEEEEEeCch-
Confidence 5543 44445 89998877543221 11223689999999999999 33444557899999999987
Q ss_pred hHHHHHHHHhcCC--eeEEecCCCCHH--HHHhhcCEEEecCCCCcchhHHHHHH-------HcCCeEEecCCCcccccc
Q 016975 184 FNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEAL-------AMGKIVVCANHPSNDFFK 252 (379)
Q Consensus 184 ~~~l~~~~~~~~l--~v~~~g~~~~~~--~~~~~~dv~v~ps~~E~~~~~~~EAm-------a~G~PVI~t~~g~~e~i~ 252 (379)
++++++ +|.|+|.+++++ ++|+.||++|+||..|+||++++||| |||+|||+|+. +.
T Consensus 258 -------~~~~~l~~~V~f~G~~~~~~l~~~~~~adv~v~ps~~E~~~~~~lEAm~Kl~eYla~G~PVIas~~-----v~ 325 (406)
T 2hy7_A 258 -------GRHPGYGDNVIVYGEMKHAQTIGYIKHARFGIAPYASEQVPVYLADSSMKLLQYDFFGLPAVCPNA-----VV 325 (406)
T ss_dssp -------CCCTTCCTTEEEECCCCHHHHHHHHHTCSEEECCBSCSCCCTTHHHHCHHHHHHHHHTCCEEEEGG-----GT
T ss_pred -------HHhcCCCCCEEEcCCCCHHHHHHHHHhcCEEEECCCcccCchHHHHHHHHHHHHhhCCCcEEEehh-----cc
Confidence 333443 799999998887 99999999999999999999999999 99999999988 66
Q ss_pred cCCCEEE-eC--CHHHHHHHHHHHHhCCCCCCcHHHHhcCCHHHHHHHHHHH--Hhccccc
Q 016975 253 QFPNCRT-YD--DRNGFVEATLKALAEEPALPTEAQRHQLSWESATERFLQV--AELDQAV 308 (379)
Q Consensus 253 ~~~~g~~-~~--~~~~l~~~i~~~l~~~~~~~~~~~~~~~sw~~~~~~~~~~--~~~~~~~ 308 (379)
++.+|++ ++ |+++|+++|.++++++.. ...+.|+|+.++++++++ |+.....
T Consensus 326 ~~~~G~l~v~~~d~~~la~ai~~ll~~~~~----~~~~~~sw~~~a~~~~~~~~y~~~~~~ 382 (406)
T 2hy7_A 326 GPYKSRFGYTPGNADSVIAAITQALEAPRV----RYRQCLNWSDTTDRVLDPRAYPETRLY 382 (406)
T ss_dssp CSCSSEEEECTTCHHHHHHHHHHHHHCCCC----CCSCCCBHHHHHHHHHCGGGSGGGBSS
T ss_pred cCcceEEEeCCCCHHHHHHHHHHHHhCcch----hhhhcCCHHHHHHHHHHhhcccccCcC
Confidence 7788988 77 999999999999998772 234689999999999999 8865533
No 16
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=99.95 E-value=8.5e-28 Score=230.09 Aligned_cols=191 Identities=10% Similarity=0.055 Sum_probs=144.8
Q ss_pred eEEEcChhhhhhhhcc------ceee-cccCCCCccCccccHHHhhcCCCCCcceEEEEEec-ccccCHHHHHHHHHHhH
Q 016975 96 KVIRLSAATQEYANSI------ICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKM-VWSKGYKELLELLDDHQ 167 (379)
Q Consensus 96 ~vi~~S~~~~~~~~~~------i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl-~~~Kg~~~li~a~~~l~ 167 (379)
.+|++|+.+++...+. +..+ +|+|.+.|.+. ....+++..++++||+ .++||++.+++|+..+.
T Consensus 197 ~vi~~S~~~~~~l~~~g~~~~~~~~i~~g~d~~~~~~~--------~~~~~~~~~il~~gr~~~~~Kg~~~li~A~~~l~ 268 (413)
T 2x0d_A 197 IAVFNSELLKQYFNNKGYNFTDEYFFQPKINTTLKNYI--------NDKRQKEKIILVYGRPSVKRNAFTLIVEALKIFV 268 (413)
T ss_dssp EEEEESHHHHHHHHHHTCCCSEEEEECCCCCHHHHTTT--------TSCCCCCSEEEEEECTTCGGGCHHHHHHHHHHHH
T ss_pred EEEEcCHHHHHHHHHcCCCCCceEEeCCCcCchhhccc--------ccccCCCCEEEEEecCchhccCHHHHHHHHHHHH
Confidence 5899998877655421 2222 67775544321 0122335579999996 68999999999999998
Q ss_pred hhcCC---cEEEEEcCCcChHHHHHHHHhcC--CeeEEecCCCCHH--HHHhhcCEEEecCCCCcchhHHHHHHHcCCeE
Q 016975 168 KELAG---LEVDLYGNGEDFNQIQEAAEKLK--IVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIV 240 (379)
Q Consensus 168 ~~~~~---~~l~i~G~g~~~~~l~~~~~~~~--l~v~~~g~~~~~~--~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PV 240 (379)
++.|+ ++|+++|+|+... +++ .++.|.|.+++++ ++|+.||+||+||.+|+||++++||||||+||
T Consensus 269 ~~~~~~~~~~l~ivG~~~~~~-------~l~~~~~v~f~G~~~~~~l~~~~~~adv~v~pS~~E~~g~~~lEAmA~G~PV 341 (413)
T 2x0d_A 269 QKYDRSNEWKIISVGEKHKDI-------ALGKGIHLNSLGKLTLEDYADLLKRSSIGISLMISPHPSYPPLEMAHFGLRV 341 (413)
T ss_dssp HHCTTGGGCEEEEEESCCCCE-------EEETTEEEEEEESCCHHHHHHHHHHCCEEECCCSSSSCCSHHHHHHHTTCEE
T ss_pred HhCCCCCceEEEEEcCCchhh-------hcCCcCcEEEcCCCCHHHHHHHHHhCCEEEEecCCCCCCcHHHHHHhCCCcE
Confidence 87775 8999999988742 233 3788999998888 99999999999999999999999999999999
Q ss_pred EecCCCcccccccCCCEEEeC--CHHHHHHHHHHHHhCCCCCCcHHHH---hcCCHHHHHHHHHHHHh
Q 016975 241 VCANHPSNDFFKQFPNCRTYD--DRNGFVEATLKALAEEPALPTEAQR---HQLSWESATERFLQVAE 303 (379)
Q Consensus 241 I~t~~g~~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~~~~~~~~~---~~~sw~~~~~~~~~~~~ 303 (379)
|+++.|..|++.++.+|++++ |+++++++|.++++++..... +++ +.|+|+.+.++ .+.|+
T Consensus 342 V~~~~g~~e~v~~~~~G~lv~~~d~~~la~ai~~ll~~~~~~~~-~~~~~~~~~~W~~~~~~-~~~~~ 407 (413)
T 2x0d_A 342 ITNKYENKDLSNWHSNIVSLEQLNPENIAETLVELCMSFNNRDV-DKKESSNMMFYINEFNE-FSFIK 407 (413)
T ss_dssp EEECBTTBCGGGTBTTEEEESSCSHHHHHHHHHHHHHHTC--------CCBSCGGGCCCC----TTHH
T ss_pred EEeCCCcchhhhcCCCEEEeCCCCHHHHHHHHHHHHcCHHHHHH-hHHHHHHhCCHHHHHHH-HHHHH
Confidence 996657789999999999887 999999999999998766322 222 67999998776 44443
No 17
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=99.94 E-value=2e-27 Score=198.65 Aligned_cols=154 Identities=12% Similarity=0.108 Sum_probs=126.6
Q ss_pred cceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHH--HHHhhcCEEE
Q 016975 141 AKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFL 218 (379)
Q Consensus 141 ~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~--~~~~~~dv~v 218 (379)
++.|+|+|++.+.||++.+++++..+++ .++++|+|+|+|++.+.+++.++++++++.+ |.+++.+ ++|+.||++|
T Consensus 2 ~~~i~~~G~~~~~Kg~~~li~a~~~l~~-~~~~~l~i~G~g~~~~~~~~~~~~~~~~v~~-g~~~~~~~~~~~~~adv~v 79 (166)
T 3qhp_A 2 PFKIAMVGRYSNEKNQSVLIKAVALSKY-KQDIVLLLKGKGPDEKKIKLLAQKLGVKAEF-GFVNSNELLEILKTCTLYV 79 (166)
T ss_dssp CEEEEEESCCSTTTTHHHHHHHHHTCTT-GGGEEEEEECCSTTHHHHHHHHHHHTCEEEC-CCCCHHHHHHHHTTCSEEE
T ss_pred ceEEEEEeccchhcCHHHHHHHHHHhcc-CCCeEEEEEeCCccHHHHHHHHHHcCCeEEE-eecCHHHHHHHHHhCCEEE
Confidence 4589999999999999999999999853 4899999999999999999999999998888 9998777 9999999999
Q ss_pred ecCCCCcchhHHHHHHHcCC-eEEecC-CCc-ccccccCCCEEEeC-CHHHHHHHHHHHHhCCCC--CCcHHHH---hcC
Q 016975 219 NPSTTDVVCTTTAEALAMGK-IVVCAN-HPS-NDFFKQFPNCRTYD-DRNGFVEATLKALAEEPA--LPTEAQR---HQL 289 (379)
Q Consensus 219 ~ps~~E~~~~~~~EAma~G~-PVI~t~-~g~-~e~i~~~~~g~~~~-~~~~l~~~i~~~l~~~~~--~~~~~~~---~~~ 289 (379)
+||..|+||++++|||+||+ |||+|+ .|+ .+++.++.+ ++.+ |+++++++|.++++++.. .++.+++ ++|
T Consensus 80 ~ps~~e~~~~~~~Eama~G~vPvi~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 158 (166)
T 3qhp_A 80 HAANVESEAIACLEAISVGIVPVIANSPLSATRQFALDERS-LFEPNNAKDLSAKIDWWLENKLERERMQNEYAKSALNY 158 (166)
T ss_dssp ECCCSCCCCHHHHHHHHTTCCEEEECCTTCGGGGGCSSGGG-EECTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred ECCcccCccHHHHHHHhcCCCcEEeeCCCCchhhhccCCce-EEcCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999998 999965 465 677777655 3333 999999999999997654 4444332 789
Q ss_pred CHHHHHHH
Q 016975 290 SWESATER 297 (379)
Q Consensus 290 sw~~~~~~ 297 (379)
+|+.++++
T Consensus 159 s~~~~~~~ 166 (166)
T 3qhp_A 159 TLENSVIQ 166 (166)
T ss_dssp C-------
T ss_pred ChhhhhcC
Confidence 99988764
No 18
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=99.94 E-value=6.8e-27 Score=227.02 Aligned_cols=189 Identities=14% Similarity=0.084 Sum_probs=143.0
Q ss_pred ceee-cccCCCCccCccc------cHHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhhcCC----cEEEEEcC
Q 016975 112 ICNV-HGVNPKFLEIGKK------KKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAG----LEVDLYGN 180 (379)
Q Consensus 112 i~~i-~gvd~~~~~~~~~------~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~----~~l~i~G~ 180 (379)
+.++ +|||++.|.+... ....+.... ++++|+++||+.+.||++.+++|++.+.+++|+ +.|+++|+
T Consensus 221 v~vip~GID~~~f~~~~~~~~~~~~~~lr~~~~--~~~vil~VgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vG~ 298 (482)
T 1uqt_A 221 TEVYPIGIEPKEIAKQAAGPLPPKLAQLKAELK--NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAP 298 (482)
T ss_dssp EEECCCCCCHHHHHHHHHSCCCHHHHHHHHHTT--TCEEEEEECCBCGGGCHHHHHHHHHHHHHHCGGGTTTEEEEEECC
T ss_pred EEEEeccCCHHHHHHHhcCcchHHHHHHHHHhC--CCEEEEEEeCCcccCCHHHHHHHHHHHHHhCccccCcEEEEEEEC
Confidence 3444 8999877754211 111122222 467999999999999999999999999887764 77999985
Q ss_pred -----CcC----hHHHHHHHHhcCC--------eeEEe-cCCCCHH--HHHhhcCEEEecCCCCcchhHHHHHHHcCC--
Q 016975 181 -----GED----FNQIQEAAEKLKI--------VVRVY-PGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGK-- 238 (379)
Q Consensus 181 -----g~~----~~~l~~~~~~~~l--------~v~~~-g~~~~~~--~~~~~~dv~v~ps~~E~~~~~~~EAma~G~-- 238 (379)
+++ .+++++++.+.+. .+.++ |.++..+ .+|+.||+||+||..||||++++||||||+
T Consensus 299 p~~~~~~~~~~l~~~l~~l~~~in~~~g~~~~~~v~~~~g~v~~~el~~ly~~ADv~v~pS~~EGfgLv~lEAmA~g~~~ 378 (482)
T 1uqt_A 299 TSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPA 378 (482)
T ss_dssp BCSTTSHHHHHHHHHHHHHHHHHHHHHCBTTBCSEEEECSCCCHHHHHHHHHHCSEEEECCSSBSCCHHHHHHHHHSCTT
T ss_pred CCccchHHHHHHHHHHHHHHHHHhhhcccCCCceEEEeCCCCCHHHHHHHHHHccEEEECCCcccCCchHHHHHHhCCCC
Confidence 332 2334444444321 36654 7788877 999999999999999999999999999997
Q ss_pred ---eEEecCC-CcccccccCCCEEEeC--CHHHHHHHHHHHHhCCCC---CCcHHHH---hcCCHHHHHHHHHHHHhcc
Q 016975 239 ---IVVCANH-PSNDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA---LPTEAQR---HQLSWESATERFLQVAELD 305 (379)
Q Consensus 239 ---PVI~t~~-g~~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~~---~~~~~~~---~~~sw~~~~~~~~~~~~~~ 305 (379)
|||+|+. |+.+.+. +|++++ |+++++++|.+++++++. .+.++.+ ..|||+..++++++.|+.+
T Consensus 379 ~~gpvV~S~~~G~~~~l~---~g~lv~p~d~~~lA~ai~~lL~~~~~~r~~~~~~~~~~v~~~s~~~~a~~~l~~l~~~ 454 (482)
T 1uqt_A 379 NPGVLVLSQFAGAANELT---SALIVNPYDRDEVAAALDRALTMSLAERISRHAEMLDVIVKNDINHWQECFISDLKQI 454 (482)
T ss_dssp SCCEEEEETTBGGGGTCT---TSEEECTTCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred CCCCEEEECCCCCHHHhC---CeEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 9999998 6677772 688887 999999999999987543 2333222 6799999999999999876
No 19
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=99.94 E-value=1.5e-26 Score=199.32 Aligned_cols=162 Identities=19% Similarity=0.190 Sum_probs=139.5
Q ss_pred cccCCCCcc--Cccc-----cHHHhhcCCCCCcceEEEEEecc-cccCHHHHHHHHHHhH--hhcCCcEEEEEcCCc--C
Q 016975 116 HGVNPKFLE--IGKK-----KKEQQQNGTHAFAKGAYYIGKMV-WSKGYKELLELLDDHQ--KELAGLEVDLYGNGE--D 183 (379)
Q Consensus 116 ~gvd~~~~~--~~~~-----~~~~~~~~~~~~~~~il~vgrl~-~~Kg~~~li~a~~~l~--~~~~~~~l~i~G~g~--~ 183 (379)
||+|.+.|. +... ....+.....++++.|+|+|++. +.||++.+++++..+. ++.++++|+|+|+++ .
T Consensus 4 ngvd~~~f~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~~G~~~~~~K~~~~li~a~~~l~~~~~~~~~~l~i~G~~~~~~ 83 (200)
T 2bfw_A 4 NGIDCSFWNESYLTGSRDERKKSLLSKFGMDEGVTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPEL 83 (200)
T ss_dssp -CCCTTTSSGGGSCSCHHHHHHHHHHHTTCCSCEEEEEESCBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECCBCHHH
T ss_pred CccChhhccccccccchhhHHHHHHHHcCCCCCCEEEEeeccccccCCHHHHHHHHHHHHhhccCCCeEEEEECCCChHH
Confidence 899999888 6652 22222223333456999999999 9999999999999997 777899999999998 7
Q ss_pred hHHHHHHHHhcCCeeEE-ecCCCCHH--HHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc-ccccccCCCEEE
Q 016975 184 FNQIQEAAEKLKIVVRV-YPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRT 259 (379)
Q Consensus 184 ~~~l~~~~~~~~l~v~~-~g~~~~~~--~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-~e~i~~~~~g~~ 259 (379)
.+.+++.+++++ ++.+ +|.+++.+ .+|+.||++|+||..|++|++++|||+||+|||+++.|+ .+++ ++.+|++
T Consensus 84 ~~~l~~~~~~~~-~v~~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~~-~~~~g~~ 161 (200)
T 2bfw_A 84 EGWARSLEEKHG-NVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDII-TNETGIL 161 (200)
T ss_dssp HHHHHHHHHHCT-TEEEECSCCCHHHHHHHHTTCSEEEECCSCCSSCHHHHHHHHTTCEEEEESCHHHHHHC-CTTTCEE
T ss_pred HHHHHHHHHhcC-CEEEEeccCCHHHHHHHHHHCCEEEECCCCCCccHHHHHHHHCCCCEEEeCCCChHHHc-CCCceEE
Confidence 888999999888 9999 99999777 999999999999999999999999999999999999965 8888 8889999
Q ss_pred eC--CHHHHHHHHHHHHh-CCCC
Q 016975 260 YD--DRNGFVEATLKALA-EEPA 279 (379)
Q Consensus 260 ~~--~~~~l~~~i~~~l~-~~~~ 279 (379)
++ |+++++++|.++++ ++..
T Consensus 162 ~~~~~~~~l~~~i~~l~~~~~~~ 184 (200)
T 2bfw_A 162 VKAGDPGELANAILKALELSRSD 184 (200)
T ss_dssp ECTTCHHHHHHHHHHHHHCCHHH
T ss_pred ecCCCHHHHHHHHHHHHhcCHHH
Confidence 88 99999999999998 7543
No 20
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.93 E-value=2.1e-26 Score=229.60 Aligned_cols=257 Identities=12% Similarity=0.044 Sum_probs=181.4
Q ss_pred cccccCCCCCCcEEEEcCCcchhhhhcccccccccCcEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEEE
Q 016975 20 DISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIR 99 (379)
Q Consensus 20 ~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 99 (379)
.+.+++.+.+|||||.......... ...+..+..|++..+|+... ..+ . ..+....+|.+++
T Consensus 273 ~l~~~i~~~~~Div~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~------~~~-~---------~~~~~~~~d~~i~ 334 (568)
T 2vsy_A 273 ATAKHIRHHGIDLLFDLRGWGGGGR--PEVFALRPAPVQVNWLAYPG------TSG-A---------PWMDYVLGDAFAL 334 (568)
T ss_dssp HHHHHHHHTTCSEEEECSSCTTCSS--CHHHHTCCSSEEEEESSSSS------CCC-C---------TTCCEEEECTTTS
T ss_pred HHHHHHHhCCCCEEEECCCCCCcch--HHHHhcCCCceeEeeecCCc------ccC-C---------CCceEEEECCCcC
Confidence 4667777889999998653321111 00122222377777775321 000 0 0111223688999
Q ss_pred cChhhhhhhhccceee-cccCCCCccCc-cccHHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEE
Q 016975 100 LSAATQEYANSIICNV-HGVNPKFLEIG-KKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDL 177 (379)
Q Consensus 100 ~S~~~~~~~~~~i~~i-~gvd~~~~~~~-~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i 177 (379)
+|+....+. +++.++ |.+.+....+. .....+...+. ++...++++|++.+ ||++.+++++..+.++.|+++|+|
T Consensus 335 ~s~~~~~~~-~~i~~ipn~~~~~~~~~~~~~~~~r~~~~~-~~~~~v~~~g~~~~-K~~~~li~a~~~l~~~~~~~~l~i 411 (568)
T 2vsy_A 335 PPALEPFYS-EHVLRLQGAFQPSDTSRVVAEPPSRTQCGL-PEQGVVLCCFNNSY-KLNPQSMARMLAVLREVPDSVLWL 411 (568)
T ss_dssp CTTTGGGCS-SEEEECSSCSCCCCTTCCCCCCCCTGGGTC-CTTSCEEEECCCGG-GCCHHHHHHHHHHHHHCTTCEEEE
T ss_pred CcccccCCc-ceeEcCCCcCCCCCCCCCCCCCCCccccCC-CCCCEEEEeCCccc-cCCHHHHHHHHHHHHhCCCcEEEE
Confidence 998776654 444444 43332211110 11111122222 23346779999999 999999999999988889999999
Q ss_pred Ec-CCcChHHHHHHHHhcCC---eeEEecCCCCHH--HHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEe-------cC
Q 016975 178 YG-NGEDFNQIQEAAEKLKI---VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVC-------AN 244 (379)
Q Consensus 178 ~G-~g~~~~~l~~~~~~~~l---~v~~~g~~~~~~--~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~-------t~ 244 (379)
+| +|+..+.+++.++++++ +|.|.|.+++.+ ++|+.+|+||+||.+ ++|++++|||+||+|||+ |+
T Consensus 412 ~G~~g~~~~~l~~~~~~~~l~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~-~~g~~~lEAma~G~Pvv~~~g~~~~s~ 490 (568)
T 2vsy_A 412 LSGPGEADARLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADLFLDTHPY-NAHTTASDALWTGCPVLTTPGETFAAR 490 (568)
T ss_dssp ECCSTTHHHHHHHHHHHTTCCGGGEEEECCCCHHHHHHHGGGCSEEECCSSS-CCSHHHHHHHHTTCCEEBCCCSSGGGS
T ss_pred ecCCHHHHHHHHHHHHHcCCChhHEEeeCCCCHHHHHHHHhcCCEEeeCCCC-CCcHHHHHHHhCCCCEEeccCCCchHH
Confidence 99 89889999999998876 488999998766 999999999999999 999999999999999999 98
Q ss_pred CC-------c-ccccccCCCEEEeCCHHHHHHHHHHHHhCCCC--CCcHHH------HhcCCHHHHHHHHHHHHhccc
Q 016975 245 HP-------S-NDFFKQFPNCRTYDDRNGFVEATLKALAEEPA--LPTEAQ------RHQLSWESATERFLQVAELDQ 306 (379)
Q Consensus 245 ~g-------~-~e~i~~~~~g~~~~~~~~l~~~i~~~l~~~~~--~~~~~~------~~~~sw~~~~~~~~~~~~~~~ 306 (379)
.| + .|++.+ |+++++++|.++++++.. .++.+. ...|+|+.+++++.++|+...
T Consensus 491 ~~~~~l~~~g~~e~v~~--------~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~y~~~~ 560 (568)
T 2vsy_A 491 VAGSLNHHLGLDEMNVA--------DDAAFVAKAVALASDPAALTALHARVDVLRRASGVFHMDGFADDFGALLQALA 560 (568)
T ss_dssp HHHHHHHHHTCGGGBCS--------SHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCChhhhcC--------CHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 87 5 454433 899999999999998754 444432 267999999999999998654
No 21
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=99.92 E-value=1.1e-25 Score=212.43 Aligned_cols=264 Identities=10% Similarity=0.032 Sum_probs=173.7
Q ss_pred cccccCCCCCCcEEEEcCCcchhhhhcccccccccC-cEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEE
Q 016975 20 DISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVI 98 (379)
Q Consensus 20 ~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~-~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 98 (379)
.+.+++.+.+||+||++.+....+. +....+..+ |++.+.|+... + .....+... ....+ ....+|.++
T Consensus 86 ~l~~~l~~~~pDvv~~~~~~~~~~~--~~~~~~~~~ip~v~~~~~~~~-~---~~~~~~~~~---~~~~~-~~~~~d~ii 155 (375)
T 3beo_A 86 GLDKVMKEAKPDIVLVHGDTTTTFI--ASLAAFYNQIPVGHVEAGLRT-W---DKYSPYPEE---MNRQL-TGVMADLHF 155 (375)
T ss_dssp HHHHHHHHHCCSEEEEETTSHHHHH--HHHHHHHTTCCEEEESCCCCC-S---CTTSSTTHH---HHHHH-HHHHCSEEE
T ss_pred HHHHHHHHhCCCEEEEeCCchHHHH--HHHHHHHHCCCEEEEeccccc-c---cccCCChhH---hhhhH-Hhhhhheee
Confidence 3666777889999999876433332 111222223 88866665310 0 000001111 11111 222369999
Q ss_pred EcChhhhhhhh------ccceee-cc-cCCCCccCcc--ccHHHhhcCCCCCcceEEEEEecccc-cCHHHHHHHHHHhH
Q 016975 99 RLSAATQEYAN------SIICNV-HG-VNPKFLEIGK--KKKEQQQNGTHAFAKGAYYIGKMVWS-KGYKELLELLDDHQ 167 (379)
Q Consensus 99 ~~S~~~~~~~~------~~i~~i-~g-vd~~~~~~~~--~~~~~~~~~~~~~~~~il~vgrl~~~-Kg~~~li~a~~~l~ 167 (379)
++|+..++... +++.++ || +|...+.+.. ....+... .+++.+++++||+.+. ||++.+++|+..+.
T Consensus 156 ~~s~~~~~~~~~~g~~~~~i~vi~n~~~d~~~~~~~~~~~~~~~~~~--~~~~~vl~~~gr~~~~~K~~~~li~a~~~l~ 233 (375)
T 3beo_A 156 SPTAKSATNLQKENKDESRIFITGNTAIDALKTTVKETYSHPVLEKL--GNNRLVLMTAHRRENLGEPMRNMFRAIKRLV 233 (375)
T ss_dssp ESSHHHHHHHHHTTCCGGGEEECCCHHHHHHHHHCCSSCCCHHHHTT--TTSEEEEEECCCGGGTTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCcccEEEECChhHhhhhhhhhhhhhHHHHHhc--cCCCeEEEEecccccchhHHHHHHHHHHHHH
Confidence 99988765432 234444 67 6754443321 11111111 2334567799999875 99999999999998
Q ss_pred hhcCCcEEEEEcCCcChHHHHHHHHhc-C--CeeEEecCCCCHH--HHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEe
Q 016975 168 KELAGLEVDLYGNGEDFNQIQEAAEKL-K--IVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVC 242 (379)
Q Consensus 168 ~~~~~~~l~i~G~g~~~~~l~~~~~~~-~--l~v~~~g~~~~~~--~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~ 242 (379)
++.|++++++ |.|++ ..+++.++++ + .++.|.|.+...+ ++|+.||++|.|| |.+++|||+||+|||+
T Consensus 234 ~~~~~~~~i~-~~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~v~~s-----g~~~lEA~a~G~Pvi~ 306 (375)
T 3beo_A 234 DKHEDVQVVY-PVHMN-PVVRETANDILGDYGRIHLIEPLDVIDFHNVAARSYLMLTDS-----GGVQEEAPSLGVPVLV 306 (375)
T ss_dssp HHCTTEEEEE-ECCSC-HHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHTCSEEEECC-----HHHHHHHHHHTCCEEE
T ss_pred hhCCCeEEEE-eCCCC-HHHHHHHHHHhhccCCEEEeCCCCHHHHHHHHHhCcEEEECC-----CChHHHHHhcCCCEEE
Confidence 8788998554 66765 2333333322 2 3789989887766 9999999999999 6779999999999999
Q ss_pred cCC-Cc-ccccccCCCEEEeC-CHHHHHHHHHHHHhCCCC--CCcHH---HHhcCCHHHHHHHHHHHHh
Q 016975 243 ANH-PS-NDFFKQFPNCRTYD-DRNGFVEATLKALAEEPA--LPTEA---QRHQLSWESATERFLQVAE 303 (379)
Q Consensus 243 t~~-g~-~e~i~~~~~g~~~~-~~~~l~~~i~~~l~~~~~--~~~~~---~~~~~sw~~~~~~~~~~~~ 303 (379)
++. |+ .|++.++ +|++++ |+++++++|.++++++.. .|+++ ....|+|+.+++++.+.++
T Consensus 307 ~~~~~~~~e~v~~g-~g~~v~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 374 (375)
T 3beo_A 307 LRDTTERPEGIEAG-TLKLAGTDEETIFSLADELLSDKEAHDKMSKASNPYGDGRASERIVEAILKHFN 374 (375)
T ss_dssp CSSCCSCHHHHHTT-SEEECCSCHHHHHHHHHHHHHCHHHHHHHCCCCCTTCCSCHHHHHHHHHHHHTT
T ss_pred ecCCCCCceeecCC-ceEEcCCCHHHHHHHHHHHHhChHhHhhhhhcCCCCCCCcHHHHHHHHHHHHhh
Confidence 975 55 7777776 999996 999999999999997643 23222 2257999999999988764
No 22
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=99.91 E-value=7.7e-24 Score=207.32 Aligned_cols=98 Identities=14% Similarity=0.155 Sum_probs=77.1
Q ss_pred HHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc-ccccccC-------CCEEEeC-----CHHHHHHHHHHHHh
Q 016975 209 LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQF-------PNCRTYD-----DRNGFVEATLKALA 275 (379)
Q Consensus 209 ~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-~e~i~~~-------~~g~~~~-----~~~~l~~~i~~~l~ 275 (379)
++|+.||+||+||.+|+||++++||||||+|||+|+.|+ .+.+.++ .+|+++. |+++++++|.+++.
T Consensus 514 ~~~~~advfV~PS~~EgfGl~~LEAmA~G~PvI~s~~gG~~d~V~dg~~~~~~~~tG~lV~~rd~~d~ee~aeaLa~aL~ 593 (725)
T 3nb0_A 514 EFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSITTNVSGFGSYMEDLIETNQAKDYGIYIVDRRFKAPDESVEQLVDYME 593 (725)
T ss_dssp HHHHHCSEEECCCSSBSSCHHHHHHHHTTCCEEEETTBHHHHHHHTTSCHHHHHHTTEEEECCSSSCHHHHHHHHHHHHH
T ss_pred HHHhhceEEEeccccCCCCHHHHHHHHcCCCEEEeCCCChhhhhhccccccCCCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999965 7877765 3687662 66666666665553
Q ss_pred ----CCCC---CCcHHH---HhcCCHHHHHHHHHHHHhccc
Q 016975 276 ----EEPA---LPTEAQ---RHQLSWESATERFLQVAELDQ 306 (379)
Q Consensus 276 ----~~~~---~~~~~~---~~~~sw~~~~~~~~~~~~~~~ 306 (379)
.++. .++.++ .+.|+|+.++++|+++|+.+.
T Consensus 594 ~f~~~d~~~r~~mr~~ar~~A~~FSWe~iA~~Yl~~Ye~aL 634 (725)
T 3nb0_A 594 EFVKKTRRQRINQRNATEALSDLLDWKRMGLEYVKARQLAL 634 (725)
T ss_dssp HHHTCCHHHHHHHHHHHHHGGGGGBHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 2322 333332 278999999999999999654
No 23
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=99.91 E-value=2.6e-24 Score=181.86 Aligned_cols=138 Identities=14% Similarity=0.103 Sum_probs=124.0
Q ss_pred CCCcceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHH--hcCC--eeEEecCCCCHH--HHH
Q 016975 138 HAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAE--KLKI--VVRVYPGRDHAD--LIF 211 (379)
Q Consensus 138 ~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~--~~~l--~v~~~g~~~~~~--~~~ 211 (379)
..++++|+|+|++.+.||++.+++++..+ ++++|+|+|++++.+.+++.++ +.++ ++.++|.+++.+ .+|
T Consensus 20 ~~~~~~i~~~G~~~~~Kg~~~li~a~~~l----~~~~l~i~G~~~~~~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~ 95 (177)
T 2f9f_A 20 KCYGDFWLSVNRIYPEKRIELQLEVFKKL----QDEKLYIVGWFSKGDHAERYARKIMKIAPDNVKFLGSVSEEELIDLY 95 (177)
T ss_dssp CCCCSCEEEECCSSGGGTHHHHHHHHHHC----TTSCEEEEBCCCTTSTHHHHHHHHHHHSCTTEEEEESCCHHHHHHHH
T ss_pred CCCCCEEEEEeccccccCHHHHHHHHHhC----CCcEEEEEecCccHHHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHH
Confidence 44577899999999999999999999886 6899999999998878888877 5444 889999999977 999
Q ss_pred hhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc-ccccccCCCEEEeC-CHHHHHHHHHHHHhCCCC
Q 016975 212 HDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD-DRNGFVEATLKALAEEPA 279 (379)
Q Consensus 212 ~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-~e~i~~~~~g~~~~-~~~~l~~~i~~~l~~~~~ 279 (379)
+.||++|+||..|++|++++|||+||+|||+++.|+ .+++.++.+|++++ |+++++++|.++++++..
T Consensus 96 ~~adi~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~~~d~~~l~~~i~~l~~~~~~ 165 (177)
T 2f9f_A 96 SRCKGLLCTAKDEDFGLTPIEAMASGKPVIAVNEGGFKETVINEKTGYLVNADVNEIIDAMKKVSKNPDK 165 (177)
T ss_dssp HHCSEEEECCSSCCSCHHHHHHHHTTCCEEEESSHHHHHHCCBTTTEEEECSCHHHHHHHHHHHHHCTTT
T ss_pred HhCCEEEeCCCcCCCChHHHHHHHcCCcEEEeCCCCHHHHhcCCCccEEeCCCHHHHHHHHHHHHhCHHH
Confidence 999999999999999999999999999999999965 88899889998875 999999999999998763
No 24
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.91 E-value=1.8e-25 Score=211.88 Aligned_cols=270 Identities=11% Similarity=-0.007 Sum_probs=176.2
Q ss_pred ccccccCCCCCCcEEEEcCCcchhhhhcccccccccC-cEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceE
Q 016975 19 GDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKV 97 (379)
Q Consensus 19 ~~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~-~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 97 (379)
..+.+++++.+||+||++.+....+.. ....+..+ |++.+.|+... +. ....+... ..+......+|.+
T Consensus 76 ~~l~~~l~~~~pDvv~~~~~~~~~~~~--~~~a~~~~ip~v~~~~~~~~-~~---~~~~~~~~----~~~~~~~~~~d~i 145 (384)
T 1vgv_A 76 EGLKPILAEFKPDVVLVHGDTTTTLAT--SLAAFYQRIPVGHVEAGLRT-GD---LYSPWPEE----ANRTLTGHLAMYH 145 (384)
T ss_dssp HHHHHHHHHHCCSEEEEETTCHHHHHH--HHHHHTTTCCEEEESCCCCC-SC---TTSSTTHH----HHHHHHHTTCSEE
T ss_pred HHHHHHHHHhCCCEEEEeCCchHHHHH--HHHHHHHCCCEEEEeccccc-cc---ccCCCchH----hhHHHHHhhccEE
Confidence 356677778899999998753333321 11222223 88888776421 00 00001011 1112122337999
Q ss_pred EEcChhhhhhhh------ccceee-ccc-CCCCccCccc-------cHHHhhcC-C-CCCcceEEEEEecccc-cCHHHH
Q 016975 98 IRLSAATQEYAN------SIICNV-HGV-NPKFLEIGKK-------KKEQQQNG-T-HAFAKGAYYIGKMVWS-KGYKEL 159 (379)
Q Consensus 98 i~~S~~~~~~~~------~~i~~i-~gv-d~~~~~~~~~-------~~~~~~~~-~-~~~~~~il~vgrl~~~-Kg~~~l 159 (379)
+++|+..++... .++.++ ||+ |...+.+... ...+...+ . .+.+.+++++||+.+. ||++.+
T Consensus 146 i~~s~~~~~~l~~~g~~~~~i~vi~n~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~gr~~~~~kg~~~l 225 (384)
T 1vgv_A 146 FSPTETSRQNLLRENVADSRIFITGNTVIDALLWVRDQVMSSDKLRSELAANYPFIDPDKKMILVTGHRRESFGRGFEEI 225 (384)
T ss_dssp EESSHHHHHHHHHTTCCGGGEEECCCHHHHHHHHHHHHTTTCHHHHHHHHTTCTTCCTTSEEEEEECCCBSSCCHHHHHH
T ss_pred EcCcHHHHHHHHHcCCChhhEEEeCChHHHHHHhhhhccccchhhhHHHHHhccccCCCCCEEEEEeCCccccchHHHHH
Confidence 999988765432 233333 563 3211211100 01111222 2 2234568899999875 999999
Q ss_pred HHHHHHhHhhcCCcEEEEE-cCCc-ChHHHHHHHHhcCCeeEEecCCCCHH--HHHhhcCEEEecCCCCcchhHHHHHHH
Q 016975 160 LELLDDHQKELAGLEVDLY-GNGE-DFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALA 235 (379)
Q Consensus 160 i~a~~~l~~~~~~~~l~i~-G~g~-~~~~l~~~~~~~~l~v~~~g~~~~~~--~~~~~~dv~v~ps~~E~~~~~~~EAma 235 (379)
++++..+.++.|++++++. |+++ ..+.+++.+... .++.|.|.+...+ ++|+.||++|.|| |.+++|||+
T Consensus 226 i~a~~~l~~~~~~~~l~i~~g~~~~~~~~l~~~~~~~-~~v~~~g~~~~~~~~~~~~~ad~~v~~S-----g~~~lEA~a 299 (384)
T 1vgv_A 226 CHALADIATTHQDIQIVYPVHLNPNVREPVNRILGHV-KNVILIDPQEYLPFVWLMNHAWLILTDS-----GGIQEEAPS 299 (384)
T ss_dssp HHHHHHHHHHCTTEEEEEECCBCHHHHHHHHHHHTTC-TTEEEECCCCHHHHHHHHHHCSEEEESS-----STGGGTGGG
T ss_pred HHHHHHHHhhCCCeEEEEEcCCCHHHHHHHHHHhhcC-CCEEEeCCCCHHHHHHHHHhCcEEEECC-----cchHHHHHH
Confidence 9999999888889999885 5444 345555554332 3789988877656 9999999999999 445899999
Q ss_pred cCCeEEecCC-Cc-ccccccCCCEEEeC-CHHHHHHHHHHHHhCCCC--CCcHH---HHhcCCHHHHHHHHHHHHhcc
Q 016975 236 MGKIVVCANH-PS-NDFFKQFPNCRTYD-DRNGFVEATLKALAEEPA--LPTEA---QRHQLSWESATERFLQVAELD 305 (379)
Q Consensus 236 ~G~PVI~t~~-g~-~e~i~~~~~g~~~~-~~~~l~~~i~~~l~~~~~--~~~~~---~~~~~sw~~~~~~~~~~~~~~ 305 (379)
||+|||+++. |+ .|++.++ +|++++ |+++++++|.++++++.. +|+++ ....++|+.+++.+.+.|+..
T Consensus 300 ~G~PvI~~~~~~~~~e~v~~g-~g~lv~~d~~~la~~i~~ll~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 376 (384)
T 1vgv_A 300 LGKPVLVMRDTTERPEAVTAG-TVRLVGTDKQRIVEEVTRLLKDENEYQAMSRAHNPYGDGQACSRILEALKNNRISL 376 (384)
T ss_dssp GTCCEEEESSCCSCHHHHHHT-SEEEECSSHHHHHHHHHHHHHCHHHHHHHHSSCCTTCCSCHHHHHHHHHHHTCCCC
T ss_pred cCCCEEEccCCCCcchhhhCC-ceEEeCCCHHHHHHHHHHHHhChHHHhhhhhccCCCcCCCHHHHHHHHHHHHHHhh
Confidence 9999999987 66 7777777 999997 999999999999997643 22222 226799999999999988753
No 25
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=99.91 E-value=4e-24 Score=201.10 Aligned_cols=249 Identities=12% Similarity=0.005 Sum_probs=174.6
Q ss_pred cccccCCCCCCcEEEEcCCcchhhhhccccccccc-CcEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEE
Q 016975 20 DISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKF-RYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVI 98 (379)
Q Consensus 20 ~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~-~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 98 (379)
.+.+++.+.+||+||++.+....... ...+.. .|+|...|+.++.. ..+++ ...+|.++
T Consensus 87 ~l~~~l~~~~pDvv~~~~~~~~~~~~---~~~~~~~~p~v~~~~~~~~~~----------------~~~~~-~~~~d~v~ 146 (364)
T 1f0k_A 87 QARAIMKAYKPDVVLGMGGYVSGPGG---LAAWSLGIPVVLHEQNGIAGL----------------TNKWL-AKIATKVM 146 (364)
T ss_dssp HHHHHHHHHCCSEEEECSSTTHHHHH---HHHHHTTCCEEEEECSSSCCH----------------HHHHH-TTTCSEEE
T ss_pred HHHHHHHhcCCCEEEEeCCcCchHHH---HHHHHcCCCEEEEecCCCCcH----------------HHHHH-HHhCCEEE
Confidence 45566777899999998754221111 122222 38888888754211 11221 12369999
Q ss_pred EcChhhhhhhhccceee-cccCCCCccCccccHHHhhcCCCCCcceEE-EEEecccccCHHHHHHHHHHhHhhcCCcE-E
Q 016975 99 RLSAATQEYANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAY-YIGKMVWSKGYKELLELLDDHQKELAGLE-V 175 (379)
Q Consensus 99 ~~S~~~~~~~~~~i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il-~vgrl~~~Kg~~~li~a~~~l~~~~~~~~-l 175 (379)
+.|+.. +. ++..+ ||++...+.+... +......++++.++ +.|++.+.||.+.+++++..+.+ +++ +
T Consensus 147 ~~~~~~--~~--~~~~i~n~v~~~~~~~~~~---~~~~~~~~~~~~il~~~g~~~~~k~~~~li~a~~~l~~---~~~~l 216 (364)
T 1f0k_A 147 QAFPGA--FP--NAEVVGNPVRTDVLALPLP---QQRLAGREGPVRVLVVGGSQGARILNQTMPQVAAKLGD---SVTIW 216 (364)
T ss_dssp ESSTTS--SS--SCEECCCCCCHHHHTSCCH---HHHHTTCCSSEEEEEECTTTCCHHHHHHHHHHHHHHGG---GEEEE
T ss_pred ecChhh--cC--CceEeCCccchhhcccchh---hhhcccCCCCcEEEEEcCchHhHHHHHHHHHHHHHhcC---CcEEE
Confidence 988654 22 34444 7888766544221 12222333344444 55699999999999999998854 577 5
Q ss_pred EEEcCCcChHHHHHHHHhcCC-eeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc-cc----
Q 016975 176 DLYGNGEDFNQIQEAAEKLKI-VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-ND---- 249 (379)
Q Consensus 176 ~i~G~g~~~~~l~~~~~~~~l-~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-~e---- 249 (379)
+++|+|+ .+++++.++++++ ++.|.|.+++..++|+.||++|+||. |++++|||+||+|||+++.++ .+
T Consensus 217 ~i~G~~~-~~~l~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~sg----~~~~~EAma~G~Pvi~~~~~g~~~~q~~ 291 (364)
T 1f0k_A 217 HQSGKGS-QQSVEQAYAEAGQPQHKVTEFIDDMAAAYAWADVVVCRSG----ALTVSEIAAAGLPALFVPFQHKDRQQYW 291 (364)
T ss_dssp EECCTTC-HHHHHHHHHHTTCTTSEEESCCSCHHHHHHHCSEEEECCC----HHHHHHHHHHTCCEEECCCCCTTCHHHH
T ss_pred EEcCCch-HHHHHHHHhhcCCCceEEecchhhHHHHHHhCCEEEECCc----hHHHHHHHHhCCCEEEeeCCCCchhHHH
Confidence 6789888 5788888888775 89999999666699999999999983 999999999999999999964 21
Q ss_pred ---ccccCCCEEEeC--C--HHHHHHHHHHHHhCCCC--CCcHHHH---hcCCHHHHHHHHHHHHhcc
Q 016975 250 ---FFKQFPNCRTYD--D--RNGFVEATLKALAEEPA--LPTEAQR---HQLSWESATERFLQVAELD 305 (379)
Q Consensus 250 ---~i~~~~~g~~~~--~--~~~l~~~i~~~l~~~~~--~~~~~~~---~~~sw~~~~~~~~~~~~~~ 305 (379)
.+.+...|++++ | +++++++|.++ ++.. .++++++ +.|+|+.++++++++|+..
T Consensus 292 ~~~~~~~~g~g~~~~~~d~~~~~la~~i~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 357 (364)
T 1f0k_A 292 NALPLEKAGAAKIIEQPQLSVDAVANTLAGW--SRETLLTMAERARAASIPDATERVANEVSRVARAL 357 (364)
T ss_dssp HHHHHHHTTSEEECCGGGCCHHHHHHHHHTC--CHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCcEEEeccccCCHHHHHHHHHhc--CHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHH
Confidence 344444699988 5 89999999987 4433 4444433 6899999999999999953
No 26
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=99.90 E-value=5.6e-23 Score=197.62 Aligned_cols=263 Identities=13% Similarity=0.067 Sum_probs=177.9
Q ss_pred CCCcEEEEcCCcchhhhhccccccccc--CcEEEEeccChHHHHHHhhcch-HHHHHHHHHHHHHHHHhcceEEEcChh-
Q 016975 28 EVADIAVLEEPEHLTWFHHGKRWKTKF--RYVVGIVHTNYLEYVKREKNGR-LQAFLLKYANSWLVDIYCHKVIRLSAA- 103 (379)
Q Consensus 28 ~~~DvV~~~~p~~~~~~~~~~~~~~~~--~~vv~~~h~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~vi~~S~~- 103 (379)
..-|+|++|+...+.... ....+. .++..++|..++........+. +++.+.+.+.. ||.|..-+..
T Consensus 148 ~~~D~VwVhDYhL~llp~---~lR~~~~~~~igfFlHiPfPs~e~f~~Lp~~~r~ell~gll~------~DligF~t~~y 218 (496)
T 3t5t_A 148 SADPVYLVHDYQLVGVPA---LLREQRPDAPILLFVHIPWPSADYWRILPKEIRTGILHGMLP------ATTIGFFADRW 218 (496)
T ss_dssp CSSCEEEEESGGGTTHHH---HHHHHCTTSCEEEECCSCCCCHHHHTTSCHHHHHHHHHHHTT------SSEEEESSHHH
T ss_pred CCCCEEEEeCccHhHHHH---HHHhhCCCCeEEEEEcCCCCCHHHHhhCcHhHHHHHHHHHHh------CCEEEEecHHH
Confidence 357899999976664442 222222 3889999998765543223332 22222222211 4777777743
Q ss_pred hhhh-------h-h----------------ccceee-cccCCCCccCccc---cHHHhhcCCCCCcceEEEEEecccccC
Q 016975 104 TQEY-------A-N----------------SIICNV-HGVNPKFLEIGKK---KKEQQQNGTHAFAKGAYYIGKMVWSKG 155 (379)
Q Consensus 104 ~~~~-------~-~----------------~~i~~i-~gvd~~~~~~~~~---~~~~~~~~~~~~~~~il~vgrl~~~Kg 155 (379)
...+ . . .++..+ +|||++.|.+... ...+...+ ++++|+++||+++.||
T Consensus 219 ~~~Fl~~~~r~l~g~~~~~~~~~v~~~gr~v~v~viP~GID~~~f~~~~~~~~~~lr~~~~---~~~lIl~VgRLd~~KG 295 (496)
T 3t5t_A 219 CRNFLESVADLLPDARIDREAMTVEWRGHRTRLRTMPLGYSPLTLDGRNPQLPEGIEEWAD---GHRLVVHSGRTDPIKN 295 (496)
T ss_dssp HHHHHHHHHHHCTTCEEETTTTEEEETTEEEEEEECCCCBCGGGC----CCCCTTHHHHHT---TSEEEEEEEESSGGGC
T ss_pred HHHHHHHHHHHhcCCcccccCCeEEECCEEEEEEEeccEeCHHHhchhhHHHHHHHHHHhC---CceEEEEcccCccccC
Confidence 2221 1 0 011222 7999988865432 11111222 4779999999999999
Q ss_pred HHHHHHHHHHhHhhcCC---cEEEEEc-----CCcChHH----HHHHHHhcCC-----eeEEecCCCCHH--HHHhhcCE
Q 016975 156 YKELLELLDDHQKELAG---LEVDLYG-----NGEDFNQ----IQEAAEKLKI-----VVRVYPGRDHAD--LIFHDYKV 216 (379)
Q Consensus 156 ~~~li~a~~~l~~~~~~---~~l~i~G-----~g~~~~~----l~~~~~~~~l-----~v~~~g~~~~~~--~~~~~~dv 216 (379)
+..+++|+ ++.+++|+ +.|+++| ++++..+ +++++.+.+. .|.|+|.++..+ .+|+.||+
T Consensus 296 i~~lL~Af-~ll~~~P~~~~v~Lv~Vg~psr~~~~~y~~l~~~l~~lv~~in~~~g~~~V~f~g~v~~~el~aly~~ADv 374 (496)
T 3t5t_A 296 AERAVRAF-VLAARGGGLEKTRMLVRMNPNRLYVPANADYVHRVETAVAEANAELGSDTVRIDNDNDVNHTIACFRRADL 374 (496)
T ss_dssp HHHHHHHH-HHHHHTSSCTTEEEEEEEECCCTTSHHHHHHHHHHHHHHHHHHHHHCTTSEEEEECCCHHHHHHHHHHCSE
T ss_pred HHHHHHHH-HHHHhCcccceEEEEEEECCCCCCchHHHHHHHHHHHHHHHhccccCCcCEEEeCCCCHHHHHHHHHhccE
Confidence 99999999 88887776 5688776 3333333 4444444332 588889888877 99999999
Q ss_pred EEecCCCCcchhHHHHHHHcC---CeEEecCC-CcccccccCCCEEEeC--CHHHHHHHHHHHHhCCCC---CCcH---H
Q 016975 217 FLNPSTTDVVCTTTAEALAMG---KIVVCANH-PSNDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA---LPTE---A 284 (379)
Q Consensus 217 ~v~ps~~E~~~~~~~EAma~G---~PVI~t~~-g~~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~~---~~~~---~ 284 (379)
||+||..||||++.+|||||| .|+|.|+. |+.+.+.+ +|++++ |+++++++|.++++++.. .+.+ +
T Consensus 375 ~vv~SlrEGfgLv~~EamA~~~~~g~lVlSe~aGa~~~l~~--~allVnP~D~~~lA~AI~~aL~m~~~er~~r~~~~~~ 452 (496)
T 3t5t_A 375 LIFNSTVDGQNLSTFEAPLVNERDADVILSETCGAAEVLGE--YCRSVNPFDLVEQAEAISAALAAGPRQRAEAAARRRD 452 (496)
T ss_dssp EEECCSSBSCCSHHHHHHHHCSSCCEEEEETTBTTHHHHGG--GSEEECTTBHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred EEECcccccCChhHHHHHHhCCCCCCEEEeCCCCCHHHhCC--CEEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999997 89999998 66777743 578888 999999999999998754 1111 2
Q ss_pred HHhcCCHHHHHHHHHHHHhcc
Q 016975 285 QRHQLSWESATERFLQVAELD 305 (379)
Q Consensus 285 ~~~~~sw~~~~~~~~~~~~~~ 305 (379)
....+++..-++.+++.....
T Consensus 453 ~V~~~d~~~W~~~fl~~L~~~ 473 (496)
T 3t5t_A 453 AARPWTLEAWVQAQLDGLAAD 473 (496)
T ss_dssp HHTTCBHHHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHhhc
Confidence 227888888888888877754
No 27
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=99.86 E-value=1.8e-21 Score=183.99 Aligned_cols=231 Identities=10% Similarity=-0.019 Sum_probs=151.2
Q ss_pred cccccCCCCCCcEEEEcCCcch-hhhhcccccccccCcEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEE
Q 016975 20 DISEVIPDEVADIAVLEEPEHL-TWFHHGKRWKTKFRYVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVI 98 (379)
Q Consensus 20 ~l~~~l~~~~~DvV~~~~p~~~-~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 98 (379)
.+.+++++.+||+||+...... .+.. ... + |++...+... .. . ...... ..+|.++
T Consensus 102 ~l~~~l~~~~pDiv~~~~~~~~~~~~~---~~~-~--p~~~~~~~~~-------~~----~----~~~~~~--~~~d~ii 158 (374)
T 2xci_A 102 SVKRFEELSKPKALIVVEREFWPSLII---FTK-V--PKILVNAYAK-------GS----L----IEKILS--KKFDLII 158 (374)
T ss_dssp HHHHHHHHHCCSEEEEESCCCCHHHHH---HCC-S--CEEEEEECCC-------CC----H----HHHHHH--TTCSEEE
T ss_pred HHHHHHHHhCCCEEEEECccCcHHHHH---HHh-C--CEEEEEeecC-------ch----H----HHHHHH--HhCCEEE
Confidence 4667777889999998644322 2221 111 1 5554433211 00 0 111111 1259999
Q ss_pred EcChhhhhhhhc-c---ceee-cccCCCCccCccccHHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhhcCCc
Q 016975 99 RLSAATQEYANS-I---ICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGL 173 (379)
Q Consensus 99 ~~S~~~~~~~~~-~---i~~i-~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~ 173 (379)
++|+..++...+ + +.++ |+. |.+.... .. .. ..+++++.|+ ..||++.+++|+..+.++.|++
T Consensus 159 ~~S~~~~~~l~~~g~~ki~vi~n~~----f~~~~~~---~~--~l-~~~vi~~~~~--~~k~~~~ll~A~~~l~~~~p~~ 226 (374)
T 2xci_A 159 MRTQEDVEKFKTFGAKRVFSCGNLK----FICQKGK---GI--KL-KGEFIVAGSI--HTGEVEIILKAFKEIKKTYSSL 226 (374)
T ss_dssp ESCHHHHHHHHTTTCCSEEECCCGG----GCCCCCS---CC--CC-SSCEEEEEEE--CGGGHHHHHHHHHHHHTTCTTC
T ss_pred ECCHHHHHHHHHcCCCeEEEcCCCc----cCCCcCh---hh--hh-cCCEEEEEeC--CCchHHHHHHHHHHHHhhCCCc
Confidence 999887755432 2 3233 331 2111110 00 01 1245666665 5789999999999999888999
Q ss_pred EEEEEcCCcCh-HHHHHHHHhcCCe----------eEEecCCCCHHHHHhhcCEEEecCCC-CcchhHHHHHHHcCCeEE
Q 016975 174 EVDLYGNGEDF-NQIQEAAEKLKIV----------VRVYPGRDHADLIFHDYKVFLNPSTT-DVVCTTTAEALAMGKIVV 241 (379)
Q Consensus 174 ~l~i~G~g~~~-~~l~~~~~~~~l~----------v~~~g~~~~~~~~~~~~dv~v~ps~~-E~~~~~~~EAma~G~PVI 241 (379)
+|+|+|+|++. ++++++++++++. +.+.|...+...+|+.||++++||.. |++|++++||||||+|||
T Consensus 227 ~lvivG~g~~~~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~~~dl~~~y~~aDv~vl~ss~~e~gg~~~lEAmA~G~PVI 306 (374)
T 2xci_A 227 KLILVPRHIENAKIFEKKARDFGFKTSFFENLEGDVILVDRFGILKELYPVGKIAIVGGTFVNIGGHNLLEPTCWGIPVI 306 (374)
T ss_dssp EEEEEESSGGGHHHHHHHHHHTTCCEEETTCCCSSEEECCSSSCHHHHGGGEEEEEECSSSSSSCCCCCHHHHTTTCCEE
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCceEEecCCCCcEEEECCHHHHHHHHHhCCEEEECCcccCCCCcCHHHHHHhCCCEE
Confidence 99999999986 5899999888764 44556566666999999998887654 778999999999999999
Q ss_pred ec-CCCc-ccccccC-CCE--EEeCCHHHHHHHHHHHHhCCCC--CCcHHHH
Q 016975 242 CA-NHPS-NDFFKQF-PNC--RTYDDRNGFVEATLKALAEEPA--LPTEAQR 286 (379)
Q Consensus 242 ~t-~~g~-~e~i~~~-~~g--~~~~~~~~l~~~i~~~l~~~~~--~~~~~~~ 286 (379)
++ +.++ .|.+.+. .+| +.+.|+++|+++|.+++++ .. +|+++++
T Consensus 307 ~~~~~~~~~e~~~~~~~~G~l~~~~d~~~La~ai~~ll~d-~~r~~mg~~ar 357 (374)
T 2xci_A 307 YGPYTHKVNDLKEFLEKEGAGFEVKNETELVTKLTELLSV-KKEIKVEEKSR 357 (374)
T ss_dssp ECSCCTTSHHHHHHHHHTTCEEECCSHHHHHHHHHHHHHS-CCCCCHHHHHH
T ss_pred ECCCccChHHHHHHHHHCCCEEEeCCHHHHHHHHHHHHhH-HHHHHHHHHHH
Confidence 86 5554 6665432 234 3344999999999999998 65 5666554
No 28
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.85 E-value=3.8e-22 Score=188.52 Aligned_cols=264 Identities=9% Similarity=-0.054 Sum_probs=164.0
Q ss_pred cccccCCCCCCcEEEEcCCcchhhhhcccccccccC-cEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEE
Q 016975 20 DISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVI 98 (379)
Q Consensus 20 ~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~-~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 98 (379)
.+.+++++.+||+||++.+....+.. ....+..+ |++. +|+....+.. ....... ....+ ....+|.++
T Consensus 82 ~l~~~l~~~~pDvv~~~~~~~~~~~~--~~~a~~~~ip~v~-~~~~~~~~~~--~~~~~~~----~~~~~-~~~~~~~~~ 151 (376)
T 1v4v_A 82 QAARALKEMGADYVLVHGDTLTTFAV--AWAAFLEGIPVGH-VEAGLRSGNL--KEPFPEE----ANRRL-TDVLTDLDF 151 (376)
T ss_dssp HHHHHHHHTTCSEEEEESSCHHHHHH--HHHHHHTTCCEEE-ETCCCCCSCT--TSSTTHH----HHHHH-HHHHCSEEE
T ss_pred HHHHHHHHcCCCEEEEeCChHHHHHH--HHHHHHhCCCEEE-EeCCCccccc--cCCCchH----HHHHH-HHHHhceee
Confidence 46677778899999998654433331 12222223 7764 4432211100 0000111 11222 223369999
Q ss_pred EcChhhhhhhhc------cceee-cc-cCCCCccCccccHHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhhc
Q 016975 99 RLSAATQEYANS------IICNV-HG-VNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKEL 170 (379)
Q Consensus 99 ~~S~~~~~~~~~------~i~~i-~g-vd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~ 170 (379)
++|+..++...+ ++..+ |+ +|...+.+. .. ..+.. ..+.+.+++++||+...||++.+++|+..+.++.
T Consensus 152 ~~s~~~~~~l~~~g~~~~ki~vi~n~~~d~~~~~~~-~~-~~~~~-~~~~~~vl~~~gr~~~~k~~~~ll~a~~~l~~~~ 228 (376)
T 1v4v_A 152 APTPLAKANLLKEGKREEGILVTGQTGVDAVLLAAK-LG-RLPEG-LPEGPYVTVTMHRRENWPLLSDLAQALKRVAEAF 228 (376)
T ss_dssp ESSHHHHHHHHTTTCCGGGEEECCCHHHHHHHHHHH-HC-CCCTT-CCSSCEEEECCCCGGGGGGHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHcCCCcceEEEECCchHHHHhhhhh-hh-HHHHh-cCCCCEEEEEeCcccchHHHHHHHHHHHHHHhhC
Confidence 999886654422 23333 43 332111110 00 00011 1123446678999988889999999999998878
Q ss_pred CCcEEEEE-cCCc-ChHHHHHHHHhcCCeeEEecCCCCHH--HHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCC-
Q 016975 171 AGLEVDLY-GNGE-DFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH- 245 (379)
Q Consensus 171 ~~~~l~i~-G~g~-~~~~l~~~~~~~~l~v~~~g~~~~~~--~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~- 245 (379)
|+++++++ |+++ ..+.+++.+.. ..++.|.|.+...+ ++|+.||+||.|| + |+ ++||||||+|||+++.
T Consensus 229 ~~~~lv~~~g~~~~~~~~l~~~~~~-~~~v~~~g~~g~~~~~~~~~~ad~~v~~S--~--g~-~lEA~a~G~PvI~~~~~ 302 (376)
T 1v4v_A 229 PHLTFVYPVHLNPVVREAVFPVLKG-VRNFVLLDPLEYGSMAALMRASLLLVTDS--G--GL-QEEGAALGVPVVVLRNV 302 (376)
T ss_dssp TTSEEEEECCSCHHHHHHHHHHHTT-CTTEEEECCCCHHHHHHHHHTEEEEEESC--H--HH-HHHHHHTTCCEEECSSS
T ss_pred CCeEEEEECCCCHHHHHHHHHHhcc-CCCEEEECCCCHHHHHHHHHhCcEEEECC--c--CH-HHHHHHcCCCEEeccCC
Confidence 89998886 7665 35666666543 23789998776655 9999999999999 3 44 8899999999999854
Q ss_pred Cc-ccccccCCCEEEeC-CHHHHHHHHHHHHhCCCC--CCcHHHHhcCCHHHHHHHHHHHHhc
Q 016975 246 PS-NDFFKQFPNCRTYD-DRNGFVEATLKALAEEPA--LPTEAQRHQLSWESATERFLQVAEL 304 (379)
Q Consensus 246 g~-~e~i~~~~~g~~~~-~~~~l~~~i~~~l~~~~~--~~~~~~~~~~sw~~~~~~~~~~~~~ 304 (379)
|+ .+.+.+ .+|++++ |+++++++|.++++++.. .|++ ....|.|...++++.+.+..
T Consensus 303 ~~~~~~~~~-g~g~lv~~d~~~la~~i~~ll~d~~~~~~~~~-~~~~~~~~~~~~~i~~~i~~ 363 (376)
T 1v4v_A 303 TERPEGLKA-GILKLAGTDPEGVYRVVKGLLENPEELSRMRK-AKNPYGDGKAGLMVARGVAW 363 (376)
T ss_dssp CSCHHHHHH-TSEEECCSCHHHHHHHHHHHHTCHHHHHHHHH-SCCSSCCSCHHHHHHHHHHH
T ss_pred CcchhhhcC-CceEECCCCHHHHHHHHHHHHhChHhhhhhcc-cCCCCCCChHHHHHHHHHHH
Confidence 65 565544 4899995 999999999999987643 3332 22456666666666666653
No 29
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=99.78 E-value=2.3e-19 Score=166.37 Aligned_cols=227 Identities=9% Similarity=-0.043 Sum_probs=145.4
Q ss_pred CCCcEEEEcCCcchh--hhhcccccccccC-cEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEEEcChhh
Q 016975 28 EVADIAVLEEPEHLT--WFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVIRLSAAT 104 (379)
Q Consensus 28 ~~~DvV~~~~p~~~~--~~~~~~~~~~~~~-~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~S~~~ 104 (379)
.++|+|+++.|...+ +......+.++.+ |+|..+|+.++.... .+. .... ..++ ....||.||++|+.+
T Consensus 73 ~~~DvIi~q~P~~~~~~~~~~~~~~lk~~~~k~i~~ihDl~pl~~~--~~~----~~~~-~E~~-~y~~aD~Ii~~S~~~ 144 (339)
T 3rhz_A 73 RHGDVVIFQTPTWNTTEFDEKLMNKLKLYDIKIVLFIHDVVPLMFS--GNF----YLMD-RTIA-YYNKADVVVAPSQKM 144 (339)
T ss_dssp CTTCEEEEEECCSSCHHHHHHHHHHHTTSSCEEEEEESCCHHHHCG--GGG----GGHH-HHHH-HHTTCSEEEESCHHH
T ss_pred CCCCEEEEeCCCcchhhHHHHHHHHHHhcCCEEEEEecccHHhhCc--cch----hhHH-HHHH-HHHHCCEEEECCHHH
Confidence 569999999887532 1111123333334 999999998764432 111 1111 2222 122279999999988
Q ss_pred hhhhhc-cceeecccCCCCccCccccHHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcC
Q 016975 105 QEYANS-IICNVHGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED 183 (379)
Q Consensus 105 ~~~~~~-~i~~i~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~ 183 (379)
.+...+ ++....-++...|....... .....+++.|+|+|++.....+ ..+ .++++|+|+|+|++
T Consensus 145 ~~~l~~~G~~~~ki~~~~~~~~~~~~~----~~~~~~~~~i~yaG~l~k~~~L-------~~l---~~~~~f~ivG~G~~ 210 (339)
T 3rhz_A 145 IDKLRDFGMNVSKTVVQGMWDHPTQAP----MFPAGLKREIHFPGNPERFSFV-------KEW---KYDIPLKVYTWQNV 210 (339)
T ss_dssp HHHHHHTTCCCSEEEECCSCCCCCCCC----CCCCEEEEEEEECSCTTTCGGG-------GGC---CCSSCEEEEESCCC
T ss_pred HHHHHHcCCCcCceeecCCCCccCccc----ccccCCCcEEEEeCCcchhhHH-------HhC---CCCCeEEEEeCCcc
Confidence 866543 32211111111111110000 0122245689999999853222 222 37899999999998
Q ss_pred hHHHHHHHHhcCCeeEEecCCCCHH--HHHhhcCEEEecCCC-------CcchhHHHHHHHcCCeEEecCCCc-cccccc
Q 016975 184 FNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPSTT-------DVVCTTTAEALAMGKIVVCANHPS-NDFFKQ 253 (379)
Q Consensus 184 ~~~l~~~~~~~~l~v~~~g~~~~~~--~~~~~~dv~v~ps~~-------E~~~~~~~EAma~G~PVI~t~~g~-~e~i~~ 253 (379)
. +++ ++.|+|.+++++ .+++.+|+.+.+... ..+|.++.||||||+|||+++.++ .+++.+
T Consensus 211 ~--------~l~-nV~f~G~~~~~el~~~l~~~~~~lv~~~~~~~~y~~~~~P~Kl~eymA~G~PVI~~~~~~~~~~v~~ 281 (339)
T 3rhz_A 211 E--------LPQ-NVHKINYRPDEQLLMEMSQGGFGLVWMDDKDKEYQSLYCSYKLGSFLAAGIPVIVQEGIANQELIEN 281 (339)
T ss_dssp C--------CCT-TEEEEECCCHHHHHHHHHTEEEEECCCCGGGHHHHTTCCCHHHHHHHHHTCCEEEETTCTTTHHHHH
T ss_pred c--------CcC-CEEEeCCCCHHHHHHHHHhCCEEEEECCCchhHHHHhcChHHHHHHHHcCCCEEEccChhHHHHHHh
Confidence 5 355 899999999999 788888888776111 235889999999999999999965 889999
Q ss_pred CCCEEEeCCHHHHHHHHHHHHhCCCCCCcHHH
Q 016975 254 FPNCRTYDDRNGFVEATLKALAEEPALPTEAQ 285 (379)
Q Consensus 254 ~~~g~~~~~~~~l~~~i~~~l~~~~~~~~~~~ 285 (379)
+.+|+++++.++++++|..+..+.-..|++++
T Consensus 282 ~~~G~~~~~~~e~~~~i~~l~~~~~~~m~~na 313 (339)
T 3rhz_A 282 NGLGWIVKDVEEAIMKVKNVNEDEYIELVKNV 313 (339)
T ss_dssp HTCEEEESSHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CCeEEEeCCHHHHHHHHHHhCHHHHHHHHHHH
Confidence 99999999999999999885432222454444
No 30
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.67 E-value=5.6e-17 Score=154.19 Aligned_cols=266 Identities=10% Similarity=0.021 Sum_probs=158.2
Q ss_pred ccccccCCCCCCcEEEEcCCcchhhhhcccccccccC-cEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceE
Q 016975 19 GDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKV 97 (379)
Q Consensus 19 ~~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~-~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 97 (379)
..+.+++.+.+||+||++.....++.. .....+.+ |++.+..+.. .+.. ..+ +.. ...+.+....+|.+
T Consensus 101 ~~l~~~l~~~kPDvVi~~g~~~~~~~~--~~aa~~~~IPv~h~~ag~r-s~~~--~~~-~~~----~~~r~~~~~~a~~~ 170 (396)
T 3dzc_A 101 LGMQQVLSSEQPDVVLVHGDTATTFAA--SLAAYYQQIPVGHVEAGLR-TGNI--YSP-WPE----EGNRKLTAALTQYH 170 (396)
T ss_dssp HHHHHHHHHHCCSEEEEETTSHHHHHH--HHHHHTTTCCEEEETCCCC-CSCT--TSS-TTH----HHHHHHHHHTCSEE
T ss_pred HHHHHHHHhcCCCEEEEECCchhHHHH--HHHHHHhCCCEEEEECCcc-cccc--ccC-CcH----HHHHHHHHHhcCEE
Confidence 356777888999999998765544431 12222333 7654333210 0110 000 111 11222222346999
Q ss_pred EEcChhhhhhh-hc-----cceee-c-ccCCCCccCcc--c-----cHHHhhcC-CCCCcceEEE-EEec-ccccCHHHH
Q 016975 98 IRLSAATQEYA-NS-----IICNV-H-GVNPKFLEIGK--K-----KKEQQQNG-THAFAKGAYY-IGKM-VWSKGYKEL 159 (379)
Q Consensus 98 i~~S~~~~~~~-~~-----~i~~i-~-gvd~~~~~~~~--~-----~~~~~~~~-~~~~~~~il~-vgrl-~~~Kg~~~l 159 (379)
++.|+..++.. +. ++.++ | ++|...+.+.. . ...+...+ ..++++.++. .+|. ...|+++.+
T Consensus 171 ~~~se~~~~~l~~~G~~~~ki~vvGn~~~d~~~~~~~~~~~~~~~~~~~r~~lg~l~~~~~~vlv~~hR~~~~~~~~~~l 250 (396)
T 3dzc_A 171 FAPTDTSRANLLQENYNAENIFVTGNTVIDALLAVREKIHTDMDLQATLESQFPMLDASKKLILVTGHRRESFGGGFERI 250 (396)
T ss_dssp EESSHHHHHHHHHTTCCGGGEEECCCHHHHHHHHHHHHHHHCHHHHHHHHHTCTTCCTTSEEEEEECSCBCCCTTHHHHH
T ss_pred ECCCHHHHHHHHHcCCCcCcEEEECCcHHHHHHHhhhhcccchhhHHHHHHHhCccCCCCCEEEEEECCcccchhHHHHH
Confidence 99998765443 22 23333 3 34432222111 0 11112222 1233445444 4454 345889999
Q ss_pred HHHHHHhHhhcCCcEEEEE-cCCcC-hHHHHHHHHhcCCeeEEecCCCCHH--HHHhhcCEEEecCCCCcchhHHHHHHH
Q 016975 160 LELLDDHQKELAGLEVDLY-GNGED-FNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALA 235 (379)
Q Consensus 160 i~a~~~l~~~~~~~~l~i~-G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~--~~~~~~dv~v~ps~~E~~~~~~~EAma 235 (379)
++++..+.+++|++++++. |.++. .+.+++... ...++.+.+.+...+ .+|+.||++|.+| | |+ ++|||+
T Consensus 251 l~A~~~l~~~~~~~~~v~~~g~~~~~~~~l~~~~~-~~~~v~~~~~lg~~~~~~l~~~ad~vv~~S---G-g~-~~EA~a 324 (396)
T 3dzc_A 251 CQALITTAEQHPECQILYPVHLNPNVREPVNKLLK-GVSNIVLIEPQQYLPFVYLMDRAHIILTDS---G-GI-QEEAPS 324 (396)
T ss_dssp HHHHHHHHHHCTTEEEEEECCBCHHHHHHHHHHTT-TCTTEEEECCCCHHHHHHHHHHCSEEEESC---S-GG-GTTGGG
T ss_pred HHHHHHHHHhCCCceEEEEeCCChHHHHHHHHHHc-CCCCEEEeCCCCHHHHHHHHHhcCEEEECC---c-cH-HHHHHH
Confidence 9999999888889998885 65543 333443322 223788888887666 9999999999998 3 44 389999
Q ss_pred cCCeEEecC-CCc-ccccccCCCEEEeC-CHHHHHHHHHHHHhCCCC--CCcHHHHhcCCHHHHHHHHHHHH
Q 016975 236 MGKIVVCAN-HPS-NDFFKQFPNCRTYD-DRNGFVEATLKALAEEPA--LPTEAQRHQLSWESATERFLQVA 302 (379)
Q Consensus 236 ~G~PVI~t~-~g~-~e~i~~~~~g~~~~-~~~~l~~~i~~~l~~~~~--~~~~~~~~~~sw~~~~~~~~~~~ 302 (379)
||+|||+++ .+. .|.+.++ .+++++ |++++++++.++++++.. .|+.. ...|.....++++.+..
T Consensus 325 ~G~PvV~~~~~~~~~e~v~~G-~~~lv~~d~~~l~~ai~~ll~d~~~~~~m~~~-~~~~~~~~aa~ri~~~l 394 (396)
T 3dzc_A 325 LGKPVLVMRETTERPEAVAAG-TVKLVGTNQQQICDALSLLLTDPQAYQAMSQA-HNPYGDGKACQRIADIL 394 (396)
T ss_dssp GTCCEEECCSSCSCHHHHHHT-SEEECTTCHHHHHHHHHHHHHCHHHHHHHHTS-CCTTCCSCHHHHHHHHH
T ss_pred cCCCEEEccCCCcchHHHHcC-ceEEcCCCHHHHHHHHHHHHcCHHHHHHHhhc-cCCCcCChHHHHHHHHH
Confidence 999999994 466 6777666 568887 899999999999987653 22221 13455555666665544
No 31
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.63 E-value=1.8e-16 Score=150.97 Aligned_cols=266 Identities=9% Similarity=0.025 Sum_probs=157.4
Q ss_pred ccccccCCCCCCcEEEEcCCcchhhhhcccccccccC-cEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceE
Q 016975 19 GDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKV 97 (379)
Q Consensus 19 ~~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~-~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 97 (379)
..+.+++.+.+||+|+++.....++.. .....+.+ |++.+..+.. .+. ....+.... ...+ ....+|.+
T Consensus 104 ~~l~~~l~~~kPD~Vi~~gd~~~~l~~--~laA~~~~IPv~h~~aglr-s~~---~~~~~p~~~---~r~~-~~~~a~~~ 173 (403)
T 3ot5_A 104 NGINEVIAAENPDIVLVHGDTTTSFAA--GLATFYQQKMLGHVEAGLR-TWN---KYSPFPEEM---NRQL-TGVMADIH 173 (403)
T ss_dssp HHHHHHHHHHCCSEEEEETTCHHHHHH--HHHHHHTTCEEEEESCCCC-CSC---TTSSTTHHH---HHHH-HHHHCSEE
T ss_pred HHHHHHHHHcCCCEEEEECCchhHHHH--HHHHHHhCCCEEEEECCcc-ccc---cccCCcHHH---HHHH-HHHhcCEE
Confidence 356777888999999998765444431 12222333 7653332210 000 000000111 1122 22236899
Q ss_pred EEcChhhhhhh-hc-----cceee-c-ccCCCCccCcc--ccHHHhhcCCCCCcceEEEEEecc-cccCHHHHHHHHHHh
Q 016975 98 IRLSAATQEYA-NS-----IICNV-H-GVNPKFLEIGK--KKKEQQQNGTHAFAKGAYYIGKMV-WSKGYKELLELLDDH 166 (379)
Q Consensus 98 i~~S~~~~~~~-~~-----~i~~i-~-gvd~~~~~~~~--~~~~~~~~~~~~~~~~il~vgrl~-~~Kg~~~li~a~~~l 166 (379)
++.|+..++.. +. ++.++ | ++|...+.+.. ........ .+.+..+++.||.. ..|+++.+++++..+
T Consensus 174 ~~~se~~~~~l~~~Gi~~~~i~vvGn~~~D~~~~~~~~~~~~~~~~~l--~~~~~vlv~~~r~~~~~~~l~~ll~a~~~l 251 (403)
T 3ot5_A 174 FSPTKQAKENLLAEGKDPATIFVTGNTAIDALKTTVQKDYHHPILENL--GDNRLILMTAHRRENLGEPMQGMFEAVREI 251 (403)
T ss_dssp EESSHHHHHHHHHTTCCGGGEEECCCHHHHHHHHHSCTTCCCHHHHSC--TTCEEEEECCCCHHHHTTHHHHHHHHHHHH
T ss_pred ECCCHHHHHHHHHcCCCcccEEEeCCchHHHHHhhhhhhcchHHHHhc--cCCCEEEEEeCcccccCcHHHHHHHHHHHH
Confidence 99997765433 32 33333 3 45532222211 11222222 22233455666753 357899999999999
Q ss_pred HhhcCCcEEEEE-cCCcC-hHHHHHHHHhcCCeeEEecCCCCHH--HHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEe
Q 016975 167 QKELAGLEVDLY-GNGED-FNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVC 242 (379)
Q Consensus 167 ~~~~~~~~l~i~-G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~--~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~ 242 (379)
.+++|++++++. |.++. .+.+++... ...++.+.+.+.+.+ .+|+.||++|.+| |...+||++||+|||+
T Consensus 252 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~-~~~~v~l~~~l~~~~~~~l~~~ad~vv~~S-----Gg~~~EA~a~g~PvV~ 325 (403)
T 3ot5_A 252 VESREDTELVYPMHLNPAVREKAMAILG-GHERIHLIEPLDAIDFHNFLRKSYLVFTDS-----GGVQEEAPGMGVPVLV 325 (403)
T ss_dssp HHHCTTEEEEEECCSCHHHHHHHHHHHT-TCTTEEEECCCCHHHHHHHHHHEEEEEECC-----HHHHHHGGGTTCCEEE
T ss_pred HHhCCCceEEEecCCCHHHHHHHHHHhC-CCCCEEEeCCCCHHHHHHHHHhcCEEEECC-----ccHHHHHHHhCCCEEE
Confidence 888899998887 44442 233333222 223788999988666 9999999999888 3444999999999999
Q ss_pred cC-CCc-ccccccCCCEEEeC-CHHHHHHHHHHHHhCCCC--CCcHHH---HhcCCHHHHHHHHHHHHh
Q 016975 243 AN-HPS-NDFFKQFPNCRTYD-DRNGFVEATLKALAEEPA--LPTEAQ---RHQLSWESATERFLQVAE 303 (379)
Q Consensus 243 t~-~g~-~e~i~~~~~g~~~~-~~~~l~~~i~~~l~~~~~--~~~~~~---~~~~sw~~~~~~~~~~~~ 303 (379)
++ .+. .|.+..+ +|++++ |++++++++.++++++.. .|+... ....+++.+++.+.+.+.
