Query 016976
Match_columns 379
No_of_seqs 231 out of 542
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 06:54:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016976.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016976hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3htn_A Putative DNA binding pr 99.9 1E-27 3.5E-32 209.5 11.1 124 139-267 4-130 (149)
2 2dt4_A Hypothetical protein PH 99.9 1.3E-27 4.4E-32 206.7 11.0 112 154-268 10-124 (143)
3 2p6y_A Hypothetical protein VC 99.9 2.8E-26 9.7E-31 198.8 16.2 111 152-268 1-112 (142)
4 2h6l_A Hypothetical protein; N 99.9 5.2E-27 1.8E-31 203.5 10.8 111 154-268 10-123 (146)
5 2hx0_A Putative DNA-binding pr 99.9 4.1E-26 1.4E-30 200.4 16.4 114 149-268 14-128 (154)
6 3hwu_A Putative DNA-binding pr 99.9 1.8E-25 6.1E-30 194.8 12.0 112 154-267 13-127 (147)
7 5gds_I Hirunorm V; serine prot 71.9 1.7 5.9E-05 28.1 1.6 19 361-379 4-22 (26)
8 1xv2_A ALDC, hypothetical prot 61.9 18 0.00061 33.9 7.0 93 165-260 98-202 (237)
9 4dyq_A Gene 1 protein; GP1, oc 59.8 2.3 7.8E-05 35.9 0.5 13 80-92 3-15 (140)
10 1t3g_A X-linked interleukin-1 30.2 33 0.0011 29.4 3.1 37 151-187 40-78 (159)
11 1ihs_I Hirutonin; hydrolase(se 24.8 29 0.001 22.4 1.3 13 366-378 4-16 (26)
12 1fyx_A TOLL-like receptor 2; b 24.2 42 0.0014 28.2 2.6 37 151-187 33-71 (149)
13 2j67_A TOLL like receptor 10; 21.5 47 0.0016 29.1 2.5 37 151-187 63-101 (178)
No 1
>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0
Probab=99.95 E-value=1e-27 Score=209.54 Aligned_cols=124 Identities=14% Similarity=0.218 Sum_probs=107.3
Q ss_pred CCcccccCCCCCCCceeEEEEecCCCcHHHHHHHHHHHcCccEEEEEeeceeeeeEecCCCCC---CCceeeecceeEEE
Q 016976 139 GKSQLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATS---GGNITYEGRFEIVS 215 (379)
Q Consensus 139 ~K~ql~~lg~~g~~ftphVIrL~~GEDIv~kI~~Faqq~~~aicILSAiGAVSnVTLr~~~~s---~~tityeG~fEILS 215 (379)
+++++......| +.|++||++||||+++|.+||+++++..|+|+++|+|++|+|++++.+ |..++|+|+|||+|
T Consensus 4 ~~~~~~~y~~~g---r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EI~s 80 (149)
T 3htn_A 4 NEKNMYSYKKIG---NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISN 80 (149)
T ss_dssp ---CCEEEEEET---TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTCCEEEEEECSCEEEEE
T ss_pred CcccEEEEeecC---CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcccceeEEecCceEEEE
Confidence 344444444444 899999999999999999999999999888899999999999998764 45789999999999
Q ss_pred eeeeeecCCCCCccceeEEEEeCCCCcEEceecCCceeEeccEEEEEEEccc
Q 016976 216 LSGSYVRTDLGGRTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVIVGTFQV 267 (379)
Q Consensus 216 LsGnis~~e~G~~~~HLHISLAd~DG~ViGGHL~G~lIAATtVeVVvgSF~~ 267 (379)
|+|||++. +|+++.||||+|+|+||+|+||||..+.| ..++||+|..+..
T Consensus 81 l~Gti~~~-dG~p~~HlH~sl~~~~G~v~gGHl~~g~V-~~t~Ei~i~~~~~ 130 (149)
T 3htn_A 81 LTGNISSM-NEQVYLHLHITVGRSDYSALAGHLLSAIQ-NGAGEFVVEDYSE 130 (149)
T ss_dssp EEEEEEEE-TTEEEEEEEEEEECTTSBEEEEEEEEEEE-EEEEEEEEEECCS
T ss_pred eEEEEEcc-CCCceEEEEEEEECCCCCEEeEEeCCCEE-EEEEEEEEEEcCC
Confidence 99999997 57899999999999999999999998755 4789999998866
No 2
>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}
Probab=99.95 E-value=1.3e-27 Score=206.69 Aligned_cols=112 Identities=20% Similarity=0.266 Sum_probs=102.5
Q ss_pred eeEEEEecCCCcHHHHHHHHHHHcCccEEEEEeeceeeeeEecCCCCC---CCceeeecceeEEEeeeeeecCCCCCccc
Q 016976 154 TPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATS---GGNITYEGRFEIVSLSGSYVRTDLGGRTG 230 (379)
Q Consensus 154 tphVIrL~~GEDIv~kI~~Faqq~~~aicILSAiGAVSnVTLr~~~~s---~~tityeG~fEILSLsGnis~~e~G~~~~ 230 (379)
++|++||++||||+++|++||+++++..|+|+++|+|++|+|+|++.+ |..++++|+|||+||+|||++. +|+++.
