Query 016976
Match_columns 379
No_of_seqs 231 out of 542
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 04:31:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016976.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016976hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03479 DUF296: Domain of unk 100.0 3.7E-29 8E-34 212.2 10.8 114 153-268 1-116 (120)
2 COG1661 Predicted DNA-binding 99.9 2.4E-25 5.3E-30 196.8 13.4 115 151-269 7-124 (141)
3 PF02178 AT_hook: AT hook moti 95.7 0.0038 8.2E-08 35.7 0.5 11 81-91 1-11 (13)
4 smart00384 AT_hook DNA binding 95.6 0.0057 1.2E-07 40.9 1.3 14 81-94 1-14 (26)
5 PF14621 RFX5_DNA_bdg: RFX5 DN 83.0 0.44 9.5E-06 45.2 0.4 12 79-90 66-77 (219)
6 PF13546 DDE_5: DDE superfamil 74.4 1.7 3.8E-05 41.0 1.6 16 78-93 228-243 (273)
7 COG1710 Uncharacterized protei 68.5 2.3 5E-05 38.3 0.9 15 78-92 81-96 (139)
8 PF03306 AAL_decarboxy: Alpha- 53.7 59 0.0013 31.3 7.6 102 158-261 84-197 (220)
9 TIGR01252 acetolac_decarb alph 51.7 64 0.0014 31.4 7.6 82 179-261 106-199 (232)
10 COG1777 Predicted transcriptio 47.1 8 0.00017 37.5 0.7 15 80-94 63-77 (217)
11 PF02196 RBD: Raf-like Ras-bin 41.1 1.3E+02 0.0028 23.8 6.6 42 154-197 11-54 (71)
12 COG3527 AlsD Alpha-acetolactat 29.6 86 0.0019 31.0 4.6 99 163-263 93-203 (234)
13 cd01817 RGS12_RBD Ubiquitin do 29.6 1.4E+02 0.0031 24.6 5.2 43 155-197 11-55 (73)
14 smart00455 RBD Raf-like Ras-bi 26.6 2E+02 0.0044 22.8 5.5 35 154-188 10-46 (70)
15 PF13737 DDE_Tnp_1_5: Transpos 25.5 34 0.00073 29.9 1.0 14 78-91 21-34 (112)
16 KOG4565 E93 protein involved i 23.2 27 0.00058 33.3 -0.0 14 79-92 111-124 (206)
No 1
>PF03479 DUF296: Domain of unknown function (DUF296); InterPro: IPR005175 This putative conserved domain is found in proteins that contain AT-hook motifs IPR000637 from INTERPRO, suggesting a DNA-binding function for the proteins as a whole, however, the function of this domain is unknown. Overexpression of a protein containing this domain, Q9S7C9 from SWISSPROT, in Arabidopsis thaliana causes late flowering and modified leaf development []. ; PDB: 2DT4_A 2P6Y_A 3HWU_A 3HTN_A 2NMU_A 2H6L_A 2HX0_A.
Probab=99.96 E-value=3.7e-29 Score=212.17 Aligned_cols=114 Identities=26% Similarity=0.352 Sum_probs=98.6
Q ss_pred ceeEEEEecCCCcHHHHHHHHHHHcCccEEEEEeeceeeeeEecCCC--CCCCceeeecceeEEEeeeeeecCCCCCccc
Q 016976 153 FTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPA--TSGGNITYEGRFEIVSLSGSYVRTDLGGRTG 230 (379)
Q Consensus 153 ftphVIrL~~GEDIv~kI~~Faqq~~~aicILSAiGAVSnVTLr~~~--~s~~tityeG~fEILSLsGnis~~e~G~~~~ 230 (379)
||+|++||++||||+++|++||+++++.+|+|++||+|++|+|++++ ..+..++|+|+|||+||+|||+. .+++++.
