Query 016976
Match_columns 379
No_of_seqs 231 out of 542
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 06:54:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016976.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016976hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2hx0a1 d.290.1.3 (A:6-141) Hy 99.9 6.5E-27 4.7E-31 199.7 15.7 113 150-268 3-116 (136)
2 d2h6la1 d.290.1.3 (A:1-138) Hy 99.9 1.1E-25 8.1E-30 190.9 11.1 113 154-270 10-125 (138)
3 d1xv2a_ d.290.1.1 (A:) Hypothe 57.4 15 0.0011 32.1 7.8 81 179-260 105-197 (232)
4 d1wxma1 d.15.1.5 (A:8-80) A-Ra 25.6 59 0.0043 23.5 5.3 32 155-186 12-45 (73)
5 d1c1yb_ d.15.1.5 (B:) c-Raf1 R 23.2 42 0.0031 24.6 4.1 34 155-188 13-48 (77)
6 d1khia2 b.40.4.5 (A:103-173) C 21.7 34 0.0025 25.0 3.3 36 154-189 23-60 (71)
7 d4htci_ g.3.15.2 (I:) Hirudin 18.3 23 0.0017 25.5 1.6 15 365-379 47-61 (65)
8 d1un8a4 c.119.1.2 (A:1-335) Di 14.8 14 0.001 34.1 -0.4 79 158-240 228-311 (335)
9 d1x6oa2 b.40.4.5 (A:87-165) C- 14.4 37 0.0027 25.3 2.0 32 158-189 36-68 (79)
10 d1qy9a2 d.21.1.2 (A:130-297) H 10.2 1.7E+02 0.012 22.7 4.9 51 151-201 30-87 (168)
No 1
>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]}
Probab=99.94 E-value=6.5e-27 Score=199.71 Aligned_cols=113 Identities=20% Similarity=0.363 Sum_probs=103.7
Q ss_pred CCCceeEEEEecCCCcHHHHHHHHHHHcCc-cEEEEEeeceeeeeEecCCCCCCCceeeecceeEEEeeeeeecCCCCCc
Q 016976 150 GQGFTPHVISVAAGEDVGQKIMLFMQQSKR-EICILSASGSISNASLRQPATSGGNITYEGRFEIVSLSGSYVRTDLGGR 228 (379)
Q Consensus 150 g~~ftphVIrL~~GEDIv~kI~~Faqq~~~-aicILSAiGAVSnVTLr~~~~s~~tityeG~fEILSLsGnis~~e~G~~ 228 (379)
++..|.|++||++||||+++|++||+++++ ++||++++|++++|+|++|+. .....++|+|||+||+|||...+
T Consensus 3 ~~~~R~~~lrl~~Gedl~~~i~~~~~~~~I~~a~V~~~iGs~~~~~~~~~~~-~~~~~~~g~~Ei~sl~G~I~~~~---- 77 (136)
T d2hx0a1 3 ASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQ-EATTSLTGTFEVISLNGTLELTG---- 77 (136)
T ss_dssp CCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTC-SSCEEEEEEEEEEEEEEEEETTE----
T ss_pred CCCCcEEEEEECCCChHHHHHHHHHHHhCCCEEEEEEEeeeeEEEEEEeCCC-CCcEEecCcEEEEEEEEEeccCC----
Confidence 567899999999999999999999999995 788999999999999999975 45668999999999999999876
Q ss_pred cceeEEEEeCCCCcEEceecCCceeEeccEEEEEEEcccc
Q 016976 229 TGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVIVGTFQVE 268 (379)
Q Consensus 229 ~~HLHISLAd~DG~ViGGHL~G~lIAATtVeVVvgSF~~~ 268 (379)
.|||++|+|.||+++||||++++++++++||||.+|...
T Consensus 78 -~HlH~~~a~~~g~v~gGhL~~g~~v~~t~Eivi~~l~~~ 116 (136)
T d2hx0a1 78 -EHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPAL 116 (136)
T ss_dssp -EEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEECTTE
T ss_pred -CeEEEEEECCCCcEEeEEecCCcEEEEEEEEEEEEccCC
Confidence 499999999999999999998888888999999999764
No 2
>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.92 E-value=1.1e-25 Score=190.93 Aligned_cols=113 Identities=22% Similarity=0.245 Sum_probs=101.6
Q ss_pred eeEEEEecCCCcHHHHHHHHHHHcCccEEEEEeeceeeeeEecCCCCC---CCceeeecceeEEEeeeeeecCCCCCccc
Q 016976 154 TPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATS---GGNITYEGRFEIVSLSGSYVRTDLGGRTG 230 (379)
Q Consensus 154 tphVIrL~~GEDIv~kI~~Faqq~~~aicILSAiGAVSnVTLr~~~~s---~~tityeG~fEILSLsGnis~~e~G~~~~ 230 (379)
|.|++||++||||+++|++||+++++.+|+|+++|++++|+|++++.. |..+.++|++||+||+|||...+ ++++.