T Consensus 326 ~~~~~~~~e~v~~g-~~~lv~~d~~~l~~ai~~ll~~~~~~~~m~~~~~~~g~~~aa~rI~~~l~~~l~ 393 (403)
T 3ot5_A 326 LRDTTERPEGIEAG-TLKLIGTNKENLIKEALDLLDNKESHDKMAQAANPYGDGFAANRILAAIKSHFE 393 (403)
T ss_dssp CCSSCSCHHHHHHT-SEEECCSCHHHHHHHHHHHHHCHHHHHHHHHSCCTTCCSCHHHHHHHHHHHHHT
T ss_pred ecCCCcchhheeCC-cEEEcCCCHHHHHHHHHHHHcCHHHHHHHHhhcCcccCCcHHHHHHHHHHHHhC
Confidence 94 466 5666555 888887 999999999999987654 232211 133445556665555554
No 32
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.61 E-value=3.2e-15 Score=142.55 Aligned_cols=262 Identities=11% Similarity=-0.045 Sum_probs=159.7
Q ss_pred ccccccCCCCCCcEEEEcCCcchhhhhcccccccccC-cEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHH------
Q 016975 19 GDISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVD------ 91 (379)
Q Consensus 19 ~~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~-~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 91 (379)
..+.+++.+++||+|+++.....+. ...+... |+|...|+...... ....+.+.+.++..+
T Consensus 120 ~~l~~~l~~~~pDvVv~~~~~~~~~-----~aa~~~giP~v~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~~ 187 (412)
T 3otg_A 120 DELQPVIERLRPDLVVQEISNYGAG-----LAALKAGIPTICHGVGRDTPDD-------LTRSIEEEVRGLAQRLGLDLP 187 (412)
T ss_dssp HHHHHHHHHHCCSEEEEETTCHHHH-----HHHHHHTCCEEEECCSCCCCSH-------HHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHhcCCCEEEECchhhHHH-----HHHHHcCCCEEEecccccCchh-------hhHHHHHHHHHHHHHcCCCCC
Confidence 3566677788999999874332222 2222334 88888877532100 112233334433333
Q ss_pred -----HhcceEEEcChhhhhhhhcccee-ecccCCCCccCccccHHHhhcCCCCCcceEEEEEecccccCHHHHHHHHHH
Q 016975 92 -----IYCHKVIRLSAATQEYANSIICN-VHGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDD 165 (379)
Q Consensus 92 -----~~~d~vi~~S~~~~~~~~~~i~~-i~gvd~~~~~~~~~~~~~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~ 165 (379)
..+|.+++.+....+.....+.. .+.+....................+.+.++++.|++. .++.+.+.++++.
T Consensus 188 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlv~~G~~~-~~~~~~~~~~~~~ 266 (412)
T 3otg_A 188 PGRIDGFGNPFIDIFPPSLQEPEFRARPRRHELRPVPFAEQGDLPAWLSSRDTARPLVYLTLGTSS-GGTVEVLRAAIDG 266 (412)
T ss_dssp SSCCGGGGCCEEECSCGGGSCHHHHTCTTEEECCCCCCCCCCCCCGGGGGSCTTSCEEEEECTTTT-CSCHHHHHHHHHH
T ss_pred cccccCCCCeEEeeCCHHhcCCcccCCCCcceeeccCCCCCCCCCCccccccCCCCEEEEEcCCCC-cCcHHHHHHHHHH
Confidence 23577888886555443322111 1111111111000000000011222344667778886 7788888888777
Q ss_pred hHhhcCCcEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecC
Q 016975 166 HQKELAGLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCAN 244 (379)
Q Consensus 166 l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~ 244 (379)
+.+. ++++++++++.. .+.++ +...++.+.|++ +..++|+.||+||.++ .+.+++|||+||+|+|++.
T Consensus 267 l~~~--~~~~~~~~g~~~~~~~l~----~~~~~v~~~~~~-~~~~~l~~ad~~v~~~----g~~t~~Ea~a~G~P~v~~p 335 (412)
T 3otg_A 267 LAGL--DADVLVASGPSLDVSGLG----EVPANVRLESWV-PQAALLPHVDLVVHHG----GSGTTLGALGAGVPQLSFP 335 (412)
T ss_dssp HHTS--SSEEEEECCSSCCCTTCC----CCCTTEEEESCC-CHHHHGGGCSEEEESC----CHHHHHHHHHHTCCEEECC
T ss_pred HHcC--CCEEEEEECCCCChhhhc----cCCCcEEEeCCC-CHHHHHhcCcEEEECC----chHHHHHHHHhCCCEEecC
Confidence 7543 566666654433 33333 234488999999 4558999999999775 3478999999999999987
Q ss_pred CCc-----ccccccCCCEEEeC----CHHHHHHHHHHHHhCCCC--CCcH---HHHhcCCHHHHHHHHHHHHhc
Q 016975 245 HPS-----NDFFKQFPNCRTYD----DRNGFVEATLKALAEEPA--LPTE---AQRHQLSWESATERFLQVAEL 304 (379)
Q Consensus 245 ~g~-----~e~i~~~~~g~~~~----~~~~l~~~i~~~l~~~~~--~~~~---~~~~~~sw~~~~~~~~~~~~~ 304 (379)
.+. .+.+.+..+|++++ |+++++++|.++++++.. .+++ .....++|+.+++.+.+++..
T Consensus 336 ~~~~q~~~~~~v~~~g~g~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 409 (412)
T 3otg_A 336 WAGDSFANAQAVAQAGAGDHLLPDNISPDSVSGAAKRLLAEESYRAGARAVAAEIAAMPGPDEVVRLLPGFASR 409 (412)
T ss_dssp CSTTHHHHHHHHHHHTSEEECCGGGCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHSCCHHHHHTTHHHHHC-
T ss_pred CchhHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 743 55677778898887 789999999999998654 3333 233778999999999998863
No 33
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.52 E-value=1.1e-13 Score=130.10 Aligned_cols=237 Identities=12% Similarity=-0.039 Sum_probs=144.5
Q ss_pred cccccCCCCCCcEEEEcCCcchhhhhcccccccccC-cEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEE
Q 016975 20 DISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVI 98 (379)
Q Consensus 20 ~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~-~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 98 (379)
...+++++++||+|+........... ...+..+ |++....+..+ + . .++++. .+++.+.
T Consensus 83 ~~~~~l~~~~PDvVi~~g~~~s~p~~---laA~~~~iP~vihe~n~~~--------G----~----~nr~l~-~~a~~v~ 142 (365)
T 3s2u_A 83 QALRVIRQLRPVCVLGLGGYVTGPGG---LAARLNGVPLVIHEQNAVA--------G----T----ANRSLA-PIARRVC 142 (365)
T ss_dssp HHHHHHHHHCCSEEEECSSSTHHHHH---HHHHHTTCCEEEEECSSSC--------C----H----HHHHHG-GGCSEEE
T ss_pred HHHHHHHhcCCCEEEEcCCcchHHHH---HHHHHcCCCEEEEecchhh--------h----h----HHHhhc-cccceee
Confidence 34566778999999987544322111 1122223 77654333221 1 1 122222 2357776
Q ss_pred EcChhhhhhhhccceeecccCCCCccCccccHHHhhcCCCCCcceE-EEEEecccccCHHHHHHHHHHhHhhcCCcEEEE
Q 016975 99 RLSAATQEYANSIICNVHGVNPKFLEIGKKKKEQQQNGTHAFAKGA-YYIGKMVWSKGYKELLELLDDHQKELAGLEVDL 177 (379)
Q Consensus 99 ~~S~~~~~~~~~~i~~i~gvd~~~~~~~~~~~~~~~~~~~~~~~~i-l~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i 177 (379)
+..........+.+.+-+.+...++..... .....++++.+ ++.|+....+.-+.+.+++..+.... ++.+++
T Consensus 143 ~~~~~~~~~~~k~~~~g~pvr~~~~~~~~~-----~~~~~~~~~~ilv~gGs~g~~~~~~~~~~al~~l~~~~-~~~vi~ 216 (365)
T 3s2u_A 143 EAFPDTFPASDKRLTTGNPVRGELFLDAHA-----RAPLTGRRVNLLVLGGSLGAEPLNKLLPEALAQVPLEI-RPAIRH 216 (365)
T ss_dssp ESSTTSSCC---CEECCCCCCGGGCCCTTS-----SCCCTTSCCEEEECCTTTTCSHHHHHHHHHHHTSCTTT-CCEEEE
T ss_pred ecccccccCcCcEEEECCCCchhhccchhh-----hcccCCCCcEEEEECCcCCccccchhhHHHHHhccccc-ceEEEE
Confidence 655443221112222225555444432211 11123334444 45567888888888889988875443 444544
Q ss_pred EcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc---------c
Q 016975 178 YGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS---------N 248 (379)
Q Consensus 178 ~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~---------~ 248 (379)
.+...+.+.+.+..++.+.++++.+++++..++|+.||++|.-+ -++++.|+|++|+|+|....+. .
T Consensus 217 ~~G~~~~~~~~~~~~~~~~~~~v~~f~~dm~~~l~~aDlvI~ra----G~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~NA 292 (365)
T 3s2u_A 217 QAGRQHAEITAERYRTVAVEADVAPFISDMAAAYAWADLVICRA----GALTVSELTAAGLPAFLVPLPHAIDDHQTRNA 292 (365)
T ss_dssp ECCTTTHHHHHHHHHHTTCCCEEESCCSCHHHHHHHCSEEEECC----CHHHHHHHHHHTCCEEECC-----CCHHHHHH
T ss_pred ecCccccccccceecccccccccccchhhhhhhhccceEEEecC----CcchHHHHHHhCCCeEEeccCCCCCcHHHHHH
Confidence 43334557777778888889999999999889999999999543 3789999999999999877632 1
Q ss_pred cccccCCCEEEeC----CHHHHHHHHHHHHhCCCC--CCcHHHH
Q 016975 249 DFFKQFPNCRTYD----DRNGFVEATLKALAEEPA--LPTEAQR 286 (379)
Q Consensus 249 e~i~~~~~g~~~~----~~~~l~~~i~~~l~~~~~--~~~~~~~ 286 (379)
+.+.+...|++++ |+++|+++|.++++|++. .|+++.+
T Consensus 293 ~~l~~~G~a~~l~~~~~~~~~L~~~i~~ll~d~~~~~~m~~~a~ 336 (365)
T 3s2u_A 293 EFLVRSGAGRLLPQKSTGAAELAAQLSEVLMHPETLRSMADQAR 336 (365)
T ss_dssp HHHHTTTSEEECCTTTCCHHHHHHHHHHHHHCTHHHHHHHHHHH
T ss_pred HHHHHCCCEEEeecCCCCHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 3466666787776 689999999999999765 5666554
No 34
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.50 E-value=1.3e-13 Score=132.28 Aligned_cols=154 Identities=12% Similarity=0.072 Sum_probs=108.8
Q ss_pred cceEEEEEecccccCHHHHHHHHHHhHhhcCCcEE-EEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEe
Q 016975 141 AKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEV-DLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLN 219 (379)
Q Consensus 141 ~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l-~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ 219 (379)
..+++++|++. .++.+.+..++..+.+ .+++++ +++|++++.+.++ ++..++.+.|++++. ++|..||+||.
T Consensus 233 ~~v~v~~Gs~~-~~~~~~~~~~~~~l~~-~~~~~~~~~~G~~~~~~~l~----~~~~~v~~~~~~~~~-~~l~~ad~~v~ 305 (430)
T 2iyf_A 233 KVVLVSLGSAF-TKQPAFYRECVRAFGN-LPGWHLVLQIGRKVTPAELG----ELPDNVEVHDWVPQL-AILRQADLFVT 305 (430)
T ss_dssp EEEEEECTTTC-C-CHHHHHHHHHHHTT-CTTEEEEEECC---CGGGGC----SCCTTEEEESSCCHH-HHHTTCSEEEE
T ss_pred CeEEEEcCCCC-CCcHHHHHHHHHHHhc-CCCeEEEEEeCCCCChHHhc----cCCCCeEEEecCCHH-HHhhccCEEEE
Confidence 45778889987 5555555555444432 256777 5789887655442 234478999999877 79999999998
Q ss_pred cCCCCcchhHHHHHHHcCCeEEecCCCc-----ccccccCCCEEEeC----CHHHHHHHHHHHHhCCCC--CCcH---HH
Q 016975 220 PSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----DRNGFVEATLKALAEEPA--LPTE---AQ 285 (379)
Q Consensus 220 ps~~E~~~~~~~EAma~G~PVI~t~~g~-----~e~i~~~~~g~~~~----~~~~l~~~i~~~l~~~~~--~~~~---~~ 285 (379)
.+ -+++++|||++|+|+|++..++ .+.+.+...|+.++ |+++++++|.++++++.. .+++ ..
T Consensus 306 ~~----G~~t~~Ea~~~G~P~i~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~ 381 (430)
T 2iyf_A 306 HA----GAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKLATEEATADLLRETALALVDDPEVARRLRRIQAEM 381 (430)
T ss_dssp CC----CHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEECCCC-CCHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CC----CccHHHHHHHhCCCEEECCCccchHHHHHHHHHcCCEEEcCCCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 65 2378999999999999998743 44566777898877 789999999999987653 2222 22
Q ss_pred HhcCCHHHHHHHHHHHHhcc
Q 016975 286 RHQLSWESATERFLQVAELD 305 (379)
Q Consensus 286 ~~~~sw~~~~~~~~~~~~~~ 305 (379)
....+|+.+++.+.++++..
T Consensus 382 ~~~~~~~~~~~~i~~~~~~~ 401 (430)
T 2iyf_A 382 AQEGGTRRAADLIEAELPAR 401 (430)
T ss_dssp HHHCHHHHHHHHHHTTSCC-
T ss_pred HhcCcHHHHHHHHHHHhhcc
Confidence 35678999999888877643
No 35
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.44 E-value=3.3e-13 Score=127.73 Aligned_cols=153 Identities=12% Similarity=0.052 Sum_probs=111.5
Q ss_pred cceEEEEEecccccCH-HHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEe
Q 016975 141 AKGAYYIGKMVWSKGY-KELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLN 219 (379)
Q Consensus 141 ~~~il~vgrl~~~Kg~-~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ 219 (379)
+.+++++|+....|+. ..+++++.+. .+.|+++++++|++++.+.+. ....++.+.|+++..+ ++..||++|.
T Consensus 219 ~~vlv~~G~~~~~~~~~~~~~~~~~~~-~~~p~~~~v~~~~~~~~~~l~----~~~~~v~~~~~~~~~~-ll~~ad~~v~ 292 (391)
T 3tsa_A 219 RRVCICMGRMVLNATGPAPLLRAVAAA-TELPGVEAVIAVPPEHRALLT----DLPDNARIAESVPLNL-FLRTCELVIC 292 (391)
T ss_dssp EEEEEECCHHHHHHHCSHHHHHHHHHH-HTSTTEEEEEECCGGGGGGCT----TCCTTEEECCSCCGGG-TGGGCSEEEE
T ss_pred CEEEEEcCCCCCcccchHHHHHHHHHh-ccCCCeEEEEEECCcchhhcc----cCCCCEEEeccCCHHH-HHhhCCEEEe
Confidence 4456667888765544 7777777777 777789999999877644433 3344888889886554 7799999995
Q ss_pred cCCCCcchhHHHHHHHcCCeEEecCCCc-----ccccccCCCEEEeC------CHHHHHHHHHHHHhCCCC--CCcH---
Q 016975 220 PSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD------DRNGFVEATLKALAEEPA--LPTE--- 283 (379)
Q Consensus 220 ps~~E~~~~~~~EAma~G~PVI~t~~g~-----~e~i~~~~~g~~~~------~~~~l~~~i~~~l~~~~~--~~~~--- 283 (379)
. +.+.++.|||++|+|+|+..... .+.+.+...|+.++ |++++++++.++++++.. .+.+
T Consensus 293 ~----~G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~ 368 (391)
T 3tsa_A 293 A----GGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICLPDEQAQSDHEQFTDSIATVLGDTGFAAAAIKLSD 368 (391)
T ss_dssp C----CCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTTSEEECCSHHHHTCHHHHHHHHHHHHTCTHHHHHHHHHHH
T ss_pred C----CCHHHHHHHHHhCCCEEecCCcccHHHHHHHHHHcCCEEecCcccccCCHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 4 45578999999999999976522 45677778898775 489999999999998654 2322
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 016975 284 AQRHQLSWESATERFLQVAE 303 (379)
Q Consensus 284 ~~~~~~sw~~~~~~~~~~~~ 303 (379)
......+|+.+++.+.++..
T Consensus 369 ~~~~~~~~~~~~~~i~~~~~ 388 (391)
T 3tsa_A 369 EITAMPHPAALVRTLENTAA 388 (391)
T ss_dssp HHHTSCCHHHHHHHHHHC--
T ss_pred HHHcCCCHHHHHHHHHHHHh
Confidence 33367889988888776543
No 36
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=99.40 E-value=1.8e-12 Score=122.34 Aligned_cols=236 Identities=14% Similarity=0.018 Sum_probs=141.3
Q ss_pred cccccCCCCCCcEEEEcCCcchhhhhcccccccccC-cEEEEeccChHHHHHHhhcchHHHHHHHHHHHHHHHHhcceEE
Q 016975 20 DISEVIPDEVADIAVLEEPEHLTWFHHGKRWKTKFR-YVVGIVHTNYLEYVKREKNGRLQAFLLKYANSWLVDIYCHKVI 98 (379)
Q Consensus 20 ~l~~~l~~~~~DvV~~~~p~~~~~~~~~~~~~~~~~-~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 98 (379)
.+.+++.+.+||+|+++.....++.. ....+.+ |++.+..+.. .....+.. ...+.+....+|.++
T Consensus 85 ~l~~~l~~~kPD~Vlv~gd~~~~~aa---laA~~~~IPv~h~eaglr------s~~~~~pe----e~nR~~~~~~a~~~~ 151 (385)
T 4hwg_A 85 KVDEVLEKEKPDAVLFYGDTNSCLSA---IAAKRRKIPIFHMEAGNR------CFDQRVPE----EINRKIIDHISDVNI 151 (385)
T ss_dssp HHHHHHHHHCCSEEEEESCSGGGGGH---HHHHHTTCCEEEESCCCC------CSCTTSTH----HHHHHHHHHHCSEEE
T ss_pred HHHHHHHhcCCcEEEEECCchHHHHH---HHHHHhCCCEEEEeCCCc------cccccCcH----HHHHHHHHhhhceee
Confidence 56778888999999998755444431 2222333 8643333220 00000111 112222222368999
Q ss_pred EcChhhhhhh-hcc-----ceee-c-ccCCCCccC--ccccHHHhhcCCCCCcceEEEEEec---ccccCHHHHHHHHHH
Q 016975 99 RLSAATQEYA-NSI-----ICNV-H-GVNPKFLEI--GKKKKEQQQNGTHAFAKGAYYIGKM---VWSKGYKELLELLDD 165 (379)
Q Consensus 99 ~~S~~~~~~~-~~~-----i~~i-~-gvd~~~~~~--~~~~~~~~~~~~~~~~~~il~vgrl---~~~Kg~~~li~a~~~ 165 (379)
+.++..++.. +.+ +.++ | ++|...+.. ......+...+..+.+..+++.||. ...|++..+++++..
T Consensus 152 ~~te~~~~~l~~~G~~~~~I~vtGnp~~D~~~~~~~~~~~~~~~~~lgl~~~~~iLvt~hr~e~~~~~~~l~~ll~al~~ 231 (385)
T 4hwg_A 152 TLTEHARRYLIAEGLPAELTFKSGSHMPEVLDRFMPKILKSDILDKLSLTPKQYFLISSHREENVDVKNNLKELLNSLQM 231 (385)
T ss_dssp ESSHHHHHHHHHTTCCGGGEEECCCSHHHHHHHHHHHHHHCCHHHHTTCCTTSEEEEEECCC-----CHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCCcCcEEEECCchHHHHHHhhhhcchhHHHHHcCCCcCCEEEEEeCCchhcCcHHHHHHHHHHHHH
Confidence 9997765433 322 3332 2 334211110 0111122233333334445555553 345789999999999
Q ss_pred hHhhcCCcEEEEEcCCcChHHHHHHHHhc-C-----CeeEEecCCCCHH--HHHhhcCEEEecCCCCcchhHHHHHHHcC
Q 016975 166 HQKELAGLEVDLYGNGEDFNQIQEAAEKL-K-----IVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMG 237 (379)
Q Consensus 166 l~~~~~~~~l~i~G~g~~~~~l~~~~~~~-~-----l~v~~~g~~~~~~--~~~~~~dv~v~ps~~E~~~~~~~EAma~G 237 (379)
+.+++ ++.+++... + .+++..++. + .++.+.+.+.+.+ .+|+.||+++.+| |..+.||+++|
T Consensus 232 l~~~~-~~~vv~p~~-p---~~~~~l~~~~~~~~~~~~v~l~~~lg~~~~~~l~~~adlvvt~S-----Ggv~~EA~alG 301 (385)
T 4hwg_A 232 LIKEY-NFLIIFSTH-P---RTKKRLEDLEGFKELGDKIRFLPAFSFTDYVKLQMNAFCILSDS-----GTITEEASILN 301 (385)
T ss_dssp HHHHH-CCEEEEEEC-H---HHHHHHHTSGGGGGTGGGEEECCCCCHHHHHHHHHHCSEEEECC-----TTHHHHHHHTT
T ss_pred HHhcC-CeEEEEECC-h---HHHHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHHhCcEEEECC-----ccHHHHHHHcC
Confidence 87765 777776543 3 244444433 2 3677888887766 8999999999776 45679999999
Q ss_pred CeEEecCC-Cc-ccccccCCCEEEeC-CHHHHHHHHHHHHhCCCC
Q 016975 238 KIVVCANH-PS-NDFFKQFPNCRTYD-DRNGFVEATLKALAEEPA 279 (379)
Q Consensus 238 ~PVI~t~~-g~-~e~i~~~~~g~~~~-~~~~l~~~i~~~l~~~~~ 279 (379)
+|||+.+. .. .|.+..+ ++++++ |++++.+++.++++++..
T Consensus 302 ~Pvv~~~~~ter~e~v~~G-~~~lv~~d~~~i~~ai~~ll~d~~~ 345 (385)
T 4hwg_A 302 LPALNIREAHERPEGMDAG-TLIMSGFKAERVLQAVKTITEEHDN 345 (385)
T ss_dssp CCEEECSSSCSCTHHHHHT-CCEECCSSHHHHHHHHHHHHTTCBT
T ss_pred CCEEEcCCCccchhhhhcC-ceEEcCCCHHHHHHHHHHHHhChHH
Confidence 99999887 33 5666665 677786 999999999999998765
No 37
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=99.38 E-value=1.4e-12 Score=123.77 Aligned_cols=146 Identities=12% Similarity=-0.032 Sum_probs=95.1
Q ss_pred CcceEEEEEeccccc----------CHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHH
Q 016975 140 FAKGAYYIGKMVWSK----------GYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADL 209 (379)
Q Consensus 140 ~~~~il~vgrl~~~K----------g~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~ 209 (379)
.+.+++++|++...| .+..+++++..+ +++++++|++.+.+.+. ++..++.+.|+++ ..+
T Consensus 227 ~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~~~-----~~~~v~~~~~~~~~~l~----~~~~~v~~~~~~~-~~~ 296 (398)
T 4fzr_A 227 QPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPKL-----GFEVVVAVSDKLAQTLQ----PLPEGVLAAGQFP-LSA 296 (398)
T ss_dssp SCEEECC----------------CCSHHHHHHHGGGG-----TCEEEECCCC------------CCTTEEEESCCC-HHH
T ss_pred CCEEEEEccCcccccccccccchHHHHHHHHHHHHhC-----CCEEEEEeCCcchhhhc----cCCCcEEEeCcCC-HHH
Confidence 345677889986544 466666666543 68899988877644443 3445889999985 447
Q ss_pred HHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc-----ccccccCCCEEEeC----CHHHHHHHHHHHHhCCCC-
Q 016975 210 IFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----DRNGFVEATLKALAEEPA- 279 (379)
Q Consensus 210 ~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-----~e~i~~~~~g~~~~----~~~~l~~~i~~~l~~~~~- 279 (379)
++..||++|. .+.+.++.|||++|+|+|+...+. .+.+.+...|+.++ |+++++++|.++++++..
T Consensus 297 ll~~ad~~v~----~gG~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~ai~~ll~~~~~~ 372 (398)
T 4fzr_A 297 IMPACDVVVH----HGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAGVESVLAACARIRDDSSYV 372 (398)
T ss_dssp HGGGCSEEEE----CCCHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHTTSEEECC-------CHHHHHHHHHHCTHHH
T ss_pred HHhhCCEEEe----cCCHHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHHHhCHHHH
Confidence 9999999995 445789999999999999965532 45677888998877 789999999999998754
Q ss_pred -CCcH---HHHhcCCHHHHHHHHH
Q 016975 280 -LPTE---AQRHQLSWESATERFL 299 (379)
Q Consensus 280 -~~~~---~~~~~~sw~~~~~~~~ 299 (379)
.+.+ ......+|+.+++.+.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~l~ 396 (398)
T 4fzr_A 373 GNARRLAAEMATLPTPADIVRLIE 396 (398)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHh
Confidence 2333 2337788888887764
No 38
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=99.20 E-value=2.2e-11 Score=115.56 Aligned_cols=151 Identities=10% Similarity=0.012 Sum_probs=102.3
Q ss_pred cceEEEEEecccc-cCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEe
Q 016975 141 AKGAYYIGKMVWS-KGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLN 219 (379)
Q Consensus 141 ~~~il~vgrl~~~-Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ 219 (379)
+.+++++|++... ++.+.+.++++.+.+. +++++++|++.+.+.++ ....++.+.|++ +..++|..||+||.
T Consensus 233 ~~v~v~~G~~~~~~~~~~~~~~~~~~l~~~--~~~~v~~~g~~~~~~l~----~~~~~v~~~~~~-~~~~ll~~ad~~v~ 305 (398)
T 3oti_A 233 PEVAITMGTIELQAFGIGAVEPIIAAAGEV--DADFVLALGDLDISPLG----TLPRNVRAVGWT-PLHTLLRTCTAVVH 305 (398)
T ss_dssp CEEEECCTTTHHHHHCGGGHHHHHHHHHTS--SSEEEEECTTSCCGGGC----SCCTTEEEESSC-CHHHHHTTCSEEEE
T ss_pred CEEEEEcCCCccccCcHHHHHHHHHHHHcC--CCEEEEEECCcChhhhc----cCCCcEEEEccC-CHHHHHhhCCEEEE
Confidence 4566778988554 3555555555555432 68899998877644333 334488999999 45579999999995
Q ss_pred cCCCCcchhHHHHHHHcCCeEEec----CCC-cc--cccccCCCEEEeCCHHHHHHHHHHHHhCCCC--CCcH---HHHh
Q 016975 220 PSTTDVVCTTTAEALAMGKIVVCA----NHP-SN--DFFKQFPNCRTYDDRNGFVEATLKALAEEPA--LPTE---AQRH 287 (379)
Q Consensus 220 ps~~E~~~~~~~EAma~G~PVI~t----~~g-~~--e~i~~~~~g~~~~~~~~l~~~i~~~l~~~~~--~~~~---~~~~ 287 (379)
. +.+.++.|||++|+|+|+. +.+ .. +.+.+...|+.++..+...+++.++++++.. .+.+ ....
T Consensus 306 ~----~G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~~~~~~~g~g~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~ 381 (398)
T 3oti_A 306 H----GGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVSTSDKVDADLLRRLIGDESLRTAAREVREEMVA 381 (398)
T ss_dssp C----CCHHHHHHHHHHTCCEEECCCTTCCSSCTTHHHHHHHTSEEECCGGGCCHHHHHHHHHCHHHHHHHHHHHHHHHT
T ss_pred C----CCHHHHHHHHHhCCCEEEcCCCchhHHHHHHHHHHHCCCEEeeCCCCCCHHHHHHHHcCHHHHHHHHHHHHHHHh
Confidence 4 4557899999999999994 442 25 7788888998887222223333377777544 2222 3347
Q ss_pred cCCHHHHHHHHHHHH
Q 016975 288 QLSWESATERFLQVA 302 (379)
Q Consensus 288 ~~sw~~~~~~~~~~~ 302 (379)
..+|+.+++.+.+++
T Consensus 382 ~~~~~~~~~~l~~l~ 396 (398)
T 3oti_A 382 LPTPAETVRRIVERI 396 (398)
T ss_dssp SCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 889999998887765
No 39
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=99.20 E-value=7.6e-11 Score=111.62 Aligned_cols=149 Identities=13% Similarity=0.031 Sum_probs=103.8
Q ss_pred cceEEEEEeccccc--CHHHHHHHHHHhHhhcCCcEEEE-EcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEE
Q 016975 141 AKGAYYIGKMVWSK--GYKELLELLDDHQKELAGLEVDL-YGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVF 217 (379)
Q Consensus 141 ~~~il~vgrl~~~K--g~~~li~a~~~l~~~~~~~~l~i-~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~ 217 (379)
+.++++.|+....+ .+..+++++.. .+ +++++ +|++.+.+.+++ ...++.+.+++++. ++|..||++
T Consensus 232 ~~v~v~~G~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~g~~~~~~~~~~----~~~~v~~~~~~~~~-~ll~~ad~~ 301 (402)
T 3ia7_A 232 PVLLVSLGNQFNEHPEFFRACAQAFAD----TP-WHVVMAIGGFLDPAVLGP----LPPNVEAHQWIPFH-SVLAHARAC 301 (402)
T ss_dssp CEEEEECCSCSSCCHHHHHHHHHHHTT----SS-CEEEEECCTTSCGGGGCS----CCTTEEEESCCCHH-HHHTTEEEE
T ss_pred CEEEEECCCCCcchHHHHHHHHHHHhc----CC-cEEEEEeCCcCChhhhCC----CCCcEEEecCCCHH-HHHhhCCEE
Confidence 44667788876554 23344444332 23 55555 676666544332 34488999999888 799999999
Q ss_pred EecCCCCcchhHHHHHHHcCCeEEecCC-C-----cccccccCCCEEEeC----CHHHHHHHHHHHHhCCCC--CC---c
Q 016975 218 LNPSTTDVVCTTTAEALAMGKIVVCANH-P-----SNDFFKQFPNCRTYD----DRNGFVEATLKALAEEPA--LP---T 282 (379)
Q Consensus 218 v~ps~~E~~~~~~~EAma~G~PVI~t~~-g-----~~e~i~~~~~g~~~~----~~~~l~~~i~~~l~~~~~--~~---~ 282 (379)
|..+- ..++.|||++|+|+|+... . ..+.+.+...|..++ |++++++++.++++++.. .+ +
T Consensus 302 v~~~G----~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~~~~ll~~~~~~~~~~~~~ 377 (402)
T 3ia7_A 302 LTHGT----TGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQLEPASIREAVERLAADSAVRERVRRMQ 377 (402)
T ss_dssp EECCC----HHHHHHHHHTTCCEEECGGGCGGGHHHHHHHHHTTSEEECCGGGCSHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred EECCC----HHHHHHHHHhCCCEEEeCCCcccHHHHHHHHHHcCCEEEccCCCCCHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 97752 3678999999999996554 2 255677778898876 789999999999998643 22 2
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 016975 283 EAQRHQLSWESATERFLQVAE 303 (379)
Q Consensus 283 ~~~~~~~sw~~~~~~~~~~~~ 303 (379)
+......+++.+++.+.+++.
T Consensus 378 ~~~~~~~~~~~~~~~i~~~~~ 398 (402)
T 3ia7_A 378 RDILSSGGPARAADEVEAYLG 398 (402)
T ss_dssp HHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHhhCChHHHHHHHHHHHHh
Confidence 233366788888888887765
No 40
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=99.19 E-value=1.6e-10 Score=108.91 Aligned_cols=122 Identities=11% Similarity=0.025 Sum_probs=91.3
Q ss_pred cceEEEEEecccc-------cCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhh
Q 016975 141 AKGAYYIGKMVWS-------KGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHD 213 (379)
Q Consensus 141 ~~~il~vgrl~~~-------Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~ 213 (379)
..+++++|++... +.+..+++++..+ ++++++++++++.+.++ ....++.+ |+++. .++|..
T Consensus 211 ~~v~v~~Gs~~~~~~~~~~~~~~~~~~~al~~~-----~~~~~~~~g~~~~~~l~----~~~~~v~~-~~~~~-~~~l~~ 279 (384)
T 2p6p_A 211 QRVLVTSGSRVAKESYDRNFDFLRGLAKDLVRW-----DVELIVAAPDTVAEALR----AEVPQARV-GWTPL-DVVAPT 279 (384)
T ss_dssp CEEEEECSSSSSCCSSCCCCTTHHHHHHHHHTT-----TCEEEEECCHHHHHHHH----HHCTTSEE-ECCCH-HHHGGG
T ss_pred CEEEEECCCCCccccccccHHHHHHHHHHHhcC-----CcEEEEEeCCCCHHhhC----CCCCceEE-cCCCH-HHHHhh
Confidence 4467888998765 6777888887653 57888866544333333 23447888 98864 469999
Q ss_pred cCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc-----ccccccCCCEEEeC----CHHHHHHHHHHHHhCC
Q 016975 214 YKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----DRNGFVEATLKALAEE 277 (379)
Q Consensus 214 ~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-----~e~i~~~~~g~~~~----~~~~l~~~i~~~l~~~ 277 (379)
+|+||..+ .+++++|||++|+|+|+...++ .+.+.+...|+.++ ++++++++|.++++++
T Consensus 280 ~d~~v~~~----G~~t~~Ea~~~G~P~v~~p~~~dq~~~a~~~~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~ 348 (384)
T 2p6p_A 280 CDLLVHHA----GGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAIALLPGEDSTEAIADSCQELQAKD 348 (384)
T ss_dssp CSEEEECS----CTTHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEECCTTCCCHHHHHHHHHHHHHCH
T ss_pred CCEEEeCC----cHHHHHHHHHhCCCEEEccCcccchHHHHHHHHCCCeEecCcCCCCHHHHHHHHHHHHcCH
Confidence 99999864 3568999999999999998743 34466667888776 7899999999999874
No 41
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=99.15 E-value=3.5e-10 Score=107.68 Aligned_cols=149 Identities=14% Similarity=0.067 Sum_probs=100.6
Q ss_pred cceEEEEEecccccC--HHHHHHHHHHhHhhcCCcEEEE-EcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEE
Q 016975 141 AKGAYYIGKMVWSKG--YKELLELLDDHQKELAGLEVDL-YGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVF 217 (379)
Q Consensus 141 ~~~il~vgrl~~~Kg--~~~li~a~~~l~~~~~~~~l~i-~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~ 217 (379)
+.++++.|+.....+ +..+++++. ..+ +++++ +|++.+.+.++ .+..++.+.+++++. ++|..||++
T Consensus 248 ~~v~v~~Gs~~~~~~~~~~~~~~al~----~~~-~~~v~~~g~~~~~~~l~----~~~~~v~~~~~~~~~-~ll~~ad~~ 317 (415)
T 3rsc_A 248 PVVLVSLGTTFNDRPGFFRDCARAFD----GQP-WHVVMTLGGQVDPAALG----DLPPNVEAHRWVPHV-KVLEQATVC 317 (415)
T ss_dssp CEEEEECTTTSCCCHHHHHHHHHHHT----TSS-CEEEEECTTTSCGGGGC----CCCTTEEEESCCCHH-HHHHHEEEE
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHh----cCC-cEEEEEeCCCCChHHhc----CCCCcEEEEecCCHH-HHHhhCCEE
Confidence 445667787754322 333344332 233 67776 67776654433 234488899998877 799999999
Q ss_pred EecCCCCcchhHHHHHHHcCCeEEecCCCc-----ccccccCCCEEEeC----CHHHHHHHHHHHHhCCCC--CCc---H
Q 016975 218 LNPSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----DRNGFVEATLKALAEEPA--LPT---E 283 (379)
Q Consensus 218 v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-----~e~i~~~~~g~~~~----~~~~l~~~i~~~l~~~~~--~~~---~ 283 (379)
|..+ -..++.|||++|+|+|+..... .+.+.+...|..++ +++++++++.++++++.. .+. +
T Consensus 318 v~~~----G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~ 393 (415)
T 3rsc_A 318 VTHG----GMGTLMEALYWGRPLVVVPQSFDVQPMARRVDQLGLGAVLPGEKADGDTLLAAVGAVAADPALLARVEAMRG 393 (415)
T ss_dssp EESC----CHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHHTCEEECCGGGCCHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred EECC----cHHHHHHHHHhCCCEEEeCCcchHHHHHHHHHHcCCEEEcccCCCCHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 9765 2368899999999999965532 44566667887776 789999999999988643 222 2
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 016975 284 AQRHQLSWESATERFLQVAE 303 (379)
Q Consensus 284 ~~~~~~sw~~~~~~~~~~~~ 303 (379)
.......++.+++.+.+++.
T Consensus 394 ~~~~~~~~~~~~~~i~~~~~ 413 (415)
T 3rsc_A 394 HVRRAGGAARAADAVEAYLA 413 (415)
T ss_dssp HHHHSCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhh
Confidence 22356677777777776654
No 42
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=99.06 E-value=8e-10 Score=108.16 Aligned_cols=135 Identities=13% Similarity=0.064 Sum_probs=99.6
Q ss_pred eEEEEEecccccCHHHHHHHHHHhHhhcCCcEEE--EEcCC--cChHHHHHHHHhcCC--eeEEecCCCCHH--HHHhhc
Q 016975 143 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVD--LYGNG--EDFNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDY 214 (379)
Q Consensus 143 ~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~--i~G~g--~~~~~l~~~~~~~~l--~v~~~g~~~~~~--~~~~~~ 214 (379)
.++|.+--...|..+.+++++.++.++.|+..++ +.|++ .....+++ +.+.|+ ++.|.|.++..+ ..|+.+
T Consensus 441 ~v~Fg~fn~~~Ki~p~~l~~WarIL~~vP~s~L~l~~~g~~~g~~~~~~~~-~~~~GI~~Rv~F~g~~p~~e~la~y~~a 519 (631)
T 3q3e_A 441 VVNIGIASTTMKLNPYFLEALKAIRDRAKVKVHFHFALGQSNGITHPYVER-FIKSYLGDSATAHPHSPYHQYLRILHNC 519 (631)
T ss_dssp EEEEEEEECSTTCCHHHHHHHHHHHHHCSSEEEEEEEESSCCGGGHHHHHH-HHHHHHGGGEEEECCCCHHHHHHHHHTC
T ss_pred eEEEEECCccccCCHHHHHHHHHHHHhCCCcEEEEEecCCCchhhHHHHHH-HHHcCCCccEEEcCCCCHHHHHHHHhcC
Confidence 3444444456899999999999999998986554 36743 33333333 334444 788889999877 899999
Q ss_pred CEEEecCCCCcchhHHHHHHHcCCeEEecCCCc-cccc-----c-cCCCE-EEeCCHHHHHHHHHHHHhCCCC
Q 016975 215 KVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFF-----K-QFPNC-RTYDDRNGFVEATLKALAEEPA 279 (379)
Q Consensus 215 dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-~e~i-----~-~~~~g-~~~~~~~~l~~~i~~~l~~~~~ 279 (379)
|+|+.|+.+.| |++++|||+||+|||+..-+. ..-+ . -+-.+ ++.+|.+++++...++.+|++.
T Consensus 520 DIfLDpfpy~G-gtTtlEALwmGVPVVTl~G~~~asRvgaSlL~~~GLpE~LIA~d~eeYv~~Av~La~D~~~ 591 (631)
T 3q3e_A 520 DMMVNPFPFGN-TNGIIDMVTLGLVGVCKTGAEVHEHIDEGLFKRLGLPEWLIANTVDEYVERAVRLAENHQE 591 (631)
T ss_dssp SEEECCSSSCC-SHHHHHHHHTTCCEEEECCSSHHHHHHHHHHHHTTCCGGGEESSHHHHHHHHHHHHHCHHH
T ss_pred cEEEeCCcccC-ChHHHHHHHcCCCEEeccCCcHHHHhHHHHHHhcCCCcceecCCHHHHHHHHHHHhCCHHH
Confidence 99999997755 999999999999999976533 2222 1 23344 4777999999999999998765
No 43
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=99.05 E-value=6e-10 Score=92.55 Aligned_cols=120 Identities=14% Similarity=0.105 Sum_probs=92.1
Q ss_pred cceEEEEEecc---cccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHH--hhcC
Q 016975 141 AKGAYYIGKMV---WSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIF--HDYK 215 (379)
Q Consensus 141 ~~~il~vgrl~---~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~--~~~d 215 (379)
..+++++|++. ..|++..+++++..+ +.++++++++...+ .+..++.+.|++++. +++ ..||
T Consensus 22 ~~vlv~~Gs~~~~~~~~~~~~~~~al~~~-----~~~~~~~~g~~~~~-------~~~~~v~~~~~~~~~-~~l~~~~ad 88 (170)
T 2o6l_A 22 GVVVFSLGSMVSNMTEERANVIASALAQI-----PQKVLWRFDGNKPD-------TLGLNTRLYKWIPQN-DLLGHPKTR 88 (170)
T ss_dssp CEEEEECCSCCTTCCHHHHHHHHHHHTTS-----SSEEEEECCSSCCT-------TCCTTEEEESSCCHH-HHHTSTTEE
T ss_pred CEEEEECCCCcccCCHHHHHHHHHHHHhC-----CCeEEEEECCcCcc-------cCCCcEEEecCCCHH-HHhcCCCcC
Confidence 45788899885 667888888887543 36777777655422 234478999999884 466 8899
Q ss_pred EEEecCCCCcchhHHHHHHHcCCeEEecCCCc-----ccccccCCCEEEeC----CHHHHHHHHHHHHhCC
Q 016975 216 VFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----DRNGFVEATLKALAEE 277 (379)
Q Consensus 216 v~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-----~e~i~~~~~g~~~~----~~~~l~~~i~~~l~~~ 277 (379)
++|.. +-+.++.|||++|+|+|+..... .+.+.+...|+.++ ++++++++|.++++++
T Consensus 89 ~~I~~----~G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~ 155 (170)
T 2o6l_A 89 AFITH----GGANGIYEAIYHGIPMVGIPLFADQPDNIAHMKARGAAVRVDFNTMSSTDLLNALKRVINDP 155 (170)
T ss_dssp EEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHCH
T ss_pred EEEEc----CCccHHHHHHHcCCCEEeccchhhHHHHHHHHHHcCCeEEeccccCCHHHHHHHHHHHHcCH
Confidence 99974 34689999999999999998842 44677778898887 8899999999999874
No 44
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=98.87 E-value=2.5e-09 Score=102.77 Aligned_cols=149 Identities=11% Similarity=-0.012 Sum_probs=106.4
Q ss_pred cceEEEEEeccc-----ccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcC
Q 016975 141 AKGAYYIGKMVW-----SKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYK 215 (379)
Q Consensus 141 ~~~il~vgrl~~-----~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~d 215 (379)
..+++++|++.. .|.+..+++++..+ ++++++.+++++.+.++ .+..++.+.+++++ .++|..||
T Consensus 268 ~~v~v~~Gs~~~~~~~~~~~~~~~~~al~~~-----~~~~v~~~g~~~~~~l~----~~~~~v~~~~~~~~-~~ll~~ad 337 (441)
T 2yjn_A 268 RRVCLTLGISSRENSIGQVSIEELLGAVGDV-----DAEIIATFDAQQLEGVA----NIPDNVRTVGFVPM-HALLPTCA 337 (441)
T ss_dssp CEEEEEC----------CCSTTTTHHHHHTS-----SSEEEECCCTTTTSSCS----SCCSSEEECCSCCH-HHHGGGCS
T ss_pred CEEEEECCCCcccccChHHHHHHHHHHHHcC-----CCEEEEEECCcchhhhc----cCCCCEEEecCCCH-HHHHhhCC
Confidence 346778888865 48888889888653 57888877665533332 23347889999987 56899999
Q ss_pred EEEecCCCCcchhHHHHHHHcCCeEEecCCCc-----ccccccCCCEEEeC----CHHHHHHHHHHHHhCCCC--CCcH-
Q 016975 216 VFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----DRNGFVEATLKALAEEPA--LPTE- 283 (379)
Q Consensus 216 v~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-----~e~i~~~~~g~~~~----~~~~l~~~i~~~l~~~~~--~~~~- 283 (379)
++|.. +.+.++.|||++|+|+|+..... .+.+.+...|+.++ ++++++++|.++++++.. .+.+
T Consensus 338 ~~V~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~ 413 (441)
T 2yjn_A 338 ATVHH----GGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIALPVPELTPDQLRESVKRVLDDPAHRAGAARM 413 (441)
T ss_dssp EEEEC----CCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEECCTTTCCHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred EEEEC----CCHHHHHHHHHhCCCEEEeCCcccHHHHHHHHHHcCCEEEcccccCCHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99974 34678999999999999998843 34566667888876 789999999999987653 2222
Q ss_pred --HHHhcCCHHHHHHHHHHHHh
Q 016975 284 --AQRHQLSWESATERFLQVAE 303 (379)
Q Consensus 284 --~~~~~~sw~~~~~~~~~~~~ 303 (379)
.......++.+++.+.+++.
T Consensus 414 ~~~~~~~~~~~~~~~~i~~~~~ 435 (441)
T 2yjn_A 414 RDDMLAEPSPAEVVGICEELAA 435 (441)
T ss_dssp HHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHH
Confidence 23366788888888877764
No 45
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=98.66 E-value=5.4e-07 Score=90.17 Aligned_cols=165 Identities=12% Similarity=-0.011 Sum_probs=114.7
Q ss_pred CCCcceEEEEEecccccCHHH-HHHHHHHhHh--hc-----CCcEEEEEcCCcC--hHH------HHHHHH------hcC
Q 016975 138 HAFAKGAYYIGKMVWSKGYKE-LLELLDDHQK--EL-----AGLEVDLYGNGED--FNQ------IQEAAE------KLK 195 (379)
Q Consensus 138 ~~~~~~il~vgrl~~~Kg~~~-li~a~~~l~~--~~-----~~~~l~i~G~g~~--~~~------l~~~~~------~~~ 195 (379)
.++.+.++++.|+...|+.+. ++..+..+.+ .. .+++++|.|.+.. ... +...++ +.+
T Consensus 513 dpd~l~~~~vkRlheYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIk~i~~va~~in~dp~~~ 592 (796)
T 2c4m_A 513 DPESIFDVQIKRLHEYKRQLMNALYVLDLYFRIKEDGLTDIPARTVIFGAKAAPGYVRAKAIIKLINSIADLVNNDPEVS 592 (796)
T ss_dssp CTTSEEEEEECCCCGGGTHHHHHHHHHHHHHHHHTSCCCSSCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHTCTTTT
T ss_pred CCCCcEEEEeecchhhcccCEeHHHHHHHHHHHhhCCCCCCCCeEEEEEecCCHhHHHHHHHHHHHHHHHHHhccccccC
Confidence 567889999999999999999 8888887763 22 3589999997664 111 344444 344
Q ss_pred C--eeEEecCCCCHH--HHHhhcCEEEecCC--CCcchhHHHHHHHcCCeEEecCCCc-ccccc--cCCCEEEeC-CHHH
Q 016975 196 I--VVRVYPGRDHAD--LIFHDYKVFLNPST--TDVVCTTTAEALAMGKIVVCANHPS-NDFFK--QFPNCRTYD-DRNG 265 (379)
Q Consensus 196 l--~v~~~g~~~~~~--~~~~~~dv~v~ps~--~E~~~~~~~EAma~G~PVI~t~~g~-~e~i~--~~~~g~~~~-~~~~ 265 (379)
. .|.|+...+-.- .++..||++++||+ .|+.|+.=+=||..|.+.|+|-.|. .|+.. ...||+++. +.++
T Consensus 593 ~~lKVvFl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLDGanvEi~e~vG~~NgF~FG~~~~e 672 (796)
T 2c4m_A 593 PLLKVVFVENYNVSPAEHILPASDVSEQISTAGKEASGTSNMKFMMNGALTLGTMDGANVEIVDSVGEENAYIFGARVEE 672 (796)
T ss_dssp TTEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCHHHHHHHHTTCEEEEESSTHHHHHHHHHCGGGSEEESCCTTT
T ss_pred CceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeEEeccCCeEeehhhhcCCCcEEEecCchhh
Confidence 3 677776654444 99999999999999 8999999999999999999999887 45433 246999988 4443
Q ss_pred HHHHH------HHHHhCCCCCCcH----HHHhcCCHHHHHHHHHHHHhcc
Q 016975 266 FVEAT------LKALAEEPALPTE----AQRHQLSWESATERFLQVAELD 305 (379)
Q Consensus 266 l~~~i------~~~l~~~~~~~~~----~~~~~~sw~~~~~~~~~~~~~~ 305 (379)
..+-. .-.-.++ . +.+ .....|||+.. ..|.++|+..
T Consensus 673 v~~l~~~y~a~~~y~~~~-~-~~~vvd~~~~g~fs~~~~-~~y~~Ly~~L 719 (796)
T 2c4m_A 673 LPALRESYKPYELYETVP-G-LKRALDALDNGTLNDNNS-GLFYDLKHSL 719 (796)
T ss_dssp HHHHHHTCCHHHHHHHST-T-HHHHHHTTTSSSSCCTTC-CHHHHHHHHH
T ss_pred HHHHHHhhChHHHhhcCH-H-HHHHHHHHHcCCCCCCCH-HHHHHHHHHH
Confidence 32211 1111222 1 211 11267888766 6688888754
No 46
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=98.56 E-value=2.8e-07 Score=87.80 Aligned_cols=126 Identities=14% Similarity=0.039 Sum_probs=88.6
Q ss_pred cceEEEEEecccccCHHHHHHHHHHhHhhcCCcEE-EEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEe
Q 016975 141 AKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEV-DLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLN 219 (379)
Q Consensus 141 ~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l-~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ 219 (379)
..++++.|+.. .+..+.+.+++..+.+ .++++ +++|.+.+.+.+. .+..++.+.+++++. ++|..||+||.
T Consensus 256 ~~v~v~~Gs~~-~~~~~~~~~~~~al~~--~~~~~~~~~g~~~~~~~~~----~~~~~v~~~~~~~~~-~~l~~~d~~v~ 327 (424)
T 2iya_A 256 PVLLIALGSAF-TDHLDFYRTCLSAVDG--LDWHVVLSVGRFVDPADLG----EVPPNVEVHQWVPQL-DILTKASAFIT 327 (424)
T ss_dssp CEEEEECCSSS-CCCHHHHHHHHHHHTT--CSSEEEEECCTTSCGGGGC----SCCTTEEEESSCCHH-HHHTTCSEEEE
T ss_pred CEEEEEcCCCC-cchHHHHHHHHHHHhc--CCcEEEEEECCcCChHHhc----cCCCCeEEecCCCHH-HHHhhCCEEEE
Confidence 44566778876 3343444344443332 35667 4578776544332 234478899999877 69999999986
Q ss_pred cCCCCcchhHHHHHHHcCCeEEecCCCc-----ccccccCCCEEEeC----CHHHHHHHHHHHHhCCC
Q 016975 220 PSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----DRNGFVEATLKALAEEP 278 (379)
Q Consensus 220 ps~~E~~~~~~~EAma~G~PVI~t~~g~-----~e~i~~~~~g~~~~----~~~~l~~~i~~~l~~~~ 278 (379)
.+ -.++++||+++|+|+|+..... .+.+.+...|+.++ ++++++++|.++++++.
T Consensus 328 ~~----G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~ 391 (424)
T 2iya_A 328 HA----GMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHIPRDQVTAEKLREAVLAVASDPG 391 (424)
T ss_dssp CC----CHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEECCGGGCCHHHHHHHHHHHHHCHH
T ss_pred CC----chhHHHHHHHcCCCEEEecCccchHHHHHHHHHCCCEEEcCcCCCCHHHHHHHHHHHHcCHH
Confidence 43 3478999999999999998743 33556667888776 88999999999998754
No 47
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=98.46 E-value=1.6e-07 Score=88.55 Aligned_cols=126 Identities=18% Similarity=0.104 Sum_probs=81.1
Q ss_pred ceEEEEEeccccc-CHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEec
Q 016975 142 KGAYYIGKMVWSK-GYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNP 220 (379)
Q Consensus 142 ~~il~vgrl~~~K-g~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~p 220 (379)
.+++..|++...+ +.+.+.+++..+.+ .+..+++.+.+.+.+. ...+..++.+.+++++.+ +|..+|+||.-
T Consensus 239 ~v~vs~Gs~~~~~~~~~~~~~~~~~l~~--~~~~~v~~~~~~~~~~----~~~~~~~v~~~~~~p~~~-lL~~~~~~v~h 311 (400)
T 4amg_A 239 RIAVTLGSIDALSGGIAKLAPLFSEVAD--VDAEFVLTLGGGDLAL----LGELPANVRVVEWIPLGA-LLETCDAIIHH 311 (400)
T ss_dssp EEEECCCSCC--CCSSSTTHHHHHHGGG--SSSEEEEECCTTCCCC----CCCCCTTEEEECCCCHHH-HHTTCSEEEEC
T ss_pred EEEEeCCcccccCccHHHHHHHHHHhhc--cCceEEEEecCccccc----cccCCCCEEEEeecCHHH-Hhhhhhheecc
Confidence 3455667765544 33444444444433 3566666654443221 112333788888887654 88999999843
Q ss_pred CCCCcchhHHHHHHHcCCeEEecCCCc-----ccccccCCCEEEeCCHHHHHHHHHHHHhCCC
Q 016975 221 STTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYDDRNGFVEATLKALAEEP 278 (379)
Q Consensus 221 s~~E~~~~~~~EAma~G~PVI~t~~g~-----~e~i~~~~~g~~~~~~~~l~~~i~~~l~~~~ 278 (379)
+-.+++.|||++|+|+|+....+ .+.+.+...|+..++.+..+++|.++++|+.
T Consensus 312 ----~G~~s~~Eal~~GvP~v~~P~~~dQ~~na~~v~~~G~g~~l~~~~~~~~al~~lL~d~~ 370 (400)
T 4amg_A 312 ----GGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLGIGFDAEAGSLGAEQCRRLLDDAG 370 (400)
T ss_dssp ----CCHHHHHHHHHHTCCEEECCC---CHHHHHHHHHHTSEEECCTTTCSHHHHHHHHHCHH
T ss_pred ----CCccHHHHHHHhCCCEEEecCcccHHHHHHHHHHCCCEEEcCCCCchHHHHHHHHcCHH
Confidence 34568999999999999987733 3345566778888877777889999998754
No 48
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Probab=98.44 E-value=9.6e-07 Score=88.72 Aligned_cols=132 Identities=9% Similarity=-0.017 Sum_probs=99.5
Q ss_pred CCCcceEEEEEecccccCHHHH-HHHHHHhHh--hcC-----CcEEEEEcCCcC--hH------HHHHHHHhc------C
Q 016975 138 HAFAKGAYYIGKMVWSKGYKEL-LELLDDHQK--ELA-----GLEVDLYGNGED--FN------QIQEAAEKL------K 195 (379)
Q Consensus 138 ~~~~~~il~vgrl~~~Kg~~~l-i~a~~~l~~--~~~-----~~~l~i~G~g~~--~~------~l~~~~~~~------~ 195 (379)
.++.+.++++.|+...|+.+++ +..+..+.+ ..| +++++|.|.+.. .. .+...++.. +
T Consensus 547 dpd~l~~g~vkRl~eYKRq~L~~l~~i~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIkli~~va~~in~Dp~v~ 626 (824)
T 2gj4_A 547 NPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKKEPNKFVVPRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVG 626 (824)
T ss_dssp CTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHCTTSCCCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCTTTG
T ss_pred CCCcceEeeeecchhhcchhhHHHHHHHHHHHHHhCCCCCCCCEEEEEEEeCCHhHHHHHHHHHHHHHHHHHhccCcccC
Confidence 4677899999999999999997 777777742 233 578999997664 11 134444432 2
Q ss_pred --CeeEEecCCCCHH--HHHhhcCEEEecCC--CCcchhHHHHHHHcCCeEEecCCCc-ccccc--cCCCEEEeC-CHHH
Q 016975 196 --IVVRVYPGRDHAD--LIFHDYKVFLNPST--TDVVCTTTAEALAMGKIVVCANHPS-NDFFK--QFPNCRTYD-DRNG 265 (379)
Q Consensus 196 --l~v~~~g~~~~~~--~~~~~~dv~v~ps~--~E~~~~~~~EAma~G~PVI~t~~g~-~e~i~--~~~~g~~~~-~~~~ 265 (379)
+.|.|+...+-.- .++..||++++||+ .|+.|+.=+=||..|.+.|+|-.|. .|+.. ...||+++. .+++
T Consensus 627 ~~lKVvFl~nYdvslA~~I~~gaDv~l~~S~ag~EAsGTs~MKamlNGaLtigtlDGanvEi~e~vG~~Ngf~FG~~~~e 706 (824)
T 2gj4_A 627 DRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVED 706 (824)
T ss_dssp GGEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCSHHHHHHHTTCEEEECSCTTHHHHHHHHCGGGSEECSCCHHH
T ss_pred CceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCceEEEEecCccchhhhccCCCCEEEeCCcHHH
Confidence 2677776654444 99999999999999 8999999999999999999999987 45543 457899999 7666
Q ss_pred HHHHH
Q 016975 266 FVEAT 270 (379)
Q Consensus 266 l~~~i 270 (379)
+ .++
T Consensus 707 v-~~l 710 (824)
T 2gj4_A 707 V-DRL 710 (824)
T ss_dssp H-HHH
T ss_pred H-HHH
Confidence 6 444
No 49
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Probab=98.43 E-value=6e-07 Score=89.86 Aligned_cols=167 Identities=13% Similarity=-0.010 Sum_probs=115.6
Q ss_pred CCCcceEEEEEecccccCHHH-HHHHHHHhHh--hc-----CCcEEEEEcCCcC--hHH------HHHHHH------hcC
Q 016975 138 HAFAKGAYYIGKMVWSKGYKE-LLELLDDHQK--EL-----AGLEVDLYGNGED--FNQ------IQEAAE------KLK 195 (379)
Q Consensus 138 ~~~~~~il~vgrl~~~Kg~~~-li~a~~~l~~--~~-----~~~~l~i~G~g~~--~~~------l~~~~~------~~~ 195 (379)
.++.+.++++.|+...|+.++ ++..+..+.+ .. .+++++|.|.+.. ... +...++ +.+
T Consensus 523 dpd~l~~~~vkRl~eYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIk~i~~va~~in~Dp~~~ 602 (796)
T 1l5w_A 523 NPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVADVINNDPLVG 602 (796)
T ss_dssp CTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHTCTTCCCCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHTCTTTG
T ss_pred CCCcceEeeeecchhhcccCEeHHHHHHHHHHHhcCCCCCCCCeEEEEEecCChhHHHHHHHHHHHHHHHHHhccccccC
Confidence 467789999999999999999 8888877753 12 3589999997664 111 333443 333
Q ss_pred C--eeEEecCCCCHH--HHHhhcCEEEecCC--CCcchhHHHHHHHcCCeEEecCCCc-ccccc--cCCCEEEeC-CHHH
Q 016975 196 I--VVRVYPGRDHAD--LIFHDYKVFLNPST--TDVVCTTTAEALAMGKIVVCANHPS-NDFFK--QFPNCRTYD-DRNG 265 (379)
Q Consensus 196 l--~v~~~g~~~~~~--~~~~~~dv~v~ps~--~E~~~~~~~EAma~G~PVI~t~~g~-~e~i~--~~~~g~~~~-~~~~ 265 (379)
. .|.|+...+-.- .++..||++++||+ .|+.|+.=+=||..|.+.|+|-.|. .|+.. ...||+++. ++++
T Consensus 603 ~~lKVvfl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLDGanvEi~e~vG~~NgF~FG~~~~e 682 (796)
T 1l5w_A 603 DKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEKVGEENIFIFGHTVEQ 682 (796)
T ss_dssp GGEEEEECSSCCHHHHHHHGGGCSEEEECCCTTTCCCCSHHHHHHHTTCEEEECSCTTHHHHHHHHCGGGSEECSCCHHH
T ss_pred CceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeeecCcCCeeeehhhccCCCcEEEecCCHHH
Confidence 3 577776554444 99999999999999 8999999999999999999998887 55433 246999999 7777
Q ss_pred HHHHHHH------HHhCCCC--C-CcHHHHhcCCHHHHHHHHHHHHhcc
Q 016975 266 FVEATLK------ALAEEPA--L-PTEAQRHQLSWESATERFLQVAELD 305 (379)
Q Consensus 266 l~~~i~~------~l~~~~~--~-~~~~~~~~~sw~~~~~~~~~~~~~~ 305 (379)
+.+.-.. ...+.+. + +.......|||+.. ..|.++|+..
T Consensus 683 v~~l~~~~y~a~~~y~~~~~~~~vvd~~~~g~fs~~~~-~~y~~Ly~~L 730 (796)
T 1l5w_A 683 VKAILAKGYDPVKWRKKDKVLDAVLKELESGKYSDGDK-HAFDQMLHSI 730 (796)
T ss_dssp HHHHHHHCCCHHHHHHHCHHHHHHHHHHHHTTTTTTCT-TTTHHHHHHT
T ss_pred HHHHHHcccCHHHHhhcCHHHHHHHHHHHcCCCCCCcH-HHHHHHHHHH
Confidence 6632211 1111111 0 11122267888764 6678888753
No 50
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=98.42 E-value=7.2e-07 Score=84.57 Aligned_cols=147 Identities=13% Similarity=0.038 Sum_probs=98.6
Q ss_pred cceEEEEEecc-cccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEe
Q 016975 141 AKGAYYIGKMV-WSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLN 219 (379)
Q Consensus 141 ~~~il~vgrl~-~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ 219 (379)
+.++++.|++. ..+.+..+++++..+ ++++++.+++.+.... +...++.+.+++++ .+++..+|++|.
T Consensus 222 ~~Vlv~~Gs~~~~~~~~~~~~~al~~~-----~~~vv~~~g~~~~~~~-----~~~~~v~~~~~~~~-~~ll~~~d~~v~ 290 (404)
T 3h4t_A 222 PPVYVGFGSGPAPAEAARVAIEAVRAQ-----GRRVVLSSGWAGLGRI-----DEGDDCLVVGEVNH-QVLFGRVAAVVH 290 (404)
T ss_dssp CCEEECCTTSCCCTTHHHHHHHHHHHT-----TCCEEEECTTTTCCCS-----SCCTTEEEESSCCH-HHHGGGSSEEEE
T ss_pred CeEEEECCCCCCcHHHHHHHHHHHHhC-----CCEEEEEeCCcccccc-----cCCCCEEEecCCCH-HHHHhhCcEEEE
Confidence 44667778887 666677777777654 4666666443332111 22348888999887 569999999996
Q ss_pred cCCCCcchhHHHHHHHcCCeEEecCCCc-----ccccccCCCEEEeC----CHHHHHHHHHHHHhCCCC--CCcHHHH--
Q 016975 220 PSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----DRNGFVEATLKALAEEPA--LPTEAQR-- 286 (379)
Q Consensus 220 ps~~E~~~~~~~EAma~G~PVI~t~~g~-----~e~i~~~~~g~~~~----~~~~l~~~i~~~l~~~~~--~~~~~~~-- 286 (379)
.+ -..++.||+++|+|+|+...++ .+.+.....|...+ +++++.+++.++++ +.. .+.+...
T Consensus 291 ~g----G~~t~~Eal~~GvP~v~~p~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~-~~~~~~~~~~~~~~ 365 (404)
T 3h4t_A 291 HG----GAGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGVGVAHDGPTPTVESLSAALATALT-PGIRARAAAVAGTI 365 (404)
T ss_dssp CC----CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHHHTS-HHHHHHHHHHHTTC
T ss_pred CC----cHHHHHHHHHcCCCEEEcCCcccHHHHHHHHHHCCCEeccCcCCCCHHHHHHHHHHHhC-HHHHHHHHHHHHHH
Confidence 54 2368899999999999987743 22455666787765 78999999999987 432 1111111
Q ss_pred hcCCHHHHHHHHHHHHh
Q 016975 287 HQLSWESATERFLQVAE 303 (379)
Q Consensus 287 ~~~sw~~~~~~~~~~~~ 303 (379)
..-.++.+++.+++.+.
T Consensus 366 ~~~~~~~~~~~i~~~~~ 382 (404)
T 3h4t_A 366 RTDGTTVAAKLLLEAIS 382 (404)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 11456777777777665
No 51
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=98.29 E-value=6.8e-07 Score=84.99 Aligned_cols=120 Identities=13% Similarity=0.057 Sum_probs=86.1
Q ss_pred cceEEEEEec-ccccCHHHHHHHHHHhHhhcCCcEEEEE-cCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEE
Q 016975 141 AKGAYYIGKM-VWSKGYKELLELLDDHQKELAGLEVDLY-GNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFL 218 (379)
Q Consensus 141 ~~~il~vgrl-~~~Kg~~~li~a~~~l~~~~~~~~l~i~-G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v 218 (379)
..++++.|++ ...+..+.+++++..+ +.+++++ |.+... . .....++.+.+++++. ++|..||+||
T Consensus 239 ~~v~v~~Gs~~~~~~~~~~~~~al~~~-----~~~~v~~~g~~~~~--~----~~~~~~v~~~~~~~~~-~~l~~~d~~v 306 (415)
T 1iir_A 239 PPVYLGFGSLGAPADAVRVAIDAIRAH-----GRRVILSRGWADLV--L----PDDGADCFAIGEVNHQ-VLFGRVAAVI 306 (415)
T ss_dssp CCEEEECC---CCHHHHHHHHHHHHHT-----TCCEEECTTCTTCC--C----SSCGGGEEECSSCCHH-HHGGGSSEEE
T ss_pred CeEEEeCCCCCCcHHHHHHHHHHHHHC-----CCeEEEEeCCCccc--c----cCCCCCEEEeCcCChH-HHHhhCCEEE
Confidence 4567788898 4788888888888764 2445554 765432 1 1222378888999875 5889999999
Q ss_pred ecCCCCcchhHHHHHHHcCCeEEecCCCc-----ccccccCCCEEEeC----CHHHHHHHHHHHHhCC
Q 016975 219 NPSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----DRNGFVEATLKALAEE 277 (379)
Q Consensus 219 ~ps~~E~~~~~~~EAma~G~PVI~t~~g~-----~e~i~~~~~g~~~~----~~~~l~~~i~~~l~~~ 277 (379)
..+ -.+++.|||++|+|+|+..... .+.+.+...|+.++ ++++++++|.++ +++
T Consensus 307 ~~~----G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~l-~~~ 369 (415)
T 1iir_A 307 HHG----GAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDSLSAALATA-LTP 369 (415)
T ss_dssp ECC----CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHHH-TSH
T ss_pred eCC----ChhHHHHHHHcCCCEEECCCCCccHHHHHHHHHCCCcccCCcCCCCHHHHHHHHHHH-cCH
Confidence 753 3479999999999999998733 34566667888775 789999999998 653
No 52
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=98.09 E-value=2.3e-06 Score=81.26 Aligned_cols=121 Identities=12% Similarity=-0.004 Sum_probs=85.5
Q ss_pred cceEEEEEecc---cccCHHHHHHHHHHhHhhcCCcEEEEE-cCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCE
Q 016975 141 AKGAYYIGKMV---WSKGYKELLELLDDHQKELAGLEVDLY-GNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKV 216 (379)
Q Consensus 141 ~~~il~vgrl~---~~Kg~~~li~a~~~l~~~~~~~~l~i~-G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv 216 (379)
..++++.|+.. ..+.+..+++++..+ +++++++ |.+... . .....++.+.+++++ .++|..||+
T Consensus 238 ~~v~v~~Gs~~~~~~~~~~~~~~~al~~~-----~~~~v~~~g~~~~~--~----~~~~~~v~~~~~~~~-~~ll~~~d~ 305 (416)
T 1rrv_A 238 PPVHIGFGSSSGRGIADAAKVAVEAIRAQ-----GRRVILSRGWTELV--L----PDDRDDCFAIDEVNF-QALFRRVAA 305 (416)
T ss_dssp CCEEECCTTCCSHHHHHHHHHHHHHHHHT-----TCCEEEECTTTTCC--C----SCCCTTEEEESSCCH-HHHGGGSSE
T ss_pred CeEEEecCCCCccChHHHHHHHHHHHHHC-----CCeEEEEeCCcccc--c----cCCCCCEEEeccCCh-HHHhccCCE
Confidence 44666778874 466777777777654 3456554 765431 1 223347888899874 468999999
Q ss_pred EEecCCCCcchhHHHHHHHcCCeEEecCCCc-----ccccccCCCEEEeC----CHHHHHHHHHHHHhCCC
Q 016975 217 FLNPSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----DRNGFVEATLKALAEEP 278 (379)
Q Consensus 217 ~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-----~e~i~~~~~g~~~~----~~~~l~~~i~~~l~~~~ 278 (379)
||.- +-..++.||+++|+|+|+..... .+.+.+...|+..+ ++++++++|.++ +++.
T Consensus 306 ~v~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~l-~~~~ 371 (416)
T 1rrv_A 306 VIHH----GSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPTPTFESLSAALTTV-LAPE 371 (416)
T ss_dssp EEEC----CCHHHHHHHHHHTCCEEECCCSBTHHHHHHHHHHHTSEEECSSSCCCHHHHHHHHHHH-TSHH
T ss_pred EEec----CChhHHHHHHHcCCCEEEccCCCCcHHHHHHHHHCCCccCCCCCCCCHHHHHHHHHHh-hCHH
Confidence 9973 33569999999999999987733 23455667787764 789999999998 6643
No 53
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.05 E-value=2.8e-05 Score=79.06 Aligned_cols=162 Identities=12% Similarity=-0.029 Sum_probs=113.7
Q ss_pred eEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcC-hHHHHHHHHhcCC---eeEEecCCCCHH--HHHhhcCE
Q 016975 143 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED-FNQIQEAAEKLKI---VVRVYPGRDHAD--LIFHDYKV 216 (379)
Q Consensus 143 ~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~l---~v~~~g~~~~~~--~~~~~~dv 216 (379)
.|+|.+=-...|=-...++++.++.++.|+-+|++..+... ...+++.+++.|+ ++.|.+..+..+ ..|+.+|+
T Consensus 523 ~v~f~~fN~~~Ki~p~~~~~W~~IL~~vP~S~L~Ll~~~~~~~~~l~~~~~~~gi~~~r~~f~~~~~~~~~l~~~~~~Di 602 (723)
T 4gyw_A 523 AIVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEPNIQQYAQNMGLPQNRIIFSPVAPKEEHVRRGQLADV 602 (723)
T ss_dssp SEEEECCSCGGGCCHHHHHHHHHHHHHCSSEEEEEEETTGGGHHHHHHHHHHTTCCGGGEEEEECCCHHHHHHHGGGCSE
T ss_pred CEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHHHHHHHhcCCCcCeEEECCCCCHHHHHHHhCCCeE
Confidence 45555544567888899999999999999999988876444 5668888888887 678888888777 88999999
Q ss_pred EEecCCCCcchhHHHHHHHcCCeEEecCCCc------ccccccC-CCEEEeCCHHHHHHHHHHHHhCCCC--CCcHHHH-
Q 016975 217 FLNPSTTDVVCTTTAEALAMGKIVVCANHPS------NDFFKQF-PNCRTYDDRNGFVEATLKALAEEPA--LPTEAQR- 286 (379)
Q Consensus 217 ~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~------~e~i~~~-~~g~~~~~~~~l~~~i~~~l~~~~~--~~~~~~~- 286 (379)
++=|-.+- -++|..||+.||+|||+-.-.. ..++..- -.-++..|.++..+...++-+|+.. .+....+
T Consensus 603 ~LDt~p~~-g~tT~~eal~~GvPvvt~~g~~~~sR~~~s~l~~~gl~e~ia~~~~~Y~~~a~~la~d~~~l~~lr~~l~~ 681 (723)
T 4gyw_A 603 CLDTPLCN-GHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELIAKNRQEYEDIAVKLGTDLEYLKKVRGKVWK 681 (723)
T ss_dssp EECCSSSC-CSHHHHHHHHTTCCEEBCCCSSGGGTHHHHHHHHHTCGGGBCSSHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred EeCCCCcC-CHHHHHHHHHcCCCEEEccCCCccHhHHHHHHHHcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99887664 4789999999999999865311 1122221 1225666889998888887777554 2221111
Q ss_pred -----hcCCHHHHHHHHHHHHhcc
Q 016975 287 -----HQLSWESATERFLQVAELD 305 (379)
Q Consensus 287 -----~~~sw~~~~~~~~~~~~~~ 305 (379)
.-|+-...++.+++.|+..
T Consensus 682 ~~~~s~l~d~~~~~~~le~a~~~~ 705 (723)
T 4gyw_A 682 QRISSPLFNTKQYTMELERLYLQM 705 (723)
T ss_dssp HHHHSSTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCcCcCHHHHHHHHHHHHHHH
Confidence 2455556666666666644
No 54
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=97.44 E-value=0.0003 Score=62.83 Aligned_cols=93 Identities=9% Similarity=0.049 Sum_probs=67.3
Q ss_pred ceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEec
Q 016975 142 KGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNP 220 (379)
Q Consensus 142 ~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~p 220 (379)
.+++++|..+...-...+++++.. . ..+ .++.|.+.. .+++++..++.+ ++++++++++-.++|+.||+.|.+
T Consensus 159 ~ILv~~GG~d~~~l~~~vl~~L~~---~-~~i-~vv~G~~~~~~~~l~~~~~~~~-~v~v~~~~~~m~~~m~~aDlvI~~ 232 (282)
T 3hbm_A 159 DFFICMGGTDIKNLSLQIASELPK---T-KII-SIATSSSNPNLKKLQKFAKLHN-NIRLFIDHENIAKLMNESNKLIIS 232 (282)
T ss_dssp EEEEECCSCCTTCHHHHHHHHSCT---T-SCE-EEEECTTCTTHHHHHHHHHTCS-SEEEEESCSCHHHHHHTEEEEEEE
T ss_pred eEEEEECCCchhhHHHHHHHHhhc---C-CCE-EEEECCCchHHHHHHHHHhhCC-CEEEEeCHHHHHHHHHHCCEEEEC
Confidence 356677876655434445555532 1 244 566776654 677877766544 889999999999999999999984
Q ss_pred CCCCcchhHHHHHHHcCCeEEecCC
Q 016975 221 STTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 221 s~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
-|+|+.|++++|+|.|.-..