T Consensus 1 ~r~~~~rl~~Gedl~~~l~~~~~~~~i~~~~is~iGsl~~~~l~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~-~~g~~~~ 79 (120)
T PF03479_consen 1 GRVFVIRLDPGEDLLESLEAFAREHGIRSGVISGIGSLSNVTLGYYDPPSYYEPLEFEGPFEIISLSGTISP-EDGKPFV 79 (120)
T ss_dssp EEEEEEEEETTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEEEEEETTTEEEEEEEESEEEEEEEEEEEEE-ETTEEEE
T ss_pred CcEEEEEECCCCHHHHHHHHHHHHCCCcEEEEEEEeEEeEEEEEEecccCCcceEEecccEEEEEeEEEEEC-CCCCCcc
Confidence 79999999999999999999999999999999999999999999994 45778999999999999999998 5678999
Q ss_pred eeEEEEeCCCCcEEceecCCceeEeccEEEEEEEcccc
Q 016976 231 GLSVCLSSTDGQIIGGGVGGPLKAAGPVQVIVGTFQVE 268 (379)
Q Consensus 231 HLHISLAd~DG~ViGGHL~G~lIAATtVeVVvgSF~~~ 268 (379)
||||+|+|.||+++||||..+.+ ..++||+|..+...
T Consensus 80 HlHisl~~~~g~v~gGHl~~g~v-~~t~Ev~i~~~~~~ 116 (120)
T PF03479_consen 80 HLHISLADPDGQVFGGHLLEGTV-FATAEVVITELSGI 116 (120)
T ss_dssp EEEEEEE-TTSEEEEEEEEEEEE-EEEEEEEEEEETTE
T ss_pred eEEEEEECCCCeEEeeEeCCCEE-eEEEEEEEEEecCc
Confidence 99999999999999999994444 33566666555443
No 2
>COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]
Probab=99.93 E-value=2.4e-25 Score=196.77 Aligned_cols=115 Identities=20% Similarity=0.244 Sum_probs=107.6
Q ss_pred CCceeEEEEecCCCcHHHHHHHHHHHcCccEEEEEeeceeeeeEecCCCCC---CCceeeecceeEEEeeeeeecCCCCC
Q 016976 151 QGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATS---GGNITYEGRFEIVSLSGSYVRTDLGG 227 (379)
Q Consensus 151 ~~ftphVIrL~~GEDIv~kI~~Faqq~~~aicILSAiGAVSnVTLr~~~~s---~~tityeG~fEILSLsGnis~~e~G~ 227 (379)
+.-+.+++||++|||+++.|.+||+++++.+++++|||+|++++|++++.+ |.+++++|+||||||.|||+.++
T Consensus 7 ~~gr~~~~Rld~G~d~~~~l~~~a~~~~i~aa~v~~iGal~~~~l~~~~~~~~~y~~~~~~e~~EvlSL~G~i~~~~--- 83 (141)
T COG1661 7 SSGRVIALRLDPGEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGNIALDD--- 83 (141)
T ss_pred ccceEEEEEeCCCccHHHHHHHHHHhcCceEEEEEEeeeeeeeEEEEecCCCCceEEEecCCcEEEEEecceeecCC---
Confidence 345889999999999999999999999999999999999999999999853 78999999999999999999986
Q ss_pred ccceeEEEEeCCCCcEEceecCCceeEeccEEEEEEEccccc
Q 016976 228 RTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVIVGTFQVES 269 (379)
Q Consensus 228 ~~~HLHISLAd~DG~ViGGHL~G~lIAATtVeVVvgSF~~~~ 269 (379)
|+.|||++|++++|.++||||.+++|.. ++||+|..+....
T Consensus 84 p~~HlHa~l~~~~G~~~GGHL~~~~V~~-t~Ev~I~el~~~~ 124 (141)
T COG1661 84 PFVHLHAALGDENGITLGGHLLEGEVFP-TAEVFIRELPGEL 124 (141)
T ss_pred CcEEEEEEEecCCCcEEeeeecccEEeE-EEEEEEEEccccc
Confidence 8999999999999999999999999997 8999999998773
No 3
>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions. These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.