T Consensus 10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~-~g~p~~ 88 (143)
T 2dt4_A 10 RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLK-DGEPFV 88 (143)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEE-TTEEEE
T ss_pred CEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECC-CCCcee
Confidence 799999999999999999999999988888899999999999999765 3478999999999999999996 478999
Q ss_pred eeEEEEeCCCCcEEceecCCceeEeccEEEEEEEcccc
Q 016976 231 GLSVCLSSTDGQIIGGGVGGPLKAAGPVQVIVGTFQVE 268 (379)
Q Consensus 231 HLHISLAd~DG~ViGGHL~G~lIAATtVeVVvgSF~~~ 268 (379)
||||+|+|+||+++||||..++ .+ ++||+|.+|...
T Consensus 89 HlHi~l~~~~G~v~GGHl~~g~-v~-t~Ev~i~~~~~~ 124 (143)
T 2dt4_A 89 HAHVSLGNEEGIVFGGHLVEGE-VF-VAEIFLQELKGE 124 (143)
T ss_dssp EEEEEEECTTSCEEEEEEEEEE-EE-EEEEEEEEEEES
T ss_pred eEEEEEECCCCCEeCCCCCCCc-eE-EEEEEEEEcCCC
Confidence 9999999999999999999777 44 899999998774
No 3
>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}
Probab=99.94 E-value=2.8e-26 Score=198.80 Aligned_cols=111 Identities=20% Similarity=0.314 Sum_probs=99.5
Q ss_pred CceeEEEEecCCCcHHHHHHHHHHHcCc-cEEEEEeeceeeeeEecCCCCCCCceeeecceeEEEeeeeeecCCCCCccc
Q 016976 152 GFTPHVISVAAGEDVGQKIMLFMQQSKR-EICILSASGSISNASLRQPATSGGNITYEGRFEIVSLSGSYVRTDLGGRTG 230 (379)
Q Consensus 152 ~ftphVIrL~~GEDIv~kI~~Faqq~~~-aicILSAiGAVSnVTLr~~~~s~~tityeG~fEILSLsGnis~~e~G~~~~ 230 (379)
.|++|++||++||||+++|.+||+++++ ++||++++|+|++|+||+|+... .++++|+|||+||+|||+++ ..
T Consensus 1 ~~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~-----~~ 74 (142)
T 2p6y_A 1 MIHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVS-TLQVSAPFEILSLSGTLTYQ-----HC 74 (142)
T ss_dssp CCEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSSC-EEEECSCEEEEEEEEEECSS-----CE
T ss_pred CCcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCCc-cEecCCcEEEEEeEEEEeCC-----CC
Confidence 3899999999999999999999999996 68888999999999999998754 68899999999999999984 37
Q ss_pred eeEEEEeCCCCcEEceecCCceeEeccEEEEEEEcccc
Q 016976 231 GLSVCLSSTDGQIIGGGVGGPLKAAGPVQVIVGTFQVE 268 (379)
Q Consensus 231 HLHISLAd~DG~ViGGHL~G~lIAATtVeVVvgSF~~~ 268 (379)
||||+|+|+||+++||||+..++...++||+|..|...
T Consensus 75 HlHisl~~~~G~v~GGHl~~g~~V~~t~Ev~i~~~~~~ 112 (142)
T 2p6y_A 75 HLHIAVADAQGRVWGGHLLEGNLINTTAELMIHHYPQH 112 (142)
T ss_dssp EEEEEEECTTSCEEEEEECTTCEECC-EEEEEEECTTE
T ss_pred EEEEEEECCCCCEEccccCCCCeEEEEEEEEEEEccCC
Confidence 99999999999999999996455568999999998774
No 4
>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3
Probab=99.94 E-value=5.2e-27 Score=203.48 Aligned_cols=111 Identities=21% Similarity=0.221 Sum_probs=102.2
Q ss_pred eeEEEEecCCCcHHHHHHHHHHHcCccEEEEEeeceeeeeEecCCCCCC---CceeeecceeEEEeeeeeecCCCCCccc
Q 016976 154 TPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATSG---GNITYEGRFEIVSLSGSYVRTDLGGRTG 230 (379)
Q Consensus 154 tphVIrL~~GEDIv~kI~~Faqq~~~aicILSAiGAVSnVTLr~~~~s~---~tityeG~fEILSLsGnis~~e~G~~~~ 230 (379)
++|+|||++||||+++|++||+++++..|+|+++|+|++|+|++++... ..++++|+|||+||+|||++. +|+++.
