Query 016977
Match_columns 379
No_of_seqs 195 out of 695
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 04:31:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016977.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016977hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13639 zf-RING_2: Ring finge 99.4 1.7E-13 3.7E-18 97.2 1.4 44 203-264 1-44 (44)
2 PF12678 zf-rbx1: RING-H2 zinc 99.3 7.5E-13 1.6E-17 104.4 2.9 56 201-264 18-73 (73)
3 KOG4628 Predicted E3 ubiquitin 99.2 3.5E-12 7.6E-17 126.9 2.6 51 203-270 230-280 (348)
4 PF12861 zf-Apc11: Anaphase-pr 99.2 3.3E-11 7.2E-16 99.3 4.9 64 201-269 20-83 (85)
5 COG5243 HRD1 HRD ubiquitin lig 99.1 7.1E-11 1.5E-15 118.9 2.9 76 180-268 270-345 (491)
6 COG5194 APC11 Component of SCF 98.9 8.2E-10 1.8E-14 90.9 4.0 63 202-269 20-82 (88)
7 PHA02929 N1R/p28-like protein; 98.9 5.5E-10 1.2E-14 106.4 3.3 56 201-269 173-228 (238)
8 cd00162 RING RING-finger (Real 98.9 1.8E-09 4E-14 72.9 3.1 45 204-267 1-45 (45)
9 COG5540 RING-finger-containing 98.8 1.1E-09 2.4E-14 108.1 2.3 51 201-268 322-372 (374)
10 KOG1493 Anaphase-promoting com 98.7 3.5E-09 7.5E-14 86.7 1.7 62 202-268 20-81 (84)
11 KOG0802 E3 ubiquitin ligase [P 98.7 4.6E-09 1E-13 108.8 2.4 53 200-268 289-341 (543)
12 smart00184 RING Ring finger. E 98.7 1.9E-08 4.1E-13 65.6 3.1 39 205-263 1-39 (39)
13 PF13923 zf-C3HC4_2: Zinc fing 98.6 8.5E-09 1.8E-13 71.8 1.3 39 205-263 1-39 (39)
14 KOG2930 SCF ubiquitin ligase, 98.6 1.2E-08 2.6E-13 87.5 1.6 65 200-268 44-108 (114)
15 PLN03208 E3 ubiquitin-protein 98.6 4.2E-08 9.2E-13 91.4 4.7 52 201-269 17-80 (193)
16 PF13920 zf-C3HC4_3: Zinc fing 98.5 6.5E-08 1.4E-12 70.5 1.8 46 202-268 2-48 (50)
17 PF15227 zf-C3HC4_4: zinc fing 98.5 9.7E-08 2.1E-12 68.6 2.6 42 205-263 1-42 (42)
18 PF00097 zf-C3HC4: Zinc finger 98.5 5.9E-08 1.3E-12 67.3 1.3 41 205-263 1-41 (41)
19 PF14634 zf-RING_5: zinc-RING 98.4 1.9E-07 4.1E-12 66.8 3.8 44 204-265 1-44 (44)
20 TIGR00599 rad18 DNA repair pro 98.4 1.9E-07 4.1E-12 94.9 3.9 49 200-269 24-72 (397)
21 KOG0320 Predicted E3 ubiquitin 98.4 3.4E-07 7.5E-12 84.8 4.2 51 200-269 129-179 (187)
22 smart00504 Ubox Modified RING 98.3 4.1E-07 8.8E-12 67.6 2.6 45 203-268 2-46 (63)
23 KOG1734 Predicted RING-contain 98.2 3.7E-07 8.1E-12 89.4 1.8 67 194-269 216-282 (328)
24 KOG0827 Predicted E3 ubiquitin 98.2 4.6E-07 1E-11 92.1 2.5 53 203-269 5-57 (465)
25 PHA02926 zinc finger-like prot 98.2 9.6E-07 2.1E-11 84.4 4.4 60 200-268 168-230 (242)
26 KOG0317 Predicted E3 ubiquitin 98.2 1E-06 2.2E-11 86.4 3.0 51 197-268 234-284 (293)
27 PF13445 zf-RING_UBOX: RING-ty 98.2 7.7E-07 1.7E-11 64.9 1.4 43 205-261 1-43 (43)
28 KOG0828 Predicted E3 ubiquitin 98.1 1.4E-06 3E-11 90.8 1.8 64 200-268 569-634 (636)
29 KOG0804 Cytoplasmic Zn-finger 98.0 3E-06 6.5E-11 87.4 2.3 50 200-268 173-222 (493)
30 smart00744 RINGv The RING-vari 98.0 6.7E-06 1.5E-10 61.0 3.3 44 204-264 1-49 (49)
31 KOG0823 Predicted E3 ubiquitin 97.8 9.4E-06 2E-10 77.6 2.8 54 198-269 43-96 (230)
32 KOG2177 Predicted E3 ubiquitin 97.8 1.1E-05 2.4E-10 70.2 2.4 45 200-265 11-55 (386)
33 TIGR00570 cdk7 CDK-activating 97.8 2E-05 4.3E-10 78.2 3.8 55 200-269 1-55 (309)
34 PF04564 U-box: U-box domain; 97.7 1.6E-05 3.5E-10 62.5 2.2 49 201-269 3-51 (73)
35 KOG0287 Postreplication repair 97.7 1.8E-05 3.9E-10 79.9 2.0 50 200-270 21-70 (442)
36 PF11793 FANCL_C: FANCL C-term 97.6 4.3E-06 9.3E-11 65.9 -2.4 57 202-269 2-67 (70)
37 COG5574 PEX10 RING-finger-cont 97.6 3.4E-05 7.3E-10 75.3 2.6 53 197-269 210-263 (271)
38 KOG2164 Predicted E3 ubiquitin 97.5 4.3E-05 9.2E-10 79.9 2.0 51 202-269 186-237 (513)
39 COG5219 Uncharacterized conser 97.5 4.3E-05 9.4E-10 84.7 1.8 57 200-268 1467-1523(1525)
40 KOG0825 PHD Zn-finger protein 97.5 2.7E-05 5.8E-10 85.0 0.0 53 200-270 121-173 (1134)
41 KOG1941 Acetylcholine receptor 97.4 4.9E-05 1.1E-09 77.9 1.5 54 200-268 363-416 (518)
42 KOG1645 RING-finger-containing 97.4 7.2E-05 1.6E-09 76.9 1.9 53 201-267 3-55 (463)
43 PF10367 Vps39_2: Vacuolar sor 97.2 8.8E-05 1.9E-09 59.7 0.3 33 200-247 76-108 (109)
44 COG5432 RAD18 RING-finger-cont 97.1 0.00027 5.9E-09 70.5 2.5 49 200-269 23-71 (391)
45 KOG0978 E3 ubiquitin ligase in 96.9 0.00033 7.2E-09 75.9 1.2 51 201-271 642-692 (698)
46 KOG0824 Predicted E3 ubiquitin 96.8 0.00087 1.9E-08 66.8 3.4 83 200-302 5-90 (324)
47 KOG4265 Predicted E3 ubiquitin 96.8 0.00086 1.9E-08 67.7 3.3 49 200-269 288-337 (349)
48 KOG1940 Zn-finger protein [Gen 96.5 0.0015 3.3E-08 64.2 2.6 50 201-268 157-206 (276)
49 PF11789 zf-Nse: Zinc-finger o 96.5 0.0012 2.7E-08 50.6 1.4 44 201-262 10-53 (57)
50 KOG2114 Vacuolar assembly/sort 96.2 0.0022 4.7E-08 70.9 1.8 50 196-268 834-883 (933)
51 KOG0311 Predicted E3 ubiquitin 96.2 0.0012 2.5E-08 67.1 -0.4 51 201-270 42-92 (381)
52 KOG1039 Predicted E3 ubiquitin 95.9 0.0034 7.5E-08 63.3 1.8 74 200-283 159-246 (344)
53 KOG4159 Predicted E3 ubiquitin 95.8 0.0038 8.2E-08 64.1 1.4 51 200-271 82-132 (398)
54 PF05883 Baculo_RING: Baculovi 95.7 0.0066 1.4E-07 54.4 2.5 36 201-250 25-66 (134)
55 KOG3039 Uncharacterized conser 95.6 0.0078 1.7E-07 59.1 2.6 53 200-269 219-271 (303)
56 KOG3970 Predicted E3 ubiquitin 95.5 0.011 2.4E-07 57.6 3.1 66 201-281 49-119 (299)
57 KOG1428 Inhibitor of type V ad 95.4 0.0084 1.8E-07 69.7 2.4 55 200-268 3484-3544(3738)
58 KOG4445 Uncharacterized conser 95.1 0.0073 1.6E-07 60.7 0.8 55 200-268 113-186 (368)
59 PF04641 Rtf2: Rtf2 RING-finge 95.1 0.014 3E-07 56.0 2.6 70 200-288 111-186 (260)
60 KOG2034 Vacuolar sorting prote 95.1 0.011 2.4E-07 65.8 2.0 37 200-251 815-851 (911)
61 KOG1785 Tyrosine kinase negati 95.1 0.01 2.2E-07 61.7 1.6 50 200-268 367-416 (563)
62 KOG4185 Predicted E3 ubiquitin 95.0 0.016 3.6E-07 55.3 2.8 55 200-268 1-55 (296)
63 KOG0827 Predicted E3 ubiquitin 95.0 0.0016 3.4E-08 67.0 -4.4 59 201-276 195-253 (465)
64 PHA02862 5L protein; Provision 95.0 0.017 3.7E-07 52.8 2.6 47 202-268 2-53 (156)
65 PF14835 zf-RING_6: zf-RING of 94.5 0.013 2.8E-07 46.9 0.6 46 202-269 7-52 (65)
66 KOG4172 Predicted E3 ubiquitin 94.2 0.017 3.6E-07 45.5 0.6 46 203-269 8-55 (62)
67 COG5152 Uncharacterized conser 94.1 0.023 5E-07 54.6 1.5 45 203-268 197-241 (259)
68 PHA02825 LAP/PHD finger-like p 93.9 0.055 1.2E-06 49.9 3.5 52 200-269 6-60 (162)
69 KOG2879 Predicted E3 ubiquitin 93.8 0.036 7.8E-07 55.1 2.2 51 200-268 237-287 (298)
70 PF12906 RINGv: RING-variant d 93.8 0.014 3E-07 43.0 -0.6 42 205-263 1-47 (47)
71 KOG4739 Uncharacterized protei 93.1 0.05 1.1E-06 52.7 1.8 33 230-268 16-48 (233)
72 KOG0297 TNF receptor-associate 92.9 0.064 1.4E-06 54.6 2.4 49 200-268 19-67 (391)
73 PF07800 DUF1644: Protein of u 92.4 0.12 2.5E-06 47.8 3.1 13 257-269 80-92 (162)
74 PHA03096 p28-like protein; Pro 92.3 0.069 1.5E-06 52.8 1.7 55 203-268 179-234 (284)
75 KOG1813 Predicted E3 ubiquitin 91.2 0.079 1.7E-06 53.1 0.8 45 203-268 242-286 (313)
76 KOG2660 Locus-specific chromos 91.2 0.069 1.5E-06 54.0 0.3 52 200-271 13-64 (331)
77 COG5236 Uncharacterized conser 91.0 0.16 3.5E-06 52.3 2.8 48 200-269 59-109 (493)
78 PF14570 zf-RING_4: RING/Ubox 90.9 0.2 4.3E-06 37.9 2.5 47 205-267 1-47 (48)
79 KOG3800 Predicted E3 ubiquitin 90.8 0.2 4.4E-06 50.1 3.2 52 204-270 2-53 (300)
80 COG5222 Uncharacterized conser 90.6 0.17 3.6E-06 51.4 2.4 44 203-265 275-318 (427)
81 KOG1002 Nucleotide excision re 89.4 0.23 4.9E-06 53.6 2.4 69 183-268 513-586 (791)
82 KOG1571 Predicted E3 ubiquitin 89.0 0.14 3.1E-06 52.3 0.5 25 5-29 100-127 (355)
83 KOG0309 Conserved WD40 repeat- 88.8 0.19 4E-06 56.0 1.3 53 200-261 1016-1068(1081)
84 KOG1952 Transcription factor N 87.4 0.31 6.7E-06 54.6 1.9 56 200-268 189-247 (950)
85 KOG0801 Predicted E3 ubiquitin 85.1 0.23 4.9E-06 46.7 -0.5 30 200-243 175-204 (205)
86 smart00249 PHD PHD zinc finger 84.9 0.58 1.2E-05 31.7 1.6 28 236-263 19-47 (47)
87 PF14447 Prok-RING_4: Prokaryo 84.7 0.41 8.9E-06 37.4 0.8 32 232-269 20-51 (55)
88 KOG3053 Uncharacterized conser 84.2 0.52 1.1E-05 46.9 1.5 58 198-269 16-83 (293)