T Consensus 233 -----gG~T~~E~~~~g~P~i~ip~ 252 (282)
T 3hbm_A 233 -----ASSLVNEALLLKANFKAICY 252 (282)
T ss_dssp -----SSHHHHHHHHTTCCEEEECC
T ss_pred -----CcHHHHHHHHcCCCEEEEeC
Confidence 25799999999999998654
No 55
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=96.89 E-value=0.003 Score=60.55 Aligned_cols=126 Identities=13% Similarity=0.102 Sum_probs=78.3
Q ss_pred cceEEEEEecccccCHHHHHHHHHHhHhhcCCcE-EEEEcCCcC---hHHHHHHHHhcCCeeEEecCCCCHHHHHh--hc
Q 016975 141 AKGAYYIGKMVWSKGYKELLELLDDHQKELAGLE-VDLYGNGED---FNQIQEAAEKLKIVVRVYPGRDHADLIFH--DY 214 (379)
Q Consensus 141 ~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~-l~i~G~g~~---~~~l~~~~~~~~l~v~~~g~~~~~~~~~~--~~ 214 (379)
..+++..|..... ..+.+.+++..+.+. +++ ++.+|.... .+.+. ++.+.++.+.+++++. +++. ++
T Consensus 272 ~vv~vs~GS~~~~-~~~~~~~~~~~l~~~--~~~~lw~~~~~~~~~l~~~~~---~~~~~~~~v~~w~pq~-~vL~h~~~ 344 (456)
T 2c1x_A 272 SVVYISFGTVTTP-PPAEVVALSEALEAS--RVPFIWSLRDKARVHLPEGFL---EKTRGYGMVVPWAPQA-EVLAHEAV 344 (456)
T ss_dssp CEEEEECCSSCCC-CHHHHHHHHHHHHHH--TCCEEEECCGGGGGGSCTTHH---HHHTTTEEEESCCCHH-HHHTSTTE
T ss_pred ceEEEecCccccC-CHHHHHHHHHHHHhc--CCeEEEEECCcchhhCCHHHH---hhcCCceEEecCCCHH-HHhcCCcC
Confidence 3445556666533 334444444444333 233 445554321 11122 1223477888988876 4777 66
Q ss_pred CEEEecCCCCcchhHHHHHHHcCCeEEecCCCc-----ccccccC-CCEEEeC----CHHHHHHHHHHHHhCC
Q 016975 215 KVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQF-PNCRTYD----DRNGFVEATLKALAEE 277 (379)
Q Consensus 215 dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-----~e~i~~~-~~g~~~~----~~~~l~~~i~~~l~~~ 277 (379)
|+||.= +-.+++.||+++|+|+|+-.... ...+.+. +.|+..+ +.+++.++|.++++++
T Consensus 345 ~~fvth----~G~~S~~Eal~~GvP~i~~P~~~dQ~~Na~~l~~~~g~g~~l~~~~~~~~~l~~~i~~ll~~~ 413 (456)
T 2c1x_A 345 GAFVTH----CGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVFTKSGLMSCFDQILSQE 413 (456)
T ss_dssp EEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECGGGSCCHHHHHHHHHHHHHSH
T ss_pred CEEEec----CCcchHHHHHHhCceEEecCChhhHHHHHHHHHHHhCeEEEecCCCcCHHHHHHHHHHHHCCC
Confidence 788843 34578999999999999998733 2245555 7787765 7899999999999874
No 56
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=96.67 E-value=0.0035 Score=53.75 Aligned_cols=74 Identities=11% Similarity=0.033 Sum_probs=50.1
Q ss_pred CCeeEEecCCCCHHHHHh-hcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc---------ccccccCCCEEEeCCHH
Q 016975 195 KIVVRVYPGRDHADLIFH-DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS---------NDFFKQFPNCRTYDDRN 264 (379)
Q Consensus 195 ~l~v~~~g~~~~~~~~~~-~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~---------~e~i~~~~~g~~~~~~~ 264 (379)
+.++.+++++++-.++|. .||++|.= +-..++.|++++|+|.|.-..+. .+.+.+...++.. +++
T Consensus 113 ~~~v~v~~f~~~m~~~l~~~AdlvIsh----aGagTv~Eal~~G~P~IvVP~~~~~~~HQ~~nA~~l~~~G~~~~~-~~~ 187 (224)
T 2jzc_A 113 KLKVIGFDFSTKMQSIIRDYSDLVISH----AGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVELGYVWSC-APT 187 (224)
T ss_dssp SSEEEECCSSSSHHHHHHHHCSCEEES----SCHHHHHHHHHTTCCCCEECCSSCCCCHHHHHHHHHHHHSCCCEE-CSC
T ss_pred CceEEEeeccchHHHHHHhcCCEEEEC----CcHHHHHHHHHhCCCEEEEcCcccccchHHHHHHHHHHCCCEEEc-CHH
Confidence 346667788888889999 99999954 34678999999999999876532 1123222233333 556
Q ss_pred HHHHHHHHH
Q 016975 265 GFVEATLKA 273 (379)
Q Consensus 265 ~l~~~i~~~ 273 (379)
.+.++|.++
T Consensus 188 ~L~~~i~~l 196 (224)
T 2jzc_A 188 ETGLIAGLR 196 (224)
T ss_dssp TTTHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666665
No 57
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=96.54 E-value=0.014 Score=55.63 Aligned_cols=127 Identities=11% Similarity=0.034 Sum_probs=77.3
Q ss_pred eEEEEEecccccCHHHHHHHHHHhHhhcCCcEEE-EEcCCcChHHHH-HHHHhcCCeeEEecCCCCHHHHHhhcCEEEec
Q 016975 143 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVD-LYGNGEDFNQIQ-EAAEKLKIVVRVYPGRDHADLIFHDYKVFLNP 220 (379)
Q Consensus 143 ~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~-i~G~g~~~~~l~-~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~p 220 (379)
+++..|.... ...+.+.+.+..+.+. +.+++ .+|... .+.+. ...++...++.+.+++++. +++..+++-++-
T Consensus 276 VyvsfGS~~~-~~~~~~~el~~~l~~~--~~~flw~~~~~~-~~~lp~~~~~~~~~~~~vv~w~Pq~-~vL~h~~v~~fv 350 (454)
T 3hbf_A 276 VYISFGSVVT-PPPHELTALAESLEEC--GFPFIWSFRGDP-KEKLPKGFLERTKTKGKIVAWAPQV-EILKHSSVGVFL 350 (454)
T ss_dssp EEEECCSSCC-CCHHHHHHHHHHHHHH--CCCEEEECCSCH-HHHSCTTHHHHTTTTEEEESSCCHH-HHHHSTTEEEEE
T ss_pred EEEecCCCCc-CCHHHHHHHHHHHHhC--CCeEEEEeCCcc-hhcCCHhHHhhcCCceEEEeeCCHH-HHHhhcCcCeEE
Confidence 4455566543 2334444444444433 33444 445432 11111 1122333477888988875 688999954444
Q ss_pred CCCCcchhHHHHHHHcCCeEEecCCCc-----ccccccC-CCEEEeC----CHHHHHHHHHHHHhC
Q 016975 221 STTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQF-PNCRTYD----DRNGFVEATLKALAE 276 (379)
Q Consensus 221 s~~E~~~~~~~EAma~G~PVI~t~~g~-----~e~i~~~-~~g~~~~----~~~~l~~~i~~~l~~ 276 (379)
++ +--.+++||+++|+|+|+-...+ ...+.+. +.|+..+ +.+++.+++.+++++
T Consensus 351 tH--~G~~S~~Eal~~GvP~i~~P~~~DQ~~Na~~v~~~~g~Gv~l~~~~~~~~~l~~av~~ll~~ 414 (454)
T 3hbf_A 351 TH--SGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLTKESIKKALELTMSS 414 (454)
T ss_dssp EC--CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTSCSEEECGGGSCCHHHHHHHHHHHHSS
T ss_pred ec--CCcchHHHHHHcCCCEecCcccccHHHHHHHHHHhhCeeEEecCCCCCHHHHHHHHHHHHCC
Confidence 33 23467999999999999988733 2245553 7787765 789999999999975
No 58
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=96.46 E-value=0.0075 Score=55.24 Aligned_cols=97 Identities=16% Similarity=0.181 Sum_probs=65.0
Q ss_pred cceEEEEEe-cccccCHH--HHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcC----Cee-EEecCCCCHH--HH
Q 016975 141 AKGAYYIGK-MVWSKGYK--ELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLK----IVV-RVYPGRDHAD--LI 210 (379)
Q Consensus 141 ~~~il~vgr-l~~~Kg~~--~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~----l~v-~~~g~~~~~~--~~ 210 (379)
+.+++..|. ..+.|.+. .+.+++..+.++ ++++++.|...+.+..++..+..+ .++ .+.|..+-.+ .+
T Consensus 181 ~~i~l~pga~~~~~k~wp~~~~~~l~~~L~~~--~~~vvl~g~~~e~~~~~~i~~~~~~~~~~~~~~l~g~~sl~e~~al 258 (348)
T 1psw_A 181 PMIGFCPGAEFGPAKRWPHYHYAELAKQLIDE--GYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLDQAVIL 258 (348)
T ss_dssp CEEEEECCCTTCGGGSCCHHHHHHHHHHHHHT--TCEEEECCCGGGHHHHHHHHTTSCHHHHTTEEECTTTSCHHHHHHH
T ss_pred cEEEEECCCCccccCCCCHHHHHHHHHHHHHC--CCeEEEEeChhhHHHHHHHHHhhhhccccceEeccCcCCHHHHHHH
Confidence 345566665 44556654 788888877665 788999997776555555544332 123 4457665555 99
Q ss_pred HhhcCEEEecCCCCcchhHHHHHHHcCCeEEecC
Q 016975 211 FHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCAN 244 (379)
Q Consensus 211 ~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~ 244 (379)
++.||++|-.. .|. +-.|+|+|+|+|+--
T Consensus 259 i~~a~l~I~~D----sg~-~HlAaa~g~P~v~lf 287 (348)
T 1psw_A 259 IAACKAIVTND----SGL-MHVAAALNRPLVALY 287 (348)
T ss_dssp HHTSSEEEEES----SHH-HHHHHHTTCCEEEEE
T ss_pred HHhCCEEEecC----CHH-HHHHHHcCCCEEEEE
Confidence 99999999874 233 333999999999854
No 59
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=96.32 E-value=0.031 Score=53.53 Aligned_cols=127 Identities=9% Similarity=-0.043 Sum_probs=76.3
Q ss_pred cceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEE-EEcCC--cChHHHHHHHHhcCCeeEEecCCCCHHHHHh--hcC
Q 016975 141 AKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVD-LYGNG--EDFNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYK 215 (379)
Q Consensus 141 ~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~-i~G~g--~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~--~~d 215 (379)
..+++..|.....-+.+.+.+++..+.+. +.+++ ++|.+ ...+.+.+.... ..++.+.+++++.+ +|. .+|
T Consensus 277 ~vv~vs~GS~~~~~~~~~~~~~~~~l~~~--~~~~l~~~~~~~~~l~~~~~~~~~~-~~~~~v~~w~pq~~-vL~h~~~~ 352 (463)
T 2acv_A 277 SVVFLCFGSMGVSFGPSQIREIALGLKHS--GVRFLWSNSAEKKVFPEGFLEWMEL-EGKGMICGWAPQVE-VLAHKAIG 352 (463)
T ss_dssp CEEEEECCSSCCCCCHHHHHHHHHHHHHH--TCEEEEECCCCGGGSCTTHHHHHHH-HCSEEEESSCCHHH-HHHSTTEE
T ss_pred ceEEEEeccccccCCHHHHHHHHHHHHhC--CCcEEEEECCCcccCChhHHHhhcc-CCCEEEEccCCHHH-HhCCCccC
Confidence 34455566665223434444444444332 34554 45543 111223222210 22677888888765 665 567
Q ss_pred EEEecCCCCcchhHHHHHHHcCCeEEecCC-Cc----ccc-cccCCCEEEe---------C-CHHHHHHHHHHHHh
Q 016975 216 VFLNPSTTDVVCTTTAEALAMGKIVVCANH-PS----NDF-FKQFPNCRTY---------D-DRNGFVEATLKALA 275 (379)
Q Consensus 216 v~v~ps~~E~~~~~~~EAma~G~PVI~t~~-g~----~e~-i~~~~~g~~~---------~-~~~~l~~~i~~~l~ 275 (379)
+||.= +-.+++.||+++|+|+|+-.. +. ... +...+.|+.. . +.+++.++|.++++
T Consensus 353 ~fvth----~G~~s~~Eal~~GvP~i~~P~~~dQ~~Na~~lv~~~g~g~~l~~~~~~~~~~~~~~~l~~ai~~ll~ 424 (463)
T 2acv_A 353 GFVSH----CGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMD 424 (463)
T ss_dssp EEEEC----CCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTSCCEEESCSSCCTTCCCCCHHHHHHHHHHHTC
T ss_pred eEEec----CCchhHHHHHHcCCCeeeccchhhhHHHHHHHHHHcCeEEEEecccCCCCccccHHHHHHHHHHHHh
Confidence 88843 245789999999999999988 33 224 4566778766 3 68999999999985
No 60
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=96.21 E-value=0.042 Score=52.84 Aligned_cols=78 Identities=13% Similarity=0.166 Sum_probs=58.5
Q ss_pred CCeeEEecCCCCHHHHHhhcCE--EEecCCCCcchhHHHHHHHcCCeEEecCCCc-----ccccc-cCCCEEEeC---CH
Q 016975 195 KIVVRVYPGRDHADLIFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFK-QFPNCRTYD---DR 263 (379)
Q Consensus 195 ~l~v~~~g~~~~~~~~~~~~dv--~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-----~e~i~-~~~~g~~~~---~~ 263 (379)
..++.+.+++++.+ +|..+++ ||. =+-.+++.||+++|+|+|+-.... ...+. ..+.|+..+ +.
T Consensus 352 ~~~~~v~~~~pq~~-~L~h~~~~~~vt----h~G~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~ 426 (482)
T 2pq6_A 352 ADRGLIASWCPQDK-VLNHPSIGGFLT----HCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDTNVKR 426 (482)
T ss_dssp TTTEEEESCCCHHH-HHTSTTEEEEEE----CCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECCSSCCH
T ss_pred CCCEEEEeecCHHH-HhcCCCCCEEEe----cCCcchHHHHHHcCCCEEecCcccchHHHHHHHHHHhCEEEEECCCCCH
Confidence 34788889888765 8877665 553 234568999999999999998843 22343 556787765 89
Q ss_pred HHHHHHHHHHHhCC
Q 016975 264 NGFVEATLKALAEE 277 (379)
Q Consensus 264 ~~l~~~i~~~l~~~ 277 (379)
+++.++|.+++.++
T Consensus 427 ~~l~~~i~~ll~~~ 440 (482)
T 2pq6_A 427 EELAKLINEVIAGD 440 (482)
T ss_dssp HHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHcCC
Confidence 99999999999864
No 61
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4
Probab=95.70 E-value=0.095 Score=52.88 Aligned_cols=130 Identities=10% Similarity=0.050 Sum_probs=91.9
Q ss_pred CCcceEEEEEecccccCHHH-HHHHHHHh---Hhh-------------cCCcEEEEEcCCc-C---hHH----HHHHHH-
Q 016975 139 AFAKGAYYIGKMVWSKGYKE-LLELLDDH---QKE-------------LAGLEVDLYGNGE-D---FNQ----IQEAAE- 192 (379)
Q Consensus 139 ~~~~~il~vgrl~~~Kg~~~-li~a~~~l---~~~-------------~~~~~l~i~G~g~-~---~~~----l~~~~~- 192 (379)
++...++++-|+...|...+ ++..+..+ +.. ....++++.|.-. . -.. +...++
T Consensus 598 p~sLfdvq~KR~heYKRq~LniL~ii~ry~~Ik~~~~~~~~p~~~~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~ 677 (879)
T 1ygp_A 598 DDTLFDMQVKRIHEYKRQQLNVFGIIYRYLAMKNMLKNGASIEEVARKYPRKVSIFGGKSAPGYYMAKLIIKLINCVADI 677 (879)
T ss_dssp GGCEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHSCCEEEEEECCCCTTCHHHHHHHHHHHHHHHH
T ss_pred CCeeeeeeeehhhHhHHHHHHHHHHHHHHHHHHhCccccCCCcccccCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHH
Confidence 55677888889999999998 56554433 333 2468888888432 2 122 222332
Q ss_pred -----hcC--CeeEEecCC--CCHHHHHhhcCEEEecCCC--CcchhHHHHHHHcCCeEEecCCCc-cccccc--CCCEE
Q 016975 193 -----KLK--IVVRVYPGR--DHADLIFHDYKVFLNPSTT--DVVCTTTAEALAMGKIVVCANHPS-NDFFKQ--FPNCR 258 (379)
Q Consensus 193 -----~~~--l~v~~~g~~--~~~~~~~~~~dv~v~ps~~--E~~~~~~~EAma~G~PVI~t~~g~-~e~i~~--~~~g~ 258 (379)
..+ +.|.|+... .-.+.++..||+-.+.|.. |+.|+.=+=+|.-|.+.|+|-.|. .|+... .+|++
T Consensus 678 iN~Dp~v~~~LKVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMKfalNGaLtlgtlDGanvEi~e~vG~eN~f 757 (879)
T 1ygp_A 678 VNNDESIEHLLKVVFVADYNVSKAEIIIPASDLSEHISTAGTEASGTSNMKFVMNGGLIIGTVDGANVEITREIGEDNVF 757 (879)
T ss_dssp HTTCGGGTTSEEEEEETTCCHHHHHHHGGGCSEEEECCCTTCCSCCHHHHHHHTTTCEEEEESCTHHHHHHHHHCGGGSE
T ss_pred hccChhhCCceEEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCchhhHHHHcCCeeeecccchhHHHHHHcCcccEE
Confidence 122 257777654 4444999999999998875 999999999999999999999988 666543 46999
Q ss_pred EeC-CHHHHHH
Q 016975 259 TYD-DRNGFVE 268 (379)
Q Consensus 259 ~~~-~~~~l~~ 268 (379)
++- +.++..+
T Consensus 758 iFG~~~~ev~~ 768 (879)
T 1ygp_A 758 LFGNLSENVEE 768 (879)
T ss_dssp EESCCHHHHHH
T ss_pred EccCCHHHHHH
Confidence 998 7666544
No 62
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=95.44 E-value=0.089 Score=48.27 Aligned_cols=152 Identities=11% Similarity=0.119 Sum_probs=88.6
Q ss_pred ceEEEEEecccccCH--HHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCee-EEecCCCCHH--HHHhhcCE
Q 016975 142 KGAYYIGKMVWSKGY--KELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVV-RVYPGRDHAD--LIFHDYKV 216 (379)
Q Consensus 142 ~~il~vgrl~~~Kg~--~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v-~~~g~~~~~~--~~~~~~dv 216 (379)
.+++..|.-.+.|.+ +.+.+++..+.++ ++++++.|+..+.+..++..+..+.++ .+.|..+-.+ .+++.||+
T Consensus 187 ~i~i~pga~~~~k~wp~~~~~~l~~~l~~~--g~~vvl~g~~~e~~~~~~i~~~~~~~~~~l~g~~sl~e~~ali~~a~~ 264 (349)
T 3tov_A 187 LIGFNIGSAVPEKRWPAERFAHVADYFGRL--GYKTVFFGGPMDLEMVQPVVEQMETKPIVATGKFQLGPLAAAMNRCNL 264 (349)
T ss_dssp EEEEECCCSSGGGCCCHHHHHHHHHHHHHH--TCEEEECCCTTTHHHHHHHHHTCSSCCEECTTCCCHHHHHHHHHTCSE
T ss_pred EEEEeCCCCCccCCCCHHHHHHHHHHHHhC--CCeEEEEeCcchHHHHHHHHHhcccccEEeeCCCCHHHHHHHHHhCCE
Confidence 344556643345554 5677777777665 678888998777776777666655443 4446665555 99999999
Q ss_pred EEecCCCCcchhHHHHHHHcCCeEEecCCCc-cccccc-CCCEEEeCCHHHHHHHHHHHHhCCCCCCcH-HHHhcCCHHH
Q 016975 217 FLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQ-FPNCRTYDDRNGFVEATLKALAEEPALPTE-AQRHQLSWES 293 (379)
Q Consensus 217 ~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-~e~i~~-~~~g~~~~~~~~l~~~i~~~l~~~~~~~~~-~~~~~~sw~~ 293 (379)
+|-+- + |..-+ |.|+|+|+|+---+. ...... +.+..++.....-. +... -+..-+.+. .-....+-+.
T Consensus 265 ~i~~D---s-G~~Hl-Aaa~g~P~v~lfg~t~p~~~~P~~~~~~vl~~~~~C~-C~~~--~~~~C~~~~~~Cm~~I~~~~ 336 (349)
T 3tov_A 265 LITND---S-GPMHV-GISQGVPIVALYGPSNPFFYGPYQAHAIVLETMDSYE-IGKS--MKKIIKEGNYKGLSVISEEQ 336 (349)
T ss_dssp EEEES---S-HHHHH-HHTTTCCEEEECSSCCHHHHSCTTCSEEEECHHHHHH-HHHH--TTCCCCGGGCSTTTTSCHHH
T ss_pred EEECC---C-CHHHH-HHhcCCCEEEEECCCCccccCCCCCCeEEEeCCCCcC-ccCC--ccCCCCCCccchhhcCCHHH
Confidence 99762 2 44444 999999999964433 333322 23444444222222 2221 001111111 1224677777
Q ss_pred HHHHHHHHHh
Q 016975 294 ATERFLQVAE 303 (379)
Q Consensus 294 ~~~~~~~~~~ 303 (379)
+.+...++.+
T Consensus 337 V~~a~~~lL~ 346 (349)
T 3tov_A 337 VIKAAETLLL 346 (349)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777776654
No 63
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=93.52 E-value=0.21 Score=45.06 Aligned_cols=127 Identities=13% Similarity=0.117 Sum_probs=73.6
Q ss_pred ceEEEEEecccccCHH--HHHHHHHHhHhhcCCcEEEEE-cCCcChHHHHHHHHhcCCeeEEecCCCCHH--HHHhhcCE
Q 016975 142 KGAYYIGKMVWSKGYK--ELLELLDDHQKELAGLEVDLY-GNGEDFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKV 216 (379)
Q Consensus 142 ~~il~vgrl~~~Kg~~--~li~a~~~l~~~~~~~~l~i~-G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~--~~~~~~dv 216 (379)
.+++..|.-.+.|.+. .+.+++..+.+. ++++++. |+..+.+..++..+..+ ++.+.|..+-.+ .+++.||+
T Consensus 180 ~i~l~pga~~~~k~wp~~~~~~l~~~L~~~--~~~vvl~~g~~~e~~~~~~i~~~~~-~~~l~g~~sl~el~ali~~a~l 256 (326)
T 2gt1_A 180 YAVFLHATTRDDKHWPEEHWRELIGLLADS--GIRIKLPWGAPHEEERAKRLAEGFA-YVEVLPKMSLEGVARVLAGAKF 256 (326)
T ss_dssp EEEEECCCSSGGGSCCHHHHHHHHHHTTTT--CCEEEECCSSHHHHHHHHHHHTTCT-TEEECCCCCHHHHHHHHHTCSE
T ss_pred EEEEEeCCCCccccCCHHHHHHHHHHHHHC--CCcEEEecCCHHHHHHHHHHHhhCC-cccccCCCCHHHHHHHHHhCCE
Confidence 3455556434445544 677777776543 6888887 53334444444444333 456667665555 99999999
Q ss_pred EEecCCCCcchhHHHHHHHcCCeEEecCCCc-cccccc-CCCEE-E-------eC-CHHHHHHHHHHHHhC
Q 016975 217 FLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQ-FPNCR-T-------YD-DRNGFVEATLKALAE 276 (379)
Q Consensus 217 ~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-~e~i~~-~~~g~-~-------~~-~~~~l~~~i~~~l~~ 276 (379)
+|-.- .|..-+ |.|+|+|+|+---+. ...... +.+.. + -+ ++++..+++.+++++
T Consensus 257 ~I~~D----SG~~Hl-Aaa~g~P~v~lfg~t~p~~~~P~~~~~~~~~~~~~cm~~I~~~~V~~~i~~~l~~ 322 (326)
T 2gt1_A 257 VVSVD----TGLSHL-TAALDRPNITVYGPTDPGLIGGYGKNQMVCRAPGNELSQLTANAVKQFIEENAEK 322 (326)
T ss_dssp EEEES----SHHHHH-HHHTTCCEEEEESSSCHHHHCCCSSSEEEEECGGGCGGGCCHHHHHHHHHHTTTT
T ss_pred EEecC----CcHHHH-HHHcCCCEEEEECCCChhhcCCCCCCceEecCCcccccCCCHHHHHHHHHHHHHH
Confidence 99763 244444 778999999853222 111111 11111 1 12 677777777776654
No 64
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=90.97 E-value=1.8 Score=41.35 Aligned_cols=76 Identities=7% Similarity=-0.075 Sum_probs=53.7
Q ss_pred eEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc-----cccc-ccCCCEEEeC-------CHH
Q 016975 198 VRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFF-KQFPNCRTYD-------DRN 264 (379)
Q Consensus 198 v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~-----~e~i-~~~~~g~~~~-------~~~ 264 (379)
..+.+++++. +++..+++-++-++ +--++++||+++|+|+|+-.... ...+ ...+.|+..+ +.+
T Consensus 341 ~~v~~w~Pq~-~vL~h~~v~~fvtH--gG~~S~~Eal~~GvP~i~~P~~~DQ~~na~~l~~~~G~g~~l~~~~~~~~~~~ 417 (480)
T 2vch_A 341 FVIPFWAPQA-QVLAHPSTGGFLTH--CGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRRE 417 (480)
T ss_dssp EEEESCCCHH-HHHHSTTEEEEEEC--CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTTCCEECCCCCTTSCCCHH
T ss_pred EEEeCccCHH-HHhCCCCcCeEEec--ccchhHHHHHHcCCCEEeccccccchHHHHHHHHHhCeEEEeecccCCccCHH
Confidence 3444688776 69988885433332 23467999999999999988833 2233 4656776552 679
Q ss_pred HHHHHHHHHHhC
Q 016975 265 GFVEATLKALAE 276 (379)
Q Consensus 265 ~l~~~i~~~l~~ 276 (379)
++.++|.+++.+
T Consensus 418 ~l~~av~~vl~~ 429 (480)
T 2vch_A 418 EVARVVKGLMEG 429 (480)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHhcC
Confidence 999999999975
No 65
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=87.36 E-value=1.1 Score=45.26 Aligned_cols=171 Identities=10% Similarity=-0.043 Sum_probs=90.5
Q ss_pred cceEEEcChhhhhhhhcc--c---eee-cccCCC-C-ccCccc----cHHHhhcCCCCCcceEEEEEecccc----cC--
Q 016975 94 CHKVIRLSAATQEYANSI--I---CNV-HGVNPK-F-LEIGKK----KKEQQQNGTHAFAKGAYYIGKMVWS----KG-- 155 (379)
Q Consensus 94 ~d~vi~~S~~~~~~~~~~--i---~~i-~gvd~~-~-~~~~~~----~~~~~~~~~~~~~~~il~vgrl~~~----Kg-- 155 (379)
.|.+++.|+...+...+. + ..+ .|..-. . +..... .......+..+++++|+|.-..... +|
T Consensus 479 ~D~~~~~s~~~~~~~~~~f~~~~~~i~~~G~PR~D~l~~~~~~~~~~~~~~~~~~~~~~kk~ILyaPT~r~~~~~~~~~~ 558 (729)
T 3l7i_A 479 WDYLISPNRYSTEIFRSAFWMDEERILEIGYPRNDVLVNRANDQEYLDEIRTHLNLPSDKKVIMYAPTWRDDEFVSKGKY 558 (729)
T ss_dssp CSEEEESSHHHHHHHHHHTCCCGGGEEESCCGGGHHHHHSTTCHHHHHHHHHHTTCCSSCEEEEECCCCCGGGCCGGGSS
T ss_pred CCEEEeCCHHHHHHHHHHhCCCcceEEEcCCCchHHHhcccchHHHHHHHHHHhCCCCCCeEEEEeeeeeCCcccccccc
Confidence 499999998766544321 1 111 344421 1 111111 1112234445678899999865432 11
Q ss_pred ---HHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHH--HhcCCeeEEecCCCCHHHHHhhcCEEEecCCCCcchhHH
Q 016975 156 ---YKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAA--EKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTT 230 (379)
Q Consensus 156 ---~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~--~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~ 230 (379)
...-++.+.+.. .+++.+++-.. |. +.... ......+.-....++..++|..+|++|-= ++-++
T Consensus 559 ~~~~~~~~~~l~~~l--~~~~~li~r~H-p~---~~~~~~~~~~~~~~~~~~~~~di~~ll~~aD~lITD-----ySSv~ 627 (729)
T 3l7i_A 559 LFELKIDLDNLYKEL--GDDYVILLRMH-YL---ISNALDLSGYENFAIDVSNYNDVSELFLISDCLITD-----YSSVM 627 (729)
T ss_dssp CCCCTTCHHHHHHHH--TTTEEEEECCC-HH---HHTTCCCTTCTTTEEECTTCSCHHHHHHTCSEEEES-----SCTHH
T ss_pred ccchhhHHHHHHHHc--CCCeEEEEecC-cc---hhccccccccCCcEEeCCCCcCHHHHHHHhCEEEee-----chHHH
Confidence 111122222211 24676666432 11 11100 01111222234445555999999999942 56689
Q ss_pred HHHHHcCCeEEecCC----------CcccccccCCCEEEeCCHHHHHHHHHHHHh
Q 016975 231 AEALAMGKIVVCANH----------PSNDFFKQFPNCRTYDDRNGFVEATLKALA 275 (379)
Q Consensus 231 ~EAma~G~PVI~t~~----------g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~ 275 (379)
.|++..++|||.... |..-.+.+...|-++.|.++|.++|.....
T Consensus 628 fD~~~l~kPiif~~~D~~~Y~~~~rg~y~d~~~~~pg~~~~~~~eL~~~i~~~~~ 682 (729)
T 3l7i_A 628 FDYGILKRPQFFFAYDIDKYDKGLRGFYMNYMEDLPGPIYTEPYGLAKELKNLDK 682 (729)
T ss_dssp HHHGGGCCCEEEECTTTTTTTSSCCSBSSCTTSSSSSCEESSHHHHHHHHTTHHH
T ss_pred HhHHhhCCCEEEecCCHHHHhhccCCcccChhHhCCCCeECCHHHHHHHHhhhhc
Confidence 999999999998733 221122233456677799999999987654
No 66
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=83.87 E-value=21 Score=31.02 Aligned_cols=150 Identities=17% Similarity=-0.004 Sum_probs=70.3
Q ss_pred hcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCcccccccCCCEEEeCCHHHHHHHHHHHHhCCCCCCcHHHHhcCCHH
Q 016975 213 DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEEPALPTEAQRHQLSWE 292 (379)
Q Consensus 213 ~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~sw~ 292 (379)
..|-+|+.+....-.-.+-++.. |+|||..+....+ ....+..++.+....+...+++....++.--.- .....
T Consensus 71 ~vdgiI~~~~~~~~~~~~~~l~~-~iPvV~i~~~~~~----~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~-~~~~~ 144 (303)
T 3kke_A 71 RVDGVLLQRREDFDDDMLAAVLE-GVPAVTINSRVPG----RVGSVILDDQKGGGIATEHLITLGHSRIAFISG-TAIHD 144 (303)
T ss_dssp SSSEEEECCCTTCCHHHHHHHHT-TSCEEEESCCCTT----CCCEEEECHHHHHHHHHHHHHHTTCCSEEEEES-CSSCH
T ss_pred CCcEEEEecCCCCcHHHHHHHhC-CCCEEEECCcCCC----CCCEEEECcHHHHHHHHHHHHHCCCCeEEEEeC-CCcCc
Confidence 34665554332221102334445 9999998874432 223455667777777777777754332221100 01112
Q ss_pred HHHHHHHHHHhcccccccCCCCCCCccccccchhHHHhHHHHHHHHHHH-----hcCCcccceeecccCCCCCchHHHHH
Q 016975 293 SATERFLQVAELDQAVVKKPSKSPSKHFASTSLNLKKNMEEASAYVHFL-----ASGFETSRRAFGAIPGSLHPDEELCK 367 (379)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~~ 367 (379)
...+|+.. |..+.++..... . ......-....+.+...+..+ +...+....+|+.....-.-..+.++
T Consensus 145 ~~~~R~~G-f~~al~~~g~~~----~--~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~ai~~~nd~~A~g~~~al~ 217 (303)
T 3kke_A 145 TAQRRKEG-YLETLASAGLRS----E--AAWVVDAGWEADAGSAALNTLYRGANLGKPDGPTAVVVASVNAAVGALSTAL 217 (303)
T ss_dssp HHHHHHHH-HHHHHHHTTCCC----C--GGGEEECCSSHHHHHHHHHHHHHHHCTTSTTSCSEEEESSHHHHHHHHHHHH
T ss_pred cHHHHHHH-HHHHHHHcCCCC----C--cceEEecCCChHHHHHHHHHhcchhhhcCCCCCcEEEECCHHHHHHHHHHHH
Confidence 22233222 222211111000 0 000000011123455556666 66665566777654443344567889
Q ss_pred HhCCCCCC
Q 016975 368 ELGLVTPM 375 (379)
Q Consensus 368 ~~~~~~~~ 375 (379)
+.|+..|+
T Consensus 218 ~~G~~vP~ 225 (303)
T 3kke_A 218 RLGLRVPE 225 (303)
T ss_dssp HTTCCTTT
T ss_pred HcCCCCCC
Confidence 99998774
No 67
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=83.71 E-value=18 Score=31.23 Aligned_cols=145 Identities=12% Similarity=-0.043 Sum_probs=71.6
Q ss_pred cCEEE-ecCCCCcchhHHHHHHHcCCeEEecCCCcccccccCCCEEEeCCHHHHHHHHHHHHhCCCCCCcHH-HHhcCCH
Q 016975 214 YKVFL-NPSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEEPALPTEA-QRHQLSW 291 (379)
Q Consensus 214 ~dv~v-~ps~~E~~~~~~~EAma~G~PVI~t~~g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~~~~~~~~~~-~~~~~sw 291 (379)
.|.+| .|+..+. ..++.+..|+|||..+..... .....+..++.+....+...++.....++.-- .....+.
T Consensus 67 vdgiIi~~~~~~~---~~~~~~~~~iPvV~i~~~~~~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~ 140 (289)
T 3k9c_A 67 CEAAILLGTRFDT---DELGALADRVPALVVARASGL---PGVGAVRGDDVAGITLAVDHLTELGHRNIAHIDGADAPGG 140 (289)
T ss_dssp EEEEEEETCCCCH---HHHHHHHTTSCEEEESSCCSS---TTSEEEEECHHHHHHHHHHHHHHTTCCSEEEECCTTSTTH
T ss_pred CCEEEEECCCCCH---HHHHHHHcCCCEEEEcCCCCC---CCCCEEEeChHHHHHHHHHHHHHCCCCcEEEEeCCCCccH
Confidence 34444 4443332 456666669999998874321 11233555577777777777777543322110 0011222
Q ss_pred HHHHHHHHHHHhcccccccCCCCCCCccccccchhHHHhHHHHHHHHHHHhcCCcccceeecccCCCCCchHHHHHHhCC
Q 016975 292 ESATERFLQVAELDQAVVKKPSKSPSKHFASTSLNLKKNMEEASAYVHFLASGFETSRRAFGAIPGSLHPDEELCKELGL 371 (379)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 371 (379)
..-.+-|.+.++....... .....-....+.+...+..++...+....+|+.....-.-..+.+++.|+
T Consensus 141 ~~R~~Gf~~al~~~g~~~~-----------~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~ 209 (289)
T 3k9c_A 141 ADRRAGFLAAMDRHGLSAS-----------ATVVTGGTTETEGAEGMHTLLEMPTPPTAVVAFNDRCATGVLDLLVRSGR 209 (289)
T ss_dssp HHHHHHHHHHHHHTTCGGG-----------EEEECCCSSHHHHHHHHHHHHTSSSCCSEEEESSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCCCCC-----------ccEEECCCCHHHHHHHHHHHHcCCCCCCEEEECChHHHHHHHHHHHHcCC
Confidence 2223333333332110000 00000011123555666677776655667776544444456678899999
Q ss_pred CCCC
Q 016975 372 VTPM 375 (379)
Q Consensus 372 ~~~~ 375 (379)
..|+
T Consensus 210 ~vP~ 213 (289)
T 3k9c_A 210 DVPA 213 (289)
T ss_dssp CTTT
T ss_pred CCCC
Confidence 8773
No 68
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=83.45 E-value=12 Score=28.72 Aligned_cols=108 Identities=6% Similarity=-0.084 Sum_probs=67.0
Q ss_pred CcEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHhh--cCEEEecCC-CCcchhHHHHHHH-----cCCeEEe
Q 016975 172 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPST-TDVVCTTTAEALA-----MGKIVVC 242 (379)
Q Consensus 172 ~~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~--~dv~v~ps~-~E~~~~~~~EAma-----~G~PVI~ 242 (379)
..+++|+.+.+. ...+....++.+..+.........-+.+.. .|+++.-.. .+.-|+.+++.+. ..+|||.
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~ 86 (154)
T 3gt7_A 7 AGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVIL 86 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCEEE
Confidence 467888877665 555677777777665444322222144433 377776433 3455777777765 3567765
Q ss_pred cCC-Cc----ccccccCCCEEEeC--CHHHHHHHHHHHHhCCCC
Q 016975 243 ANH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA 279 (379)
Q Consensus 243 t~~-g~----~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~~ 279 (379)
... .. .+.+..+..+++.. +.+++..+|..++.....
T Consensus 87 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 130 (154)
T 3gt7_A 87 LTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVKR 130 (154)
T ss_dssp EECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTCC
T ss_pred EECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 443 33 23455666777776 999999999999876544
No 69
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=80.74 E-value=22 Score=30.56 Aligned_cols=195 Identities=10% Similarity=0.001 Sum_probs=87.6
Q ss_pred CHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCCCC----cchhHH
Q 016975 155 GYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTD----VVCTTT 230 (379)
Q Consensus 155 g~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~~E----~~~~~~ 230 (379)
-+..+++.+.+..++. ++.+.+.....+.+...+..+. -.-+..|.+|+..... ...-.+
T Consensus 29 ~~~~~~~gi~~~a~~~-g~~~~~~~~~~~~~~~~~~~~~---------------l~~~~vdgiIi~~~~~~~~~~~~~~~ 92 (298)
T 3tb6_A 29 IFPSIIRGIESYLSEQ-GYSMLLTSTNNNPDNERRGLEN---------------LLSQHIDGLIVEPTKSALQTPNIGYY 92 (298)
T ss_dssp THHHHHHHHHHHHHHT-TCEEEEEECTTCHHHHHHHHHH---------------HHHTCCSEEEECCSSTTSCCTTHHHH
T ss_pred HHHHHHHHHHHHHHHC-CCEEEEEeCCCChHHHHHHHHH---------------HHHCCCCEEEEecccccccCCcHHHH
Confidence 4555566655554432 5666666544443322222221 0113456665543322 122334
Q ss_pred HHHHHcCCeEEecCCCcccccccCCCEEEeCCHHHHHHHHHHHHhCCCCCCcHHHHhcCCHHHHHHHHHHHHhccccccc
Q 016975 231 AEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEEPALPTEAQRHQLSWESATERFLQVAELDQAVVK 310 (379)
Q Consensus 231 ~EAma~G~PVI~t~~g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~sw~~~~~~~~~~~~~~~~~~~ 310 (379)
-++...|+|||..+...... ....+..++.+....+...++.....++.--.. .-+ ....+|+.. |..+..+..
T Consensus 93 ~~~~~~~iPvV~~~~~~~~~---~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~-~~~-~~~~~R~~g-f~~~l~~~g 166 (298)
T 3tb6_A 93 LNLEKNGIPFAMINASYAEL---AAPSFTLDDVKGGMMAAEHLLSLGHTHMMGIFK-ADD-TQGVKRMNG-FIQAHRERE 166 (298)
T ss_dssp HHHHHTTCCEEEESSCCTTC---SSCEEEECHHHHHHHHHHHHHHTTCCSEEEEEE-SSS-HHHHHHHHH-HHHHHHHTT
T ss_pred HHHHhcCCCEEEEecCcCCC---CCCEEEeCcHHHHHHHHHHHHHCCCCcEEEEcC-CCC-ccHHHHHHH-HHHHHHHcC
Confidence 56677899999988743221 123455567777777777777654332221000 111 222233222 222211111
Q ss_pred CCCCCCCccccccchhHHHhHHHHHHHHHHHhcCCcc--cceeecccCCCCCchHHHHHHhCCCCCC
Q 016975 311 KPSKSPSKHFASTSLNLKKNMEEASAYVHFLASGFET--SRRAFGAIPGSLHPDEELCKELGLVTPM 375 (379)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 375 (379)
... ... .............+...+..++...+. ...+|+.......-..+.+++.|+..|+
T Consensus 167 ~~~---~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~ 229 (298)
T 3tb6_A 167 LFP---SPD-MIVTFTTEEKESKLLEKVKATLEKNSKHMPTAILCYNDEIALKVIDMLREMDLKVPE 229 (298)
T ss_dssp CCC---CGG-GEEEECHHHHTTHHHHHHHHHHHHTTTSCCSEEECSSHHHHHHHHHHHHHTTCCTTT
T ss_pred CCC---Ccc-eEEEecccchhhhHHHHHHHHHhcCCCCCCeEEEEeCcHHHHHHHHHHHHcCCCCCC
Confidence 000 000 000001111111224445555555554 4566665443444567888999997773
No 70
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=77.51 E-value=25 Score=30.18 Aligned_cols=62 Identities=10% Similarity=-0.060 Sum_probs=34.2
Q ss_pred hcCEEEecCCCCcchhHHHH-HHHcCCeEEecCCCcccccccCCCEEEeCCHHHHHHHHHHHHhCCCC
Q 016975 213 DYKVFLNPSTTDVVCTTTAE-ALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEEPA 279 (379)
Q Consensus 213 ~~dv~v~ps~~E~~~~~~~E-Ama~G~PVI~t~~g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~~~~~ 279 (379)
..|.+|+.+... ....++ +...|+|||+.+..... .....+..++.+....+...+++....
T Consensus 64 ~vdgiIi~~~~~--~~~~~~~~~~~~iPvV~~~~~~~~---~~~~~V~~D~~~~g~~a~~~L~~~G~~ 126 (291)
T 3egc_A 64 RVDGLILAPSEG--EHDYLRTELPKTFPIVAVNRELRI---PGCGAVLSENVRGARTAVEYLIARGHT 126 (291)
T ss_dssp TCSEEEECCCSS--CCHHHHHSSCTTSCEEEESSCCCC---TTCEEEEECHHHHHHHHHHHHHHTTCC
T ss_pred CCCEEEEeCCCC--ChHHHHHhhccCCCEEEEecccCC---CCCCEEEECcHHHHHHHHHHHHHcCCC
Confidence 456666544332 223444 44789999998874321 112234455666666666776665433
No 71
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=76.97 E-value=21 Score=26.78 Aligned_cols=107 Identities=6% Similarity=-0.098 Sum_probs=65.7
Q ss_pred CCcEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHh--hcCEEEecCC-CCcchhHHHHHHHc-----CCeEE
Q 016975 171 AGLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPST-TDVVCTTTAEALAM-----GKIVV 241 (379)
Q Consensus 171 ~~~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~--~~dv~v~ps~-~E~~~~~~~EAma~-----G~PVI 241 (379)
...+++|+.+.+. ...+.......+.++.......+.-..+. ..|++|.=.. .+.-|+.+++.+.. ++|||
T Consensus 7 ~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii 86 (147)
T 2zay_A 7 KWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKKNPQTASIPVI 86 (147)
T ss_dssp -CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSCEE
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHcCcccCCCCEE
Confidence 3567888887665 56677777776766554333222223333 2588776433 34557778887764 56766
Q ss_pred ecCC-Ccc----cccccCCCEEEeC--CHHHHHHHHHHHHhCC
Q 016975 242 CANH-PSN----DFFKQFPNCRTYD--DRNGFVEATLKALAEE 277 (379)
Q Consensus 242 ~t~~-g~~----e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~ 277 (379)
.... ... +.+..+..+++.. +.+++..+|..++...
T Consensus 87 ~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~ 129 (147)
T 2zay_A 87 ALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLL 129 (147)
T ss_dssp EEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 5433 332 2345666777776 9999999999887643
No 72
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=75.76 E-value=24 Score=30.28 Aligned_cols=149 Identities=7% Similarity=-0.076 Sum_probs=73.2
Q ss_pred hcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCcccccccCCCEEEeCCHHHHHHHHHHHHhCCCCCCcHHHHhcCCHH
Q 016975 213 DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEEPALPTEAQRHQLSWE 292 (379)
Q Consensus 213 ~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~sw~ 292 (379)
..|.+|+.+.... ...+.++...|+|||..+.... ....+..++.+....+...+++....++.--.. ..+..
T Consensus 68 ~vdgiIi~~~~~~-~~~~~~~~~~~iPvV~~~~~~~-----~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~-~~~~~ 140 (289)
T 3g85_A 68 SFDAAIIANISNY-DLEYLNKASLTLPIILFNRLSN-----KYSSVNVDNYKMGEKASLLFAKKRYKSAAAILT-ESLND 140 (289)
T ss_dssp CCSEEEESSCCHH-HHHHHHHCCCSSCEEEESCCCS-----SSEEEEECHHHHHHHHHHHHHHTTCCBCEEEEC-CCSSH
T ss_pred CCCEEEEecCCcc-cHHHHHhccCCCCEEEECCCCC-----CCCEEEeCHHHHHHHHHHHHHHcCCCEEEEEeC-Ccccc
Confidence 3466666544322 2456677788999999887422 123455556777777777777654332211000 01111
Q ss_pred HHHHHHHHHHhcccccccCCCCCCCccccccchhHHHhHHHHHHHHHHHhcCCcccceeecccCCCCCchHHHHHHhCCC
Q 016975 293 SATERFLQVAELDQAVVKKPSKSPSKHFASTSLNLKKNMEEASAYVHFLASGFETSRRAFGAIPGSLHPDEELCKELGLV 372 (379)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 372 (379)
...+|+ +.|..+..+...+. . ......-....+.+.+.+..++...+....+|+..........+.+++.|+.
T Consensus 141 ~~~~R~-~gf~~~l~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~ 213 (289)
T 3g85_A 141 AMDNRN-KGFIETCHKNGIKI----S--ENHIIAAENSIHGGVDAAKKLMKLKNTPKALFCNSDSIALGVISVLNKRQIS 213 (289)
T ss_dssp HHHHHH-HHHHHHHHHTTCBC----C--GGGEEECCSSHHHHHHHHHHHTTSSSCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred cHHHHH-HHHHHHHHHcCCCC----C--hhheeccCCCHHHHHHHHHHHHcCCCCCcEEEEcCCHHHHHHHHHHHHcCCC
Confidence 222232 22222111111000 0 0000000111235556666777766656677765444444567889999998
Q ss_pred CCC
Q 016975 373 TPM 375 (379)
Q Consensus 373 ~~~ 375 (379)
.|+
T Consensus 214 vP~ 216 (289)
T 3g85_A 214 IPD 216 (289)
T ss_dssp TTT
T ss_pred CCC
Confidence 773
No 73
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=75.57 E-value=7.4 Score=31.05 Aligned_cols=66 Identities=15% Similarity=0.089 Sum_probs=42.9
Q ss_pred HHHhhcCEEEecC--C--CCcchhHHHHHHHcCCeEEecCCC-----cc--c-------cccc-------------CCCE
Q 016975 209 LIFHDYKVFLNPS--T--TDVVCTTTAEALAMGKIVVCANHP-----SN--D-------FFKQ-------------FPNC 257 (379)
Q Consensus 209 ~~~~~~dv~v~ps--~--~E~~~~~~~EAma~G~PVI~t~~g-----~~--e-------~i~~-------------~~~g 257 (379)
..+..||++|.-- . ..|.+.=+==|.|.|+||++-... .. + ..++ ..+|
T Consensus 65 ~~i~~aD~viA~ldg~~~D~Gt~~EiG~A~a~gkPVi~~~~D~R~~g~~~~~~~~~~~~~~e~~f~~~N~~~~G~i~~~g 144 (162)
T 3ehd_A 65 ENVLASDLLVALLDGPTIDAGVASEIGVAYAKGIPVVALYTDSRQQGADNHQKLDALNEIAENQFHYLNLYTVGLIKLNG 144 (162)
T ss_dssp HHHHTCSEEEEECCSSSCCHHHHHHHHHHHHTTCCEEEECCCGGGCCTTCHHHHHHTTSTTCCCSCCCCHHHHHHHHTTE
T ss_pred HHHHHCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEEcCcccccCCcchhhhhhHHHhhhhhhhhhHHHhhhHHhCC
Confidence 7799999988632 1 233333344578999999987542 21 0 1111 1278
Q ss_pred EEeCCHHHHHHHHHHHH
Q 016975 258 RTYDDRNGFVEATLKAL 274 (379)
Q Consensus 258 ~~~~~~~~l~~~i~~~l 274 (379)
.++.+.+++.++|.+.+
T Consensus 145 ~~~~~~~~~~~~l~~~~ 161 (162)
T 3ehd_A 145 RVVSSEEDLLEEIKQRL 161 (162)
T ss_dssp EEESSHHHHHHHHHHTC
T ss_pred eEEeCHHHHHHHHHHHh
Confidence 99999999999988754
No 74
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=72.74 E-value=49 Score=29.07 Aligned_cols=151 Identities=10% Similarity=-0.059 Sum_probs=68.3
Q ss_pred hcCEEEecCCCCcchhHHHHH-HHcCCeEEecCCCcccccccCCCEEEeCCHHHHHHHHHHHHhCCCCCCcHHHHhcCCH
Q 016975 213 DYKVFLNPSTTDVVCTTTAEA-LAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEEPALPTEAQRHQLSW 291 (379)
Q Consensus 213 ~~dv~v~ps~~E~~~~~~~EA-ma~G~PVI~t~~g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~sw 291 (379)
..|-+|..+..... -.+.+. ...|+|||..+....+. ....+..++.+....+...+++....++.--.- ..+.
T Consensus 119 ~vdgiIi~~~~~~~-~~~~~~~~~~~iPvV~~~~~~~~~---~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~-~~~~ 193 (338)
T 3dbi_A 119 RCDAIMIYPRFLSV-DEIDDIIDAHSQPIMVLNRRLRKN---SSHSVWCDHKQTSFNAVAELINAGHQEIAFLTG-SMDS 193 (338)
T ss_dssp TCSEEEECCSSSCH-HHHHHHHHHCSSCEEEESSCCSSS---GGGEECBCHHHHHHHHHHHHHHTTCCSEEEECC-CTTC
T ss_pred CCCEEEEeCCCCCh-HHHHHHHHcCCCCEEEEcCCCCCC---CCCEEEEChHHHHHHHHHHHHHCCCCEEEEEeC-CCCC
Confidence 45666654332221 223343 45689999987643221 112344556777777777777654332211000 0011
Q ss_pred HHHHHHHHHHHhcccccccCCCCCCCccccccchhHHHhHHHHHHHHHHHhcCCcccceeecccCCCCCchHHHHHHhCC
Q 016975 292 ESATERFLQVAELDQAVVKKPSKSPSKHFASTSLNLKKNMEEASAYVHFLASGFETSRRAFGAIPGSLHPDEELCKELGL 371 (379)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 371 (379)
....+|+ +-|..+.++...+. . ......-....+.+...+..++...+....+|+.....-.-..+.+++.|+
T Consensus 194 ~~~~~R~-~Gf~~al~~~g~~~----~--~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~nd~~A~g~~~al~~~G~ 266 (338)
T 3dbi_A 194 PTSIERL-AGYKDALAQHGIAL----N--EKLIANGKWTPASGAEGVEMLLERGAKFSALVASNDDMAIGAMKALHERGV 266 (338)
T ss_dssp HHHHHHH-HHHHHHHHHTTCCC----C--GGGEECCCSSHHHHHHHHHHHHHTTCCCSEEEESSHHHHHHHHHHHHHTTC
T ss_pred ccHHHHH-HHHHHHHHHCCCCC----C--cceEEeCCCCHHHHHHHHHHHHcCCCCCeEEEECChHHHHHHHHHHHHcCC
Confidence 1222222 22222111111000 0 000000011123455566666665555567776543333346678899999
Q ss_pred CCCC
Q 016975 372 VTPM 375 (379)
Q Consensus 372 ~~~~ 375 (379)
..|+
T Consensus 267 ~vP~ 270 (338)
T 3dbi_A 267 AVPE 270 (338)
T ss_dssp CTTT
T ss_pred CCCC
Confidence 8773
No 75
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=72.03 E-value=5 Score=29.48 Aligned_cols=67 Identities=15% Similarity=0.029 Sum_probs=43.5
Q ss_pred EEEEcCCcC----hHHHHHHHHhcCCeeEEe-cCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHH--cCCeEEe
Q 016975 175 VDLYGNGED----FNQIQEAAEKLKIVVRVY-PGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALA--MGKIVVC 242 (379)
Q Consensus 175 l~i~G~g~~----~~~l~~~~~~~~l~v~~~-g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma--~G~PVI~ 242 (379)
++++|.|-. .+.+++.+++.|+++.+. ..+...++....+|+++..... .+-..-++..+ .++|||-
T Consensus 7 ll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i~a~~~~~~~~~~~~~Dvil~~pqv-~~~~~~~~~~~~~~~v~vI~ 80 (106)
T 1e2b_A 7 YLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAGEKGQNADVVLLGPQI-AYMLPEIQRLLPNKPVEVID 80 (106)
T ss_dssp EEECSSSTTTHHHHHHHHHHHHHSCCSEEEEEECSSSTTHHHHHCSEEEECTTS-GGGHHHHHHHSSSSCCCBCC
T ss_pred EEECCCchhHHHHHHHHHHHHHHCCCCeEEEEecHHHHHhhccCCCEEEEccch-hhhHHHHHHHhcCCCceEEC
Confidence 778888776 346778888889877765 5566565678899999876543 23333444443 3444443
No 76
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=71.67 E-value=47 Score=28.32 Aligned_cols=151 Identities=8% Similarity=-0.121 Sum_probs=69.5
Q ss_pred hcCEEEecC-CCCcchhHHHHHHHcCCeEEecCCCcccccccCCCEEEeCCHHHHHHHHHHHHhCCCCCCcHHHHhcCCH
Q 016975 213 DYKVFLNPS-TTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEEPALPTEAQRHQLSW 291 (379)
Q Consensus 213 ~~dv~v~ps-~~E~~~~~~~EAma~G~PVI~t~~g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~sw 291 (379)
..|.+|+.+ ..+. -.+-++...|+|||..+...... +....+..++.+....+...++.....++.--.. ..+.
T Consensus 69 ~vdgiIi~~~~~~~--~~~~~l~~~~iPvV~~~~~~~~~--~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~-~~~~ 143 (292)
T 3k4h_A 69 QIGGIILLYSREND--RIIQYLHEQNFPFVLIGKPYDRK--DEITYVDNDNYTAAREVAEYLISLGHKQIAFIGG-GSDL 143 (292)
T ss_dssp CCCEEEESCCBTTC--HHHHHHHHTTCCEEEESCCSSCT--TTSCEEECCHHHHHHHHHHHHHHTTCCCEEEEES-CTTB
T ss_pred CCCEEEEeCCCCCh--HHHHHHHHCCCCEEEECCCCCCC--CCCCEEEECcHHHHHHHHHHHHHCCCceEEEEeC-cccc
Confidence 446665533 2222 22344557899999987743211 1123344456666666677776654332211000 0011
Q ss_pred HHHHHHHHHHHhcccccccCCCCCCCccccccchhHHHhHHHHHHHHHHHhcCCcccceeecccCCCCCchHHHHHHhCC
Q 016975 292 ESATERFLQVAELDQAVVKKPSKSPSKHFASTSLNLKKNMEEASAYVHFLASGFETSRRAFGAIPGSLHPDEELCKELGL 371 (379)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 371 (379)
....+|+ +.|..+.++..... . ......-....+.+...+..++...+....+|+.......-..+.+++.|+
T Consensus 144 ~~~~~R~-~gf~~~l~~~g~~~----~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~ 216 (292)
T 3k4h_A 144 LVTRDRL-AGMSDALKLADIVL----P--KEYILHFDFSRESGQQAVEELMGLQQPPTAIMATDDLIGLGVLSALSKKGF 216 (292)
T ss_dssp HHHHHHH-HHHHHHHHHTTCCC----C--GGGEEECCSSHHHHHHHHHHHHTSSSCCSEEEESSHHHHHHHHHHHHHTTC
T ss_pred hhHHHHH-HHHHHHHHHcCCCC----C--hheEEecCCCHHHHHHHHHHHHcCCCCCcEEEEcChHHHHHHHHHHHHhCC
Confidence 1122232 22222111111000 0 000000011123555666677776665667776544334456788899999
Q ss_pred CCCC
Q 016975 372 VTPM 375 (379)
Q Consensus 372 ~~~~ 375 (379)
..|+
T Consensus 217 ~vP~ 220 (292)
T 3k4h_A 217 VVPK 220 (292)
T ss_dssp CTTT
T ss_pred CCCC
Confidence 8773
No 77
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=71.41 E-value=28 Score=25.83 Aligned_cols=105 Identities=10% Similarity=-0.012 Sum_probs=62.0
Q ss_pred CCcEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHhh--cCEEEecCC-CCcchhHHHHHHHc-----CCeEE
Q 016975 171 AGLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPST-TDVVCTTTAEALAM-----GKIVV 241 (379)
Q Consensus 171 ~~~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~--~dv~v~ps~-~E~~~~~~~EAma~-----G~PVI 241 (379)
...+++|+.+.+. ...+....+..+.++.......+.-..+.. .|+++.-.. .+.-|..+++.+.. .+|||
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii 85 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIV 85 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEE
Confidence 3567888876655 455666677767665433332222244443 366665433 34456777777754 46776
Q ss_pred ecCC-Cc----ccccccCCCEEEeC--CHHHHHHHHHHHHh
Q 016975 242 CANH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALA 275 (379)
Q Consensus 242 ~t~~-g~----~e~i~~~~~g~~~~--~~~~l~~~i~~~l~ 275 (379)
.-.. .. .+.+..+..+++.. +.+++.++|..++.
T Consensus 86 ~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 126 (142)
T 3cg4_A 86 MLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMG 126 (142)
T ss_dssp EEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHH
Confidence 5433 32 22344445566666 99999999988775
No 78
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=71.01 E-value=50 Score=28.35 Aligned_cols=151 Identities=8% Similarity=-0.138 Sum_probs=72.7
Q ss_pred hcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCcccccccCCCEEEeCCHHHHHHHHHHHHhCCCCCCcHHHHhcCCHH
Q 016975 213 DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEEPALPTEAQRHQLSWE 292 (379)
Q Consensus 213 ~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~sw~ 292 (379)
..|-+|+.+....- -.+-++...|+|||..+..... .....+..++.+....+...++.....++.--.. ..+..
T Consensus 65 ~vdGiIi~~~~~~~-~~~~~l~~~~iPvV~~~~~~~~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~-~~~~~ 139 (294)
T 3qk7_A 65 RVDALIVAHTQPED-FRLQYLQKQNFPFLALGRSHLP---KPYAWFDFDNHAGASLAVKRLLELGHQRIAFVST-DARIS 139 (294)
T ss_dssp CCSEEEECSCCSSC-HHHHHHHHTTCCEEEESCCCCS---SCCEEEEECHHHHHHHHHHHHHHTTCCCEEEEEE-SSCCH
T ss_pred CCCEEEEeCCCCCh-HHHHHHHhCCCCEEEECCCCCC---CCCCEEEcChHHHHHHHHHHHHHCCCceEEEEeC-Ccccc
Confidence 45666554332211 2344566789999998874211 1122355557777777777777754433221100 11112
Q ss_pred HHHHHHHHHHhcccccccCCCCCCCccccccchhHHHhHHHHHHHHHHHhcCCcccceeecccCCCCCchHHHHHHhCCC
Q 016975 293 SATERFLQVAELDQAVVKKPSKSPSKHFASTSLNLKKNMEEASAYVHFLASGFETSRRAFGAIPGSLHPDEELCKELGLV 372 (379)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 372 (379)
...+| .+-|..+.++...... ......-....+.+...+..++...+....+|+.....-.-..+.+++.|+.
T Consensus 140 ~~~~R-~~Gf~~al~~~g~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~nd~~A~g~~~al~~~G~~ 212 (294)
T 3qk7_A 140 YVDQR-LQGYVQTMSEAGLMPL------AGYLQKADPTRPGGYLAASRLLALEVPPTAIITDCNMLGDGVASALDKAGLL 212 (294)
T ss_dssp HHHHH-HHHHHHHHHTTTCCCC------TTCEEEECSSHHHHHHHHHHHHHSSSCCSEEEESSHHHHHHHHHHHHHTTCS
T ss_pred hHHHH-HHHHHHHHHHCCCCCC------hhHeecCCCCHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHHHHHHHHcCCC
Confidence 23333 2223322211111000 0000000111235556666667665555667765433334567888999998
Q ss_pred CCC
Q 016975 373 TPM 375 (379)
Q Consensus 373 ~~~ 375 (379)
.|+
T Consensus 213 vP~ 215 (294)
T 3qk7_A 213 GGE 215 (294)
T ss_dssp STT
T ss_pred CCC
Confidence 773
No 79
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=70.52 E-value=7.3 Score=32.43 Aligned_cols=92 Identities=15% Similarity=0.056 Sum_probs=56.8
Q ss_pred cccCHHHHHHHHHHhHhhcCCcEEEEEcCCcC-hHHHHHHHHhcCC---eeEEecCC-CCHH-HHHhhcCEEEecCCCCc
Q 016975 152 WSKGYKELLELLDDHQKELAGLEVDLYGNGED-FNQIQEAAEKLKI---VVRVYPGR-DHAD-LIFHDYKVFLNPSTTDV 225 (379)
Q Consensus 152 ~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~l---~v~~~g~~-~~~~-~~~~~~dv~v~ps~~E~ 225 (379)
-.|=+..|.+|+.-+..- .+-+++++|..+. .+.+++.++..|. +-+|+|+. .+.. .-+..=|+++.....+
T Consensus 49 L~kT~~~L~~A~~~i~~i-~~~~iLfVgTk~~~~~~V~~~A~~~g~~~v~~rwlgG~LTN~~~~~f~~PdlliV~Dp~~- 126 (208)
T 1vi6_A 49 IRKLDERIRVAAKFLSRY-EPSKILLVAARQYAHKPVQMFSKVVGSDYIVGRFIPGTLTNPMLSEYREPEVVFVNDPAI- 126 (208)
T ss_dssp HHHHHHHHHHHHHHHTTS-CGGGEEEEECSGGGHHHHHHHHHHHCCEEEESSCCTTTTTCTTSTTCCCCSEEEESCTTT-
T ss_pred HHHHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhCCeeecCEECCCcccChhhHhhCCCCEEEEECCCc-
Confidence 345556666666665544 3456888998776 3456666766664 33566553 3333 2233447776664332
Q ss_pred chhHHHHHHHcCCeEEecCC
Q 016975 226 VCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 226 ~~~~~~EAma~G~PVI~t~~ 245 (379)
=-.++.||...|+|||+--.
T Consensus 127 e~~ai~EA~~l~IPvIalvD 146 (208)
T 1vi6_A 127 DKQAVSEATAVGIPVVALCD 146 (208)
T ss_dssp THHHHHHHHHTTCCEEEEEC
T ss_pred chhHHHHHHHhCCCEEEEeC
Confidence 23579999999999998643
No 80
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=69.64 E-value=32 Score=25.56 Aligned_cols=104 Identities=10% Similarity=-0.037 Sum_probs=63.8
Q ss_pred cEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHh----hcCEEEecCC-CCcchhHHHHHHH---cCCeEEec
Q 016975 173 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH----DYKVFLNPST-TDVVCTTTAEALA---MGKIVVCA 243 (379)
Q Consensus 173 ~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~----~~dv~v~ps~-~E~~~~~~~EAma---~G~PVI~t 243 (379)
.+++|+.+.+. ...+.....+.+..+............+. ..|+++.-.. .+.-|+.+++.+. ..+|||..
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~l 83 (143)
T 3jte_A 4 AKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHMAVIIL 83 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEE
Confidence 56778876655 55577777777765544333222224444 4587776433 3555666666554 36777654
Q ss_pred CC-Cc----ccccccCCCEEEeC--CHHHHHHHHHHHHhC
Q 016975 244 NH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 276 (379)
Q Consensus 244 ~~-g~----~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~ 276 (379)
.. .. .+.+..+..+++.. +.+++..+|..++..
T Consensus 84 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 123 (143)
T 3jte_A 84 TGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINR 123 (143)
T ss_dssp ECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHH
Confidence 43 33 23456666777776 999999999988764
No 81
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=69.17 E-value=32 Score=25.42 Aligned_cols=106 Identities=11% Similarity=-0.004 Sum_probs=65.6
Q ss_pred CcEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHhh--cCEEEecCC-CCcchhHHHHHHHc-----CCeEEe
Q 016975 172 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPST-TDVVCTTTAEALAM-----GKIVVC 242 (379)
Q Consensus 172 ~~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~--~dv~v~ps~-~E~~~~~~~EAma~-----G~PVI~ 242 (379)
..+++|+.+.+. ...+....++.+..+.........-+.+.. .|+++.-.. .+.-|+.+++.+.. .+|||.
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~ 85 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVV 85 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEE
Confidence 457778776555 455667777777665444322222233433 377776433 35567777777654 678876
Q ss_pred cCC-Ccc-----cccccCCCEEEeC--CHHHHHHHHHHHHhCC
Q 016975 243 ANH-PSN-----DFFKQFPNCRTYD--DRNGFVEATLKALAEE 277 (379)
Q Consensus 243 t~~-g~~-----e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~ 277 (379)
-.. ... +.+..+..+++.. +.++|..+|..++...
T Consensus 86 ~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~ 128 (140)
T 3grc_A 86 VSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNM 128 (140)
T ss_dssp ECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred EecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhc
Confidence 554 222 3344556667766 9999999999988753
No 82
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=68.11 E-value=56 Score=27.85 Aligned_cols=152 Identities=5% Similarity=-0.126 Sum_probs=69.5
Q ss_pred hhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCcccccccCCCEEEeCCHHHHHHHHHHHHhCCCCCCcHHHHhcCCH
Q 016975 212 HDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEEPALPTEAQRHQLSW 291 (379)
Q Consensus 212 ~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~sw 291 (379)
+..|.+|+.+.... .-.+-++...|+|||..+...... ....+..++.+....+...+++....++.--. ...+.
T Consensus 65 ~~vdgiIi~~~~~~-~~~~~~l~~~~iPvV~i~~~~~~~---~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~-~~~~~ 139 (288)
T 3gv0_A 65 GSADGVIISKIEPN-DPRVRFMTERNMPFVTHGRSDMGI---EHAFHDFDNEAYAYEAVERLAQCGRKRIAVIV-PPSRF 139 (288)
T ss_dssp TCCSEEEEESCCTT-CHHHHHHHHTTCCEEEESCCCSSC---CCEEEEECHHHHHHHHHHHHHHTTCCEEEEEC-CCTTS
T ss_pred CCccEEEEecCCCC-cHHHHHHhhCCCCEEEECCcCCCC---CCcEEEeCcHHHHHHHHHHHHHCCCCeEEEEc-CCccc
Confidence 34565554332211 122444557899999987643211 12234455667777777777765433211100 00111
Q ss_pred HHHHHHHHHHHhcccccccCCCCCCCccccccchhHHHhHHHHHHHHHHHhcCCcccceeecccCCCCCchHHHHHHhCC
Q 016975 292 ESATERFLQVAELDQAVVKKPSKSPSKHFASTSLNLKKNMEEASAYVHFLASGFETSRRAFGAIPGSLHPDEELCKELGL 371 (379)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 371 (379)
....+|+. .|..+.++...... ...........+.+...+..++...+....+|+.......-..+.+++.|+
T Consensus 140 ~~~~~R~~-gf~~~l~~~g~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~ 212 (288)
T 3gv0_A 140 SFHDHARK-GFNRGIRDFGLTEF------PIDAVTIETPLEKIRDFGQRLMQSSDRPDGIVSISGSSTIALVAGFEAAGV 212 (288)
T ss_dssp HHHHHHHH-HHHHHHHHTTCEEC------CCCSCCTTSCHHHHHHHHHHHTTSSSCCSEEEESCHHHHHHHHHHHHTTTC
T ss_pred chHHHHHH-HHHHHHHHcCCCcc------hhheeccccchHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHcCC
Confidence 22223322 22222111110000 000001111223455566667766655566666544333446678889999
Q ss_pred CCCC
Q 016975 372 VTPM 375 (379)
Q Consensus 372 ~~~~ 375 (379)
..|+
T Consensus 213 ~vP~ 216 (288)
T 3gv0_A 213 KIGE 216 (288)
T ss_dssp CTTT
T ss_pred CCCC
Confidence 7763
No 83
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=67.42 E-value=37 Score=25.84 Aligned_cols=103 Identities=9% Similarity=0.074 Sum_probs=54.1
Q ss_pred cEEEEEcCCcC-hHHHHHHHHhcCCeeE-EecCCCCHHHHHh----hcCEEEecCC-CCcchhHHHHHHH---cCCeEEe
Q 016975 173 LEVDLYGNGED-FNQIQEAAEKLKIVVR-VYPGRDHADLIFH----DYKVFLNPST-TDVVCTTTAEALA---MGKIVVC 242 (379)
Q Consensus 173 ~~l~i~G~g~~-~~~l~~~~~~~~l~v~-~~g~~~~~~~~~~----~~dv~v~ps~-~E~~~~~~~EAma---~G~PVI~ 242 (379)
.+++|+.+.+. ...+....++.+.++. ........-+.+. ..|+++.-.. .+.-|+.+++.+. ..+|||.
T Consensus 37 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~ii~ 116 (157)
T 3hzh_A 37 FNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFDKNARVIM 116 (157)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTCCEEE
T ss_pred eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhCCCCcEEE
Confidence 45555555443 3444555555554432 1111111112222 3477665433 2445666666553 3566665
Q ss_pred cCC-Cc----ccccccCCCEEEeC--CHHHHHHHHHHHHh
Q 016975 243 ANH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALA 275 (379)
Q Consensus 243 t~~-g~----~e~i~~~~~g~~~~--~~~~l~~~i~~~l~ 275 (379)
... .. .+.+..+..+++.. +.+++.++|..++.
T Consensus 117 ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 117 ISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTTC
T ss_pred EeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 443 33 23455666777776 99999999988764
No 84
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=66.90 E-value=36 Score=28.86 Aligned_cols=147 Identities=14% Similarity=-0.025 Sum_probs=67.0
Q ss_pred hcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCcccccccCCCEEEeCCHHHHHHHHHHHHhCCCCCCcHHHHhcCCHH
Q 016975 213 DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEEPALPTEAQRHQLSWE 292 (379)
Q Consensus 213 ~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~sw~ 292 (379)
..|.+|+.+... .-.+-++...|+|||..+...... ....+..++.+....+...+++....++.--....-.+.
T Consensus 63 ~vdgiIi~~~~~--~~~~~~l~~~~iPvV~i~~~~~~~---~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~ 137 (276)
T 3jy6_A 63 GFDGLILQSFSN--PQTVQEILHQQMPVVSVDREMDAC---PWPQVVTDNFEAAKAATTAFRQQGYQHVVVLTSELELSR 137 (276)
T ss_dssp TCSEEEEESSCC--HHHHHHHHTTSSCEEEESCCCTTC---SSCEEECCHHHHHHHHHHHHHTTTCCEEEEEEECSTTCH
T ss_pred CCCEEEEecCCc--HHHHHHHHHCCCCEEEEecccCCC---CCCEEEEChHHHHHHHHHHHHHcCCCeEEEEecCCCCCc
Confidence 446555443333 223344456899999987643211 122344456666666667766653332211100111123
Q ss_pred HHHHHHHHHHhcccccccCCCCCCCccccccchhHHHhHHHHHHHHHHHhcCCcccceeecccCCCCCchHHHHHHhCCC
Q 016975 293 SATERFLQVAELDQAVVKKPSKSPSKHFASTSLNLKKNMEEASAYVHFLASGFETSRRAFGAIPGSLHPDEELCKELGLV 372 (379)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 372 (379)
...+|+.. |..+.++.+. -......... .++...+...+...+....+|+.......-..+.+++.|+.
T Consensus 138 ~~~~R~~g-f~~~l~~~~~------~~~~~~~~~~----~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~ 206 (276)
T 3jy6_A 138 TRQERYRG-ILAAAQDVDV------LEVSESSYNH----SEVHQRLTQLITQNDQKTVAFALKERWLLEFFPNLIISGLI 206 (276)
T ss_dssp HHHHHHHH-HHTTCSEEEE------EEECSSSCCH----HHHHHHHHHHHHSSSSCEEEEESSHHHHHHHSHHHHHSSSC
T ss_pred hHHHHHHH-HHHHHHhCCc------EEEeccccCC----cHHHHHHHHHHhcCCCCcEEEEeCcHHHHHHHHHHHHcCCC
Confidence 33344333 3333222210 0000000001 12333344445555555667765443334456788999998
Q ss_pred CCC
Q 016975 373 TPM 375 (379)
Q Consensus 373 ~~~ 375 (379)
.|+
T Consensus 207 vP~ 209 (276)
T 3jy6_A 207 DNQ 209 (276)
T ss_dssp CSS
T ss_pred CCC
Confidence 774
No 85
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=66.66 E-value=36 Score=25.09 Aligned_cols=107 Identities=6% Similarity=0.031 Sum_probs=65.6
Q ss_pred CcEEEEEcCCcC-hHHHHHHHHh-cCCe-eEEecCCCCHHHHHhh--cCEEEecCC-CCcchhHHHHHHHc-----CCeE
Q 016975 172 GLEVDLYGNGED-FNQIQEAAEK-LKIV-VRVYPGRDHADLIFHD--YKVFLNPST-TDVVCTTTAEALAM-----GKIV 240 (379)
Q Consensus 172 ~~~l~i~G~g~~-~~~l~~~~~~-~~l~-v~~~g~~~~~~~~~~~--~dv~v~ps~-~E~~~~~~~EAma~-----G~PV 240 (379)
..+++|+.+.+. ...+....++ .+.. +.......+.-..+.. .|+++.-.. .+.-|..+++.+.. .+||
T Consensus 8 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~i 87 (143)
T 3cnb_A 8 DFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIV 87 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEE
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhcCCCEEEEecccCCCcHHHHHHHHHhCccccCCcE
Confidence 467888877665 4556666666 6666 5444433222244433 477775433 34456777777654 5677
Q ss_pred EecCC-Cc----ccccccCCCEEEeC--CHHHHHHHHHHHHhCCC
Q 016975 241 VCANH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAEEP 278 (379)
Q Consensus 241 I~t~~-g~----~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~ 278 (379)
|.... .. .+.+..+..+++.. +.+++.++|..++....
T Consensus 88 i~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 132 (143)
T 3cnb_A 88 IAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQKK 132 (143)
T ss_dssp EEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTTC
T ss_pred EEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Confidence 75433 33 23455666777766 99999999999887543
No 86
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=66.27 E-value=57 Score=28.67 Aligned_cols=134 Identities=9% Similarity=-0.057 Sum_probs=60.8
Q ss_pred HHHHHHcCCeEEecCCCcccccccCCCEEEeCCHHHHHHHHHHHHhCCCCCCcHHHHhcCCHHHHHHHHHHHHhcccccc
Q 016975 230 TAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEEPALPTEAQRHQLSWESATERFLQVAELDQAVV 309 (379)
Q Consensus 230 ~~EAma~G~PVI~t~~g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~sw~~~~~~~~~~~~~~~~~~ 309 (379)
+-++...|+|||..+....+ ....+..++.+....+...++...-.++.--.... +. ...+|+.. |..+..+.
T Consensus 134 ~~~l~~~~iPvV~~~~~~~~----~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~-~~-~~~~R~~G-f~~al~~~ 206 (339)
T 3h5o_A 134 ERILSQHALPVVYMMDLADD----GRCCVGFSQEDAGAAITRHLLSRGKRRIGFLGAQL-DE-RVMKRLDG-YRAALDAA 206 (339)
T ss_dssp HHHHHHTTCCEEEEESCCSS----SCCEEECCHHHHHHHHHHHHHHTTCCSEEEEEESC-CH-HHHHHHHH-HHHHHHHT
T ss_pred HHHHhcCCCCEEEEeecCCC----CCeEEEECHHHHHHHHHHHHHHCCCCeEEEEeCCC-Cc-cHHHHHHH-HHHHHHHC
Confidence 34456789999987542211 11234455777777777777775443322111011 11 12233222 22221111
Q ss_pred cCCCCCCCccccccchhHHHhHHHHHHHHHHHhcCCcccceeecccCCCCCchHHHHHHhCCCCCC
Q 016975 310 KKPSKSPSKHFASTSLNLKKNMEEASAYVHFLASGFETSRRAFGAIPGSLHPDEELCKELGLVTPM 375 (379)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 375 (379)
... ... ......-....+.+...+..++...+....+|+.....-.-..+.+++.|+..|+
T Consensus 207 g~~----~~~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~nD~~A~g~~~al~~~G~~vP~ 267 (339)
T 3h5o_A 207 DCR----DAG-LEWLDPQPSSMQMGADMLDRALAERPDCDALFCCNDDLAIGALARSQQLGIAVPE 267 (339)
T ss_dssp TCC----CGG-GEEEECSCCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHHTTCCTTT
T ss_pred CCC----CCC-hheEecCCCCHHHHHHHHHHHHcCCCCCcEEEECChHHHHHHHHHHHHcCCCCCC
Confidence 100 000 0000000111234444555555555445666665433334456788999998774
No 87
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=66.25 E-value=30 Score=25.47 Aligned_cols=106 Identities=11% Similarity=-0.019 Sum_probs=60.8
Q ss_pred CcEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHhh--cCEEEecCC-C-----CcchhHHHHHHH---cCCe
Q 016975 172 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPST-T-----DVVCTTTAEALA---MGKI 239 (379)
Q Consensus 172 ~~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~--~dv~v~ps~-~-----E~~~~~~~EAma---~G~P 239 (379)
..+++|+.+.+. ...+....++.+..+.......+.-..+.. .|+++.-.. . +.-|+.+++.+. ..+|
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 82 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLP 82 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCC
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCCC
Confidence 356777776554 455666666666655543332222244443 366665332 2 334566666553 4677
Q ss_pred EEecCC-Cc----ccccccCCCEEEeC--CHHHHHHHHHHHHhCC
Q 016975 240 VVCANH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAEE 277 (379)
Q Consensus 240 VI~t~~-g~----~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~ 277 (379)
||.... .. .+.+..+..+++.. +.+++.++|..++...
T Consensus 83 ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~ 127 (140)
T 2qr3_A 83 VVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQA 127 (140)
T ss_dssp EEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC
T ss_pred EEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhc
Confidence 765433 32 23445566676655 9999999999988754
No 88
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=64.30 E-value=40 Score=25.11 Aligned_cols=104 Identities=11% Similarity=0.048 Sum_probs=59.4
Q ss_pred CcEEEEEcCCcC-hHHHHHHHHhcC-CeeEEecCCCCHH---HHH---hhcCEEEecCC-CCcchhHHHHHHHc---CCe
Q 016975 172 GLEVDLYGNGED-FNQIQEAAEKLK-IVVRVYPGRDHAD---LIF---HDYKVFLNPST-TDVVCTTTAEALAM---GKI 239 (379)
Q Consensus 172 ~~~l~i~G~g~~-~~~l~~~~~~~~-l~v~~~g~~~~~~---~~~---~~~dv~v~ps~-~E~~~~~~~EAma~---G~P 239 (379)
..+++|+.+.+. ...+.....+.+ ..+.... +..+ .+. ...|++|.=.. .+.-|+.+++.+.. ..|
T Consensus 20 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~--~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ 97 (146)
T 4dad_A 20 MINILVASEDASRLAHLARLVGDAGRYRVTRTV--GRAAQIVQRTDGLDAFDILMIDGAALDTAELAAIEKLSRLHPGLT 97 (146)
T ss_dssp GCEEEEECSCHHHHHHHHHHHHHHCSCEEEEEC--CCHHHHTTCHHHHTTCSEEEEECTTCCHHHHHHHHHHHHHCTTCE
T ss_pred CCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeC--CHHHHHHHHHhcCCCCCEEEEeCCCCCccHHHHHHHHHHhCCCCc
Confidence 456677665554 444555566555 4443322 2222 222 34577765433 24456666665543 567
Q ss_pred EEecCC-Ccc----cccccCCCEEEeC--CHHHHHHHHHHHHhCC
Q 016975 240 VVCANH-PSN----DFFKQFPNCRTYD--DRNGFVEATLKALAEE 277 (379)
Q Consensus 240 VI~t~~-g~~----e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~ 277 (379)
||.-.. ... +.+..+..+++.. +.++|..+|..++...
