BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016977
(379 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q80VJ6|ZSC4C_MOUSE Zinc finger and SCAN domain containing protein 4C OS=Mus musculus
GN=Zscan4c PE=2 SV=1
Length = 506
Score = 36.2 bits (82), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 197 YVPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCR 238
++P FKC CE+ S ++ S ++ +G+MP V L R
Sbjct: 446 HMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSR 487
>sp|Q3URS2|ZSC4F_MOUSE Zinc finger and SCAN domain containing protein 4F OS=Mus musculus
GN=Zscan4f PE=2 SV=2
Length = 506
Score = 36.2 bits (82), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 197 YVPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCR 238
++P FKC CE+ S ++ S ++ +G+MP V L R
Sbjct: 446 HMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSR 487
>sp|A7KBS4|ZSC4D_MOUSE Zinc finger and SCAN domain containing protein 4D OS=Mus musculus
GN=Zscan4d PE=2 SV=1
Length = 506
Score = 35.8 bits (81), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 197 YVPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCR 238
++P FKC CE+ S ++ S ++ +G+MP V L R
Sbjct: 446 HMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSR 487
>sp|Q9FIR0|ATL30_ARATH RING-H2 finger protein ATL30 OS=Arabidopsis thaliana GN=ATL30 PE=2
SV=1
Length = 289
Score = 35.4 bits (80), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 4/38 (10%)
Query: 236 SCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEENSPD 273
+C HVFH EC++Q +S+ +CP+C R + N+P+
Sbjct: 133 TCYHVFHQECIDQWL----ESNKTCPVCRRNLDPNAPE 166
>sp|Q95QN6|YQOE_CAEEL Uncharacterized RING finger protein EEED8.16 OS=Caenorhabditis
elegans GN=EEED8.16 PE=4 SV=1
Length = 590
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 7/40 (17%)
Query: 228 DMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQ 267
D V+ +L C H FHA CLEQ +D +CP+C +Q
Sbjct: 268 DDSVLAIL-CNHSFHARCLEQW------ADNTCPVCRYVQ 300
>sp|Q1J736|DEOB_STRPF Phosphopentomutase OS=Streptococcus pyogenes serotype M4 (strain
MGAS10750) GN=deoB PE=3 SV=1
Length = 403
Score = 33.1 bits (74), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 22/106 (20%)
Query: 128 LSFMSKPIYPLSFPTQTSNREAIDSASTVLSEDDTSTPQWEAHRWSSASSSVDFADVSEP 187
L +S+PI + PT+ + + V DT T WE +++EP
Sbjct: 58 LGNISRPIPLKTIPTEDNPTGYVTKLEEVSLGKDTMTGHWEIMGL----------NITEP 107
Query: 188 FESESFGQSYVPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVG 233
F DTF G E L++ +S R+I+R + P G
Sbjct: 108 F------------DTFWNGFPEEILTKIEEFSGRKIIREANKPYSG 141
>sp|Q1JM72|DEOB_STRPC Phosphopentomutase OS=Streptococcus pyogenes serotype M12 (strain
MGAS9429) GN=deoB PE=3 SV=1
Length = 403
Score = 33.1 bits (74), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 22/106 (20%)
Query: 128 LSFMSKPIYPLSFPTQTSNREAIDSASTVLSEDDTSTPQWEAHRWSSASSSVDFADVSEP 187
L +S+PI + PT+ + + V DT T WE +++EP
Sbjct: 58 LGNISRPIPLKTIPTEDNPTGYVTKLEEVSLGKDTMTGHWEIMGL----------NITEP 107
Query: 188 FESESFGQSYVPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVG 233
F DTF G E L++ +S R+I+R + P G