89 KOG3268 Predicted E3 ubiquitin 84.1 0.77 1.7E-05 43.8 2.5 37 234-270 187-230 (234)
90 KOG2066 Vacuolar assembly/sort 83.9 0.42 9E-06 53.3 0.8 43 201-253 783-825 (846)
91 KOG1001 Helicase-like transcri 83.8 0.55 1.2E-05 51.4 1.7 47 203-269 455-501 (674)
92 PF08746 zf-RING-like: RING-li 83.8 0.71 1.5E-05 33.6 1.7 26 236-263 18-43 (43)
93 KOG1814 Predicted E3 ubiquitin 82.5 0.86 1.9E-05 47.7 2.4 55 200-268 182-240 (445)
94 KOG1609 Protein involved in mR 81.9 1 2.3E-05 42.5 2.5 54 200-268 76-134 (323)
95 KOG3161 Predicted E3 ubiquitin 81.5 0.69 1.5E-05 50.9 1.3 87 200-306 9-104 (861)
96 KOG1829 Uncharacterized conser 80.1 0.81 1.8E-05 49.5 1.2 53 200-268 509-561 (580)
97 KOG3113 Uncharacterized conser 78.8 1.9 4.2E-05 42.9 3.2 70 200-288 109-185 (293)
98 COG5220 TFB3 Cdk activating ki 77.9 1 2.2E-05 44.8 1.0 52 200-268 8-64 (314)
99 PF14446 Prok-RING_1: Prokaryo 77.3 2 4.3E-05 33.4 2.3 34 201-248 4-38 (54)
100 PF13901 DUF4206: Domain of un 75.0 1.7 3.8E-05 40.5 1.8 49 200-266 150-198 (202)
101 KOG4275 Predicted E3 ubiquitin 74.1 0.73 1.6E-05 46.6 -1.0 42 202-268 300-342 (350)
102 KOG2817 Predicted E3 ubiquitin 73.8 2.2 4.8E-05 44.4 2.3 54 200-268 332-385 (394)
103 KOG2932 E3 ubiquitin ligase in 73.3 1.7 3.8E-05 44.4 1.4 45 201-267 89-133 (389)
104 KOG3002 Zn finger protein [Gen 72.2 2 4.3E-05 43.0 1.5 44 200-268 46-91 (299)
105 KOG0782 Predicted diacylglycer 69.8 3.9 8.5E-05 45.0 3.1 162 90-278 65-242 (1004)
106 COG5183 SSM4 Protein involved 66.8 4.3 9.3E-05 46.1 2.7 54 200-268 10-66 (1175)
107 KOG4692 Predicted E3 ubiquitin 65.5 3.8 8.2E-05 42.8 1.9 47 200-268 420-467 (489)
108 KOG1100 Predicted E3 ubiquitin 64.7 2.3 5E-05 40.3 0.2 29 232-268 171-200 (207)
109 PF10272 Tmpp129: Putative tra 64.6 4.9 0.00011 41.3 2.5 33 236-268 310-351 (358)
110 KOG0269 WD40 repeat-containing 63.2 4.4 9.6E-05 45.4 2.0 30 236-269 798-829 (839)
111 PF04710 Pellino: Pellino; In 62.9 2.4 5.3E-05 44.3 0.0 62 201-268 276-339 (416)
112 PF00628 PHD: PHD-finger; Int 60.9 0.76 1.6E-05 33.1 -3.0 30 236-265 19-50 (51)
113 COG5175 MOT2 Transcriptional r 59.9 6.7 0.00014 40.8 2.5 52 201-268 13-64 (480)
114 KOG0298 DEAD box-containing he 58.5 3.4 7.3E-05 48.6 0.2 48 201-268 1152-1199(1394)
115 KOG3842 Adaptor protein Pellin 54.9 9.5 0.00021 39.4 2.6 59 201-267 289-351 (429)
116 KOG3899 Uncharacterized conser 53.3 8.7 0.00019 39.3 2.0 33 236-268 324-365 (381)
117 PF04710 Pellino: Pellino; In 53.1 4.5 9.7E-05 42.4 0.0 68 202-269 328-402 (416)
118 PF02891 zf-MIZ: MIZ/SP-RING z 50.6 9 0.0002 28.6 1.3 32 231-265 15-49 (50)
119 COG5109 Uncharacterized conser 50.2 9.4 0.0002 39.4 1.7 53 200-267 334-386 (396)
120 KOG0826 Predicted E3 ubiquitin 48.8 10 0.00022 39.1 1.7 49 200-268 298-346 (357)
121 KOG0825 PHD Zn-finger protein 47.4 14 0.00029 42.2 2.5 56 200-268 94-154 (1134)
122 PF03854 zf-P11: P-11 zinc fin 46.8 7.6 0.00016 30.0 0.4 31 234-268 15-46 (50)
123 PF05290 Baculo_IE-1: Baculovi 46.4 19 0.00041 33.0 2.8 54 201-269 79-133 (140)
124 KOG3842 Adaptor protein Pellin 45.7 19 0.0004 37.4 3.0 68 201-268 340-414 (429)
125 KOG1812 Predicted E3 ubiquitin 44.9 11 0.00024 38.7 1.3 55 200-267 144-202 (384)
126 KOG4367 Predicted Zn-finger pr 44.0 16 0.00034 39.3 2.3 36 201-253 3-38 (699)
127 KOG2068 MOT2 transcription fac 43.1 19 0.0004 37.0 2.6 50 203-269 250-299 (327)
128 KOG4362 Transcriptional regula 41.4 11 0.00024 41.9 0.8 50 201-268 20-69 (684)
129 cd00350 rubredoxin_like Rubred 41.2 8.2 0.00018 26.5 -0.2 11 258-268 18-28 (33)
130 cd04718 BAH_plant_2 BAH, or Br 37.9 13 0.00029 34.1 0.6 29 241-269 2-30 (148)
131 KOG0802 E3 ubiquitin ligase [P 37.7 16 0.00034 38.9 1.2 45 200-269 477-521 (543)
132 PF05605 zf-Di19: Drought indu 35.8 31 0.00066 25.6 2.1 12 202-213 2-13 (54)
133 PF10571 UPF0547: Uncharacteri 34.7 16 0.00034 24.4 0.4 10 204-213 2-11 (26)
134 KOG4185 Predicted E3 ubiquitin 34.4 8.3 0.00018 37.0 -1.4 53 201-267 206-266 (296)
135 PF04423 Rad50_zn_hook: Rad50 33.7 5.8 0.00013 29.5 -2.0 34 246-280 9-42 (54)
136 PF14569 zf-UDP: Zinc-binding 31.8 49 0.0011 27.8 2.9 57 200-269 7-63 (80)
137 KOG4577 Transcription factor L 30.3 9.9 0.00022 38.8 -1.6 15 236-250 111-125 (383)
138 PF06676 DUF1178: Protein of u 28.5 17 0.00037 33.2 -0.3 38 236-278 9-53 (148)
139 KOG1701 Focal adhesion adaptor 28.0 8.9 0.00019 40.7 -2.5 16 200-215 300-315 (468)
140 PF07191 zinc-ribbons_6: zinc- 26.2 8.5 0.00018 31.4 -2.4 41 203-269 2-42 (70)
141 KOG4718 Non-SMC (structural ma 25.4 37 0.00081 33.3 1.3 50 200-269 179-228 (235)
142 PF12088 DUF3565: Protein of u 25.4 36 0.00078 27.3 1.0 24 228-251 8-31 (61)
143 PF01492 Gemini_C4: Geminiviru 24.5 71 0.0015 27.1 2.7 53 45-101 8-67 (85)
144 PLN03166 60S ribosomal protein 24.3 60 0.0013 27.9 2.2 48 256-308 40-87 (96)
145 KOG1815 Predicted E3 ubiquitin 24.3 45 0.00099 34.6 1.8 53 200-268 68-126 (444)
146 KOG3005 GIY-YIG type nuclease 24.1 53 0.0012 33.1 2.2 56 203-268 183-243 (276)
147 KOG2979 Protein involved in DN 24.0 39 0.00085 33.8 1.2 50 207-263 170-219 (262)
148 PLN02189 cellulose synthase 22.9 59 0.0013 38.0 2.5 56 200-268 32-87 (1040)
149 PLN02915 cellulose synthase A 22.4 83 0.0018 36.9 3.5 56 200-268 13-68 (1044)
150 PF15616 TerY-C: TerY-C metal 22.3 31 0.00067 31.1 0.1 41 201-268 76-116 (131)
151 KOG2169 Zn-finger transcriptio 22.3 32 0.00069 37.7 0.3 34 235-268 318-356 (636)
152 PF01199 Ribosomal_L34e: Ribos 22.2 24 0.00052 30.1 -0.5 46 256-308 40-85 (94)
153 PF14169 YdjO: Cold-inducible 21.7 43 0.00092 26.6 0.8 13 257-269 39-51 (59)
154 KOG1074 Transcriptional repres 21.0 1.1E+02 0.0025 35.3 4.1 16 20-35 421-436 (958)
155 KOG2231 Predicted E3 ubiquitin 20.8 59 0.0013 36.3 1.9 50 204-270 2-54 (669)
156 smart00132 LIM Zinc-binding do 20.3 44 0.00095 21.7 0.5 37 204-267 1-37 (39)
No 1
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.36 E-value=1.7e-13 Score=97.19 Aligned_cols=44 Identities=34% Similarity=0.749 Sum_probs=36.3
Q ss_pred ccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccc
Q 016977 203 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICL 264 (379)
Q Consensus 203 ~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCR 264 (379)
..|+||++.|. +...+.+|+|||+||.+||.+|+..+ .+||+||
T Consensus 1 d~C~IC~~~~~--------------~~~~~~~l~C~H~fh~~Ci~~~~~~~----~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFE--------------DGEKVVKLPCGHVFHRSCIKEWLKRN----NSCPVCR 44 (44)
T ss_dssp -CETTTTCBHH--------------TTSCEEEETTSEEEEHHHHHHHHHHS----SB-TTTH
T ss_pred CCCcCCChhhc--------------CCCeEEEccCCCeeCHHHHHHHHHhC----CcCCccC
Confidence 36999999998 23446789999999999999999875 4999997
No 2
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.32 E-value=7.5e-13 Score=104.40 Aligned_cols=56 Identities=25% Similarity=0.556 Sum_probs=40.9
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccc
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICL 264 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCR 264 (379)
....|+||++.|.+.++.... +++.-.+.+++|||+||.+||.+||... .+||+||
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~----~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~----~~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQA----PQDECPIVWGPCGHIFHFHCISQWLKQN----NTCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHH----CTTTS-EEEETTSEEEEHHHHHHHHTTS----SB-TTSS
T ss_pred cCCcccccChhhhChhhhhcC----CccccceEecccCCCEEHHHHHHHHhcC----CcCCCCC
Confidence 345699999999766554322 1233456678999999999999999876 4999997
No 3
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=3.5e-12 Score=126.87 Aligned_cols=51 Identities=25% Similarity=0.625 Sum_probs=43.9
Q ss_pred ccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccccC
Q 016977 203 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 270 (379)
Q Consensus 203 ~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~~ 270 (379)
..|+||+|+|. +.+.+++|||+|.||..||+.||.... ..||+|+.++...