T Consensus 98 ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 142 (146)
T 4dad_A 98 CLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQC 142 (146)
T ss_dssp EEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTC
T ss_pred EEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhh
Confidence 765433 332 2445556667766 9999999999988754
No 89
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=63.56 E-value=39 Score=24.38 Aligned_cols=102 Identities=11% Similarity=-0.067 Sum_probs=59.6
Q ss_pred EEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHhh--cCEEEecCC-CCcchhHHHHHHH-----cCCeEEecC
Q 016975 174 EVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPST-TDVVCTTTAEALA-----MGKIVVCAN 244 (379)
Q Consensus 174 ~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~--~dv~v~ps~-~E~~~~~~~EAma-----~G~PVI~t~ 244 (379)
+++++.+.+. ...+....++.|.++.........-+.+.. .|+++.=.. -+.-|+.+++.+. ...|||...
T Consensus 4 ~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~s 83 (122)
T 3gl9_A 4 KVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLT 83 (122)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEEEe
Confidence 5667776554 445566666666655433221111144433 377765432 2455777887774 356766543
Q ss_pred -CCcc----cccccCCCEEEeC--CHHHHHHHHHHHHh
Q 016975 245 -HPSN----DFFKQFPNCRTYD--DRNGFVEATLKALA 275 (379)
Q Consensus 245 -~g~~----e~i~~~~~g~~~~--~~~~l~~~i~~~l~ 275 (379)
.+.. +.+..+..+++.. +++++.+++.+++.
T Consensus 84 ~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 84 AKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp SCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred cCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 3432 2445666777776 99999999998764
No 90
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=63.41 E-value=41 Score=24.64 Aligned_cols=105 Identities=7% Similarity=-0.024 Sum_probs=63.4
Q ss_pred CcEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHh--hcCEEEecCC-CCcchhHHHHHHH---cCCeEEecC
Q 016975 172 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPST-TDVVCTTTAEALA---MGKIVVCAN 244 (379)
Q Consensus 172 ~~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~--~~dv~v~ps~-~E~~~~~~~EAma---~G~PVI~t~ 244 (379)
..+++|+.+.+. ...+....++.+..+.........-+.+. ..|+++.-.. .+.-|+.+++.+. ...|||...
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s 86 (137)
T 3hdg_A 7 ALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHAPDVIITDIRMPKLGGLEMLDRIKAGGAKPYVIVIS 86 (137)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEEECC
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEe
Confidence 466788876655 45566666665545544433222223333 3477776533 3455666776654 367777655
Q ss_pred C-Cc----ccccccCCCEEEeC--CHHHHHHHHHHHHhC
Q 016975 245 H-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 276 (379)
Q Consensus 245 ~-g~----~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~ 276 (379)
. .. .+.+..+..+++.. +.+++.++|.+++..
T Consensus 87 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 125 (137)
T 3hdg_A 87 AFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHI 125 (137)
T ss_dssp CCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHH
T ss_pred cCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHH
Confidence 4 33 23455666777776 999999999998764
No 91
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=63.17 E-value=43 Score=24.77 Aligned_cols=105 Identities=11% Similarity=-0.019 Sum_probs=62.9
Q ss_pred CcEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHhh---cCEEEecCCC-C-cchhHHHHHHH--cCCeEEec
Q 016975 172 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD---YKVFLNPSTT-D-VVCTTTAEALA--MGKIVVCA 243 (379)
Q Consensus 172 ~~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~---~dv~v~ps~~-E-~~~~~~~EAma--~G~PVI~t 243 (379)
+.+++|+.+.+. ...+....++.+..+.........-..+.. .|+++.=... + .-|..+++.+. ..+|||.-
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii~l 84 (140)
T 3h5i_A 5 DKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQISELPVVFL 84 (140)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEEEE
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEEEE
Confidence 457788877655 555677777777665543322222244433 4777764433 3 45666666654 36777654
Q ss_pred CC-Cc----ccccccCCCEEEeC--CHHHHHHHHHHHHhC
Q 016975 244 NH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 276 (379)
Q Consensus 244 ~~-g~----~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~ 276 (379)
.. .. .+.+..+..+++.. +++++.++|..++..
T Consensus 85 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 124 (140)
T 3h5i_A 85 TAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRL 124 (140)
T ss_dssp ESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 33 32 23445556667766 999999999988763
No 92
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=62.41 E-value=15 Score=32.01 Aligned_cols=43 Identities=9% Similarity=0.056 Sum_probs=32.6
Q ss_pred CCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc
Q 016975 205 DHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS 247 (379)
Q Consensus 205 ~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~ 247 (379)
++.++++..+|+.|--+..+..---+..++..|+|+|+...|-
T Consensus 65 ~dl~~ll~~~DVVIDfT~p~a~~~~~~~al~~G~~vVigTTG~ 107 (272)
T 4f3y_A 65 DDIERVCAEADYLIDFTLPEGTLVHLDAALRHDVKLVIGTTGF 107 (272)
T ss_dssp CCHHHHHHHCSEEEECSCHHHHHHHHHHHHHHTCEEEECCCCC
T ss_pred CCHHHHhcCCCEEEEcCCHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 3445788899999977765555455678899999999977764
No 93
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=62.36 E-value=43 Score=24.44 Aligned_cols=103 Identities=12% Similarity=0.022 Sum_probs=61.7
Q ss_pred cEEEEEcCCcC-hHHHHHHHHhcCC--eeEEecCCCCHHHHHh---------hcCEEEecCCC-CcchhHHHHHHH----
Q 016975 173 LEVDLYGNGED-FNQIQEAAEKLKI--VVRVYPGRDHADLIFH---------DYKVFLNPSTT-DVVCTTTAEALA---- 235 (379)
Q Consensus 173 ~~l~i~G~g~~-~~~l~~~~~~~~l--~v~~~g~~~~~~~~~~---------~~dv~v~ps~~-E~~~~~~~EAma---- 235 (379)
.+++|+.+.+. ...+....+..+. .+.......+.-..+. ..|+++.=... +.-|+.+++.+.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~ 82 (140)
T 1k68_A 3 KKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDPT 82 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHSTT
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCcc
Confidence 46777776555 5567777777776 4443333222224444 35777764332 445667777664
Q ss_pred -cCCeEEecCC-Cc----ccccccCCCEEEeC--CHHHHHHHHHHHHh
Q 016975 236 -MGKIVVCANH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALA 275 (379)
Q Consensus 236 -~G~PVI~t~~-g~----~e~i~~~~~g~~~~--~~~~l~~~i~~~l~ 275 (379)
.++|||.-.. .. .+.+..+..+++.. +.+++..+|..++.
T Consensus 83 ~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 130 (140)
T 1k68_A 83 LKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEE 130 (140)
T ss_dssp GGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred cccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHH
Confidence 3567665433 33 23445566777766 99999999988765
No 94
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=62.07 E-value=57 Score=25.75 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=24.2
Q ss_pred HHHhhcCEEEecCC----CCcchhHHHH---HHHcCCeEEecC
Q 016975 209 LIFHDYKVFLNPST----TDVVCTTTAE---ALAMGKIVVCAN 244 (379)
Q Consensus 209 ~~~~~~dv~v~ps~----~E~~~~~~~E---Ama~G~PVI~t~ 244 (379)
..+..||++|.--. .+.-..+..| |.|.|||||+-.
T Consensus 63 ~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~AlgKPVi~l~ 105 (161)
T 2f62_A 63 QMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNKMVLTFT 105 (161)
T ss_dssp HHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCCCEEEEEE
Confidence 78999999875421 1222334444 689999999944
No 95
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=61.75 E-value=43 Score=24.68 Aligned_cols=107 Identities=10% Similarity=-0.067 Sum_probs=64.9
Q ss_pred CcEEEEEcCCcC-hHHHHHHHHh-cCCeeEEecCCCCHHHHHhh---cCEEEecCCC--CcchhHHHHHHHc-----CCe
Q 016975 172 GLEVDLYGNGED-FNQIQEAAEK-LKIVVRVYPGRDHADLIFHD---YKVFLNPSTT--DVVCTTTAEALAM-----GKI 239 (379)
Q Consensus 172 ~~~l~i~G~g~~-~~~l~~~~~~-~~l~v~~~g~~~~~~~~~~~---~dv~v~ps~~--E~~~~~~~EAma~-----G~P 239 (379)
..+++|+.+.+. ...++...++ .+.++.........-+.+.. .|+++.-... +.-|+.+++.+.. .+|
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~~ 83 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNSRTANTP 83 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTTCC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHhCcccCCCC
Confidence 356778876665 4556666766 66665533322222233433 5777765433 3456677776554 677
Q ss_pred EEecCC-Cc----ccccccCCCEEEeC--CHHHHHHHHHHHHhCCC
Q 016975 240 VVCANH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAEEP 278 (379)
Q Consensus 240 VI~t~~-g~----~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~ 278 (379)
||.... .. .+.+..+..+++.. +.+++.++|..++....
T Consensus 84 ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (140)
T 3lua_A 84 VIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQ 129 (140)
T ss_dssp EEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC--
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhcc
Confidence 776443 33 23455667777777 99999999999887543
No 96
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=61.59 E-value=43 Score=24.27 Aligned_cols=105 Identities=6% Similarity=0.018 Sum_probs=62.8
Q ss_pred CcEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHhh--cCEEEecCC-CCcchhHHHHHHHc-----CCeEEe
Q 016975 172 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPST-TDVVCTTTAEALAM-----GKIVVC 242 (379)
Q Consensus 172 ~~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~--~dv~v~ps~-~E~~~~~~~EAma~-----G~PVI~ 242 (379)
..+++|+.+.+. ...+.....+.+..+.........-+.+.. .|+++.-.. .+.-|+.+++.+.. ..|||.
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~ 85 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPKILV 85 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCEEEE
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCccCCCeEEE
Confidence 456778776555 455666666666665544322222233332 377665433 35567778877753 356666
Q ss_pred cCCCc----ccccccCCCEEEeC--CHHHHHHHHHHHHhC
Q 016975 243 ANHPS----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 276 (379)
Q Consensus 243 t~~g~----~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~ 276 (379)
+.... .+.+..+..+++.. +++++.++|.+....
T Consensus 86 ~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 125 (132)
T 3lte_A 86 VSGLDKAKLQQAVTEGADDYLEKPFDNDALLDRIHDLVNE 125 (132)
T ss_dssp ECCSCSHHHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC-
T ss_pred EeCCChHHHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCC
Confidence 55422 23455667777776 999999999987764
No 97
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=61.25 E-value=77 Score=27.00 Aligned_cols=149 Identities=7% Similarity=-0.117 Sum_probs=67.2
Q ss_pred hcCEEEecCCCCcchhHHH-HHHHcCCeEEecCCCcccccccCCCEEEeCCHHHHHHHHHHHHhCCCCCCcHHHHhcCCH
Q 016975 213 DYKVFLNPSTTDVVCTTTA-EALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEEPALPTEAQRHQLSW 291 (379)
Q Consensus 213 ~~dv~v~ps~~E~~~~~~~-EAma~G~PVI~t~~g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~sw 291 (379)
..|.+|..+.... ...++ ++...|+|||..+....+ .....+..++.+....+...+++....++.--.- ..+.
T Consensus 76 ~vdgii~~~~~~~-~~~~~~~~~~~~iPvV~~~~~~~~---~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~-~~~~ 150 (293)
T 2iks_A 76 QVDAIIVSTSLPP-EHPFYQRWANDPFPIVALDRALDR---EHFTSVVGADQDDAEMLAEELRKFPAETVLYLGA-LPEL 150 (293)
T ss_dssp TCSEEEECCSSCT-TCHHHHTTTTSSSCEEEEESCCCT---TTCEEEEECHHHHHHHHHHHHHTSCCSSEEEEEE-CTTS
T ss_pred CCCEEEEeCCCCC-cHHHHHHHHhCCCCEEEECCccCc---CCCCEEEecCHHHHHHHHHHHHHCCCCEEEEEec-Cccc
Confidence 4566655432211 11233 344679999998763221 1122344556666666777776653332211000 0111
Q ss_pred HHHHHHHHHHHhcccccccCCCCCCCccccccchhHHHhHHHHHHHHHHHhcCCcccceeecccCCCCCchHHHHHHhCC
Q 016975 292 ESATERFLQVAELDQAVVKKPSKSPSKHFASTSLNLKKNMEEASAYVHFLASGFETSRRAFGAIPGSLHPDEELCKELGL 371 (379)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 371 (379)
....+|+ +-|..+..+... . ... ...... ..+.+...+..++...+....+|+.....-.-..+.+++.|+
T Consensus 151 ~~~~~R~-~Gf~~~l~~~g~--~---~~~-~~~~~~--~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~ 221 (293)
T 2iks_A 151 SVSFLRE-QGFRTAWKDDPR--E---VHF-LYANSY--EREAAAQLFEKWLETHPMPQALFTTSFALLQGVMDVTLRRDG 221 (293)
T ss_dssp HHHHHHH-HHHHHHHTTCCC--C---EEE-EEESSS--CHHHHHHHHHHHTTTSCCCSEEEESSHHHHHHHHHHHHHHHS
T ss_pred ccHHHHH-HHHHHHHHHcCC--C---ccE-EEcCCC--ChhhHHHHHHHHHhcCCCCCEEEECChHHHHHHHHHHHHcCC
Confidence 2222333 222222211110 0 000 000011 123455556666665554566776544333345678888898
Q ss_pred CCCC
Q 016975 372 VTPM 375 (379)
Q Consensus 372 ~~~~ 375 (379)
..|+
T Consensus 222 ~vP~ 225 (293)
T 2iks_A 222 KLPS 225 (293)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 7663
No 98
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=61.02 E-value=47 Score=24.49 Aligned_cols=108 Identities=11% Similarity=-0.001 Sum_probs=61.5
Q ss_pred CcEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHhh--cCEEEecCCCCcchhHHHHHHH---cCCeEEecCC
Q 016975 172 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPSTTDVVCTTTAEALA---MGKIVVCANH 245 (379)
Q Consensus 172 ~~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~--~dv~v~ps~~E~~~~~~~EAma---~G~PVI~t~~ 245 (379)
..+++|+.+.+. ...+....++.+.++.......+.-..+.. .|+++.-...+.-|+.+++.+. ..+|||....
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~~~~~g~~~~~~l~~~~~~~pii~ls~ 83 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRREKIDLVFVDVFEGEESLNLIRRIREEFPDTKVAVLSA 83 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTSCCSEEEEECTTTHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhccCCCEEEEeCCCCCcHHHHHHHHHHHCCCCCEEEEEC
Confidence 356777776554 455666677666665533322222234433 4777654422334555666553 3577775433
Q ss_pred -Ccc----cccccCCCEEEeC--CHHHHHHHHHHHHhCCCC
Q 016975 246 -PSN----DFFKQFPNCRTYD--DRNGFVEATLKALAEEPA 279 (379)
Q Consensus 246 -g~~----e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~~ 279 (379)
... +.+..+..+++.. +.+++.++|..++.....
T Consensus 84 ~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 124 (142)
T 2qxy_A 84 YVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISSTPR 124 (142)
T ss_dssp CCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC---
T ss_pred CCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhccc
Confidence 332 2345566666666 999999999998876443
No 99
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=60.76 E-value=29 Score=31.43 Aligned_cols=100 Identities=13% Similarity=0.096 Sum_probs=59.4
Q ss_pred cceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhh--cCEEE
Q 016975 141 AKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFL 218 (379)
Q Consensus 141 ~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~--~dv~v 218 (379)
+..|..||--...+.+...+..+..+....++++++-+-+. +.+..++.+++.+.. .+ ..+.++++.. .|+++
T Consensus 25 kirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~-~~~~a~~~a~~~g~~-~~---y~d~~ell~~~~iDaV~ 99 (393)
T 4fb5_A 25 PLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEA-NAGLAEARAGEFGFE-KA---TADWRALIADPEVDVVS 99 (393)
T ss_dssp CCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC---TTHHHHHHHHTCS-EE---ESCHHHHHHCTTCCEEE
T ss_pred CccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECC-CHHHHHHHHHHhCCC-ee---cCCHHHHhcCCCCcEEE
Confidence 44677777422223232223333333333466777655443 334556667776653 22 2455677765 48888
Q ss_pred ecCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 219 NPSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 219 ~ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
..+....-.-.+.+|+..|++|+|=..
T Consensus 100 IatP~~~H~~~a~~al~aGkhVl~EKP 126 (393)
T 4fb5_A 100 VTTPNQFHAEMAIAALEAGKHVWCEKP 126 (393)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEEECSC
T ss_pred ECCChHHHHHHHHHHHhcCCeEEEccC
Confidence 887776666678999999999999665
No 100
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=60.23 E-value=22 Score=26.10 Aligned_cols=70 Identities=16% Similarity=0.116 Sum_probs=44.7
Q ss_pred EEEEcCCcC----hHHHHHHHHhcCCeeEEec-CCCCHHHHHhhcCEEEecCCCCcchhHHHHHHH--cCCeEEecCC
Q 016975 175 VDLYGNGED----FNQIQEAAEKLKIVVRVYP-GRDHADLIFHDYKVFLNPSTTDVVCTTTAEALA--MGKIVVCANH 245 (379)
Q Consensus 175 l~i~G~g~~----~~~l~~~~~~~~l~v~~~g-~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma--~G~PVI~t~~ 245 (379)
+++++.|-. -..+++.+++.++++.+.. .....++.+..+|+++..... .|-..=++..+ .|+||...+.
T Consensus 10 lL~C~aGmSTsllv~km~~~a~~~gi~v~i~a~~~~~~~~~~~~~DvvLLgPQV-~y~~~~ik~~~~~~~ipV~vI~~ 86 (108)
T 3nbm_A 10 LVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILAPQV-RSYYREMKVDAERLGIQIVATRG 86 (108)
T ss_dssp EEEESSSSHHHHHHHHHHHHHHHHTCSEEEEEEETTSCTTTGGGCSEEEECGGG-GGGHHHHHHHHTTTTCEEEECCH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCceEEEEcchHHHHhhccCCCEEEEChHH-HHHHHHHHHHhhhcCCcEEEeCH
Confidence 666777654 3557778888898888753 233344567889999875432 22333344444 4899988654
No 101
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=59.82 E-value=39 Score=28.39 Aligned_cols=89 Identities=8% Similarity=0.047 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhHhhcCCcEEEEEcCCc---C----hHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCCCCcc--
Q 016975 156 YKELLELLDDHQKELAGLEVDLYGNGE---D----FNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVV-- 226 (379)
Q Consensus 156 ~~~li~a~~~l~~~~~~~~l~i~G~g~---~----~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~-- 226 (379)
++.+.+++..+... +-++.|+..+. + ...+.+..+++|.++...-..++..+.+..+|.+++|- -+.+
T Consensus 17 l~~~~~~l~~~~~~--~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~d~~~~l~~ad~I~lpG-G~~~~~ 93 (229)
T 1fy2_A 17 LEHALPLIANQLNG--RRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAIEKAEIIIVGG-GNTFQL 93 (229)
T ss_dssp TTTTHHHHHHHHTT--CCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSSCHHHHHHHCSEEEECC-SCHHHH
T ss_pred HHHHHHHHHHHhcC--CCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEeccccHHHHHhcCCEEEECC-CcHHHH
Confidence 33445555555432 45677766442 2 34456666777776555533344547789999999997 3322
Q ss_pred ---------hhHHHHHHHcCCeEEecCCCc
Q 016975 227 ---------CTTTAEALAMGKIVVCANHPS 247 (379)
Q Consensus 227 ---------~~~~~EAma~G~PVI~t~~g~ 247 (379)
--.+-|+...|+|++.+-.|+
T Consensus 94 ~~~l~~~gl~~~l~~~~~~G~p~~G~sAG~ 123 (229)
T 1fy2_A 94 LKESRERGLLAPMADRVKRGALYIGWSAGA 123 (229)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCEEEEETHHH
T ss_pred HHHHHHCChHHHHHHHHHcCCEEEEECHHH
Confidence 224677888999999998776
No 102
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=59.13 E-value=47 Score=25.03 Aligned_cols=105 Identities=9% Similarity=-0.015 Sum_probs=60.3
Q ss_pred CcEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHh--hcCEEEecCC-CCcchhHHHHHHH---cCCeEEecC
Q 016975 172 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPST-TDVVCTTTAEALA---MGKIVVCAN 244 (379)
Q Consensus 172 ~~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~--~~dv~v~ps~-~E~~~~~~~EAma---~G~PVI~t~ 244 (379)
..+++|+.+.+. ...+.......+..+.........-..+. ..|+++.-.. .+.-|+.+++.+. .++|||...
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dliild~~l~~~~g~~~~~~l~~~~~~~pii~ls 82 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRMPGMDGLALFRKILALDPDLPMILVT 82 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEE
Confidence 356777776655 45566667766766553322111112222 2477765433 3445666666653 367777544
Q ss_pred C-Cc----ccccccCCCEEEeC--CHHHHHHHHHHHHhC
Q 016975 245 H-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 276 (379)
Q Consensus 245 ~-g~----~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~ 276 (379)
. .. .+.+..+..+++.. +.+++..+|..++..
T Consensus 83 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 121 (155)
T 1qkk_A 83 GHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEK 121 (155)
T ss_dssp CGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Confidence 3 32 23445666777766 999999999987653
No 103
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=58.99 E-value=50 Score=24.18 Aligned_cols=103 Identities=12% Similarity=0.125 Sum_probs=57.5
Q ss_pred CCcEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHhh--cCEEEecCCCCcchhHHHHHHH--c-CCeEEecC
Q 016975 171 AGLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPSTTDVVCTTTAEALA--M-GKIVVCAN 244 (379)
Q Consensus 171 ~~~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~--~dv~v~ps~~E~~~~~~~EAma--~-G~PVI~t~ 244 (379)
...+++|+.+.+. ...+....+..+..+.......+.-..+.. .|++++| +.-|+.+++.+. . .+|||...
T Consensus 17 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi~~---~~~g~~~~~~l~~~~~~~~ii~ls 93 (137)
T 2pln_A 17 GSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVMVS---DKNALSFVSRIKEKHSSIVVLVSS 93 (137)
T ss_dssp TCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHSCCSEEEEC---STTHHHHHHHHHHHSTTSEEEEEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHcCCCCEEEEc---CccHHHHHHHHHhcCCCccEEEEe
Confidence 3466777776554 445566666666555433322222233332 4888733 334555666554 3 67777543
Q ss_pred C-Cc----ccccccCCCEEEeC---CHHHHHHHHHHHHhC
Q 016975 245 H-PS----NDFFKQFPNCRTYD---DRNGFVEATLKALAE 276 (379)
Q Consensus 245 ~-g~----~e~i~~~~~g~~~~---~~~~l~~~i~~~l~~ 276 (379)
. .. .+.+..+..+++.. +.+++..+|..++..
T Consensus 94 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 133 (137)
T 2pln_A 94 DNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRF 133 (137)
T ss_dssp SSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC-
T ss_pred CCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHhh
Confidence 3 33 23445566676665 678999999887654
No 104
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=58.90 E-value=14 Score=30.36 Aligned_cols=62 Identities=15% Similarity=0.065 Sum_probs=40.0
Q ss_pred HHHhhcCEEEecCCCCcchh--HHHHHHHcCCeEEecCC-Cc-cccc----------ccC-CCE-EEeCCHHHHHHHHHH
Q 016975 209 LIFHDYKVFLNPSTTDVVCT--TTAEALAMGKIVVCANH-PS-NDFF----------KQF-PNC-RTYDDRNGFVEATLK 272 (379)
Q Consensus 209 ~~~~~~dv~v~ps~~E~~~~--~~~EAma~G~PVI~t~~-g~-~e~i----------~~~-~~g-~~~~~~~~l~~~i~~ 272 (379)
-+...+|.||... .++|. .+.||+..|+||++-+. |. .+.+ ... ... .+++|++++.+.|.+
T Consensus 114 ~m~~~sda~Ivlp--GG~GTL~E~~eal~~~kPV~lln~~g~w~~~l~~~~~~G~fi~~~~~~~i~~~~~~ee~~~~l~~ 191 (195)
T 1rcu_A 114 VLLRNADVVVSIG--GEIGTAIEILGAYALGKPVILLRGTGGWTDRISQVLIDGKYLDNRRIVEIHQAWTVEEAVQIIEQ 191 (195)
T ss_dssp HHHTTCSEEEEES--CCHHHHHHHHHHHHTTCCEEEETTSCHHHHHGGGGCBTTTBSSTTCCSCEEEESSHHHHHHHHHT
T ss_pred HHHHhCCEEEEec--CCCcHHHHHHHHHhcCCCEEEECCCCccHHHHHHHHHcCCcCCHHHcCeEEEeCCHHHHHHHHHH
Confidence 5666778887542 23553 47899999999999976 54 2222 111 112 445599999888765
No 105
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=58.74 E-value=49 Score=23.98 Aligned_cols=90 Identities=13% Similarity=0.181 Sum_probs=52.8
Q ss_pred EEEEcCCcC----hHHHHHHHHhcCCeeEEe-cCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHH--cCCeEEecCCCc
Q 016975 175 VDLYGNGED----FNQIQEAAEKLKIVVRVY-PGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALA--MGKIVVCANHPS 247 (379)
Q Consensus 175 l~i~G~g~~----~~~l~~~~~~~~l~v~~~-g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma--~G~PVI~t~~g~ 247 (379)
++++|.|-. ...+++.+++.++++.+. -.+.+.+..+..+|+++.+...... ..-++..+ .|+||+.-+.
T Consensus 8 lvvC~~G~~TSll~~kl~~~~~~~gi~~~i~~~~~~~~~~~~~~~D~Ii~t~~l~~~-~~~~~~~~~~~~~pv~~I~~-- 84 (109)
T 2l2q_A 8 LLVCGAGMSTSMLVQRIEKYAKSKNINATIEAIAETRLSEVVDRFDVVLLAPQSRFN-KKRLEEITKPKGIPIEIINT-- 84 (109)
T ss_dssp EEESSSSCSSCHHHHHHHHHHHHHTCSEEEEEECSTTHHHHTTTCSEEEECSCCSSH-HHHHHHHHHHHTCCEEECCH--
T ss_pred EEECCChHhHHHHHHHHHHHHHHCCCCeEEEEecHHHHHhhcCCCCEEEECCccHHH-HHHHHHHhcccCCCEEEECh--
Confidence 667776654 456777778888765554 3444555567889999887654322 33344333 5899987443
Q ss_pred ccccccCCCEEEeCCHHHHHHHHHHHHh
Q 016975 248 NDFFKQFPNCRTYDDRNGFVEATLKALA 275 (379)
Q Consensus 248 ~e~i~~~~~g~~~~~~~~l~~~i~~~l~ 275 (379)
..+. .-|.+++.+.+.+++.
T Consensus 85 ~~y~--------~~d~~~vl~~i~~~l~ 104 (109)
T 2l2q_A 85 IDYG--------TMNGEKVLQLAINAFN 104 (109)
T ss_dssp HHHH--------HTCHHHHHHHHHHHHH
T ss_pred HHhc--------cCCHHHHHHHHHHHHh
Confidence 1110 0145666666666654
No 106
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=58.72 E-value=50 Score=24.09 Aligned_cols=106 Identities=10% Similarity=-0.028 Sum_probs=64.5
Q ss_pred CcEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHhh---cCEEEecCC-CCcchhHHHHHHHc----CCeEEe
Q 016975 172 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD---YKVFLNPST-TDVVCTTTAEALAM----GKIVVC 242 (379)
Q Consensus 172 ~~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~---~dv~v~ps~-~E~~~~~~~EAma~----G~PVI~ 242 (379)
..+++|+.+.+. ...+....++.+.++............+.. .|+++.=.. .+.-|+.+++.+.. .+|||.
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ii~ 86 (136)
T 3hdv_A 7 RPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASERAALSIIV 86 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTSTTTTCEEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhcCCCCCCEEE
Confidence 467888887665 455677777777665543322222233332 466665433 35567778877753 467766
Q ss_pred cCC-Cc----ccccccCCCEEEeC--CHHHHHHHHHHHHhCC
Q 016975 243 ANH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAEE 277 (379)
Q Consensus 243 t~~-g~----~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~ 277 (379)
... .. .+.+..+..+++.. +.++|.++|.++....
T Consensus 87 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (136)
T 3hdv_A 87 VSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIG 128 (136)
T ss_dssp EESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred EeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCc
Confidence 444 33 23455567777777 9999999999987754
No 107
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=58.67 E-value=55 Score=24.53 Aligned_cols=104 Identities=9% Similarity=0.040 Sum_probs=62.2
Q ss_pred CcEEEEEcCCcC-hHHHHHHHHhcCC--eeEEecCCCCHHHHHh-----------hcCEEEecC-CCCcchhHHHHHHHc
Q 016975 172 GLEVDLYGNGED-FNQIQEAAEKLKI--VVRVYPGRDHADLIFH-----------DYKVFLNPS-TTDVVCTTTAEALAM 236 (379)
Q Consensus 172 ~~~l~i~G~g~~-~~~l~~~~~~~~l--~v~~~g~~~~~~~~~~-----------~~dv~v~ps-~~E~~~~~~~EAma~ 236 (379)
..+++|+.+.+. ...++...++.+. .+.........-+.+. ..|+++.=. ..+.-|+.+++.+..
T Consensus 4 ~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr~ 83 (152)
T 3heb_A 4 SVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVKE 83 (152)
T ss_dssp -CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHHh
Confidence 357788876655 5567777777776 4443332222224442 347766543 235567778877654
Q ss_pred -----CCeEEecCC-Ccc----cccccCCCEEEeC--CHHHHHHHHHHHHh
Q 016975 237 -----GKIVVCANH-PSN----DFFKQFPNCRTYD--DRNGFVEATLKALA 275 (379)
Q Consensus 237 -----G~PVI~t~~-g~~----e~i~~~~~g~~~~--~~~~l~~~i~~~l~ 275 (379)
++|||.... ... +.+..+..+++.. +++++.++|.++..
T Consensus 84 ~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 134 (152)
T 3heb_A 84 NPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGL 134 (152)
T ss_dssp STTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred cccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 566665433 332 2445666777776 99999999888754
No 108
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=58.39 E-value=56 Score=24.48 Aligned_cols=104 Identities=8% Similarity=-0.015 Sum_probs=58.7
Q ss_pred cEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHH---HHHhh--cCEEEecCC-CCcchhHHHHHHHc---CCeEEe
Q 016975 173 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHAD---LIFHD--YKVFLNPST-TDVVCTTTAEALAM---GKIVVC 242 (379)
Q Consensus 173 ~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~---~~~~~--~dv~v~ps~-~E~~~~~~~EAma~---G~PVI~ 242 (379)
.+++|+.+.+. ...+.......+....+. ...+.+ +.+.. .|+++.=.. .+.-|+.+++.+.. .+|||.
T Consensus 21 ~~iLivdd~~~~~~~l~~~L~~~~~~~~v~-~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 99 (150)
T 4e7p_A 21 MKVLVAEDQSMLRDAMCQLLTLQPDVESVL-QAKNGQEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVV 99 (150)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEE-EESSHHHHHHHHTTSCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCCcEEEE-EECCHHHHHHHhhccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEE
Confidence 56777766554 344555555444211111 122222 33333 377665433 34556667766543 566665
Q ss_pred cCC-Cc----ccccccCCCEEEeC--CHHHHHHHHHHHHhCC
Q 016975 243 ANH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAEE 277 (379)
Q Consensus 243 t~~-g~----~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~ 277 (379)
... .. .+.+..+..+++.. +.+++.++|..++...
T Consensus 100 ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 141 (150)
T 4e7p_A 100 VTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGR 141 (150)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTC
T ss_pred EeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCC
Confidence 443 33 23455667777777 9999999999988764
No 109
>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta protein, lyase, aromatic amino acid biosynthesis; 1.5A {Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB: 1h0r_A* 1h0s_A* 2dhq_A 2xb8_A* 2y71_A* 2y76_A* 2y77_A* 3n76_A* 3n7a_A* 3n86_A* 3n87_A* 3n8n_A*
Probab=58.33 E-value=22 Score=27.59 Aligned_cols=91 Identities=13% Similarity=0.109 Sum_probs=57.8
Q ss_pred HHHHHHHHhcCCeeEEecCCCCHH--HHHhhc-----CEEEecCCCCcchhHHHHHH-HcCCeEEecCCC---cccc---
Q 016975 185 NQIQEAAEKLKIVVRVYPGRDHAD--LIFHDY-----KVFLNPSTTDVVCTTTAEAL-AMGKIVVCANHP---SNDF--- 250 (379)
Q Consensus 185 ~~l~~~~~~~~l~v~~~g~~~~~~--~~~~~~-----dv~v~ps~~E~~~~~~~EAm-a~G~PVI~t~~g---~~e~--- 250 (379)
..+++.++++|..+.++-.=..-+ +.++.+ .+.+||.-+--.+.++.+|+ +.++|+|=-... .+|.
T Consensus 34 ~~l~~~a~~~g~~~~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSvAlrDAl~~v~~P~VEVHiSNi~aRE~FRh 113 (146)
T 1h05_A 34 ALIEREAAELGLKAVVRQSDSEAQLLDWIHQAADAAEPVILNAGGLTHTSVALRDACAELSAPLIEVHISNVHAREEFRR 113 (146)
T ss_dssp HHHHHHHHHTTCEEEEEECSCHHHHHHHHHHHHHHTCCEEEECGGGGGTCHHHHHHHHTCCSCEEEEESSCGGGSCGGGG
T ss_pred HHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEECchhhccccHHHHHHHHhCCCCEEEEEecCccccccccc
Confidence 345556677777777663222222 334333 57899988888899999997 568899865542 2553
Q ss_pred ---cccCCCEEEeC-CHHHHHHHHHHHHh
Q 016975 251 ---FKQFPNCRTYD-DRNGFVEATLKALA 275 (379)
Q Consensus 251 ---i~~~~~g~~~~-~~~~l~~~i~~~l~ 275 (379)
+.+--.|.+.- -.+...-++..++.
T Consensus 114 ~S~~s~~a~GvI~G~G~~gY~lAl~~~~~ 142 (146)
T 1h05_A 114 HSYLSPIATGVIVGLGIQGYLLALRYLAE 142 (146)
T ss_dssp CCSSGGGSSEEEESSTTHHHHHHHHHHHH
T ss_pred ccccccceeEEEEecCHHHHHHHHHHHHH
Confidence 33445677776 66666666666543
No 110
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=58.21 E-value=48 Score=23.64 Aligned_cols=105 Identities=10% Similarity=0.009 Sum_probs=62.1
Q ss_pred cEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHh--hcCEEEecCC-C-CcchhHHHHHHH-----cCCeEEe
Q 016975 173 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPST-T-DVVCTTTAEALA-----MGKIVVC 242 (379)
Q Consensus 173 ~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~--~~dv~v~ps~-~-E~~~~~~~EAma-----~G~PVI~ 242 (379)
.+++++.+.+. ...+....++.+.++.........-..+. ..|+++.-.. . +.-|..+++.+. ..+|||.
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~ii~ 85 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPIVI 85 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCEEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCEEE
Confidence 46777776554 45566666666666553332222223333 2477765332 2 345667777764 4688888
Q ss_pred cCCCc----ccccccCCCEEEeC--CHHHHHHHHHHHHhCC
Q 016975 243 ANHPS----NDFFKQFPNCRTYD--DRNGFVEATLKALAEE 277 (379)
Q Consensus 243 t~~g~----~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~ 277 (379)
..... .+.+..+..+++.. +.+++.+++..++..+
T Consensus 86 ~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 126 (127)
T 2gkg_A 86 IGNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIGFP 126 (127)
T ss_dssp EECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHCCC
T ss_pred EecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHcCC
Confidence 72222 22445556677766 9999999999987653
No 111
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=57.86 E-value=57 Score=24.46 Aligned_cols=107 Identities=11% Similarity=-0.073 Sum_probs=59.5
Q ss_pred CcEEEEEcCCcC-hHHHHHHHHhc-CC-eeEEecCCCCHHHHHhh---cCEEEecCCC-CcchhHHHHHHH---cCCeEE
Q 016975 172 GLEVDLYGNGED-FNQIQEAAEKL-KI-VVRVYPGRDHADLIFHD---YKVFLNPSTT-DVVCTTTAEALA---MGKIVV 241 (379)
Q Consensus 172 ~~~l~i~G~g~~-~~~l~~~~~~~-~l-~v~~~g~~~~~~~~~~~---~dv~v~ps~~-E~~~~~~~EAma---~G~PVI 241 (379)
..+++|+.+.+. ...+....++. +. .+.......+.-..+.. .|+++.-... +.-|+.+++.+. .++|||
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 82 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNLPDAEAIDGLVRLKRFDPSNAVA 82 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCCCSEEEECC------CHHHHHHHHHHCTTSEEE
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhccCCCCEEEEeCCCCCCchHHHHHHHHHhCCCCeEE
Confidence 456778776655 45566666665 54 33333332222245544 4777764332 334566666654 367877
Q ss_pred ecCC-Cc----ccccccCCCEEEeC--CHHHHHHHHHHHHhCCC
Q 016975 242 CANH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAEEP 278 (379)
Q Consensus 242 ~t~~-g~----~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~ 278 (379)
.... .. .+.+..+..+++.. +.+++.++|..++....
T Consensus 83 ~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~~ 126 (154)
T 2qsj_A 83 LISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGEI 126 (154)
T ss_dssp EC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTCC
T ss_pred EEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCCE
Confidence 6543 32 22445566666666 99999999999887644
No 112
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=57.76 E-value=54 Score=24.13 Aligned_cols=106 Identities=8% Similarity=-0.043 Sum_probs=62.1
Q ss_pred CcEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHhh--cCEEEecCC-CCcchhHHHHHHHc-----CCeEEe
Q 016975 172 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPST-TDVVCTTTAEALAM-----GKIVVC 242 (379)
Q Consensus 172 ~~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~--~dv~v~ps~-~E~~~~~~~EAma~-----G~PVI~ 242 (379)
..+++|+.+.+. ...+....++.+..+.........-+.+.. .|+++.=.. -+.-|+.+++.+.. .+|||.
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pii~ 83 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPILM 83 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccEEE
Confidence 356777776555 455666666666655433221111133333 377775433 24456777776643 567765
Q ss_pred cCC-Ccc----cccccCCCEEEeC--CHHHHHHHHHHHHhCC
Q 016975 243 ANH-PSN----DFFKQFPNCRTYD--DRNGFVEATLKALAEE 277 (379)
Q Consensus 243 t~~-g~~----e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~ 277 (379)
... +.. +.+..+..+++.. +++++..++..++...
T Consensus 84 ~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~ 125 (136)
T 3t6k_A 84 LTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILART 125 (136)
T ss_dssp EECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC-
T ss_pred EecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhcc
Confidence 433 332 3455667777777 9999999999988753
No 113
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 1.60A {Bifidobacterium longum} SCOP: c.23.13.0
Probab=57.75 E-value=30 Score=27.01 Aligned_cols=89 Identities=17% Similarity=0.121 Sum_probs=52.9
Q ss_pred HHHHHHHhcCCeeEEecCCCCHH--HHHhhc-----CEEEecCCCCcchhHHHHHH----HcCCeEEecCC---Cccc--
Q 016975 186 QIQEAAEKLKIVVRVYPGRDHAD--LIFHDY-----KVFLNPSTTDVVCTTTAEAL----AMGKIVVCANH---PSND-- 249 (379)
Q Consensus 186 ~l~~~~~~~~l~v~~~g~~~~~~--~~~~~~-----dv~v~ps~~E~~~~~~~EAm----a~G~PVI~t~~---g~~e-- 249 (379)
.+++.+.++|..+.++-.=..-+ +.++.+ .+.+||.-+--.+.++.+|+ +.++|+|=-.. -..|
T Consensus 37 ~l~~~a~~~g~~v~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSvAlrDAl~~l~~~~~P~VEVHiSNi~aRE~F 116 (151)
T 3u80_A 37 LCAEWGKDLGLEVEVRQTDDEAEMVRWMHQAADEKTPVVMNPAAFTHYSYALADAAHMVIDENLPLMEVHISNPSARDEF 116 (151)
T ss_dssp HHHHHHHHTTEEEEEEECSCHHHHHHHHHHHHHHTCCEEEECTTCCSCCHHHHHHHHHHHHTTCCEEEEESSCCC-----
T ss_pred HHHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCcEEEECcchhhhhhHHHHHHHHHHhhcCCCEEEEEcCCcccccch
Confidence 34455566666666652211111 333333 58899998888899999994 45999986554 2355
Q ss_pred ----ccccCCCEEEeC-CHHHHHHHHHHHH
Q 016975 250 ----FFKQFPNCRTYD-DRNGFVEATLKAL 274 (379)
Q Consensus 250 ----~i~~~~~g~~~~-~~~~l~~~i~~~l 274 (379)
++.+--.|.+.- -.+...-++..++
T Consensus 117 Rh~S~~s~~a~G~I~G~G~~gY~lAl~~~~ 146 (151)
T 3u80_A 117 RKRSVISPVATGTITGMGFYGYKLALDAVA 146 (151)
T ss_dssp ----CSCCCCSEEEESSTTHHHHHHHHHHH
T ss_pred hhcccccccceEEEEecChHHHHHHHHHHH
Confidence 444445677766 5666666655543
No 114
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=57.44 E-value=10 Score=32.51 Aligned_cols=94 Identities=11% Similarity=0.069 Sum_probs=56.6
Q ss_pred ccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcC-hHHHHHHHHhcCC---eeEEecCC-CCHH-HHHhhcCEEEecCCCC
Q 016975 151 VWSKGYKELLELLDDHQKELAGLEVDLYGNGED-FNQIQEAAEKLKI---VVRVYPGR-DHAD-LIFHDYKVFLNPSTTD 224 (379)
Q Consensus 151 ~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~l---~v~~~g~~-~~~~-~~~~~~dv~v~ps~~E 224 (379)
+-.|=+..|.+|+..+..-...-+++++|..+. ...+++.++..|. +-+|+|+. .+.. .-++.=|+++.....+
T Consensus 83 dL~kT~~~L~~A~~~i~~~~~~~~iLfVgTk~~aq~~V~~~A~~~g~~yv~~RWlgG~LTN~~~~~f~~PdlliV~Dp~~ 162 (253)
T 3bch_A 83 NLKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRA 162 (253)
T ss_dssp CHHHHHHHHHHHHHHHHTCSSGGGEEEEECSHHHHHHHHHHHHHHCCEEEESCCCTTTTTCCSCSTTCSCSEEEESCTTT
T ss_pred eHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHhCCeeecceecCCcccCccccccCCCCEEEEECCCc
Confidence 334555666666666652112345888897765 3446666766664 33566553 3322 3344457777664332
Q ss_pred cchhHHHHHHHcCCeEEecCC
Q 016975 225 VVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 225 ~~~~~~~EAma~G~PVI~t~~ 245 (379)
. -.++.||...|+|||+--.
T Consensus 163 e-~~AI~EA~~lgIPvIalvD 182 (253)
T 3bch_A 163 D-HQPLTEASYVNLPTIALCN 182 (253)
T ss_dssp T-HHHHHHHHHTTCCEEEEEC
T ss_pred c-chHHHHHHHhCCCEEEEEc
Confidence 1 3579999999999998644
No 115
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=57.04 E-value=16 Score=30.24 Aligned_cols=91 Identities=14% Similarity=0.012 Sum_probs=56.9
Q ss_pred ccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcC-hHHHHHHHHhcCC---eeEEecCC-CCHH-HHHhhcCEEEecCCCC
Q 016975 151 VWSKGYKELLELLDDHQKELAGLEVDLYGNGED-FNQIQEAAEKLKI---VVRVYPGR-DHAD-LIFHDYKVFLNPSTTD 224 (379)
Q Consensus 151 ~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~l---~v~~~g~~-~~~~-~~~~~~dv~v~ps~~E 224 (379)
+-.|=++.|..|+..+.... .-.++++|..+. ...+.+.++..|. +-+|.|+. .+.. +-+..=|+++.....+
T Consensus 44 dL~kT~~~L~~A~~~i~~~~-~~~ilfV~tk~~~~~~V~k~A~~~g~~~v~~rw~gG~lTN~~~~~~~~Pdllvv~Dp~~ 122 (202)
T 3j20_B 44 DVRKTDERLKVAGKFLAKFE-PQSILAVSVRLYGQKPVKKFGEVTGARAIPGRFLPGTMTNPAVKNFFEPDVLIVTDPRA 122 (202)
T ss_dssp CHHHHHHHHHHHHHHHHHSC-SSCEEEECCCTTTHHHHHHHHHHHSCCCCCSSCCSSSSSCSSSSSCCCCSEEEESCTTT
T ss_pred CHHHHHHHHHHHHHHHHhhC-CCeEEEEecChHHHHHHHHHHHHHCCceeCceecCCCcccHhHHhccCCCeEEEeCCcc
Confidence 34566667777777665543 356888998776 4456666666553 44677553 3332 3334447776664332
Q ss_pred cchhHHHHHHHcCCeEEec
Q 016975 225 VVCTTTAEALAMGKIVVCA 243 (379)
Q Consensus 225 ~~~~~~~EAma~G~PVI~t 243 (379)
=-.++.||...|+|+|+-
T Consensus 123 -d~~ai~EA~~l~IP~Ial 140 (202)
T 3j20_B 123 -DHQAMREAVEIGIPIVAL 140 (202)
T ss_dssp -SHHHHHHHHHHTCCEEEE
T ss_pred -chHHHHHHHHcCCCEEEE
Confidence 135689999999999973
No 116
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=56.66 E-value=38 Score=29.67 Aligned_cols=70 Identities=11% Similarity=0.035 Sum_probs=49.2
Q ss_pred cCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 170 LAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 170 ~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
.++++++-+-+ .+.+..++.+++.+... ..+.++++...|+++..+....-.-.+.+|+..|++|++-..
T Consensus 29 ~~~~~l~av~d-~~~~~~~~~a~~~~~~~-----~~~~~~ll~~~D~V~i~tp~~~h~~~~~~al~~gk~vl~EKP 98 (308)
T 3uuw_A 29 SERFEFVGAFT-PNKVKREKICSDYRIMP-----FDSIESLAKKCDCIFLHSSTETHYEIIKILLNLGVHVYVDKP 98 (308)
T ss_dssp CSSSEEEEEEC-SCHHHHHHHHHHHTCCB-----CSCHHHHHTTCSEEEECCCGGGHHHHHHHHHHTTCEEEECSS
T ss_pred CCCeEEEEEEC-CCHHHHHHHHHHcCCCC-----cCCHHHHHhcCCEEEEeCCcHhHHHHHHHHHHCCCcEEEcCC
Confidence 46777764443 34456666676666431 455667888899999887776666667899999999998654
No 117
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=56.00 E-value=10 Score=30.72 Aligned_cols=66 Identities=24% Similarity=0.197 Sum_probs=43.4
Q ss_pred HHHhhcCEEEecCCCCcchh--HHHHHHHcCCeEEecCC-Cc-ccccccC--CCEEEeCCHHHHHHHHHHHHhC
Q 016975 209 LIFHDYKVFLNPSTTDVVCT--TTAEALAMGKIVVCANH-PS-NDFFKQF--PNCRTYDDRNGFVEATLKALAE 276 (379)
Q Consensus 209 ~~~~~~dv~v~ps~~E~~~~--~~~EAma~G~PVI~t~~-g~-~e~i~~~--~~g~~~~~~~~l~~~i~~~l~~ 276 (379)
-+...+|.+|.-. .++|. .+.||+..|+||++-+. +. ..++.+. ..-.+.+|++++.+.|.+.+..
T Consensus 103 ~m~~~sda~Ivlp--Gg~GTL~E~~~al~~~kpV~~l~~~~~~~gfi~~~~~~~i~~~~~~~e~~~~l~~~~~~ 174 (176)
T 2iz6_A 103 INALSSNVLVAVG--MGPGTAAEVALALKAKKPVVLLGTQPEAEKFFTSLDAGLVHVAADVAGAIAAVKQLLAK 174 (176)
T ss_dssp CCGGGCSEEEEES--CCHHHHHHHHHHHHTTCCEEEESCCHHHHHHHHHHCTTTEEEESSHHHHHHHHHHHHHC
T ss_pred HHHHhCCEEEEec--CCccHHHHHHHHHHhCCcEEEEcCcccccccCChhhcCeEEEcCCHHHHHHHHHHHHHh
Confidence 4555677776532 24553 57889999999999887 32 2233322 2235556999999999887754
No 118
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=55.33 E-value=24 Score=27.67 Aligned_cols=67 Identities=13% Similarity=0.169 Sum_probs=39.5
Q ss_pred HHHhhcCEEEecCCC--CcchhHHHHHHHcCCeEEe-cCC--Cc--ccccccCCC---EEE--eCCHHHHHHHHHHHHhC
Q 016975 209 LIFHDYKVFLNPSTT--DVVCTTTAEALAMGKIVVC-ANH--PS--NDFFKQFPN---CRT--YDDRNGFVEATLKALAE 276 (379)
Q Consensus 209 ~~~~~~dv~v~ps~~--E~~~~~~~EAma~G~PVI~-t~~--g~--~e~i~~~~~---g~~--~~~~~~l~~~i~~~l~~ 276 (379)
+.++.||++|.--.. .|.+.-+-=|.+.|+||++ +.. +. .-.+....+ -.+ +.+ +++.+.|.+.++.
T Consensus 64 ~~i~~aD~vvA~l~~~d~Gt~~EiG~A~algkPV~~l~~~~~~~~ls~mi~G~~~~~~~~~~~Y~~-~el~~il~~f~~~ 142 (152)
T 4fyk_A 64 NWLQQADVVVAEVTQPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIRGAADGSRFQVWDYAE-GEVETMLDRYFEA 142 (152)
T ss_dssp HHHHHCSEEEEECSSCCHHHHHHHHHHHHTTCCEEEEECGGGSCCCCHHHHHHCCSSSEEEEECCT-TCHHHHHHHHHC-
T ss_pred HHHHHCCEEEEeCCCCCCCHHHHHHHHHHcCCeEEEEEeCCccchhHHHHcCCCCCCeEEEEEecH-HHHHHHHHHHHHh
Confidence 889999999864322 3333445557899999999 332 11 112222222 222 336 8888888877664
No 119
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=55.31 E-value=68 Score=28.52 Aligned_cols=72 Identities=21% Similarity=0.286 Sum_probs=49.2
Q ss_pred cCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhh--cCEEEecCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 170 LAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 170 ~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~--~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
.++++++-+-+ .+.+..++.+++.+.....+ .+.++++.. .|+++..+....-.-.+.+|+..|++|++-..
T Consensus 25 ~~~~~l~av~d-~~~~~~~~~~~~~g~~~~~~---~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~~Gk~vl~EKP 98 (344)
T 3mz0_A 25 LSGAEIVAVTD-VNQEAAQKVVEQYQLNATVY---PNDDSLLADENVDAVLVTSWGPAHESSVLKAIKAQKYVFCEKP 98 (344)
T ss_dssp CSSEEEEEEEC-SSHHHHHHHHHHTTCCCEEE---SSHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSC
T ss_pred CCCcEEEEEEc-CCHHHHHHHHHHhCCCCeee---CCHHHHhcCCCCCEEEECCCchhHHHHHHHHHHCCCcEEEcCC
Confidence 46777664433 34566677777776433333 455577776 79999887766666667899999999998554
No 120
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=54.89 E-value=65 Score=24.18 Aligned_cols=105 Identities=10% Similarity=0.062 Sum_probs=61.2
Q ss_pred CCcEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHhh--cCEEEecCC-CCcchhHHHHHHH---cCCeEEec
Q 016975 171 AGLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPST-TDVVCTTTAEALA---MGKIVVCA 243 (379)
Q Consensus 171 ~~~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~--~dv~v~ps~-~E~~~~~~~EAma---~G~PVI~t 243 (379)
...+++|+.+.+. ...+....+..+..+.........-..+.. .|+++.-.. .+.-|+.+++.+. ..+|||..
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~l 85 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERVVI 85 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEEEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEEEE
Confidence 3567888877665 455666666666665543332222244433 377775432 2445666666653 36777665
Q ss_pred CC-Ccc----cccccC-CCEEEeC--CHHHHHHHHHHHHh
Q 016975 244 NH-PSN----DFFKQF-PNCRTYD--DRNGFVEATLKALA 275 (379)
Q Consensus 244 ~~-g~~----e~i~~~-~~g~~~~--~~~~l~~~i~~~l~ 275 (379)
.. ... +.+..+ ..+++.. +.+++..+|..++.
T Consensus 86 s~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~ 125 (154)
T 2rjn_A 86 SGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQ 125 (154)
T ss_dssp ECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHH
Confidence 44 332 233344 5677766 99999999988765
No 121
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=54.70 E-value=58 Score=23.57 Aligned_cols=104 Identities=7% Similarity=-0.069 Sum_probs=58.6
Q ss_pred cEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHhh--cCEEEecCC-CCcchhHHHHHHHc-----CCeEEec
Q 016975 173 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPST-TDVVCTTTAEALAM-----GKIVVCA 243 (379)
Q Consensus 173 ~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~--~dv~v~ps~-~E~~~~~~~EAma~-----G~PVI~t 243 (379)
.+++|+.+.+. ...+....+ .+.++.........-+.+.. .|+++.-.. .+.-|+.+++.+.. ++|||..
T Consensus 5 ~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~ 83 (133)
T 3nhm_A 5 PKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFV 83 (133)
T ss_dssp CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEE
Confidence 46777776554 334444444 44454433322211133333 377765433 35557777777654 6777654
Q ss_pred CC-Cc---ccccccCCCEEEeC--CHHHHHHHHHHHHhCC
Q 016975 244 NH-PS---NDFFKQFPNCRTYD--DRNGFVEATLKALAEE 277 (379)
Q Consensus 244 ~~-g~---~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~ 277 (379)
.. .. .+.+..+..+++.. +++++.++|..++...
T Consensus 84 s~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~ 123 (133)
T 3nhm_A 84 SGYAPRTEGPADQPVPDAYLVKPVKPPVLIAQLHALLARA 123 (133)
T ss_dssp ESCCC-----TTSCCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred eCCCcHhHHHHhhcCCceEEeccCCHHHHHHHHHHHHhhh
Confidence 43 32 22344555667766 9999999999988753
No 122
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=54.59 E-value=35 Score=26.91 Aligned_cols=66 Identities=11% Similarity=0.076 Sum_probs=43.1
Q ss_pred cccCHH--HHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHh-cCCeeEEecCCC-CHHHHHhhcCEEEec
Q 016975 152 WSKGYK--ELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEK-LKIVVRVYPGRD-HADLIFHDYKVFLNP 220 (379)
Q Consensus 152 ~~Kg~~--~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~-~~l~v~~~g~~~-~~~~~~~~~dv~v~p 220 (379)
..|+.+ ..++++... ...+.-+++-||++-...++ .+++ +|..|.+.|.-. .++++.+.||-|+.-
T Consensus 90 ~k~~~Dv~laiD~~~~a--~~~d~~vLvSgD~DF~plv~-~lr~~~G~~V~v~g~~~~~s~~L~~~ad~fi~l 159 (165)
T 2qip_A 90 AKGDWDVGITLDAIEIA--PDVDRVILVSGDGDFSLLVE-RIQQRYNKKVTVYGVPRLTSQTLIDCADNFVAI 159 (165)
T ss_dssp CSCCCHHHHHHHHHHHG--GGCSEEEEECCCGGGHHHHH-HHHHHHCCEEEEEECGGGSCHHHHHHSSEEEEC
T ss_pred cCCCccHHHHHHHHHhh--ccCCEEEEEECChhHHHHHH-HHHHHcCcEEEEEeCCCcChHHHHHhCCEEEec
Confidence 456666 456777653 34566677777775544444 4555 598998887643 234899999988754
No 123
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=54.54 E-value=58 Score=23.50 Aligned_cols=107 Identities=7% Similarity=0.003 Sum_probs=60.3
Q ss_pred CcEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHh---hcCEEEecCC-CC-cchhHHHHHHH---cCCeEEe
Q 016975 172 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH---DYKVFLNPST-TD-VVCTTTAEALA---MGKIVVC 242 (379)
Q Consensus 172 ~~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~---~~dv~v~ps~-~E-~~~~~~~EAma---~G~PVI~ 242 (379)
..+++|+.+.+. ...+.......+.++.........-..+. ..|+++.-.. .+ .-|+.+++.+. ..+|||.
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii~ 84 (132)
T 2rdm_A 5 AVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVY 84 (132)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEE
T ss_pred CceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 467888876655 45566666666666543322211113443 3577775433 23 45666666654 3577665
Q ss_pred cCC-CcccccccC-C-CEEEeC--CHHHHHHHHHHHHhCCC
Q 016975 243 ANH-PSNDFFKQF-P-NCRTYD--DRNGFVEATLKALAEEP 278 (379)
Q Consensus 243 t~~-g~~e~i~~~-~-~g~~~~--~~~~l~~~i~~~l~~~~ 278 (379)
... ...+..... . .+++.. +.+++..+|.+++....
T Consensus 85 ~s~~~~~~~~~~~~~~~~~l~kP~~~~~l~~~i~~~~~~~~ 125 (132)
T 2rdm_A 85 ISGHAALEWASNGVPDSIILEKPFTSAQLITAVSQLLNARE 125 (132)
T ss_dssp EESSCCTTHHHHSCTTCEEEESSCCHHHHHHHHHHHHHTTC
T ss_pred EeCCccHHHHHhhcCCcceEeCCCCHHHHHHHHHHHHhcCC
Confidence 433 332222111 1 246655 99999999999887644
No 124
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=54.34 E-value=79 Score=27.91 Aligned_cols=125 Identities=10% Similarity=0.068 Sum_probs=70.3
Q ss_pred cceEEEcC--hh-hhhhhh-ccceeecccCCCCccCccccHH----HhhcCCCCCcceEEEEEecccccCHHHHHHHHHH
Q 016975 94 CHKVIRLS--AA-TQEYAN-SIICNVHGVNPKFLEIGKKKKE----QQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDD 165 (379)
Q Consensus 94 ~d~vi~~S--~~-~~~~~~-~~i~~i~gvd~~~~~~~~~~~~----~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~ 165 (379)
+|.++.=. +. ...+.+ ..+.+|||-|.+...|...... ....+. -....|.|+|-+....=..-++.++.
T Consensus 97 ~D~iviR~~~~~~~~~lA~~~~vPVINag~g~~~HPtQ~LaDl~Ti~e~~g~-l~glkva~vGD~~~~rva~Sl~~~~~- 174 (306)
T 4ekn_B 97 ADIIVLRHPSEGAARLASEYSQVPIINAGDGSNQHPTQTLLDLYTIMREIGR-IDGIKIAFVGDLKYGRTVHSLVYALS- 174 (306)
T ss_dssp CSEEEEECSSTTHHHHHHHHCSSCEEESCSSSSCCHHHHHHHHHHHHHHHSC-STTCEEEEESCTTTCHHHHHHHHHHH-
T ss_pred CcEEEEEcCChHHHHHHHHhCCCCEEeCCCCCCcCcHHHHHHHHHHHHHhCC-cCCCEEEEEcCCCCCcHHHHHHHHHH-
Confidence 47766554 22 233332 4678889987666666443222 112222 23568999997643322233444443
Q ss_pred hHhhcCCcEEEEEcCCcC--hHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCCC-Ccc
Q 016975 166 HQKELAGLEVDLYGNGED--FNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTT-DVV 226 (379)
Q Consensus 166 l~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~~-E~~ 226 (379)
..+++++.+++.... .+.+.+.+++.|..+.+. .+.++.+..+|++...... |.+
T Consensus 175 ---~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~---~d~~eav~~aDvvy~~~~q~er~ 232 (306)
T 4ekn_B 175 ---LFENVEMYFVSPKELRLPKDIIEDLKAKNIKFYEK---ESLDDLDDDIDVLYVTRIQKERF 232 (306)
T ss_dssp ---TSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEEE---SCGGGCCTTCSEEEECCCCGGGC
T ss_pred ---hcCCCEEEEECCcccccCHHHHHHHHHcCCEEEEE---cCHHHHhcCCCEEEeCCcccccC
Confidence 345789999985322 345555566666665544 3445678899998876543 444
No 125
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=53.65 E-value=68 Score=24.06 Aligned_cols=105 Identities=11% Similarity=0.064 Sum_probs=60.0
Q ss_pred CcEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHhh--cCEEEecCC-CCcchhHHHHHHH---cCCeEEecC
Q 016975 172 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPST-TDVVCTTTAEALA---MGKIVVCAN 244 (379)
Q Consensus 172 ~~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~--~dv~v~ps~-~E~~~~~~~EAma---~G~PVI~t~ 244 (379)
..+++|+.+.+. ...+....++.+..+.........-+.+.. .|+++.-.. .+.-|+.+++.+. ..+|||...
T Consensus 14 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s 93 (153)
T 3hv2_A 14 RPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASREVDLVISAAHLPQMDGPTLLARIHQQYPSTTRILLT 93 (153)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEEC
T ss_pred CceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcCCCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEEEEE
Confidence 356777766554 445566666655554433322221133333 377765433 3445666666654 467777654
Q ss_pred C-Ccc----cccccC-CCEEEeC--CHHHHHHHHHHHHhC
Q 016975 245 H-PSN----DFFKQF-PNCRTYD--DRNGFVEATLKALAE 276 (379)
Q Consensus 245 ~-g~~----e~i~~~-~~g~~~~--~~~~l~~~i~~~l~~ 276 (379)
. ... +.+..+ ..+++.. +.++|..+|..++..
T Consensus 94 ~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~ 133 (153)
T 3hv2_A 94 GDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEH 133 (153)
T ss_dssp CCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 4 332 234455 5677766 999999999988764
No 126
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=53.63 E-value=59 Score=23.33 Aligned_cols=102 Identities=13% Similarity=0.067 Sum_probs=60.2
Q ss_pred CcEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHH---HHHhh--cCEEEecCC-CCcchhHHHHHHH---cCCeEE
Q 016975 172 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHAD---LIFHD--YKVFLNPST-TDVVCTTTAEALA---MGKIVV 241 (379)
Q Consensus 172 ~~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~---~~~~~--~dv~v~ps~-~E~~~~~~~EAma---~G~PVI 241 (379)
+.+++++.+.+. ...+.......+..+.... ..+ ..+.. .|+++.=.. .+.-|+.+++.+. ...|||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~---~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii 79 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQ---SAEAFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDLKINIPSI 79 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEES---CHHHHHHHGGGCCSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeC---CHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 456777777665 4556666666665554332 233 33333 366664322 2334566666653 356776
Q ss_pred ec-CCCc----ccccccCCCEEEeC--CHHHHHHHHHHHHhC
Q 016975 242 CA-NHPS----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 276 (379)
Q Consensus 242 ~t-~~g~----~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~ 276 (379)
.. .... .+.+..+..+++.. +.+++.+++..++..
T Consensus 80 ~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (126)
T 1dbw_A 80 VITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEH 121 (126)
T ss_dssp EEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTT
T ss_pred EEECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHh
Confidence 54 3333 23455667787777 999999999988754
No 127
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=53.38 E-value=1.2e+02 Score=26.77 Aligned_cols=150 Identities=9% Similarity=-0.005 Sum_probs=66.4
Q ss_pred hcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCcccccccCCCEEEeCCHHHHHHHHHHHHhCCCCCCcHHHH--hcCC
Q 016975 213 DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEEPALPTEAQR--HQLS 290 (379)
Q Consensus 213 ~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~~~~~~~~~~~~--~~~s 290 (379)
..|-+|+...... .-.+-++...|+|||..+..... .....+..++.+....+...++...-.++.--.. ...+
T Consensus 126 ~vdGiI~~~~~~~-~~~~~~l~~~~iPvV~i~~~~~~---~~~~~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~ 201 (355)
T 3e3m_A 126 RPEAMVLSYDGHT-EQTIRLLQRASIPIVEIWEKPAH---PIGHTVGFSNERAAYDMTNALLARGFRKIVFLGEKDDDWT 201 (355)
T ss_dssp CCSEEEEECSCCC-HHHHHHHHHCCSCEEEESSCCSS---CSSEEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCTTS
T ss_pred CCCEEEEeCCCCC-HHHHHHHHhCCCCEEEECCccCC---CCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEccCcccCh
Confidence 3455554332211 12234455789999987542111 1112344456777777777777754432221100 0111
Q ss_pred -HHHHHHHHHHHHhcccccccCCCCCCCccccccchhHHHhHHHHHHHHHHHhcCCcccceeecccCCCCCchHHHHHHh
Q 016975 291 -WESATERFLQVAELDQAVVKKPSKSPSKHFASTSLNLKKNMEEASAYVHFLASGFETSRRAFGAIPGSLHPDEELCKEL 369 (379)
Q Consensus 291 -w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 369 (379)
-..-.+-|.+.++.. ..+. ........... ..+.+...+..++...+....+|+.....-.-..+.+++.
T Consensus 202 ~~~~R~~Gf~~al~~~----g~~~---~~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~ai~~~nD~~A~g~~~al~~~ 272 (355)
T 3e3m_A 202 RGAARRAGFKRAMREA----GLNP---DQEIRLGAPPL--SIEDGVAAAELILQEYPDTDCIFCVSDMPAFGLLSRLKSI 272 (355)
T ss_dssp HHHHHHHHHHHHHHHT----TSCS---CCEEEESCSSC--CHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHC----CcCC---CccEEEecCCC--CHHHHHHHHHHHHcCCCCCcEEEECChHHHHHHHHHHHHc
Confidence 112222333333321 1000 00000000000 1234455555555555545667765433333456788999
Q ss_pred CCCCCC
Q 016975 370 GLVTPM 375 (379)
Q Consensus 370 ~~~~~~ 375 (379)
|+..|+
T Consensus 273 G~~vP~ 278 (355)
T 3e3m_A 273 GVAVPE 278 (355)
T ss_dssp TCCTTT
T ss_pred CCCCCC
Confidence 998774
No 128
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=53.31 E-value=67 Score=23.87 Aligned_cols=106 Identities=9% Similarity=-0.026 Sum_probs=59.4
Q ss_pred CCcEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHhh--cCEEEecCC-CCcchhHHHHHHH-------cCCe
Q 016975 171 AGLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPST-TDVVCTTTAEALA-------MGKI 239 (379)
Q Consensus 171 ~~~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~--~dv~v~ps~-~E~~~~~~~EAma-------~G~P 239 (379)
...+++|+.+.+. ...+....++.+..+.........-+.+.. .|+++.=.. -+.-|+.+++.+. ...|
T Consensus 13 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~~p 92 (143)
T 3m6m_D 13 RSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEEDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTP 92 (143)
T ss_dssp --CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCCCC
T ss_pred ccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhchhccCCCCe
Confidence 3467888887665 455666666666655443321111134433 477775332 2445677777764 1256
Q ss_pred EEecCC-Ccc----cccccCCCEEEeC--CHHHHHHHHHHHHhC
Q 016975 240 VVCANH-PSN----DFFKQFPNCRTYD--DRNGFVEATLKALAE 276 (379)
Q Consensus 240 VI~t~~-g~~----e~i~~~~~g~~~~--~~~~l~~~i~~~l~~ 276 (379)
||.... ... +.+..+-.+++.. +.+++.+++..+...
T Consensus 93 ii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 93 VVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp EEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC--
T ss_pred EEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHh
Confidence 665433 332 2345566777777 999999999987643
No 129
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=52.82 E-value=11 Score=32.99 Aligned_cols=93 Identities=11% Similarity=0.078 Sum_probs=55.2
Q ss_pred cccCHHHHHHHHHHhHhhcCCcEEEEEcCCcC-hHHHHHHHHhcCC---eeEEecCC-CCHH-HHHhhcCEEEecCCCCc
Q 016975 152 WSKGYKELLELLDDHQKELAGLEVDLYGNGED-FNQIQEAAEKLKI---VVRVYPGR-DHAD-LIFHDYKVFLNPSTTDV 225 (379)
Q Consensus 152 ~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~l---~v~~~g~~-~~~~-~~~~~~dv~v~ps~~E~ 225 (379)
-.|=+..|..|+..+..-...-+++++|..+. ...+++.++..|. +-+++|+. .+.. .-++.=|+++.......
T Consensus 51 L~kT~~~L~~A~~~i~~i~~~~~ILfVgTk~~aq~~V~k~A~~~g~~yv~~RWlgG~LTN~~t~~f~~PdlliV~Dp~~e 130 (295)
T 2zkq_b 51 LKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRAD 130 (295)
T ss_dssp HHHHHHHHHHHHHHHHHSSCGGGEEEEECSHHHHHHHHHHHHHHCCEEEESSCCCC-CCCTTCSSCCCCSEEEESCTTTT
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHhCCceecceEecccccCcccccccCCCeEEEeCCCcc
Confidence 34555666666665552112345888887765 3446666666664 33566553 3332 33344577776644322
Q ss_pred chhHHHHHHHcCCeEEecCC
Q 016975 226 VCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 226 ~~~~~~EAma~G~PVI~t~~ 245 (379)
-.++.||...|+|||+--.
T Consensus 131 -~~AI~EA~~lgIPvIalvD 149 (295)
T 2zkq_b 131 -HQPLTEASYVNLPTIALCN 149 (295)
T ss_dssp -HHHHHHHHHHTCCEEEEEC
T ss_pred -hhHHHHHHHhCCCEEEEec
Confidence 4679999999999998644
No 130
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=52.63 E-value=66 Score=23.62 Aligned_cols=106 Identities=8% Similarity=-0.102 Sum_probs=63.3
Q ss_pred CcEEEEEcCCcC-hHHHHHHHHhcCC--eeEEecCCCCHHHHHhh-------cCEEEecCC-CCcchhHHHHHHHc----
Q 016975 172 GLEVDLYGNGED-FNQIQEAAEKLKI--VVRVYPGRDHADLIFHD-------YKVFLNPST-TDVVCTTTAEALAM---- 236 (379)
Q Consensus 172 ~~~l~i~G~g~~-~~~l~~~~~~~~l--~v~~~g~~~~~~~~~~~-------~dv~v~ps~-~E~~~~~~~EAma~---- 236 (379)
..+++|+.+.+. ...+....+..+. .+.........-+.+.. .|+++.=.. .+.-|+.+++.+..
T Consensus 9 ~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~ 88 (146)
T 3ilh_A 9 IDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQP 88 (146)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHCGG
T ss_pred cceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHhhhh
Confidence 467788877655 4556666676665 33333322222245544 588776433 35567777776654
Q ss_pred ---CCeEEecCC-Ccc----cccccC-CCEEEeC--CHHHHHHHHHHHHhCC
Q 016975 237 ---GKIVVCANH-PSN----DFFKQF-PNCRTYD--DRNGFVEATLKALAEE 277 (379)
Q Consensus 237 ---G~PVI~t~~-g~~----e~i~~~-~~g~~~~--~~~~l~~~i~~~l~~~ 277 (379)
..|||.... ... +.+..+ ..+++.. +.++|.++|.+.....
T Consensus 89 ~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~~ 140 (146)
T 3ilh_A 89 MKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNEG 140 (146)
T ss_dssp GTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC-
T ss_pred ccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHhc
Confidence 667665444 332 234444 6677777 9999999999987754
No 131
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=52.36 E-value=1.1e+02 Score=25.96 Aligned_cols=43 Identities=14% Similarity=-0.014 Sum_probs=26.5
Q ss_pred HHHHHHHHHhc-CCc-ccceeecccCCCCCchHHHHHHhCCCCCC
Q 016975 333 EASAYVHFLAS-GFE-TSRRAFGAIPGSLHPDEELCKELGLVTPM 375 (379)
Q Consensus 333 ~~l~~~~~~~~-~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 375 (379)
.+.+.+..++. ..+ ....+|+.....-.-..+.+++.|+..|+
T Consensus 172 ~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~al~~~G~~vP~ 216 (287)
T 3bbl_A 172 VGRAMTLHLLDLSPERRPTAIMTLNDTMAIGAMAAARERGLTIGT 216 (287)
T ss_dssp HHHHHHHHHHTSCTTTSCSEEEESSHHHHHHHHHHHHHTTCCBTT
T ss_pred HHHHHHHHHHhhCCCCCCcEEEECCcHHHHHHHHHHHHcCCCCCC
Confidence 45556666666 544 45667765433333456788899997663
No 132
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=51.95 E-value=67 Score=28.34 Aligned_cols=69 Identities=14% Similarity=0.055 Sum_probs=48.1
Q ss_pred cCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHh--hcCEEEecCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 170 LAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 170 ~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~--~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
.++++++-+-+ .+.+..++.+++.+.. ..+.++++. ..|+++..+....-.-.+.+|+..|++|++-..
T Consensus 25 ~~~~~l~av~d-~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP 95 (331)
T 4hkt_A 25 NADARLVAVAD-AFPAAAEAIAGAYGCE------VRTIDAIEAAADIDAVVICTPTDTHADLIERFARAGKAIFCEKP 95 (331)
T ss_dssp CTTEEEEEEEC-SSHHHHHHHHHHTTCE------ECCHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSC
T ss_pred CCCcEEEEEEC-CCHHHHHHHHHHhCCC------cCCHHHHhcCCCCCEEEEeCCchhHHHHHHHHHHcCCcEEEecC
Confidence 46777664433 3445666667666543 356667887 789999887766656667899999999998654
No 133
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=51.95 E-value=1.1e+02 Score=26.02 Aligned_cols=65 Identities=12% Similarity=-0.033 Sum_probs=36.1
Q ss_pred hcCEEEe-cCCCCcchhHHHHHHHcCCeEEecCCCcccccc-cCCCEEEeCCHHHHHHHHHHHHhCC
Q 016975 213 DYKVFLN-PSTTDVVCTTTAEALAMGKIVVCANHPSNDFFK-QFPNCRTYDDRNGFVEATLKALAEE 277 (379)
Q Consensus 213 ~~dv~v~-ps~~E~~~~~~~EAma~G~PVI~t~~g~~e~i~-~~~~g~~~~~~~~l~~~i~~~l~~~ 277 (379)
..|.+|+ |...+...-.+-++...|+|||+.+......-. .....+..++.+....+...+++.-
T Consensus 61 ~vdgiii~~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g 127 (297)
T 3rot_A 61 YPSGIATTIPSDTAFSKSLQRANKLNIPVIAVDTRPKDKTKNPYLVFLGSDNLLAGKKLGEKALELT 127 (297)
T ss_dssp CCSEEEECCCCSSTTHHHHHHHHHHTCCEEEESCCCSCTTTSCCSCEEECCHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEeCCCHHHHHHHHHHHHHCCCCEEEEcCCCccccccCcceEEccChHHHHHHHHHHHHHhc
Confidence 4565554 554555555566788899999998874322111 1122334445555555555555543
No 134
>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}
Probab=51.95 E-value=38 Score=30.51 Aligned_cols=97 Identities=15% Similarity=0.130 Sum_probs=59.1
Q ss_pred cceEEEEEecccccCHHHHHHHHHHhHhh---cCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhh--cC
Q 016975 141 AKGAYYIGKMVWSKGYKELLELLDDHQKE---LAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YK 215 (379)
Q Consensus 141 ~~~il~vgrl~~~Kg~~~li~a~~~l~~~---~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~--~d 215 (379)
+..|..||--...+.+ ++++..+..- ..+.+++-+-+ .+.+..++.+++.+.. .++ .+.++++.. .|
T Consensus 6 klrvgiIG~G~ig~~h---~~~~~~~~~~~~~~~~~~l~av~d-~~~~~a~~~a~~~g~~-~~~---~d~~~ll~~~~iD 77 (390)
T 4h3v_A 6 NLGIGLIGYAFMGAAH---SQAWRSAPRFFDLPLHPDLNVLCG-RDAEAVRAAAGKLGWS-TTE---TDWRTLLERDDVQ 77 (390)
T ss_dssp EEEEEEECHHHHHHHH---HHHHHHHHHHSCCSSEEEEEEEEC-SSHHHHHHHHHHHTCS-EEE---SCHHHHTTCTTCS
T ss_pred cCcEEEEcCCHHHHHH---HHHHHhCccccccccCceEEEEEc-CCHHHHHHHHHHcCCC-ccc---CCHHHHhcCCCCC
Confidence 3467777742222222 4444444321 12234544443 4556777778877753 222 345577765 58
Q ss_pred EEEecCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 216 VFLNPSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 216 v~v~ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
+++..+....-.-.+.+|+..|++|+|=..
T Consensus 78 aV~I~tP~~~H~~~~~~al~aGkhVl~EKP 107 (390)
T 4h3v_A 78 LVDVCTPGDSHAEIAIAALEAGKHVLCEKP 107 (390)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEEESS
T ss_pred EEEEeCChHHHHHHHHHHHHcCCCceeecC
Confidence 888887776666678999999999999776
No 135
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=51.84 E-value=67 Score=23.43 Aligned_cols=106 Identities=12% Similarity=-0.033 Sum_probs=61.8
Q ss_pred CCcEEEEEcCCcC-hHHHHHHHHhcCCeeEE-ecCCCCHHHHHh--hcCEEEecCCC--CcchhHHHHHHH--cCCeEEe
Q 016975 171 AGLEVDLYGNGED-FNQIQEAAEKLKIVVRV-YPGRDHADLIFH--DYKVFLNPSTT--DVVCTTTAEALA--MGKIVVC 242 (379)
Q Consensus 171 ~~~~l~i~G~g~~-~~~l~~~~~~~~l~v~~-~g~~~~~~~~~~--~~dv~v~ps~~--E~~~~~~~EAma--~G~PVI~ 242 (379)
...+++|+.+.+. ...+....++.+..+.. .....+.-..+. ..|+++.-... +.-|..+++.+. .++|||.