T Consensus 10 r~~~~rl~~Gedl~~~l~~~~~~~~i~~a~is~iG~~~~~~l~~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~-g~p~~ 88 (138)
T d2h6la1 10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKD-SKPFC 88 (138)
T ss_dssp EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEET-TEEEE
T ss_pred CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEeecccceEEEecCCCCccceEecCCCEEEEEeEEEEEcCC-CCcEE
Confidence 789999999999999999999999999999999999999999998665 55789999999999999999876 68999
Q ss_pred eeEEEEeCCCCcEEceecCCceeEeccEEEEEEEcccccc
Q 016976 231 GLSVCLSSTDGQIIGGGVGGPLKAAGPVQVIVGTFQVESM 270 (379)
Q Consensus 231 HLHISLAd~DG~ViGGHL~G~lIAATtVeVVvgSF~~~~~ 270 (379)
|+|+++++ ||+++||||..+++++ +|+++.+|.....
T Consensus 89 HlH~~~~~-~g~~~gGHl~~~~v~~--~e~~i~~~~~~~~ 125 (138)
T d2h6la1 89 HIHVLLGK-DGEVYGGHLFSAEVFA--CEVFVLPLSGEAP 125 (138)
T ss_dssp EEEEEEEE-BTEEEEEEEEEEEEEE--EEEEEEECBSCCC
T ss_pred EEEEEECC-CCCEEEEEeCccEEEE--EEEEEEEecCCce
Confidence 99999997 7999999999887764 6888888766543
No 3
>d1xv2a_ d.290.1.1 (A:) Hypothetical protein SA2394 {Staphylococcus aureus [TaxId: 1280]}
Probab=57.43 E-value=15 Score=32.07 Aligned_cols=81 Identities=12% Similarity=0.150 Sum_probs=49.2
Q ss_pred ccEEEEEeeceeeeeEecCCCC-C--CC----ceeeecceeEEEeeeeee----cCCCCC-ccceeEEEEeCCCCcEEce
Q 016976 179 REICILSASGSISNASLRQPAT-S--GG----NITYEGRFEIVSLSGSYV----RTDLGG-RTGGLSVCLSSTDGQIIGG 246 (379)
Q Consensus 179 ~aicILSAiGAVSnVTLr~~~~-s--~~----tityeG~fEILSLsGnis----~~e~G~-~~~HLHISLAd~DG~ViGG 246 (379)
...+-|-.-|..+.|++|--.. + |. .+.-+-.||.-.+.|++. +.--.+ -...+|+-+-+.| +.+||
T Consensus 105 N~f~airi~G~F~~v~~R~vp~q~~py~~l~e~~~~Q~~f~~~~v~GtlvGF~sP~~~~gi~v~G~HlHFis~D-r~~GG 183 (232)
T d1xv2a_ 105 NLFSAVKIYGTFKHMHVRMMPAQQPPYTRLIDSARRQPEEKRQDIRGAIVGFFTPELFHGVGSAGFHIHFADDE-RAYGG 183 (232)
T ss_dssp TSCEEEEEEEEEEEEEEECCCCCCSSCCCTHHHHTTCCEEEEEEEEEEEEEEEECGGGBTTBCSEEEEEEEETT-SSCEE
T ss_pred cceEEEEEEEEeeeEEEEeecCCCCCCCCHHHHhccCceEEecccEEEEEEEecccccccccCCcEEEEEECCC-CCCCC
Confidence 4588999999999999996532 2 21 122245667777777654 322212 2234555566555 45699
Q ss_pred ecCCceeEeccEEE
Q 016976 247 GVGGPLKAAGPVQV 260 (379)
Q Consensus 247 HL~G~lIAATtVeV 260 (379)
||.+..+-...++|
T Consensus 184 HVld~~~~~~~~~~ 197 (232)
T d1xv2a_ 184 HVLDFEVDDVVVEI 197 (232)
T ss_dssp EEEEEEEEEEEEEE
T ss_pred ceeEEEeeeEEEEE
Confidence 99987775444443
No 4
>d1wxma1 d.15.1.5 (A:8-80) A-Raf proto-oncogene serine/threonine-protein kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.59 E-value=59 Score=23.51 Aligned_cols=32 Identities=16% Similarity=0.262 Sum_probs=26.6