T Consensus 10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EIlsl~Gti~~~-dg~p~~ 88 (146)
T 2h6l_A 10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMK-DSKPFC 88 (146)
T ss_dssp EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEE-TTEEEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCCcceeEEEecCcEEEEEeEEEEECC-CCCcee
Confidence 6999999999999999999999999887777999999999999997754 478999999999999999996 478999
Q ss_pred eeEEEEeCCCCcEEceecCCceeEeccEEEEEEEcccc
Q 016976 231 GLSVCLSSTDGQIIGGGVGGPLKAAGPVQVIVGTFQVE 268 (379)
Q Consensus 231 HLHISLAd~DG~ViGGHL~G~lIAATtVeVVvgSF~~~ 268 (379)
||||+|+ .||+++||||+.++| .++||||.+|...
T Consensus 89 HlHi~l~-~~G~v~gGHl~~g~V--~t~Evvi~~~~~~ 123 (146)
T 2h6l_A 89 HIHVLLG-KDGEVYGGHLFSAEV--FACEVFVLPLSGE 123 (146)
T ss_dssp EEEEEEE-EBTEEEEEEEEEEEE--EEEEEEEEECBSC
T ss_pred eEEEEEC-CCCcEEeeecCCCEE--EEEEEEEEEcCCC
Confidence 9999999 999999999998886 5899999999874
No 5
>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A
Probab=99.94 E-value=4.1e-26 Score=200.38 Aligned_cols=114 Identities=20% Similarity=0.351 Sum_probs=102.3
Q ss_pred CCCCceeEEEEecCCCcHHHHHHHHHHHcCc-cEEEEEeeceeeeeEecCCCCCCCceeeecceeEEEeeeeeecCCCCC
Q 016976 149 LGQGFTPHVISVAAGEDVGQKIMLFMQQSKR-EICILSASGSISNASLRQPATSGGNITYEGRFEIVSLSGSYVRTDLGG 227 (379)
Q Consensus 149 ~g~~ftphVIrL~~GEDIv~kI~~Faqq~~~-aicILSAiGAVSnVTLr~~~~s~~tityeG~fEILSLsGnis~~e~G~ 227 (379)
....+++|+|||++||||+++|.+||+++++ ++||++++|+|++|+|||++... .++|+|+|||+||+|||++.
T Consensus 14 ~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~---- 88 (154)
T 2hx0_A 14 NASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSLTGTFEVISLNGTLELT---- 88 (154)
T ss_dssp SCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS-CEEEEEEEEEEEEEEEEETT----
T ss_pred CCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCCc-cEecCCcEEEEEeeeeEeCC----
Confidence 4567899999999999999999999999996 67888999999999999998755 78899999999999999985
Q ss_pred ccceeEEEEeCCCCcEEceecCCceeEeccEEEEEEEcccc
Q 016976 228 RTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVIVGTFQVE 268 (379)
Q Consensus 228 ~~~HLHISLAd~DG~ViGGHL~G~lIAATtVeVVvgSF~~~ 268 (379)
..||||+|+|.||+++||||+..+++..++||+|..|...
T Consensus 89 -~~HlHisl~~~~G~v~GGHL~~g~~V~~t~Ev~i~~~~~~ 128 (154)
T 2hx0_A 89 -GEHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPAL 128 (154)
T ss_dssp -EEEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEECTTE
T ss_pred -CCEEEEEEECCCCCEEccccCCCCcEEEEEEEEEEEccCc
Confidence 3799999999999999999997544447899999998764
No 6
>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}
Probab=99.92 E-value=1.8e-25 Score=194.77 Aligned_cols=112 Identities=17% Similarity=0.188 Sum_probs=101.5
Q ss_pred eeEEEEecCCCcHHHHHHHHHHHcCccEEEEEeeceeeeeEecCCCCC---CCceeeecceeEEEeeeeeecCCCCCccc
Q 016976 154 TPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATS---GGNITYEGRFEIVSLSGSYVRTDLGGRTG 230 (379)
Q Consensus 154 tphVIrL~~GEDIv~kI~~Faqq~~~aicILSAiGAVSnVTLr~~~~s---~~tityeG~fEILSLsGnis~~e~G~~~~ 230 (379)
+.+++||++||||+++|.+||+++++..++|++||++++|+|++++.+ |...+++ ++||+||+|||+..| |+++.