Probab=95.70 E-value=0.0038 Score=35.70 Aligned_cols=11 Identities=73% Similarity=1.202 Sum_probs=4.6
Q ss_pred cccCCCCCCCC
Q 016976 81 KKKRGRPRKYG 91 (379)
Q Consensus 81 KkKRGRPRKYg 91 (379)
+|+||||||+.
T Consensus 1 ~r~RGRP~k~~ 11 (13)
T PF02178_consen 1 KRKRGRPRKNA 11 (13)
T ss_dssp S--SS--TT--
T ss_pred CCcCCCCcccc
Confidence 68999999985
No 4
>smart00384 AT_hook DNA binding domain with preference for A/T rich regions. Small DNA-binding motif first described in the high mobility group non-histone chromosomal protein HMG-I(Y).
Probab=95.64 E-value=0.0057 Score=40.93 Aligned_cols=14 Identities=57% Similarity=0.873 Sum_probs=11.6
Q ss_pred cccCCCCCCCCCCC
Q 016976 81 KKKRGRPRKYGTPE 94 (379)
Q Consensus 81 KkKRGRPRKYg~~~ 94 (379)
|||||||||+..+.
T Consensus 1 kRkRGRPrK~~~~~ 14 (26)
T smart00384 1 KRKRGRPRKAPKDX 14 (26)
T ss_pred CCCCCCCCCCCCcc
Confidence 79999999997543
No 5
>PF14621 RFX5_DNA_bdg: RFX5 DNA-binding domain
Probab=83.02 E-value=0.44 Score=45.22 Aligned_cols=12 Identities=75% Similarity=1.115 Sum_probs=10.6
Q ss_pred cccccCCCCCCC
Q 016976 79 PAKKKRGRPRKY 90 (379)
Q Consensus 79 ~~KkKRGRPRKY 90 (379)
-.|||||||||-
T Consensus 66 dAKRKRGRPRKK 77 (219)
T PF14621_consen 66 DAKRKRGRPRKK 77 (219)
T ss_pred hhhhhcCCCccC
Confidence 479999999976
No 6
>PF13546 DDE_5: DDE superfamily endonuclease
Probab=74.41 E-value=1.7 Score=41.03 Aligned_cols=16 Identities=63% Similarity=1.128 Sum_probs=11.8
Q ss_pred ccccccCCCCCCCCCC
Q 016976 78 EPAKKKRGRPRKYGTP 93 (379)
Q Consensus 78 ~~~KkKRGRPRKYg~~ 93 (379)
.+..+|||||||||.-
T Consensus 228 ~~~~~~rGRPr~~g~~ 243 (273)
T PF13546_consen 228 PPPPPKRGRPRKYGRR 243 (273)
T ss_pred cccCCCCCCCCCCCCc
Confidence 3445569999999943
No 7
>COG1710 Uncharacterized protein conserved in archaea [Function unknown]
Probab=68.49 E-value=2.3 Score=38.25 Aligned_cols=15 Identities=67% Similarity=1.099 Sum_probs=12.7
Q ss_pred cccc-ccCCCCCCCCC
Q 016976 78 EPAK-KKRGRPRKYGT 92 (379)
Q Consensus 78 ~~~K-kKRGRPRKYg~ 92 (379)
-|+| |-|||||||..
T Consensus 81 IPvk~KgrGrprkyd~ 96 (139)
T COG1710 81 IPVKLKGRGRPRKYDR 96 (139)
T ss_pred eeeeecCCCCCcccch
Confidence 5778 88999999964
No 8
>PF03306 AAL_decarboxy: Alpha-acetolactate decarboxylase; InterPro: IPR005128 Alpha-acetolactate decarboxylase plays a dual role in the cell: (i) it catalyzes the second step of the acetoin pathway, (S)-2-hydroxy-2-methyl-3-oxobutanoate = (R)-2-acetoin + CO2 and thus potentially the internal pH of cells and (ii) it controls the pool of alpha-acetolactate during leucine and valine synthesis.; GO: 0047605 acetolactate decarboxylase activity, 0019751 polyol metabolic process, 0005789 endoplasmic reticulum membrane; PDB: 1XV2_B.