T Consensus 230 ~~CaIClEdY~--------------~GdklRiLPC~H~FH~~CIDpWL~~~r---~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYE--------------KGDKLRILPCSHKFHVNCIDPWLTQTR---TFCPVCKRDIRTD 280 (348)
T ss_pred ceEEEeecccc--------------cCCeeeEecCCCchhhccchhhHhhcC---ccCCCCCCcCCCC
Confidence 48999999998 455689999999999999999998763 4799999988743
No 4
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=99.16 E-value=3.3e-11 Score=99.32 Aligned_cols=64 Identities=22% Similarity=0.395 Sum_probs=49.9
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
.++.|+||...|...+|- ..++ +|.-.+....|+|.||.+||.+||..... ...||+||..+.-
T Consensus 20 ~dd~CgICr~~fdg~Cp~---Ck~P-gd~Cplv~g~C~H~FH~hCI~kWl~~~~~-~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPD---CKFP-GDDCPLVWGKCSHNFHMHCILKWLSTQSS-KGQCPMCRQPWKF 83 (85)
T ss_pred CCCceeeEecccccCCCC---ccCC-CCCCceeeccCccHHHHHHHHHHHccccC-CCCCCCcCCeeee
Confidence 478899999999987763 3444 34434557799999999999999987532 3699999998864
No 5
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=7.1e-11 Score=118.89 Aligned_cols=76 Identities=25% Similarity=0.486 Sum_probs=52.7
Q ss_pred hhcccCCCCCcccccCCCCCCCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCC
Q 016977 180 DFADVSEPFESESFGQSYVPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPS 259 (379)
Q Consensus 180 d~~di~e~~~~es~~~~~~p~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~t 259 (379)
|+-+..+....|.++ .++..|.||++++-.... +..-++-|+ ....|||||+||.+||..|+++++ +
T Consensus 270 dl~~~~~t~t~eql~-----n~D~~C~ICmde~~h~~~---~~~~~~~~~-~pKrLpCGHilHl~CLknW~ERqQ----T 336 (491)
T COG5243 270 DLNAMYPTATEEQLT-----NSDRTCTICMDEMFHPDH---EPLPRGLDM-TPKRLPCGHILHLHCLKNWLERQQ----T 336 (491)
T ss_pred HHHhhcchhhhhhhc-----CCCCeEEEecccccCCCC---ccCcccccC-CcccccccceeeHHHHHHHHHhcc----C
Confidence 555555555555553 577889999999653221 111122233 356899999999999999999885 9
Q ss_pred Ccccccccc
Q 016977 260 CPICLRLQE 268 (379)
Q Consensus 260 CPLCRs~~~ 268 (379)
||+||.++.
T Consensus 337 CPICr~p~i 345 (491)
T COG5243 337 CPICRRPVI 345 (491)
T ss_pred CCcccCccc
Confidence 999999953
No 6
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.92 E-value=8.2e-10 Score=90.93 Aligned_cols=63 Identities=21% Similarity=0.337 Sum_probs=53.6
Q ss_pred CccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 202 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 202 ~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
.+.|+||...+.+.+|++...... ++.-+++...|.|.||.+||..||..+ ..||+|++.+.-
T Consensus 20 id~CaICRnhim~~C~eCq~~~~~-~~eC~v~wG~CnHaFH~HCI~rWL~Tk----~~CPld~q~w~~ 82 (88)
T COG5194 20 IDVCAICRNHIMGTCPECQFGMTP-GDECPVVWGVCNHAFHDHCIYRWLDTK----GVCPLDRQTWVL 82 (88)
T ss_pred cchhhhhhccccCcCcccccCCCC-CCcceEEEEecchHHHHHHHHHHHhhC----CCCCCCCceeEE
Confidence 477999999999999998776644 455567788999999999999999885 489999999874
No 7
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.92 E-value=5.5e-10 Score=106.42 Aligned_cols=56 Identities=21% Similarity=0.549 Sum_probs=40.7
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
....|+||++.+.+.. +. ......+++|+|+||.+||.+|+... .+||+||..+..
T Consensus 173 ~~~eC~ICle~~~~~~-------~~--~~~~~vl~~C~H~FC~~CI~~Wl~~~----~tCPlCR~~~~~ 228 (238)
T PHA02929 173 KDKECAICMEKVYDKE-------IK--NMYFGILSNCNHVFCIECIDIWKKEK----NTCPVCRTPFIS 228 (238)
T ss_pred CCCCCccCCcccccCc-------cc--cccceecCCCCCcccHHHHHHHHhcC----CCCCCCCCEeeE
Confidence 5678999999986210 00 11123345799999999999999764 599999998763
No 8
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.86 E-value=1.8e-09 Score=72.92 Aligned_cols=45 Identities=27% Similarity=0.699 Sum_probs=35.6
Q ss_pred cccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccc
Q 016977 204 KCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQ 267 (379)
Q Consensus 204 ~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~ 267 (379)
.|+||++.+. + .+.+++|||.||..||+.|+.... ..||+|+..+
T Consensus 1 ~C~iC~~~~~--------------~--~~~~~~C~H~~c~~C~~~~~~~~~---~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFR--------------E--PVVLLPCGHVFCRSCIDKWLKSGK---NTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhh--------------C--ceEecCCCChhcHHHHHHHHHhCc---CCCCCCCCcC
Confidence 4999998874 1 244567999999999999998632 6899999753
No 9
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=1.1e-09 Score=108.06 Aligned_cols=51 Identities=24% Similarity=0.576 Sum_probs=42.4
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
.+.+|+||++.|. ..+.+.+|||-|+||..||++|+..-. ..||+||.++-
T Consensus 322 ~GveCaICms~fi--------------K~d~~~vlPC~H~FH~~Cv~kW~~~y~---~~CPvCrt~iP 372 (374)
T COG5540 322 KGVECAICMSNFI--------------KNDRLRVLPCDHRFHVGCVDKWLLGYS---NKCPVCRTAIP 372 (374)
T ss_pred CCceEEEEhhhhc--------------ccceEEEeccCceechhHHHHHHhhhc---ccCCccCCCCC
Confidence 5678999999997 234488999999999999999998432 58999998764
No 10
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=3.5e-09 Score=86.66 Aligned_cols=62 Identities=24% Similarity=0.494 Sum_probs=48.8
Q ss_pred CccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 202 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 202 ~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
.++|+||..+|...+|- ..++.+|.+. .+--|.|.||++||.+|+..... ...||+||..+.
T Consensus 20 ~e~CGiCRm~Fdg~Cp~---Ck~PgDdCPL-v~G~C~h~fh~hCI~~wl~~~ts-q~~CPmcRq~~~ 81 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPD---CKLPGDDCPL-VWGYCLHAFHAHCILKWLNTPTS-QGQCPMCRQTWQ 81 (84)
T ss_pred CCccceEecccCCcCCC---CcCCCCCCcc-HHHHHHHHHHHHHHHHHhcCccc-cccCCcchheeE
Confidence 34899999999987764 4566555554 35589999999999999986543 378999999875
No 11
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=4.6e-09 Score=108.82 Aligned_cols=53 Identities=26% Similarity=0.533 Sum_probs=43.2
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
.....|.||.+.|.. ++...+.+|+|||+||..||.+|++.. .+||+||..+.
T Consensus 289 ~~~~~C~IC~e~l~~------------~~~~~~~rL~C~Hifh~~CL~~W~er~----qtCP~CR~~~~ 341 (543)
T KOG0802|consen 289 LSDELCIICLEELHS------------GHNITPKRLPCGHIFHDSCLRSWFERQ----QTCPTCRTVLY 341 (543)
T ss_pred hcCCeeeeechhhcc------------ccccccceeecccchHHHHHHHHHHHh----CcCCcchhhhh
Confidence 357889999999982 122346789999999999999999986 49999999543
No 12
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.66 E-value=1.9e-08 Score=65.65 Aligned_cols=39 Identities=33% Similarity=0.763 Sum_probs=31.0
Q ss_pred ccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccc
Q 016977 205 CGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPIC 263 (379)
Q Consensus 205 CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLC 263 (379)
|+||++... ...+++|||+||.+||+.|+...+ ..||+|
T Consensus 1 C~iC~~~~~-----------------~~~~~~C~H~~c~~C~~~~~~~~~---~~CP~C 39 (39)
T smart00184 1 CPICLEELK-----------------DPVVLPCGHTFCRSCIRKWLKSGN---NTCPIC 39 (39)
T ss_pred CCcCccCCC-----------------CcEEecCCChHHHHHHHHHHHhCc---CCCCCC
Confidence 788987733 255789999999999999998332 579998
No 13
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.65 E-value=8.5e-09 Score=71.83 Aligned_cols=39 Identities=44% Similarity=0.954 Sum_probs=31.9
Q ss_pred ccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccc
Q 016977 205 CGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPIC 263 (379)
Q Consensus 205 CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLC 263 (379)
|+||++.+. + .+.+++|||+|+.+||++|+..+ ..||+|
T Consensus 1 C~iC~~~~~--------------~--~~~~~~CGH~fC~~C~~~~~~~~----~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELR--------------D--PVVVTPCGHSFCKECIEKYLEKN----PKCPVC 39 (39)
T ss_dssp ETTTTSB-S--------------S--EEEECTTSEEEEHHHHHHHHHCT----SB-TTT
T ss_pred CCCCCCccc--------------C--cCEECCCCCchhHHHHHHHHHCc----CCCcCC
Confidence 899999887 2 35688999999999999999883 699998
No 14
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=1.2e-08 Score=87.54 Aligned_cols=65 Identities=15% Similarity=0.278 Sum_probs=52.9
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
+..+.|+||...+-+.+.++........+.-.|+...|.|.||.+||.+||..++ .||||.+++.
T Consensus 44 i~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~----vCPLdn~eW~ 108 (114)
T KOG2930|consen 44 IVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRN----VCPLDNKEWV 108 (114)
T ss_pred eeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcC----cCCCcCccee
Confidence 4667899999998888877766543334445688889999999999999998874 8999999987
No 15
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.60 E-value=4.2e-08 Score=91.37 Aligned_cols=52 Identities=29% Similarity=0.664 Sum_probs=40.2
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCC------------CCCCCCCcccccccc
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKT------------QKSDPSCPICLRLQE 268 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~------------~~~d~tCPLCRs~~~ 268 (379)
....|+||++.+. + ..+++|||+|+..||.+|+... ......||+||..+.
T Consensus 17 ~~~~CpICld~~~--------------d---PVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 17 GDFDCNICLDQVR--------------D---PVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred CccCCccCCCcCC--------------C---cEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 5678999999876 2 2357999999999999998531 112468999999986
Q ss_pred c
Q 016977 269 E 269 (379)
Q Consensus 269 ~ 269 (379)
.
T Consensus 80 ~ 80 (193)
T PLN03208 80 E 80 (193)
T ss_pred h
Confidence 3
No 16
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.47 E-value=6.5e-08 Score=70.45 Aligned_cols=46 Identities=33% Similarity=0.661 Sum_probs=37.0
Q ss_pred CccccccccchhccCCCcccccccCCCCCCceeecCCCH-hhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 202 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHV-FHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 202 ~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHV-FHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
...|.||++... .+.++||||. |...|+++|+... ..||+||+.+.
T Consensus 2 ~~~C~iC~~~~~-----------------~~~~~pCgH~~~C~~C~~~~~~~~----~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPR-----------------DVVLLPCGHLCFCEECAERLLKRK----KKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBS-----------------SEEEETTCEEEEEHHHHHHHHHTT----SBBTTTTBB-S
T ss_pred cCCCccCCccCC-----------------ceEEeCCCChHHHHHHhHHhcccC----CCCCcCChhhc
Confidence 357999998755 2668899999 9999999999854 58999999875
No 17
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.46 E-value=9.7e-08 Score=68.58 Aligned_cols=42 Identities=33% Similarity=0.710 Sum_probs=31.0
Q ss_pred ccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccc
Q 016977 205 CGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPIC 263 (379)
Q Consensus 205 CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLC 263 (379)
|+||++.|.+ -..|+|||+|-..||++|..+.......||+|
T Consensus 1 CpiC~~~~~~-----------------Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD-----------------PVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS-----------------EEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCC-----------------ccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999982 33689999999999999998765444789998
No 18
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.46 E-value=5.9e-08 Score=67.31 Aligned_cols=41 Identities=29% Similarity=0.758 Sum_probs=33.3
Q ss_pred ccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccc
Q 016977 205 CGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPIC 263 (379)
Q Consensus 205 CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLC 263 (379)
|+||++.+.+ .+.+++|||.|+..||.+|+.... ...||+|
T Consensus 1 C~iC~~~~~~----------------~~~~~~C~H~fC~~C~~~~~~~~~--~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFED----------------PVILLPCGHSFCRDCLRKWLENSG--SVKCPLC 41 (41)
T ss_dssp ETTTSSBCSS----------------EEEETTTSEEEEHHHHHHHHHHTS--SSBTTTT
T ss_pred CCcCCccccC----------------CCEEecCCCcchHHHHHHHHHhcC--CccCCcC
Confidence 8999999872 135789999999999999998422 3689998
No 19
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.45 E-value=1.9e-07 Score=66.82 Aligned_cols=44 Identities=32% Similarity=0.749 Sum_probs=35.4
Q ss_pred cccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccc
Q 016977 204 KCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLR 265 (379)
Q Consensus 204 ~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs 265 (379)
.|.||.+.|. +.....+++|||+|...||+++... ...||+|++
T Consensus 1 ~C~~C~~~~~--------------~~~~~~l~~CgH~~C~~C~~~~~~~----~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYS--------------EERRPRLTSCGHIFCEKCLKKLKGK----SVKCPICRK 44 (44)
T ss_pred CCcCcCcccc--------------CCCCeEEcccCCHHHHHHHHhhcCC----CCCCcCCCC
Confidence 4999999984 2334678999999999999999822 268999985
No 20
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.40 E-value=1.9e-07 Score=94.90 Aligned_cols=49 Identities=31% Similarity=0.920 Sum_probs=40.8
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
.....|+||++.|. .++ +++|||.|+..||..|+... ..||+|+..+..