Q ss_pred eEEEEecCCCcHHHHHHHHHHHcCc--cEEEEEe
Q 016976 155 PHVISVAAGEDVGQKIMLFMQQSKR--EICILSA 186 (379)
Q Consensus 155 phVIrL~~GEDIv~kI~~Faqq~~~--aicILSA 186 (379)
.-++.+.+|+-|.+.|.+.|+++++ ..|.+--
T Consensus 12 ~T~V~vrpG~tir~~L~k~l~kRgl~~~~~~V~~ 45 (73)
T d1wxma1 12 RTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVYR 45 (73)
T ss_dssp EEEEECCSSCBSHHHHHHHHHTTTCCSSSEEEEE
T ss_pred eEEEEecCCCCHHHHHHHHHHHcCCCHHHEEEEE
Confidence 4578999999999999999999994 4666643
No 5
>d1c1yb_ d.15.1.5 (B:) c-Raf1 RBD {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.17 E-value=42 Score=24.57 Aligned_cols=34 Identities=18% Similarity=0.192 Sum_probs=28.2
Q ss_pred eEEEEecCCCcHHHHHHHHHHHcCc--cEEEEEeec
Q 016976 155 PHVISVAAGEDVGQKIMLFMQQSKR--EICILSASG 188 (379)
Q Consensus 155 phVIrL~~GEDIv~kI~~Faqq~~~--aicILSAiG 188 (379)
.-++.+.+|+-|.+.|.+.|+++++ ..|.|--+|
T Consensus 13 ~T~V~vrpG~tird~L~k~l~kRgl~~~~c~V~~~~ 48 (77)
T d1c1yb_ 13 RTVVNVRNGMSLHDCLMKALKVRGLQPECCAVFRLL 48 (77)
T ss_dssp EEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEEEEE
T ss_pred eEEEEecCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 4578999999999999999999994 577775553
No 6
>d1khia2 b.40.4.5 (A:103-173) C-terminal domain of eIF5a homologue (Hex1) {Filamentous fungi (Neurospora crassa) [TaxId: 5141]}
Probab=21.65 E-value=34 Score=24.95 Aligned_cols=36 Identities=8% Similarity=0.204 Sum_probs=28.3
Q ss_pred eeEEEEecCCCcHHHHHHHHHHHcC--ccEEEEEeece
Q 016976 154 TPHVISVAAGEDVGQKIMLFMQQSK--REICILSASGS 189 (379)
Q Consensus 154 tphVIrL~~GEDIv~kI~~Faqq~~--~aicILSAiGA 189 (379)
+--=|+|.+..||.++|.+-..... +.+.|+||.|-
T Consensus 23 ~keDlkv~~~~el~~~I~~~F~~gkd~v~VtV~samGe 60 (71)
T d1khia2 23 VKQNLPVIDQSSLWNRLQKAFESGRGSVRVLVVSDHGR 60 (71)
T ss_dssp EEEEEEBCCSTTHHHHHHHHHTTTGGGEEEEEEEETTE
T ss_pred ccccccCCChhHHHHHHHHHHHcCCCcEEEEEEccCCE
Confidence 4555787677799999999887765 46899999884
No 7
>d4htci_ g.3.15.2 (I:) Hirudin {Leech (Hirudo medicinalis) [TaxId: 6421]}
Probab=18.27 E-value=23 Score=25.46 Aligned_cols=15 Identities=33% Similarity=0.740 Sum_probs=13.3
Q ss_pred CCCCCCCCCCCCCCC
Q 016976 365 GNQSPENGDYDQIAD 379 (379)
Q Consensus 365 ~~~s~~ng~y~~~~~ 379 (379)
-.||-.+||||.|||
T Consensus 47 Kpqs~~~gDFeeIPe 61 (65)
T d4htci_ 47 KPESHNNGDFEEIPE 61 (65)
T ss_dssp CCCCCCCCCCCCCCG
T ss_pred CCcccCCCCcccCcH
Confidence 478999999999996
No 8
>d1un8a4 c.119.1.2 (A:1-335) Dihydroxyacetone kinase {Citrobacter freundii [TaxId: 546]}
Probab=14.81 E-value=14 Score=34.06 Aligned_cols=79 Identities=14% Similarity=0.122 Sum_probs=52.4
Q ss_pred EEecCCCcHHHHHHHHH-HH---cCccEEEEEeeceeeeeEecCCCCC-CCceeeecceeEEEeeeeeecCCCCCcccee