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~~~~~ii~ 87 (140)
T 3cg0_A 8 DLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAAGCNLPIIF 87 (140)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHHHSCCCEEE
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHhCCCCCEEE
Confidence 3567888876555 45566666666666542 332222223333 34777764332 234555665554 5777775
Q ss_pred cCC-Ccc----cccccCCCEEEeC--CHHHHHHHHHHHHhC
Q 016975 243 ANH-PSN----DFFKQFPNCRTYD--DRNGFVEATLKALAE 276 (379)
Q Consensus 243 t~~-g~~----e~i~~~~~g~~~~--~~~~l~~~i~~~l~~ 276 (379)
-.. ... +.+..+..+++.. +.+++..+|..++..
T Consensus 88 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 128 (140)
T 3cg0_A 88 ITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHK 128 (140)
T ss_dssp EECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 433 332 3445566676665 999999999988763
No 136
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=51.84 E-value=90 Score=26.51 Aligned_cols=43 Identities=16% Similarity=0.013 Sum_probs=24.6
Q ss_pred HHHHHHHHHhcCCcccceeecccCCCCCchHHHHHHhCCCCCC
Q 016975 333 EASAYVHFLASGFETSRRAFGAIPGSLHPDEELCKELGLVTPM 375 (379)
Q Consensus 333 ~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 375 (379)
.+...+..++...+....+|+.......-..+.+++.|+..|+
T Consensus 175 ~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~G~~vP~ 217 (290)
T 2rgy_A 175 GGYAATCQLLESKAPFTGLFCANDTMAVSALARFQQLGISVPG 217 (290)
T ss_dssp HHHHHHHHHHHHTCCCSEEEESSHHHHHHHHHHHHHTTCCTTT
T ss_pred HHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHHcCCCCCC
Confidence 3444445555444445566654333333456788899997773
No 137
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=51.64 E-value=69 Score=23.56 Aligned_cols=104 Identities=9% Similarity=0.016 Sum_probs=61.9
Q ss_pred CcEEEEEcCCcC-hHHHHHHHHhcCC--eeEEecCCCCHHHHHh------------hcCEEEecCC-CCcchhHHHHHHH
Q 016975 172 GLEVDLYGNGED-FNQIQEAAEKLKI--VVRVYPGRDHADLIFH------------DYKVFLNPST-TDVVCTTTAEALA 235 (379)
Q Consensus 172 ~~~l~i~G~g~~-~~~l~~~~~~~~l--~v~~~g~~~~~~~~~~------------~~dv~v~ps~-~E~~~~~~~EAma 235 (379)
..+++|+.+.+. ...+....++.+. .+.......+.-+.+. ..|+++.=.. .+.-|+.+++.+.
T Consensus 6 ~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~ 85 (149)
T 1k66_A 6 TQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEIK 85 (149)
T ss_dssp TSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHHHT
T ss_pred CccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHHHH
Confidence 456777776554 4556677777665 4443333222224444 3577775433 2445677777775
Q ss_pred -----cCCeEEecCC-Cc----ccccccCCCEEEeC--CHHHHHHHHHHHHh
Q 016975 236 -----MGKIVVCANH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALA 275 (379)
Q Consensus 236 -----~G~PVI~t~~-g~----~e~i~~~~~g~~~~--~~~~l~~~i~~~l~ 275 (379)
..+|||.... .. .+.+..+..+++.. +.+++.++|..++.
T Consensus 86 ~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 137 (149)
T 1k66_A 86 QDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIK 137 (149)
T ss_dssp TSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred hCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 3566665433 33 23445566777766 99999999888765
No 138
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=51.36 E-value=64 Score=23.10 Aligned_cols=105 Identities=9% Similarity=-0.053 Sum_probs=61.3
Q ss_pred CcEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHhh--cCEEEecC-CCCcchhHHHHHHH-----cCCeEEe
Q 016975 172 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPS-TTDVVCTTTAEALA-----MGKIVVC 242 (379)
Q Consensus 172 ~~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~--~dv~v~ps-~~E~~~~~~~EAma-----~G~PVI~ 242 (379)
..+++|+.+.+. ...+....++.+.++.........-+.+.. .|+++.=. ..+.-|+.+++.+. ..+|||.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ 82 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVA 82 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEE
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEE
Confidence 356777776554 556777777777655544322222244433 37766543 33556777777764 3467776
Q ss_pred cCC-Cc---ccccccCCCEEEeC--CHHHHHHHHHHHHhC
Q 016975 243 ANH-PS---NDFFKQFPNCRTYD--DRNGFVEATLKALAE 276 (379)
Q Consensus 243 t~~-g~---~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~ 276 (379)
... .. .+.+..+..+++.. ++++|.+++......
T Consensus 83 ~s~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 122 (127)
T 3i42_A 83 VSGFAKNDLGKEACELFDFYLEKPIDIASLEPILQSIEGH 122 (127)
T ss_dssp EECC-CTTCCHHHHHHCSEEEESSCCHHHHHHHHHHHC--
T ss_pred EECCcchhHHHHHHHhhHHheeCCCCHHHHHHHHHHhhcc
Confidence 443 22 22344455666766 999999999987654
No 139
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=51.27 E-value=35 Score=25.06 Aligned_cols=105 Identities=10% Similarity=0.011 Sum_probs=60.1
Q ss_pred CcEEEEEcCCcC-hHHHHHHHHhcC-CeeEEecCCCCHHHHHh--hcCEEEecC-CCCcchhHHHHHHHc---CCeEEec
Q 016975 172 GLEVDLYGNGED-FNQIQEAAEKLK-IVVRVYPGRDHADLIFH--DYKVFLNPS-TTDVVCTTTAEALAM---GKIVVCA 243 (379)
Q Consensus 172 ~~~l~i~G~g~~-~~~l~~~~~~~~-l~v~~~g~~~~~~~~~~--~~dv~v~ps-~~E~~~~~~~EAma~---G~PVI~t 243 (379)
..+++|+.+.+. ...+....++.+ .++.........-+.+. ..|+++.=. ..+.-|+.+++.+.. .+|||..
T Consensus 14 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 93 (135)
T 3snk_A 14 RKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPADTRPGIVILDLGGGDLLGKPGIVEARALWATVPLIAV 93 (135)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTTCCCSEEEEEEETTGGGGSTTHHHHHGGGTTCCEEEE
T ss_pred CcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhccCCCEEEEeCCCCCchHHHHHHHHHhhCCCCcEEEE
Confidence 457888877665 455677777777 66554432222222222 247766532 223445555555443 5677654
Q ss_pred CC-Ccc----cccccCCCEEEeC--CHHHHHHHHHHHHhC
Q 016975 244 NH-PSN----DFFKQFPNCRTYD--DRNGFVEATLKALAE 276 (379)
Q Consensus 244 ~~-g~~----e~i~~~~~g~~~~--~~~~l~~~i~~~l~~ 276 (379)
.. ... +.+..+..+++.. +++++..+|..++..
T Consensus 94 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 94 SDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp ESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred eCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 33 332 2445666777777 999999999887653
No 140
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=50.84 E-value=1.1e+02 Score=26.41 Aligned_cols=62 Identities=15% Similarity=0.034 Sum_probs=34.6
Q ss_pred hhcCEEEecCC-CCcchhHHHHHHHcCCeEEecCCCcccccccCCC-EEEeCCHHHHHHHHHHHHh
Q 016975 212 HDYKVFLNPST-TDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPN-CRTYDDRNGFVEATLKALA 275 (379)
Q Consensus 212 ~~~dv~v~ps~-~E~~~~~~~EAma~G~PVI~t~~g~~e~i~~~~~-g~~~~~~~~l~~~i~~~l~ 275 (379)
+..|.+|..+. .+...-.+-++...|+|||+.+....+. .... .+..++.+....+...++.
T Consensus 58 ~~vdgiIi~~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~--~~~~~~V~~D~~~~g~~a~~~l~~ 121 (330)
T 3uug_A 58 KGVKVLVIASIDGTTLSDVLKQAGEQGIKVIAYDRLIRNS--GDVSYYATFDNFQVGVLQATSITD 121 (330)
T ss_dssp HTCSEEEECCSSGGGGHHHHHHHHHTTCEEEEESSCCCSC--TTCCEEEEECHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCchhHHHHHHHHHHCCCCEEEECCCCCCC--CceeEEEEeCHHHHHHHHHHHHHH
Confidence 34566665443 3344445667788999999988743220 1112 2344555555555555555
No 141
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=50.42 E-value=20 Score=30.55 Aligned_cols=92 Identities=11% Similarity=0.006 Sum_probs=54.7
Q ss_pred ccCHHHHHHHHHHhHhhcCCcEEEEEcCCcCh-HHHHHHHHhcCC----eeEEecCC-CCHH-HHHhhcCEEEecCCCCc
Q 016975 153 SKGYKELLELLDDHQKELAGLEVDLYGNGEDF-NQIQEAAEKLKI----VVRVYPGR-DHAD-LIFHDYKVFLNPSTTDV 225 (379)
Q Consensus 153 ~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~-~~l~~~~~~~~l----~v~~~g~~-~~~~-~~~~~~dv~v~ps~~E~ 225 (379)
.|=+..|..|+.-+..-...-+++++|..+.- ..+.+.++..|. +-+++|+. .+.. ..++.=|+++.....+
T Consensus 47 ~kT~~~L~~A~~~i~~i~~~~~iLfVgtk~~~~~~V~~~A~~~g~~yv~~~RWlgG~LTN~~t~~~~~PdlliV~Dp~~- 125 (241)
T 2xzm_B 47 EETWQKIKLAARVIAAVQHPEDVMVVCSRIYGQRAAIKFAGYTHCKSTSSSRWTPGTLTNYQTLKYEEPRVLIVTDPRS- 125 (241)
T ss_dssp HHHHHHHHHHHHHHHHCSSGGGEEEECCSHHHHHHHHHHHHHHTCBCCCCSSCCTTTTTCTTCTTCCCCSEEEESCTTT-
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHhCCEEeccccccCCcccCccccccCCCCEEEEECCCc-
Confidence 45555566666555442123457889987663 345555665554 22577553 3333 3344457777664332
Q ss_pred chhHHHHHHHcCCeEEecCC
Q 016975 226 VCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 226 ~~~~~~EAma~G~PVI~t~~ 245 (379)
=-.++.||...|+|||+--.
T Consensus 126 e~~ai~EA~~l~IPvIalvD 145 (241)
T 2xzm_B 126 DFQAIKEASYVNIPVIALCD 145 (241)
T ss_dssp THHHHHHHTTTTCCEEECCC
T ss_pred chHHHHHHHHhCCCEEEEec
Confidence 23579999999999998654
No 142
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=50.16 E-value=45 Score=23.28 Aligned_cols=102 Identities=12% Similarity=-0.007 Sum_probs=56.7
Q ss_pred EEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHhh--cCEEEecCC-CCcchhHHHHHHH-----cCCeEEecC
Q 016975 174 EVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPST-TDVVCTTTAEALA-----MGKIVVCAN 244 (379)
Q Consensus 174 ~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~--~dv~v~ps~-~E~~~~~~~EAma-----~G~PVI~t~ 244 (379)
+++++.+.+. ...+....+..+.++.......+....+.. .|+.+.-.. .+.-|..+++.+. .++|+|...
T Consensus 3 ~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~ 82 (119)
T 2j48_A 3 HILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFL 82 (119)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEe
Confidence 4666766554 455666666666665544322222233332 477665432 3445667777765 456766543
Q ss_pred C-Cc-ccccccCCCEEEeC--CHHHHHHHHHHHHh
Q 016975 245 H-PS-NDFFKQFPNCRTYD--DRNGFVEATLKALA 275 (379)
Q Consensus 245 ~-g~-~e~i~~~~~g~~~~--~~~~l~~~i~~~l~ 275 (379)
. +. .+.+..+..+++.. +.+++.+++..++.
T Consensus 83 ~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 117 (119)
T 2j48_A 83 GEPPVDPLLTAQASAILSKPLDPQLLLTTLQGLCP 117 (119)
T ss_dssp SSCCSSHHHHHHCSEECSSCSTTHHHHHHHHTTCC
T ss_pred CCCCchhhhhcCHHHhccCCCCHHHHHHHHHHHhc
Confidence 3 22 23444445566655 88899888877553
No 143
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=50.12 E-value=1.1e+02 Score=25.53 Aligned_cols=43 Identities=9% Similarity=-0.143 Sum_probs=26.5
Q ss_pred HHHHHHHHHhcCCcccceeecccCCCCCchHHHHHHhCCCCCC
Q 016975 333 EASAYVHFLASGFETSRRAFGAIPGSLHPDEELCKELGLVTPM 375 (379)
Q Consensus 333 ~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 375 (379)
.+...+..++...+....+|+..........+.+++.|+..|+
T Consensus 167 ~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~ 209 (275)
T 3d8u_A 167 LGAEGLAKLLLRDSSLNALVCSHEEIAIGALFECHRRVLKVPT 209 (275)
T ss_dssp HHHHHHHHHHTTCTTCCEEEESSHHHHHHHHHHHHHTTCCTTT
T ss_pred HHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCC
Confidence 4455556666655445667765443344456788899997773
No 144
>3kip_A 3-dehydroquinase, type II; lyase; 2.95A {Candida albicans}
Probab=49.66 E-value=21 Score=28.24 Aligned_cols=60 Identities=13% Similarity=0.138 Sum_probs=44.0
Q ss_pred EEEecCCCCcchhHHHHHH-HcCCeEEecCCC---ccc------ccccCCCEEEeC-CHHHHHHHHHHHHh
Q 016975 216 VFLNPSTTDVVCTTTAEAL-AMGKIVVCANHP---SND------FFKQFPNCRTYD-DRNGFVEATLKALA 275 (379)
Q Consensus 216 v~v~ps~~E~~~~~~~EAm-a~G~PVI~t~~g---~~e------~i~~~~~g~~~~-~~~~l~~~i~~~l~ 275 (379)
+.+||.-+--.+.++.+|+ +.++|+|=--.. ..| ++.+--.|.+.- -.+...-+|..+++
T Consensus 87 IIINpgAyTHtSvAlrDAL~~v~~P~VEVHiSNihaRE~FRh~S~~s~~a~GvI~G~G~~gY~lAl~~l~~ 157 (167)
T 3kip_A 87 VVINAGAYTHTSVGIRDALLGTAIPFIEVHITNVHQREPFRHQSYLSDKAVAVICGLGVYGYTAAIEYALN 157 (167)
T ss_dssp EEEECGGGGGTCHHHHHHHHHTTCCEEEEESSCGGGSCGGGGCCSSGGGSSEEEESSTTHHHHHHHHHHTT
T ss_pred EEEccccceeccHHHHHHHHhcCCCEEEEEcCCccccccchhcccccccceEEEEeCChhhHHHHHHHHHH
Confidence 7889988877889999997 678999865552 255 344445677777 77777777777655
No 145
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=49.07 E-value=1.3e+02 Score=25.85 Aligned_cols=59 Identities=17% Similarity=0.097 Sum_probs=33.5
Q ss_pred hcCEEEe-cCCCCcchhHHHHHHHcCCeEEecCCCcccccccCC-CEEEeCCHHHHHHHHHHHH
Q 016975 213 DYKVFLN-PSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFP-NCRTYDDRNGFVEATLKAL 274 (379)
Q Consensus 213 ~~dv~v~-ps~~E~~~~~~~EAma~G~PVI~t~~g~~e~i~~~~-~g~~~~~~~~l~~~i~~~l 274 (379)
..|.+|+ |...+...-.+-++...|+|||+.+....+ ... ..+..++.+....+...++
T Consensus 58 ~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~---~~~~~~V~~D~~~~g~~a~~~L~ 118 (313)
T 3m9w_A 58 GVDVLVIIPYNGQVLSNVVKEAKQEGIKVLAYDRMIND---ADIDFYISFDNEKVGELQAKALV 118 (313)
T ss_dssp TCSEEEEECSSTTSCHHHHHHHHTTTCEEEEESSCCTT---SCCSEEEEECHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCChhhhHHHHHHHHHCCCeEEEECCcCCC---CCceEEEecCHHHHHHHHHHHHH
Confidence 4565554 443344444556667789999998874322 111 2344445666666666666
No 146
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=49.02 E-value=73 Score=23.03 Aligned_cols=106 Identities=12% Similarity=0.001 Sum_probs=63.6
Q ss_pred cEEEEEcCCcC-hHHHHHHHHhcCCeeE-EecCCCCHHHHHh--hcCEEEecCC-CCcchhHHHHHHH---cCCeEEecC
Q 016975 173 LEVDLYGNGED-FNQIQEAAEKLKIVVR-VYPGRDHADLIFH--DYKVFLNPST-TDVVCTTTAEALA---MGKIVVCAN 244 (379)
Q Consensus 173 ~~l~i~G~g~~-~~~l~~~~~~~~l~v~-~~g~~~~~~~~~~--~~dv~v~ps~-~E~~~~~~~EAma---~G~PVI~t~ 244 (379)
++++|+.+.+. ...+....++.+..+. ........-..+. ..|+++.-.. .+.-|+.+++.+. ...|||...
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s 81 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVS 81 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEEEE
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhcCCCEEEEecCCCCCChHHHHHHHHhcCCCCeEEEEe
Confidence 46777776555 5556777777765543 3333333333333 3477765433 3455667776654 356666533
Q ss_pred C-Cc----ccccccCCCEEEeC--CHHHHHHHHHHHHhCCC
Q 016975 245 H-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAEEP 278 (379)
Q Consensus 245 ~-g~----~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~ 278 (379)
. .. .+.+..+..+++.. +.+++.++|..++....
T Consensus 82 ~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~ 122 (134)
T 3f6c_A 82 AKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 122 (134)
T ss_dssp CC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTCC
T ss_pred CCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCE
Confidence 3 22 33455666777776 99999999999887654
No 147
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=48.97 E-value=39 Score=26.83 Aligned_cols=89 Identities=13% Similarity=0.113 Sum_probs=55.0
Q ss_pred HHHHHHhcCCeeEEecCCCCHH--HHHhh----c-CEEEecCCCCcchhHHHHHH-HcCCeEEecCC---Ccccc-----
Q 016975 187 IQEAAEKLKIVVRVYPGRDHAD--LIFHD----Y-KVFLNPSTTDVVCTTTAEAL-AMGKIVVCANH---PSNDF----- 250 (379)
Q Consensus 187 l~~~~~~~~l~v~~~g~~~~~~--~~~~~----~-dv~v~ps~~E~~~~~~~EAm-a~G~PVI~t~~---g~~e~----- 250 (379)
+++.+.+++..+.++-.=..-+ +.++. + -+.|||.-+--.+.++.+|+ +.++|+|=-.. -.+|.
T Consensus 62 l~~~a~~~G~~l~~~QSN~EGeLId~Ih~A~~~~dgIIINPgAyTHtSvAlrDAL~~v~~P~VEVHiSNihaRE~FRhhS 141 (172)
T 3n8k_A 62 IEREAAELGLKAVVRQSDSEAQLLDWIHQAADAAEPVILNAGGLTHTSVALRDACAELSAPLIEVHISNVHAREEFRRHS 141 (172)
T ss_dssp HHHHHHHTTCEEEEEECSCHHHHHHHHHHHHHHTCCEEEECGGGGGTCHHHHHHHTTCCSCEEEEESSCTTSSCGGGGCC
T ss_pred HHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCcEEEECcchhhhhhHHHHHHHHhCCCCEEEEEcCCchhcccccccc
Confidence 4445555666666552211111 33333 3 58899988888889999998 56889986544 33563
Q ss_pred -cccCCCEEEeC-CHHHHHHHHHHHHh
Q 016975 251 -FKQFPNCRTYD-DRNGFVEATLKALA 275 (379)
Q Consensus 251 -i~~~~~g~~~~-~~~~l~~~i~~~l~ 275 (379)
+.+--.|.+.- =.+...-++..+++
T Consensus 142 ~is~~a~GvI~G~G~~gY~lAl~al~~ 168 (172)
T 3n8k_A 142 YLSPIATGVIVGLGIQGYLLALRYLAE 168 (172)
T ss_dssp SSGGGSSEEEESSTTHHHHHHHHHHHH
T ss_pred cccccceEEEEeCChHHHHHHHHHHHH
Confidence 34445677777 66677766666554
No 148
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=48.54 E-value=45 Score=24.50 Aligned_cols=103 Identities=8% Similarity=0.023 Sum_probs=61.9
Q ss_pred CcEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHh---h--cCEEEecCC-CC--cchhHHHHHHHc---CCe
Q 016975 172 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH---D--YKVFLNPST-TD--VVCTTTAEALAM---GKI 239 (379)
Q Consensus 172 ~~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~---~--~dv~v~ps~-~E--~~~~~~~EAma~---G~P 239 (379)
..+++|+.+.+. ...+....++.+.++.... +.++.+. . .|+++.-.. .+ .-|+.+++.+.. .+|
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~---~~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~ 82 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLSPLDVTIQCFA---SAESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVKRGFHLP 82 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTTSSSEEEEES---SHHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCC
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeC---CHHHHHHHHhccCCCEEEEeCcCCCCCccHHHHHHHHHhCCCCCC
Confidence 357788877655 4556666666666555333 3332222 2 366665433 24 456677766643 567
Q ss_pred EEecCC-Cc----ccccccCCCEEEeC--CHHHHHHHHHHHHhCC
Q 016975 240 VVCANH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAEE 277 (379)
Q Consensus 240 VI~t~~-g~----~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~ 277 (379)
||.... .. .+.+..+..+++.. +.+++.++|.+++...
T Consensus 83 ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 127 (136)
T 3kto_A 83 TIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGA 127 (136)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhcc
Confidence 665433 33 23456667777777 9999999999987653
No 149
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=48.46 E-value=69 Score=28.14 Aligned_cols=141 Identities=11% Similarity=0.004 Sum_probs=66.0
Q ss_pred hcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCcccccccCCCEEEeCCHHHHHHHHHHHHhCCCCCCcHHHHhcCCHH
Q 016975 213 DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEEPALPTEAQRHQLSWE 292 (379)
Q Consensus 213 ~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~sw~ 292 (379)
..|-+|+.+. +.++...|+|||..+....+ .....+..|+.+....+...+++....++.--.- .-+..
T Consensus 119 ~vdGiIi~~~-------~~~~~~~~iPvV~~~~~~~~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~-~~~~~ 187 (333)
T 3jvd_A 119 QAAGIIHVPV-------VGSIAPEGIPMVQLTRGELG---PGFPRVLCDDEAGFFQLTESVLGGSGMNIAALVG-EESLS 187 (333)
T ss_dssp TCSEEEECCC-------TTCCC-CCSCEEEECC-------CCSCEEEECHHHHHHHHHHHHCCSSSCEEEEEES-CTTSH
T ss_pred CCCEEEEcch-------HHHHhhCCCCEEEECccCCC---CCCCEEEEChHHHHHHHHHHHHHCCCCeEEEEeC-CCCCc
Confidence 4465555433 33455789999998874322 2223455667777777777776653332111000 01112
Q ss_pred HHHHHHHHHHhcccccccCCCCCCCccccccchhHHHhHHHHHHHHHHHhcCCcccceeecccCCCCCchHHHHHHhCCC
Q 016975 293 SATERFLQVAELDQAVVKKPSKSPSKHFASTSLNLKKNMEEASAYVHFLASGFETSRRAFGAIPGSLHPDEELCKELGLV 372 (379)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 372 (379)
...+|+ +-|..+..+... .. .... -....+.+...+..++...+ ...+|+.....-.-..+.+++.|+.
T Consensus 188 ~~~~R~-~Gf~~al~~~g~------~~-~~~~--~~~~~~~~~~~~~~ll~~~~-~~ai~~~nd~~A~g~~~al~~~G~~ 256 (333)
T 3jvd_A 188 TTQERM-RGISHAASIYGA------EV-TFHF--GHYSVESGEEMAQVVFNNGL-PDALIVASPRLMAGVMRAFTRLNVR 256 (333)
T ss_dssp HHHHHH-HHHHHHHHHTTC------EE-EEEE--CCSSHHHHHHHHHHHHHTCC-CSEEEECCHHHHHHHHHHHHHTTCC
T ss_pred cHHHHH-HHHHHHHHHCCC------CE-EEec--CCCCHHHHHHHHHHHhcCCC-CcEEEECCHHHHHHHHHHHHHcCCC
Confidence 222222 222222111110 00 0000 01112345556666666665 5667765443333566888999998
Q ss_pred CCC
Q 016975 373 TPM 375 (379)
Q Consensus 373 ~~~ 375 (379)
.|+
T Consensus 257 vP~ 259 (333)
T 3jvd_A 257 VPH 259 (333)
T ss_dssp TTT
T ss_pred CCC
Confidence 774
No 150
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=48.45 E-value=83 Score=23.51 Aligned_cols=104 Identities=11% Similarity=0.021 Sum_probs=59.8
Q ss_pred CcEEEEEcCCcC-hHHHHHHHHh-cCCeeEEecCCCCHH---HHHhh--cCEEEecCC-CCcchhHHHHHHH---cCCeE
Q 016975 172 GLEVDLYGNGED-FNQIQEAAEK-LKIVVRVYPGRDHAD---LIFHD--YKVFLNPST-TDVVCTTTAEALA---MGKIV 240 (379)
Q Consensus 172 ~~~l~i~G~g~~-~~~l~~~~~~-~~l~v~~~g~~~~~~---~~~~~--~dv~v~ps~-~E~~~~~~~EAma---~G~PV 240 (379)
..+++|+.+.+. ...+....++ .+..+. +.....+ ..+.. .|+++.-.. .+.-|..+++.+. .++||
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~v~--~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~i 82 (153)
T 3cz5_A 5 TARIMLVDDHPIVREGYRRLIERRPGYAVV--AEAADAGEAYRLYRETTPDIVVMDLTLPGPGGIEATRHIRQWDGAARI 82 (153)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTSTTEEEE--EEESSHHHHHHHHHTTCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCE
T ss_pred ccEEEEECCcHHHHHHHHHHHhhCCCcEEE--EEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCeE
Confidence 467778776655 4445555554 343432 2223333 33333 377775432 2445666666654 35676
Q ss_pred EecCC-Cc----ccccccCCCEEEeC--CHHHHHHHHHHHHhCC
Q 016975 241 VCANH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAEE 277 (379)
Q Consensus 241 I~t~~-g~----~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~ 277 (379)
|.... .. .+.+..+..+++.. +.+++.++|..++...
T Consensus 83 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~ 126 (153)
T 3cz5_A 83 LIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGR 126 (153)
T ss_dssp EEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTC
T ss_pred EEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCC
Confidence 65433 33 23445666777776 9999999999987653
No 151
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=48.41 E-value=94 Score=27.80 Aligned_cols=95 Identities=20% Similarity=0.248 Sum_probs=57.5
Q ss_pred cceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhh--cCEEE
Q 016975 141 AKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFL 218 (379)
Q Consensus 141 ~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~--~dv~v 218 (379)
+..+..+|--.-.+ ..+.++. +..++++++-+-+.. .+..++.+++.+.....+ .+.++++.. .|+++
T Consensus 23 ~~rvgiIG~G~~g~---~~~~~l~---~~~~~~~lvav~d~~-~~~~~~~a~~~g~~~~~~---~~~~~ll~~~~~D~V~ 92 (357)
T 3ec7_A 23 TLKAGIVGIGMIGS---DHLRRLA---NTVSGVEVVAVCDIV-AGRAQAALDKYAIEAKDY---NDYHDLINDKDVEVVI 92 (357)
T ss_dssp CEEEEEECCSHHHH---HHHHHHH---HTCTTEEEEEEECSS-TTHHHHHHHHHTCCCEEE---SSHHHHHHCTTCCEEE
T ss_pred eeeEEEECCcHHHH---HHHHHHH---hhCCCcEEEEEEeCC-HHHHHHHHHHhCCCCeee---CCHHHHhcCCCCCEEE
Confidence 44677777422111 2233333 234677776444433 345566666666433333 455577774 79999
Q ss_pred ecCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 219 NPSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 219 ~ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
..+....-.-.+.+|+..|++|++-..
T Consensus 93 i~tp~~~h~~~~~~al~aGk~Vl~EKP 119 (357)
T 3ec7_A 93 ITASNEAHADVAVAALNANKYVFCEKP 119 (357)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEEEESS
T ss_pred EcCCcHHHHHHHHHHHHCCCCEEeecC
Confidence 887766666668899999999998654
No 152
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=48.33 E-value=70 Score=22.67 Aligned_cols=103 Identities=12% Similarity=-0.026 Sum_probs=57.8
Q ss_pred EEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHh--hcCEEEecCC-CCcchhHHHHHHHc-----CCeEEecC
Q 016975 174 EVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPST-TDVVCTTTAEALAM-----GKIVVCAN 244 (379)
Q Consensus 174 ~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~--~~dv~v~ps~-~E~~~~~~~EAma~-----G~PVI~t~ 244 (379)
+++|+.+.+. ...+....+..+..+.........-..+. ..|+++.=.. .+.-|+.+++.+.. .+|||...
T Consensus 3 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s 82 (124)
T 1mb3_A 3 KVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVAVT 82 (124)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEEEEC
T ss_pred EEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEEEEE
Confidence 4667776554 44566666666655443221111113333 2477765332 24456677777652 56776543
Q ss_pred C-Cc----ccccccCCCEEEeC--CHHHHHHHHHHHHhC
Q 016975 245 H-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 276 (379)
Q Consensus 245 ~-g~----~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~ 276 (379)
. .. .+.+..+..+++.. +.+++.+++..++..
T Consensus 83 ~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1mb3_A 83 AFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLER 121 (124)
T ss_dssp ------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 3 22 23445666777776 999999999988764
No 153
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=47.43 E-value=87 Score=26.89 Aligned_cols=147 Identities=7% Similarity=-0.136 Sum_probs=64.3
Q ss_pred hcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCcccccccCCCEEEeCCHHHHHHHHHHHHhCCCCCCcHHHHhcCCHH
Q 016975 213 DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEEPALPTEAQRHQLSWE 292 (379)
Q Consensus 213 ~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~sw~ 292 (379)
..|-+|+.+.... .-.+-++...|+|||..+..... .....+..++.+....+...+++....++.--.. ..+..
T Consensus 83 ~vdgiIi~~~~~~-~~~~~~l~~~~iPvV~i~~~~~~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~-~~~~~ 157 (305)
T 3huu_A 83 SVDGFILLYSLKD-DPIEHLLNEFKVPYLIVGKSLNY---ENIIHIDNDNIDAAYQLTQYLYHLGHRHILFLQE-SGHYA 157 (305)
T ss_dssp CCSEEEESSCBTT-CHHHHHHHHTTCCEEEESCCCSS---TTCCEEECCHHHHHHHHHHHHHHTTCCSEEEEEE-SSCBH
T ss_pred CCCEEEEeCCcCC-cHHHHHHHHcCCCEEEECCCCcc---cCCcEEEeCHHHHHHHHHHHHHHCCCCeEEEEcC-Ccccc
Confidence 3465554432211 12233455789999998874311 1123344556777777777777654332211000 11112
Q ss_pred HHHHHHHHHHhcccccccCCCCCCCccccccchhHHHhHHHHHHHHHHH-hcCCcccceeecccCCCCCchHHHHHHhCC
Q 016975 293 SATERFLQVAELDQAVVKKPSKSPSKHFASTSLNLKKNMEEASAYVHFL-ASGFETSRRAFGAIPGSLHPDEELCKELGL 371 (379)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 371 (379)
...+|+ +-|..+.++..... . ......... +...+..+ +...+....+|+.....-.-..+.+++.|+
T Consensus 158 ~~~~R~-~Gf~~~l~~~g~~~----~--~~~~~~~~~----~~~~~~~~~l~~~~~~~ai~~~nd~~A~g~~~al~~~g~ 226 (305)
T 3huu_A 158 VTEDRS-VGFKQYCDDVKISN----D--CVVIKSMND----LRDFIKQYCIDASHMPSVIITSDVMLNMQLLNVLYEYQL 226 (305)
T ss_dssp HHHHHH-HHHHHHHHHTTCCC----C--EEEECSHHH----HHHHC--------CCCSEEEESSHHHHHHHHHHHHHTTC
T ss_pred hhHHHH-HHHHHHHHHcCCCc----c--cEEecCcHH----HHHHHHHhhhcCCCCCCEEEECChHHHHHHHHHHHHcCC
Confidence 222332 22222221111100 0 011112322 44445555 555554566666443333346678899999
Q ss_pred CCCC
Q 016975 372 VTPM 375 (379)
Q Consensus 372 ~~~~ 375 (379)
..|+
T Consensus 227 ~vP~ 230 (305)
T 3huu_A 227 RIPE 230 (305)
T ss_dssp CTTT
T ss_pred CCCc
Confidence 8774
No 154
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=46.92 E-value=88 Score=27.49 Aligned_cols=191 Identities=10% Similarity=-0.071 Sum_probs=85.5
Q ss_pred CHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHH-hhcCEEEecCCCCcchhHHHHH
Q 016975 155 GYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIF-HDYKVFLNPSTTDVVCTTTAEA 233 (379)
Q Consensus 155 g~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~-~~~dv~v~ps~~E~~~~~~~EA 233 (379)
-+..+++.+....++. ++.+++.-...+.+...+..+. +. +..|-+|+...... .-.+-++
T Consensus 82 ~~~~~~~gi~~~a~~~-g~~~~~~~~~~~~~~~~~~i~~----------------l~~~~vdGiIi~~~~~~-~~~~~~l 143 (344)
T 3kjx_A 82 VFPEVLTGINQVLEDT-ELQPVVGVTDYLPEKEEKVLYE----------------MLSWRPSGVIIAGLEHS-EAARAML 143 (344)
T ss_dssp SHHHHHHHHHHHHTSS-SSEEEEEECTTCHHHHHHHHHH----------------HHTTCCSEEEEECSCCC-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHC-CCEEEEEeCCCCHHHHHHHHHH----------------HHhCCCCEEEEECCCCC-HHHHHHH
Confidence 4556666666655443 6777666554443332222221 11 23455554332211 1223345
Q ss_pred HHcCCeEEecCC-CcccccccCCCEEEeCCHHHHHHHHHHHHhCCCCCCcHHHH-hcCCHHHHHHHHHHHHhcccccccC
Q 016975 234 LAMGKIVVCANH-PSNDFFKQFPNCRTYDDRNGFVEATLKALAEEPALPTEAQR-HQLSWESATERFLQVAELDQAVVKK 311 (379)
Q Consensus 234 ma~G~PVI~t~~-g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~~~~~~~~~~~~-~~~sw~~~~~~~~~~~~~~~~~~~~ 311 (379)
...|+|||.-+. .... ....+..++.+....+...+++....++.--.. ...+ ....+|+ +-|..+.++...
T Consensus 144 ~~~~iPvV~i~~~~~~~----~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~-~~~~~R~-~Gf~~al~~~g~ 217 (344)
T 3kjx_A 144 DAAGIPVVEIMDSDGKP----VDAMVGISHRRAGREMAQAILKAGYRRIGFMGTKMPLD-YRARKRF-EGFTEVLGKNGV 217 (344)
T ss_dssp HHCSSCEEEEEECSSCC----SSEEEEECHHHHHHHHHHHHHHHTCCSCCEEESSTTTC-HHHHHHH-HHHHHHHHHTTC
T ss_pred HhCCCCEEEEeCCCCCC----CCCEEEECcHHHHHHHHHHHHHCCCCeEEEEecCcccC-ccHHHHH-HHHHHHHHHcCC
Confidence 578999998742 2111 112344556777777777776654332221110 0011 2222332 223222211110
Q ss_pred CCCCCCccccccchhHHHhHHHHHHHHHHHhcCCcccceeecccCCCCCchHHHHHHhCCCCCC
Q 016975 312 PSKSPSKHFASTSLNLKKNMEEASAYVHFLASGFETSRRAFGAIPGSLHPDEELCKELGLVTPM 375 (379)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 375 (379)
... ..... .-....+.+...+..++...+....+|+.....-.-..+.+++.|+..|+
T Consensus 218 ~~~--~~~~~----~~~~~~~~~~~~~~~ll~~~~~~~ai~~~nd~~A~g~~~al~~~g~~vP~ 275 (344)
T 3kjx_A 218 EIE--DREFY----SGGSALAKGREMTQAMLERSPDLDFLYYSNDMIAAGGLLYLLEQGIDIPG 275 (344)
T ss_dssp CCS--CEEEC----SSCCCHHHHHHHHHHHHHHSTTCCEEEESSHHHHHHHHHHHHHTTCCTTT
T ss_pred CCC--hheEE----eCCCCHHHHHHHHHHHHhcCCCCCEEEECCHHHHHHHHHHHHHcCCCCCC
Confidence 000 00000 00111234555555555555445666655433333456788899998774
No 155
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=46.92 E-value=82 Score=23.04 Aligned_cols=105 Identities=9% Similarity=-0.018 Sum_probs=60.4
Q ss_pred CcEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHhh--cCEEEecCC-CCcchhHHHHHHHc--CCeEEecC-
Q 016975 172 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPST-TDVVCTTTAEALAM--GKIVVCAN- 244 (379)
Q Consensus 172 ~~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~--~dv~v~ps~-~E~~~~~~~EAma~--G~PVI~t~- 244 (379)
..+++|+.+.+. ...+.......+..+.........-+.+.. .|+++.-.. .+.-|+.+++.+.. ..|||...
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~ls~ 83 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSNKYDLIFLEIILSDGDGWTLCKKIRNVTTCPIVYMTY 83 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEES
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHccCCCCCEEEEEc
Confidence 456788887665 455666666666554432221111133333 477765322 23456667776643 56666543
Q ss_pred CCc----ccccccCCCEEEeC--CHHHHHHHHHHHHhC
Q 016975 245 HPS----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 276 (379)
Q Consensus 245 ~g~----~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~ 276 (379)
... .+.+..+..+++.. +.+++.+++..++..
T Consensus 84 ~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 121 (136)
T 2qzj_A 84 INEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRR 121 (136)
T ss_dssp CCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHH
Confidence 333 23455666777766 999999999887653
No 156
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=46.70 E-value=1.3e+02 Score=25.48 Aligned_cols=33 Identities=15% Similarity=0.142 Sum_probs=21.2
Q ss_pred hcCEEEe-cCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 213 DYKVFLN-PSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 213 ~~dv~v~-ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
..|.+|. |...+...-.+-++...|+|||+.+.
T Consensus 57 ~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~ 90 (306)
T 8abp_A 57 GAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDD 90 (306)
T ss_dssp TCCEEEEECSCGGGHHHHHHHHHHTTCEEEEESS
T ss_pred CCCEEEEeCCCchhhHHHHHHHHHCCCcEEEeCC
Confidence 3466554 43334333345677889999999885
No 157
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=46.39 E-value=25 Score=30.84 Aligned_cols=93 Identities=9% Similarity=-0.027 Sum_probs=55.3
Q ss_pred cccCHHHHHHHHHHhHhhcCCcEEEEEcCCcC-hHHHHHHHHhcCC---eeEEecCC-CCHH-HHHhhcCEEEecCCCCc
Q 016975 152 WSKGYKELLELLDDHQKELAGLEVDLYGNGED-FNQIQEAAEKLKI---VVRVYPGR-DHAD-LIFHDYKVFLNPSTTDV 225 (379)
Q Consensus 152 ~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~l---~v~~~g~~-~~~~-~~~~~~dv~v~ps~~E~ 225 (379)
-.|=+..|..|+.-+..-...-+++++|.... ...+.+.++..|. +-+|+|+. .+.. ..++.=|++|.....+.
T Consensus 55 L~kT~e~L~~Aa~~I~~i~~~~~ILfVgTk~~aq~aV~k~A~~tG~~yV~~RWlgGtLTN~~t~~f~ePdllvV~Dp~~d 134 (305)
T 3iz6_A 55 LGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTD 134 (305)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCCEEEECCSHHHHHHHHHHHHHHTCEEECSCCCTTTTTTTTTSCSSCCSEEEESCTTTT
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHhCCccccCcccCCcccCcccccccCCceeEEeCcccc
Confidence 34555666666665543211235788898766 3446666666554 33566553 3322 33444577777654321
Q ss_pred chhHHHHHHHcCCeEEecCC
Q 016975 226 VCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 226 ~~~~~~EAma~G~PVI~t~~ 245 (379)
-.++.||...|+|||+--.
T Consensus 135 -~qAI~EA~~lnIPtIALvD 153 (305)
T 3iz6_A 135 -HQPIKESALGNIPTIAFCD 153 (305)
T ss_dssp -HHHHHHHHHHTCCEEEEEC
T ss_pred -hHHHHHHHHcCCCEEEEEc
Confidence 3468899999999997443
No 158
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=46.21 E-value=80 Score=22.68 Aligned_cols=107 Identities=8% Similarity=-0.013 Sum_probs=59.0
Q ss_pred CCcEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHhh--cCEEEecCC-CCcchhHHHHHHHc---CCeEEec
Q 016975 171 AGLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPST-TDVVCTTTAEALAM---GKIVVCA 243 (379)
Q Consensus 171 ~~~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~--~dv~v~ps~-~E~~~~~~~EAma~---G~PVI~t 243 (379)
.+.+++|+.+.+. ...+.+..++.+..+.........-+.+.. .|+++.-.. .+.-|+.+++.+.. ..|||..
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~ 85 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVI 85 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTCCCSEEEECCC-----CHHHHHHHHHTTCCCCEEEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 3567888886665 455677777777665543221111144433 377776433 24456666666543 4566554
Q ss_pred CC-Cc----ccccccCCCEEEeC---CHHHHHHHHHHHHhCC
Q 016975 244 NH-PS----NDFFKQFPNCRTYD---DRNGFVEATLKALAEE 277 (379)
Q Consensus 244 ~~-g~----~e~i~~~~~g~~~~---~~~~l~~~i~~~l~~~ 277 (379)
.. .. .+.+..+..+++.. +.+.+.+++..++...
T Consensus 86 t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~ 127 (130)
T 3eod_A 86 SATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 (130)
T ss_dssp ECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC--
T ss_pred EcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchh
Confidence 33 33 23455667777766 6789999999887653
No 159
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=45.87 E-value=1.1e+02 Score=25.94 Aligned_cols=60 Identities=13% Similarity=0.067 Sum_probs=34.3
Q ss_pred hhcCEEEe-cCCCCcchhHHHHHHHcCCeEEecCCCcccccccCCCEEEeCCHHHHHHHHHHHHh
Q 016975 212 HDYKVFLN-PSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALA 275 (379)
Q Consensus 212 ~~~dv~v~-ps~~E~~~~~~~EAma~G~PVI~t~~g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~ 275 (379)
+..|.+|. |...+...-.+-++...|+|||+.+.... +....+..++.+....+...++.
T Consensus 60 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~----~~~~~V~~D~~~~g~~~~~~l~~ 120 (291)
T 3l49_A 60 QKPDAIIEQLGNLDVLNPWLQKINDAGIPLFTVDTATP----HAINNTTSNNYSIGAELALQMVA 120 (291)
T ss_dssp HCCSEEEEESSCHHHHHHHHHHHHHTTCCEEEESCCCT----TCSEEEEECHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCChhhhHHHHHHHHHCCCcEEEecCCCC----CcCceEecChHHHHHHHHHHHHH
Confidence 34576665 43323333445566778999999887432 12223444556656666666665
No 160
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=45.82 E-value=28 Score=30.56 Aligned_cols=43 Identities=14% Similarity=0.068 Sum_probs=30.8
Q ss_pred CCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc
Q 016975 205 DHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS 247 (379)
Q Consensus 205 ~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~ 247 (379)
++.++++..+|+.|--+..+..---+..++..|+|+|....|-
T Consensus 80 ~dl~~ll~~aDVvIDFT~p~a~~~~~~~~l~~Gv~vViGTTG~ 122 (288)
T 3ijp_A 80 DDPESAFSNTEGILDFSQPQASVLYANYAAQKSLIHIIGTTGF 122 (288)
T ss_dssp SCHHHHTTSCSEEEECSCHHHHHHHHHHHHHHTCEEEECCCCC
T ss_pred CCHHHHhcCCCEEEEcCCHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 3445778899999966654444334567889999999977654
No 161
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=45.36 E-value=74 Score=22.67 Aligned_cols=100 Identities=7% Similarity=-0.115 Sum_probs=58.2
Q ss_pred EEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHh-----hcCEEEecCC-CCcchhHHHHHHH-----cCCeEE
Q 016975 174 EVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH-----DYKVFLNPST-TDVVCTTTAEALA-----MGKIVV 241 (379)
Q Consensus 174 ~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~-----~~dv~v~ps~-~E~~~~~~~EAma-----~G~PVI 241 (379)
+++++.+.+. ...+....+..+..+.. ..+.++.+. ..|+++.=.. .+.-|..+++.+. .+.|||
T Consensus 4 ~ilivdd~~~~~~~l~~~l~~~g~~v~~---~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 80 (127)
T 2jba_A 4 RILVVEDEAPIREMVCFVLEQNGFQPVE---AEDYDSAVNQLNEPWPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVV 80 (127)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEE---ECSHHHHHTTCSSSCCSEEEEESEETTEEHHHHHHHHHTSTTTTTSCEE
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCceEEE---eCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhCcccCCCCEE
Confidence 5677776655 44566666666655443 233332222 2377665322 2345677777775 356776
Q ss_pred ecC-CCc----ccccccCCCEEEeC--CHHHHHHHHHHHHhC
Q 016975 242 CAN-HPS----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 276 (379)
Q Consensus 242 ~t~-~g~----~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~ 276 (379)
.-. .+. .+.+..+..+++.. +.+++.+++..++..
T Consensus 81 ~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 122 (127)
T 2jba_A 81 MLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRR 122 (127)
T ss_dssp EEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHC
T ss_pred EEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhc
Confidence 543 333 23445556666665 999999999988764
No 162
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=45.32 E-value=93 Score=23.18 Aligned_cols=107 Identities=14% Similarity=0.013 Sum_probs=61.3
Q ss_pred CCcEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHH---HHHh--hcCEEEecC-CCCcchhHHHHHHH---cCCeE
Q 016975 171 AGLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHAD---LIFH--DYKVFLNPS-TTDVVCTTTAEALA---MGKIV 240 (379)
Q Consensus 171 ~~~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~---~~~~--~~dv~v~ps-~~E~~~~~~~EAma---~G~PV 240 (379)
+..+++|+.+.+. ...+.....+.+.. .+.....+.+ +.+. ..|+++.-. ..+.-|+.+++.+. ...||
T Consensus 14 ~~~~iLivdd~~~~~~~l~~~L~~~~~~-~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~i 92 (152)
T 3eul_A 14 EKVRVVVGDDHPLFREGVVRALSLSGSV-NVVGEADDGAAALELIKAHLPDVALLDYRMPGMDGAQVAAAVRSYELPTRV 92 (152)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHHSSE-EEEEEESSHHHHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCSCEE
T ss_pred ceEEEEEEcCCHHHHHHHHHHHhhCCCe-EEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCeE
Confidence 3567777776554 44456666655522 2222222332 3332 247766543 23455666766654 35666
Q ss_pred EecCC-Ccc----cccccCCCEEEeC--CHHHHHHHHHHHHhCCC
Q 016975 241 VCANH-PSN----DFFKQFPNCRTYD--DRNGFVEATLKALAEEP 278 (379)
Q Consensus 241 I~t~~-g~~----e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~ 278 (379)
|.... ... +.+..+..+++.. +.+++.++|..++....
T Consensus 93 i~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~ 137 (152)
T 3eul_A 93 LLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRD 137 (152)
T ss_dssp EEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC-
T ss_pred EEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCe
Confidence 65433 332 3456667787777 99999999999988643
No 163
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=45.22 E-value=84 Score=22.65 Aligned_cols=105 Identities=10% Similarity=-0.005 Sum_probs=62.5
Q ss_pred CcEEEEEcCCcC-hHHHHHHHHhcCCe-eEEecCCCCHHHHHh---hcCEEEecCC-CCcchhHHHHHHHc-----CCeE
Q 016975 172 GLEVDLYGNGED-FNQIQEAAEKLKIV-VRVYPGRDHADLIFH---DYKVFLNPST-TDVVCTTTAEALAM-----GKIV 240 (379)
Q Consensus 172 ~~~l~i~G~g~~-~~~l~~~~~~~~l~-v~~~g~~~~~~~~~~---~~dv~v~ps~-~E~~~~~~~EAma~-----G~PV 240 (379)
..+++|+.+.+. ...++...++.+.. +.........-..+. ..|+++.=.. .+.-|+.+++.+.. .+||
T Consensus 5 ~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~pi 84 (129)
T 3h1g_A 5 SMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIPI 84 (129)
T ss_dssp -CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHCTTCCEEEECSCCSSSCHHHHHHHHHTSTTCTTCCE
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeE
Confidence 356778876655 45566667776653 332221111113332 3577775332 34557778887753 4677
Q ss_pred EecCC-Ccc----cccccCCCEEEeC--CHHHHHHHHHHHHhC
Q 016975 241 VCANH-PSN----DFFKQFPNCRTYD--DRNGFVEATLKALAE 276 (379)
Q Consensus 241 I~t~~-g~~----e~i~~~~~g~~~~--~~~~l~~~i~~~l~~ 276 (379)
|.... +.. +.+..+..+++.. +++++.+++..++..
T Consensus 85 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 85 IMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGT 127 (129)
T ss_dssp EEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHCC
T ss_pred EEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhcc
Confidence 65443 432 3455667777777 999999999998764
No 164
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=45.15 E-value=20 Score=30.64 Aligned_cols=92 Identities=12% Similarity=0.014 Sum_probs=54.8
Q ss_pred ccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcC-hHHHHHHHHhcCC---eeEEecCC-CCHH-HHHhhcCEEEecCCCC
Q 016975 151 VWSKGYKELLELLDDHQKELAGLEVDLYGNGED-FNQIQEAAEKLKI---VVRVYPGR-DHAD-LIFHDYKVFLNPSTTD 224 (379)
Q Consensus 151 ~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~l---~v~~~g~~-~~~~-~~~~~~dv~v~ps~~E 224 (379)
+-.|=+..|..|+.-+..-...-.++++|.... ...+.+.++..|. +-+|+|+. .+.. .-++.=|++|......
T Consensus 49 dL~kT~~~L~~A~~~i~~i~~~~~vlfVgTk~~~q~~V~k~A~~~g~~~v~~rwlgGtLTN~~t~~f~~PdllvV~Dp~~ 128 (252)
T 3u5c_A 49 NVGKTWEKLVLAARIIAAIPNPEDVVAISSRTFGQRAVLKFAAHTGATPIAGRFTPGSFTNYITRSFKEPRLVIVTDPRS 128 (252)
T ss_dssp CHHHHHHHHHHHHHHHTTSSSGGGEEEEECSHHHHHHHHHHHHHSSCEEEESCCCTTSSSCTTSTTCCCCSEEEESCTTT
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCEEEEEeCCcHHHHHHHHHHHHhCCceecCcccCCcccChhhhhccCCceEEEeCCcc
Confidence 345555666666665543112335788898765 3446666766664 33566553 3332 3344457777665432
Q ss_pred cchhHHHHHHHcCCeEEec
Q 016975 225 VVCTTTAEALAMGKIVVCA 243 (379)
Q Consensus 225 ~~~~~~~EAma~G~PVI~t 243 (379)
=-.++.||...|+|||+-
T Consensus 129 -d~~ai~EA~~l~IP~Ial 146 (252)
T 3u5c_A 129 -DAQAIKEASYVNIPVIAL 146 (252)
T ss_dssp -THHHHHHHHTTTCCEEEE
T ss_pred -chHHHHHHHHcCCCEEEE
Confidence 135688999999999973
No 165
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=45.10 E-value=80 Score=22.42 Aligned_cols=103 Identities=6% Similarity=-0.049 Sum_probs=57.8
Q ss_pred EEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHhh--cCEEEecCC-CCcchhHHHHHHH--cCCeEEecCC-C
Q 016975 174 EVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPST-TDVVCTTTAEALA--MGKIVVCANH-P 246 (379)
Q Consensus 174 ~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~--~dv~v~ps~-~E~~~~~~~EAma--~G~PVI~t~~-g 246 (379)
+++|+.+.+. ...+....++.+..+.........-+.+.. .|+++.=.. .+.-|+.+++.+. .+.|||.... +
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t~~~ 83 (120)
T 3f6p_A 4 KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLTAKD 83 (120)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEEESS
T ss_pred eEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEECCC
Confidence 5667766554 445566666666655433221111133333 377665332 2445666666653 3567665433 3
Q ss_pred c----ccccccCCCEEEeC--CHHHHHHHHHHHHhC
Q 016975 247 S----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 276 (379)
Q Consensus 247 ~----~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~ 276 (379)
. .+.+..+..+++.. +.+++..++..++..
T Consensus 84 ~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~~ 119 (120)
T 3f6p_A 84 SEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 119 (120)
T ss_dssp CHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred ChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHhc
Confidence 2 22345666777666 999999999887753
No 166
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=44.98 E-value=87 Score=22.80 Aligned_cols=106 Identities=10% Similarity=-0.049 Sum_probs=59.9
Q ss_pred CCcEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHhh---cCEEEecCCC-CcchhHHHHHHHc---CCeEEe
Q 016975 171 AGLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD---YKVFLNPSTT-DVVCTTTAEALAM---GKIVVC 242 (379)
Q Consensus 171 ~~~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~---~dv~v~ps~~-E~~~~~~~EAma~---G~PVI~ 242 (379)
+..+++++.+.+. ...+....+..+.++.......+.-..+.. .|+++.=... +.-|+.+++.+.. .+|+|.
T Consensus 14 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~l~~~~~~~~ii~ 93 (138)
T 2b4a_A 14 QPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVLI 93 (138)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGGSCSEEEEETTCTTSCHHHHHHHHTTSSSCCEEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEE
Confidence 4577888887665 455666666666655433322111133333 5777754332 4456777777753 577765
Q ss_pred cC--CCcccccccCCCEEEeC--CHHHHHHHHHHHHhC
Q 016975 243 AN--HPSNDFFKQFPNCRTYD--DRNGFVEATLKALAE 276 (379)
Q Consensus 243 t~--~g~~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~ 276 (379)
.. ....+.......+++.. +.+++..++..++..
T Consensus 94 ls~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~ 131 (138)
T 2b4a_A 94 LTTGRHELIESSEHNLSYLQKPFAISELRAAIDYHKPS 131 (138)
T ss_dssp EESCC--CCCCSSSCEEEEESSCCHHHHHHHHHHTCCC
T ss_pred EECCCCCHHHHHHHHHheeeCCCCHHHHHHHHHHHHHh
Confidence 43 33222211114556655 999999999887654
No 167
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=44.90 E-value=1.3e+02 Score=24.85 Aligned_cols=104 Identities=7% Similarity=-0.141 Sum_probs=60.3
Q ss_pred CcEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHh--hcCEEEecCC-CCcchhHHHHHHH---cCCeEEecC
Q 016975 172 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPST-TDVVCTTTAEALA---MGKIVVCAN 244 (379)
Q Consensus 172 ~~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~--~~dv~v~ps~-~E~~~~~~~EAma---~G~PVI~t~ 244 (379)
..+++|+.+.+. ...+....+..+..+.........-+.+. ..|+++.=-. -+.-|+.+++.+. ...|||.-.
T Consensus 23 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt 102 (250)
T 3r0j_A 23 EARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVXMPGMDGFGVLRRLRADGIDAPALFLT 102 (250)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEE
T ss_pred CceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEE
Confidence 467777776655 44455556666655443322111113332 2477765432 2445666776664 356766543
Q ss_pred C-Cc----ccccccCCCEEEeC--CHHHHHHHHHHHHh
Q 016975 245 H-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALA 275 (379)
Q Consensus 245 ~-g~----~e~i~~~~~g~~~~--~~~~l~~~i~~~l~ 275 (379)
. .. .+.+..+..+++.. +++++..+|..++.
T Consensus 103 ~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~ 140 (250)
T 3r0j_A 103 ARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILR 140 (250)
T ss_dssp CSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 3 33 23456667777777 99999999998876
No 168
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=44.76 E-value=85 Score=27.98 Aligned_cols=91 Identities=11% Similarity=0.162 Sum_probs=55.8
Q ss_pred ceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHh--hcCEEEe
Q 016975 142 KGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLN 219 (379)
Q Consensus 142 ~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~--~~dv~v~ 219 (379)
..+..+|--.-. ...++++. +.++++++-+-+ .+.+..++.+++.+.. ...+.++++. ..|+++.
T Consensus 6 ~~vgiiG~G~~g---~~~~~~l~----~~~~~~lvav~d-~~~~~~~~~~~~~g~~-----~~~~~~~~l~~~~~D~V~i 72 (354)
T 3db2_A 6 VGVAAIGLGRWA---YVMADAYT----KSEKLKLVTCYS-RTEDKREKFGKRYNCA-----GDATMEALLAREDVEMVII 72 (354)
T ss_dssp EEEEEECCSHHH---HHHHHHHT----TCSSEEEEEEEC-SSHHHHHHHHHHHTCC-----CCSSHHHHHHCSSCCEEEE
T ss_pred ceEEEEccCHHH---HHHHHHHH----hCCCcEEEEEEC-CCHHHHHHHHHHcCCC-----CcCCHHHHhcCCCCCEEEE
Confidence 356677642111 12344443 246777664433 3445666666666543 2455667884 4799888
Q ss_pred cCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 220 PSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 220 ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
.+....-.-.+.+|+..|++|++-..
T Consensus 73 ~tp~~~h~~~~~~al~~gk~vl~EKP 98 (354)
T 3db2_A 73 TVPNDKHAEVIEQCARSGKHIYVEKP 98 (354)
T ss_dssp CSCTTSHHHHHHHHHHTTCEEEEESS
T ss_pred eCChHHHHHHHHHHHHcCCEEEEccC
Confidence 77666555667899999999998665
No 169
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=44.27 E-value=1.4e+02 Score=25.08 Aligned_cols=61 Identities=8% Similarity=-0.092 Sum_probs=32.9
Q ss_pred hcCEEEe-cCCCCcchhHHHHHHHcCCeEEecCCCcccccccCCCEEEeCCHHHHHHHHHHHHh
Q 016975 213 DYKVFLN-PSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALA 275 (379)
Q Consensus 213 ~~dv~v~-ps~~E~~~~~~~EAma~G~PVI~t~~g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~ 275 (379)
..|.+|+ |...+...-.+-++...|+|||..+...... +....+..++.+....+...++.
T Consensus 64 ~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~--~~~~~V~~D~~~~g~~~~~~l~~ 125 (293)
T 3l6u_A 64 KVDAIFITTLDDVYIGSAIEEAKKAGIPVFAIDRMIRSD--AVVSSITSNNQMIGEQLASYIKN 125 (293)
T ss_dssp TCSEEEEECSCTTTTHHHHHHHHHTTCCEEEESSCCCCT--TCSEEEEECHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCChHHHHHHHHHHHHcCCCEEEecCCCCCC--cceeEEecCHHHHHHHHHHHHHH
Confidence 3465554 4444444344556667899999988743210 11223445555555555555544
No 170
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=44.00 E-value=72 Score=28.17 Aligned_cols=125 Identities=11% Similarity=0.054 Sum_probs=69.9
Q ss_pred cceEEEcC---hhhhhhhh-ccceeecccCCCCccCccccHHH----hhcCCCCCcceEEEEEecccccCHHHHHHHHHH
Q 016975 94 CHKVIRLS---AATQEYAN-SIICNVHGVNPKFLEIGKKKKEQ----QQNGTHAFAKGAYYIGKMVWSKGYKELLELLDD 165 (379)
Q Consensus 94 ~d~vi~~S---~~~~~~~~-~~i~~i~gvd~~~~~~~~~~~~~----~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~ 165 (379)
+|.++.=. .....+.+ ..+.+|||-|-+...|....... ...+. -....|.|+|-+....=..-++.++..
T Consensus 101 ~D~iviR~~~~~~~~~la~~~~vPVINag~g~~~HPtQ~LaDl~Ti~e~~g~-l~gl~va~vGD~~~~rva~Sl~~~~~~ 179 (308)
T 1ml4_A 101 CDVIVIRHPKEGAARLAAEVAEVPVINAGDGSNQHPTQTLLDLYTIKKEFGR-IDGLKIGLLGDLKYGRTVHSLAEALTF 179 (308)
T ss_dssp CSEEEEEESSTTHHHHHHHTCSSCEEEEEETTSCCHHHHHHHHHHHHHHSSC-SSSEEEEEESCTTTCHHHHHHHHHGGG
T ss_pred CcEEEEecCChhHHHHHHHhCCCCEEeCccCCccCcHHHHHHHHHHHHHhCC-CCCeEEEEeCCCCcCchHHHHHHHHHH
Confidence 57666543 22333332 35788898775455554332221 12222 234679999976432323344444433
Q ss_pred hHhhcCCcEEEEEcCCcC--hHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCCC-Ccch
Q 016975 166 HQKELAGLEVDLYGNGED--FNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTT-DVVC 227 (379)
Q Consensus 166 l~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~~-E~~~ 227 (379)
. ++++.++|.... ..++.+.+++.|..+.+. .+.++.+..+|++....+. |.+|
T Consensus 180 ----~-G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~---~d~~eav~~aDvvyt~~~q~er~~ 236 (308)
T 1ml4_A 180 ----Y-DVELYLISPELLRMPRHIVEELREKGMKVVET---TTLEDVIGKLDVLYVTRIQKERFP 236 (308)
T ss_dssp ----S-CEEEEEECCGGGCCCHHHHHHHHHTTCCEEEE---SCTHHHHTTCSEEEECCCCGGGSS
T ss_pred ----C-CCEEEEECCccccCCHHHHHHHHHcCCeEEEE---cCHHHHhcCCCEEEECCccccccC
Confidence 3 688999985332 344656666666555444 4555788999998887654 4443
No 171
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=43.59 E-value=95 Score=22.80 Aligned_cols=104 Identities=10% Similarity=0.056 Sum_probs=62.8
Q ss_pred CcEEEEEcCCcC-hHHHHHHHHhcCCeeEE--ecCCCCHHHHHhh--cCEEEecCC-CCcchhHHHHHHHc-----CCeE
Q 016975 172 GLEVDLYGNGED-FNQIQEAAEKLKIVVRV--YPGRDHADLIFHD--YKVFLNPST-TDVVCTTTAEALAM-----GKIV 240 (379)
Q Consensus 172 ~~~l~i~G~g~~-~~~l~~~~~~~~l~v~~--~g~~~~~~~~~~~--~dv~v~ps~-~E~~~~~~~EAma~-----G~PV 240 (379)
..+++|+.+.+. ...+....++.+....+ .......-+.+.. .|+++.=.. .+.-|+.+++.+.. ++||
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pi 84 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQHTPI 84 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCCE
Confidence 467888876555 55677777777765333 2222222244433 377766433 35567778887764 5677
Q ss_pred EecCC-Ccc----cccccCCCEEEeC---CHHHHHHHHHHHHh
Q 016975 241 VCANH-PSN----DFFKQFPNCRTYD---DRNGFVEATLKALA 275 (379)
Q Consensus 241 I~t~~-g~~----e~i~~~~~g~~~~---~~~~l~~~i~~~l~ 275 (379)
|.... ... +.+..+..+++.. +.+++.++|..++.
T Consensus 85 i~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~ 127 (144)
T 3kht_A 85 VILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFS 127 (144)
T ss_dssp EEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHH
Confidence 66443 332 3455666777766 67888888888765
No 172
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=43.42 E-value=94 Score=22.69 Aligned_cols=103 Identities=6% Similarity=-0.079 Sum_probs=53.2
Q ss_pred cEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHh--hcCEEEecCC-CCcchhHHHHHHH-----cCCeEEec
Q 016975 173 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPST-TDVVCTTTAEALA-----MGKIVVCA 243 (379)
Q Consensus 173 ~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~--~~dv~v~ps~-~E~~~~~~~EAma-----~G~PVI~t 243 (379)
.+++|+.+.+. ...+....++. ..+.........-+.+. ..|+++.-.. .+.-|+.+++.+. .+.|||..
T Consensus 4 ~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~ 82 (140)
T 3n53_A 4 KKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILL 82 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHHHCCSEEEEETTC------CHHHHHHTSTTCTTCCEEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEE
Confidence 45677766554 34455555544 33332222111113332 2377765433 2445666776665 46677654
Q ss_pred CC-Cc----ccccccCCCEEEeC--CHHHHHHHHHHHHhC
Q 016975 244 NH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 276 (379)
Q Consensus 244 ~~-g~----~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~ 276 (379)
.. .. .+.+..+..+++.. +.+++.++|..++..
T Consensus 83 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 122 (140)
T 3n53_A 83 FSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRT 122 (140)
T ss_dssp ECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhh
Confidence 33 32 23445556677776 999999999988763
No 173
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=43.13 E-value=41 Score=26.24 Aligned_cols=88 Identities=11% Similarity=0.163 Sum_probs=52.6
Q ss_pred HHHHHHhcCCeeEEecCCCCHH--HHHhhc-----CEEEecCCCCcchhHHHHHH-HcCCeEEecCCC---cccccc---
Q 016975 187 IQEAAEKLKIVVRVYPGRDHAD--LIFHDY-----KVFLNPSTTDVVCTTTAEAL-AMGKIVVCANHP---SNDFFK--- 252 (379)
Q Consensus 187 l~~~~~~~~l~v~~~g~~~~~~--~~~~~~-----dv~v~ps~~E~~~~~~~EAm-a~G~PVI~t~~g---~~e~i~--- 252 (379)
+++.+.++|..+.++-.=..-+ +.++.+ .+.+||.-+--.+.++.+|+ +.++|+|=-... ..|.+.
T Consensus 41 l~~~a~~~g~~~~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSvAlrDAl~~~~~P~VEVHiSNi~aRE~FRh~S 120 (153)
T 3lwz_A 41 LEIQAQGMDVALSHLQSNAEHALIDSIHQARGNTDFILINPAAFTHTSVALRDALLGVQIPFIEIHLSNVHAREPFRHHS 120 (153)
T ss_dssp HHHHHHHTTEEEEEEECSCHHHHHHHHHHHTTTCSEEEEECGGGGGTCHHHHHHHHHHTCCEEEEESSCGGGSCGGGGCC
T ss_pred HHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCceEEEccccceechHHHHHHHHhcCCCEEEEEcCCccccchhhhcc
Confidence 4445556666666552211111 444433 37889988888889999997 678999876552 255333
Q ss_pred ---cCCCEEEeC-CHHHHHHHHHHHH
Q 016975 253 ---QFPNCRTYD-DRNGFVEATLKAL 274 (379)
Q Consensus 253 ---~~~~g~~~~-~~~~l~~~i~~~l 274 (379)
+--.|.+.- -.+...-++..++
T Consensus 121 ~~s~~a~GvI~G~G~~gY~lAl~~~~ 146 (153)
T 3lwz_A 121 YLSDIAVGVICGLGADGYNFALQAAV 146 (153)
T ss_dssp SSGGGSSEEEESSTTHHHHHHHHHHH
T ss_pred cccccceEEEEecChhHHHHHHHHHH
Confidence 334677766 5555555555443
No 174
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus}
Probab=43.11 E-value=63 Score=25.09 Aligned_cols=91 Identities=11% Similarity=-0.029 Sum_probs=58.7
Q ss_pred HHHHHHHHhcCCeeEEecCCCCHH--HHHhhc------CEEEecCCCCcchhHHHHHH-HcCCeEEecCCC---cccc--
Q 016975 185 NQIQEAAEKLKIVVRVYPGRDHAD--LIFHDY------KVFLNPSTTDVVCTTTAEAL-AMGKIVVCANHP---SNDF-- 250 (379)
Q Consensus 185 ~~l~~~~~~~~l~v~~~g~~~~~~--~~~~~~------dv~v~ps~~E~~~~~~~EAm-a~G~PVI~t~~g---~~e~-- 250 (379)
..+++.+.+++..+.++-.=..-+ +.++.+ -+.+||.-+--.+.++.+|+ +.++|+|=-... .+|.
T Consensus 31 ~~l~~~a~~~g~~v~~~QSN~EgeLId~Ih~a~~~~~dgiIINpgA~THtSvAlrDAl~~v~~P~VEVHiSNi~aRE~FR 110 (149)
T 2uyg_A 31 ALCEAWGAELGLGVVFRQTNYEGQLIEWVQQAHQEGFLAIVLNPGALTHYSYALLDAIRAQPLPVVEVHLTNLHAREEFR 110 (149)
T ss_dssp HHHHHHHHHTTCCEEEEECSCHHHHHHHHHHTTTTTCSEEEEECGGGGGTCHHHHHHHHTSCSCEEEEESSCGGGSCGGG
T ss_pred HHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhccCCeeEEEEccchhccccHHHHHHHHhCCCCEEEEEecCcccccccc
Confidence 345566677777777763222222 555544 26889988888899999997 568899865542 2443
Q ss_pred ----cccCCCEEEeC-CHHHHHHHHHHHHh
Q 016975 251 ----FKQFPNCRTYD-DRNGFVEATLKALA 275 (379)
Q Consensus 251 ----i~~~~~g~~~~-~~~~l~~~i~~~l~ 275 (379)
+.+--.|.+.- -.+...-++..++.
T Consensus 111 h~S~~s~~a~GvI~G~G~~gY~lAl~~~~~ 140 (149)
T 2uyg_A 111 RHSVTAPACRGIVSGFGPLSYKLALVYLAE 140 (149)
T ss_dssp GCCSSGGGSSEEEESSTTHHHHHHHHHHHH
T ss_pred cccccccceeEEEEecCHHHHHHHHHHHHH
Confidence 34445677777 66677667666554
No 175
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Probab=42.89 E-value=81 Score=27.88 Aligned_cols=122 Identities=8% Similarity=0.073 Sum_probs=67.1
Q ss_pred cceEEEcC--h-hhhhhhh-c-cceeecccCCCCccCccccHH----HhhcCCCCCcceEEEEEecccccCHHHHHHHHH
Q 016975 94 CHKVIRLS--A-ATQEYAN-S-IICNVHGVNPKFLEIGKKKKE----QQQNGTHAFAKGAYYIGKMVWSKGYKELLELLD 164 (379)
Q Consensus 94 ~d~vi~~S--~-~~~~~~~-~-~i~~i~gvd~~~~~~~~~~~~----~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~ 164 (379)
+|.++.=. + ....+.+ . .+.+|||-|-+...|...... ....+.. ....|.|+|-+....=..-++.++.
T Consensus 99 ~D~iviR~~~~~~~~~la~~~~~vPVINag~G~~~HPtQaLaDl~Ti~e~~g~l-~gl~va~vGD~~~~rva~Sl~~~~~ 177 (310)
T 3csu_A 99 VDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRL-DNLHVAMVGDLKYGRTVHSLTQALA 177 (310)
T ss_dssp CSEEEEEESSTTHHHHHHHHCTTCCEEEEEETTSCCHHHHHHHHHHHHHHHSCS-SSCEEEEESCTTTCHHHHHHHHHHH
T ss_pred CCEEEEECCChhHHHHHHHhcCCCCEEcCccCCCCCchHHHHHHHHHHHHhCCc-CCcEEEEECCCCCCchHHHHHHHHH
Confidence 57766544 2 2333333 3 578889887445555432221 1122222 2457999997643232334444443
Q ss_pred HhHhhcCCcEEEEEcCCcC--hHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCCC
Q 016975 165 DHQKELAGLEVDLYGNGED--FNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTT 223 (379)
Q Consensus 165 ~l~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~~ 223 (379)
..+++++.+++.... ...+.+.+++.|..+.+. .+.++.+..+|++......
T Consensus 178 ----~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~---~d~~eav~~aDvvyt~~~q 231 (310)
T 3csu_A 178 ----KFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLH---SSIEEVMAEVDILYMTRVQ 231 (310)
T ss_dssp ----TSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEEC---SCGGGTTTTCSEEEECC--
T ss_pred ----hCCCCEEEEECCcccccCHHHHHHHHHcCCeEEEE---cCHHHHhcCCCEEEECCcc
Confidence 355789999995322 244555566666554443 4455778899998877653
No 176
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} SCOP: c.23.13.1
Probab=42.34 E-value=43 Score=26.17 Aligned_cols=89 Identities=12% Similarity=0.153 Sum_probs=55.0
Q ss_pred HHHHHHHhcCCeeEEecCCCCHH--HHHhhc-----CEEEecCCCCcchhHHHHHH-HcCCeEEecCCC---cccc----
Q 016975 186 QIQEAAEKLKIVVRVYPGRDHAD--LIFHDY-----KVFLNPSTTDVVCTTTAEAL-AMGKIVVCANHP---SNDF---- 250 (379)
Q Consensus 186 ~l~~~~~~~~l~v~~~g~~~~~~--~~~~~~-----dv~v~ps~~E~~~~~~~EAm-a~G~PVI~t~~g---~~e~---- 250 (379)
.+++.+.+++..+.++-.=..-+ +.++.+ .+.+||.-+--.+.++.+|+ +.++|+|=-... .+|.
T Consensus 34 ~l~~~a~~~g~~l~~~QSN~EGeLId~Ih~a~~~~dgiIINpgA~THtSvAlrDAl~~v~~P~VEVHiSNi~aRE~FRh~ 113 (154)
T 1uqr_A 34 HLQQSAQAQGYELDYFQANGEESLINRIHQAFQNTDFIIINPGAFTHTSVAIRDALLAVSIPFIEVHLSNVHAREPFRHH 113 (154)
T ss_dssp HHHHHHHHTTCEEEEEECSSHHHHHHHHHHTTTTCCEEEEECTTHHHHCHHHHHHHHHHTCCEEEEESSCGGGSCGGGSC
T ss_pred HHHHHHHHCCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEECcchhccchHHHHHHHHhCCCCEEEEEecCcccccccccc
Confidence 35555666777766663222222 555555 36889988877889999997 578999965542 2443
Q ss_pred --cccCCCEEEeC-CHHHHHHHHHHHH
Q 016975 251 --FKQFPNCRTYD-DRNGFVEATLKAL 274 (379)
Q Consensus 251 --i~~~~~g~~~~-~~~~l~~~i~~~l 274 (379)
+.+--.|.++- -.+...-++..++
T Consensus 114 S~~s~~a~GvI~G~G~~gY~lAl~a~~ 140 (154)
T 1uqr_A 114 SYLSDVAKGVICGLGAKGYDYALDFAI 140 (154)
T ss_dssp CSSGGGSSEEEESSTTHHHHHHHHHHH
T ss_pred cccCcceeEEEEecCHHHHHHHHHHHH
Confidence 33445677766 5555555554443
No 177
>1gqo_A Dehydroquinase; dehydratase, lyase; 2.10A {Bacillus subtilis} SCOP: c.23.13.1
Probab=42.29 E-value=44 Score=25.75 Aligned_cols=90 Identities=18% Similarity=0.246 Sum_probs=56.2
Q ss_pred HHHHHHHHhcCCeeEEecCCCCHH--HHHhhc-----CEEEecCCCCcchhHHHHHH-HcCCeEEecCCC---ccccc--
Q 016975 185 NQIQEAAEKLKIVVRVYPGRDHAD--LIFHDY-----KVFLNPSTTDVVCTTTAEAL-AMGKIVVCANHP---SNDFF-- 251 (379)
Q Consensus 185 ~~l~~~~~~~~l~v~~~g~~~~~~--~~~~~~-----dv~v~ps~~E~~~~~~~EAm-a~G~PVI~t~~g---~~e~i-- 251 (379)
..+++.+.+++..+.++-.=..-+ +.++.+ .+.+||.-+--.+.++.+|+ +.++|+|=-... .+|.+
T Consensus 32 ~~l~~~a~~~g~~~~~~QSN~EgeLid~Ih~a~~~~dgiiiNpgA~THtSvAlrDAl~~v~~P~VEVHiSNi~aRE~FRh 111 (143)
T 1gqo_A 32 TDLFQFAEALHIQLTFFQSNHEGDLIDAIHEAEEQYSGIVLNPGALSHYSYAIRDAVSSISLPVVEVHLSNLYAREEFRH 111 (143)
T ss_dssp HHHHHHHHHHTCEEEEEECSCHHHHHHHHHHHTTTCSEEEEECGGGGGTCHHHHHHHHTSCSCEEEEESSCGGGSCGGGG
T ss_pred HHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEEccchhccccHHHHHHHHhCCCCEEEEEecCccccccccc
Confidence 335556667777777663222222 444444 36889988888899999997 468899865542 24433
Q ss_pred ----ccCCCEEEeC-CHHHHHHHHHHHH
Q 016975 252 ----KQFPNCRTYD-DRNGFVEATLKAL 274 (379)
Q Consensus 252 ----~~~~~g~~~~-~~~~l~~~i~~~l 274 (379)
.+--.|.+.- -.+...-++..++
T Consensus 112 ~S~~s~~a~GvI~G~G~~gY~lAl~~~~ 139 (143)
T 1gqo_A 112 QSVIAPVAKGQIVGLGAEGYKLAVRYLL 139 (143)
T ss_dssp CCSSGGGSSEEEESSTTHHHHHHHHHHH
T ss_pred ccccccceeEEEEecCHHHHHHHHHHHH
Confidence 3445677766 6666666666554
No 178
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=42.17 E-value=1.8e+02 Score=25.54 Aligned_cols=92 Identities=15% Similarity=0.102 Sum_probs=56.5
Q ss_pred ceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHh--hcCEEEe
Q 016975 142 KGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLN 219 (379)
Q Consensus 142 ~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~--~~dv~v~ 219 (379)
..+..+|--.-. ..+++++.+ .++++++-+-+. +.+..++.+++.+.. ....+.++++. ..|+++.