Probab=53.66 E-value=59 Score=31.34 Aligned_cols=102 Identities=19% Similarity=0.261 Sum_probs=56.6
Q ss_pred EEecCCCcHHHHHHHHHHHcCccEEEEEeeceeeeeEecCCCCCCC-------ceeeecceeEEEeeeeee----cCCCC
Q 016976 158 ISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATSGG-------NITYEGRFEIVSLSGSYV----RTDLG 226 (379)
Q Consensus 158 IrL~~GEDIv~kI~~Faqq~~~aicILSAiGAVSnVTLr~~~~s~~-------tityeG~fEILSLsGnis----~~e~G 226 (379)
.....-++|.+.|.+..... .....+-.-|..+.|++|-.-...+ .+.-+-.||.-.+.|++. +.--+
T Consensus 84 ~~~~~~~~l~~~l~~~~~~~-N~f~airi~G~F~~v~~Rsv~~qe~Py~~l~e~~~~Q~~f~~~ni~GTlVGf~sP~~~~ 162 (220)
T PF03306_consen 84 DSPMSKEELEAKLDELLPSK-NLFYAIRIDGTFSSVKTRSVPKQEKPYPPLAEVAKNQPEFTFENIEGTLVGFYSPEYMG 162 (220)
T ss_dssp EEEEEHHHHHHHHHHHSS-T-TS-EEEEEEEEEEEEEEE------SS---THHHHTT--EEEEEEEEEEEEEEEE-GGGB
T ss_pred CCCCCHHHHHHHHHHhcCCC-ceEEEEEEEEEECeEEEEeccCccCCCCChhHHhccCceEEecCcEEEEEEEEcchhcc
Confidence 34444567777777776643 3477778899999999997643211 111134577777777764 32222
Q ss_pred C-ccceeEEEEeCCCCcEEceecCCceeEeccEEEE
Q 016976 227 G-RTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVI 261 (379)
Q Consensus 227 ~-~~~HLHISLAd~DG~ViGGHL~G~lIAATtVeVV 261 (379)
+ -..++|+-+-+.| +.+||||.+..+...+|+|-
T Consensus 163 gi~v~G~HlHFls~D-r~~GGHvld~~~~~~~v~~~ 197 (220)
T PF03306_consen 163 GINVPGFHLHFLSDD-RTFGGHVLDFELDNGTVEID 197 (220)
T ss_dssp TTB-CEEEEEEEETT-SS-EEEEEEEEEEEEEEEEE
T ss_pred ccCCceEEEEEecCC-CCCCCCeEEEEeceEEEEEE
Confidence 2 2334555555444 56799999888866555553
No 9
>TIGR01252 acetolac_decarb alpha-acetolactate decarboxylase. Puruvate can be fermented to 2,3-butanediol. It is first converted to alpha-acetolactate by alpha-acetolactate synthase, then decarboxylated to acetoin by this enzyme. Acetoin can be reduced in some species to 2,3-butanediol by acetoin reductase.