T Consensus 13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~~y~~~~~~-~~Ei~sl~Gtis~~d-G~p~~ 90 (147)
T 3hwu_A 13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYR-NVEMANMTGSIAWKE-GKPSI 90 (147)
T ss_dssp TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTTEEEEEEEE-EEEEEEEEEEEEEET-TEEEE
T ss_pred CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcCccccEEec-CcEEEEEEEEEEcCC-CCceE
Confidence 569999999999999999999999999999999999999999999765 3466788 899999999999865 78999
Q ss_pred eeEEEEeCCCCcEEceecCCceeEeccEEEEEEEccc
Q 016976 231 GLSVCLSSTDGQIIGGGVGGPLKAAGPVQVIVGTFQV 267 (379)
Q Consensus 231 HLHISLAd~DG~ViGGHL~G~lIAATtVeVVvgSF~~ 267 (379)
|||++|+|.||+++||||..+.|.+.++||||..+..
T Consensus 91 HlH~~~~d~~g~v~GGHL~~g~V~~~t~Ei~i~~~~~ 127 (147)
T 3hwu_A 91 HAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVYPQ 127 (147)
T ss_dssp EEEEEEECTTCCEEEEEEEEEEEEEEEEEEEEEEESS
T ss_pred EEEEEEECCCCcEEeeEecCcEEEeEeEEEEEEEcCC
Confidence 9999999999999999999887776689999987654
No 7
>5gds_I Hirunorm V; serine protease-inhibitor complex, thrombin, thrombin synthe inhibitors, antithrombotics, hirunorms; HET: CHG NAL ALC DGL NAG; 2.10A {Homo sapiens} PDB: 4thn_I*
Probab=71.92 E-value=1.7 Score=28.12 Aligned_cols=19 Identities=37% Similarity=0.669 Sum_probs=16.1
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 016976 361 TGRGGNQSPENGDYDQIAD 379 (379)
Q Consensus 361 ~~~~~~~s~~ng~y~~~~~ 379 (379)
|..|-.||-.+||||.||.
T Consensus 4 tdagkPqshn~gDfe~IPe 22 (26)
T 5gds_I 4 TDAGXPESHXGGDYEEIPA 22 (26)
T ss_pred ccCCCcccccCCCcccCcH
Confidence 4567789999999999993
No 8
>1xv2_A ALDC, hypothetical protein, similar to alpha- acetolactate decarboxylase; structural genomics, MCSG; 2.00A {Staphylococcus aureus subsp} SCOP: d.290.1.1
Probab=61.89 E-value=18 Score=33.88 Aligned_cols=93 Identities=13% Similarity=0.100 Sum_probs=55.2
Q ss_pred cHHHHHHHHHHHcCccEEEEEeeceeeeeEecCCCCC---CC----ceeeecceeEEEeeeeee----cCC-CCCcccee
Q 016976 165 DVGQKIMLFMQQSKREICILSASGSISNASLRQPATS---GG----NITYEGRFEIVSLSGSYV----RTD-LGGRTGGL 232 (379)
Q Consensus 165 DIv~kI~~Faqq~~~aicILSAiGAVSnVTLr~~~~s---~~----tityeG~fEILSLsGnis----~~e-~G~~~~HL 232 (379)
+|-+.|.+.. .....|-|-.-|.++.|+.|---.. |. .+.-+-.|++-.+.|+|. +.- .|--..++
T Consensus 98 ~l~~~i~~~~--s~N~f~airi~G~F~~v~~R~vp~Q~~Py~~l~e~~~~Q~~f~~~~v~GTivGF~tP~~~~Gi~v~G~ 175 (237)
T 1xv2_A 98 VFAQIKNEML--SENLFSAVKIYGTFKHMHVRMMPAQQPPYTRLIDSARRQPEEKRQDIRGAIVGFFTPELFHGVGSAGF 175 (237)
T ss_dssp HHHHHHHHSS--CTTSCEEEEEEEEEEEEEEECCCCCCSSCCCTHHHHTTCCEEEEEEEEEEEEEEEECGGGBTTBCSEE
T ss_pred HHHHHHHhhh--ccccEEEEEEEEEeCeEEEEecCCCCCCCCCHHHHhcCCceEEEeccEEEEEEEecchhhcccCCcee
Confidence 3333444433 3456788899999999999975322 11 111223466666666654 432 22233455
Q ss_pred EEEEeCCCCcEEceecCCceeEeccEEE
Q 016976 233 SVCLSSTDGQIIGGGVGGPLKAAGPVQV 260 (379)
Q Consensus 233 HISLAd~DG~ViGGHL~G~lIAATtVeV 260 (379)
|+-+-+.|-+ +||||.+..+...+++|
T Consensus 176 HlHFisdDr~-~GGHVldf~~~~~~~~~ 202 (237)
T 1xv2_A 176 HIHFADDERA-YGGHVLDFEVDDVVVEI 202 (237)
T ss_dssp EEEEEETTSS-CEEEEEEEEEEEEEEEE
T ss_pred EEEEEcCCCC-CCcceEEEEecceEEEE