T Consensus 6 ~~igiiG~G~~g---~~~~~~l~~----~~~~~l~av~d~-~~~~~~~~~~~~~~~----~~~~~~~~ll~~~~~D~V~i 73 (330)
T 3e9m_A 6 IRYGIMSTAQIV---PRFVAGLRE----SAQAEVRGIASR-RLENAQKMAKELAIP----VAYGSYEELCKDETIDIIYI 73 (330)
T ss_dssp EEEEECSCCTTH---HHHHHHHHH----SSSEEEEEEBCS-SSHHHHHHHHHTTCC----CCBSSHHHHHHCTTCSEEEE
T ss_pred EEEEEECchHHH---HHHHHHHHh----CCCcEEEEEEeC-CHHHHHHHHHHcCCC----ceeCCHHHHhcCCCCCEEEE
Confidence 356666632111 124455543 367776644443 335566666665531 12355567887 6799888
Q ss_pred cCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 220 PSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 220 ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
.+....-.-.+.+|+..|++|++-..
T Consensus 74 ~tp~~~h~~~~~~al~~gk~vl~EKP 99 (330)
T 3e9m_A 74 PTYNQGHYSAAKLALSQGKPVLLEKP 99 (330)
T ss_dssp CCCGGGHHHHHHHHHHTTCCEEECSS
T ss_pred cCCCHHHHHHHHHHHHCCCeEEEeCC
Confidence 77666555567899999999998665
No 179
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=41.95 E-value=1.2e+02 Score=26.73 Aligned_cols=43 Identities=14% Similarity=0.083 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCCcccceeecccCCCCCchHHHHHHhCCCCCC
Q 016975 333 EASAYVHFLASGFETSRRAFGAIPGSLHPDEELCKELGLVTPM 375 (379)
Q Consensus 333 ~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 375 (379)
.+...+..++...+....+|+..........+.+++.|+..|+
T Consensus 191 ~~~~~~~~~L~~~~~~~aI~~~~d~~a~g~~~al~~~G~~vP~ 233 (350)
T 3h75_A 191 RAYRQAQQLLKRYPKTQLVWSANDEMALGAMQAARELGRKPGT 233 (350)
T ss_dssp HHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHHHHHTTCCBTT
T ss_pred HHHHHHHHHHHhCCCcCEEEECChHHHHHHHHHHHHcCCCCCC
Confidence 4555566666555556666665544445567788888987663
No 180
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=41.65 E-value=1.1e+02 Score=27.17 Aligned_cols=91 Identities=15% Similarity=0.095 Sum_probs=56.7
Q ss_pred ceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHh--hcCEEEe
Q 016975 142 KGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLN 219 (379)
Q Consensus 142 ~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~--~~dv~v~ 219 (379)
..+..+|--.-.+ ..+.++.. .++++++-+-+ .+.+..++.+++.+ +..+ .+.++++. ..|+++.
T Consensus 5 ~rvgiiG~G~~g~---~~~~~l~~----~~~~~l~av~d-~~~~~~~~~a~~~g--~~~~---~~~~~~l~~~~~D~V~i 71 (344)
T 3euw_A 5 LRIALFGAGRIGH---VHAANIAA----NPDLELVVIAD-PFIEGAQRLAEANG--AEAV---ASPDEVFARDDIDGIVI 71 (344)
T ss_dssp EEEEEECCSHHHH---HHHHHHHH----CTTEEEEEEEC-SSHHHHHHHHHTTT--CEEE---SSHHHHTTCSCCCEEEE
T ss_pred eEEEEECCcHHHH---HHHHHHHh----CCCcEEEEEEC-CCHHHHHHHHHHcC--Ccee---CCHHHHhcCCCCCEEEE
Confidence 3566776421111 23444433 46776664433 34456666666666 2322 45567887 7799998
Q ss_pred cCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 220 PSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 220 ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
.+....-.-.+.+|+..|++|++-..
T Consensus 72 ~tp~~~h~~~~~~al~~gk~v~~EKP 97 (344)
T 3euw_A 72 GSPTSTHVDLITRAVERGIPALCEKP 97 (344)
T ss_dssp CSCGGGHHHHHHHHHHTTCCEEECSC
T ss_pred eCCchhhHHHHHHHHHcCCcEEEECC
Confidence 87766666667899999999998665
No 181
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=41.40 E-value=70 Score=25.13 Aligned_cols=104 Identities=10% Similarity=0.017 Sum_probs=60.8
Q ss_pred CcEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHhh--cCEEEecCC-CCcchhHHHHHHH---cCCeEEecC
Q 016975 172 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPST-TDVVCTTTAEALA---MGKIVVCAN 244 (379)
Q Consensus 172 ~~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~--~dv~v~ps~-~E~~~~~~~EAma---~G~PVI~t~ 244 (379)
..+++|+.+.+. ...+.......|..+.........-+.+.. .|+++.=.. -+.-|+.+++.+. ...|||.-.
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~lt 86 (184)
T 3rqi_A 7 DKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEKFEFITVXLHLGNDSGLSLIAPLCDLQPDARILVLT 86 (184)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTTSCCSEEEECSEETTEESHHHHHHHHHHCTTCEEEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEeccCCCccHHHHHHHHHhcCCCCCEEEEe
Confidence 467888877665 455666666666654333222111144433 377765322 2445677776654 367776543
Q ss_pred C-Cc----ccccccCCCEEEeC--CHHHHHHHHHHHHh
Q 016975 245 H-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALA 275 (379)
Q Consensus 245 ~-g~----~e~i~~~~~g~~~~--~~~~l~~~i~~~l~ 275 (379)
. .. .+.+..+..+++.. +++++..+|..++.
T Consensus 87 ~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~ 124 (184)
T 3rqi_A 87 GYASIATAVQAVKDGADNYLAKPANVESILAALQTNAS 124 (184)
T ss_dssp SSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTHH
T ss_pred CCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHH
Confidence 3 33 23456667787777 99999888876543
No 182
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=40.49 E-value=1.1e+02 Score=22.88 Aligned_cols=105 Identities=6% Similarity=-0.040 Sum_probs=63.7
Q ss_pred CCcEEEEEcCCcC-hHHHHHHHHhcCCe-eEEecCCCCHHHHHhh--cCEEEecCCC-CcchhHHHHHHH-----cCCeE
Q 016975 171 AGLEVDLYGNGED-FNQIQEAAEKLKIV-VRVYPGRDHADLIFHD--YKVFLNPSTT-DVVCTTTAEALA-----MGKIV 240 (379)
Q Consensus 171 ~~~~l~i~G~g~~-~~~l~~~~~~~~l~-v~~~g~~~~~~~~~~~--~dv~v~ps~~-E~~~~~~~EAma-----~G~PV 240 (379)
.+.+++|+-|.+. ...++...++.|.. +.....-...-++++. .|+.+.=-.. +.-|+.+++.+- ..+||
T Consensus 11 k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~~~DlillD~~MP~mdG~el~~~ir~~~~~~~ipv 90 (134)
T 3to5_A 11 KNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPV 90 (134)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTCCE
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCCCCeE
Confidence 3678888877665 45566777777764 3222111111134443 3777643222 445777887774 46787
Q ss_pred EecCC-Cccc----ccccCCCEEEeC--CHHHHHHHHHHHHh
Q 016975 241 VCANH-PSND----FFKQFPNCRTYD--DRNGFVEATLKALA 275 (379)
Q Consensus 241 I~t~~-g~~e----~i~~~~~g~~~~--~~~~l~~~i~~~l~ 275 (379)
|.-.. +..+ .+..+-++++.. ++++|.++|.+++.
T Consensus 91 I~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~ 132 (134)
T 3to5_A 91 LMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFE 132 (134)
T ss_dssp EEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 75433 4432 445667788877 99999999998764
No 183
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=40.46 E-value=97 Score=22.05 Aligned_cols=104 Identities=8% Similarity=-0.043 Sum_probs=59.0
Q ss_pred CcEEEEEcCCcC-hHHHHHHHHhcCC-eeEEecCCCCHHHHHhh--cCEEEecCC-CCcchhHHHHHHHc-----CCeEE
Q 016975 172 GLEVDLYGNGED-FNQIQEAAEKLKI-VVRVYPGRDHADLIFHD--YKVFLNPST-TDVVCTTTAEALAM-----GKIVV 241 (379)
Q Consensus 172 ~~~l~i~G~g~~-~~~l~~~~~~~~l-~v~~~g~~~~~~~~~~~--~dv~v~ps~-~E~~~~~~~EAma~-----G~PVI 241 (379)
..+++++.+.+. ...+....+..+. .+.........-..+.. .|+++.=.. .+.-|..+++.+.. .+|||
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~~ii 83 (128)
T 1jbe_A 4 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRAXXAMSALPVL 83 (128)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTTCCCCEEEEESCCSSSCHHHHHHHHHC--CCTTCCEE
T ss_pred ccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCcEE
Confidence 356777776554 4455666666554 33322221111133333 377765332 24456777877754 46666
Q ss_pred ec-CCCc----ccccccCCCEEEeC--CHHHHHHHHHHHHh
Q 016975 242 CA-NHPS----NDFFKQFPNCRTYD--DRNGFVEATLKALA 275 (379)
Q Consensus 242 ~t-~~g~----~e~i~~~~~g~~~~--~~~~l~~~i~~~l~ 275 (379)
.. .... .+.+..+..+++.. +.+++.+++..++.
T Consensus 84 ~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~ 124 (128)
T 1jbe_A 84 MVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFE 124 (128)
T ss_dssp EEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHH
Confidence 43 3333 23455666777766 99999999988764
No 184
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=40.39 E-value=1.6e+02 Score=26.07 Aligned_cols=117 Identities=11% Similarity=0.039 Sum_probs=65.8
Q ss_pred cceEEEcC--hh-hhhhhh-ccceeecccCCCCccCccccHH----HhhcCCCCCcceEEEEEecccccCHHHHHHHHHH
Q 016975 94 CHKVIRLS--AA-TQEYAN-SIICNVHGVNPKFLEIGKKKKE----QQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDD 165 (379)
Q Consensus 94 ~d~vi~~S--~~-~~~~~~-~~i~~i~gvd~~~~~~~~~~~~----~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~ 165 (379)
+|.++.=. +. ...+.+ ..+.+|||-| +...|...... ....+. -....|.|+|-+ ..=..-++.++..
T Consensus 104 ~D~iviR~~~~~~~~~lA~~~~vPVINag~-~~~HPtQaLaDl~Ti~e~~g~-l~glkva~vGD~--~rva~Sl~~~~~~ 179 (323)
T 3gd5_A 104 VDGLAIRTFAQTELEEYAHYAGIPVINALT-DHEHPCQVVADLLTIRENFGR-LAGLKLAYVGDG--NNVAHSLLLGCAK 179 (323)
T ss_dssp CSEEEEECSSHHHHHHHHHHHCSCEEEEEC-SSCCHHHHHHHHHHHHHHHSC-CTTCEEEEESCC--CHHHHHHHHHHHH
T ss_pred CCEEEEecCChhHHHHHHHhCCCCEEeCCC-CCCCcHHHHHHHHHHHHHhCC-CCCCEEEEECCC--CcHHHHHHHHHHH
Confidence 68776544 22 333332 3678889888 55655433222 112222 235679999987 2113344555543
Q ss_pred hHhhcCCcEEEEEcCCcC--hHH----HHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCC
Q 016975 166 HQKELAGLEVDLYGNGED--FNQ----IQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPST 222 (379)
Q Consensus 166 l~~~~~~~~l~i~G~g~~--~~~----l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~ 222 (379)
+ ++++.++|.... ... .++.+++.|..+.+. .+.++.+..+||+....+
T Consensus 180 ~-----G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~---~d~~eav~~aDvvyt~~w 234 (323)
T 3gd5_A 180 V-----GMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQIL---RDPFEAARGAHILYTDVW 234 (323)
T ss_dssp H-----TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEE---SCHHHHHTTCSEEEECCC
T ss_pred c-----CCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEE---CCHHHHhcCCCEEEEece
Confidence 3 688999985322 122 333444556555544 455678899999887765
No 185
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=40.21 E-value=1.3e+02 Score=26.50 Aligned_cols=93 Identities=15% Similarity=0.173 Sum_probs=59.0
Q ss_pred ceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhh--cCEEEe
Q 016975 142 KGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLN 219 (379)
Q Consensus 142 ~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~--~dv~v~ 219 (379)
..+..+|--... -...+.++.. .++++++-+-+ .+.+..++.+++.+.. +. ..+.++++.. .|+++.
T Consensus 24 irigiIG~G~ig--~~~~~~~~~~----~~~~~lvav~d-~~~~~a~~~a~~~g~~-~~---y~d~~ell~~~~iDaV~I 92 (350)
T 4had_A 24 LRFGIISTAKIG--RDNVVPAIQD----AENCVVTAIAS-RDLTRAREMADRFSVP-HA---FGSYEEMLASDVIDAVYI 92 (350)
T ss_dssp EEEEEESCCHHH--HHTHHHHHHH----CSSEEEEEEEC-SSHHHHHHHHHHHTCS-EE---ESSHHHHHHCSSCSEEEE
T ss_pred cEEEEEcChHHH--HHHHHHHHHh----CCCeEEEEEEC-CCHHHHHHHHHHcCCC-ee---eCCHHHHhcCCCCCEEEE
Confidence 456677632111 1123444443 57777765544 4456677778877753 22 2455678865 488888
Q ss_pred cCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 220 PSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 220 ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
.+....-.-.+.+|+..|++|+|=..
T Consensus 93 ~tP~~~H~~~~~~al~aGkhVl~EKP 118 (350)
T 4had_A 93 PLPTSQHIEWSIKAADAGKHVVCEKP 118 (350)
T ss_dssp CSCGGGHHHHHHHHHHTTCEEEECSC
T ss_pred eCCCchhHHHHHHHHhcCCEEEEeCC
Confidence 87766656668899999999999665
No 186
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=40.13 E-value=46 Score=24.40 Aligned_cols=50 Identities=12% Similarity=0.175 Sum_probs=30.8
Q ss_pred EEEEcCCcCh-----HHHHHHHHhcCCeeEEe-cCCCCHHHHHhhcCEEEecCCCC
Q 016975 175 VDLYGNGEDF-----NQIQEAAEKLKIVVRVY-PGRDHADLIFHDYKVFLNPSTTD 224 (379)
Q Consensus 175 l~i~G~g~~~-----~~l~~~~~~~~l~v~~~-g~~~~~~~~~~~~dv~v~ps~~E 224 (379)
++++|.|-.. ..+++.+++.++.+.+. -.+...+..+..+|+++.+....
T Consensus 25 lvvC~sG~gTS~ll~~kl~~~~~~~gi~~~V~~~~~~~~~~~~~~~DlIist~~l~ 80 (113)
T 1tvm_A 25 IVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIETYMDGVHLICTTARVD 80 (113)
T ss_dssp EEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEEECTTTTTTSTTSCSEEEESSCCC
T ss_pred EEECCCCHHHHHHHHHHHHHHHHHcCCeEEEEEecHHHHhhccCCCCEEEECCccc
Confidence 7778877763 45666777777765443 23333333356789999876543
No 187
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=40.07 E-value=97 Score=28.08 Aligned_cols=70 Identities=9% Similarity=0.080 Sum_probs=47.5
Q ss_pred cCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhh--cCEEEecCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 170 LAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 170 ~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~--~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
.++++++-+-+ .+.+..++.+++.+.. . ..+.++++.. .|+++..+....-.-.+.+|+..|++|++-+.
T Consensus 25 ~~~~~l~av~d-~~~~~~~~~a~~~g~~--~---~~~~~ell~~~~vD~V~i~tp~~~H~~~~~~al~aGk~Vl~EKP 96 (387)
T 3moi_A 25 HPDAQIVAACD-PNEDVRERFGKEYGIP--V---FATLAEMMQHVQMDAVYIASPHQFHCEHVVQASEQGLHIIVEKP 96 (387)
T ss_dssp CTTEEEEEEEC-SCHHHHHHHHHHHTCC--E---ESSHHHHHHHSCCSEEEECSCGGGHHHHHHHHHHTTCEEEECSC
T ss_pred CCCeEEEEEEe-CCHHHHHHHHHHcCCC--e---ECCHHHHHcCCCCCEEEEcCCcHHHHHHHHHHHHCCCceeeeCC
Confidence 46676664444 3445556666666543 2 3456678876 79999887766555667899999999998664
No 188
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=39.93 E-value=1.2e+02 Score=27.20 Aligned_cols=93 Identities=15% Similarity=0.086 Sum_probs=58.6
Q ss_pred cceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhh--cCEEE
Q 016975 141 AKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFL 218 (379)
Q Consensus 141 ~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~--~dv~v 218 (379)
+..|..+|-- .-+...++.++. .++++++-+-+ .+.+..++.+++.+. ..+ ..+.++++.. .|+++
T Consensus 26 ~irvgiiG~G--~~~~~~~~~~~~-----~~~~~lvav~d-~~~~~a~~~a~~~~~-~~~---~~~~~~ll~~~~vD~V~ 93 (361)
T 3u3x_A 26 ELRFAAVGLN--HNHIYGQVNCLL-----RAGARLAGFHE-KDDALAAEFSAVYAD-ARR---IATAEEILEDENIGLIV 93 (361)
T ss_dssp CCEEEEECCC--STTHHHHHHHHH-----HTTCEEEEEEC-SCHHHHHHHHHHSSS-CCE---ESCHHHHHTCTTCCEEE
T ss_pred CcEEEEECcC--HHHHHHHHHHhh-----cCCcEEEEEEc-CCHHHHHHHHHHcCC-Ccc---cCCHHHHhcCCCCCEEE
Confidence 3467778742 123334445543 26777765554 345666677777652 111 3455678876 68988
Q ss_pred ecCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 219 NPSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 219 ~ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
..+....-.-.+.+|+..|++|+|-..
T Consensus 94 I~tp~~~H~~~~~~al~aGkhVl~EKP 120 (361)
T 3u3x_A 94 SAAVSSERAELAIRAMQHGKDVLVDKP 120 (361)
T ss_dssp ECCCHHHHHHHHHHHHHTTCEEEEESC
T ss_pred EeCChHHHHHHHHHHHHCCCeEEEeCC
Confidence 877665555567899999999998665
No 189
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=39.56 E-value=1.8e+02 Score=24.73 Aligned_cols=62 Identities=13% Similarity=-0.003 Sum_probs=34.2
Q ss_pred hcCEEEe-cCCCCcchhHHHHHHHcCCeEEecCCCcccccccCCCEEEeCCHHHHHHHHHHHHhC
Q 016975 213 DYKVFLN-PSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAE 276 (379)
Q Consensus 213 ~~dv~v~-ps~~E~~~~~~~EAma~G~PVI~t~~g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~~ 276 (379)
..|.+|. |...+...-.+-++...|+|||+.+....+. +....+..++.+....+...++..
T Consensus 61 ~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~--~~~~~V~~d~~~~g~~~~~~l~~~ 123 (305)
T 3g1w_A 61 NPAGIAISAIDPVELTDTINKAVDAGIPIVLFDSGAPDS--HAHSFLGTNNYNAGMNAAYKMAEL 123 (305)
T ss_dssp CCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCTTS--CCSCEEECCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCCHHHHHHHHHHHHHCCCcEEEECCCCCCC--ceeEEECcCHHHHHHHHHHHHHHH
Confidence 4566655 4333444445666778999999988743210 112234444555555555555554
No 190
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=39.39 E-value=1e+02 Score=24.96 Aligned_cols=99 Identities=12% Similarity=0.081 Sum_probs=48.5
Q ss_pred HHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcC
Q 016975 158 ELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMG 237 (379)
Q Consensus 158 ~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G 237 (379)
.+++++.+.++... ++-++|.+.....+.....-++.++..+...+.++ .--.+.++.+-|
T Consensus 82 Dil~al~~a~~~~~--kIavvg~~~~~~~~~~~~~ll~~~i~~~~~~~~~e-----------------~~~~i~~l~~~G 142 (196)
T 2q5c_A 82 DTMRAVYNAKRFGN--ELALIAYKHSIVDKHEIEAMLGVKIKEFLFSSEDE-----------------ITTLISKVKTEN 142 (196)
T ss_dssp HHHHHHHHHGGGCS--EEEEEEESSCSSCHHHHHHHHTCEEEEEEECSGGG-----------------HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhCC--cEEEEeCcchhhHHHHHHHHhCCceEEEEeCCHHH-----------------HHHHHHHHHHCC
Confidence 45666666655432 56666655554445555555555555543332222 112344555555
Q ss_pred CeEEecCCCcccccc-cCCCEEEeC-CHHHHHHHHHHHHh
Q 016975 238 KIVVCANHPSNDFFK-QFPNCRTYD-DRNGFVEATLKALA 275 (379)
Q Consensus 238 ~PVI~t~~g~~e~i~-~~~~g~~~~-~~~~l~~~i~~~l~ 275 (379)
.-||.-+.-..+... -+-++++.. +.+++.+++.+++.
T Consensus 143 ~~vvVG~~~~~~~A~~~Gl~~vli~sg~eSI~~Ai~eA~~ 182 (196)
T 2q5c_A 143 IKIVVSGKTVTDEAIKQGLYGETINSGEESLRRAIEEALN 182 (196)
T ss_dssp CCEEEECHHHHHHHHHTTCEEEECCCCHHHHHHHHHHHHH
T ss_pred CeEEECCHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHH
Confidence 554444332222221 223344444 57777777776653
No 191
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=38.79 E-value=1.8e+02 Score=24.58 Aligned_cols=74 Identities=16% Similarity=0.181 Sum_probs=42.3
Q ss_pred EEEEEcC-CcChHHHHHHHHhc-CCeeEE-ecCCCCHHHHHh-hcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc
Q 016975 174 EVDLYGN-GEDFNQIQEAAEKL-KIVVRV-YPGRDHADLIFH-DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS 247 (379)
Q Consensus 174 ~l~i~G~-g~~~~~l~~~~~~~-~l~v~~-~g~~~~~~~~~~-~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~ 247 (379)
++.|+|. |.--..+.+.+.+. +..+.- ...-++.++++. .+|+.|--+.-+..--.+..++..|+|+|+...|.
T Consensus 2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~~~~~~~~DvvIDfT~p~a~~~~~~~a~~~g~~~VigTTG~ 79 (245)
T 1p9l_A 2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLLTDGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGF 79 (245)
T ss_dssp EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTHHHHHTTCCEEEECSCTTTHHHHHHHHHHTTCEEEECCCCC
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHHHHhccCCcEEEEccChHHHHHHHHHHHHcCCCEEEcCCCC
Confidence 5677783 66544454444433 333321 122233335554 78999955555554444556788999999866654
No 192
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=38.45 E-value=1.1e+02 Score=22.24 Aligned_cols=104 Identities=12% Similarity=0.034 Sum_probs=57.9
Q ss_pred cEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHhh--cCEEEecCCC-CcchhHHHHHHH--------cCCeE
Q 016975 173 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPSTT-DVVCTTTAEALA--------MGKIV 240 (379)
Q Consensus 173 ~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~--~dv~v~ps~~-E~~~~~~~EAma--------~G~PV 240 (379)
.+++|+.+.+. ...+....+..+..+.........-+.+.. .|+++.=... +.-|+.+++.+. ...|+
T Consensus 11 ~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~~~~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~~~i 90 (140)
T 3c97_A 11 LSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNRQFDVIIMDIQMPVMDGLEAVSEIRNYERTHNTKRASI 90 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHHSCCSEEEECTTCCSSCHHHHHHHHHHHHHHHTCCCCCC
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHhhhhhcCCCceEE
Confidence 56778876665 344566666556555544321111133333 4887764332 334666666664 24566
Q ss_pred EecCC-Cc-ccccccCCCEEEeC--CHHHHHHHHHHHHhC
Q 016975 241 VCANH-PS-NDFFKQFPNCRTYD--DRNGFVEATLKALAE 276 (379)
Q Consensus 241 I~t~~-g~-~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~ 276 (379)
|.... .. ......+..+++.. +.+++.++|..++..
T Consensus 91 i~~s~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 130 (140)
T 3c97_A 91 IAITADTIDDDRPGAELDEYVSKPLNPNQLRDVVLTCHSE 130 (140)
T ss_dssp EEEESSCCSCCCCCSSCSEEEESSCCHHHHHHHHHHHHC-
T ss_pred EEEeCccchhHHHhCChhheEeCCCCHHHHHHHHHHHhCC
Confidence 54332 22 22334444567766 999999999988753
No 193
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=38.39 E-value=1.1e+02 Score=22.24 Aligned_cols=102 Identities=8% Similarity=-0.022 Sum_probs=58.0
Q ss_pred EEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHh--hcCEEEecCC-CCcchhHHHHHHH---cCCeEEecCC-
Q 016975 174 EVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPST-TDVVCTTTAEALA---MGKIVVCANH- 245 (379)
Q Consensus 174 ~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~--~~dv~v~ps~-~E~~~~~~~EAma---~G~PVI~t~~- 245 (379)
+++|+.+.+. ...+.......+..+.........-+.+. ..|+++.=.. .+.-|+.+++.+. ..+|||....
T Consensus 6 ~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~ls~~ 85 (137)
T 3cfy_A 6 RVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIATAH 85 (137)
T ss_dssp EEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHHCCSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEEESS
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEec
Confidence 5778887666 34455555555555433222111113333 3487775432 2345666666664 4567665433
Q ss_pred Cc----ccccccCCCEEEeC--CHHHHHHHHHHHHh
Q 016975 246 PS----NDFFKQFPNCRTYD--DRNGFVEATLKALA 275 (379)
Q Consensus 246 g~----~e~i~~~~~g~~~~--~~~~l~~~i~~~l~ 275 (379)
+. .+.+..+..+++.. +.+++..+|..++.
T Consensus 86 ~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 121 (137)
T 3cfy_A 86 GSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLK 121 (137)
T ss_dssp CCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHH
Confidence 33 23445666777766 99999999988764
No 194
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=38.33 E-value=2.3e+02 Score=25.70 Aligned_cols=97 Identities=16% Similarity=0.108 Sum_probs=60.7
Q ss_pred cceEEEEEecccccCHHHHHHHHHHhHhhc----CCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhh--c
Q 016975 141 AKGAYYIGKMVWSKGYKELLELLDDHQKEL----AGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHD--Y 214 (379)
Q Consensus 141 ~~~il~vgrl~~~Kg~~~li~a~~~l~~~~----~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~--~ 214 (379)
+..|..||--...+ .-++++.++.... ++++++-+-+ .+.+..++.+++.+.. .+ ..+.++++.. .
T Consensus 26 klrvgiIG~G~ig~---~h~~~~~~~~~~~~~~~~~~elvav~d-~~~~~a~~~a~~~~~~-~~---y~d~~~ll~~~~v 97 (412)
T 4gqa_A 26 RLNIGLIGSGFMGQ---AHADAYRRAAMFYPDLPKRPHLYALAD-QDQAMAERHAAKLGAE-KA---YGDWRELVNDPQV 97 (412)
T ss_dssp EEEEEEECCSHHHH---HHHHHHHHHHHHCTTSSSEEEEEEEEC-SSHHHHHHHHHHHTCS-EE---ESSHHHHHHCTTC
T ss_pred cceEEEEcCcHHHH---HHHHHHHhccccccccCCCeEEEEEEc-CCHHHHHHHHHHcCCC-eE---ECCHHHHhcCCCC
Confidence 56788887422222 2355565544322 2345543333 4556777778877753 22 2455577764 5
Q ss_pred CEEEecCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 215 KVFLNPSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 215 dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
|+++..+....-.-.+.+|+..|++|+|-..
T Consensus 98 D~V~I~tp~~~H~~~~~~al~aGkhVl~EKP 128 (412)
T 4gqa_A 98 DVVDITSPNHLHYTMAMAAIAAGKHVYCEKP 128 (412)
T ss_dssp CEEEECSCGGGHHHHHHHHHHTTCEEEEESC
T ss_pred CEEEECCCcHHHHHHHHHHHHcCCCeEeecC
Confidence 8888877766666678999999999999766
No 195
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=38.06 E-value=1.5e+02 Score=24.83 Aligned_cols=30 Identities=13% Similarity=0.303 Sum_probs=21.7
Q ss_pred CEEEecCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 215 KVFLNPSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 215 dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
|+++.....+. -.++.||...|+|||+--.
T Consensus 159 dll~v~Dp~~e-~~ai~EA~~l~IPvIaivD 188 (231)
T 3bbn_B 159 DIVIIVDQQEE-YTALRECITLGIPTICLID 188 (231)
T ss_dssp SEEEESCTTTT-HHHHHHHHTTTCCEEECCC
T ss_pred CEEEEeCCccc-cHHHHHHHHhCCCEEEEec
Confidence 66665544322 3689999999999999644
No 196
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=37.39 E-value=1.2e+02 Score=25.21 Aligned_cols=120 Identities=11% Similarity=0.020 Sum_probs=63.4
Q ss_pred eEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEe-cCCCCHHHHHhhcCEEEecC
Q 016975 143 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVY-PGRDHADLIFHDYKVFLNPS 221 (379)
Q Consensus 143 ~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~-g~~~~~~~~~~~~dv~v~ps 221 (379)
.++.+|.- ......+..+.+.. ..++++-... .++++.++++. .+.+. +... ++.+..+|+++...
T Consensus 33 ~VLVVGgG------~va~~ka~~Ll~~G--A~VtVvap~~-~~~l~~l~~~~--~i~~i~~~~~--~~dL~~adLVIaAT 99 (223)
T 3dfz_A 33 SVLVVGGG------TIATRRIKGFLQEG--AAITVVAPTV-SAEINEWEAKG--QLRVKRKKVG--EEDLLNVFFIVVAT 99 (223)
T ss_dssp CEEEECCS------HHHHHHHHHHGGGC--CCEEEECSSC-CHHHHHHHHTT--SCEEECSCCC--GGGSSSCSEEEECC
T ss_pred EEEEECCC------HHHHHHHHHHHHCC--CEEEEECCCC-CHHHHHHHHcC--CcEEEECCCC--HhHhCCCCEEEECC
Confidence 46666642 22234444454443 4455665433 35677776643 34555 3333 23467889888776
Q ss_pred CCCcchhHHHHHHHcCCeEEecCCCc-cc-----ccccCCCEEEeC---CHHHHHHHHHHHHh
Q 016975 222 TTDVVCTTTAEALAMGKIVVCANHPS-ND-----FFKQFPNCRTYD---DRNGFVEATLKALA 275 (379)
Q Consensus 222 ~~E~~~~~~~EAma~G~PVI~t~~g~-~e-----~i~~~~~g~~~~---~~~~l~~~i~~~l~ 275 (379)
-.+.....+.++...|+||-..+.+. .+ ++..++--+-+. ..-.++..|.+-++
T Consensus 100 ~d~~~N~~I~~~ak~gi~VNvvD~p~~~~f~~Paiv~rg~l~iaIST~G~sP~la~~iR~~ie 162 (223)
T 3dfz_A 100 NDQAVNKFVKQHIKNDQLVNMASSFSDGNIQIPAQFSRGRLSLAISTDGASPLLTKRIKEDLS 162 (223)
T ss_dssp CCTHHHHHHHHHSCTTCEEEC-----CCSEECCEEEEETTEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCEEEEeCCcccCeEEEeeEEEeCCEEEEEECCCCCcHHHHHHHHHHH
Confidence 66666667777766899999988854 33 333333222222 23456666655544
No 197
>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*
Probab=37.18 E-value=94 Score=25.67 Aligned_cols=126 Identities=10% Similarity=-0.126 Sum_probs=64.6
Q ss_pred EecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCC-------------------CCHH
Q 016975 148 GKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGR-------------------DHAD 208 (379)
Q Consensus 148 grl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~-------------------~~~~ 208 (379)
|.-....++..|++.+.+........++.|+|.|.--..+.+...... ..++.|.+ ++.+
T Consensus 56 G~~g~gY~v~~L~~~~~~~lg~~~~~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~ 134 (211)
T 2dt5_A 56 GTRGVGYTVPVLKRELRHILGLNRKWGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVGRPVRGGVIEHVDLLP 134 (211)
T ss_dssp CCTTTCEEHHHHHHHHHHHHTTTSCEEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTCEETTEEEEEGGGHH
T ss_pred cCCceeEEhHHHHHHHHHHhCcCCCCEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhhhhcCCeeecHHhHH
Confidence 433334456777777766554445678899998876444433211111 22222222 2222
Q ss_pred HHHh-hcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCcccccccCCCEEEeC-CHHHHHHHHHHHHhC
Q 016975 209 LIFH-DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYD-DRNGFVEATLKALAE 276 (379)
Q Consensus 209 ~~~~-~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~~e~i~~~~~g~~~~-~~~~l~~~i~~~l~~ 276 (379)
++++ ..|+.+.......-.-..-.+..+|+.+|..-.+..-.+.+. -.+.+ |...=.+.+...+++
T Consensus 135 ell~~~ID~ViIA~Ps~~~~ei~~~l~~aGi~~Ilnf~P~~l~vp~~--v~v~~vdl~~~l~~l~~~~~~ 202 (211)
T 2dt5_A 135 QRVPGRIEIALLTVPREAAQKAADLLVAAGIKGILNFAPVVLEVPKE--VAVENVDFLAGLTRLSFAILN 202 (211)
T ss_dssp HHSTTTCCEEEECSCHHHHHHHHHHHHHHTCCEEEECSSSCCCCCTT--SEEEECCSHHHHHHHHHHHHS
T ss_pred HHHHcCCCEEEEeCCchhHHHHHHHHHHcCCCEEEECCcccccCCCC--cEEEecCHHHHHHHHHHHhcC
Confidence 4444 357777665443333456677889999887655554333332 23333 544434444444443
No 198
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=37.14 E-value=1.7e+02 Score=23.88 Aligned_cols=105 Identities=8% Similarity=-0.049 Sum_probs=62.4
Q ss_pred cEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHh--hcCEEEecCC-CCcchhHHHHHHHc--CCeEEecCC-
Q 016975 173 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPST-TDVVCTTTAEALAM--GKIVVCANH- 245 (379)
Q Consensus 173 ~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~--~~dv~v~ps~-~E~~~~~~~EAma~--G~PVI~t~~- 245 (379)
.+++|+.+.+. ...+....+..+..+.........-+.+. ..|+++.=.. .+.-|+.+++.+.. ++|||.-..
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvilD~~l~~~~g~~~~~~lr~~~~~~ii~lt~~ 85 (238)
T 2gwr_A 6 QRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGIDVCRVLRADSGVPIVMLTAK 85 (238)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHTTCCCCEEEEEET
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEEeCC
Confidence 46777776665 44566666666666554433333223333 2477775432 24456667766643 677765432
Q ss_pred Cc----ccccccCCCEEEeC--CHHHHHHHHHHHHhCC
Q 016975 246 PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAEE 277 (379)
Q Consensus 246 g~----~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~ 277 (379)
.. .+.+..+..+++.. +++++.++|..++...
T Consensus 86 ~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 123 (238)
T 2gwr_A 86 TDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRN 123 (238)
T ss_dssp TCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCCC
T ss_pred CCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 22 33455666777665 9999999999987753
No 199
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=37.03 E-value=1.8e+02 Score=24.21 Aligned_cols=43 Identities=16% Similarity=0.064 Sum_probs=26.9
Q ss_pred HHHHHHHHHhcCCcccceeecccCCCCCchHHHHHHhCCCCCC
Q 016975 333 EASAYVHFLASGFETSRRAFGAIPGSLHPDEELCKELGLVTPM 375 (379)
Q Consensus 333 ~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 375 (379)
.+...+..++...+....+|+..........+.+++.|+..|+
T Consensus 162 ~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~ 204 (280)
T 3gyb_A 162 AGYTETLALLKEHPEVTAIFSSNDITAIGALGAARELGLRVPE 204 (280)
T ss_dssp HHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHHHTCCTTT
T ss_pred HHHHHHHHHHhCCCCCCEEEECChHHHHHHHHHHHHcCCCCCC
Confidence 4444555555555555667765444444567788999998773
No 200
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=36.95 E-value=89 Score=27.40 Aligned_cols=71 Identities=13% Similarity=0.215 Sum_probs=46.0
Q ss_pred cCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHH-hhcCEEEecCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 170 LAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIF-HDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 170 ~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~-~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
.++++++.+-+ .+.+..++.+++.+. ... ..+.++++ ...|+++..+......-.+.+|+..|++|++-..
T Consensus 23 ~~~~~~~~v~d-~~~~~~~~~~~~~~~-~~~---~~~~~~~l~~~~D~V~i~tp~~~h~~~~~~al~~gk~V~~EKP 94 (325)
T 2ho3_A 23 SGEYQLVAIYS-RKLETAATFASRYQN-IQL---FDQLEVFFKSSFDLVYIASPNSLHFAQAKAALSAGKHVILEKP 94 (325)
T ss_dssp TTSEEEEEEEC-SSHHHHHHHGGGSSS-CEE---ESCHHHHHTSSCSEEEECSCGGGHHHHHHHHHHTTCEEEEESS
T ss_pred CCCeEEEEEEe-CCHHHHHHHHHHcCC-CeE---eCCHHHHhCCCCCEEEEeCChHHHHHHHHHHHHcCCcEEEecC
Confidence 35676654433 334555566665553 122 23455677 5689999888766666667899999999998653
No 201
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=36.87 E-value=2.9e+02 Score=26.42 Aligned_cols=90 Identities=14% Similarity=0.083 Sum_probs=56.5
Q ss_pred ccCHHHHHHHHHHh-Hhh----cCCcEEEEEcC---CcChHHHHHHHHhcCCeeEE-e-cCCCCHH-HHHhhcCEEEecC
Q 016975 153 SKGYKELLELLDDH-QKE----LAGLEVDLYGN---GEDFNQIQEAAEKLKIVVRV-Y-PGRDHAD-LIFHDYKVFLNPS 221 (379)
Q Consensus 153 ~Kg~~~li~a~~~l-~~~----~~~~~l~i~G~---g~~~~~l~~~~~~~~l~v~~-~-g~~~~~~-~~~~~~dv~v~ps 221 (379)
..|.+..++++-+. ... ..+-.+-|+|. +.|..+++++.++.|+++.. + |...-++ .-+..|++-|..+
T Consensus 182 ~~G~~~a~~al~~~~~~~~~~~~~~~~VNIlG~~~~~gD~~eikrlL~~~Gi~v~~~~~gg~t~~ei~~~~~A~~niv~~ 261 (533)
T 1mio_A 182 SAGHHIANNTVMTDIIGKGNKEQKKYSINVLGEYNIGGDAWEMDRVLEKIGYHVNATLTGDATYEKVQNADKADLNLVQC 261 (533)
T ss_dssp HHHHHHHHHHHHHHTTBCCCCCCCTTEEEEEEECCBTSHHHHHHHHHHHHTCEEEEEEETTCCHHHHHBTTSCSEEEESC
T ss_pred hHHHHHHHHHHHHHhcccccCCCCCCeEEEEcCCCChhhHHHHHHHHHHCCCeEEEEeCCCCCHHHHHhhhcCCEEEEEC
Confidence 35777777766543 211 11346777774 44578999999999997663 3 4444444 4444555655544
Q ss_pred CCCcchhHHHHHHH--cCCeEEecC
Q 016975 222 TTDVVCTTTAEALA--MGKIVVCAN 244 (379)
Q Consensus 222 ~~E~~~~~~~EAma--~G~PVI~t~ 244 (379)
. ..+..+.+.|. +|+|.+...
T Consensus 262 ~--~~~~~~A~~Leer~GiP~i~~~ 284 (533)
T 1mio_A 262 H--RSINYIAEMMETKYGIPWIKCN 284 (533)
T ss_dssp H--HHHHHHHHHHHHHHCCCEEECC
T ss_pred H--HHHHHHHHHHHHHhCCCeEEec
Confidence 2 24677788884 799999864
No 202
>1jg7_A BGT, DNA beta-glucosyltransferase; glycosyltransferase; HET: DNA UDP; 1.65A {Enterobacteria phage T4} SCOP: c.87.1.1 PDB: 1bgu_A* 1bgt_A* 1ixy_A* 1c3j_A* 1jej_A* 1jg6_A* 1j39_A* 1jiu_A* 1jiv_A* 1jix_A* 1m5r_A* 1nvk_A* 1qkj_A* 1sxp_A* 1sxq_A* 2bgt_A 2bgu_A* 1nzd_A* 1nzf_A*
Probab=36.33 E-value=99 Score=25.79 Aligned_cols=125 Identities=11% Similarity=0.156 Sum_probs=67.0
Q ss_pred eEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCC--eeEEecCCCCHHHHHhhcCE---E
Q 016975 143 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHADLIFHDYKV---F 217 (379)
Q Consensus 143 ~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l--~v~~~g~~~~~~~~~~~~dv---~ 217 (379)
-++|-|.+.....-..+++-+- ...+.+-+.|+.... +++. .+... .-.|.|.++..+-.-+.+.. +
T Consensus 183 d~iyggsfrsg~re~kmve~lf-----dtgl~ieffg~~~~~-qfkn--p~~pwt~~pvf~gki~~~~~~~~ns~a~a~~ 254 (351)
T 1jg7_A 183 DVIYGGSFRSGQRESKMVEFLF-----DTGLNIEFFGNAREK-QFKN--PKYPWTKAPVFTGKIPMNMVSEKNSQAIAAL 254 (351)
T ss_dssp EEEEECCCGGGTTHHHHHHHHS-----SCSSCEEEESSCCGG-GCCC--TTSCCSSCCEEEECCCGGGHHHHHTTEEEEE
T ss_pred eeeeccccccCchHHHHHHHHH-----hcCcceeeecchhHH-hccC--CCCCCcCCCccCCcCCHHHHhhccccceEEE
Confidence 4667777766665555555442 134556666654321 0000 00111 12455666665522233322 2
Q ss_pred EecC-CC-Cc-chhHHHHHHHcCCeEEecCC-Cc-ccccccCCCEEEeCCHHHHHHHHHHHHhCC
Q 016975 218 LNPS-TT-DV-VCTTTAEALAMGKIVVCANH-PS-NDFFKQFPNCRTYDDRNGFVEATLKALAEE 277 (379)
Q Consensus 218 v~ps-~~-E~-~~~~~~EAma~G~PVI~t~~-g~-~e~i~~~~~g~~~~~~~~l~~~i~~~l~~~ 277 (379)
|.-- .+ .. .-+-+-|+||+..-...-.. .. ..++.+.. +.++|-+++.+.+.++-+++
T Consensus 255 i~gdk~y~~n~it~rvwe~~as~av~~~d~~fd~~~~i~~~a~--fyv~nr~elid~in~~k~~~ 317 (351)
T 1jg7_A 255 IIGDKNYNDNFITLRVWETMASDAVMLIDEEFDTKHRIINDAR--FYVNNRAELIDRVNELKHSD 317 (351)
T ss_dssp ECCCGGGTTTCCCHHHHHHHTSSSEEEEEGGGCTTCCSCSCGG--GEECSHHHHHHHHHHHHHCH
T ss_pred EeccccccCCeecHHHHHHHhhhhHhhhhcccCcccccccCce--eEecCHHHHHHHHhhccchH
Confidence 2221 11 22 24568999998876554443 33 55665533 77889999999999976654
No 203
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=36.32 E-value=1.2e+02 Score=22.01 Aligned_cols=104 Identities=9% Similarity=-0.003 Sum_probs=61.7
Q ss_pred CcEEEEEcCCcC-hHHHHHHHHhcCC--eeEEecCCCCHHHHHh--------hcCEEEecCC-CCcchhHHHHHHH----
Q 016975 172 GLEVDLYGNGED-FNQIQEAAEKLKI--VVRVYPGRDHADLIFH--------DYKVFLNPST-TDVVCTTTAEALA---- 235 (379)
Q Consensus 172 ~~~l~i~G~g~~-~~~l~~~~~~~~l--~v~~~g~~~~~~~~~~--------~~dv~v~ps~-~E~~~~~~~EAma---- 235 (379)
..+++|+.+.+. ...+....++.+. .+.........-..+. ..|+++.=.. .+.-|..+++.+.
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~ 86 (143)
T 2qvg_A 7 KVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDDSS 86 (143)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTSGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHcCcc
Confidence 356777776655 4556666776665 4444433222224454 3577775433 2445677777765
Q ss_pred -cCCeEEecCC-Cc----ccccccCCCEEEeC--CHHHHHHHHHHHHh
Q 016975 236 -MGKIVVCANH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALA 275 (379)
Q Consensus 236 -~G~PVI~t~~-g~----~e~i~~~~~g~~~~--~~~~l~~~i~~~l~ 275 (379)
..+|+|.... .. .+.+..+..+++.. +.+++.+++.....
T Consensus 87 ~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~~ 134 (143)
T 2qvg_A 87 FTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQS 134 (143)
T ss_dssp GTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred ccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHH
Confidence 4677765433 32 23445566677766 99999998776544
No 204
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=36.11 E-value=44 Score=24.58 Aligned_cols=65 Identities=11% Similarity=0.026 Sum_probs=44.2
Q ss_pred HHhhcCEEEecCCC-----CcchhHHHHHHHcCCeEEecCC-Ccc---cccccCCCEEEeC-CHHHHHHHHHHHHh
Q 016975 210 IFHDYKVFLNPSTT-----DVVCTTTAEALAMGKIVVCANH-PSN---DFFKQFPNCRTYD-DRNGFVEATLKALA 275 (379)
Q Consensus 210 ~~~~~dv~v~ps~~-----E~~~~~~~EAma~G~PVI~t~~-g~~---e~i~~~~~g~~~~-~~~~l~~~i~~~l~ 275 (379)
-++.+|++|..+-. +..-.-+-.|...|+|+|+-.. |.. +.+.+. ..-++. |.+.+.++|...++
T Consensus 35 ~I~~~~~vIvL~G~~t~~s~wv~~EI~~A~~~gkpIigV~~~g~~~~P~~l~~~-a~~iV~Wn~~~I~~aI~~~~~ 109 (111)
T 1eiw_A 35 TPEDADAVIVLAGLWGTRRDEILGAVDLARKSSKPIITVRPYGLENVPPELEAV-SSEVVGWNPHCIRDALEDALD 109 (111)
T ss_dssp CSSSCSEEEEEGGGTTTSHHHHHHHHHHHTTTTCCEEEECCSSSSCCCTTHHHH-CSEEECSCHHHHHHHHHHHHC
T ss_pred ccccCCEEEEEeCCCcCCChHHHHHHHHHHHcCCCEEEEEcCCCCcCCHHHHhh-CceeccCCHHHHHHHHHhccC
Confidence 47788888866432 2333447788899999999998 542 222221 225677 99999999988754
No 205
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=35.98 E-value=1.8e+02 Score=25.61 Aligned_cols=71 Identities=14% Similarity=0.168 Sum_probs=47.2
Q ss_pred cCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHh--hcCEEEecCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 170 LAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 170 ~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~--~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
.++++++-+-+ .+.+..++.+++.+.. .. ..+.++++. ..|+++..+....-.-.+.+|+..|++|++-..
T Consensus 24 ~~~~~l~av~d-~~~~~~~~~~~~~~~~-~~---~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP 96 (344)
T 3ezy_A 24 IDDAILYAISD-VREDRLREMKEKLGVE-KA---YKDPHELIEDPNVDAVLVCSSTNTHSELVIACAKAKKHVFCEKP 96 (344)
T ss_dssp STTEEEEEEEC-SCHHHHHHHHHHHTCS-EE---ESSHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESC
T ss_pred CCCcEEEEEEC-CCHHHHHHHHHHhCCC-ce---eCCHHHHhcCCCCCEEEEcCCCcchHHHHHHHHhcCCeEEEECC
Confidence 46776664333 3445566666665532 11 245567887 789999887766555667899999999998664
No 206
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=35.86 E-value=1.4e+02 Score=26.60 Aligned_cols=93 Identities=15% Similarity=0.099 Sum_probs=57.4
Q ss_pred cceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHh--hcCEEE
Q 016975 141 AKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFL 218 (379)
Q Consensus 141 ~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~--~~dv~v 218 (379)
+..+..+|--...+ ..++.++.. .++++++-+-+ .+.+..++.+++.+... ..+.++++. ..|+++
T Consensus 27 ~~rigiIG~G~~g~--~~~~~~l~~----~~~~~l~av~d-~~~~~~~~~a~~~g~~~-----~~~~~~ll~~~~~D~V~ 94 (350)
T 3rc1_A 27 PIRVGVIGCADIAW--RRALPALEA----EPLTEVTAIAS-RRWDRAKRFTERFGGEP-----VEGYPALLERDDVDAVY 94 (350)
T ss_dssp CEEEEEESCCHHHH--HTHHHHHHH----CTTEEEEEEEE-SSHHHHHHHHHHHCSEE-----EESHHHHHTCTTCSEEE
T ss_pred ceEEEEEcCcHHHH--HHHHHHHHh----CCCeEEEEEEc-CCHHHHHHHHHHcCCCC-----cCCHHHHhcCCCCCEEE
Confidence 45677777421111 123444433 46777664433 34455666677666542 245557776 479998
Q ss_pred ecCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 219 NPSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 219 ~ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
..+....-.-.+.+|+..|++|++-..
T Consensus 95 i~tp~~~h~~~~~~al~aGk~Vl~EKP 121 (350)
T 3rc1_A 95 VPLPAVLHAEWIDRALRAGKHVLAEKP 121 (350)
T ss_dssp ECCCGGGHHHHHHHHHHTTCEEEEESS
T ss_pred ECCCcHHHHHHHHHHHHCCCcEEEeCC
Confidence 887766656667899999999998654
No 207
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=35.65 E-value=93 Score=26.10 Aligned_cols=85 Identities=13% Similarity=0.092 Sum_probs=54.0
Q ss_pred HHHHHhcCC-eeEEe--cCCCCHHHHH------hhcCEEEecCC---CCcchhHHHHHHHcCCeEEecCCCcccccccCC
Q 016975 188 QEAAEKLKI-VVRVY--PGRDHADLIF------HDYKVFLNPST---TDVVCTTTAEALAMGKIVVCANHPSNDFFKQFP 255 (379)
Q Consensus 188 ~~~~~~~~l-~v~~~--g~~~~~~~~~------~~~dv~v~ps~---~E~~~~~~~EAma~G~PVI~t~~g~~e~i~~~~ 255 (379)
..+.++.|. .++|+ ++..+.+++. ...++.+=|+- .|.|.-.+-.++..|+|-|-..+= .-+.|..
T Consensus 151 iaml~dmG~~SvKffPm~Gl~~l~E~~avAka~a~~g~~lEPTGGIdl~N~~~I~~i~l~aGv~~viPHIY--ssIIDk~ 228 (249)
T 3m0z_A 151 IALLKDMGGSSIKYFPMGGLKHRAEFEAVAKACAAHDFWLEPTGGIDLENYSEILKIALDAGVSKIIPHIY--SSIIDKA 228 (249)
T ss_dssp HHHHHHTTCCEEEECCCTTTTTHHHHHHHHHHHHHTTCEEEEBSSCCTTTHHHHHHHHHHHTCSCBCCBCC--GGGBCTT
T ss_pred HHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhhHHHHHHHHHHcCCCeeccccc--ceeccCC
Confidence 334444444 45555 4455554221 22266666652 378888889999999999987772 2244556
Q ss_pred CEEEeC-CHHHHHHHHHHHH
Q 016975 256 NCRTYD-DRNGFVEATLKAL 274 (379)
Q Consensus 256 ~g~~~~-~~~~l~~~i~~~l 274 (379)
+|..-+ |+.++.+.+.+++
T Consensus 229 TG~TrpedV~~ll~~~K~l~ 248 (249)
T 3m0z_A 229 SGNTRPADVRQLLEMTKQLV 248 (249)
T ss_dssp TCCBCHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHhh
Confidence 777766 8888888887764
No 208
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=35.31 E-value=1.1e+02 Score=27.03 Aligned_cols=94 Identities=14% Similarity=0.049 Sum_probs=57.4
Q ss_pred cceEEEEEec-ccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhh--cCEE
Q 016975 141 AKGAYYIGKM-VWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVF 217 (379)
Q Consensus 141 ~~~il~vgrl-~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~--~dv~ 217 (379)
+..+..+|-- ...+. .+.++..+ .++++++-+-+ .+.+..++.+++.+. ..+ ..+.++++.. .|++
T Consensus 18 ~irvgiIG~G~~~g~~---~~~~l~~~---~~~~~lvav~d-~~~~~~~~~a~~~~~-~~~---~~~~~~ll~~~~vD~V 86 (340)
T 1zh8_A 18 KIRLGIVGCGIAAREL---HLPALKNL---SHLFEITAVTS-RTRSHAEEFAKMVGN-PAV---FDSYEELLESGLVDAV 86 (340)
T ss_dssp CEEEEEECCSHHHHHT---HHHHHHTT---TTTEEEEEEEC-SSHHHHHHHHHHHSS-CEE---ESCHHHHHHSSCCSEE
T ss_pred ceeEEEEecCHHHHHH---HHHHHHhC---CCceEEEEEEc-CCHHHHHHHHHHhCC-Ccc---cCCHHHHhcCCCCCEE
Confidence 5578888753 22222 23444321 25676654444 344566666776664 122 2455577764 6999
Q ss_pred EecCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 218 LNPSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 218 v~ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
+..+....-.-.+.+|+..|++|++-..
T Consensus 87 ~i~tp~~~H~~~~~~al~aGkhVl~EKP 114 (340)
T 1zh8_A 87 DLTLPVELNLPFIEKALRKGVHVICEKP 114 (340)
T ss_dssp EECCCGGGHHHHHHHHHHTTCEEEEESS
T ss_pred EEeCCchHHHHHHHHHHHCCCcEEEeCC
Confidence 8887665555567799999999999654
No 209
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=35.06 E-value=1.1e+02 Score=27.05 Aligned_cols=69 Identities=19% Similarity=0.194 Sum_probs=46.1
Q ss_pred CcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHh--hcCEEEecCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 172 GLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 172 ~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~--~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
+++++-+-+ .+.+..++.+++.+.. .. ..+.++++. ..|+++..+....-.-.+.+|+..|++|++-..
T Consensus 28 ~~~l~av~d-~~~~~a~~~a~~~~~~-~~---~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al~~GkhVl~EKP 98 (334)
T 3ohs_X 28 EHQVVAVAA-RDLSRAKEFAQKHDIP-KA---YGSYEELAKDPNVEVAYVGTQHPQHKAAVMLCLAAGKAVLCEKP 98 (334)
T ss_dssp TEEEEEEEC-SSHHHHHHHHHHHTCS-CE---ESSHHHHHHCTTCCEEEECCCGGGHHHHHHHHHHTTCEEEEESS
T ss_pred CeEEEEEEc-CCHHHHHHHHHHcCCC-cc---cCCHHHHhcCCCCCEEEECCCcHHHHHHHHHHHhcCCEEEEECC
Confidence 345554444 4456667777776642 11 245557887 579999887666555567899999999998664
No 210
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=35.04 E-value=1.3e+02 Score=21.73 Aligned_cols=103 Identities=10% Similarity=0.038 Sum_probs=58.8
Q ss_pred cEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHhh--cCEEEecCC-CCcchhHHHHHHH---cCCeEEec-C
Q 016975 173 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPST-TDVVCTTTAEALA---MGKIVVCA-N 244 (379)
Q Consensus 173 ~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~--~dv~v~ps~-~E~~~~~~~EAma---~G~PVI~t-~ 244 (379)
.+++|+.+.+. ...+....+..+..+.........-..+.. .|+++.=.. .+.-|+.+++.+. .+.|+|.. .
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 83 (132)
T 3crn_A 4 KRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEFFNLALFXIKLPDMEGTELLEKAHKLRPGMKKIMVTG 83 (132)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEEEES
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHhhCCCCcEEEEec
Confidence 45777776655 445666666666554433221111133333 477765432 2334666666653 36777654 3
Q ss_pred CCc----ccccccCCCEEEeC--CHHHHHHHHHHHHh
Q 016975 245 HPS----NDFFKQFPNCRTYD--DRNGFVEATLKALA 275 (379)
Q Consensus 245 ~g~----~e~i~~~~~g~~~~--~~~~l~~~i~~~l~ 275 (379)
... .+.+..+..+++.. +.+++.++|..++.
T Consensus 84 ~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 120 (132)
T 3crn_A 84 YASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLD 120 (132)
T ss_dssp CCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHh
Confidence 333 23455667787776 99999999988764
No 211
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=34.84 E-value=31 Score=28.82 Aligned_cols=63 Identities=14% Similarity=0.001 Sum_probs=43.2
Q ss_pred CcEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 172 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 172 ~~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
++++.+-|-.+. .+.+.+.++.+|..+ . ++ ...+..+|.+...- ..+.+.|++.|+|||..+.
T Consensus 16 ~~~i~~SG~~~~~~~~l~~~i~~lGg~v--~---~~----~~~~THLI~~~~~r--T~K~l~A~~~g~~IVs~~W 79 (219)
T 3sqd_A 16 TPFVLFTGFEPVQVQQYIKKLYILGGEV--A---ES----AQKCTHLIASKVTR--TVKFLTAISVVKHIVTPEW 79 (219)
T ss_dssp CCEEEECSCCHHHHHHHHHHHHHTTCEE--C---SS----GGGCSEEECSSCCC--CHHHHHHTTTCSEEECHHH
T ss_pred CeEEEEeCCChHHHHHHHHHHHHCCCEE--e---CC----CCCceEEEECCCCC--CHHHHHHHHcCCCEecHHH
Confidence 566777774333 456788888887653 1 11 26788888875321 2579999999999999775
No 212
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=34.75 E-value=1.7e+02 Score=25.98 Aligned_cols=93 Identities=14% Similarity=0.082 Sum_probs=57.3
Q ss_pred cceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHh--hcCEEE
Q 016975 141 AKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFL 218 (379)
Q Consensus 141 ~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~--~~dv~v 218 (379)
+..+.++|--.-.+ ..+.++... .++++++-+-+ .+.+..++.+++.+. .. ..+.++++. ..|+++
T Consensus 13 ~~rvgiiG~G~~g~---~~~~~l~~~---~~~~~lvav~d-~~~~~~~~~~~~~~~--~~---~~~~~~ll~~~~~D~V~ 80 (354)
T 3q2i_A 13 KIRFALVGCGRIAN---NHFGALEKH---ADRAELIDVCD-IDPAALKAAVERTGA--RG---HASLTDMLAQTDADIVI 80 (354)
T ss_dssp CEEEEEECCSTTHH---HHHHHHHHT---TTTEEEEEEEC-SSHHHHHHHHHHHCC--EE---ESCHHHHHHHCCCSEEE
T ss_pred cceEEEEcCcHHHH---HHHHHHHhC---CCCeEEEEEEc-CCHHHHHHHHHHcCC--ce---eCCHHHHhcCCCCCEEE
Confidence 45677777522111 233444432 25676664433 344566666666663 22 345567777 679998
Q ss_pred ecCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 219 NPSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 219 ~ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
..+....-.-.+.+|+..|++|++-..
T Consensus 81 i~tp~~~h~~~~~~al~~gk~v~~EKP 107 (354)
T 3q2i_A 81 LTTPSGLHPTQSIECSEAGFHVMTEKP 107 (354)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEEECSS
T ss_pred ECCCcHHHHHHHHHHHHCCCCEEEeCC
Confidence 877666555567899999999998665
No 213
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=34.52 E-value=1.2e+02 Score=21.39 Aligned_cols=104 Identities=10% Similarity=-0.112 Sum_probs=57.3
Q ss_pred cEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHh--hcCEEEecCCC-CcchhHHHHHHH---cCCeEEecC-
Q 016975 173 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPSTT-DVVCTTTAEALA---MGKIVVCAN- 244 (379)
Q Consensus 173 ~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~--~~dv~v~ps~~-E~~~~~~~EAma---~G~PVI~t~- 244 (379)
.+++++.+.+. ...+....+..+..+.........-..+. ..|+.+.=... +.-|..+++.+. ...|||...
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 83 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTA 83 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEEES
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEEEc
Confidence 35777776555 34456666665655433222111113332 34777753322 334556666553 467776543
Q ss_pred CCcc----cccccCCCEEEeC--CHHHHHHHHHHHHhC
Q 016975 245 HPSN----DFFKQFPNCRTYD--DRNGFVEATLKALAE 276 (379)
Q Consensus 245 ~g~~----e~i~~~~~g~~~~--~~~~l~~~i~~~l~~ 276 (379)
.+.. +.+..+..+++.. +.+++.+++..++..
T Consensus 84 ~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1srr_A 84 YGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLPL 121 (124)
T ss_dssp SCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSCC
T ss_pred cCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhcc
Confidence 3332 2344555666666 999999999887653
No 214
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=34.50 E-value=62 Score=27.26 Aligned_cols=67 Identities=13% Similarity=-0.017 Sum_probs=45.4
Q ss_pred CCcEEEEEcCC-cChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 171 AGLEVDLYGNG-EDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 171 ~~~~l~i~G~g-~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
....+.+-|-. +....+.+.++++|..+. . .. .+-..+.-+|.+... -..+++.|+|+|++||..+.
T Consensus 8 ~~~~~~~Sg~~~~~~~~l~~~i~~LGg~~~--~---~~-~~~~~~THlV~~~~~--RT~K~l~aia~G~wIvs~~w 75 (235)
T 3al2_A 8 KQYIFQLSSLNPQERIDYCHLIEKLGGLVI--E---KQ-CFDPTCTHIVVGHPL--RNEKYLASVAAGKWVLHRSY 75 (235)
T ss_dssp CCCEEEEESCCHHHHHHHHHHHHHTTCEEC--C---SS-SCCTTCCEEEESSCC--CSHHHHHHHHTTCEEECTHH
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHHcCCEEe--c---cC-CCCCCCcEEEECCCC--CCHHHHHHHHcCCcCccHHH
Confidence 35678887743 335678888888876531 1 11 122567788887642 37789999999999999764
No 215
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=34.37 E-value=1.1e+02 Score=26.90 Aligned_cols=73 Identities=10% Similarity=0.059 Sum_probs=48.4
Q ss_pred cCCcEEEEEcCCc---ChHHHHHHHHhcCCeeEEecCCCCHHHHHhh--cCEEEecCCCCcchhHHHHHHHcCCeEEecC
Q 016975 170 LAGLEVDLYGNGE---DFNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPSTTDVVCTTTAEALAMGKIVVCAN 244 (379)
Q Consensus 170 ~~~~~l~i~G~g~---~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~--~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~ 244 (379)
.++++++-+-+.. ..+.+.+..++.+..... ..+.++++.. .|+++..+....-.-.+.+|+..|++|++-.
T Consensus 22 ~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ll~~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EK 98 (337)
T 3ip3_A 22 DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKK---YNNWWEMLEKEKPDILVINTVFSLNGKILLEALERKIHAFVEK 98 (337)
T ss_dssp CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEE---CSSHHHHHHHHCCSEEEECSSHHHHHHHHHHHHHTTCEEEECS
T ss_pred CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcc---cCCHHHHhcCCCCCEEEEeCCcchHHHHHHHHHHCCCcEEEeC
Confidence 4677777555432 345566666666653333 3455677775 6898887765555556889999999999865
Q ss_pred C
Q 016975 245 H 245 (379)
Q Consensus 245 ~ 245 (379)
.
T Consensus 99 P 99 (337)
T 3ip3_A 99 P 99 (337)
T ss_dssp S
T ss_pred C
Confidence 4
No 216
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=34.35 E-value=1.8e+02 Score=23.40 Aligned_cols=105 Identities=10% Similarity=-0.066 Sum_probs=62.0
Q ss_pred CcEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHhh--cCEEEecCC-CCcchhHHHHHHH---cCCeEEecC
Q 016975 172 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPST-TDVVCTTTAEALA---MGKIVVCAN 244 (379)
Q Consensus 172 ~~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~--~dv~v~ps~-~E~~~~~~~EAma---~G~PVI~t~ 244 (379)
..+++|+.+.+. ...+.......+..+.........-..+.. .|+++.-.. .+.-|+.+++.+. .++|||...
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ii~lt 86 (233)
T 1ys7_A 7 SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVLS 86 (233)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEE
Confidence 457888887665 445666666666655433221111133332 477775432 2445667777664 467776543
Q ss_pred C-Cc----ccccccCCCEEEeC--CHHHHHHHHHHHHhC
Q 016975 245 H-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 276 (379)
Q Consensus 245 ~-g~----~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~ 276 (379)
. .. .+.+..+..+++.. +++++..+|..++..
T Consensus 87 ~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 125 (233)
T 1ys7_A 87 ARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRR 125 (233)
T ss_dssp CCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 3 32 33455666777776 999999999888753
No 217
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Probab=34.27 E-value=96 Score=28.88 Aligned_cols=77 Identities=14% Similarity=0.138 Sum_probs=45.5
Q ss_pred CcEEEEEcCCcChHHHHHHHHhcCCeeEEecCC--------------CCHHHHHhhcCEEEecCCCC-cchhHHHHHHHc
Q 016975 172 GLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGR--------------DHADLIFHDYKVFLNPSTTD-VVCTTTAEALAM 236 (379)
Q Consensus 172 ~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~--------------~~~~~~~~~~dv~v~ps~~E-~~~~~~~EAma~ 236 (379)
+-++.|+|-|.--..+-+.++..|.+|.+...- ...++++..+|+++..+... .+.-..++.|.-
T Consensus 211 GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~~~sL~eal~~ADVVilt~gt~~iI~~e~l~~MK~ 290 (436)
T 3h9u_A 211 GKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVLLVEDVVEEAHIFVTTTGNDDIITSEHFPRMRD 290 (436)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEECSSCSCSBCTTTGGGCCT
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCeecCHHHHHhhCCEEEECCCCcCccCHHHHhhcCC
Confidence 456777776666555555566666665554321 13337888899998755332 233345666777
Q ss_pred CCeEEecCCCcc
Q 016975 237 GKIVVCANHPSN 248 (379)
Q Consensus 237 G~PVI~t~~g~~ 248 (379)
|.-+|.+..|..
T Consensus 291 gAIVINvgRg~v 302 (436)
T 3h9u_A 291 DAIVCNIGHFDT 302 (436)
T ss_dssp TEEEEECSSSGG
T ss_pred CcEEEEeCCCCC
Confidence 766666555443
No 218
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=34.20 E-value=2.5e+02 Score=25.03 Aligned_cols=116 Identities=12% Similarity=0.093 Sum_probs=65.2
Q ss_pred cceEEEcCh--h-hhhhhh-ccceeecccCCCCccCccccHH----HhhcCCCCCcceEEEEEecccccCH-HHHHHHHH
Q 016975 94 CHKVIRLSA--A-TQEYAN-SIICNVHGVNPKFLEIGKKKKE----QQQNGTHAFAKGAYYIGKMVWSKGY-KELLELLD 164 (379)
Q Consensus 94 ~d~vi~~S~--~-~~~~~~-~~i~~i~gvd~~~~~~~~~~~~----~~~~~~~~~~~~il~vgrl~~~Kg~-~~li~a~~ 164 (379)
+|.++.=.. . ...+.+ ..+.+|||-+. ...|...... ....+. -....|.|+|-+ .|+ .-++.++.
T Consensus 126 ~D~IviR~~~~~~~~~lA~~~~vPVINag~~-~~HPtQaLaDl~TI~E~~G~-l~glkva~vGD~---~nva~Sl~~~~~ 200 (340)
T 4ep1_A 126 IDGIMIRTFSHADVEELAKESSIPVINGLTD-DHHPCQALADLMTIYEETNT-FKGIKLAYVGDG---NNVCHSLLLASA 200 (340)
T ss_dssp CSEEEEECSCHHHHHHHHHHCSSCEEEEECS-SCCHHHHHHHHHHHHHHHSC-CTTCEEEEESCC---CHHHHHHHHHHH
T ss_pred CCEEEEecCChhHHHHHHHhCCCCEEeCCCC-CCCcHHHHHHHHHHHHHhCC-CCCCEEEEECCC---chhHHHHHHHHH
Confidence 577665542 2 333332 46788898773 4555432221 112222 235689999976 232 33444444
Q ss_pred HhHhhcCCcEEEEEcCCcC--hHH----HHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCC
Q 016975 165 DHQKELAGLEVDLYGNGED--FNQ----IQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPST 222 (379)
Q Consensus 165 ~l~~~~~~~~l~i~G~g~~--~~~----l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~ 222 (379)
.+ ++++.++|.... ... +++.+++.|..+.+. .+.++.+..+||+....+
T Consensus 201 ~~-----G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~v~~~---~d~~eav~~aDVvyt~~w 256 (340)
T 4ep1_A 201 KV-----GMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEIL---HNPELAVNEADFIYTDVW 256 (340)
T ss_dssp HH-----TCEEEEECCTTCCCCHHHHHHHHHHHHHHCCCEEEE---SCHHHHHTTCSEEEECCC
T ss_pred Hc-----CCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEE---CCHHHHhCCCCEEEecCc
Confidence 43 588999985332 222 334445666565553 455678999999887765
No 219
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=34.16 E-value=2.5e+02 Score=24.99 Aligned_cols=119 Identities=10% Similarity=0.076 Sum_probs=66.4
Q ss_pred cceEEEcC--hh-hhhhhh-ccceeecccCCCCccCccccHHH---hhcCC-CCCcceEEEEEecccccCHHHHHHHHHH
Q 016975 94 CHKVIRLS--AA-TQEYAN-SIICNVHGVNPKFLEIGKKKKEQ---QQNGT-HAFAKGAYYIGKMVWSKGYKELLELLDD 165 (379)
Q Consensus 94 ~d~vi~~S--~~-~~~~~~-~~i~~i~gvd~~~~~~~~~~~~~---~~~~~-~~~~~~il~vgrl~~~Kg~~~li~a~~~ 165 (379)
+|.++.=. +. ...+.+ ..+++|||.+ +...|....... .+... .-....|.|+|-. ...=..-++.++..
T Consensus 101 ~D~IviR~~~~~~~~~lA~~s~vPVINa~~-~~~HPtQ~LaDl~Ti~e~~g~~l~gl~va~vGD~-~~~va~Sl~~~~~~ 178 (335)
T 1dxh_A 101 YDAIEYRGFKQEIVEELAKFAGVPVFNGLT-DEYHPTQMLADVLTMREHSDKPLHDISYAYLGDA-RNNMGNSLLLIGAK 178 (335)
T ss_dssp CSEEEEECSCHHHHHHHHHHSSSCEEEEEC-SSCCHHHHHHHHHHHHHTCSSCGGGCEEEEESCC-SSHHHHHHHHHHHH
T ss_pred CCEEEEecCChhHHHHHHHhCCCCEEcCCC-CCCCcHHHHHHHHHHHHHcCCCcCCeEEEEecCC-ccchHHHHHHHHHH
Confidence 47766654 22 333332 3578889876 555554432221 12222 2234679999986 22112233444433
Q ss_pred hHhhcCCcEEEEEcCCcC--hHH----HHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCC
Q 016975 166 HQKELAGLEVDLYGNGED--FNQ----IQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPST 222 (379)
Q Consensus 166 l~~~~~~~~l~i~G~g~~--~~~----l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~ 222 (379)
. ++++.++|.... ..+ +++.+++.|..+.+. .+.++.+..+|++....+
T Consensus 179 ----~-G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~---~d~~eav~~aDvvytd~w 233 (335)
T 1dxh_A 179 ----L-GMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLT---EDPKEAVKGVDFVHTDVW 233 (335)
T ss_dssp ----T-TCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEE---SCHHHHTTTCSEEEECCC
T ss_pred ----c-CCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEE---eCHHHHhCCCCEEEeCCc
Confidence 3 689999995322 122 344455667666555 556678999999887665
No 220
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=34.13 E-value=2.4e+02 Score=24.82 Aligned_cols=117 Identities=12% Similarity=0.103 Sum_probs=65.4
Q ss_pred cceEEEcC--hh-hhhhhh-ccceeecccCCCCccCccccHH----HhhcCCCCCcceEEEEEecccccCHHHHHHHHHH
Q 016975 94 CHKVIRLS--AA-TQEYAN-SIICNVHGVNPKFLEIGKKKKE----QQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDD 165 (379)
Q Consensus 94 ~d~vi~~S--~~-~~~~~~-~~i~~i~gvd~~~~~~~~~~~~----~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~ 165 (379)
+|.++.=. +. ...+.+ ..+.+|||-+. ...|...... ....+.. ....|.|+|-. ..=..-++.++..
T Consensus 102 ~D~iviR~~~~~~~~~lA~~~~vPVINa~~~-~~HPtQaLaDl~Ti~e~~g~l-~gl~va~vGD~--~rva~Sl~~~~~~ 177 (315)
T 1pvv_A 102 VDAIMARVYDHKDVEDLAKYATVPVINGLSD-FSHPCQALADYMTIWEKKGTI-KGVKVVYVGDG--NNVAHSLMIAGTK 177 (315)
T ss_dssp CSEEEEECSSHHHHHHHHHHCSSCEEEEECS-SCCHHHHHHHHHHHHHHHSCC-TTCEEEEESCC--CHHHHHHHHHHHH
T ss_pred CcEEEEecCchHHHHHHHHhCCCCEEcCCCC-CCCcHHHHHHHHHHHHHhCCc-CCcEEEEECCC--cchHHHHHHHHHH
Confidence 57766654 22 333332 35788898774 4555432221 1122222 24579999986 2122334444443
Q ss_pred hHhhcCCcEEEEEcCCcC--hHH----HHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCC
Q 016975 166 HQKELAGLEVDLYGNGED--FNQ----IQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPST 222 (379)
Q Consensus 166 l~~~~~~~~l~i~G~g~~--~~~----l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~ 222 (379)
. ++++.++|.... ..+ +++.+++.|..+.+. .+.++.+..+|++....+
T Consensus 178 ----~-g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~---~d~~eav~~aDvvy~~~w 232 (315)
T 1pvv_A 178 ----L-GADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELL---HDPVKAVKDADVIYTDVW 232 (315)
T ss_dssp ----T-TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEE---SCHHHHTTTCSEEEECCC
T ss_pred ----C-CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEE---eCHHHHhCCCCEEEEcce
Confidence 3 689999995332 222 344455666565554 556678999999988765
No 221
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=34.11 E-value=1.6e+02 Score=23.30 Aligned_cols=101 Identities=11% Similarity=-0.003 Sum_probs=58.8
Q ss_pred cEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHH---HHHhh--cCEEEecC-CCCcchhHHHHHHH---cCCeEEe
Q 016975 173 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHAD---LIFHD--YKVFLNPS-TTDVVCTTTAEALA---MGKIVVC 242 (379)
Q Consensus 173 ~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~---~~~~~--~dv~v~ps-~~E~~~~~~~EAma---~G~PVI~ 242 (379)
.+++|+.+.+. ...+.......+..+... ...+ +.+.. .|+++.=- ..+.-|+.+++.+. .++|||.
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~---~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~ 81 (208)
T 1yio_A 5 PTVFVVDDDMSVREGLRNLLRSAGFEVETF---DCASTFLEHRRPEQHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVF 81 (208)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEE---SSHHHHHHHCCTTSCEEEEEESCCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCceEEEc---CCHHHHHHhhhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 46777776665 455666666666554433 2333 22222 36666432 22445667777664 3677765
Q ss_pred cCC-Cc----ccccccCCCEEEeC--CHHHHHHHHHHHHhC
Q 016975 243 ANH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 276 (379)
Q Consensus 243 t~~-g~----~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~ 276 (379)
-.. +. .+.+..+..+++.. +++++.++|..++..
T Consensus 82 ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 122 (208)
T 1yio_A 82 ITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQL 122 (208)
T ss_dssp EESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhh
Confidence 433 32 23445566677766 999999999887753
No 222
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=33.53 E-value=1.2e+02 Score=25.43 Aligned_cols=99 Identities=13% Similarity=0.037 Sum_probs=51.7
Q ss_pred HHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcC
Q 016975 158 ELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMG 237 (379)
Q Consensus 158 ~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G 237 (379)
.+++++.+.++... ++-++|.+.....+.....-++.++.++...+.++ .--.+.++.+-|
T Consensus 94 Dil~aL~~a~~~~~--kIavVg~~~~~~~~~~i~~ll~~~i~~~~~~~~ee-----------------~~~~i~~l~~~G 154 (225)
T 2pju_A 94 DVLQFLAKAGKLTS--SIGVVTYQETIPALVAFQKTFNLRLDQRSYITEED-----------------ARGQINELKANG 154 (225)
T ss_dssp HHHHHHHHTTCTTS--CEEEEEESSCCHHHHHHHHHHTCCEEEEEESSHHH-----------------HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhCC--cEEEEeCchhhhHHHHHHHHhCCceEEEEeCCHHH-----------------HHHHHHHHHHCC
Confidence 55677777665432 56677766666666666666666666654443333 112344555555
Q ss_pred CeEEecCCCcccccc-cCCCEEEeCCHHHHHHHHHHHHh
Q 016975 238 KIVVCANHPSNDFFK-QFPNCRTYDDRNGFVEATLKALA 275 (379)
Q Consensus 238 ~PVI~t~~g~~e~i~-~~~~g~~~~~~~~l~~~i~~~l~ 275 (379)
+=||.-+.-..+... -+-++++..+.+++.+++.+++.
T Consensus 155 ~~vVVG~~~~~~~A~~~Gl~~vlI~s~eSI~~Ai~eA~~ 193 (225)
T 2pju_A 155 TEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALD 193 (225)
T ss_dssp CCEEEESHHHHHHHHHTTSEEEESSCHHHHHHHHHHHHH
T ss_pred CCEEECCHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHH
Confidence 544443332222221 22334444456667777666543
No 223
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=33.42 E-value=83 Score=22.16 Aligned_cols=103 Identities=9% Similarity=-0.020 Sum_probs=55.7
Q ss_pred EEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHhh--cCEEEecCCC-CcchhHHHHHH---HcCCeEEecCC-
Q 016975 174 EVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPSTT-DVVCTTTAEAL---AMGKIVVCANH- 245 (379)
Q Consensus 174 ~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~--~dv~v~ps~~-E~~~~~~~EAm---a~G~PVI~t~~- 245 (379)
+++++.+.+. ...+.......+..+.........-..+.. .|+++.-... +.-|..+++.+ ..+.|+|....