Probab=51.71 E-value=64 Score=31.44 Aligned_cols=82 Identities=16% Similarity=0.233 Sum_probs=52.0
Q ss_pred ccEEEEEeeceeeeeEecCCCCC---CCc----eeeecceeEEEeeeeee----cCC-CCCccceeEEEEeCCCCcEEce
Q 016976 179 REICILSASGSISNASLRQPATS---GGN----ITYEGRFEIVSLSGSYV----RTD-LGGRTGGLSVCLSSTDGQIIGG 246 (379)
Q Consensus 179 ~aicILSAiGAVSnVTLr~~~~s---~~t----ityeG~fEILSLsGnis----~~e-~G~~~~HLHISLAd~DG~ViGG 246 (379)
-..+-+-.-|.++.|+.|---.. |.. +.=+-.||+-.+.|++. +.- .|--..++|+-+-+.| +.+||
T Consensus 106 N~f~Airi~G~F~~v~~Rsvp~Q~kPy~~l~e~~~~Q~~f~~~nv~GTlvGF~sP~~~~gi~v~G~HlHFisdD-r~~GG 184 (232)
T TIGR01252 106 NVFYAIRITGEFPKVQTRTVPKQEKPYPPFVEVVKGQPEFHFDNVTGTIVGFWTPAYAKGINVAGYHLHFISED-RTFGG 184 (232)
T ss_pred ccEEEEEEEEEeceeEEEecCCCCCCCcCHHHHhcCCceEEEeccEEEEEEEecchhccccCCceEEEEEecCC-CCCCc
Confidence 46888889999999999974322 211 11244588887777765 322 1222345666666555 45699
Q ss_pred ecCCceeEeccEEEE
Q 016976 247 GVGGPLKAAGPVQVI 261 (379)
Q Consensus 247 HL~G~lIAATtVeVV 261 (379)
||.+..+...+|+|-
T Consensus 185 HVld~~~~~~~~~i~ 199 (232)
T TIGR01252 185 HVLDYIIDNGTLEIG 199 (232)
T ss_pred ceeEEEeeeeEEEEe
Confidence 999888875555553
No 10
>COG1777 Predicted transcriptional regulators [Transcription]
Probab=47.10 E-value=8 Score=37.54 Aligned_cols=15 Identities=53% Similarity=0.729 Sum_probs=11.4
Q ss_pred ccccCCCCCCCCCCC
Q 016976 80 AKKKRGRPRKYGTPE 94 (379)
Q Consensus 80 ~KkKRGRPRKYg~~~ 94 (379)
-|.+|||||||=-..
T Consensus 63 e~~~Rg~~rKYY~Is 77 (217)
T COG1777 63 EKIPRGRPRKYYMIS 77 (217)
T ss_pred cccccCCCcceeecc
Confidence 477789999996443
No 11
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=41.10 E-value=1.3e+02 Score=23.84 Aligned_cols=42 Identities=17% Similarity=0.247 Sum_probs=33.6
Q ss_pred eeEEEEecCCCcHHHHHHHHHHHcC--ccEEEEEeeceeeeeEecC
Q 016976 154 TPHVISVAAGEDVGQKIMLFMQQSK--REICILSASGSISNASLRQ 197 (379)
Q Consensus 154 tphVIrL~~GEDIv~kI~~Faqq~~--~aicILSAiGAVSnVTLr~ 197 (379)
++-++.+.+|+-|-+.|..+|++++ ...|.|.-.| .+-.|-+
T Consensus 11 q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~--~~k~l~~ 54 (71)
T PF02196_consen 11 QRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVG--EKKPLDW 54 (71)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEE--EEEEE-T
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcC--CCccccC
Confidence 5678999999999999999999999 4688888888 5555554
No 12
>COG3527 AlsD Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=29.64 E-value=86 Score=30.98 Aligned_cols=99 Identities=19% Similarity=0.208 Sum_probs=58.5
Q ss_pred CCcHHHHHHHHHHHcCccEEEEEeeceeeeeEecCCCCCCC-------ceeeecceeEEEeeeee----ecCCCCC-ccc
Q 016976 163 GEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATSGG-------NITYEGRFEIVSLSGSY----VRTDLGG-RTG 230 (379)
Q Consensus 163 GEDIv~kI~~Faqq~~~aicILSAiGAVSnVTLr~~~~s~~-------tityeG~fEILSLsGni----s~~e~G~-~~~ 230 (379)
-||+.+.|..+..-.+. .+-+...|....|..|..-.+.. ...-.=-||.=...|+| .+..--+ -..