Sbjct: 108 F------------DTFWNGFPEEILTKIEEFSGRKIIREANKPYSG 141
>sp|Q1JC88|DEOB_STRPB Phosphopentomutase OS=Streptococcus pyogenes serotype M12 (strain
MGAS2096) GN=deoB PE=3 SV=1
Length = 403
Score = 33.1 bits (74), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 22/106 (20%)
Query: 128 LSFMSKPIYPLSFPTQTSNREAIDSASTVLSEDDTSTPQWEAHRWSSASSSVDFADVSEP 187
L +S+PI + PT+ + + V DT T WE +++EP
Sbjct: 58 LGNISRPIPLKTIPTEDNPTGYVTKLEEVSLGKDTMTGHWEIMGL----------NITEP 107
Query: 188 FESESFGQSYVPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVG 233
F DTF G E L++ +S R+I+R + P G
Sbjct: 108 F------------DTFWNGFPEEILTKIEEFSGRKIIREANKPYSG 141
>sp|Q8P1C4|DEOB_STRP8 Phosphopentomutase OS=Streptococcus pyogenes serotype M18 (strain
MGAS8232) GN=deoB PE=3 SV=1
Length = 403
Score = 32.7 bits (73), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 22/106 (20%)
Query: 128 LSFMSKPIYPLSFPTQTSNREAIDSASTVLSEDDTSTPQWEAHRWSSASSSVDFADVSEP 187
L +S+PI + PT+ + + V DT T WE +++EP
Sbjct: 58 LGNISRPIPLKTVPTEDNPTGYVTKLEEVSLGKDTMTGHWEIMGL----------NITEP 107
Query: 188 FESESFGQSYVPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVG 233
F DTF G E L++ +S R+I+R + P G
Sbjct: 108 F------------DTFWNGFPEEILTKIEEFSGRKIIREANKPYSG 141
>sp|Q1JHB7|DEOB_STRPD Phosphopentomutase OS=Streptococcus pyogenes serotype M2 (strain
MGAS10270) GN=deoB PE=3 SV=1
Length = 403
Score = 32.7 bits (73), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 22/106 (20%)
Query: 128 LSFMSKPIYPLSFPTQTSNREAIDSASTVLSEDDTSTPQWEAHRWSSASSSVDFADVSEP 187
L +S+PI + PT+ + + V DT T WE +++EP
Sbjct: 58 LGNISRPIPLKTVPTEDNPTGYVTKLEEVSLGKDTMTGHWEIMGL----------NITEP 107
Query: 188 FESESFGQSYVPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVG 233
F DTF G E L++ +S R+I+R + P G
Sbjct: 108 F------------DTFWNGFPEEILTKIEEFSGRKIIREANKPYSG 141
>sp|A2RF12|DEOB_STRPG Phosphopentomutase OS=Streptococcus pyogenes serotype M5 (strain
Manfredo) GN=deoB PE=3 SV=1
Length = 403
Score = 32.7 bits (73), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 22/106 (20%)
Query: 128 LSFMSKPIYPLSFPTQTSNREAIDSASTVLSEDDTSTPQWEAHRWSSASSSVDFADVSEP 187
L +S+PI + PT+ + + V DT T WE +++EP
Sbjct: 58 LGNISRPIPLKTVPTEDNPTGYVTKLEEVSLGKDTMTGHWEIMGL----------NITEP 107
Query: 188 FESESFGQSYVPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVG 233
F DTF G E L++ +S R+I+R + P G
Sbjct: 108 F------------DTFWNGFPEEILTKIEEFSGRKIIREANKPYSG 141
>sp|Q48U17|DEOB_STRPM Phosphopentomutase OS=Streptococcus pyogenes serotype M28 (strain
MGAS6180) GN=deoB PE=3 SV=1
Length = 403
Score = 32.7 bits (73), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 60/155 (38%), Gaps = 34/155 (21%)
Query: 128 LSFMSKPIYPLSFPTQTSNREAIDSASTVLSEDDTSTPQWEAHRWSSASSSVDFADVSEP 187
L +S+PI + PT+ + + V DT T WE +++EP
Sbjct: 58 LGNISRPIPLKTVPTEDNPTGYVTKLEEVSLGKDTMTGHWEIMGL----------NITEP 107
Query: 188 FESESFGQSYVPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMP-----VVGVLSCRHVFH 242
F DTF G E L++ +S R+I+R + P V+ R +
Sbjct: 108 F------------DTFWNGFPEEILTKIEEFSGRKIIREANKPYSGTAVIDDFGSRQMET 155
Query: 243 AECLEQTTPKTQKSDPSCPICLRLQEENSPDQQVF 277