T Consensus 24 e~~l~C~IC~d~~~---------------~Pv--itpCgH~FCs~CI~~~l~~~----~~CP~Cr~~~~~ 72 (397)
T TIGR00599 24 DTSLRCHICKDFFD---------------VPV--LTSCSHTFCSLCIRRCLSNQ----PKCPLCRAEDQE 72 (397)
T ss_pred ccccCCCcCchhhh---------------Ccc--CCCCCCchhHHHHHHHHhCC----CCCCCCCCcccc
Confidence 46678999999987 222 67999999999999999764 479999998864
No 21
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=3.4e-07 Score=84.79 Aligned_cols=51 Identities=29% Similarity=0.741 Sum_probs=41.6
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
.....|+||++.+.++.| ....|||||..+||+.-+...+ +||+|++-+.+
T Consensus 129 ~~~~~CPiCl~~~sek~~---------------vsTkCGHvFC~~Cik~alk~~~----~CP~C~kkIt~ 179 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVP---------------VSTKCGHVFCSQCIKDALKNTN----KCPTCRKKITH 179 (187)
T ss_pred ccccCCCceecchhhccc---------------cccccchhHHHHHHHHHHHhCC----CCCCcccccch
Confidence 466899999999985322 2358999999999999998874 89999986654
No 22
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.30 E-value=4.1e-07 Score=67.57 Aligned_cols=45 Identities=16% Similarity=0.309 Sum_probs=37.9
Q ss_pred ccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 203 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 203 ~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
..|+||++.+. + + .+++|||+|..+||++|+.+. .+||+|+..+.
T Consensus 2 ~~Cpi~~~~~~--------------~-P--v~~~~G~v~~~~~i~~~~~~~----~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMK--------------D-P--VILPSGQTYERRAIEKWLLSH----GTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCC--------------C-C--EECCCCCEEeHHHHHHHHHHC----CCCCCCcCCCC
Confidence 46999999987 2 2 367999999999999999763 68999998875
No 23
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=3.7e-07 Score=89.36 Aligned_cols=67 Identities=24% Similarity=0.435 Sum_probs=47.9
Q ss_pred cCCCCCCCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 194 GQSYVPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 194 ~~~~~p~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
|.|....++..|+||...+... ..++ +-.+.+-.|.|+|+||+.||.-|---.++ ++||-|+..++-
T Consensus 216 glPtkhl~d~vCaVCg~~~~~s--~~ee-----gvienty~LsCnHvFHEfCIrGWcivGKk--qtCPYCKekVdl 282 (328)
T KOG1734|consen 216 GLPTKHLSDSVCAVCGQQIDVS--VDEE-----GVIENTYKLSCNHVFHEFCIRGWCIVGKK--QTCPYCKEKVDL 282 (328)
T ss_pred CCCCCCCCcchhHhhcchheee--cchh-----hhhhhheeeecccchHHHhhhhheeecCC--CCCchHHHHhhH
Confidence 4455667888999999887621 0011 11124667999999999999999765543 699999988873
No 24
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=4.6e-07 Score=92.08 Aligned_cols=53 Identities=28% Similarity=0.560 Sum_probs=37.8
Q ss_pred ccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 203 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 203 ~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
..|.|| .++. ..+.++..+-.|||+||..||.||+.....+ .+||+|+-...+
T Consensus 5 A~C~Ic-~d~~------------p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~-R~cpic~ik~~~ 57 (465)
T KOG0827|consen 5 AECHIC-IDGR------------PNDHELGPIGTCGHIFHTTCLTQWFEGDPSN-RGCPICQIKLQE 57 (465)
T ss_pred ceeeEe-ccCC------------ccccccccccchhhHHHHHHHHHHHccCCcc-CCCCceeecccc
Confidence 469999 4444 1244445555799999999999999875432 589999955443
No 25
>PHA02926 zinc finger-like protein; Provisional
Probab=98.24 E-value=9.6e-07 Score=84.44 Aligned_cols=60 Identities=27% Similarity=0.613 Sum_probs=41.7
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceee-cCCCHhhHHHHHhhccCCCC--CCCCCcccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVL-SCRHVFHAECLEQTTPKTQK--SDPSCPICLRLQE 268 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVL-PCGHVFHaeCLeqWL~k~~~--~d~tCPLCRs~~~ 268 (379)
..+..|+||++...++... ++. .-++| +|+|+|+..||.+|....+. ....||+||....
T Consensus 168 SkE~eCgICmE~I~eK~~~--------~eR-rFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLE--------NDR-YFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred cCCCCCccCcccccccccc--------ccc-cccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 4678899999987633110 111 12344 89999999999999875321 1256999999886
No 26
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=1e-06 Score=86.41 Aligned_cols=51 Identities=27% Similarity=0.593 Sum_probs=41.1
Q ss_pred CCCCCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 197 YVPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 197 ~~p~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
..+.....|.||++.-. . ....||||+|.-.||..|+.++ ..||+||....
T Consensus 234 ~i~~a~~kC~LCLe~~~---------------~--pSaTpCGHiFCWsCI~~w~~ek----~eCPlCR~~~~ 284 (293)
T KOG0317|consen 234 SIPEATRKCSLCLENRS---------------N--PSATPCGHIFCWSCILEWCSEK----AECPLCREKFQ 284 (293)
T ss_pred cCCCCCCceEEEecCCC---------------C--CCcCcCcchHHHHHHHHHHccc----cCCCcccccCC
Confidence 34467789999998864 1 2256999999999999999886 47999998765
No 27
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.15 E-value=7.7e-07 Score=64.86 Aligned_cols=43 Identities=33% Similarity=0.782 Sum_probs=23.3
Q ss_pred ccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCc
Q 016977 205 CGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCP 261 (379)
Q Consensus 205 CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCP 261 (379)
|+||.+ +.. .+. ...+|+|||+|-.+||++++.+.......||
T Consensus 1 CpIc~e-~~~------------~~n-~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FST------------EEN-PPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----T------------TSS--EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccC------------CCC-CCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 762 133 3457999999999999999986533346787
No 28
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=1.4e-06 Score=90.84 Aligned_cols=64 Identities=28% Similarity=0.449 Sum_probs=40.5
Q ss_pred CCCccccccccchhccCCCcccccccCCCCC--CceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMP--VVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~--vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
.+..+|+||+.++.=+.-.+ .+.+. .++. .-.+.||.|+||..||++|...-+ ..||+||..+-
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s-~~~~~-~~~~~~nYm~tPC~HifH~~CL~~WMd~yk---l~CPvCR~pLP 634 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGS-DCMVA-SMMVRRNYMLTPCHHIFHRQCLLQWMDTYK---LICPVCRCPLP 634 (636)
T ss_pred hccccceEeccccceeeccC-cchhh-hhhhhccccccchHHHHHHHHHHHHHhhhc---ccCCccCCCCC
Confidence 35678999998876221100 00000 0110 022459999999999999998543 58999998764
No 29
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.98 E-value=3e-06 Score=87.37 Aligned_cols=50 Identities=26% Similarity=0.587 Sum_probs=40.0
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
....+|+||++.+.+ +..-+....|.|.||..||.+|.. .+||+||....
T Consensus 173 tELPTCpVCLERMD~-------------s~~gi~t~~c~Hsfh~~cl~~w~~------~scpvcR~~q~ 222 (493)
T KOG0804|consen 173 TELPTCPVCLERMDS-------------STTGILTILCNHSFHCSCLMKWWD------SSCPVCRYCQS 222 (493)
T ss_pred ccCCCcchhHhhcCc-------------cccceeeeecccccchHHHhhccc------CcChhhhhhcC
Confidence 577889999999872 232344558999999999999975 48999998765
No 30
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.96 E-value=6.7e-06 Score=61.02 Aligned_cols=44 Identities=30% Similarity=0.561 Sum_probs=32.6
Q ss_pred cccccccchhccCCCcccccccCCCCCCceeecCC-----CHhhHHHHHhhccCCCCCCCCCcccc
Q 016977 204 KCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCR-----HVFHAECLEQTTPKTQKSDPSCPICL 264 (379)
Q Consensus 204 ~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCG-----HVFHaeCLeqWL~k~~~~d~tCPLCR 264 (379)
.|-||++... ....-++||. |.+|..||++|+.+.. ..+||+|.
T Consensus 1 ~CrIC~~~~~---------------~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~--~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGD---------------EGDPLVSPCRCKGSLKYVHQECLERWINESG--NKTCEICK 49 (49)
T ss_pred CccCCCCCCC---------------CCCeeEeccccCCchhHHHHHHHHHHHHHcC--CCcCCCCC
Confidence 3899988322 1223477985 9999999999998764 25899995
No 31
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=9.4e-06 Score=77.64 Aligned_cols=54 Identities=24% Similarity=0.460 Sum_probs=42.5
Q ss_pred CCCCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 198 VPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 198 ~p~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
.+....+|-||++.-. . ..|-.|||.|..-||-|||.... +...||+|+..+..
T Consensus 43 ~~~~~FdCNICLd~ak---------------d--PVvTlCGHLFCWpClyqWl~~~~-~~~~cPVCK~~Vs~ 96 (230)
T KOG0823|consen 43 RDGGFFDCNICLDLAK---------------D--PVVTLCGHLFCWPCLYQWLQTRP-NSKECPVCKAEVSI 96 (230)
T ss_pred CCCCceeeeeeccccC---------------C--CEEeecccceehHHHHHHHhhcC-CCeeCCcccccccc
Confidence 4468899999998744 2 23568999999999999998653 23579999999973
No 32
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=1.1e-05 Score=70.18 Aligned_cols=45 Identities=29% Similarity=0.802 Sum_probs=38.0
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLR 265 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs 265 (379)
.+...|+||++.|.+ + .+|+|||.|-..||..+.. . ...||.||.
T Consensus 11 ~~~~~C~iC~~~~~~---------------p--~~l~C~H~~c~~C~~~~~~-~---~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFRE---------------P--VLLPCGHNFCRACLTRSWE-G---PLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhc---------------C--ccccccchHhHHHHHHhcC-C---CcCCcccCC
Confidence 477789999999982 2 5889999999999999987 2 268999994
No 33
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.76 E-value=2e-05 Score=78.24 Aligned_cols=55 Identities=20% Similarity=0.427 Sum_probs=38.6
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
|++..|+||+....- +.++... +-+|||.|...||+..+.... ..||+|+..+..
T Consensus 1 md~~~CP~Ck~~~y~-----------np~~kl~-i~~CGH~~C~sCv~~l~~~~~---~~CP~C~~~lrk 55 (309)
T TIGR00570 1 MDDQGCPRCKTTKYR-----------NPSLKLM-VNVCGHTLCESCVDLLFVRGS---GSCPECDTPLRK 55 (309)
T ss_pred CCCCCCCcCCCCCcc-----------Ccccccc-cCCCCCcccHHHHHHHhcCCC---CCCCCCCCccch
Confidence 567889999985320 1122111 228999999999999776543 589999988864
No 34
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.74 E-value=1.6e-05 Score=62.50 Aligned_cols=49 Identities=16% Similarity=0.325 Sum_probs=36.3
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
+...|+||.+.+.+ -.+++|||+|-..||++|+.+.. .+||+|+..+..