Q 016976 158 ISVAAGEDVGQKIMLFM-QQ---SKREICILSASGSISNASLRQPATS-GGNITYEGRFEIVSLSGSYVRTDLGGRTGGL 232 (379)
Q Consensus 158 IrL~~GEDIv~kI~~Fa-qq---~~~aicILSAiGAVSnVTLr~~~~s-~~tityeG~fEILSLsGnis~~e~G~~~~HL 232 (379)
+.+.+=++|++.|++.. .+ ...-+..|...|+++..+|.....+ ...+ .+..+.|..+.|+|.+.=+ +.++
T Consensus 228 ~~~~~a~eiv~~l~~~l~~~~~~gd~v~llVN~LG~ts~lEl~i~~~~v~~~L-~~~~i~v~~~~G~~~TSld---m~G~ 303 (335)
T d1un8a4 228 IDTQNSAQVVNLMVDKLLAALPETGRLAVMINNLGGVSVAEMAIITRELASSP-LHSRIDWLIGPASLVTALD---MKGF 303 (335)
T ss_dssp ESCCBHHHHHHHHHHHHHHHSCSSCCEEEEEEECBCSCHHHHHHHHHHHHTST-TGGGEEEEEEEECSSCCTT---BEEE
T ss_pred CCCCCHHHHHHHHHHHHhhccCCCCeEEEEEcCCCCCcHHHHHHHHHHHHHHH-HhcCCeEEEEeeeeeCccC---CCCe
Confidence 45666678888877643 33 2245777999999998887654322 1111 1233567788999988655 5689
Q ss_pred EEEEeCCC
Q 016976 233 SVCLSSTD 240 (379)
Q Consensus 233 HISLAd~D 240 (379)
+|+|..-|
T Consensus 304 SlTll~ld 311 (335)
T d1un8a4 304 SLTAIVLE 311 (335)
T ss_dssp EEEEEECC
T ss_pred EEEEEeCC
Confidence 99998554
No 9
>d1x6oa2 b.40.4.5 (A:87-165) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Leishmania infantum [TaxId: 5671]}
Probab=14.36 E-value=37 Score=25.27 Aligned_cols=32 Identities=16% Similarity=0.279 Sum_probs=25.0
Q ss_pred EEecCCCcHHHHHHHHHHHcC-ccEEEEEeece
Q 016976 158 ISVAAGEDVGQKIMLFMQQSK-REICILSASGS 189 (379)
Q Consensus 158 IrL~~GEDIv~kI~~Faqq~~-~aicILSAiGA 189 (379)
|+|++..||..+|.+-..++. .-+.||+|.|-
T Consensus 36 lkLP~d~elg~~I~~~f~~gkdl~VtVlsAmGE 68 (79)
T d1x6oa2 36 LDMPPDPALATQIKEQFDSGKDVLVVVVSAMGT 68 (79)
T ss_dssp CBCCSCHHHHHHHHHHHHTTCCEEEEEEEETTE
T ss_pred cCCCCchHHHHHHHHHHhCCCcEEEEEehhCCc
Confidence 567777899999998555544 78999999884
No 10
>d1qy9a2 d.21.1.2 (A:130-297) Hypothetical protein YddE {Escherichia coli [TaxId: 562]}
Probab=10.16 E-value=1.7e+02 Score=22.75 Aligned_cols=51 Identities=8% Similarity=0.071 Sum_probs=40.3
Q ss_pred CCceeEEEEecCCCcH------HHHHHHHHHHcC-ccEEEEEeeceeeeeEecCCCCC
Q 016976 151 QGFTPHVISVAAGEDV------GQKIMLFMQQSK-REICILSASGSISNASLRQPATS 201 (379)
Q Consensus 151 ~~ftphVIrL~~GEDI------v~kI~~Faqq~~-~aicILSAiGAVSnVTLr~~~~s 201 (379)
.+..-.+|.|+.=|+| .+.+.+|+++.+ ..+.+++..+.-..+..|+|...
T Consensus 30 ~G~~~~~v~v~~~~~l~~~~pd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~R~F~p~ 87 (168)
T d1qy9a2 30 TGHSKVMIPLKPEVDIDALSPDLNALTAISKKIGCNGFFPFQIRPGKNETDGRMFSPA 87 (168)
T ss_dssp SSSCEEEEEBCTTSCGGGCCCCHHHHHHHHHHHTCCCEEEEEECTTSSEEEECEEEGG
T ss_pred cCCCeEEEEECCHHHhhhcCCCHHHHHhhhhccCccEEEEEEecCCCCeEEEEeccCc
Confidence 4566678888887877 688999999988 56778888777778999998653
Done!