T Consensus 93 ~e~~~~~i~~~~~s~Nl-F~aiki~G~F~~v~~R~vp~q~~py~p~~e~~~~QPvf~~Env~GtiVGf~tP~~~~Gl~v~ 171 (234)
T COG3527 93 SEDVFSGISGTMDSENL-FYAIKITGIFKYVHVRMVPKQTPPYTPLAEVVKIQPVFEFENVKGTIVGFWTPEYFEGLAVA 171 (234)
T ss_pred HHHHHHHhhcccCCCce-EEEEEEeccccceEEEEEeccCCCCccHhhhhccCCceEEeecCceEEEecChHHhcccccC
Confidence 45888888888766654 45556777778888776532211 11112223333444444 3322111 122
Q ss_pred eeEEEEeCCCCcEEceecCCceeEeccEEEEEE
Q 016976 231 GLSVCLSSTDGQIIGGGVGGPLKAAGPVQVIVG 263 (379)
Q Consensus 231 HLHISLAd~DG~ViGGHL~G~lIAATtVeVVvg 263 (379)
+.|+-+. .|++.+||||..-.+.+++|||=..
T Consensus 172 GyHlHFi-tDdrtfGGHV~D~~~~~~~veI~~~ 203 (234)
T COG3527 172 GYHLHFI-TDDRTFGGHVLDFEIENGEVEIGAI 203 (234)
T ss_pred ceEEEEe-ecCccccceEEEEEeeeEEEEEeee
Confidence 3344444 6789999999999999988888544
No 13
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=29.59 E-value=1.4e+02 Score=24.58 Aligned_cols=43 Identities=16% Similarity=0.131 Sum_probs=33.4
Q ss_pred eEEEEecCCCcHHHHHHHHHHHcCc--cEEEEEeeceeeeeEecC
Q 016976 155 PHVISVAAGEDVGQKIMLFMQQSKR--EICILSASGSISNASLRQ 197 (379)
Q Consensus 155 phVIrL~~GEDIv~kI~~Faqq~~~--aicILSAiGAVSnVTLr~ 197 (379)
.-++.+.+|+-|.+.|+..|++++. +.|.|.-.|.=.-+.+.+
T Consensus 11 ~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~~k~l~~~q 55 (73)
T cd01817 11 TTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGGDKPLVLDQ 55 (73)
T ss_pred eEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecCCcccccCC
Confidence 4578999999999999999999994 577777766554444444
No 14
>smart00455 RBD Raf-like Ras-binding domain.
Probab=26.64 E-value=2e+02 Score=22.77 Aligned_cols=35 Identities=20% Similarity=0.412 Sum_probs=30.1
Q ss_pred eeEEEEecCCCcHHHHHHHHHHHcCc--cEEEEEeec
Q 016976 154 TPHVISVAAGEDVGQKIMLFMQQSKR--EICILSASG 188 (379)
Q Consensus 154 tphVIrL~~GEDIv~kI~~Faqq~~~--aicILSAiG 188 (379)
+...+.+.+|+-|.+.|...|++++. ..|.|.-.|
T Consensus 10 ~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 10 QRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 56789999999999999999999994 567777666
No 15
>PF13737 DDE_Tnp_1_5: Transposase DDE domain
Probab=25.54 E-value=34 Score=29.91 Aligned_cols=14 Identities=50% Similarity=1.101 Sum_probs=11.7
Q ss_pred ccccccCCCCCCCC
Q 016976 78 EPAKKKRGRPRKYG 91 (379)
Q Consensus 78 ~~~KkKRGRPRKYg 91 (379)
++...|||||++|-
T Consensus 21 ~~~~~kRGr~~~yS 34 (112)
T PF13737_consen 21 APPRGKRGRPPRYS 34 (112)
T ss_pred cCCCCCCCCCcccc
Confidence 45678999999994
No 16
>KOG4565 consensus E93 protein involved in programmed cell death, putative transcription regulator [Transcription]
Probab=23.18 E-value=27 Score=33.34 Aligned_cols=14 Identities=50% Similarity=0.864 Sum_probs=11.8
Q ss_pred cccccCCCCCCCCC
Q 016976 79 PAKKKRGRPRKYGT 92 (379)
Q Consensus 79 ~~KkKRGRPRKYg~ 92 (379)
.-+|||||=|+|..
T Consensus 111 qpRkKRGrYRqYd~ 124 (206)
T KOG4565|consen 111 QPRKKRGRYRQYDK 124 (206)
T ss_pred CccccccchhhhhH
Confidence 45899999999964
Done!