T Consensus 3 ~~f~CpIt~~lM~d-----------------PVi~~~G~tyer~~I~~~l~~~~---~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELMRD-----------------PVILPSGHTYERSAIERWLEQNG---GTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB-SS-----------------EEEETTSEEEEHHHHHHHHCTTS---SB-TTT-SB-SG
T ss_pred cccCCcCcCcHhhC-----------------ceeCCcCCEEcHHHHHHHHHcCC---CCCCCCCCcCCc
Confidence 45789999999871 33689999999999999999843 699999888764
No 35
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.67 E-value=1.8e-05 Score=79.87 Aligned_cols=50 Identities=26% Similarity=0.755 Sum_probs=41.7
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccccC
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 270 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~~ 270 (379)
.+...|.||.+.|. . ..+.||+|.|..-||...|..+ +.||+|+..+.+.
T Consensus 21 D~lLRC~IC~eyf~---------------i--p~itpCsHtfCSlCIR~~L~~~----p~CP~C~~~~~Es 70 (442)
T KOG0287|consen 21 DDLLRCGICFEYFN---------------I--PMITPCSHTFCSLCIRKFLSYK----PQCPTCCVTVTES 70 (442)
T ss_pred HHHHHHhHHHHHhc---------------C--ceeccccchHHHHHHHHHhccC----CCCCceecccchh
Confidence 35678999999997 2 3355999999999999999875 7999999998753
No 36
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.63 E-value=4.3e-06 Score=65.94 Aligned_cols=57 Identities=28% Similarity=0.547 Sum_probs=25.0
Q ss_pred CccccccccchhccCCCcccccccCCCCCCcee--ecCCCHhhHHHHHhhccCCCC----C---CCCCccccccccc
Q 016977 202 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGV--LSCRHVFHAECLEQTTPKTQK----S---DPSCPICLRLQEE 269 (379)
Q Consensus 202 ~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaV--LPCGHVFHaeCLeqWL~k~~~----~---d~tCPLCRs~~~~ 269 (379)
...|+||...+.+ .++.+.+.= -.|+++||..||-+||..... - ..+||.|+..+..
T Consensus 2 ~~~C~IC~~~~~~-----------~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLD-----------DGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-T-----------T-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecC-----------CCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 4579999987541 112222211 269999999999999974211 1 1369999998763
No 37
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=3.4e-05 Score=75.27 Aligned_cols=53 Identities=30% Similarity=0.570 Sum_probs=41.4
Q ss_pred CCCCCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHh-hccCCCCCCCCCccccccccc
Q 016977 197 YVPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQ-TTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 197 ~~p~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeq-WL~k~~~~d~tCPLCRs~~~~ 269 (379)
-.|.....|.||++.-. +..-++|||+|-..||-. |+.++- .-||+||.-...
T Consensus 210 fip~~d~kC~lC~e~~~-----------------~ps~t~CgHlFC~~Cl~~~~t~~k~---~~CplCRak~~p 263 (271)
T COG5574 210 FIPLADYKCFLCLEEPE-----------------VPSCTPCGHLFCLSCLLISWTKKKY---EFCPLCRAKVYP 263 (271)
T ss_pred cccccccceeeeecccC-----------------CcccccccchhhHHHHHHHHHhhcc---ccCchhhhhccc
Confidence 34467889999998865 233569999999999999 987753 349999987653
No 38
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=4.3e-05 Score=79.92 Aligned_cols=51 Identities=29% Similarity=0.496 Sum_probs=38.7
Q ss_pred CccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCC-CCCCCCCccccccccc
Q 016977 202 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKT-QKSDPSCPICLRLQEE 269 (379)
Q Consensus 202 ~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~-~~~d~tCPLCRs~~~~ 269 (379)
...|+||+++-. +.....|||+|.-.||-+.+... .+.-..||||+..+..
T Consensus 186 ~~~CPICL~~~~-----------------~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPS-----------------VPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCC-----------------cccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 778999998854 12234699999999999977655 2234579999998864
No 39
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.48 E-value=4.3e-05 Score=84.71 Aligned_cols=57 Identities=25% Similarity=0.596 Sum_probs=40.7
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
...+.|+||..-|.- + ....|.-+--.|.|-||+.||-+|+.... ..+||+||.++.
T Consensus 1467 sG~eECaICYsvL~~---------v-dr~lPskrC~TCknKFH~~CLyKWf~Ss~--~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDM---------V-DRSLPSKRCATCKNKFHTRCLYKWFASSA--RSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHH---------H-hccCCccccchhhhhhhHHHHHHHHHhcC--CCCCCccccccc
Confidence 366789999988761 0 00122223347999999999999998765 369999997653
No 40
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.47 E-value=2.7e-05 Score=84.95 Aligned_cols=53 Identities=21% Similarity=0.252 Sum_probs=42.8
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccccC
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 270 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~~ 270 (379)
-....|+||+..+. |..+....+|+|.||++||+.|....+ +||+||..+.+.
T Consensus 121 ~~~~~CP~Ci~s~~--------------DqL~~~~k~c~H~FC~~Ci~sWsR~aq----TCPiDR~EF~~v 173 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCN--------------DQLEESEKHTAHYFCEECVGSWSRCAQ----TCPVDRGEFGEV 173 (1134)
T ss_pred hhhhhhhHHHHHHH--------------HHhhccccccccccHHHHhhhhhhhcc----cCchhhhhhhee
Confidence 45667999998877 333455669999999999999987764 999999999753
No 41
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.44 E-value=4.9e-05 Score=77.92 Aligned_cols=54 Identities=30% Similarity=0.741 Sum_probs=41.5
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
..+..|..|.+.+-.+ .+....|||.|+||+.|+...|.++. +.+||-||+...
T Consensus 363 e~~L~Cg~CGe~~Glk-------------~e~LqALpCsHIfH~rCl~e~L~~n~--~rsCP~CrklrS 416 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLK-------------NERLQALPCSHIFHLRCLQEILENNG--TRSCPNCRKLRS 416 (518)
T ss_pred HHhhhhhhhhhhhcCC-------------cccccccchhHHHHHHHHHHHHHhCC--CCCCccHHHHHh
Confidence 4567899999988632 22355789999999999999997654 468999995443
No 42
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=7.2e-05 Score=76.85 Aligned_cols=53 Identities=23% Similarity=0.528 Sum_probs=41.3
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccc
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQ 267 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~ 267 (379)
...+|+||++.+.- ....-+..|.|||.|-.+||+.||- ++....||+|....
T Consensus 3 ~g~tcpiclds~~~------------~g~hr~vsl~cghlFgs~cie~wl~--k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 3 CGTTCPICLDSYTT------------AGNHRIVSLQCGHLFGSQCIEKWLG--KKTKMQCPLCSGKA 55 (463)
T ss_pred ccccCceeeeeeee------------cCceEEeeecccccccHHHHHHHHh--hhhhhhCcccCChh
Confidence 56789999999872 1233466889999999999999995 33446899998765
No 43
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=97.21 E-value=8.8e-05 Score=59.71 Aligned_cols=33 Identities=33% Similarity=0.789 Sum_probs=27.7
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHH
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLE 247 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLe 247 (379)
.....|+||.+.|. ..+..+.||||+||..|++
T Consensus 76 ~~~~~C~vC~k~l~---------------~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLG---------------NSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCC---------------CceEEEeCCCeEEeccccc
Confidence 35667999999987 2458899999999999986
No 44
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.10 E-value=0.00027 Score=70.49 Aligned_cols=49 Identities=24% Similarity=0.653 Sum_probs=40.1
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
.....|-||.+.|. . ....+|||.|..-||...|..+ +-||+||.+..+
T Consensus 23 Ds~lrC~IC~~~i~---------------i--p~~TtCgHtFCslCIR~hL~~q----p~CP~Cr~~~~e 71 (391)
T COG5432 23 DSMLRCRICDCRIS---------------I--PCETTCGHTFCSLCIRRHLGTQ----PFCPVCREDPCE 71 (391)
T ss_pred hhHHHhhhhhheee---------------c--ceecccccchhHHHHHHHhcCC----CCCccccccHHh
Confidence 35568999999987 1 2245999999999999999875 799999998753
No 45
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.00033 Score=75.90 Aligned_cols=51 Identities=29% Similarity=0.655 Sum_probs=41.9
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccccCC
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEENS 271 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~~~ 271 (379)
....|++|-.... | +++..|||+|..+|++.-+...+ ..||.|...++.++
T Consensus 642 ~~LkCs~Cn~R~K--------------d---~vI~kC~H~FC~~Cvq~r~etRq---RKCP~Cn~aFganD 692 (698)
T KOG0978|consen 642 ELLKCSVCNTRWK--------------D---AVITKCGHVFCEECVQTRYETRQ---RKCPKCNAAFGAND 692 (698)
T ss_pred hceeCCCccCchh--------------h---HHHHhcchHHHHHHHHHHHHHhc---CCCCCCCCCCCccc
Confidence 4568999996655 2 44678999999999999998775 68999999999754
No 46
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.00087 Score=66.82 Aligned_cols=83 Identities=18% Similarity=0.327 Sum_probs=56.7
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccccCCCCchhh-h
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEENSPDQQVF-S 278 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~~~~~q~~~-~ 278 (379)
.....|+||+..-. .+ ..|+|+|.|--.||+--....+ .+|++||.++.+....||.+ .
T Consensus 5 ~~~~eC~IC~nt~n---------------~P--v~l~C~HkFCyiCiKGsy~ndk---~~CavCR~pids~i~~~psl~~ 64 (324)
T KOG0824|consen 5 TKKKECLICYNTGN---------------CP--VNLYCFHKFCYICIKGSYKNDK---KTCAVCRFPIDSTIDFEPSLKY 64 (324)
T ss_pred ccCCcceeeeccCC---------------cC--ccccccchhhhhhhcchhhcCC---CCCceecCCCCcchhcchhhhh
Confidence 45678999997643 22 3789999999999998766544 58999999999887666654 5
Q ss_pred hhhccCCccccccc--CCCCCCCCCC
Q 016977 279 RLKNSFPRLRQSCD--NGQSRPWGCP 302 (379)
Q Consensus 279 ~~r~~~p~l~~~~~--~G~sr~w~~a 302 (379)
+|+..-|.....+. .+.-..|++.
T Consensus 65 ~LK~n~p~~~~~t~~~~~rag~n~nq 90 (324)
T KOG0824|consen 65 RLKPNTPEVKRITRSQAKRAGVNGNQ 90 (324)
T ss_pred hhcCCCCCCCcccccHHhhhhhhccC
Confidence 56555555543333 3333344443
No 47
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.00086 Score=67.74 Aligned_cols=49 Identities=31% Similarity=0.581 Sum_probs=39.2
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCH-hhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHV-FHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHV-FHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
....+|.||+.+-. .+.+|||.|. ....|.+..--.. ..|||||..+.+
T Consensus 288 ~~gkeCVIClse~r-----------------dt~vLPCRHLCLCs~Ca~~Lr~q~----n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESR-----------------DTVVLPCRHLCLCSGCAKSLRYQT----NNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCc-----------------ceEEecchhhehhHhHHHHHHHhh----cCCCccccchHh
Confidence 34778999998755 3679999998 8899988875332 479999999986
No 48
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=96.51 E-value=0.0015 Score=64.17 Aligned_cols=50 Identities=32% Similarity=0.822 Sum_probs=40.6
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
....|+||.+.+.. ..+.+.+|+|||..|..|++...... .+||+|.+ ..
T Consensus 157 ~~~ncPic~e~l~~-------------s~~~~~~~~CgH~~h~~cf~e~~~~~----y~CP~C~~-~~ 206 (276)
T KOG1940|consen 157 SEFNCPICKEYLFL-------------SFEDAGVLKCGHYMHSRCFEEMICEG----YTCPICSK-PG 206 (276)
T ss_pred ccCCCchhHHHhcc-------------ccccCCccCcccchHHHHHHHHhccC----CCCCcccc-hH
Confidence 44559999999872 34567799999999999999998764 79999999 43
No 49
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.49 E-value=0.0012 Score=50.58 Aligned_cols=44 Identities=23% Similarity=0.483 Sum_probs=28.8
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcc
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPI 262 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPL 262 (379)
....|+|.+..|.+ +|.-..|||+|=.+.|.+++... ....||+
T Consensus 10 ~~~~CPiT~~~~~~----------------PV~s~~C~H~fek~aI~~~i~~~--~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFED----------------PVKSKKCGHTFEKEAILQYIQRN--GSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SS----------------EEEESSS--EEEHHHHHHHCTTT--S-EE-SC
T ss_pred eccCCCCcCChhhC----------------CcCcCCCCCeecHHHHHHHHHhc--CCCCCCC
Confidence 45679999999872 35567999999999999999433 2368998
No 50
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.19 E-value=0.0022 Score=70.87 Aligned_cols=50 Identities=38% Similarity=0.743 Sum_probs=38.9
Q ss_pred CCCCCCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 196 SYVPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 196 ~~~p~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
+..++....|..|.-.|. .|.| -..|||.||.+|++ .+ ...||-|+.++.