T Consensus 5 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~~s~~ 84 (124)
T 1dc7_A 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAH 84 (124)
T ss_dssp CCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSSCCCSCEEECSCSSHHHHCSTHHHHHHHCTTSCCCCBCCS
T ss_pred EEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCCEEEEeeecCCCCHHHHHHHHHhhCCCCCEEEEecC
Confidence 4667776665 455666666666555433322222233332 3777654332 22344444444 34567665433
Q ss_pred Cc----ccccccCCCEEEeC--CHHHHHHHHHHHHhC
Q 016975 246 PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 276 (379)
Q Consensus 246 g~----~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~ 276 (379)
+. .+.+..+..+++.. +.+++..++..++..
T Consensus 85 ~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 121 (124)
T 1dc7_A 85 SDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 (124)
T ss_dssp TTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHHh
Confidence 32 22344455556655 999999999887754
No 224
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=33.17 E-value=1.2e+02 Score=21.00 Aligned_cols=101 Identities=9% Similarity=0.070 Sum_probs=55.4
Q ss_pred EEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHhh--cCEEEecCC-CCcchhHHHHHHH---cCCeEEe-cCC
Q 016975 174 EVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPST-TDVVCTTTAEALA---MGKIVVC-ANH 245 (379)
Q Consensus 174 ~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~--~dv~v~ps~-~E~~~~~~~EAma---~G~PVI~-t~~ 245 (379)
+++++.+.+. ...+.....+.+..+.........-+.+.. .|+++.=.. .+.-|..+++.+. ...|+|. |..
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 82 (116)
T 3a10_A 3 RILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAY 82 (116)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESC
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECC
Confidence 4667776554 445666666666555433321111133333 477665332 2344666666653 3566654 333
Q ss_pred Cc--ccccccCCCEEEeC--CHHHHHHHHHHHH
Q 016975 246 PS--NDFFKQFPNCRTYD--DRNGFVEATLKAL 274 (379)
Q Consensus 246 g~--~e~i~~~~~g~~~~--~~~~l~~~i~~~l 274 (379)
+. .+....+..+++.. +.+++..++..++
T Consensus 83 ~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 83 SHYRSDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp GGGGGCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred cchHHHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 22 33444556677766 8999999988764
No 225
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=33.15 E-value=51 Score=29.27 Aligned_cols=86 Identities=10% Similarity=-0.004 Sum_probs=51.1
Q ss_pred cceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhh---cCEE
Q 016975 141 AKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHD---YKVF 217 (379)
Q Consensus 141 ~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~---~dv~ 217 (379)
+..+..+|--.-. ....++++.. .++++++-+-+.... +.+ +.. ..+.++++.. .|++
T Consensus 25 ~~rvgiiG~G~ig--~~~~~~~l~~----~~~~~lvav~d~~~~--------~~g--~~~---~~~~~~ll~~~~~vD~V 85 (330)
T 4ew6_A 25 PINLAIVGVGKIV--RDQHLPSIAK----NANFKLVATASRHGT--------VEG--VNS---YTTIEAMLDAEPSIDAV 85 (330)
T ss_dssp CEEEEEECCSHHH--HHTHHHHHHH----CTTEEEEEEECSSCC--------CTT--SEE---ESSHHHHHHHCTTCCEE
T ss_pred CceEEEEecCHHH--HHHHHHHHHh----CCCeEEEEEEeCChh--------hcC--CCc---cCCHHHHHhCCCCCCEE
Confidence 3567777742111 1123445443 466766655443321 122 222 2455578776 7999
Q ss_pred EecCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 218 LNPSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 218 v~ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
+..+....-.-.+..|+..|++|++-..
T Consensus 86 ~i~tp~~~H~~~~~~al~aGkhVl~EKP 113 (330)
T 4ew6_A 86 SLCMPPQYRYEAAYKALVAGKHVFLEKP 113 (330)
T ss_dssp EECSCHHHHHHHHHHHHHTTCEEEECSS
T ss_pred EEeCCcHHHHHHHHHHHHcCCcEEEeCC
Confidence 8887765555668899999999998665
No 226
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=33.14 E-value=97 Score=28.18 Aligned_cols=63 Identities=6% Similarity=-0.187 Sum_probs=34.2
Q ss_pred hcCEEEecCCCCcchhHHHH-HHHcCCeEEecCCCcccccc-cCCCEEEeCCHHHHHHHHHHHHhCCCC
Q 016975 213 DYKVFLNPSTTDVVCTTTAE-ALAMGKIVVCANHPSNDFFK-QFPNCRTYDDRNGFVEATLKALAEEPA 279 (379)
Q Consensus 213 ~~dv~v~ps~~E~~~~~~~E-Ama~G~PVI~t~~g~~e~i~-~~~~g~~~~~~~~l~~~i~~~l~~~~~ 279 (379)
..|-+|.... .-.+++ ....|+|||.-+....+... .....+..+|.+....+...+++..-.
T Consensus 76 ~vDGiIi~~~----~~~~~~~l~~~~iPvV~i~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~r 140 (412)
T 4fe7_A 76 LGDGVIADFD----DKQIEQALADVDVPIVGVGGSYHLAESYPPVHYIATDNYALVESAFLHLKEKGVN 140 (412)
T ss_dssp CCSEEEEETT----CHHHHHHHTTCCSCEEEEEECCSSGGGSCSSEEEEECHHHHHHHHHHHHHHTTCC
T ss_pred CCCEEEEecC----ChHHHHHHhhCCCCEEEecCCccccccCCCCCEEEeCHHHHHHHHHHHHHHcCCc
Confidence 3466665321 122343 45679999988763322111 122335555777777777777775433
No 227
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}
Probab=33.08 E-value=2.7e+02 Score=25.05 Aligned_cols=118 Identities=13% Similarity=0.034 Sum_probs=64.5
Q ss_pred cceEEEcC--hh-hhhhhh-ccceeecccCCCCccCccccHH----HhhcCCCCCcceEEEEEecccccCHHHHHHHHHH
Q 016975 94 CHKVIRLS--AA-TQEYAN-SIICNVHGVNPKFLEIGKKKKE----QQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDD 165 (379)
Q Consensus 94 ~d~vi~~S--~~-~~~~~~-~~i~~i~gvd~~~~~~~~~~~~----~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~ 165 (379)
+|.++.=. +. ...+.+ ..+.+|||.+ +...|...... ....+. -....|.|+|-. ...=..-++.++..
T Consensus 123 ~D~IviR~~~~~~~~~lA~~s~vPVINa~~-~~~HPtQaLaDl~Ti~E~~g~-l~gl~va~vGD~-~~rva~Sl~~~~~~ 199 (359)
T 2w37_A 123 FDGIEFRGFKQSDAEILARDSGVPVWNGLT-DEWHPTQMLADFMTVKENFGK-LQGLTLTFMGDG-RNNVANSLLVTGAI 199 (359)
T ss_dssp CSEEEEESSCHHHHHHHHHHSSSCEEEEEC-SSCCHHHHHHHHHHHHHHHSC-CTTCEEEEESCT-TSHHHHHHHHHHHH
T ss_pred cCEEEEecCChHHHHHHHHhCCCCEEcCCC-CCCCccHHHHHHHHHHHHhCC-cCCeEEEEECCC-ccchHHHHHHHHHH
Confidence 47766654 22 333332 3578888876 45555432221 112222 224578999986 22112234444443
Q ss_pred hHhhcCCcEEEEEcCCcC--hHH----HHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCC
Q 016975 166 HQKELAGLEVDLYGNGED--FNQ----IQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPST 222 (379)
Q Consensus 166 l~~~~~~~~l~i~G~g~~--~~~----l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~ 222 (379)
. ++++.++|.... ..+ +++.+++.|..+.+. .+.++.+..+||+....+
T Consensus 200 ----l-G~~v~~~~P~~l~p~~~~~~~~~~~a~~~G~~v~~~---~d~~eav~~aDvvytd~w 254 (359)
T 2w37_A 200 ----L-GVNIHIVAPKALFPTEETQNIAKGFAEKSGAKLVIT---DDLDEGLKGSNVVYTDVW 254 (359)
T ss_dssp ----H-TCEEEEECCGGGSCCHHHHHHHHHHHHHHTCCEEEE---SCHHHHHTTCSEEEECCS
T ss_pred ----c-CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEE---eCHHHHhcCCCEEEEccc
Confidence 3 688999985322 122 344455666565554 456678899999887665
No 228
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=33.06 E-value=1.8e+02 Score=24.22 Aligned_cols=43 Identities=12% Similarity=0.006 Sum_probs=25.5
Q ss_pred HHHHHHHHHhcCCcccceeecccCCCCCchHHHHHHhCCCCCC
Q 016975 333 EASAYVHFLASGFETSRRAFGAIPGSLHPDEELCKELGLVTPM 375 (379)
Q Consensus 333 ~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 375 (379)
.+...+..++...+....+|+.......-..+.+++.|+..|+
T Consensus 166 ~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~ 208 (276)
T 2h0a_A 166 GGRLALRHFLEKASPPLNVFAGADQVALGVLEEAVRLGLTPGR 208 (276)
T ss_dssp HHHHHHHHHHTTCCSSEEEECSSHHHHHHHHHHHHTTSCTTTT
T ss_pred HHHHHHHHHHhCCCCCCEEEECCcHHHHHHHHHHHHcCCCCCC
Confidence 4455556666655445666654333333456778889987663
No 229
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=33.06 E-value=1.3e+02 Score=26.48 Aligned_cols=92 Identities=14% Similarity=0.056 Sum_probs=51.6
Q ss_pred ceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHh--hcCEEEe
Q 016975 142 KGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLN 219 (379)
Q Consensus 142 ~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~--~~dv~v~ 219 (379)
..+..+|--.-. ..+++++.. .++++++-+-+... +..++.+++.+.. ....+.++++. ..|+++.
T Consensus 6 ~rigiiG~G~ig---~~~~~~l~~----~~~~~~~av~d~~~-~~~~~~a~~~~~~----~~~~~~~~ll~~~~~D~V~i 73 (329)
T 3evn_A 6 VRYGVVSTAKVA---PRFIEGVRL----AGNGEVVAVSSRTL-ESAQAFANKYHLP----KAYDKLEDMLADESIDVIYV 73 (329)
T ss_dssp EEEEEEBCCTTH---HHHHHHHHH----HCSEEEEEEECSCS-STTCC---CCCCS----CEESCHHHHHTCTTCCEEEE
T ss_pred eEEEEEechHHH---HHHHHHHHh----CCCcEEEEEEcCCH-HHHHHHHHHcCCC----cccCCHHHHhcCCCCCEEEE
Confidence 456666642111 124455543 35666664443222 2223334443321 11345567887 6799988
Q ss_pred cCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 220 PSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 220 ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
.+....-.-.+.+|+..|++|++-..
T Consensus 74 ~tp~~~h~~~~~~al~aGk~Vl~EKP 99 (329)
T 3evn_A 74 ATINQDHYKVAKAALLAGKHVLVEKP 99 (329)
T ss_dssp CSCGGGHHHHHHHHHHTTCEEEEESS
T ss_pred CCCcHHHHHHHHHHHHCCCeEEEccC
Confidence 87766555667899999999998665
No 230
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=33.01 E-value=2.5e+02 Score=25.56 Aligned_cols=73 Identities=11% Similarity=0.018 Sum_probs=48.1
Q ss_pred cCCcEEEE-EcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhh-------cCEEEecCCCCcchhHHHHHHHcCCeEE
Q 016975 170 LAGLEVDL-YGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHD-------YKVFLNPSTTDVVCTTTAEALAMGKIVV 241 (379)
Q Consensus 170 ~~~~~l~i-~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~-------~dv~v~ps~~E~~~~~~~EAma~G~PVI 241 (379)
.++++++- + ...+.+..++.+++.+... .....+.++++.. .|+++..+....-.-.+.+|+..|++|+
T Consensus 62 ~~~~~lva~v-~d~~~~~a~~~a~~~g~~~--~~~~~~~~~ll~~~~~~~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl 138 (417)
T 3v5n_A 62 DDHYELVAGA-LSSTPEKAEASGRELGLDP--SRVYSDFKEMAIREAKLKNGIEAVAIVTPNHVHYAAAKEFLKRGIHVI 138 (417)
T ss_dssp TSCEEEEEEE-CCSSHHHHHHHHHHHTCCG--GGBCSCHHHHHHHHHHCTTCCSEEEECSCTTSHHHHHHHHHTTTCEEE
T ss_pred CCCcEEEEEE-eCCCHHHHHHHHHHcCCCc--ccccCCHHHHHhcccccCCCCcEEEECCCcHHHHHHHHHHHhCCCeEE
Confidence 35666652 2 2344566677777766420 0123455678877 7999888776665666889999999999
Q ss_pred ecCC
Q 016975 242 CANH 245 (379)
Q Consensus 242 ~t~~ 245 (379)
|-..
T Consensus 139 ~EKP 142 (417)
T 3v5n_A 139 CDKP 142 (417)
T ss_dssp EESS
T ss_pred EECC
Confidence 8665
No 231
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}
Probab=32.95 E-value=2.4e+02 Score=25.52 Aligned_cols=73 Identities=15% Similarity=0.040 Sum_probs=47.3
Q ss_pred CCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhh-------cCEEEecCCCCcchhHHHHHHHcCCeEEec
Q 016975 171 AGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHD-------YKVFLNPSTTDVVCTTTAEALAMGKIVVCA 243 (379)
Q Consensus 171 ~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~-------~dv~v~ps~~E~~~~~~~EAma~G~PVI~t 243 (379)
++++++-+=...+.+..++.+++.+... .....+.++++.. .|+++..+....-.-.+.+|+..|++|+|=
T Consensus 38 ~~~~lva~v~d~~~~~a~~~a~~~g~~~--~~~~~~~~~ll~~~~~~~~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~E 115 (398)
T 3dty_A 38 NTFVLVAGAFDIDPIRGSAFGEQLGVDS--ERCYADYLSMFEQEARRADGIQAVSIATPNGTHYSITKAALEAGLHVVCE 115 (398)
T ss_dssp GSEEEEEEECCSSHHHHHHHHHHTTCCG--GGBCSSHHHHHHHHTTCTTCCSEEEEESCGGGHHHHHHHHHHTTCEEEEC
T ss_pred CCeEEEEEEeCCCHHHHHHHHHHhCCCc--ceeeCCHHHHHhcccccCCCCCEEEECCCcHHHHHHHHHHHHCCCeEEEe
Confidence 4565553113345566677777766420 0123455678876 799988777666566688999999999984
Q ss_pred CC
Q 016975 244 NH 245 (379)
Q Consensus 244 ~~ 245 (379)
..
T Consensus 116 KP 117 (398)
T 3dty_A 116 KP 117 (398)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 232
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=32.84 E-value=1.3e+02 Score=21.14 Aligned_cols=103 Identities=10% Similarity=-0.042 Sum_probs=58.4
Q ss_pred cEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHhh--cCEEEecCC-CCcchhHHHHHHH--cCCeEEec-CC
Q 016975 173 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPST-TDVVCTTTAEALA--MGKIVVCA-NH 245 (379)
Q Consensus 173 ~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~--~dv~v~ps~-~E~~~~~~~EAma--~G~PVI~t-~~ 245 (379)
.+++|+.+.+. ...+.......+..+...........++.. .|+++.-.. .+.-|+.+++.+. ...|+|.. ..
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~s~~ 82 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLMLTRALRERSTVGIILVTGR 82 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEEESS
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhcCCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEECC
Confidence 35667766554 445666666666555433321111133333 477765332 2345666777664 35676654 33
Q ss_pred Cc----ccccccCCCEEEeC--CHHHHHHHHHHHHh
Q 016975 246 PS----NDFFKQFPNCRTYD--DRNGFVEATLKALA 275 (379)
Q Consensus 246 g~----~e~i~~~~~g~~~~--~~~~l~~~i~~~l~ 275 (379)
+. .+.+..+..+++.. +.+++..++..++.
T Consensus 83 ~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 118 (122)
T 1zgz_A 83 SDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLW 118 (122)
T ss_dssp CCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHH
Confidence 33 22345566777766 99999999988764
No 233
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=32.70 E-value=1.9e+02 Score=23.12 Aligned_cols=104 Identities=11% Similarity=0.023 Sum_probs=60.2
Q ss_pred cEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHhh--cCEEEecCC-CCcchhHHHHHHH---cCCeEEecCC
Q 016975 173 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPST-TDVVCTTTAEALA---MGKIVVCANH 245 (379)
Q Consensus 173 ~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~--~dv~v~ps~-~E~~~~~~~EAma---~G~PVI~t~~ 245 (379)
.+++|+.+.+. ...+.......+..+.........-..+.. .|+++.--. .+.-|+.+++.+. ..+|||.-..
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~ 82 (225)
T 1kgs_A 3 VRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHDGWEILKSMRESGVNTPVLMLTA 82 (225)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEES
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeC
Confidence 45677776655 445666666666555433221111133333 477765432 2445666776664 3677775443
Q ss_pred -Cc----ccccccCCCEEEeC--CHHHHHHHHHHHHhC
Q 016975 246 -PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 276 (379)
Q Consensus 246 -g~----~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~ 276 (379)
.. .+.+..+..+++.. +++++.++|..++..
T Consensus 83 ~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 120 (225)
T 1kgs_A 83 LSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRR 120 (225)
T ss_dssp SCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhh
Confidence 33 23445566677776 999999999988764
No 234
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=32.68 E-value=99 Score=26.24 Aligned_cols=88 Identities=11% Similarity=0.023 Sum_probs=57.7
Q ss_pred HHHHHHhcCC-eeEEe--cCCCCHHHHH------hhcCEEEecCC---CCcchhHHHHHHHcCCeEEecCCCcccccccC
Q 016975 187 IQEAAEKLKI-VVRVY--PGRDHADLIF------HDYKVFLNPST---TDVVCTTTAEALAMGKIVVCANHPSNDFFKQF 254 (379)
Q Consensus 187 l~~~~~~~~l-~v~~~--g~~~~~~~~~------~~~dv~v~ps~---~E~~~~~~~EAma~G~PVI~t~~g~~e~i~~~ 254 (379)
...+.++.|. .++|+ ++..+.+++. ...++.+=|+- .|.|.-.+-.++..|+|-|...+= .-+.|.
T Consensus 173 Aiaml~dmG~~SvKffPM~Gl~~leEl~avAkAca~~g~~lEPTGGIdl~Nf~~I~~i~l~aGv~~viPHIY--sSIIDk 250 (275)
T 3m6y_A 173 AIALVRDMGGNSLKYFPMKGLAHEEEYRAVAKACAEEGFALEPTGGIDKENFETIVRIALEANVEQVIPHVY--SSIIDK 250 (275)
T ss_dssp HHHHHHHHTCCEEEECCCTTTTTHHHHHHHHHHHHHHTCEEEEBSSCCTTTHHHHHHHHHHTTCSCBCCEEC--GGGBCT
T ss_pred HHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhHHHHHHHHHHHcCCCeeccccc--ceeccC
Confidence 3344445544 55665 5555555222 12277666752 478888899999999998877662 224455
Q ss_pred CCEEEeC-CHHHHHHHHHHHHhC
Q 016975 255 PNCRTYD-DRNGFVEATLKALAE 276 (379)
Q Consensus 255 ~~g~~~~-~~~~l~~~i~~~l~~ 276 (379)
.+|..-+ |+.++.+.+.+++..
T Consensus 251 ~TG~TrpedV~~ll~~~K~l~~~ 273 (275)
T 3m6y_A 251 ETGNTKVEAVRELLAVVKKLVDQ 273 (275)
T ss_dssp TTCCBCHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHhh
Confidence 6787777 899999998888763
No 235
>1q0q_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase; HET: DXP NDP; 1.90A {Escherichia coli} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1q0l_A* 1q0h_A* 3r0i_A* 1k5h_A 1onn_A 1ono_A 1onp_A* 1jvs_A* 1t1r_A* 1t1s_A* 2egh_A* 3anm_A* 3anl_A* 3ann_A* 3iie_A
Probab=32.56 E-value=2.5e+02 Score=25.66 Aligned_cols=87 Identities=14% Similarity=0.129 Sum_probs=54.6
Q ss_pred cccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHH--hhcCEEEecCCCCcchh-
Q 016975 152 WSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIF--HDYKVFLNPSTTDVVCT- 228 (379)
Q Consensus 152 ~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~--~~~dv~v~ps~~E~~~~- 228 (379)
..+|++.|.+-..++ .| +++.+.+.....+++......+..++++.+.+-..++. ..+|++++.-. ..-|+
T Consensus 43 ag~nv~~L~~q~~~f---~p--~~v~v~d~~~~~~L~~~l~~~~~~~~v~~G~~~l~~~a~~~~~D~Vv~AIv-G~aGL~ 116 (406)
T 1q0q_A 43 AGKNVTRMVEQCLEF---SP--RYAVMDDEASAKLLKTMLQQQGSRTEVLSGQQAACDMAALEDVDQVMAAIV-GAAGLL 116 (406)
T ss_dssp ESSCHHHHHHHHHHH---CC--SEEEESSHHHHHHHHHHHHHTTCCCEEEESHHHHHHHHTCTTCCEEEECCS-SGGGHH
T ss_pred cCCCHHHHHHHHHHh---CC--CEEEEcCHHHHHHHHHHhhcCCCCcEEEeCHHHHHHHhcCCCCCEEEEccc-cHhHHH
Confidence 378999998888776 34 35666665555666655421244455553332222443 34688877643 33444
Q ss_pred HHHHHHHcCCeEEecC
Q 016975 229 TTAEALAMGKIVVCAN 244 (379)
Q Consensus 229 ~~~EAma~G~PVI~t~ 244 (379)
++++|+.+|+-+--.+
T Consensus 117 PTlaAi~aGK~iaLAN 132 (406)
T 1q0q_A 117 PTLAAIRAGKTILLAN 132 (406)
T ss_dssp HHHHHHHTTCEEEECC
T ss_pred HHHHHHHCCCeEEEec
Confidence 5899999999998887
No 236
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}
Probab=32.42 E-value=2.1e+02 Score=24.93 Aligned_cols=69 Identities=19% Similarity=0.158 Sum_probs=44.4
Q ss_pred CCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHh--hcCEEEecCCCCcchhHHHHHHHcCCeEEecC
Q 016975 171 AGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPSTTDVVCTTTAEALAMGKIVVCAN 244 (379)
Q Consensus 171 ~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~--~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~ 244 (379)
++++++-+-+ .+.+..++.+++.+.. ....+.++++. ..|+++..+......-.+.+|+..|++|++-.
T Consensus 23 ~~~~~vav~d-~~~~~~~~~~~~~g~~----~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al~~Gk~v~~ek 93 (332)
T 2glx_A 23 TGGEVVSMMS-TSAERGAAYATENGIG----KSVTSVEELVGDPDVDAVYVSTTNELHREQTLAAIRAGKHVLCEK 93 (332)
T ss_dssp TTCEEEEEEC-SCHHHHHHHHHHTTCS----CCBSCHHHHHTCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEECS
T ss_pred CCCeEEEEEC-CCHHHHHHHHHHcCCC----cccCCHHHHhcCCCCCEEEEeCChhHhHHHHHHHHHCCCeEEEeC
Confidence 4666653333 3344555666665532 12345557776 48999988776655566778999999999854
No 237
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=32.24 E-value=1.3e+02 Score=20.96 Aligned_cols=103 Identities=8% Similarity=-0.051 Sum_probs=56.0
Q ss_pred EEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHh--hcCEEEecCC-CCcchhHHHHHHH--cCCeEEecCC-C
Q 016975 174 EVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPST-TDVVCTTTAEALA--MGKIVVCANH-P 246 (379)
Q Consensus 174 ~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~--~~dv~v~ps~-~E~~~~~~~EAma--~G~PVI~t~~-g 246 (379)
+++++.+.+. ...+.......+..+.........-..+. ..|+++.=.. .+.-|+.+++.+. ...|+|.... .
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 82 (120)
T 2a9o_A 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLSAKD 82 (120)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHHCCCCEEEEESCC
T ss_pred eEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHhCCCCCEEEEecCC
Confidence 4566666554 34455555555655443221111113332 3477765332 2334555655553 4677665433 3
Q ss_pred cc----cccccCCCEEEeC--CHHHHHHHHHHHHhC
Q 016975 247 SN----DFFKQFPNCRTYD--DRNGFVEATLKALAE 276 (379)
Q Consensus 247 ~~----e~i~~~~~g~~~~--~~~~l~~~i~~~l~~ 276 (379)
.. +.+..+..+++.. +.+++.+++..++..
T Consensus 83 ~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (120)
T 2a9o_A 83 SEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 (120)
T ss_dssp SHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC
T ss_pred chHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHcc
Confidence 32 2345566777766 999999999887754
No 238
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=32.16 E-value=2.6e+02 Score=24.53 Aligned_cols=118 Identities=11% Similarity=0.039 Sum_probs=65.8
Q ss_pred cceEEEcC--hh-hhhhhh-ccceeecccCCCCccCccccHH----HhhcCCCCCcceEEEEEecccccCHHHHHHHHHH
Q 016975 94 CHKVIRLS--AA-TQEYAN-SIICNVHGVNPKFLEIGKKKKE----QQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDD 165 (379)
Q Consensus 94 ~d~vi~~S--~~-~~~~~~-~~i~~i~gvd~~~~~~~~~~~~----~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~ 165 (379)
+|.++.=. +. ...+.+ ..+.+|||-+ +...|...... ....+.. ....|.++|-. ...=..-++.++..
T Consensus 95 ~D~iviR~~~~~~~~~lA~~~~vPVINa~~-~~~HPtQaLaDl~Ti~e~~g~l-~gl~va~vGD~-~~rva~Sl~~~~~~ 171 (307)
T 2i6u_A 95 VDAIVWRTFGQERLDAMASVATVPVINALS-DEFHPCQVLADLQTIAERKGAL-RGLRLSYFGDG-ANNMAHSLLLGGVT 171 (307)
T ss_dssp EEEEEEECSSHHHHHHHHHHCSSCEEESCC-SSCCHHHHHHHHHHHHHHHSCC-TTCEEEEESCT-TSHHHHHHHHHHHH
T ss_pred CCEEEEecCChhHHHHHHhhCCCCEEcCCC-CCcCccHHHHHHHHHHHHhCCc-CCeEEEEECCC-CcCcHHHHHHHHHH
Confidence 47766654 22 223332 3578889876 45555432222 1122222 24579999986 22222334444443
Q ss_pred hHhhcCCcEEEEEcCCcC--hHH----HHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCC
Q 016975 166 HQKELAGLEVDLYGNGED--FNQ----IQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPST 222 (379)
Q Consensus 166 l~~~~~~~~l~i~G~g~~--~~~----l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~ 222 (379)
. ++++.++|.... ..+ +++.+++.|..+.+. .+.++.+..+|++....+
T Consensus 172 ----~-g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~---~d~~eav~~aDvvy~~~w 226 (307)
T 2i6u_A 172 ----A-GIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVT---ADAHAAAAGADVLVTDTW 226 (307)
T ss_dssp ----T-TCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEEE---SCHHHHHTTCSEEEECCS
T ss_pred ----C-CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEE---ECHHHHhcCCCEEEecce
Confidence 3 689999995332 222 344455666555554 556688999999987655
No 239
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=32.04 E-value=40 Score=26.83 Aligned_cols=36 Identities=14% Similarity=-0.135 Sum_probs=26.9
Q ss_pred HHHhhcCEEEe--c--CCCCcchhHHHHHHHcCCeEEecC
Q 016975 209 LIFHDYKVFLN--P--STTDVVCTTTAEALAMGKIVVCAN 244 (379)
Q Consensus 209 ~~~~~~dv~v~--p--s~~E~~~~~~~EAma~G~PVI~t~ 244 (379)
+.++.||++|. . ....|...=+-=|.|.|+|||+-.
T Consensus 77 ~~i~~aD~vVA~ldg~~~D~GTa~EiGyA~algKPVv~l~ 116 (167)
T 1s2d_A 77 TGISNATCGVFLYDMDQLDDGSAFXIGFMRAMHKPVILVP 116 (167)
T ss_dssp HHHHHCSEEEEEEESSSCCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHhCCEEEEECCCCCCCCCceeehhhHhhCCCeEEEEE
Confidence 78899999986 2 233455555666899999999984
No 240
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=31.79 E-value=1.4e+02 Score=21.21 Aligned_cols=101 Identities=7% Similarity=-0.008 Sum_probs=58.8
Q ss_pred cEEEEEcCCcC-hHHHHHHHHhcCC-eeEEecCCCCHH---HHHhh--cCEEEecCCC-CcchhHHHHHHH-----cCCe
Q 016975 173 LEVDLYGNGED-FNQIQEAAEKLKI-VVRVYPGRDHAD---LIFHD--YKVFLNPSTT-DVVCTTTAEALA-----MGKI 239 (379)
Q Consensus 173 ~~l~i~G~g~~-~~~l~~~~~~~~l-~v~~~g~~~~~~---~~~~~--~dv~v~ps~~-E~~~~~~~EAma-----~G~P 239 (379)
.+++++.+.+. ...+....+..+. .+. ...+.+ ..+.. .|+++.=... +.-|..+++.+. ...|
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~~v~---~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~~ 83 (129)
T 1p6q_A 7 IKVLIVDDQVTSRLLLGDALQQLGFKQIT---AAGDGEQGMKIMAQNPHHLVISDFNMPKMDGLGLLQAVRANPATKKAA 83 (129)
T ss_dssp CCEEEECSSHHHHHHHHHHHHTTTCSCEE---CCSSHHHHHHHHHTSCCSEEEECSSSCSSCHHHHHHHHTTCTTSTTCE
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCcEEE---ecCCHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHhcCccccCCC
Confidence 56777776655 4456666665554 322 223333 33333 4777654322 445677777774 3567
Q ss_pred EEecCC-Ccc----cccccCCCEEEeC--CHHHHHHHHHHHHhC
Q 016975 240 VVCANH-PSN----DFFKQFPNCRTYD--DRNGFVEATLKALAE 276 (379)
Q Consensus 240 VI~t~~-g~~----e~i~~~~~g~~~~--~~~~l~~~i~~~l~~ 276 (379)
+|.... +.. +.+..+..+++.. +.+++.+++..++..
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (129)
T 1p6q_A 84 FIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGA 127 (129)
T ss_dssp EEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHHC
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 765433 432 2344566677766 999999999887653
No 241
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=31.76 E-value=2.4e+02 Score=24.67 Aligned_cols=93 Identities=18% Similarity=0.161 Sum_probs=54.7
Q ss_pred cceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHh--hcCEEE
Q 016975 141 AKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFL 218 (379)
Q Consensus 141 ~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~--~~dv~v 218 (379)
+..|..+|--.-.+ ..+.++. +..++++++.+-+ .+.+..++.+++.+.. .++ .+.++++. ..|+++
T Consensus 8 ~~~v~iiG~G~ig~---~~~~~l~---~~~~~~~~vav~d-~~~~~~~~~a~~~g~~-~~~---~~~~~~l~~~~~D~V~ 76 (346)
T 3cea_A 8 PLRAAIIGLGRLGE---RHARHLV---NKIQGVKLVAACA-LDSNQLEWAKNELGVE-TTY---TNYKDMIDTENIDAIF 76 (346)
T ss_dssp CEEEEEECCSTTHH---HHHHHHH---HTCSSEEEEEEEC-SCHHHHHHHHHTTCCS-EEE---SCHHHHHTTSCCSEEE
T ss_pred cceEEEEcCCHHHH---HHHHHHH---hcCCCcEEEEEec-CCHHHHHHHHHHhCCC-ccc---CCHHHHhcCCCCCEEE
Confidence 44677777421111 2333432 1246676654443 3345566666665542 222 34556776 579998
Q ss_pred ecCCCCcchhHHHHHHHcCCeEEecC
Q 016975 219 NPSTTDVVCTTTAEALAMGKIVVCAN 244 (379)
Q Consensus 219 ~ps~~E~~~~~~~EAma~G~PVI~t~ 244 (379)
..+....-.-.+.+|+..|++|++-.
T Consensus 77 i~tp~~~h~~~~~~al~~G~~v~~eK 102 (346)
T 3cea_A 77 IVAPTPFHPEMTIYAMNAGLNVFCEK 102 (346)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEEECS
T ss_pred EeCChHhHHHHHHHHHHCCCEEEEcC
Confidence 88766555556778999999999854
No 242
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Probab=31.68 E-value=1.7e+02 Score=25.41 Aligned_cols=68 Identities=12% Similarity=0.087 Sum_probs=42.6
Q ss_pred cCCcEEE-EEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecC
Q 016975 170 LAGLEVD-LYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCAN 244 (379)
Q Consensus 170 ~~~~~l~-i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~ 244 (379)
.++++++ ++...+ +..++.+++.+.. ..++.+++-...|+++..+....-.-.+.+|+..|++|++-.
T Consensus 28 ~~~~~lvav~d~~~--~~~~~~~~~~g~~-----~~~~~~~l~~~~D~V~i~tp~~~h~~~~~~al~~G~~v~~eK 96 (319)
T 1tlt_A 28 ASDWTLQGAWSPTR--AKALPICESWRIP-----YADSLSSLAASCDAVFVHSSTASHFDVVSTLLNAGVHVCVDK 96 (319)
T ss_dssp CSSEEEEEEECSSC--TTHHHHHHHHTCC-----BCSSHHHHHTTCSEEEECSCTTHHHHHHHHHHHTTCEEEEES
T ss_pred CCCeEEEEEECCCH--HHHHHHHHHcCCC-----ccCcHHHhhcCCCEEEEeCCchhHHHHHHHHHHcCCeEEEeC
Confidence 4677776 443333 2334445554533 234444554567999988776665666778999999999854
No 243
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*
Probab=31.67 E-value=2.2e+02 Score=26.48 Aligned_cols=78 Identities=17% Similarity=0.157 Sum_probs=48.6
Q ss_pred CCcEEEEEcCCcChHHHHHHHHhcCCeeEEecC--------------CCCHHHHHhhcCEEEecCCCC-cchhHHHHHHH
Q 016975 171 AGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPG--------------RDHADLIFHDYKVFLNPSTTD-VVCTTTAEALA 235 (379)
Q Consensus 171 ~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~--------------~~~~~~~~~~~dv~v~ps~~E-~~~~~~~EAma 235 (379)
.+-++.|+|.|+--..+-+.++..|.+|.+... +...++++..+|+++..+-.. .+.-..++.|.
T Consensus 219 ~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~v~~Leeal~~ADIVi~atgt~~lI~~e~l~~MK 298 (435)
T 3gvp_A 219 GGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRLVKLNEVIRQVDIVITCTGNKNVVTREHLDRMK 298 (435)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEECSSCSCSBCHHHHHHSC
T ss_pred cCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCCEeccHHHHHhcCCEEEECCCCcccCCHHHHHhcC
Confidence 345667777666545555555556655544421 122337888999999964332 34456788888
Q ss_pred cCCeEEecCCCcc
Q 016975 236 MGKIVVCANHPSN 248 (379)
Q Consensus 236 ~G~PVI~t~~g~~ 248 (379)
-|.-+|.+..|..
T Consensus 299 ~gailINvgrg~~ 311 (435)
T 3gvp_A 299 NSCIVCNMGHSNT 311 (435)
T ss_dssp TTEEEEECSSTTT
T ss_pred CCcEEEEecCCCc
Confidence 8887777766554
No 244
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=31.56 E-value=2.2e+02 Score=23.61 Aligned_cols=104 Identities=4% Similarity=-0.050 Sum_probs=60.9
Q ss_pred CcEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHhh--cCEEEecCC-CCcchhHHHHHH---HcCCeEEecC
Q 016975 172 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPST-TDVVCTTTAEAL---AMGKIVVCAN 244 (379)
Q Consensus 172 ~~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~--~dv~v~ps~-~E~~~~~~~EAm---a~G~PVI~t~ 244 (379)
+.+++++.+.+. ...+....++.|.++.........-+.+.. .|+++.=-. -+.-|+.+++.+ ...+|||.-.
T Consensus 129 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~~dlvl~D~~mp~~~G~~l~~~ir~~~~~~piI~lt 208 (254)
T 2ayx_A 129 DMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVT 208 (254)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHHSCCSEEEEEESSCSSCCHHHHHHHHHHHCCSCEEEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEEEEE
Confidence 467888887665 455666666777765544332222244443 477764221 123345555554 3467877543
Q ss_pred C-Cc----ccccccCCCEEEeC--CHHHHHHHHHHHHh
Q 016975 245 H-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALA 275 (379)
Q Consensus 245 ~-g~----~e~i~~~~~g~~~~--~~~~l~~~i~~~l~ 275 (379)
. .. .+.+..+-++++.. +.++|.++|..++.
T Consensus 209 ~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 246 (254)
T 2ayx_A 209 ANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAE 246 (254)
T ss_dssp SSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHH
Confidence 3 32 23445666777777 99999999988765
No 245
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=31.39 E-value=1.6e+02 Score=21.77 Aligned_cols=103 Identities=9% Similarity=-0.018 Sum_probs=59.8
Q ss_pred CcEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHH---HHHh---------hcCEEEecCCC-CcchhHHHHHHHc-
Q 016975 172 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHAD---LIFH---------DYKVFLNPSTT-DVVCTTTAEALAM- 236 (379)
Q Consensus 172 ~~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~---~~~~---------~~dv~v~ps~~-E~~~~~~~EAma~- 236 (379)
..+++|+.+.+. ...++...+..+....+. ...+.+ ..+. ..|+++.=-.. +.-|..+++.+..
T Consensus 8 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~-~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~~ 86 (149)
T 1i3c_A 8 PKVILLVEDSKADSRLVQEVLKTSTIDHELI-ILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQN 86 (149)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHSCCSCEEEE-EECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHC
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCCccEE-EeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHhC
Confidence 467888887665 445666666655422222 222222 4444 35877754332 3456677777643
Q ss_pred ----CCeEEec-CCCc----ccccccCCCEEEeC--CHHHHHHHHHHHHh
Q 016975 237 ----GKIVVCA-NHPS----NDFFKQFPNCRTYD--DRNGFVEATLKALA 275 (379)
Q Consensus 237 ----G~PVI~t-~~g~----~e~i~~~~~g~~~~--~~~~l~~~i~~~l~ 275 (379)
.+|||.- .... .+.+..+..+++.. +.+++.++|..++.
T Consensus 87 ~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 136 (149)
T 1i3c_A 87 PDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIES 136 (149)
T ss_dssp TTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred cCcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 4676543 3333 23445666777776 89999999887654
No 246
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=31.34 E-value=1.3e+02 Score=20.93 Aligned_cols=102 Identities=6% Similarity=-0.034 Sum_probs=56.5
Q ss_pred EEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHhh--cCEEEecCC-CCcchhHHHHHHH---cCCeEEec-CC
Q 016975 174 EVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPST-TDVVCTTTAEALA---MGKIVVCA-NH 245 (379)
Q Consensus 174 ~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~--~dv~v~ps~-~E~~~~~~~EAma---~G~PVI~t-~~ 245 (379)
+++++.+.+. ...+.......+..+.........-..+.. .|+++.=-. .+.-|+.+++.+. ...|+|.. ..
T Consensus 2 ~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 81 (121)
T 2pl1_A 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTAR 81 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEEESC
T ss_pred eEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEecC
Confidence 4566665544 444566666666554432221111133333 477765322 2345666777664 35666654 33
Q ss_pred Cc----ccccccCCCEEEeC--CHHHHHHHHHHHHh
Q 016975 246 PS----NDFFKQFPNCRTYD--DRNGFVEATLKALA 275 (379)
Q Consensus 246 g~----~e~i~~~~~g~~~~--~~~~l~~~i~~~l~ 275 (379)
+. .+.+..+..+++.. +.+++..++..++.
T Consensus 82 ~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 117 (121)
T 2pl1_A 82 ESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR 117 (121)
T ss_dssp CCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHH
Confidence 33 23455666777766 99999999988765
No 247
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=31.00 E-value=1.3e+02 Score=24.10 Aligned_cols=100 Identities=9% Similarity=0.097 Sum_probs=58.9
Q ss_pred EEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHH---hhcCEEEecCC-CCcchhHHHHHHH---cCCeEEecCC
Q 016975 174 EVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIF---HDYKVFLNPST-TDVVCTTTAEALA---MGKIVVCANH 245 (379)
Q Consensus 174 ~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~---~~~dv~v~ps~-~E~~~~~~~EAma---~G~PVI~t~~ 245 (379)
+++|+.+.+. ...+.......+ .+.. ..+.++.+ ...|+++.=.. .+.-|+.+++.+. ..+|||.-..
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~~-~v~~---~~~~~~al~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~ 79 (220)
T 1p2f_A 4 KIAVVDDDKNILKKVSEKLQQLG-RVKT---FLTGEDFLNDEEAFHVVVLDVMLPDYSGYEICRMIKETRPETWVILLTL 79 (220)
T ss_dssp EEEEECSCHHHHHHHHHHHTTTE-EEEE---ESSHHHHHHCCSCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEEES
T ss_pred eEEEEeCCHHHHHHHHHHHHhCC-CEEE---ECCHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEEc
Confidence 5677776655 344555555554 3332 22333222 45687775322 2445666666654 4677776443
Q ss_pred -Cc----ccccccCCCEEEeC--CHHHHHHHHHHHHhCC
Q 016975 246 -PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAEE 277 (379)
Q Consensus 246 -g~----~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~ 277 (379)
.. .+.+..+..+++.. +++++.++|..++...
T Consensus 80 ~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 118 (220)
T 1p2f_A 80 LSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLERE 118 (220)
T ss_dssp CCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHccc
Confidence 33 23445666777776 9999999999988753
No 248
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=30.55 E-value=3.4e+02 Score=25.42 Aligned_cols=88 Identities=15% Similarity=0.137 Sum_probs=54.0
Q ss_pred cEEEEEcCC---cChHHHHHHHHhcCCeeE-Ee-cCCCCHH-HHHhhcCEEEecCCCCcchhHHHHHH--HcCCeEEecC
Q 016975 173 LEVDLYGNG---EDFNQIQEAAEKLKIVVR-VY-PGRDHAD-LIFHDYKVFLNPSTTDVVCTTTAEAL--AMGKIVVCAN 244 (379)
Q Consensus 173 ~~l~i~G~g---~~~~~l~~~~~~~~l~v~-~~-g~~~~~~-~~~~~~dv~v~ps~~E~~~~~~~EAm--a~G~PVI~t~ 244 (379)
-.+-|+|.- .+..+++++.++.|+++. .+ |...-++ .-+..|++-|.... .++..+.+.| .+|+|.+...
T Consensus 204 ~~VNiiG~~~~~gd~~eik~lL~~~Gi~v~~~~~gg~~~~el~~~~~A~~niv~~~--~~~~~~A~~Le~~~GiP~i~~~ 281 (483)
T 3pdi_A 204 HDVNLIGEYNIAGEFWHVLPLLDELGLRVLCTLAGDARYREVQTMHRAEVNMMVCS--KAMLNVARKLQETYGTPWFEGS 281 (483)
T ss_dssp EEEEEESCCCBTTGGGGTHHHHHHHTEEEEEEETSSBCHHHHTTGGGCSEEEEESC--CTTHHHHHHHHHHHCCCEEEEC
T ss_pred CeEEEEcCCCChhHHHHHHHHHHHCCCcEEEECCCcCCHHHHHhhhcCCEEEEEch--hhHHHHHHHHHHHhCCCEeecC
Confidence 468888843 346789999999999775 33 4444444 44555666554322 2345566666 5899998653
Q ss_pred C-CcccccccCCCEEEeCCHHHHHHHHHHHHh
Q 016975 245 H-PSNDFFKQFPNCRTYDDRNGFVEATLKALA 275 (379)
Q Consensus 245 ~-g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~ 275 (379)
. |.. +.+++..+|.+++.
T Consensus 282 p~Gi~-------------~T~~~L~~ia~~~g 300 (483)
T 3pdi_A 282 FYGIT-------------DTSQALRDFARLLD 300 (483)
T ss_dssp SSSHH-------------HHHHHHHHHHHHTT
T ss_pred CCCHH-------------HHHHHHHHHHHHhC
Confidence 2 221 34567777777654
No 249
>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} SCOP: c.23.13.1 PDB: 2bt4_A* 1v1j_A* 2cjf_A* 1d0i_A 1gu0_A 1gu1_A*
Probab=30.51 E-value=67 Score=25.14 Aligned_cols=89 Identities=15% Similarity=0.131 Sum_probs=54.1
Q ss_pred HHHHHHHhcCCeeEEecCCCCHH--HHHhh----c-CEEEecCCCCcchhHHHHHHH-cC-CeEEecCCC---ccc----
Q 016975 186 QIQEAAEKLKIVVRVYPGRDHAD--LIFHD----Y-KVFLNPSTTDVVCTTTAEALA-MG-KIVVCANHP---SND---- 249 (379)
Q Consensus 186 ~l~~~~~~~~l~v~~~g~~~~~~--~~~~~----~-dv~v~ps~~E~~~~~~~EAma-~G-~PVI~t~~g---~~e---- 249 (379)
.+++.+.++|..+.++-.=..-+ +.++. + .+.+||.-+--.+.++.+|++ .+ +|+|=-... ..|
T Consensus 39 ~l~~~a~~~g~~v~~~QSN~EGeLId~Ih~a~~~~dgiIINpgA~THtSvAlrDAl~~v~~~P~VEVHiSNi~aRE~FRh 118 (156)
T 1gtz_A 39 LCVKAAAAHGGTVDFRQSNHEGELVDWIHEARLNHCGIVINPAAYSHTSVAILDALNTCDGLPVVEVHISNIHQREPFRH 118 (156)
T ss_dssp HHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHCSEEEEECTTHHHHCHHHHHHHHTSTTCCEEEEESSCGGGSCGGGS
T ss_pred HHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEECchhhccccHHHHHHHHhcCCCCEEEEEecCccccccccc
Confidence 34555666777776663212222 33333 3 467899888888899999985 46 799865542 244
Q ss_pred --ccccCCCEEEeC-CHHHHHHHHHHHH
Q 016975 250 --FFKQFPNCRTYD-DRNGFVEATLKAL 274 (379)
Q Consensus 250 --~i~~~~~g~~~~-~~~~l~~~i~~~l 274 (379)
.+.+--.|.++- -.+...-++..++
T Consensus 119 ~S~~s~~a~GvI~G~G~~gY~lAl~a~~ 146 (156)
T 1gtz_A 119 HSYVSQRADGVVAGCGVQGYVFGVERIA 146 (156)
T ss_dssp CCSGGGTCSEEEESSTTHHHHHHHHHHH
T ss_pred ccccCcceeEEEEecCHHHHHHHHHHHH
Confidence 344456677777 5566555555543
No 250
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}
Probab=30.34 E-value=1.4e+02 Score=24.79 Aligned_cols=43 Identities=12% Similarity=0.163 Sum_probs=31.1
Q ss_pred CCHHHHH-hhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc
Q 016975 205 DHADLIF-HDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS 247 (379)
Q Consensus 205 ~~~~~~~-~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~ 247 (379)
++.++++ ..+|+.+..+..+..--.+.+++..|++||+...+.
T Consensus 41 ~~~~~l~~~~~DvVv~~~~~~~~~~~~~~~l~~G~~vv~~~~~~ 84 (236)
T 2dc1_A 41 RGIDEFLQREMDVAVEAASQQAVKDYAEKILKAGIDLIVLSTGA 84 (236)
T ss_dssp SSHHHHTTSCCSEEEECSCHHHHHHHHHHHHHTTCEEEESCGGG
T ss_pred CCHHHHhcCCCCEEEECCCHHHHHHHHHHHHHCCCcEEEECccc
Confidence 3445677 578999887765544445678999999999987643
No 251
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=30.13 E-value=1.4e+02 Score=20.88 Aligned_cols=103 Identities=7% Similarity=-0.096 Sum_probs=57.5
Q ss_pred cEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHhh--cCEEEecCCC-CcchhHHHHHHH--cCCeEEecCC-
Q 016975 173 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPSTT-DVVCTTTAEALA--MGKIVVCANH- 245 (379)
Q Consensus 173 ~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~--~dv~v~ps~~-E~~~~~~~EAma--~G~PVI~t~~- 245 (379)
.+++++.+.+. ...+....+..+..+.........-..+.. .|+++.=... +.-|..+++.+. ...|+|....
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~ 83 (123)
T 1xhf_A 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQANVALMFLTGR 83 (123)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHHCCCEEEEEESC
T ss_pred ceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCcEEEEECC
Confidence 45777776554 445566666556554332221111133333 4777654322 334555665553 4677765433
Q ss_pred Cc----ccccccCCCEEEeC--CHHHHHHHHHHHHh
Q 016975 246 PS----NDFFKQFPNCRTYD--DRNGFVEATLKALA 275 (379)
Q Consensus 246 g~----~e~i~~~~~g~~~~--~~~~l~~~i~~~l~ 275 (379)
+. .+.+..+..+++.. +.+++..++..++.
T Consensus 84 ~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 119 (123)
T 1xhf_A 84 DNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 (123)
T ss_dssp CSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHH
Confidence 33 22445566777766 99999999988764
No 252
>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}
Probab=30.09 E-value=3e+02 Score=25.81 Aligned_cols=42 Identities=14% Similarity=0.061 Sum_probs=29.3
Q ss_pred HHHHHhhcCEEEecCCCC-cchhHHHHHHHcCCeEEecCCCcc
Q 016975 207 ADLIFHDYKVFLNPSTTD-VVCTTTAEALAMGKIVVCANHPSN 248 (379)
Q Consensus 207 ~~~~~~~~dv~v~ps~~E-~~~~~~~EAma~G~PVI~t~~g~~ 248 (379)
.++++..+|+++..+-.. -+.-..++.|--|.-+|-+..+..
T Consensus 296 LeElL~~ADIVv~atgt~~lI~~e~l~~MK~GAILINvGRgdv 338 (464)
T 3n58_A 296 LDDAASTADIVVTTTGNKDVITIDHMRKMKDMCIVGNIGHFDN 338 (464)
T ss_dssp HHHHGGGCSEEEECCSSSSSBCHHHHHHSCTTEEEEECSSSTT
T ss_pred HHHHHhhCCEEEECCCCccccCHHHHhcCCCCeEEEEcCCCCc
Confidence 347899999998765332 335567888888888887666543
No 253
>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*
Probab=29.62 E-value=92 Score=25.83 Aligned_cols=115 Identities=15% Similarity=0.078 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHH--HHhcCCeeE------------------EecCCCCHHHHHhhc
Q 016975 155 GYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEA--AEKLKIVVR------------------VYPGRDHADLIFHDY 214 (379)
Q Consensus 155 g~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~--~~~~~l~v~------------------~~g~~~~~~~~~~~~ 214 (379)
++..|++.+.+........++.|+|.|.--..+-+. ....+.++. +.+ .++.+++++..
T Consensus 68 ~v~~L~~~~~~~lg~~~~~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~-~~dl~eli~~~ 146 (215)
T 2vt3_A 68 NVDYLLSFFRKTLDQDEMTDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGGVPVYN-LDDLEQHVKDE 146 (215)
T ss_dssp EHHHHHHHHHHHHHHC---CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEETTEEEEE-GGGHHHHCSSC
T ss_pred EhHHHHHHHHHHhCcCCCCEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcCCeeec-hhhHHHHHHhC
Confidence 467777777666544445789999988764444331 122222211 111 22222555555
Q ss_pred CEEEecCCCCcchhHHHHHHHcCCeEEecCCCcccccccCCCEEEeC-CHHHHHHHHHH
Q 016975 215 KVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYD-DRNGFVEATLK 272 (379)
Q Consensus 215 dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~~e~i~~~~~g~~~~-~~~~l~~~i~~ 272 (379)
|+.+.......-.-..-.+..+|+..|..-.+..-.+.+. -.+.+ |...=.+.+..
T Consensus 147 D~ViIAvPs~~~~ei~~~l~~aGi~~Ilnf~P~~l~vp~~--v~v~~vdl~~~l~~l~~ 203 (215)
T 2vt3_A 147 SVAILTVPAVAAQSITDRLVALGIKGILNFTPARLNVPEH--IRIHHIDLAVELQSLVY 203 (215)
T ss_dssp CEEEECSCHHHHHHHHHHHHHTTCCEEEECSSCCCCCCTT--SEEEECCHHHHHHHHHH
T ss_pred CEEEEecCchhHHHHHHHHHHcCCCEEEEcCceeccCCCc--eEEEEeCcHHHHHHHHH
Confidence 8888776554444456677899999887776664444443 23333 54443333333
No 254
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=29.37 E-value=1.6e+02 Score=21.32 Aligned_cols=104 Identities=6% Similarity=-0.015 Sum_probs=59.4
Q ss_pred CcEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHH---HHHhh--cCEEEecCC-CCcchhHHHHHHHc---CCeEE
Q 016975 172 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHAD---LIFHD--YKVFLNPST-TDVVCTTTAEALAM---GKIVV 241 (379)
Q Consensus 172 ~~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~---~~~~~--~dv~v~ps~-~E~~~~~~~EAma~---G~PVI 241 (379)
..+++|+.+.+. ...+.....+.+ ...+.+.....+ ..+.. .|+++.=.. .+.-|+.+++.+.. ..|||
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~~-~~~~v~~~~~~~~al~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 87 (143)
T 2qv0_A 9 KMKVIIVEDEFLAQQELSWLINTHS-QMEIVGSFDDGLDVLKFLQHNKVDAIFLDINIPSLDGVLLAQNISQFAHKPFIV 87 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHCCCSEEEECSSCSSSCHHHHHHHHTTSTTCCEEE
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHccCCCceEE
Confidence 467888887665 445555555542 222222233333 33333 477776433 24457777777753 44554
Q ss_pred -ecCCCc--ccccccCCCEEEeC--CHHHHHHHHHHHHhC
Q 016975 242 -CANHPS--NDFFKQFPNCRTYD--DRNGFVEATLKALAE 276 (379)
Q Consensus 242 -~t~~g~--~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~ 276 (379)
.|.... .+.+..+..+++.. +.+++..+|..++..
T Consensus 88 ~~s~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (143)
T 2qv0_A 88 FITAWKEHAVEAFELEAFDYILKPYQESRIINMLQKLTTA 127 (143)
T ss_dssp EEESCCTTHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 343322 34455666777766 899999999887763
No 255
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=28.99 E-value=2.6e+02 Score=23.50 Aligned_cols=44 Identities=14% Similarity=0.046 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhcCCcccceeecccCCCCCchHHHHHHhCCCCCC
Q 016975 332 EEASAYVHFLASGFETSRRAFGAIPGSLHPDEELCKELGLVTPM 375 (379)
Q Consensus 332 ~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 375 (379)
+.+...+..++...+....+|+.......-..+.+++.|+..|+
T Consensus 180 ~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~G~~vP~ 223 (289)
T 2fep_A 180 DSGLEALQHLMSLDKKPTAILSATDEMALGIIHAAQDQGLSIPE 223 (289)
T ss_dssp HHHHHHHHHHTTSSSCCSEEEESSHHHHHHHHHHHHHTTCCTTT
T ss_pred HHHHHHHHHHHcCCCCCCEEEECCHHHHHHHHHHHHHcCCCCCC
Confidence 34555666667655545667765443333456788899997663
No 256
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=28.99 E-value=2.4e+02 Score=23.18 Aligned_cols=62 Identities=13% Similarity=0.034 Sum_probs=34.4
Q ss_pred hcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCcccccccCCCEEEeCCHHHHHHHHHHHHhCC
Q 016975 213 DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEE 277 (379)
Q Consensus 213 ~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~~~ 277 (379)
..|.+|..+......-.+-++...|+|||..+....+. ....+..++.+....+...+++..
T Consensus 58 ~vdgiIi~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~---~~~~V~~d~~~~~~~a~~~L~~~G 119 (272)
T 3o74_A 58 RCDALFVASCLPPEDDSYRELQDKGLPVIAIDRRLDPA---HFCSVISDDRDASRQLAASLLSSA 119 (272)
T ss_dssp TCSEEEECCCCCSSCCHHHHHHHTTCCEEEESSCCCTT---TCEEEEECHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEecCccccHHHHHHHHHcCCCEEEEccCCCcc---ccCEEEEchHHHHHHHHHHHHHCC
Confidence 45666654433212333456667899999988743211 122344456666666666666643
No 257
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=28.64 E-value=2.6e+02 Score=23.42 Aligned_cols=42 Identities=7% Similarity=-0.019 Sum_probs=25.2
Q ss_pred HHHHHHHHHhcCCcccceeecccCCCCCchHHHHHHhCCCCCC
Q 016975 333 EASAYVHFLASGFETSRRAFGAIPGSLHPDEELCKELGLVTPM 375 (379)
Q Consensus 333 ~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 375 (379)
.+...+..++. .+....+|+.......-..+.+++.|+..|+
T Consensus 172 ~~~~~~~~~l~-~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~ 213 (290)
T 3clk_A 172 SGEQAMKAFGK-NTDLTGIIAASDMTAIGILNQASSFGIEVPK 213 (290)
T ss_dssp HHHHHHHHHCT-TCCCSEEEESSHHHHHHHHHHHHHTTCCTTT
T ss_pred hHHHHHHHHhc-cCCCcEEEECCcHHHHHHHHHHHHcCCCCCC
Confidence 44455556665 4445666665443333456778899997763
No 258
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=28.53 E-value=2.5e+02 Score=23.19 Aligned_cols=106 Identities=8% Similarity=-0.008 Sum_probs=59.4
Q ss_pred CcEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHhh--cCEEEecCC-CCcchhHHHHHHHc--CCeEEecCC
Q 016975 172 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPST-TDVVCTTTAEALAM--GKIVVCANH 245 (379)
Q Consensus 172 ~~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~--~dv~v~ps~-~E~~~~~~~EAma~--G~PVI~t~~ 245 (379)
..+++|+.+.+. ...+.......+..+.........-..+.. .|++|.=-. -+.-|+.+++.+.. .+|||.-..
T Consensus 37 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~DlvllD~~lp~~~G~~l~~~lr~~~~~~iI~lt~ 116 (249)
T 3q9s_A 37 EQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKAREDHPDLILLDLGLPDFDGGDVVQRLRKNSALPIIVLTA 116 (249)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEEECCSCHHHHHHHHHHHHTTCCCCEEEEES
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHcCCCCCEEEEEC
Confidence 356777776554 344555555555443322221111123322 377665433 24456666666653 456665433
Q ss_pred -Cc----ccccccCCCEEEeC--CHHHHHHHHHHHHhCC
Q 016975 246 -PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAEE 277 (379)
Q Consensus 246 -g~----~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~ 277 (379)
.. .+.+..+..+++.. ++++|.++|..++...
T Consensus 117 ~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~~ 155 (249)
T 3q9s_A 117 RDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQR 155 (249)
T ss_dssp CCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhhc
Confidence 33 23455667787777 9999999999988754
No 259
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=28.32 E-value=95 Score=22.55 Aligned_cols=77 Identities=17% Similarity=0.183 Sum_probs=48.3
Q ss_pred hHHHHHHHHhcCCeeEEe--cCCC---CH-HHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCcccccccCCCE
Q 016975 184 FNQIQEAAEKLKIVVRVY--PGRD---HA-DLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNC 257 (379)
Q Consensus 184 ~~~l~~~~~~~~l~v~~~--g~~~---~~-~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~~e~i~~~~~g 257 (379)
.+.|++.++++|.++.+. |..- .. ++-+..+|++|+.+..+--. .|-. .|+||+-+.... .+
T Consensus 22 AeaLekaA~~~G~~ikVEtqgs~g~~n~Lt~~~I~~AD~VIia~d~~v~~---~~RF-~gk~v~~~~v~~--~i------ 89 (106)
T 2m1z_A 22 AQALKKGAKKMGNLIKVETQGATGIENELTEKDVNIGEVVIFAVDTKVRN---KERF-DGKVVLEVPVSA--PI------ 89 (106)
T ss_dssp HHHHHHHHHHHTCEEEEEEEETTEESSCCCHHHHHHCSEEEEEESSCCST---HHHH-TTSEEEEECTTH--HH------
T ss_pred HHHHHHHHHHCCCEEEEEEecCccccCCCCHHHHhhCCEEEEeccccccc---hhcc-CCCcEEEEcHHH--HH------
Confidence 356888899999977765 5421 11 26688999999887543211 2222 399999877632 22
Q ss_pred EEeCCHHHHHHHHHHHHh
Q 016975 258 RTYDDRNGFVEATLKALA 275 (379)
Q Consensus 258 ~~~~~~~~l~~~i~~~l~ 275 (379)
.|++.+.+.+..++.
T Consensus 90 ---~~~~~~l~~a~~~~~ 104 (106)
T 2m1z_A 90 ---KDAEKVINAALALID 104 (106)
T ss_dssp ---HCHHHHHHHHHHHHT
T ss_pred ---HCHHHHHHHHHHHHh
Confidence 246666666666554
No 260
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=28.23 E-value=1.6e+02 Score=24.03 Aligned_cols=63 Identities=13% Similarity=0.127 Sum_probs=42.7
Q ss_pred hHHHHHHHHhcCCeeEEecCC-CCHH---HHHhhcCEEEecCCCCcc---------h--hHHHHHHHcCCeEEecCCCc
Q 016975 184 FNQIQEAAEKLKIVVRVYPGR-DHAD---LIFHDYKVFLNPSTTDVV---------C--TTTAEALAMGKIVVCANHPS 247 (379)
Q Consensus 184 ~~~l~~~~~~~~l~v~~~g~~-~~~~---~~~~~~dv~v~ps~~E~~---------~--~~~~EAma~G~PVI~t~~g~ 247 (379)
...+.+..+++|.++.+..-. .+.+ +.+..+|..++|- -+.+ | -.+-|+...|+|++.+-.|+
T Consensus 46 ~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~ad~I~l~G-G~~~~l~~~L~~~gl~~~l~~~~~~G~p~~G~sAGa 123 (206)
T 3l4e_A 46 VEAGKKALESLGLLVEELDIATESLGEITTKLRKNDFIYVTG-GNTFFLLQELKRTGADKLILEEIAAGKLYIGESAGA 123 (206)
T ss_dssp HHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHHSSEEEECC-SCHHHHHHHHHHHTHHHHHHHHHHTTCEEEEETHHH
T ss_pred HHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHhCCEEEECC-CCHHHHHHHHHHCChHHHHHHHHHcCCeEEEECHHH
Confidence 345666777888877665211 2222 6789999999986 3332 2 24778888999999988665
No 261
>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1
Probab=28.19 E-value=2.7e+02 Score=24.59 Aligned_cols=79 Identities=9% Similarity=0.058 Sum_probs=46.6
Q ss_pred HHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecC--------------C-CCHHHHHhhcCEEEecCCC
Q 016975 159 LLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPG--------------R-DHADLIFHDYKVFLNPSTT 223 (379)
Q Consensus 159 li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~--------------~-~~~~~~~~~~dv~v~ps~~ 223 (379)
+++++.. .|+++++-+.+.. .+.....++..+.. .+|. + .+.++++...|+++..+-.
T Consensus 17 ~~r~l~~----~~~~elvav~d~~-~~~~~~~~~~~g~~--~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vDvV~~aTp~ 89 (334)
T 2czc_A 17 VAYAVTK----QDDMELIGITKTK-PDFEAYRAKELGIP--VYAASEEFIPRFEKEGFEVAGTLNDLLEKVDIIVDATPG 89 (334)
T ss_dssp HHHHHHT----CTTEEEEEEEESS-CSHHHHHHHHTTCC--EEESSGGGHHHHHHHTCCCSCBHHHHHTTCSEEEECCST
T ss_pred HHHHHhc----CCCCEEEEEEcCC-HHHHHHHHHhcCcc--ccccccccceeccCCceEEcCcHHHhccCCCEEEECCCc
Confidence 4555533 4778877666543 34444555555432 2221 1 2344777788998887654
Q ss_pred Cc-chhHHHHHHHcCCeEEecCC
Q 016975 224 DV-VCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 224 E~-~~~~~~EAma~G~PVI~t~~ 245 (379)
.. +.. ...++..|++||++..
T Consensus 90 ~~h~~~-a~~~l~aGk~Vi~sap 111 (334)
T 2czc_A 90 GIGAKN-KPLYEKAGVKAIFQGG 111 (334)
T ss_dssp THHHHH-HHHHHHHTCEEEECTT
T ss_pred cccHHH-HHHHHHcCCceEeecc
Confidence 43 333 3478889999998743
No 262
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=27.93 E-value=3.2e+02 Score=24.27 Aligned_cols=119 Identities=10% Similarity=0.041 Sum_probs=66.8
Q ss_pred cceEEEcC--h-hhhhhhh-ccceeecccCCCCccCccccHHH---h-h-cCCCCCcceEEEEEecccccCHHHHHHHHH
Q 016975 94 CHKVIRLS--A-ATQEYAN-SIICNVHGVNPKFLEIGKKKKEQ---Q-Q-NGTHAFAKGAYYIGKMVWSKGYKELLELLD 164 (379)
Q Consensus 94 ~d~vi~~S--~-~~~~~~~-~~i~~i~gvd~~~~~~~~~~~~~---~-~-~~~~~~~~~il~vgrl~~~Kg~~~li~a~~ 164 (379)
+|.++.=. + ....+.+ ..+++|||.+ +...|....... . . .+..-....|.|+|-. ...=..-++.++.
T Consensus 100 ~D~IviR~~~~~~~~~lA~~~~vPVINa~~-~~~HPtQ~LaDl~Ti~e~~~g~~l~gl~ia~vGD~-~~~va~Sl~~~~~ 177 (333)
T 1duv_G 100 YDGIQYRGYGQEIVETLAEYASVPVWNGLT-NEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDA-RNNMGNSMLEAAA 177 (333)
T ss_dssp CSEEEEECSCHHHHHHHHHHHSSCEEESCC-SSCCHHHHHHHHHHHHHHSTTCCGGGCEEEEESCT-TSHHHHHHHHHHH
T ss_pred CCEEEEEcCCchHHHHHHHhCCCCeEcCCC-CCCCchHHHHHHHHHHHHhcCCCCCCcEEEEECCC-ccchHHHHHHHHH
Confidence 57766654 2 2333332 3578889876 556554432221 1 2 2212234679999986 2212223444444
Q ss_pred HhHhhcCCcEEEEEcCCc---Ch---HHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCC
Q 016975 165 DHQKELAGLEVDLYGNGE---DF---NQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPST 222 (379)
Q Consensus 165 ~l~~~~~~~~l~i~G~g~---~~---~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~ 222 (379)
. . ++++.++|... +. +..++.+++.|..+.+. .+.++.+..+|++....+
T Consensus 178 ~----~-G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~---~d~~eav~~aDvvytd~w 233 (333)
T 1duv_G 178 L----T-GLDLRLVAPQACWPEAALVTECRALAQQNGGNITLT---EDVAKGVEGADFIYTDVW 233 (333)
T ss_dssp H----H-CCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEE---SCHHHHHTTCSEEEECCS
T ss_pred H----c-CCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEE---ECHHHHhCCCCEEEeCCc
Confidence 3 3 68899999532 21 22344555777666655 456678999999988665
No 263
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}
Probab=27.71 E-value=2.4e+02 Score=25.61 Aligned_cols=77 Identities=19% Similarity=0.140 Sum_probs=49.4
Q ss_pred CCcEEEEEcCCcChHHHHHHHHhcCCeeEEecC----------CCCHHHHHhhcCEEEe--cCCCC----c---chhHHH
Q 016975 171 AGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPG----------RDHADLIFHDYKVFLN--PSTTD----V---VCTTTA 231 (379)
Q Consensus 171 ~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~----------~~~~~~~~~~~dv~v~--ps~~E----~---~~~~~~ 231 (379)
.+-++-|+|-|.--..+-+..+..|.++..+.. ....++++..||++++ |...+ + ++-..+
T Consensus 115 ~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~g~~~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li~~~~l 194 (380)
T 2o4c_A 115 AERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAREPDGEFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRL 194 (380)
T ss_dssp GGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHHSTTSCCCCHHHHHHHCSEEEECCCCCSSSSSCCTTSBCHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhhhccCcccCCHHHHHHhCCEEEEeccCccccccchhhhcCHHHH
Confidence 456788888887766666667777777665421 2233488999999886 33333 2 333567
Q ss_pred HHHHcCCeEEecCCCc
Q 016975 232 EALAMGKIVVCANHPS 247 (379)
Q Consensus 232 EAma~G~PVI~t~~g~ 247 (379)
+.|.-|.-+|-+..|.
T Consensus 195 ~~mk~gailIN~sRG~ 210 (380)
T 2o4c_A 195 AALRPGTWLVNASRGA 210 (380)
T ss_dssp HTSCTTEEEEECSCGG
T ss_pred hhCCCCcEEEECCCCc
Confidence 7777777777655543
No 264
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=27.70 E-value=70 Score=23.56 Aligned_cols=66 Identities=11% Similarity=0.084 Sum_probs=44.4
Q ss_pred CCcEEEEEcCCc-ChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecC
Q 016975 171 AGLEVDLYGNGE-DFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCAN 244 (379)
Q Consensus 171 ~~~~l~i~G~g~-~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~ 244 (379)
.+.+|+|.|.-. .+++++++++.+|.. +.+.+. ...|++|.....|.-|-++-.|...|+|||.-+
T Consensus 12 ~G~~~ViTG~l~~~R~e~k~~ie~~Ggk--v~~sVs------kkT~~lV~g~~~e~~gsKl~kA~~lgI~IvsE~ 78 (113)
T 2cok_A 12 SNMKILTLGKLSRNKDEVKAMIEKLGGK--LTGTAN------KASLCISTKKEVEKMNKKMEEVKEANIRVVSED 78 (113)
T ss_dssp SSCEEEECSCCSSCHHHHHHHHHHTTCE--EESCST------TCSEEECCHHHHHHCCHHHHHHHHTTCCEECTH
T ss_pred CCCEEEEEecCCCCHHHHHHHHHHCCCE--EcCccc------cCccEEEECCCCCCCChHHHHHHHCCCcEEeHH
Confidence 467888888633 578888888888765 344443 334555544222446778999999999998744
No 265
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=27.68 E-value=81 Score=25.83 Aligned_cols=62 Identities=11% Similarity=-0.004 Sum_probs=40.3
Q ss_pred CCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 171 AGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 171 ~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
.++++++-|-.+ .++++.++.+|..+ ... +..+..+|.+... -..+++.|+++|+|||..+.
T Consensus 11 ~~~~v~~sG~~~--~~~~~~i~~lGg~~--~~~-------~~~~THlI~~~~~--rt~K~l~a~~~g~~IV~~~W 72 (209)
T 2etx_A 11 TAPKVLFTGVVD--ARGERAVLALGGSL--AGS-------AAEASHLVTDRIR--RTVKFLCALGRGIPILSLDW 72 (209)
T ss_dssp -CCEEEECSSCC--HHHHHHHHHTTCEE--CSS-------TTTCSEEECSSCC--CSHHHHHHHHHTCCEECTHH
T ss_pred CCcEEEEeCCCc--HHHHHHHHHCCCEE--eCC-------CCCceEEEECCCC--CCHHHHHHHhcCCccccHHH
Confidence 467777777543 34577788777532 211 1247777777532 24679999999999998764
No 266
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=27.63 E-value=3.2e+02 Score=24.13 Aligned_cols=92 Identities=8% Similarity=0.079 Sum_probs=56.3
Q ss_pred ceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCC--eeEEecCCCCHHHHHh--hcCEE
Q 016975 142 KGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHADLIFH--DYKVF 217 (379)
Q Consensus 142 ~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l--~v~~~g~~~~~~~~~~--~~dv~ 217 (379)
..+..+|--.-. ..++.++.. .++++++.+-+ .+.+..++.+++.+. ....+ .+.++++. ..|++
T Consensus 7 ~~vgiiG~G~ig---~~~~~~l~~----~~~~~lv~v~d-~~~~~~~~~a~~~~~~~~~~~~---~~~~~ll~~~~~D~V 75 (362)
T 1ydw_A 7 IRIGVMGCADIA---RKVSRAIHL----APNATISGVAS-RSLEKAKAFATANNYPESTKIH---GSYESLLEDPEIDAL 75 (362)
T ss_dssp EEEEEESCCTTH---HHHHHHHHH----CTTEEEEEEEC-SSHHHHHHHHHHTTCCTTCEEE---SSHHHHHHCTTCCEE
T ss_pred eEEEEECchHHH---HHHHHHHhh----CCCcEEEEEEc-CCHHHHHHHHHHhCCCCCCeee---CCHHHHhcCCCCCEE
Confidence 456677642111 134455433 45677664444 344556666776664 12332 34557776 47999
Q ss_pred EecCCCCcchhHHHHHHHcCCeEEecC
Q 016975 218 LNPSTTDVVCTTTAEALAMGKIVVCAN 244 (379)
Q Consensus 218 v~ps~~E~~~~~~~EAma~G~PVI~t~ 244 (379)
+..+....-.-.+.+|+..|++|++-.
T Consensus 76 ~i~tp~~~h~~~~~~al~aGk~V~~EK 102 (362)
T 1ydw_A 76 YVPLPTSLHVEWAIKAAEKGKHILLEK 102 (362)
T ss_dssp EECCCGGGHHHHHHHHHTTTCEEEECS
T ss_pred EEcCChHHHHHHHHHHHHCCCeEEEec
Confidence 988876665666789999999999855
No 267
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=27.47 E-value=1.8e+02 Score=21.20 Aligned_cols=102 Identities=8% Similarity=-0.016 Sum_probs=51.2
Q ss_pred EEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHH---HHHhh--cCEEEecCC-CCcchhHHHHHHH---cCCeEEec
Q 016975 174 EVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHAD---LIFHD--YKVFLNPST-TDVVCTTTAEALA---MGKIVVCA 243 (379)
Q Consensus 174 ~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~---~~~~~--~dv~v~ps~-~E~~~~~~~EAma---~G~PVI~t 243 (379)
+++|+.+.+. ...+.......+....+.+...+.+ ..+.. .|+++.=.. .+.-|+.+++.+. .+.|||..
T Consensus 4 ~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~~~~~dlvllD~~lp~~~g~~l~~~l~~~~~~~~ii~l 83 (141)
T 3cu5_A 4 RILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALKHPPNVLLTDVRMPRMDGIELVDNILKLYPDCSVIFM 83 (141)
T ss_dssp EEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTTSCCSEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEE
Confidence 5677776554 2333433322111222232333333 33332 477775332 2344666666653 46777754
Q ss_pred CC-Cc----ccccccCCCEEEeC--CHHHHHHHHHHHHh
Q 016975 244 NH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALA 275 (379)
Q Consensus 244 ~~-g~----~e~i~~~~~g~~~~--~~~~l~~~i~~~l~ 275 (379)
.. .. .+.+..+..+++.. +.+++.++|..++.
T Consensus 84 s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 122 (141)
T 3cu5_A 84 SGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQ 122 (141)
T ss_dssp CCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHH
T ss_pred eCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHH
Confidence 33 32 23445566677766 99999999988765
No 268
>2c4w_A 3-dehydroquinate dehydratase; 3-dehydroquinase, shikimate pathway, aromatic amino acid biosynthesis, lyase, sulphonamide; HET: GAJ; 1.55A {Helicobacter pylori} PDB: 2c57_A* 2xda_A* 1j2y_A* 2wks_A* 2xb9_A* 2c4v_A* 2xd9_A*
Probab=27.19 E-value=1.1e+02 Score=24.31 Aligned_cols=58 Identities=17% Similarity=0.242 Sum_probs=38.7
Q ss_pred EEEecCCCCcchhHHHHHH-HcCCeEEecCCC---ccccccc------CCCEEEeC-CHHHHHHHHHHH
Q 016975 216 VFLNPSTTDVVCTTTAEAL-AMGKIVVCANHP---SNDFFKQ------FPNCRTYD-DRNGFVEATLKA 273 (379)
Q Consensus 216 v~v~ps~~E~~~~~~~EAm-a~G~PVI~t~~g---~~e~i~~------~~~g~~~~-~~~~l~~~i~~~ 273 (379)
+.+||.-+--++.++.+|+ +.++|+|=-... ..|.+.+ --.|.++- -.....-++..+
T Consensus 82 IIINpgAyTHtSvAlrDAl~~v~~P~VEVHiSNi~aRE~FRh~S~is~~a~GvI~G~G~~gY~lAl~al 150 (176)
T 2c4w_A 82 IIINPGAFSHTSIAIADAIMLAGKPVIEVHLTNIQAREEFRKNSYTGAACGGVIMGFGPLGYNMALMAM 150 (176)
T ss_dssp EEEECGGGGGTCHHHHHHHHTSSSCEEEEESSCGGGSCGGGTCCHHHHHSSEEEESSTTHHHHHHHHHH
T ss_pred EEECcchhccchHHHHHHHHhCCCCEEEEEecCcccccccccccccccceeEEEEecCHHHHHHHHHHH
Confidence 6889988888899999997 568899965552 2554433 34566666 555555555443
No 269
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=26.99 E-value=2.6e+02 Score=24.86 Aligned_cols=69 Identities=20% Similarity=0.149 Sum_probs=44.1
Q ss_pred cCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHh--hcCEEEecCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 170 LAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 170 ~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~--~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
.++++++-+-+.. .+..+ .+++.+.. ...+.++++. ..|+++..+....-.-.+.+|+..|++|++-..