E + T+ +DP I E+ P ++++
Sbjct: 156 GELIVYTS-----ADPVLQIA--AHEDIIPVEELY 183
>sp|P87119|MU145_SCHPO RING finger protein mug145 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=mug145 PE=1 SV=1
Length = 309
Score = 32.7 bits (73), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Query: 231 VVGVLSCRHVFHAECLEQTTPKTQKSDPSCPIC 263
++ VL C HVFH +C++ T T K+ SCP+C
Sbjct: 217 ILRVLPCEHVFHTQCID-TWMTTMKA--SCPLC 246
>sp|P0DA61|DEOB_STRPQ Phosphopentomutase OS=Streptococcus pyogenes serotype M3 (strain
SSI-1) GN=deoB PE=3 SV=1
Length = 403
Score = 32.7 bits (73), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 22/106 (20%)
Query: 128 LSFMSKPIYPLSFPTQTSNREAIDSASTVLSEDDTSTPQWEAHRWSSASSSVDFADVSEP 187
L +S+PI + PT+ + + V DT T WE +++EP
Sbjct: 58 LGNISRPIPLKTVPTEDNPTGYVTKLEEVSLGKDTMTGHWEIMGL----------NITEP 107
Query: 188 FESESFGQSYVPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVG 233
F DTF G E L++ +S R+I+R + P G
Sbjct: 108 F------------DTFWNGFPEEILTKIEEFSGRKIIREANKPYSG 141
>sp|P0DA60|DEOB_STRP3 Phosphopentomutase OS=Streptococcus pyogenes serotype M3 (strain
ATCC BAA-595 / MGAS315) GN=deoB PE=3 SV=1
Length = 403
Score = 32.7 bits (73), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 22/106 (20%)
Query: 128 LSFMSKPIYPLSFPTQTSNREAIDSASTVLSEDDTSTPQWEAHRWSSASSSVDFADVSEP 187
L +S+PI + PT+ + + V DT T WE +++EP
Sbjct: 58 LGNISRPIPLKTVPTEDNPTGYVTKLEEVSLGKDTMTGHWEIMGL----------NITEP 107
Query: 188 FESESFGQSYVPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVG 233
F DTF G E L++ +S R+I+R + P G
Sbjct: 108 F------------DTFWNGFPEEILTKIEEFSGRKIIREANKPYSG 141
>sp|P63927|DEOB_STRP1 Phosphopentomutase OS=Streptococcus pyogenes serotype M1 GN=deoB
PE=3 SV=1
Length = 403
Score = 32.7 bits (73), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 22/106 (20%)
Query: 128 LSFMSKPIYPLSFPTQTSNREAIDSASTVLSEDDTSTPQWEAHRWSSASSSVDFADVSEP 187
L +S+PI + PT+ + + V DT T WE +++EP
Sbjct: 58 LGNISRPIPLKTVPTEDNPTGYVTKLEEVSLGKDTMTGHWEIMGL----------NITEP 107
Query: 188 FESESFGQSYVPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVG 233
F DTF G E L++ +S R+I+R + P G
Sbjct: 108 F------------DTFWNGFPEEILTKIEEFSGRKIIREANKPYSG 141
>sp|Q5XCL5|DEOB_STRP6 Phosphopentomutase OS=Streptococcus pyogenes serotype M6 (strain
ATCC BAA-946 / MGAS10394) GN=deoB PE=3 SV=1
Length = 403
Score = 32.7 bits (73), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 22/106 (20%)
Query: 128 LSFMSKPIYPLSFPTQTSNREAIDSASTVLSEDDTSTPQWEAHRWSSASSSVDFADVSEP 187
L +S+PI + PT+ + + V DT T WE +++EP
Sbjct: 58 LGNISRPIPLKTVPTEDNPTGYVTKLEEVSLGKDTMTGHWEIMGL----------NITEP 107
Query: 188 FESESFGQSYVPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVG 233
F DTF G E L++ +S R+I+R + P G
Sbjct: 108 F------------DTFWNGFPEEILTKIEEFSGRKIIREANKPYSG 141
>sp|Q9VE61|RN181_DROME E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila
melanogaster GN=CG7694 PE=2 SV=1
Length = 147
Score = 32.3 bits (72), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 11/64 (17%)
Query: 234 VLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEENSPDQQVFSRLKNSFPRLRQSCDN 293