T Consensus 834 sa~i~q~skCs~C~~~Ld---------------lP~V-hF~CgHsyHqhC~e---~~----~~~CP~C~~e~~ 883 (933)
T KOG2114|consen 834 SAQIFQVSKCSACEGTLD---------------LPFV-HFLCGHSYHQHCLE---DK----EDKCPKCLPELR 883 (933)
T ss_pred ccceeeeeeecccCCccc---------------ccee-eeecccHHHHHhhc---cC----cccCCccchhhh
Confidence 445577889999999886 4444 67999999999999 22 257999999664
No 51
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.0012 Score=67.12 Aligned_cols=51 Identities=20% Similarity=0.496 Sum_probs=41.3
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccccC
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 270 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~~ 270 (379)
....|+|||..|.. . ..+--|+|-|..+||..-+...+ ..||.||+.++.+
T Consensus 42 ~~v~c~icl~llk~-------------t---mttkeClhrfc~~ci~~a~r~gn---~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 42 IQVICPICLSLLKK-------------T---MTTKECLHRFCFDCIWKALRSGN---NECPTCRKKLVSK 92 (381)
T ss_pred hhhccHHHHHHHHh-------------h---cccHHHHHHHHHHHHHHHHHhcC---CCCchHHhhcccc
Confidence 45569999999982 1 22457999999999999998775 6999999998755
No 52
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.0034 Score=63.35 Aligned_cols=74 Identities=24% Similarity=0.560 Sum_probs=48.8
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceee-cCCCHhhHHHHHhhccCCC---CCCCCCcccccccccC-----
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVL-SCRHVFHAECLEQTTPKTQ---KSDPSCPICLRLQEEN----- 270 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVL-PCGHVFHaeCLeqWL~k~~---~~d~tCPLCRs~~~~~----- 270 (379)
..+..|+||++...++. . ....-++| +|-|.|-..||.+|-...+ .....||.||......
T Consensus 159 s~~k~CGICme~i~ek~--~--------~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~pS~~ 228 (344)
T KOG1039|consen 159 SSEKECGICMETINEKA--A--------SERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNPSSF 228 (344)
T ss_pred cccccceehhhhccccc--h--------hhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccccccce
Confidence 56788999999988422 1 11123444 5999999999999974432 1126899999876422
Q ss_pred -----CCCchhhhhhhcc
Q 016977 271 -----SPDQQVFSRLKNS 283 (379)
Q Consensus 271 -----~~~q~~~~~~r~~ 283 (379)
..++.++...++.
T Consensus 229 Wv~t~~~k~~li~e~~~~ 246 (344)
T KOG1039|consen 229 WVETKEEKQKLIEEYEAE 246 (344)
T ss_pred eeeecccccccHHHHHHH
Confidence 3455666555543
No 53
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.0038 Score=64.10 Aligned_cols=51 Identities=33% Similarity=0.704 Sum_probs=41.0
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccccCC
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEENS 271 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~~~ 271 (379)
.....|.||.+.|. . +| ++||||.|-..||++-+... ..||+||..+.+-.
T Consensus 82 ~sef~c~vc~~~l~---------------~-pv-~tpcghs~c~~Cl~r~ld~~----~~cp~Cr~~l~e~~ 132 (398)
T KOG4159|consen 82 RSEFECCVCSRALY---------------P-PV-VTPCGHSFCLECLDRSLDQE----TECPLCRDELVELP 132 (398)
T ss_pred cchhhhhhhHhhcC---------------C-Cc-cccccccccHHHHHHHhccC----CCCcccccccccch
Confidence 47788999988876 1 23 56999999999999977643 68999999998543
No 54
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=95.73 E-value=0.0066 Score=54.38 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=28.0
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCC------CHhhHHHHHhhc
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCR------HVFHAECLEQTT 250 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCG------HVFHaeCLeqWL 250 (379)
....|.||++.+. +..-|..++|| |+||++|+++|-
T Consensus 25 ~~~EC~IC~~~I~--------------~~~GvV~vt~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 25 CTVECQICFDRID--------------NNDGVVYVTDGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred cCeeehhhhhhhh--------------cCCCEEEEecCCeehHHHHHHHHHHHHHH
Confidence 4678999999987 22225566777 899999999994
No 55
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.60 E-value=0.0078 Score=59.14 Aligned_cols=53 Identities=21% Similarity=0.359 Sum_probs=43.7
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
...+.|+||...|+ +..+-+.+-+|||||-.+|.++.+.+. -.||+|-..+.+
T Consensus 219 s~ryiCpvtrd~Lt-------------Nt~~ca~Lr~sg~Vv~~ecvEklir~D----~v~pv~d~plkd 271 (303)
T KOG3039|consen 219 SKRYICPVTRDTLT-------------NTTPCAVLRPSGHVVTKECVEKLIRKD----MVDPVTDKPLKD 271 (303)
T ss_pred ccceecccchhhhc-------------CccceEEeccCCcEeeHHHHHHhcccc----ccccCCCCcCcc
Confidence 46788999999998 244445555999999999999999875 589999998875
No 56
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.011 Score=57.64 Aligned_cols=66 Identities=27% Similarity=0.501 Sum_probs=44.9
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccC---C-CCCCCCCcccccccccCC-CCch
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPK---T-QKSDPSCPICLRLQEENS-PDQQ 275 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k---~-~~~d~tCPLCRs~~~~~~-~~q~ 275 (379)
-...|.+|...|.+ +| ...|.|=|+||-.||++|-.. + ......||-|..++-... -.-|
T Consensus 49 Y~pNC~LC~t~La~------------gd---t~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~NlvsP 113 (299)
T KOG3970|consen 49 YNPNCRLCNTPLAS------------GD---TTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPINLVSP 113 (299)
T ss_pred CCCCCceeCCcccc------------Cc---ceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCccccch
Confidence 34569999999984 12 347899999999999999643 1 112468999999885321 1234
Q ss_pred hhhhhh
Q 016977 276 VFSRLK 281 (379)
Q Consensus 276 ~~~~~r 281 (379)
+..+||
T Consensus 114 va~aLr 119 (299)
T KOG3970|consen 114 VAEALR 119 (299)
T ss_pred hHHHHH
Confidence 444554
No 57
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=95.41 E-value=0.0084 Score=69.73 Aligned_cols=55 Identities=24% Similarity=0.408 Sum_probs=38.1
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCC------CCCCCcccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQK------SDPSCPICLRLQE 268 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~------~d~tCPLCRs~~~ 268 (379)
..++.|.||..+-- ...+.-.|.|+|+||.+|...-|+..-. .-..||+|+..+.
T Consensus 3484 D~DDmCmICFTE~L--------------~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3484 DADDMCMICFTEAL--------------SAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred ccCceEEEEehhhh--------------CCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 45567888864422 1223457899999999999877765422 1257999999886
No 58
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=95.14 E-value=0.0073 Score=60.66 Aligned_cols=55 Identities=22% Similarity=0.542 Sum_probs=41.2
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccC------------------CCC-CCCCC
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPK------------------TQK-SDPSC 260 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k------------------~~~-~d~tC 260 (379)
.....|.|||-.|. +.+...+.+|=|.||..||...|.. -+. ....|
T Consensus 113 ~p~gqCvICLygfa--------------~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavc 178 (368)
T KOG4445|consen 113 HPNGQCVICLYGFA--------------SSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVC 178 (368)
T ss_pred CCCCceEEEEEeec--------------CCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhh
Confidence 46677999999998 4555778899999999999766542 111 12569
Q ss_pred cccccccc
Q 016977 261 PICLRLQE 268 (379)
Q Consensus 261 PLCRs~~~ 268 (379)
|+||..++
T Consensus 179 pVcre~i~ 186 (368)
T KOG4445|consen 179 PVCRERIK 186 (368)
T ss_pred hHhhhhcc
Confidence 99998875
No 59
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.12 E-value=0.014 Score=55.97 Aligned_cols=70 Identities=20% Similarity=0.484 Sum_probs=49.1
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccccC------CCC
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN------SPD 273 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~~------~~~ 273 (379)
.....|||+...|.. ...-|.+.+|||||=..||++.- .. ..||+|-..+... .+.
T Consensus 111 ~~~~~CPvt~~~~~~-------------~~~fv~l~~cG~V~s~~alke~k-~~----~~Cp~c~~~f~~~DiI~Lnp~~ 172 (260)
T PF04641_consen 111 EGRFICPVTGKEFNG-------------KHKFVYLRPCGCVFSEKALKELK-KS----KKCPVCGKPFTEEDIIPLNPPE 172 (260)
T ss_pred CceeECCCCCcccCC-------------ceeEEEEcCCCCEeeHHHHHhhc-cc----ccccccCCccccCCEEEecCCc
Confidence 467789999999872 23446677999999999999993 22 4799999999744 233
Q ss_pred chhhhhhhccCCccc
Q 016977 274 QQVFSRLKNSFPRLR 288 (379)
Q Consensus 274 q~~~~~~r~~~p~l~ 288 (379)
+ -+..++..|-.++
T Consensus 173 e-e~~~l~~~~~~~~ 186 (260)
T PF04641_consen 173 E-ELEKLRERMEERK 186 (260)
T ss_pred c-HHHHHHHHHHHHH
Confidence 3 4555554443333
No 60
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.08 E-value=0.011 Score=65.77 Aligned_cols=37 Identities=30% Similarity=0.534 Sum_probs=29.7
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhcc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTP 251 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~ 251 (379)
.....|.+|...|-. ..--+.+|||.||.+||.+-+.
T Consensus 815 ep~d~C~~C~~~ll~---------------~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLI---------------KPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred cCccchHHhcchhhc---------------CcceeeeccchHHHHHHHHHHH
Confidence 467789999999872 2355889999999999988654
No 61
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=95.08 E-value=0.01 Score=61.68 Aligned_cols=50 Identities=22% Similarity=0.468 Sum_probs=39.6
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
...+.|-||-+.=. .|.+=||||.....||..|-.... ..+||.||.++.
T Consensus 367 sTFeLCKICaendK-----------------dvkIEPCGHLlCt~CLa~WQ~sd~--gq~CPFCRcEIK 416 (563)
T KOG1785|consen 367 STFELCKICAENDK-----------------DVKIEPCGHLLCTSCLAAWQDSDE--GQTCPFCRCEIK 416 (563)
T ss_pred chHHHHHHhhccCC-----------------CcccccccchHHHHHHHhhcccCC--CCCCCceeeEec
Confidence 46678999986522 366779999999999999975542 369999999885
No 62
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=0.016 Score=55.32 Aligned_cols=55 Identities=22% Similarity=0.478 Sum_probs=43.7
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
|....|-||-++|... .+....++|.|||.|-..|+...+.... ..||.||...+
T Consensus 1 m~~~~c~~c~~~~s~~-----------~~~~~p~~l~c~h~~c~~c~~~l~~~~~---i~cpfcR~~~~ 55 (296)
T KOG4185|consen 1 MSFPECEICNEDYSSE-----------DGDHIPRVLKCGHTICQNCASKLLGNSR---ILCPFCRETTE 55 (296)
T ss_pred CCCCceeecCcccccc-----------CcccCCcccccCceehHhHHHHHhcCce---eeccCCCCccc
Confidence 3567899999999831 1344677899999999999999887654 57999999973
No 63
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.00 E-value=0.0016 Score=67.04 Aligned_cols=59 Identities=19% Similarity=0.325 Sum_probs=45.2
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccccCCCCchh
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEENSPDQQV 276 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~~~~~q~~ 276 (379)
-...|+||-+.|.+. .+.+..+-|||++|++||++||.+. ..||.|++.+..+..+..+
T Consensus 195 lv~sl~I~~~slK~~-------------y~k~~~~~~g~~~~~~kL~k~L~~~----~kl~~~~rel~~~~~e~k~ 253 (465)
T KOG0827|consen 195 LVGSLSICFESLKQN-------------YDKISAIVCGHIYHHGKLSKWLATK----RKLPSCRRELPKNGFEEKL 253 (465)
T ss_pred HHhhhHhhHHHHHHH-------------HHHHHHHhhcccchhhHHHHHHHHH----HHhHHHHhhhhhhhHHHHH
Confidence 456799999999852 2335567999999999999999875 4799999999754433333
No 64
>PHA02862 5L protein; Provisional
Probab=94.98 E-value=0.017 Score=52.77 Aligned_cols=47 Identities=17% Similarity=0.430 Sum_probs=35.0
Q ss_pred CccccccccchhccCCCcccccccCCCCCCceeecCC-----CHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 202 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCR-----HVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 202 ~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCG-----HVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
...|=||.+.-. +. +-||. ..-|.+||++|+...+ ...|++|+..+.