Confidence 5556655544 79999988887666666
No 9
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=59.80 E-value=2.3 Score=35.90 Aligned_cols=13 Identities=38% Similarity=0.703 Sum_probs=4.9
Q ss_pred ccccCCCCCCCCC
Q 016976 80 AKKKRGRPRKYGT 92 (379)
Q Consensus 80 ~KkKRGRPRKYg~ 92 (379)
.|+|+|||.||-+
T Consensus 3 ~~~k~GRPtk~t~ 15 (140)
T 4dyq_A 3 TEPKAGRPSDYMP 15 (140)
T ss_dssp -------CCSCCT
T ss_pred CCCCCCCCCCCCH
Confidence 4899999999953
No 10
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=30.24 E-value=33 Score=29.37 Aligned_cols=37 Identities=16% Similarity=0.255 Sum_probs=28.9
Q ss_pred CCceeEEE--EecCCCcHHHHHHHHHHHcCccEEEEEee
Q 016976 151 QGFTPHVI--SVAAGEDVGQKIMLFMQQSKREICILSAS 187 (379)
Q Consensus 151 ~~ftphVI--rL~~GEDIv~kI~~Faqq~~~aicILSAi 187 (379)
.+++..+- .+.+|++|++.|.+..++-.+.++|||-.
T Consensus 40 ~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~ 78 (159)
T 1t3g_A 40 YGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPN 78 (159)
T ss_dssp SCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHH
T ss_pred CCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccc
Confidence 34554332 26799999999999999999999999853
No 11
>1ihs_I Hirutonin; hydrolase(serine proteinase), hydrolase-hydrolase inhibitor; HET: DPN OPR; 2.00A {Homo sapiens}
Probab=24.82 E-value=29 Score=22.39 Aligned_cols=13 Identities=38% Similarity=0.813 Sum_probs=11.5
Q ss_pred CCCCCCCCCCCCC
Q 016976 366 NQSPENGDYDQIA 378 (379)
Q Consensus 366 ~~s~~ng~y~~~~ 378 (379)
.||-.+||+|.||
T Consensus 4 Pqshn~gDFe~IP 16 (26)
T 1ihs_I 4 XQSHNDGDFEEIP 16 (26)
T ss_pred cccCCCCCCCcCC
Confidence 5788899999998
No 12
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=24.24 E-value=42 Score=28.18 Aligned_cols=37 Identities=16% Similarity=0.245 Sum_probs=30.0
Q ss_pred CCceeEEE--EecCCCcHHHHHHHHHHHcCccEEEEEee
Q 016976 151 QGFTPHVI--SVAAGEDVGQKIMLFMQQSKREICILSAS 187 (379)
Q Consensus 151 ~~ftphVI--rL~~GEDIv~kI~~Faqq~~~aicILSAi 187 (379)
.+++..+= .+.+|++|.+.|.+..++-.+.++|||-.
T Consensus 33 ~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~ 71 (149)
T 1fyx_A 33 PPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSEN 71 (149)
T ss_dssp SCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHH
T ss_pred CCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcc
Confidence 35655542 37899999999999999999999999864
No 13
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=21.51 E-value=47 Score=29.06 Aligned_cols=37 Identities=19% Similarity=0.377 Sum_probs=29.2
Q ss_pred CCceeEEE--EecCCCcHHHHHHHHHHHcCccEEEEEee
Q 016976 151 QGFTPHVI--SVAAGEDVGQKIMLFMQQSKREICILSAS 187 (379)
Q Consensus 151 ~~ftphVI--rL~~GEDIv~kI~~Faqq~~~aicILSAi 187 (379)
.+++..+- .+.+|++|.+.|.+..++-.+.++|||-.
T Consensus 63 ~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~ 101 (178)
T 2j67_A 63 GSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPN 101 (178)
T ss_dssp -CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHH
T ss_pred CCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEeccc
Confidence 45655542 37799999999999999988999999864
Done!