T Consensus 27 ~~~~~l~av~d~~-~~~~~-~a~~~g~~-----~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGkhVl~EKP 97 (359)
T 3e18_A 27 ADNLEVHGVFDIL-AEKRE-AAAQKGLK-----IYESYEAVLADEKVDAVLIATPNDSHKELAISALEAGKHVVCEKP 97 (359)
T ss_dssp STTEEEEEEECSS-HHHHH-HHHTTTCC-----BCSCHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESS
T ss_pred CCCcEEEEEEcCC-HHHHH-HHHhcCCc-----eeCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHHCCCCEEeeCC
Confidence 4677766444432 23333 34444432 2355667887 679998887766555567899999999998654
No 270
>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C*
Probab=26.59 E-value=1.2e+02 Score=24.16 Aligned_cols=132 Identities=14% Similarity=0.150 Sum_probs=78.9
Q ss_pred eEEEEE-ecccccCHHHHHHHHHHhHhhcCCcEEEEEc-CCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEE--
Q 016975 143 GAYYIG-KMVWSKGYKELLELLDDHQKELAGLEVDLYG-NGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFL-- 218 (379)
Q Consensus 143 ~il~vg-rl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G-~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v-- 218 (379)
+|+.-| .+.-.+....+-+..+.|++++.+++|-|-= .|...-.+.=+..+-+..-...-.+++..+-+...|+.+
T Consensus 26 ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPGhmNVLLAEA~VPYd~v~EMdeIN~df~~tDv~lVI 105 (180)
T 1pno_A 26 VIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHPVAGRMPGHMNVLLAEANVPYDEVFELEEINSSFQTADVAFVI 105 (180)
T ss_dssp EEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTTCTTSTTHHHHHHHHTTCCGGGEEEHHHHGGGGGGCSEEEEE
T ss_pred EEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccccccCCCcceEEEEeeCCCHHHHhhHHHHhhhhhhcCEEEEe
Confidence 555566 4556677777778888887777777777742 122223333333333321110001111115577778865
Q ss_pred ------ecCCCC--c---chhHHHHHHHcCCeEEecCC-Cc------ccccccCCCEEEeCCHHHHHHHHHHHH
Q 016975 219 ------NPSTTD--V---VCTTTAEALAMGKIVVCANH-PS------NDFFKQFPNCRTYDDRNGFVEATLKAL 274 (379)
Q Consensus 219 ------~ps~~E--~---~~~~~~EAma~G~PVI~t~~-g~------~e~i~~~~~g~~~~~~~~l~~~i~~~l 274 (379)
||+-.| + +||+++|+.-+..-+|.-+. +. ++++-...+-.++-|..+-.+.|...+
T Consensus 106 GANDvvNpaA~~dp~SpI~GMPvl~v~kAk~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfGDAK~~~~~l~~~l 179 (180)
T 1pno_A 106 GANDVTNPAAKTDPSSPIYGMPILDVEKAGTVLFIKRSMASGYAGVENELFFRNNTMMLFGDAKKMTEQIVQAM 179 (180)
T ss_dssp SCCGGGCGGGTTCTTSTTTTCCCCCGGGSSEEEEEESSSCCCTTCCCCGGGTSTTEEEEESCHHHHHHHHHHHH
T ss_pred ccccccCchhccCCCCCcCCCeeechhhCCEEEEEECCCCCCcCCCcCcceecCCceEEeccHHHHHHHHHHHh
Confidence 676432 2 78999999988877777665 22 456666566688888888887776654
No 271
>3uqz_A DNA processing protein DPRA; SAM and rossmann fold, DNA processing protein A, DNA binding; HET: DNA SO4; 2.70A {Streptococcus pneumoniae}
Probab=26.34 E-value=3.2e+02 Score=23.72 Aligned_cols=39 Identities=10% Similarity=0.135 Sum_probs=21.7
Q ss_pred hHHHHHHHcCCeEEecCC--------CcccccccCCCEEEeCCHHHHHH
Q 016975 228 TTTAEALAMGKIVVCANH--------PSNDFFKQFPNCRTYDDRNGFVE 268 (379)
Q Consensus 228 ~~~~EAma~G~PVI~t~~--------g~~e~i~~~~~g~~~~~~~~l~~ 268 (379)
.+.-.|+..|++|.|-.- |+..++.++ ..++.+++++.+
T Consensus 232 iTA~~Ale~gR~VfavPG~i~~~~s~G~n~LI~~G--A~lv~~~~Dil~ 278 (288)
T 3uqz_A 232 ITCERAMEEGRDVFAIPGSILDGLSDGCHHLIQEG--AKLVTSGQDVLA 278 (288)
T ss_dssp HHHHHHHHTTCEEEECCCCSSSSTTHHHHHHHHTT--CEECSSHHHHHH
T ss_pred HHHHHHHHcCCeEEEECCCCCCccchHHHHHHHCC--CEEECCHHHHHH
Confidence 366677777777766321 224455554 345556665544
No 272
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=26.33 E-value=70 Score=25.21 Aligned_cols=66 Identities=14% Similarity=0.203 Sum_probs=38.1
Q ss_pred HHHhhcCEEEecCCCCcchhH---HHHHHHcCCeEEecCCCc-----ccccccCC-----CEEEeCCHHHHHHHHHHHHh
Q 016975 209 LIFHDYKVFLNPSTTDVVCTT---TAEALAMGKIVVCANHPS-----NDFFKQFP-----NCRTYDDRNGFVEATLKALA 275 (379)
Q Consensus 209 ~~~~~~dv~v~ps~~E~~~~~---~~EAma~G~PVI~t~~g~-----~e~i~~~~-----~g~~~~~~~~l~~~i~~~l~ 275 (379)
+.++.||++|.--. +.-..+ +-=|.+.|+|||+-.... +-.+.... ..+.+ |.+++...|...+.
T Consensus 73 ~~i~~aD~vva~~~-~~d~Gt~~EiGyA~algKPVi~l~~~~~~~~~n~M~~g~~~~~~~~~~~y-~~~el~~~l~~~~~ 150 (165)
T 2khz_A 73 NWLQQADVVVAEVT-QPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIRGAADGSRFQVWDY-AEGEVETMLDRYFE 150 (165)
T ss_dssp HHHHHCSEEEEECS-SCCHHHHHHHHHHHHTCSSEEEEECTTTTCCCCHHHHHTCCSSSEEEEEC-CTTTHHHHHHHHHH
T ss_pred HHHHhCCEEEEECC-CCCCCHHHHHHHHHHCCCEEEEEEcCCCCCcchhhhcccCccceeEEEec-CHHHHHHHHHHHHH
Confidence 78999999876322 333334 444689999999953311 11111111 12334 77777777777766
Q ss_pred C
Q 016975 276 E 276 (379)
Q Consensus 276 ~ 276 (379)
.
T Consensus 151 ~ 151 (165)
T 2khz_A 151 A 151 (165)
T ss_dssp T
T ss_pred h
Confidence 4
No 273
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=26.18 E-value=2e+02 Score=21.31 Aligned_cols=101 Identities=7% Similarity=0.060 Sum_probs=51.4
Q ss_pred CcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHH----HhhcCEEEecCCCCcchhHHHH-H--HHcCCeEEecC
Q 016975 172 GLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLI----FHDYKVFLNPSTTDVVCTTTAE-A--LAMGKIVVCAN 244 (379)
Q Consensus 172 ~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~----~~~~dv~v~ps~~E~~~~~~~E-A--ma~G~PVI~t~ 244 (379)
+..++++-.. .+.++... +.+.. .+.|...+++.+ ...+|++|.....+.-...+.. + +.-++.+|+.-
T Consensus 30 g~~v~vid~~--~~~~~~~~-~~g~~-~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~n~~~~~~a~~~~~~~~iiar~ 105 (140)
T 3fwz_A 30 DIPLVVIETS--RTRVDELR-ERGVR-AVLGNAANEEIMQLAHLECAKWLILTIPNGYEAGEIVASARAKNPDIEIIARA 105 (140)
T ss_dssp TCCEEEEESC--HHHHHHHH-HTTCE-EEESCTTSHHHHHHTTGGGCSEEEECCSCHHHHHHHHHHHHHHCSSSEEEEEE
T ss_pred CCCEEEEECC--HHHHHHHH-HcCCC-EEECCCCCHHHHHhcCcccCCEEEEECCChHHHHHHHHHHHHHCCCCeEEEEE
Confidence 3455665543 34444433 34544 356777776622 4577988877655333322222 2 22356777655
Q ss_pred CCc--ccccccCCCEEEeCCHHHHHHHHHHHHhC
Q 016975 245 HPS--NDFFKQFPNCRTYDDRNGFVEATLKALAE 276 (379)
Q Consensus 245 ~g~--~e~i~~~~~g~~~~~~~~l~~~i~~~l~~ 276 (379)
... .+.+.....-.++.-....+..|.+.+..
T Consensus 106 ~~~~~~~~l~~~G~d~vi~p~~~~a~~i~~~l~~ 139 (140)
T 3fwz_A 106 HYDDEVAYITERGANQVVMGEREIARTMLELLET 139 (140)
T ss_dssp SSHHHHHHHHHTTCSEEEEHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHCCCCEEECchHHHHHHHHHHhhC
Confidence 532 44555443334444444556666655543
No 274
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=26.07 E-value=2e+02 Score=25.25 Aligned_cols=17 Identities=6% Similarity=0.317 Sum_probs=9.6
Q ss_pred hcCCHHHHHHHHHHHHh
Q 016975 287 HQLSWESATERFLQVAE 303 (379)
Q Consensus 287 ~~~sw~~~~~~~~~~~~ 303 (379)
...+|+.-++++...++
T Consensus 211 ~~Idw~~~a~~I~~~iR 227 (314)
T 3tqq_A 211 ALIDWRKSAVEIARQVR 227 (314)
T ss_dssp GBCCTTSBHHHHHHHHH
T ss_pred heecccCCHHHHHHHHh
Confidence 46677655555555444
No 275
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=25.96 E-value=1.8e+02 Score=20.80 Aligned_cols=106 Identities=10% Similarity=0.030 Sum_probs=59.2
Q ss_pred CcEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHhh-cCEEEecCCC-CcchhHHHHHHH--c-----CC-eE
Q 016975 172 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD-YKVFLNPSTT-DVVCTTTAEALA--M-----GK-IV 240 (379)
Q Consensus 172 ~~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~-~dv~v~ps~~-E~~~~~~~EAma--~-----G~-PV 240 (379)
..+++++.+.+. ...+....+..+.++.........-..+.. .|+++.=... +.-|..+++.+. . .. |+
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~~~i 86 (136)
T 1dcf_A 7 GLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHEHKVVFMDVCMPGVENYQIALRIHEKFTKQRHQRPLL 86 (136)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCCTTCSEEEEECCSSTTTTTHHHHHHHHHHC-CCSCCCEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhccCCEEEEeCCCCCCcHHHHHHHHHHhhhhccCCCceE
Confidence 467888877665 445666666666654432221111123222 2777653222 334555666653 1 23 45
Q ss_pred E-ecCCCcc----cccccCCCEEEeC--CHHHHHHHHHHHHhCC
Q 016975 241 V-CANHPSN----DFFKQFPNCRTYD--DRNGFVEATLKALAEE 277 (379)
Q Consensus 241 I-~t~~g~~----e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~ 277 (379)
| .|..+.. +.+..+..+++.. +.+++.+++..++...
T Consensus 87 i~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 130 (136)
T 1dcf_A 87 VALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEPR 130 (136)
T ss_dssp EEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSCC
T ss_pred EEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhchh
Confidence 4 5555432 2445666777776 9999999999987643
No 276
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=25.65 E-value=1.8e+02 Score=20.71 Aligned_cols=106 Identities=7% Similarity=-0.092 Sum_probs=59.3
Q ss_pred cEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHh--hcCEEEecCC-CCcchhHHHHHHH---cCCeEEec-C
Q 016975 173 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPST-TDVVCTTTAEALA---MGKIVVCA-N 244 (379)
Q Consensus 173 ~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~--~~dv~v~ps~-~E~~~~~~~EAma---~G~PVI~t-~ 244 (379)
.+++|+.+.+. ...+.......+..+.........-..+. ..|+++.=.. .+.-|+.+++.+. ...|||.. .
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 83 (136)
T 1mvo_A 4 KKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILMLTA 83 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEEC
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhhcCCCEEEEecCCCCCCHHHHHHHHHcCCCCCCEEEEEC
Confidence 45777776554 34456666666655443322111113333 3477765332 2344666666654 35666543 3
Q ss_pred CCc----ccccccCCCEEEeC--CHHHHHHHHHHHHhCCC
Q 016975 245 HPS----NDFFKQFPNCRTYD--DRNGFVEATLKALAEEP 278 (379)
Q Consensus 245 ~g~----~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~ 278 (379)
.+. .+.+..+..+++.. +.+++..++..++....
T Consensus 84 ~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 123 (136)
T 1mvo_A 84 KDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSE 123 (136)
T ss_dssp TTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHTC-
T ss_pred CCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHhhc
Confidence 332 22445666777766 99999999999887543
No 277
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=25.55 E-value=3.5e+02 Score=23.92 Aligned_cols=118 Identities=11% Similarity=0.094 Sum_probs=65.3
Q ss_pred cceEEEcC--hh-hhhhhh-ccceeecccCCCCccCccccHH----HhhcCCCCCcceEEEEEecccccCHHHHHHHHHH
Q 016975 94 CHKVIRLS--AA-TQEYAN-SIICNVHGVNPKFLEIGKKKKE----QQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDD 165 (379)
Q Consensus 94 ~d~vi~~S--~~-~~~~~~-~~i~~i~gvd~~~~~~~~~~~~----~~~~~~~~~~~~il~vgrl~~~Kg~~~li~a~~~ 165 (379)
+|.++.=. +. ...+.+ ..+.+|||-+. ...|...... ....+.. ....|.|+|-. ...=..-++.++..
T Consensus 114 ~D~iviR~~~~~~~~~lA~~~~vPVINa~~~-~~HPtQaLaDl~Ti~e~~g~l-~gl~va~vGD~-~~rva~Sl~~~~~~ 190 (325)
T 1vlv_A 114 VDAIMFRGYKQETVEKLAEYSGVPVYNGLTD-EFHPTQALADLMTIEENFGRL-KGVKVVFMGDT-RNNVATSLMIACAK 190 (325)
T ss_dssp CSEEEEESSCHHHHHHHHHHHCSCEEESCCS-SCCHHHHHHHHHHHHHHHSCS-TTCEEEEESCT-TSHHHHHHHHHHHH
T ss_pred CCEEEEECCChHHHHHHHHhCCCCEEeCCCC-CCCcHHHHHHHHHHHHHhCCc-CCcEEEEECCC-CcCcHHHHHHHHHH
Confidence 57766654 22 223332 35788898774 4555432221 1122222 24579999984 11112233444433
Q ss_pred hHhhcCCcEEEEEcCCc---Ch---HHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCC
Q 016975 166 HQKELAGLEVDLYGNGE---DF---NQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPST 222 (379)
Q Consensus 166 l~~~~~~~~l~i~G~g~---~~---~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~ 222 (379)
. ++++.++|... +. +.+++.+++.|..+.+. .+.++.+..+|++....+
T Consensus 191 ----~-G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~---~d~~eav~~aDvvyt~~w 245 (325)
T 1vlv_A 191 ----M-GMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFT---SNLEEALAGADVVYTDVW 245 (325)
T ss_dssp ----T-TCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEE---SCHHHHHTTCSEEEECCC
T ss_pred ----C-CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEE---cCHHHHHccCCEEEeccc
Confidence 3 68999999532 21 22344455667665554 556688999999988765
No 278
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=25.47 E-value=2.5e+02 Score=22.26 Aligned_cols=106 Identities=6% Similarity=0.014 Sum_probs=58.1
Q ss_pred CcEEEEEcCCcC-hHHHHHHHHhcCC-eeEEecCCCCHHHHHh---------------hcCEEEecCC-CCcchhHHHHH
Q 016975 172 GLEVDLYGNGED-FNQIQEAAEKLKI-VVRVYPGRDHADLIFH---------------DYKVFLNPST-TDVVCTTTAEA 233 (379)
Q Consensus 172 ~~~l~i~G~g~~-~~~l~~~~~~~~l-~v~~~g~~~~~~~~~~---------------~~dv~v~ps~-~E~~~~~~~EA 233 (379)
+.+++|+.+.+. ...+....++.+. .+.........-+++. ..|++|.=.. -+.-|+.+++.
T Consensus 61 ~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~el~~~ 140 (206)
T 3mm4_A 61 GKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEATRE 140 (206)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHHHHHH
Confidence 456777776554 4445666666665 4443332222223333 3577765432 24456667766
Q ss_pred HH-------cCCeEEecCC-C-cc----cccccCCCEEEeCCHHHHHHHHHHHHhCC
Q 016975 234 LA-------MGKIVVCANH-P-SN----DFFKQFPNCRTYDDRNGFVEATLKALAEE 277 (379)
Q Consensus 234 ma-------~G~PVI~t~~-g-~~----e~i~~~~~g~~~~~~~~l~~~i~~~l~~~ 277 (379)
+. ..+|||.... . .. +.+..+..+++....++|.++|..++...
T Consensus 141 lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~~L~~~i~~~l~~~ 197 (206)
T 3mm4_A 141 IRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLNQLANVIREIESKR 197 (206)
T ss_dssp HHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCTTHHHHHHHHC---
T ss_pred HHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHHHHHHHHHHHHhhh
Confidence 64 4567765443 3 32 24456677788773338999999887653
No 279
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=25.29 E-value=2.4e+02 Score=21.96 Aligned_cols=72 Identities=14% Similarity=0.046 Sum_probs=42.1
Q ss_pred EEEEEcCCcCh---HHHHHHHHhcCCeeEEecCCCCHH----HHHhhcCEEEecCCCCcchh---HHHHHHHcCCeEEec
Q 016975 174 EVDLYGNGEDF---NQIQEAAEKLKIVVRVYPGRDHAD----LIFHDYKVFLNPSTTDVVCT---TTAEALAMGKIVVCA 243 (379)
Q Consensus 174 ~l~i~G~g~~~---~~l~~~~~~~~l~v~~~g~~~~~~----~~~~~~dv~v~ps~~E~~~~---~~~EAma~G~PVI~t 243 (379)
++.++|.|... ..+.......+.++.+...-.+.- ..+..-|++|.-|......- .+-.|-..|.++|+-
T Consensus 41 ~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vi~I 120 (187)
T 3sho_A 41 HVIVVGMGFSAAVAVFLGHGLNSLGIRTTVLTEGGSTLTITLANLRPTDLMIGVSVWRYLRDTVAALAGAAERGVPTMAL 120 (187)
T ss_dssp EEEEECCGGGHHHHHHHHHHHHHTTCCEEEECCCTHHHHHHHHTCCTTEEEEEECCSSCCHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEecCchHHHHHHHHHHHHhcCCCEEEecCCchhHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEE
Confidence 78999987763 334445556777777765211111 23344488888887532221 233455779988875
Q ss_pred CC
Q 016975 244 NH 245 (379)
Q Consensus 244 ~~ 245 (379)
-.
T Consensus 121 T~ 122 (187)
T 3sho_A 121 TD 122 (187)
T ss_dssp ES
T ss_pred eC
Confidence 54
No 280
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=25.25 E-value=2.5e+02 Score=22.38 Aligned_cols=100 Identities=12% Similarity=0.101 Sum_probs=56.9
Q ss_pred EEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHhh--cCEEEecCCCCcchhHHHHHHH--c-CCeEEecCC-Cc
Q 016975 175 VDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPSTTDVVCTTTAEALA--M-GKIVVCANH-PS 247 (379)
Q Consensus 175 l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~--~dv~v~ps~~E~~~~~~~EAma--~-G~PVI~t~~-g~ 247 (379)
++|+.+.+. ...+.......+..+.........-..+.. .|++++| +.-|+.+++.+. . .+|||.-.. ..
T Consensus 3 ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvilp---~~~g~~~~~~lr~~~~~~~ii~lt~~~~ 79 (223)
T 2hqr_A 3 VLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVMVS---DKNALSFVSRIKEKHSSIVVLVSSDNPT 79 (223)
T ss_dssp EEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTTSCCSEEEEC---CTTHHHHHHHHHHHCTTSEEEEEESSCC
T ss_pred EEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhcCCCCEEEeC---CCCHHHHHHHHHhCCCCCcEEEEECCCC
Confidence 556665554 444566666656555433222111133333 4888844 234555665553 2 677775443 33
Q ss_pred ----ccccccCCCEEEeC---CHHHHHHHHHHHHhCC
Q 016975 248 ----NDFFKQFPNCRTYD---DRNGFVEATLKALAEE 277 (379)
Q Consensus 248 ----~e~i~~~~~g~~~~---~~~~l~~~i~~~l~~~ 277 (379)
.+.+..+..+++.. +++++.++|..++...
T Consensus 80 ~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~~ 116 (223)
T 2hqr_A 80 SEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 116 (223)
T ss_dssp HHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhccc
Confidence 22445666777766 6899999999988764
No 281
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=25.13 E-value=2.1e+02 Score=25.24 Aligned_cols=37 Identities=5% Similarity=-0.008 Sum_probs=19.2
Q ss_pred HHHHHHHhcCCeeEEecCCCCHH--HHHhhc--CEEEecCC
Q 016975 186 QIQEAAEKLKIVVRVYPGRDHAD--LIFHDY--KVFLNPST 222 (379)
Q Consensus 186 ~l~~~~~~~~l~v~~~g~~~~~~--~~~~~~--dv~v~ps~ 222 (379)
.+++.++++++.+.-...+.+++ +.++.. |+.|..++
T Consensus 54 ~v~~~A~~~gIpv~~~~~~~~~~~~~~l~~~~~Dliv~~~y 94 (318)
T 3q0i_A 54 PVKTLALEHNVPVYQPENFKSDESKQQLAALNADLMVVVAY 94 (318)
T ss_dssp HHHHHHHHTTCCEECCSCSCSHHHHHHHHTTCCSEEEESSC
T ss_pred HHHHHHHHcCCCEEccCcCCCHHHHHHHHhcCCCEEEEeCc
Confidence 46677777777653223343333 344332 66665443
No 282
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=24.50 E-value=1.5e+02 Score=21.16 Aligned_cols=107 Identities=7% Similarity=-0.085 Sum_probs=57.0
Q ss_pred CcEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHH-hhcCEEEecCC-CCcchhHHHHHHH---cCCeEEecCC
Q 016975 172 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIF-HDYKVFLNPST-TDVVCTTTAEALA---MGKIVVCANH 245 (379)
Q Consensus 172 ~~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~-~~~dv~v~ps~-~E~~~~~~~EAma---~G~PVI~t~~ 245 (379)
..+++|+.+.+. ...+....+..+..+...........++ ...|+++.-.. .+.-|+.+++.+. ...|||....
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 82 (135)
T 3eqz_A 3 LNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSLNKQDIIILDLMMPDMDGIEVIRHLAEHKSPASLILISG 82 (135)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCCCTTEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEEEES
T ss_pred cceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEEEEe
Confidence 356777776555 4556666655544444332211111111 11477665433 3455666666654 4567765444
Q ss_pred -Ccc-----c----ccccCCCEEEeC--CHHHHHHHHHHHHhCCC
Q 016975 246 -PSN-----D----FFKQFPNCRTYD--DRNGFVEATLKALAEEP 278 (379)
Q Consensus 246 -g~~-----e----~i~~~~~g~~~~--~~~~l~~~i~~~l~~~~ 278 (379)
... + .+..+..+++.. +.+++.++|.++.....
T Consensus 83 ~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~~ 127 (135)
T 3eqz_A 83 YDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQA 127 (135)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC-
T ss_pred ccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhcc
Confidence 321 2 122223356655 99999999999876543
No 283
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=24.41 E-value=70 Score=25.07 Aligned_cols=37 Identities=16% Similarity=0.033 Sum_probs=26.4
Q ss_pred HHHhhcCEEEecC----CCCcchhHHHHHHHcCCeEEecCC
Q 016975 209 LIFHDYKVFLNPS----TTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 209 ~~~~~~dv~v~ps----~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
+.++.||++|.-- ...|.+.=+==|.|.|+|||+-..
T Consensus 74 ~~i~~aD~vvA~ldg~~~D~GT~~EiGyA~A~gkPVv~~~~ 114 (157)
T 1f8y_A 74 NGIKTNDIMLGVYIPDEEDVGLGMELGYALSQGKYVLLVIP 114 (157)
T ss_dssp HHHHTSSEEEEECCGGGCCHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHhCCEEEEEcCCCCCCccHHHHHHHHHHCCCeEEEEEc
Confidence 7889999986432 234444455668999999998754
No 284
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}
Probab=24.31 E-value=3.4e+02 Score=24.66 Aligned_cols=77 Identities=19% Similarity=0.174 Sum_probs=53.8
Q ss_pred CCcEEEEEcCCcChHHHHHHHHhcCCeeEEecC----------CCCHHHHHhhcCEEEe--cCCCC----c---chhHHH
Q 016975 171 AGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPG----------RDHADLIFHDYKVFLN--PSTTD----V---VCTTTA 231 (379)
Q Consensus 171 ~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~----------~~~~~~~~~~~dv~v~--ps~~E----~---~~~~~~ 231 (379)
.+-++-|+|-|.--..+-+.++..|.+|..+.. ....++++..||++++ |...+ + ++-..+
T Consensus 118 ~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~~~~l 197 (381)
T 3oet_A 118 RDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARGDEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLI 197 (381)
T ss_dssp GGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHTTCCSCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBCHHHH
T ss_pred CCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCChHHhccCcccCCHHHHHhhCCEEEEcCcCCccccccchhhcCHHHH
Confidence 356899999988877777788888887776521 2233489999999885 33334 3 344577
Q ss_pred HHHHcCCeEEecCCCc
Q 016975 232 EALAMGKIVVCANHPS 247 (379)
Q Consensus 232 EAma~G~PVI~t~~g~ 247 (379)
++|--|.-+|-+.-|+
T Consensus 198 ~~mk~gailIN~aRG~ 213 (381)
T 3oet_A 198 RRLKPGAILINACRGP 213 (381)
T ss_dssp HHSCTTEEEEECSCGG
T ss_pred hcCCCCcEEEECCCCc
Confidence 7787788777777654
No 285
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=24.27 E-value=86 Score=26.84 Aligned_cols=30 Identities=13% Similarity=0.040 Sum_probs=21.6
Q ss_pred CEEEecCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 215 KVFLNPSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 215 dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
|+++.....+ =-.++.||...|+|||+--.
T Consensus 160 dll~V~Dp~~-e~~Ai~EA~~l~IPvIaivD 189 (256)
T 2vqe_B 160 DAIFVVDPTK-EAIAVREARKLFIPVIALAD 189 (256)
T ss_dssp SEEEESCTTT-THHHHHHHHHTTCCCEECCC
T ss_pred CEEEEeCCcc-chHHHHHHHHcCCCEEEEec
Confidence 6666554332 23679999999999998655
No 286
>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}
Probab=24.20 E-value=2.3e+02 Score=25.10 Aligned_cols=75 Identities=13% Similarity=0.155 Sum_probs=50.0
Q ss_pred cEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCC------------HHHHHhhcCEEEe--cCCCCcch---hHHHHHHH
Q 016975 173 LEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDH------------ADLIFHDYKVFLN--PSTTDVVC---TTTAEALA 235 (379)
Q Consensus 173 ~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~------------~~~~~~~~dv~v~--ps~~E~~~---~~~~EAma 235 (379)
-++-|+|-|.--..+.+.++..|.++..+..... -+++++.||++++ |...|+.+ -..+..|-
T Consensus 142 ~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~~~~~~~l~ell~~sDivslh~Plt~~T~~li~~~~l~~mk 221 (334)
T 3kb6_A 142 LTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKREDLKEKGCVYTSLDELLKESDVISLHVPYTKETHHMINEERISLMK 221 (334)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSC
T ss_pred cEEEEECcchHHHHHHHhhcccCceeeecCCccchhhhhcCceecCHHHHHhhCCEEEEcCCCChhhccCcCHHHHhhcC
Confidence 4677888877767777777777777766643322 2279999999875 44445544 45677776
Q ss_pred cCCeEEecCCCc
Q 016975 236 MGKIVVCANHPS 247 (379)
Q Consensus 236 ~G~PVI~t~~g~ 247 (379)
-|.-+|-+.-|+
T Consensus 222 ~~a~lIN~aRG~ 233 (334)
T 3kb6_A 222 DGVYLINTARGK 233 (334)
T ss_dssp TTEEEEECSCGG
T ss_pred CCeEEEecCccc
Confidence 676666666554
No 287
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=23.86 E-value=2.4e+02 Score=22.56 Aligned_cols=105 Identities=11% Similarity=-0.016 Sum_probs=59.6
Q ss_pred cEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHh--hcCEEEecCC-CCcchhHHHHHHH--cCCeEEecCC-
Q 016975 173 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPST-TDVVCTTTAEALA--MGKIVVCANH- 245 (379)
Q Consensus 173 ~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~--~~dv~v~ps~-~E~~~~~~~EAma--~G~PVI~t~~- 245 (379)
.+++|+.+.+. ...+.......+..+.........-+.+. ..|+++.=.. .+.-|+.+++.+. ..+|||.-..
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~ii~lt~~ 84 (230)
T 2oqr_A 5 TSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTAR 84 (230)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHHCSCSEEEEECC
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhccCCCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEEeCC
Confidence 46777776655 44566666666655443322111113333 3477765432 2344666666553 4677765443
Q ss_pred Cc----ccccccCCCEEEeC--CHHHHHHHHHHHHhCC
Q 016975 246 PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAEE 277 (379)
Q Consensus 246 g~----~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~~ 277 (379)
.. .+.+..+..+++.. +++++.++|..++...
T Consensus 85 ~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 122 (230)
T 2oqr_A 85 DSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRG 122 (230)
T ss_dssp HHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTTT
T ss_pred CcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 22 22344556666665 9999999999988753
No 288
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Probab=23.69 E-value=99 Score=24.63 Aligned_cols=134 Identities=13% Similarity=0.081 Sum_probs=80.0
Q ss_pred eEEEEE-ecccccCHHHHHHHHHHhHhhcCCcEEEEEc-CCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEE--
Q 016975 143 GAYYIG-KMVWSKGYKELLELLDDHQKELAGLEVDLYG-NGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFL-- 218 (379)
Q Consensus 143 ~il~vg-rl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G-~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v-- 218 (379)
+|+.-| .+.-.+....+-+....|++++.+++|-|-= .|.-.-.+.=+..+-+..-...-.+++..+-+...|+.+
T Consensus 25 ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPGhMNVLLAEA~VPYd~v~EMdeIN~df~~tDv~lVI 104 (184)
T 1d4o_A 25 IIITPGYGLCAAKAQYPIADLVKMLSEQGKKVRFGIHPVAGRMPGQLNVLLAEAGVPYDIVLEMDEINHDFPDTDLVLVI 104 (184)
T ss_dssp EEEEECHHHHHTTTHHHHHHHHHHHHHTTCEEEEEECTTCSSSTTHHHHHHHHHTCCGGGEEEHHHHGGGGGGCSEEEEE
T ss_pred EEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccccccCCCcceEEEEEecCCHHHHHhHHHHhhhhhhcCEEEEe
Confidence 555566 4556677777778888887777777777732 122222333233332221000001111115577788865
Q ss_pred ------ecCCC--Cc---chhHHHHHHHcCCeEEecCC-Cc------ccccccCCCEEEeCCHHHHHHHHHHHHhC
Q 016975 219 ------NPSTT--DV---VCTTTAEALAMGKIVVCANH-PS------NDFFKQFPNCRTYDDRNGFVEATLKALAE 276 (379)
Q Consensus 219 ------~ps~~--E~---~~~~~~EAma~G~PVI~t~~-g~------~e~i~~~~~g~~~~~~~~l~~~i~~~l~~ 276 (379)
||+-. .+ +||+++|..-+..-+|.-+. +. ++++-...+-.++-|..+-.+.|...+..
T Consensus 105 GANDvVNPaA~~dp~SpI~GMPvl~v~kAk~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfGDAK~~~~~l~~~l~~ 180 (184)
T 1d4o_A 105 GANDTVNSAAQEDPNSIIAGMPVLEVWKSKQVIVMKRSLGVGYAAVDNPIFYKPNTAMLLGDAKKTCDALQAKVRE 180 (184)
T ss_dssp SCSGGGCTHHHHCTTSTTTTCCCCCGGGSSCEEEEESSSCCCTTCCCCGGGGSTTEEEEESCHHHHHHHHHHHHHT
T ss_pred cCCccCCCccccCCCCCccCCeeeehhhCCEEEEEECCCCCCcCCCcCcceecCCceEEeccHHHHHHHHHHHHHH
Confidence 55432 22 78999999999888887665 22 45666656668888888888888776653
No 289
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=23.65 E-value=71 Score=26.42 Aligned_cols=66 Identities=14% Similarity=0.099 Sum_probs=41.6
Q ss_pred CCcEEEEEcCCc-ChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCCCC---cchhHHHHHHHcCCeEEecC
Q 016975 171 AGLEVDLYGNGE-DFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTD---VVCTTTAEALAMGKIVVCAN 244 (379)
Q Consensus 171 ~~~~l~i~G~g~-~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~~E---~~~~~~~EAma~G~PVI~t~ 244 (379)
.++.+.+-|-.+ +...++++++.+|..+ ...+ -..+.-+|.....+ .-..+.+.|++.|+|||..+
T Consensus 6 ~~~~i~~sg~~~~~~~~l~~~~~~~G~~~--~~~~------~~~~THlI~~~~~~~~~~rt~K~~~a~~~g~~IV~~~ 75 (229)
T 1l0b_A 6 RDISMVVSGLTPKEVMIVQKFAEKYRLAL--TDVI------TEETTHVIIKTDAEFVCERTLKYFLGIAGGKWIVSYS 75 (229)
T ss_dssp CCCEEEEESCCHHHHHHHHHHHHHTTCEE--CSSC------CSSCCEEEECBCTTSEECCCHHHHHHHHTTCEEEETH
T ss_pred CCeEEEEcCCCHHHHHHHHHHHHHcCCEE--eCCc------CCCCCEEEEcCCccccccccHHHHHHHHCCCcEecHH
Confidence 356667766433 3556888888877542 2211 14455566665433 23578899999999999875
No 290
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}
Probab=23.46 E-value=1.5e+02 Score=26.55 Aligned_cols=59 Identities=22% Similarity=0.360 Sum_probs=40.5
Q ss_pred ChHHHHHHHHhcCCeeEEecCCCCHHHHHhh--cCEEEecCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 183 DFNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 183 ~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~--~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
+.+..++.+++.+.. .+ ..+.++++.. .|+++..+....-.-.+.+|+..|++|++-..
T Consensus 55 ~~~~a~~~a~~~~~~-~~---~~~~~~ll~~~~iD~V~i~tp~~~h~~~~~~al~~Gk~V~~EKP 115 (383)
T 3oqb_A 55 SAEKVEALAKRFNIA-RW---TTDLDAALADKNDTMFFDAATTQARPGLLTQAINAGKHVYCEKP 115 (383)
T ss_dssp SSHHHHHHHHHTTCC-CE---ESCHHHHHHCSSCCEEEECSCSSSSHHHHHHHHTTTCEEEECSC
T ss_pred CHHHHHHHHHHhCCC-cc---cCCHHHHhcCCCCCEEEECCCchHHHHHHHHHHHCCCeEEEcCC
Confidence 345566677776643 11 2456678876 68888777666556668899999999997554
No 291
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=23.43 E-value=80 Score=24.07 Aligned_cols=33 Identities=21% Similarity=0.400 Sum_probs=24.6
Q ss_pred hcCCcEEEEEcCCcC----hHHHHHHHHhcCCeeEEe
Q 016975 169 ELAGLEVDLYGNGED----FNQIQEAAEKLKIVVRVY 201 (379)
Q Consensus 169 ~~~~~~l~i~G~g~~----~~~l~~~~~~~~l~v~~~ 201 (379)
..|...++|+|.|.. ..++.+..++.|+.+.+.
T Consensus 64 ~~p~pevliiGTG~~~~~l~p~l~~~l~~~GI~vE~M 100 (135)
T 2fvt_A 64 NANAIDTLIVGTGADVWIAPRQLREALRGVNVVLDTM 100 (135)
T ss_dssp TTTSCSEEEEECTTSCCCCCHHHHHHHHTTTCEEEEE
T ss_pred cCCCCCEEEEcCCCCCCcCCHHHHHHHHHcCCEEEEe
Confidence 356688999998876 466777777778777766
No 292
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=23.39 E-value=2.2e+02 Score=20.87 Aligned_cols=101 Identities=10% Similarity=-0.067 Sum_probs=58.9
Q ss_pred CcEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHH---HHHhhc--CEEEecCCC-CcchhHHHHHH-HcCCeEEec
Q 016975 172 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHAD---LIFHDY--KVFLNPSTT-DVVCTTTAEAL-AMGKIVVCA 243 (379)
Q Consensus 172 ~~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~---~~~~~~--dv~v~ps~~-E~~~~~~~EAm-a~G~PVI~t 243 (379)
..+++|+-|.+. ...+....++.|..+ .+...+.+ ++++.. |+.+.=-.. +.-|+.+++.+ ..++|||..
T Consensus 8 ~~rILiVdD~~~~~~~l~~~L~~~G~~v--~~~a~~g~eAl~~~~~~~~DlvllDi~mP~~~G~el~~~lr~~~ipvI~l 85 (123)
T 2lpm_A 8 RLRVLVVEDESMIAMLIEDTLCELGHEV--AATASRMQEALDIARKGQFDIAIIDVNLDGEPSYPVADILAERNVPFIFA 85 (123)
T ss_dssp CCCEEEESSSTTTSHHHHHHHHHHCCCC--CBCSCCHHHHHHHHHHCCSSEEEECSSSSSCCSHHHHHHHHHTCCSSCCB
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEE--EEEECCHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHcCCCCEEEE
Confidence 467888887666 566777777777553 22333333 444443 777643221 34456666665 357887754
Q ss_pred CC-Ccccc-cccCCCEEEeC--CHHHHHHHHHHHH
Q 016975 244 NH-PSNDF-FKQFPNCRTYD--DRNGFVEATLKAL 274 (379)
Q Consensus 244 ~~-g~~e~-i~~~~~g~~~~--~~~~l~~~i~~~l 274 (379)
.- +..+. ..-+..+++.. +++++.++|.+++
T Consensus 86 Ta~~~~~~~~~~g~~~yl~KP~~~~~L~~~l~~~~ 120 (123)
T 2lpm_A 86 TGYGSKGLDTRYSNIPLLTKPFLDSELEAVLVQIS 120 (123)
T ss_dssp CTTCTTSCCSSSCSCSCBCSSSSHHHHHHHHSTTC
T ss_pred ecCccHHHHHhCCCCcEEECCCCHHHHHHHHHHHH
Confidence 33 33222 22334456666 9999998887653
No 293
>3geb_A EYES absent homolog 2; hydrolase, activator, alternative splicing, cytoplasm, developmental protein, magnesium, nucleus, polymorphism; 2.40A {Homo sapiens} PDB: 3hb0_A 3hb1_A
Probab=23.12 E-value=63 Score=27.64 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=19.9
Q ss_pred HHHHHhHhhc-CCcEEEEEcCCcChHH
Q 016975 161 ELLDDHQKEL-AGLEVDLYGNGEDFNQ 186 (379)
Q Consensus 161 ~a~~~l~~~~-~~~~l~i~G~g~~~~~ 186 (379)
..++.+++++ +++.++++|+|.+.++
T Consensus 218 sCFerI~~RFG~k~~yvvIGDG~eEe~ 244 (274)
T 3geb_A 218 SCFERIMQRFGRKAVYVVIGDGVEEEQ 244 (274)
T ss_dssp HHHHHHHHHHCTTSEEEEEESSHHHHH
T ss_pred HHHHHHHHHhCCCceEEEECCCHHHHH
Confidence 5666666554 8999999999998554
No 294
>2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic transhydrogenase, inner membrane, membrane, oxidoreductase, transmembrane; HET: NAD NAP; NMR {Escherichia coli}
Probab=23.06 E-value=1.1e+02 Score=24.28 Aligned_cols=129 Identities=17% Similarity=0.179 Sum_probs=77.8
Q ss_pred eEEEEE-ecccccCHHHHHHHHHHhHhhcCCcEEEEE---cCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEE
Q 016975 143 GAYYIG-KMVWSKGYKELLELLDDHQKELAGLEVDLY---GNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFL 218 (379)
Q Consensus 143 ~il~vg-rl~~~Kg~~~li~a~~~l~~~~~~~~l~i~---G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v 218 (379)
+|+.-| .+.-.+....+-+..+.|++++.+++|-|- |--|- .+.=+..+-+..-...-.+++..+-+...|+.+
T Consensus 33 ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPG--hMNVLLAEA~VPYd~v~EMdeIN~df~~tDv~l 110 (186)
T 2bru_C 33 VIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPVAGRLPG--HMNVLLAEAKVPYDIVLEMDEINDDFADTDTVL 110 (186)
T ss_dssp EEEECSBHHHHTTTHHHHHHHHHHHHHHCCEEEEEECSSSSSSSS--THHHHHHHHTCCTTTEEESCCCHHHHHHCSEEE
T ss_pred EEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccccccCCC--cceEEEEecCCCHHHHhhHHHHhcccccCCEEE
Confidence 455555 355567777888888888888778888773 43222 222222222221111112333336788889875
Q ss_pred --------ecCCCC--c---chhHHHHHHHcCCeEEecCC-Cc------ccccccCCCEEEeCCHHHHHHHHHHH
Q 016975 219 --------NPSTTD--V---VCTTTAEALAMGKIVVCANH-PS------NDFFKQFPNCRTYDDRNGFVEATLKA 273 (379)
Q Consensus 219 --------~ps~~E--~---~~~~~~EAma~G~PVI~t~~-g~------~e~i~~~~~g~~~~~~~~l~~~i~~~ 273 (379)
||+-.| + +||+++|..-+..-+|.-+. +. ++++-...+-.++-|..+-.+.|...
T Consensus 111 VIGANDvVNPaA~~dp~SpI~GMPvL~v~kAk~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfGDAK~~~~~l~~~ 185 (186)
T 2bru_C 111 VIGANDTVNPAAQDDPKSPIAGMPVLEVWKAQNVIVFKRSMNTGYAGVQNPLFFKENTHMLFGDAKASVDAILKA 185 (186)
T ss_dssp ECBCGGGGCGGGTTSTTSSSTTCCCCCCTTSSEEEEECSSSCCSSCCCSCTTTBSSSEEEECSCHHHHHHHHHHH
T ss_pred EeccccccCccccCCCCCCcCCCeeeccccCCEEEEEECCCCCCcCCCcCcceecCCceEEeccHHHHHHHHHHh
Confidence 665432 2 78999999888877776654 22 44555555667777888877776653
No 295
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Probab=23.03 E-value=1.3e+02 Score=27.84 Aligned_cols=96 Identities=13% Similarity=0.159 Sum_probs=56.2
Q ss_pred cceEEEEEecccccCHHHHHHHHHHhHhhcCCcEEEEEcCCcChHHHHHHHHhcCCee-EEecCCCCHHHHHh--hcCEE
Q 016975 141 AKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVV-RVYPGRDHADLIFH--DYKVF 217 (379)
Q Consensus 141 ~~~il~vgrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~v-~~~g~~~~~~~~~~--~~dv~ 217 (379)
+..|.++|--.-. ...++.++. +.++++++-+-+ .+.+..++.+++.+... .+. ...+.++++. ..|++
T Consensus 83 ~irigiIG~G~~g--~~~~~~~l~----~~~~~~lvav~d-~~~~~~~~~a~~~g~~~~~~~-~~~~~~~ll~~~~vD~V 154 (433)
T 1h6d_A 83 RFGYAIVGLGKYA--LNQILPGFA----GCQHSRIEALVS-GNAEKAKIVAAEYGVDPRKIY-DYSNFDKIAKDPKIDAV 154 (433)
T ss_dssp CEEEEEECCSHHH--HHTHHHHTT----TCSSEEEEEEEC-SCHHHHHHHHHHTTCCGGGEE-CSSSGGGGGGCTTCCEE
T ss_pred ceEEEEECCcHHH--HHHHHHHHh----hCCCcEEEEEEc-CCHHHHHHHHHHhCCCccccc-ccCCHHHHhcCCCCCEE
Confidence 4567788742111 112334432 235676654444 33455666666666421 000 1334446776 67999
Q ss_pred EecCCCCcchhHHHHHHHcCCeEEecC
Q 016975 218 LNPSTTDVVCTTTAEALAMGKIVVCAN 244 (379)
Q Consensus 218 v~ps~~E~~~~~~~EAma~G~PVI~t~ 244 (379)
+..+....-.-.+.+|+..|++|++-.
T Consensus 155 ~iatp~~~h~~~~~~al~aGk~Vl~EK 181 (433)
T 1h6d_A 155 YIILPNSLHAEFAIRAFKAGKHVMCEK 181 (433)
T ss_dssp EECSCGGGHHHHHHHHHHTTCEEEECS
T ss_pred EEcCCchhHHHHHHHHHHCCCcEEEcC
Confidence 988877666667889999999999854
No 296
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=22.94 E-value=3.4e+02 Score=22.87 Aligned_cols=64 Identities=9% Similarity=-0.161 Sum_probs=31.6
Q ss_pred hhcCEEEecCCC-CcchhHHHHHHHcCCeEEecCCCccccccc-CCCEEEeCCHHHHHHHHHHHHh
Q 016975 212 HDYKVFLNPSTT-DVVCTTTAEALAMGKIVVCANHPSNDFFKQ-FPNCRTYDDRNGFVEATLKALA 275 (379)
Q Consensus 212 ~~~dv~v~ps~~-E~~~~~~~EAma~G~PVI~t~~g~~e~i~~-~~~g~~~~~~~~l~~~i~~~l~ 275 (379)
+..|.+|..+.. +...-.+-++...|+|||+.+......-.. ....+..++.+....+...+++
T Consensus 57 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~ 122 (306)
T 2vk2_A 57 QGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVK 122 (306)
T ss_dssp HTCSEEEECCSSSSSCHHHHHHHHHTTCCEEEESSCCCCSCGGGSSEEEECCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCChhhHHHHHHHHHHCCCCEEEecCCCCCCCccceEEEEecCHHHHHHHHHHHHHH
Confidence 345766654332 332223444556899999987633211000 1123344455555555555554
No 297
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=22.32 E-value=3.6e+02 Score=23.35 Aligned_cols=33 Identities=12% Similarity=0.092 Sum_probs=26.5
Q ss_pred hcCEEEecCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 213 DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 213 ~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
..|+++..+....-.-.+.+|+..|++|++-..
T Consensus 72 ~vD~V~I~tP~~~H~~~~~~al~aGkhVl~EKP 104 (312)
T 3o9z_A 72 GVDYLSIASPNHLHYPQIRMALRLGANALSEKP 104 (312)
T ss_dssp CCSEEEECSCGGGHHHHHHHHHHTTCEEEECSS
T ss_pred CCcEEEECCCchhhHHHHHHHHHCCCeEEEECC
Confidence 458888887776666678999999999998654
No 298
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=22.23 E-value=2.4e+02 Score=20.73 Aligned_cols=104 Identities=7% Similarity=-0.009 Sum_probs=58.5
Q ss_pred CcEEEEEcCCcC-hHHHHHHHHhcCCeeEEecCCCCHHHHHhh---cCEEEecC-CCCcchhHHHHHHH---cCCeEEec
Q 016975 172 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD---YKVFLNPS-TTDVVCTTTAEALA---MGKIVVCA 243 (379)
Q Consensus 172 ~~~l~i~G~g~~-~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~---~dv~v~ps-~~E~~~~~~~EAma---~G~PVI~t 243 (379)
..+++|+.+.+. ...+....+. +..+.........-+.+.. .|+++.-. ..+.-|+.+++.+. ...|||..
T Consensus 4 ~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 82 (151)
T 3kcn_A 4 NERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKSDPFSVIMVDMRMPGMEGTEVIQKARLISPNSVYLML 82 (151)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHHSCCCSEEEEESCCSSSCHHHHHHHHHHHCSSCEEEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHcCCCCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEEE
Confidence 356777776555 3444554443 4454433322222244433 37777543 23455666666553 46777654
Q ss_pred CC-Cc----ccccccC-CCEEEeC--CHHHHHHHHHHHHhC
Q 016975 244 NH-PS----NDFFKQF-PNCRTYD--DRNGFVEATLKALAE 276 (379)
Q Consensus 244 ~~-g~----~e~i~~~-~~g~~~~--~~~~l~~~i~~~l~~ 276 (379)
.. .. .+.+..+ ..+++.. +.+++.++|..++..
T Consensus 83 s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~ 123 (151)
T 3kcn_A 83 TGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQ 123 (151)
T ss_dssp ECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHH
Confidence 33 32 2344455 5677766 999999999988763
No 299
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A
Probab=21.92 E-value=1.4e+02 Score=26.66 Aligned_cols=70 Identities=9% Similarity=-0.002 Sum_probs=48.5
Q ss_pred eEEecCCCCHH----HHHhhcCEEEecCCCCcchhHHHHHHH--------cCCeEEecCC--Cc-ccccccCCCEEEeCC
Q 016975 198 VRVYPGRDHAD----LIFHDYKVFLNPSTTDVVCTTTAEALA--------MGKIVVCANH--PS-NDFFKQFPNCRTYDD 262 (379)
Q Consensus 198 v~~~g~~~~~~----~~~~~~dv~v~ps~~E~~~~~~~EAma--------~G~PVI~t~~--g~-~e~i~~~~~g~~~~~ 262 (379)
+.+.|.++.+. ..+..+|++|.+.+. .|+..+-.+. .|+|+|-|.. |. -++...+ .-|
T Consensus 242 i~~~GP~paDt~F~~~~~~~~D~vlaMYHD--QGlip~K~l~F~~gVNvTlGLP~iRTS~DHGTAfDIAGkG-----~A~ 314 (334)
T 3lxy_A 242 INLIGPLPADTLFQPKYLQHADAVLAMYHD--QGLPVLKYQGFGRAVNITLGLPFIRTSVDHGTALELAATG-----TAD 314 (334)
T ss_dssp CCEEEEECHHHHTSHHHHTTCSEEEESSHH--HHHHHHHHHHTTCCEEEEESSSSCEEEESSCCCGGGTTTT-----CSC
T ss_pred CceeCCCChHHhcChhhhccCCEEEEcccc--hhhHhHHhcccCccEEEecCCCeeeecCCCCcchhhccCC-----CCC
Confidence 44678887776 677889999988654 4555555554 5888887765 65 5655544 248
Q ss_pred HHHHHHHHHHHH
Q 016975 263 RNGFVEATLKAL 274 (379)
Q Consensus 263 ~~~l~~~i~~~l 274 (379)
+.+|.++|..++
T Consensus 315 ~~S~~~Ai~~A~ 326 (334)
T 3lxy_A 315 VGSFITALNLAI 326 (334)
T ss_dssp CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 889999987665
No 300
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=21.91 E-value=3.5e+02 Score=22.58 Aligned_cols=37 Identities=5% Similarity=-0.121 Sum_probs=23.9
Q ss_pred HHHHHHHHhcCCcccceeecccCCCCCchHHHHHHhCC
Q 016975 334 ASAYVHFLASGFETSRRAFGAIPGSLHPDEELCKELGL 371 (379)
Q Consensus 334 ~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 371 (379)
+...+..++...+....+|+.... ..-..+.+++.|+
T Consensus 187 ~~~~~~~~l~~~~~~~ai~~~~d~-a~g~~~al~~~g~ 223 (304)
T 3gbv_A 187 DSRMLDDFFREHPDVKHGITFNSK-VYIIGEYLQQRRK 223 (304)
T ss_dssp HHHHHHHHHHHCTTCCEEEESSSC-THHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCeEEEEEcCcc-hHHHHHHHHHcCC
Confidence 333444455545556677777666 5567788889888
No 301
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=21.70 E-value=2.2e+02 Score=20.13 Aligned_cols=67 Identities=12% Similarity=0.045 Sum_probs=45.0
Q ss_pred cCCcEEEEEcCC-cChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecC
Q 016975 170 LAGLEVDLYGNG-EDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCAN 244 (379)
Q Consensus 170 ~~~~~l~i~G~g-~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~ 244 (379)
..++.+.+.|.- ..+.++++++..+|-.+ ...++ ..++.+|.......-+.++..|...|+|||..+
T Consensus 16 l~g~~i~isg~~~~~r~~l~~li~~~Gg~v--~~~~s------~~~THlI~~~~~~~~~~K~~~A~~~gi~IV~~~ 83 (107)
T 3l3e_A 16 LHKVVVCVSKKLSKKQSELNGIAASLGADY--RRSFD------ETVTHFIYQGRPNDTNREYKSVKERGVHIVSEH 83 (107)
T ss_dssp TTTCEEEECGGGGGGHHHHHHHHHHTTCEE--ESSCC------TTCCEEECCCCTTCCCHHHHHHHHTTCEEECHH
T ss_pred CCCeEEEEeCCChHhHHHHHHHHHHcCCEE--ecccc------CCceEEEecCCCCCCCHHHHHHHHCCCeEecHH
Confidence 357888888853 35778888888887653 33332 345666664323344678888999999999754
No 302
>3tsn_A 4-hydroxythreonine-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: UNL; 2.63A {Campylobacter jejuni subsp}
Probab=21.65 E-value=1.2e+02 Score=27.46 Aligned_cols=68 Identities=9% Similarity=-0.040 Sum_probs=46.6
Q ss_pred CCCCHH----HHHhhcCEEEecCCCCcchhHHHHHHH--------cCCeEEecCC--Cc-ccccccCCCEEEeCCHHHHH
Q 016975 203 GRDHAD----LIFHDYKVFLNPSTTDVVCTTTAEALA--------MGKIVVCANH--PS-NDFFKQFPNCRTYDDRNGFV 267 (379)
Q Consensus 203 ~~~~~~----~~~~~~dv~v~ps~~E~~~~~~~EAma--------~G~PVI~t~~--g~-~e~i~~~~~g~~~~~~~~l~ 267 (379)
.++.+. ..+..+|++|--.+ ..|+..+=+++ .|+|+|-|.. |. -++...+. .-|+.++.
T Consensus 281 P~paDT~F~~~~~~~~D~vlAMYH--DQGliplK~l~F~~gVNvTlGLP~IRTSvDHGTAfDIAGkG~----~Ad~~Sl~ 354 (367)
T 3tsn_A 281 PLVADTAFTKTGLKNCNRLVAMYH--DLALAPLKALYFDKSINVSLNLPIIRVSVDHGTAFDKAYKNA----KINTKSYF 354 (367)
T ss_dssp CBCHHHHTSHHHHHHCCEEEESSH--HHHHHHHHHHCTTTCEEEEESSSSCEEECCCCSCTTSCSSCC----CCCCHHHH
T ss_pred CcCchhhhccchhcCCCEEEEccc--cCcchhhhhcccCccEEEecCCCeeeecCCCCcchhhcCCCC----cCChHHHH
Confidence 776666 67788999997643 35555555554 5888887766 55 55554431 24889999
Q ss_pred HHHHHHHhC
Q 016975 268 EATLKALAE 276 (379)
Q Consensus 268 ~~i~~~l~~ 276 (379)
+||..+++-
T Consensus 355 ~Ai~~A~~~ 363 (367)
T 3tsn_A 355 EAAKFAINL 363 (367)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHHh
Confidence 999887764
No 303
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=21.63 E-value=3.4e+02 Score=22.36 Aligned_cols=61 Identities=16% Similarity=0.082 Sum_probs=30.5
Q ss_pred cCEEEe-cCCCCcchhHHHHHHHcCCeEEecCCCcccccccCCCEEEeCCHHHHHHHHHHHHhC
Q 016975 214 YKVFLN-PSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAE 276 (379)
Q Consensus 214 ~dv~v~-ps~~E~~~~~~~EAma~G~PVI~t~~g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~~ 276 (379)
.|.+|. |...+...-.+-++...|+|||.-+..... .+....+..+|.+.-..+...+++.
T Consensus 58 vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~i~~~~~~--~~~~~~V~~D~~~~g~~a~~~L~~~ 119 (271)
T 2dri_A 58 TKILLINPTDSDAVGNAVKMANQANIPVITLDRQATK--GEVVSHIASDNVLGGKIAGDYIAKK 119 (271)
T ss_dssp EEEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCSS--SCCSEEEEECHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCChHHHHHHHHHHHHCCCcEEEecCCCCC--CceeEEEecChHHHHHHHHHHHHHH
Confidence 455444 443333222344556689999998763211 0111234445655555555555553
No 304
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*
Probab=21.13 E-value=80 Score=27.25 Aligned_cols=39 Identities=18% Similarity=0.172 Sum_probs=27.5
Q ss_pred HHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCCc
Q 016975 209 LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS 247 (379)
Q Consensus 209 ~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g~ 247 (379)
+++..+|++|--+.-+..--.+..|+..|+|+|+...|.
T Consensus 68 ~~l~~~DvVIDft~p~~~~~~~~~a~~~G~~vVigTtG~ 106 (273)
T 1dih_A 68 AVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGF 106 (273)
T ss_dssp TTTTSCSEEEECSCHHHHHHHHHHHHHTTCEEEECCCCC
T ss_pred HHhcCCCEEEEcCChHHHHHHHHHHHhCCCCEEEECCCC
Confidence 556688999944444444445678899999999966543
No 305
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=20.96 E-value=4.2e+02 Score=23.16 Aligned_cols=37 Identities=11% Similarity=0.029 Sum_probs=18.9
Q ss_pred HHHHHHHhcCCeeEEecCCCCHH--HHHhh--cCEEEecCC
Q 016975 186 QIQEAAEKLKIVVRVYPGRDHAD--LIFHD--YKVFLNPST 222 (379)
Q Consensus 186 ~l~~~~~~~~l~v~~~g~~~~~~--~~~~~--~dv~v~ps~ 222 (379)
.+++.+.+.++.+.-...+.+++ +.++. .|+.|..++
T Consensus 50 ~v~~~A~~~gIpv~~~~~~~~~~~~~~l~~~~~Dliv~~~y 90 (314)
T 1fmt_A 50 PVKVLAEEKGLPVFQPVSLRPQENQQLVAELQADVMVVVAY 90 (314)
T ss_dssp HHHHHHHHTTCCEECCSCSCSHHHHHHHHHTTCSEEEEESC
T ss_pred HHHHHHHHcCCcEEecCCCCCHHHHHHHHhcCCCEEEEeec
Confidence 46777777777653223333333 33333 366665443
No 306
>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1
Probab=20.76 E-value=92 Score=23.40 Aligned_cols=32 Identities=19% Similarity=0.190 Sum_probs=24.4
Q ss_pred cCCcEEEEEcCCcC----hHHHHHHHHhcCCeeEEe
Q 016975 170 LAGLEVDLYGNGED----FNQIQEAAEKLKIVVRVY 201 (379)
Q Consensus 170 ~~~~~l~i~G~g~~----~~~l~~~~~~~~l~v~~~ 201 (379)
.|...++|+|.|.. ..++.+..++.|+.+.+.
T Consensus 66 ~p~pevliiGtG~~~~~l~p~~~~~l~~~GI~vE~m 101 (128)
T 2fi9_A 66 SDQIEVLLIGTGVELLRLPEELRVLLWEKRISSDTM 101 (128)
T ss_dssp GGGCSEEEEECTTSCCCCCHHHHHHHHHTTCEEEEE
T ss_pred CCCCCEEEECCCCCCCCCCHHHHHHHHHcCCEEEEe
Confidence 45678999998887 466777778888877766
No 307
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=20.66 E-value=1.8e+02 Score=20.26 Aligned_cols=62 Identities=13% Similarity=0.115 Sum_probs=40.7
Q ss_pred CCcEEEEEcCCc-ChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEec
Q 016975 171 AGLEVDLYGNGE-DFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCA 243 (379)
Q Consensus 171 ~~~~l~i~G~g~-~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t 243 (379)
.+..++|.|.-+ .+++++++++.+|.. +.+.+. ...|++|.- +..|-++-.|...|+|||.-
T Consensus 9 ~G~~~v~TG~l~~~R~e~~~~i~~~Gg~--v~~sVs------kkt~~LV~g---~~~gsK~~kA~~lgI~Ii~E 71 (92)
T 1l7b_A 9 KGLTFVITGELSRPREEVKALLRRLGAK--VTDSVS------RKTSYLVVG---ENPGSKLEKARALGVPTLTE 71 (92)
T ss_dssp TTCEEECSTTTTSCHHHHHHHHHHTTCE--EESCCS------SSCCCBEEC---SSSSTTHHHHHCSSSCCEEH
T ss_pred CCcEEEEecCCCCCHHHHHHHHHHcCCE--EeCccc------CCeeEEEeC---CCCChHHHHHHHcCCcEEeH
Confidence 456788888532 678888888887754 334433 344555554 23467788888888888863
No 308
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=20.63 E-value=1.7e+02 Score=26.68 Aligned_cols=61 Identities=8% Similarity=0.110 Sum_probs=41.0
Q ss_pred cChHHHHHHHHhcCCeeEEe-cCCCCHH-HHHhhc--CEEEecCCCCcchhHHHHHHH-cCCeEEecCC
Q 016975 182 EDFNQIQEAAEKLKIVVRVY-PGRDHAD-LIFHDY--KVFLNPSTTDVVCTTTAEALA-MGKIVVCANH 245 (379)
Q Consensus 182 ~~~~~l~~~~~~~~l~v~~~-g~~~~~~-~~~~~~--dv~v~ps~~E~~~~~~~EAma-~G~PVI~t~~ 245 (379)
+....|.+.+++.|+. |+ ..++... +++... |++=.+|. |-....+++++| .|+|||.+.-
T Consensus 101 e~~~~L~~~~~~~Gi~--~~stpfD~~svd~l~~~~vd~~KIgS~-~~~N~pLL~~va~~gKPViLStG 166 (385)
T 1vli_A 101 EWILPLLDYCREKQVI--FLSTVCDEGSADLLQSTSPSAFKIASY-EINHLPLLKYVARLNRPMIFSTA 166 (385)
T ss_dssp GGHHHHHHHHHHTTCE--EECBCCSHHHHHHHHTTCCSCEEECGG-GTTCHHHHHHHHTTCSCEEEECT
T ss_pred HHHHHHHHHHHHcCCc--EEEccCCHHHHHHHHhcCCCEEEECcc-cccCHHHHHHHHhcCCeEEEECC
Confidence 3367788888888754 44 3344444 667554 77777774 555566787665 7999999876
No 309
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}
Probab=20.38 E-value=3.3e+02 Score=24.18 Aligned_cols=76 Identities=20% Similarity=0.187 Sum_probs=49.7
Q ss_pred CcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCC----------CHHHHHhhcCEEEecC--CCCc---chhHHHHHHHc
Q 016975 172 GLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRD----------HADLIFHDYKVFLNPS--TTDV---VCTTTAEALAM 236 (379)
Q Consensus 172 ~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~----------~~~~~~~~~dv~v~ps--~~E~---~~~~~~EAma~ 236 (379)
+-++-|+|-|.--..+-+.++..|.++..+.... ..++++..||++++.. ..+. ++-..++.|--
T Consensus 171 gktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~ 250 (340)
T 4dgs_A 171 GKRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLSGVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGP 250 (340)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCTTSCCEECSSHHHHHHTCSEEEECC----------CHHHHHHTTT
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCcccccCceecCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCC
Confidence 4578899988877777777778888777664322 2238899999988642 2333 33457777877
Q ss_pred CCeEEecCCCc
Q 016975 237 GKIVVCANHPS 247 (379)
Q Consensus 237 G~PVI~t~~g~ 247 (379)
|.-+|-+..|.
T Consensus 251 gailIN~aRG~ 261 (340)
T 4dgs_A 251 EGIVVNVARGN 261 (340)
T ss_dssp TCEEEECSCC-
T ss_pred CCEEEECCCCc
Confidence 87777766554
No 310
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=20.38 E-value=4.2e+02 Score=22.94 Aligned_cols=33 Identities=18% Similarity=0.169 Sum_probs=26.6
Q ss_pred hcCEEEecCCCCcchhHHHHHHHcCCeEEecCC
Q 016975 213 DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 245 (379)
Q Consensus 213 ~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~ 245 (379)
..|+++..+....-.-.+.+|+..|++|++=..
T Consensus 73 ~vD~V~I~tP~~~H~~~~~~al~aGkhVl~EKP 105 (318)
T 3oa2_A 73 ALDYVSICSPNYLHYPHIAAGLRLGCDVICEKP 105 (318)
T ss_dssp SCCEEEECSCGGGHHHHHHHHHHTTCEEEECSS
T ss_pred CCcEEEECCCcHHHHHHHHHHHHCCCeEEEECC
Confidence 458888887776666678899999999998665
No 311
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural GE PSI; 2.01A {Pseudomonas aeruginosa}
Probab=20.32 E-value=2.3e+02 Score=25.19 Aligned_cols=114 Identities=12% Similarity=0.051 Sum_probs=66.3
Q ss_pred cCHHHHHHHHHH-hHhhc--CCcEEEEEcC----CcC----hHH---HHHHHHhc-CCeeEEecCCCCHH----HHHhhc
Q 016975 154 KGYKELLELLDD-HQKEL--AGLEVDLYGN----GED----FNQ---IQEAAEKL-KIVVRVYPGRDHAD----LIFHDY 214 (379)
Q Consensus 154 Kg~~~li~a~~~-l~~~~--~~~~l~i~G~----g~~----~~~---l~~~~~~~-~l~v~~~g~~~~~~----~~~~~~ 214 (379)
+.+...++.+.+ +++++ .+-++.|+|= |+. .++ +.-.++++ ...+.+.|.++.+. ..+..+
T Consensus 178 e~i~~~i~~~~~~L~~~fgi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~Pai~~~r~~Gi~~~GP~paDT~F~~~~~~~~ 257 (328)
T 1yxo_A 178 ERLTRVARILHADLRDKFGIAHPRILVCGLNPHAGEGGHLGREEIEVIEPCLERLRGEGLDLIGPLPADTLFTPKHLEHC 257 (328)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGTTTTTCSHHHHTHHHHHHHHHTTTCEEEEEECHHHHTSHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCCCCCCCCCHhHHHHHHHHHHHHHHCCCceeCCCCchhhcccccccCC
Confidence 444444555444 33322 4678999992 221 222 22222221 11456788887777 677888
Q ss_pred CEEEecCCCCcchhHHHHHHH--------cCCeEEecCC--Cc-ccccccCCCEEEeCCHHHHHHHHHHHH
Q 016975 215 KVFLNPSTTDVVCTTTAEALA--------MGKIVVCANH--PS-NDFFKQFPNCRTYDDRNGFVEATLKAL 274 (379)
Q Consensus 215 dv~v~ps~~E~~~~~~~EAma--------~G~PVI~t~~--g~-~e~i~~~~~g~~~~~~~~l~~~i~~~l 274 (379)
|++|--.+ -.|+..+=+++ .|+|+|-|.. |. -++...+ .-|+.+|.++|..+.
T Consensus 258 D~vlaMYH--DQGlip~K~l~F~~gVNvTlGLP~iRTSvDHGTAfDIAGkG-----~A~~~Sl~~Ai~~A~ 321 (328)
T 1yxo_A 258 DAVLAMYH--DQGLPVLKYKGFGAAVNVTLGLPIIRTSVDHGTALDLAGSG-----RIDSGSLQVALETAY 321 (328)
T ss_dssp SEEEESSH--HHHHHHHHHHHTTSCEEEEESSSSCEEEECSCCCGGGTTTC-----CCCCHHHHHHHHHHH
T ss_pred CEEEEccc--ccccHhHhhcccCcceEEecCCCEEEecCCCCccccccCCC-----CCChHHHHHHHHHHH
Confidence 99996643 45566665554 4677776655 55 5555443 238889999987654
No 312
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=20.21 E-value=3.8e+02 Score=22.28 Aligned_cols=62 Identities=21% Similarity=0.118 Sum_probs=31.3
Q ss_pred hcCEEEe-cCCCCcchhHHHHHHHcCCeEEecCCCcccccccCCCEEEeCCHHHHHHHHHHHHhC
Q 016975 213 DYKVFLN-PSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAE 276 (379)
Q Consensus 213 ~~dv~v~-ps~~E~~~~~~~EAma~G~PVI~t~~g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~~ 276 (379)
..|.+|. |...+...-.+-++...|+|||.-+...... .....+..+|.+.-..+...+++.
T Consensus 57 ~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~--~~~~~V~~D~~~~g~~a~~~L~~~ 119 (283)
T 2ioy_A 57 KVDVLLINPVDSDAVVTAIKEANSKNIPVITIDRSANGG--DVVCHIASDNVKGGEMAAEFIAKA 119 (283)
T ss_dssp TCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCSSS--CCSEEEEECHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCchhhhHHHHHHHHHCCCeEEEecCCCCCc--ceeEEEecChHHHHHHHHHHHHHH
Confidence 4566554 4433332223445557899999887532110 011123444555555555665554
No 313
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5
Probab=20.21 E-value=2.6e+02 Score=24.32 Aligned_cols=70 Identities=16% Similarity=0.152 Sum_probs=43.3
Q ss_pred cCCcEEEEEcCCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecC
Q 016975 170 LAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCAN 244 (379)
Q Consensus 170 ~~~~~l~i~G~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~ 244 (379)
.++++++ +-+ .+.+..++.+++.+.... ..+..+.+-...|+++..+......-.+.+|+..|++|++-.
T Consensus 25 ~~~~~l~-v~d-~~~~~~~~~a~~~g~~~~---~~~~~~~l~~~~D~V~i~tp~~~h~~~~~~al~~Gk~V~~EK 94 (323)
T 1xea_A 25 WPDIELV-LCT-RNPKVLGTLATRYRVSAT---CTDYRDVLQYGVDAVMIHAATDVHSTLAAFFLHLGIPTFVDK 94 (323)
T ss_dssp STTEEEE-EEC-SCHHHHHHHHHHTTCCCC---CSSTTGGGGGCCSEEEECSCGGGHHHHHHHHHHTTCCEEEES
T ss_pred CCCceEE-EEe-CCHHHHHHHHHHcCCCcc---ccCHHHHhhcCCCEEEEECCchhHHHHHHHHHHCCCeEEEeC
Confidence 3567777 333 344556666666664310 122223232567999988776655566778999999999754
No 314
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=20.21 E-value=2.5e+02 Score=24.67 Aligned_cols=47 Identities=15% Similarity=0.122 Sum_probs=29.3
Q ss_pred HHHHHHcCCeEEecCCCcccccccCCCEEEeCCHHHHHHHHHHHHhCCCC
Q 016975 230 TAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEEPA 279 (379)
Q Consensus 230 ~~EAma~G~PVI~t~~g~~e~i~~~~~g~~~~~~~~l~~~i~~~l~~~~~ 279 (379)
+-++...|+|||..+..... .....+..++.+....+...++...-.
T Consensus 144 ~~~l~~~~iPvV~i~~~~~~---~~~~~V~~D~~~~~~~a~~~L~~~G~r 190 (366)
T 3h5t_A 144 IDAIRARGLPAVIADQPARE---EGMPFIAPNNRKAIAPAAQALIDAGHR 190 (366)
T ss_dssp HHHHHHHTCCEEEESSCCSC---TTCCEEEECHHHHTHHHHHHHHHTTCC
T ss_pred HHHHHHCCCCEEEECCccCC---CCCCEEEeChHHHHHHHHHHHHHCCCC
Confidence 44456789999998763211 122345566777777777777775433
No 315
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=20.19 E-value=2.5e+02 Score=21.94 Aligned_cols=70 Identities=11% Similarity=0.019 Sum_probs=42.3
Q ss_pred EEEEEcCCcCh---HHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEEecCCCCcch---hHHHHHHHcCCeEEecCC
Q 016975 174 EVDLYGNGEDF---NQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVC---TTTAEALAMGKIVVCANH 245 (379)
Q Consensus 174 ~l~i~G~g~~~---~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v~ps~~E~~~---~~~~EAma~G~PVI~t~~ 245 (379)
++.++|.|... ..+.......+.++.+.+... ...+..-|++|.-|...... -.+-+|-..|.+||+--.
T Consensus 39 ~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~--~~~~~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~ 114 (186)
T 1m3s_A 39 QIFTAGAGRSGLMAKSFAMRLMHMGFNAHIVGEIL--TPPLAEGDLVIIGSGSGETKSLIHTAAKAKSLHGIVAALTI 114 (186)
T ss_dssp CEEEECSHHHHHHHHHHHHHHHHTTCCEEETTSTT--CCCCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEES
T ss_pred eEEEEecCHHHHHHHHHHHHHHhcCCeEEEeCccc--ccCCCCCCEEEEEcCCCCcHHHHHHHHHHHHCCCEEEEEEC
Confidence 57888977652 334444556777777664331 13345568888888753222 234456678998887554
No 316
>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*
Probab=20.18 E-value=1.2e+02 Score=26.65 Aligned_cols=39 Identities=15% Similarity=-0.034 Sum_probs=27.8
Q ss_pred HHHHhhcCEEEecCCCCcchhHHHHHHHcCCeEEecCCC
Q 016975 208 DLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHP 246 (379)
Q Consensus 208 ~~~~~~~dv~v~ps~~E~~~~~~~EAma~G~PVI~t~~g 246 (379)
++++..+|+++..+....---.+..++..|++||++...
T Consensus 53 ~~ll~~~DvViiatp~~~h~~~~~~al~aG~~Vv~ekp~ 91 (320)
T 1f06_A 53 DKHADDVDVLFLCMGSATDIPEQAPKFAQFACTVDTYDN 91 (320)
T ss_dssp GGTTTTCSEEEECSCTTTHHHHHHHHHTTTSEEECCCCC
T ss_pred HHHhcCCCEEEEcCCcHHHHHHHHHHHHCCCEEEECCCC
Confidence 345577899988775543333456888999999998763
No 317
>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of N oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A*
Probab=20.02 E-value=1e+02 Score=25.14 Aligned_cols=134 Identities=13% Similarity=0.102 Sum_probs=78.1
Q ss_pred eEEEEE-ecccccCHHHHHHHHHHhHhhcCCcEEEEEc-CCcChHHHHHHHHhcCCeeEEecCCCCHHHHHhhcCEEE--
Q 016975 143 GAYYIG-KMVWSKGYKELLELLDDHQKELAGLEVDLYG-NGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFL-- 218 (379)
Q Consensus 143 ~il~vg-rl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G-~g~~~~~l~~~~~~~~l~v~~~g~~~~~~~~~~~~dv~v-- 218 (379)
+|+.-| .+.-.+-...+-+..+.|+++..+++|-|-= .|...-.+.=+..+-+..-...-.+++..+-+...|+.+
T Consensus 48 ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPGhMNVLLAEA~VPYd~v~EMdeIN~df~~tDv~lVI 127 (207)
T 1djl_A 48 IIITPGYGLCAAKAQYPIADLVKMLTEQGKKVRFGIHPVAGRMPGQLNVLLAEAGVPYDIVLEMDEINHDFPDTDLVLVI 127 (207)
T ss_dssp EEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTTCSSSTTHHHHHHHHTTCCGGGEEEHHHHGGGGGGCSEEEEE
T ss_pred EEEECCchHHHHHHhHHHHHHHHHHHHCCCeEEEEeCccCCCCCCCCcEEEEEeCCCHHHHhhHHHHhhhhhhcCEEEEe
Confidence 555555 4555677777777777777776677777632 122222333333332221100001111115577788865
Q ss_pred ------ecCCCC-----cchhHHHHHHHcCCeEEecCC-Cc------ccccccCCCEEEeCCHHHHHHHHHHHHhC
Q 016975 219 ------NPSTTD-----VVCTTTAEALAMGKIVVCANH-PS------NDFFKQFPNCRTYDDRNGFVEATLKALAE 276 (379)
Q Consensus 219 ------~ps~~E-----~~~~~~~EAma~G~PVI~t~~-g~------~e~i~~~~~g~~~~~~~~l~~~i~~~l~~ 276 (379)
||+-.| -+||+++|..-+..-+|.-+. +. ++++-...+-.++-|..+-.+.|...+..
T Consensus 128 GANDvVNPaA~~dp~SpI~GMPvL~v~kAk~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfGDAK~~~~~l~~~l~~ 203 (207)
T 1djl_A 128 GANDTVNSAAQEDPNSIIAGMPVLEVWKSKQVIVMKRSLGVGYAAVDNPIFYKPNTAMLLGDAKKTCDALQAKVRE 203 (207)
T ss_dssp SCCGGGCTHHHHCTTSTTTTCCCCCGGGSSEEEEEESSSCCCTTCCCCGGGGSTTEEEEESCHHHHHHHHHHHHHT
T ss_pred ccccccCCccccCCCCCccCCeeecceecCEEEEEECCCCCCcCCCcCcceecCCceEEeccHHHHHHHHHHHHHH
Confidence 554321 278999999988877777664 21 45666666668888988888888777653
No 318
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=20.01 E-value=2.5e+02 Score=20.11 Aligned_cols=104 Identities=9% Similarity=0.008 Sum_probs=57.9
Q ss_pred cEEEEEcCCcC-hHHHHHHHHhcCCe-eEEecCCCCHHHHHh-------hcCEEEecCCC-CcchhHHHHHHHc----CC
Q 016975 173 LEVDLYGNGED-FNQIQEAAEKLKIV-VRVYPGRDHADLIFH-------DYKVFLNPSTT-DVVCTTTAEALAM----GK 238 (379)
Q Consensus 173 ~~l~i~G~g~~-~~~l~~~~~~~~l~-v~~~g~~~~~~~~~~-------~~dv~v~ps~~-E~~~~~~~EAma~----G~ 238 (379)
.+++|+.+.+. ...+....+..+.. +.....-...-+.+. ..|+++.=-.. +.-|+.+++.+.. ..
T Consensus 3 ~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~ 82 (133)
T 2r25_B 3 VKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGYTS 82 (133)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHSCCCS
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCChHHHHHHHHhhcCCCC
Confidence 45677776555 44455555555542 332222111113333 24777753322 3346666666642 45
Q ss_pred eEEe-cCCCc----ccccccCCCEEEeC--CHHHHHHHHHHHHhC
Q 016975 239 IVVC-ANHPS----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 276 (379)
Q Consensus 239 PVI~-t~~g~----~e~i~~~~~g~~~~--~~~~l~~~i~~~l~~ 276 (379)
|||. |..+. .+.+..+..+++.. +.+++.+++.+++..
T Consensus 83 ~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 127 (133)
T 2r25_B 83 PIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAA 127 (133)
T ss_dssp CEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCTT
T ss_pred CEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Confidence 7664 44433 23455667788777 999999999988754
Done!