T Consensus 2 ~diCWIC~~~~~--------------e~----~~PC~C~GS~K~VHq~CL~~WIn~S~--k~~CeLCkteY~ 53 (156)
T PHA02862 2 SDICWICNDVCD--------------ER----NNFCGCNEEYKVVHIKCMQLWINYSK--KKECNLCKTKYN 53 (156)
T ss_pred CCEEEEecCcCC--------------CC----cccccccCcchhHHHHHHHHHHhcCC--CcCccCCCCeEE
Confidence 357999997733 11 23654 5689999999997654 468999999996
No 65
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=94.51 E-value=0.013 Score=46.87 Aligned_cols=46 Identities=24% Similarity=0.673 Sum_probs=23.8
Q ss_pred CccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 202 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 202 ~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
...|.+|...|.+ +|-+..|.|+|-..||..-+.. .||+|..+.-+
T Consensus 7 lLrCs~C~~~l~~----------------pv~l~~CeH~fCs~Ci~~~~~~------~CPvC~~Paw~ 52 (65)
T PF14835_consen 7 LLRCSICFDILKE----------------PVCLGGCEHIFCSSCIRDCIGS------ECPVCHTPAWI 52 (65)
T ss_dssp TTS-SSS-S--SS-----------------B---SSS--B-TTTGGGGTTT------B-SSS--B-S-
T ss_pred hcCCcHHHHHhcC----------------CceeccCccHHHHHHhHHhcCC------CCCCcCChHHH
Confidence 3579999999872 3556799999999999887653 59999998854
No 66
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.20 E-value=0.017 Score=45.47 Aligned_cols=46 Identities=24% Similarity=0.566 Sum_probs=31.2
Q ss_pred ccccccccchhccCCCcccccccCCCCCCceeecCCCH-hhHHH-HHhhccCCCCCCCCCccccccccc
Q 016977 203 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHV-FHAEC-LEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 203 ~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHV-FHaeC-LeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
.+|.||.+.-- | ..+-.|||. +--+| |++|.... ..||+||..+..
T Consensus 8 dECTICye~pv--------------d---sVlYtCGHMCmCy~Cg~rl~~~~~----g~CPiCRapi~d 55 (62)
T KOG4172|consen 8 DECTICYEHPV--------------D---SVLYTCGHMCMCYACGLRLKKALH----GCCPICRAPIKD 55 (62)
T ss_pred cceeeeccCcc--------------h---HHHHHcchHHhHHHHHHHHHHccC----CcCcchhhHHHH
Confidence 78999986532 1 124489997 55667 45665432 589999998753
No 67
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=94.14 E-value=0.023 Score=54.57 Aligned_cols=45 Identities=31% Similarity=0.722 Sum_probs=36.9
Q ss_pred ccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 203 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 203 ~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
+.|.||.++|.. ++ +..|||.|...|.-.=+.+. +.|-+|-+...
T Consensus 197 F~C~iCKkdy~s---------------pv--vt~CGH~FC~~Cai~~y~kg----~~C~~Cgk~t~ 241 (259)
T COG5152 197 FLCGICKKDYES---------------PV--VTECGHSFCSLCAIRKYQKG----DECGVCGKATY 241 (259)
T ss_pred eeehhchhhccc---------------hh--hhhcchhHHHHHHHHHhccC----Ccceecchhhc
Confidence 479999999982 22 45899999999998888775 69999998764
No 68
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=93.92 E-value=0.055 Score=49.93 Aligned_cols=52 Identities=25% Similarity=0.478 Sum_probs=36.5
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCC---HhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRH---VFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGH---VFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
.....|-||.+.-. + ...--.|.. .-|.+||++|+..++ ...|++|...+.-
T Consensus 6 ~~~~~CRIC~~~~~--------------~--~~~PC~CkGs~k~VH~sCL~rWi~~s~--~~~CeiC~~~Y~i 60 (162)
T PHA02825 6 LMDKCCWICKDEYD--------------V--VTNYCNCKNENKIVHKECLEEWINTSK--NKSCKICNGPYNI 60 (162)
T ss_pred CCCCeeEecCCCCC--------------C--ccCCcccCCCchHHHHHHHHHHHhcCC--CCcccccCCeEEE
Confidence 35667999976632 1 111123545 569999999998764 4689999999973
No 69
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.85 E-value=0.036 Score=55.08 Aligned_cols=51 Identities=20% Similarity=0.508 Sum_probs=39.7
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
....+|++|.++=+ .| -...+|||+|.--||..-+.... ..+||.|.....
T Consensus 237 t~~~~C~~Cg~~Pt---------------iP-~~~~~C~HiyCY~Ci~ts~~~~a--sf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPT---------------IP-HVIGKCGHIYCYYCIATSRLWDA--SFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCC---------------CC-eeeccccceeehhhhhhhhcchh--hcccCccCCCCc
Confidence 57889999998743 33 23568999999999999876532 269999998887
No 70
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=93.76 E-value=0.014 Score=43.05 Aligned_cols=42 Identities=29% Similarity=0.642 Sum_probs=26.4
Q ss_pred ccccccchhccCCCcccccccCCCCCCceeecCC-----CHhhHHHHHhhccCCCCCCCCCccc
Q 016977 205 CGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCR-----HVFHAECLEQTTPKTQKSDPSCPIC 263 (379)
Q Consensus 205 CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCG-----HVFHaeCLeqWL~k~~~~d~tCPLC 263 (379)
|-||++.-.+ +. .-+.||. -..|.+||++|+..+. ..+|++|
T Consensus 1 CrIC~~~~~~-------------~~--~li~pC~C~Gs~~~vH~~CL~~W~~~~~--~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEE-------------DE--PLISPCRCKGSMKYVHRSCLERWIRESG--NRKCEIC 47 (47)
T ss_dssp ETTTTEE-SS-------------SS---EE-SSS-SSCCGSEECCHHHHHHHHHT---SB-TTT
T ss_pred CeEeCCcCCC-------------CC--ceecccccCCCcchhHHHHHHHHHHhcC--CCcCCCC
Confidence 7789888652 11 2245665 3679999999998643 3579998
No 71
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.06 E-value=0.05 Score=52.67 Aligned_cols=33 Identities=33% Similarity=0.826 Sum_probs=27.6
Q ss_pred CCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 230 PVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 230 ~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
..--+..|+|||...|...-... .||+|++.+.
T Consensus 16 ~~f~LTaC~HvfC~~C~k~~~~~------~C~lCkk~ir 48 (233)
T KOG4739|consen 16 DPFFLTACRHVFCEPCLKASSPD------VCPLCKKSIR 48 (233)
T ss_pred CceeeeechhhhhhhhcccCCcc------ccccccceee
Confidence 34668899999999999887653 7999999975
No 72
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=92.91 E-value=0.064 Score=54.60 Aligned_cols=49 Identities=27% Similarity=0.655 Sum_probs=39.4
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
.....|+||...+.+ . +-...|||.|-..|+..|+... ..||.|+....
T Consensus 19 ~~~l~C~~C~~vl~~--------------p--~~~~~cgh~fC~~C~~~~~~~~----~~cp~~~~~~~ 67 (391)
T KOG0297|consen 19 DENLLCPICMSVLRD--------------P--VQTTTCGHRFCAGCLLESLSNH----QKCPVCRQELT 67 (391)
T ss_pred cccccCccccccccC--------------C--CCCCCCCCcccccccchhhccC----cCCcccccccc
Confidence 456789999999872 1 2125899999999999999873 68999988775
No 73
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=92.36 E-value=0.12 Score=47.85 Aligned_cols=13 Identities=23% Similarity=0.713 Sum_probs=10.9
Q ss_pred CCCCccccccccc
Q 016977 257 DPSCPICLRLQEE 269 (379)
Q Consensus 257 d~tCPLCRs~~~~ 269 (379)
...|||||..+..
T Consensus 80 ~L~CPLCRG~V~G 92 (162)
T PF07800_consen 80 ELACPLCRGEVKG 92 (162)
T ss_pred cccCccccCceec
Confidence 4789999999864
No 74
>PHA03096 p28-like protein; Provisional
Probab=92.30 E-value=0.069 Score=52.79 Aligned_cols=55 Identities=20% Similarity=0.333 Sum_probs=36.9
Q ss_pred ccccccccchhccCCCcccccccCCCCCCceee-cCCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 203 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVL-SCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 203 ~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVL-PCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
-.|+||++....+.+ ....-+.| .|-|+|-..|+..|-..... ..+||.|+....
T Consensus 179 k~c~ic~e~~~~k~~----------~~~~fgil~~c~h~fc~~ci~~wr~~~~~-~e~~~~c~~~~~ 234 (284)
T PHA03096 179 KICGICLENIKAKYI----------IKKYYGILSEIKHEFNIFCIKIWMTESLY-KETEPENRRLNT 234 (284)
T ss_pred hhcccchhhhhhhcc----------ccccccccccCCcHHHHHHHHHHHHhhhh-cccCccccchhh
Confidence 679999998774321 11124456 59999999999999876532 245666655544
No 75
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.23 E-value=0.079 Score=53.10 Aligned_cols=45 Identities=31% Similarity=0.738 Sum_probs=37.4
Q ss_pred ccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 203 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 203 ~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
+.|-||.+.|. .++ +..|+|.|-..|.-+=+.+. ..|++|.....
T Consensus 242 f~c~icr~~f~---------------~pV--vt~c~h~fc~~ca~~~~qk~----~~c~vC~~~t~ 286 (313)
T KOG1813|consen 242 FKCFICRKYFY---------------RPV--VTKCGHYFCEVCALKPYQKG----EKCYVCSQQTH 286 (313)
T ss_pred ccccccccccc---------------cch--hhcCCceeehhhhccccccC----Ccceecccccc
Confidence 56999999987 222 45999999999999888875 58999999875
No 76
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=91.19 E-value=0.069 Score=53.99 Aligned_cols=52 Identities=23% Similarity=0.603 Sum_probs=42.5
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccccCC
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEENS 271 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~~~ 271 (379)
.....|.+|...|- |. ..+.-|=|.|...||-..|... ..||+|...+....