+L C+H FH EC+ KT SCP+C + E D V+ L+ R RQ N
Sbjct: 85 ILPCKHEFHEECILLWLKKTN----SCPLC---RYELETDDPVYEELR----RFRQDEAN 133
Query: 294 GQSR 297
+ R
Sbjct: 134 RRER 137
>sp|Q9H0F5|RNF38_HUMAN RING finger protein 38 OS=Homo sapiens GN=RNF38 PE=1 SV=4
Length = 515
Score = 32.3 bits (72), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 12/46 (26%)
Query: 218 WSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPIC 263
+ SR+++R VL C H FHA+C++ K K++ +CPIC
Sbjct: 470 FESRQLLR--------VLPCNHEFHAKCVD----KWLKANRTCPIC 503
>sp|Q9ZU51|RHA2B_ARATH Probable E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana
GN=RHA2B PE=1 SV=2
Length = 147
Score = 32.3 bits (72), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 235 LSCRHVFHAECLEQTTPKTQKSDPSCPIC 263
L CRHVFH +CLE Q + +CP+C
Sbjct: 90 LDCRHVFHKQCLEGW---LQHLNFNCPLC 115
>sp|Q3UHJ8|RNF44_MOUSE RING finger protein 44 OS=Mus musculus GN=Rnf44 PE=2 SV=1
Length = 407
Score = 32.3 bits (72), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 4/33 (12%)
Query: 231 VVGVLSCRHVFHAECLEQTTPKTQKSDPSCPIC 263
++ VL C H FHA+C++ K K++ +CPIC
Sbjct: 367 LLRVLPCNHEFHAKCVD----KWLKANRTCPIC 395
>sp|Q08CG8|RNF44_DANRE RING finger protein 44 OS=Danio rerio GN=rnf44 PE=2 SV=1
Length = 448
Score = 32.0 bits (71), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 25/118 (21%)
Query: 152 SASTVLSEDDTSTPQWEA-----HRWSSAS-SSVDFADVSEPFESESFGQSYVPSDTFKC 205
+ S L DD +EA R A + AD+ E S F S+ C
Sbjct: 338 AISLDLDVDDVEMENYEALLNLAERLGEAKPRGLTKADI-EQLPSYRFNLENHQSEQTLC 396
Query: 206 GLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPIC 263
+C S + SR+++R VL C H FHA+C++ K K++ +CPIC
Sbjct: 397 VVC------FSDFESRQLLR--------VLPCNHEFHAKCVD----KWLKTNRTCPIC 436
>sp|Q8BI21|RNF38_MOUSE RING finger protein 38 OS=Mus musculus GN=Rnf38 PE=2 SV=1
Length = 518
Score = 31.6 bits (70), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 12/46 (26%)
Query: 218 WSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPIC 263
+ SR+++R VL C H FHA+C++ K K + +CPIC
Sbjct: 473 FESRQLLR--------VLPCNHEFHAKCVD----KWLKGNRTCPIC 506
>sp|Q4V7B8|RNF44_RAT RING finger protein 44 OS=Rattus norvegicus GN=Rnf44 PE=2 SV=1
Length = 350
Score = 31.6 bits (70), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 4/33 (12%)
Query: 231 VVGVLSCRHVFHAECLEQTTPKTQKSDPSCPIC 263
++ VL C H FHA+C++ K K++ +CPIC
Sbjct: 310 LLRVLPCNHEFHAKCVD----KWLKANRTCPIC 338
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.128 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 145,649,712
Number of Sequences: 539616
Number of extensions: 5877206
Number of successful extensions: 12925
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 125
Number of HSP's that attempted gapping in prelim test: 12558
Number of HSP's gapped (non-prelim): 394
length of query: 379
length of database: 191,569,459
effective HSP length: 119
effective length of query: 260
effective length of database: 127,355,155
effective search space: 33112340300
effective search space used: 33112340300
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)