T Consensus 13 n~~itC~LC~GYli--------------DA--TTI~eCLHTFCkSCivk~l~~~----~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 13 NPHITCRLCGGYLI--------------DA--TTITECLHTFCKSCIVKYLEES----KYCPTCDIVIHKTH 64 (331)
T ss_pred ccceehhhccceee--------------cc--hhHHHHHHHHHHHHHHHHHHHh----ccCCccceeccCcc
Confidence 46678999999987 43 3355899999999999999885 49999999997543
No 77
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=90.99 E-value=0.16 Score=52.31 Aligned_cols=48 Identities=19% Similarity=0.522 Sum_probs=37.6
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHh---hccCCCCCCCCCccccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQ---TTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeq---WL~k~~~~d~tCPLCRs~~~~ 269 (379)
.+.+.|-||-+.++ -+.++||+|-...-|.-. .+.+ ..||+||.++++
T Consensus 59 Een~~C~ICA~~~T-----------------Ys~~~PC~H~~CH~Ca~RlRALY~~-----K~C~~CrTE~e~ 109 (493)
T COG5236 59 EENMNCQICAGSTT-----------------YSARYPCGHQICHACAVRLRALYMQ-----KGCPLCRTETEA 109 (493)
T ss_pred cccceeEEecCCce-----------------EEEeccCCchHHHHHHHHHHHHHhc-----cCCCccccccce
Confidence 46678999998887 367999999998888643 3333 379999999985
No 78
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=90.89 E-value=0.2 Score=37.95 Aligned_cols=47 Identities=21% Similarity=0.403 Sum_probs=22.3
Q ss_pred ccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccc
Q 016977 205 CGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQ 267 (379)
Q Consensus 205 CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~ 267 (379)
|++|.+++..+ |. ...-=+||+-+-..|....+...+ ..||-||..+
T Consensus 1 cp~C~e~~d~~------------d~-~~~PC~Cgf~IC~~C~~~i~~~~~---g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDET------------DK-DFYPCECGFQICRFCYHDILENEG---GRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CC------------CT-T--SSTTS----HHHHHHHTTSS----SB-TTT--B-
T ss_pred CCCcccccccC------------CC-ccccCcCCCcHHHHHHHHHHhccC---CCCCCCCCCC
Confidence 78999998621 21 122226899999999888886432 6899999886
No 79
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=90.79 E-value=0.2 Score=50.06 Aligned_cols=52 Identities=19% Similarity=0.486 Sum_probs=37.6
Q ss_pred cccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccccC
Q 016977 204 KCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 270 (379)
Q Consensus 204 ~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~~ 270 (379)
.|++|...-- .+-++ ..-+-+|||-....|.+..+..+. ..||-|+..+.-+
T Consensus 2 ~Cp~CKt~~Y-----------~np~l-k~~in~C~H~lCEsCvd~iF~~g~---~~CpeC~~iLRk~ 53 (300)
T KOG3800|consen 2 ACPKCKTDRY-----------LNPDL-KLMINECGHRLCESCVDRIFSLGP---AQCPECMVILRKN 53 (300)
T ss_pred CCccccccee-----------cCccc-eeeeccccchHHHHHHHHHHhcCC---CCCCcccchhhhc
Confidence 5999985532 11122 222339999999999999998875 7899999988633
No 80
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=90.62 E-value=0.17 Score=51.41 Aligned_cols=44 Identities=34% Similarity=0.766 Sum_probs=35.9
Q ss_pred ccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccc
Q 016977 203 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLR 265 (379)
Q Consensus 203 ~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs 265 (379)
..|++|...|.+ .+..--|+|.|..+||+.-|... |..||.|-.
T Consensus 275 LkCplc~~Llrn----------------p~kT~cC~~~fc~eci~~al~ds---Df~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRN----------------PMKTPCCGHTFCDECIGTALLDS---DFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhC----------------cccCccccchHHHHHHhhhhhhc---cccCCCccc
Confidence 789999999883 13334699999999999988765 489999987
No 81
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=89.43 E-value=0.23 Score=53.61 Aligned_cols=69 Identities=20% Similarity=0.485 Sum_probs=45.3
Q ss_pred ccCCCCCcccccCC-CCC---CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccC-CCCCC
Q 016977 183 DVSEPFESESFGQS-YVP---SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPK-TQKSD 257 (379)
Q Consensus 183 di~e~~~~es~~~~-~~p---~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k-~~~~d 257 (379)
.+.+|.+.+..... .-+ .....|.||-++-. | ..+-.|.|+|..-||.+.+.. ....+
T Consensus 513 Q~aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~ae--------------d---~i~s~ChH~FCrlCi~eyv~~f~~~~n 575 (791)
T KOG1002|consen 513 QAADHPDLVLYSANANLPDENKGEVECGLCHDPAE--------------D---YIESSCHHKFCRLCIKEYVESFMENNN 575 (791)
T ss_pred HhccCcceeeehhhcCCCccccCceeecccCChhh--------------h---hHhhhhhHHHHHHHHHHHHHhhhcccC
Confidence 45566665444211 111 46678999998854 2 224589999999999776642 11223
Q ss_pred CCCcccccccc
Q 016977 258 PSCPICLRLQE 268 (379)
Q Consensus 258 ~tCPLCRs~~~ 268 (379)
-+||+|-..+.
T Consensus 576 vtCP~C~i~Ls 586 (791)
T KOG1002|consen 576 VTCPVCHIGLS 586 (791)
T ss_pred CCCcccccccc
Confidence 79999998885
No 82
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.95 E-value=0.14 Score=52.26 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=20.5
Q ss_pred CCccccCCCCCCCCC---CceeeecCCC
Q 016977 5 EPYWQTNTSFSPPPS---RWDFRFQSEG 29 (379)
Q Consensus 5 ep~wr~n~~~spp~s---~wd~~~~s~g 29 (379)
+=+|.-|.-+.++.+ .|+.|.|..|
T Consensus 100 ~~~~~~~~k~~~~~~~~~~~~l~~q~~~ 127 (355)
T KOG1571|consen 100 GGHWNANSKIFHEGGNEVPFFLRSQTTG 127 (355)
T ss_pred ceeeccceeeccCCCcccceeeccCCcc
Confidence 568888899999887 7888888777
No 83
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=88.78 E-value=0.19 Score=55.97 Aligned_cols=53 Identities=21% Similarity=0.384 Sum_probs=35.3
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCP 261 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCP 261 (379)
.....|+||+....+ |-.| .++..... ..-+.||||.|..|...|+..+. .||
T Consensus 1016 ~ri~~~~~~~~~~~~-C~~C---~l~V~gss-~~Cg~C~Hv~H~sc~~eWf~~gd----~Cp 1068 (1081)
T KOG0309|consen 1016 VRITQCAICKGFTFQ-CAIC---HLAVRGSS-NFCGTCGHVGHTSCMMEWFRTGD----VCP 1068 (1081)
T ss_pred eeeeeccccccceee-eeeE---eeEeeccc-hhhccccccccHHHHHHHHhcCC----cCC
Confidence 456778888888775 2222 22221121 22458999999999999999874 677
No 84
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=87.42 E-value=0.31 Score=54.63 Aligned_cols=56 Identities=27% Similarity=0.707 Sum_probs=39.0
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCC---CCCCCcccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQK---SDPSCPICLRLQE 268 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~---~d~tCPLCRs~~~ 268 (379)
.+-..|.||.+.+.... ++-.=-.|=||||..||..|-....+ ....||-|.....
T Consensus 189 ~~~yeCmIC~e~I~~t~-------------~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTA-------------PVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred cCceEEEEeeeeccccC-------------CceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence 47788999999987211 11111246799999999999765332 2378999996654
No 85
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.07 E-value=0.23 Score=46.67 Aligned_cols=30 Identities=23% Similarity=0.495 Sum_probs=24.6
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhH
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHA 243 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHa 243 (379)
.+..+|.||+|+|.+ .+.++.|||=-+||.
T Consensus 175 ddkGECvICLEdL~~--------------GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 175 DDKGECVICLEDLEA--------------GDTIARLPCLCIYHK 204 (205)
T ss_pred ccCCcEEEEhhhccC--------------CCceeccceEEEeec
Confidence 366789999999983 345899999999995
No 86
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=84.73 E-value=0.41 Score=37.35 Aligned_cols=32 Identities=28% Similarity=0.541 Sum_probs=24.5
Q ss_pred ceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 232 VGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 232 VaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
-.+|||||+.-..|.+-+=- ..||+|-+.++.
T Consensus 20 ~~~~pCgH~I~~~~f~~~rY------ngCPfC~~~~~~ 51 (55)
T PF14447_consen 20 GTVLPCGHLICDNCFPGERY------NGCPFCGTPFEF 51 (55)
T ss_pred cccccccceeeccccChhhc------cCCCCCCCcccC
Confidence 44789999998888765522 379999998874
No 88
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.22 E-value=0.52 Score=46.87 Aligned_cols=58 Identities=24% Similarity=0.332 Sum_probs=41.3
Q ss_pred CCCCCccccccccchhccCCCcccccccCCCCCCc-eeecCC-----CHhhHHHHHhhccCCCCC----CCCCccccccc
Q 016977 198 VPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVV-GVLSCR-----HVFHAECLEQTTPKTQKS----DPSCPICLRLQ 267 (379)
Q Consensus 198 ~p~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vV-aVLPCG-----HVFHaeCLeqWL~k~~~~----d~tCPLCRs~~ 267 (379)
+.+.+-.|=||...=+ |.... -|-||. |--|..||..|+.+++.. .-.||.|..+|
T Consensus 16 ~~e~eR~CWiCF~Tde--------------Dn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY 81 (293)
T KOG3053|consen 16 NQELERCCWICFATDE--------------DNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY 81 (293)
T ss_pred ccccceeEEEEeccCc--------------ccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence 3467778999987633 33222 234775 889999999999876542 24799999999
Q ss_pred cc
Q 016977 268 EE 269 (379)
Q Consensus 268 ~~ 269 (379)
--
T Consensus 82 ii 83 (293)
T KOG3053|consen 82 II 83 (293)
T ss_pred ee
Confidence 74
No 89
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.13 E-value=0.77 Score=43.84 Aligned_cols=37 Identities=24% Similarity=0.406 Sum_probs=28.1
Q ss_pred eecCCCHhhHHHHHhhccC----CCCC---CCCCcccccccccC
Q 016977 234 VLSCRHVFHAECLEQTTPK----TQKS---DPSCPICLRLQEEN 270 (379)
Q Consensus 234 VLPCGHVFHaeCLeqWL~k----~~~~---d~tCPLCRs~~~~~ 270 (379)
-..||.-||.-||..||.. ++.. -..||.|..++..|
T Consensus 187 N~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 187 NIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred ccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 4589999999999999863 2221 25799999988643
No 90
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.85 E-value=0.42 Score=53.26 Aligned_cols=43 Identities=23% Similarity=0.445 Sum_probs=30.7
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCC
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKT 253 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~ 253 (379)
-...|..|.+...- .......++++-|||+||..|+..-..++
T Consensus 783 ~e~rc~~c~~~~l~----------~~~~~~~~~v~~c~h~yhk~c~~~~~~~~ 825 (846)
T KOG2066|consen 783 VEERCSSCFEPNLP----------SGAAFDSVVVFHCGHMYHKECLMMESLRN 825 (846)
T ss_pred ehhhhhhhcccccc----------cCcccceeeEEEccchhhhcccccHHHhc
Confidence 34579999877541 11123458899999999999998776654
No 91
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=83.81 E-value=0.55 Score=51.44 Aligned_cols=47 Identities=28% Similarity=0.721 Sum_probs=37.6
Q ss_pred ccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 203 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 203 ~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
..|.||.+ ++ . ..+.+|||.|-.+|+.+-+...+. ..||+|+....+
T Consensus 455 ~~c~ic~~-~~---------------~--~~it~c~h~~c~~c~~~~i~~~~~--~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LD---------------S--FFITRCGHDFCVECLKKSIQQSEN--APCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cc---------------c--ceeecccchHHHHHHHhccccccC--CCCcHHHHHHHH
Confidence 78999998 33 2 335699999999999998876653 379999998874
No 92
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=83.75 E-value=0.71 Score=33.64 Aligned_cols=26 Identities=27% Similarity=0.874 Sum_probs=15.7
Q ss_pred cCCCHhhHHHHHhhccCCCCCCCCCccc
Q 016977 236 SCRHVFHAECLEQTTPKTQKSDPSCPIC 263 (379)
Q Consensus 236 PCGHVFHaeCLeqWL~k~~~~d~tCPLC 263 (379)
.|+=-+|..|++.++.... ++.||.|
T Consensus 18 ~C~~r~H~~C~~~y~r~~~--~~~CP~C 43 (43)
T PF08746_consen 18 DCNVRLHDDCFKKYFRHRS--NPKCPNC 43 (43)
T ss_dssp -S--EE-HHHHHHHTTT-S--S-B-TTT
T ss_pred ccCchHHHHHHHHHHhcCC--CCCCcCC
Confidence 3666799999999997654 2479988
No 93
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.51 E-value=0.86 Score=47.73 Aligned_cols=55 Identities=25% Similarity=0.357 Sum_probs=38.9
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccC----CCCCCCCCcccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPK----TQKSDPSCPICLRLQE 268 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k----~~~~d~tCPLCRs~~~ 268 (379)
.....|.||.+... ...-...|||+|||-..|+...+.. ...+...||-|.-.-.
T Consensus 182 ~slf~C~ICf~e~~--------------G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~~ 240 (445)
T KOG1814|consen 182 NSLFDCCICFEEQM--------------GQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCGSV 240 (445)
T ss_pred hhcccceeeehhhc--------------CcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCccc
Confidence 46788999998866 1223568899999999999988753 2223357887665443
No 94
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=81.94 E-value=1 Score=42.49 Aligned_cols=54 Identities=22% Similarity=0.413 Sum_probs=37.1
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCC-----CHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCR-----HVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCG-----HVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
.+...|-||..+..... .+ .-+.||. +..|..|++.|+..+. +..|.+|...+.
T Consensus 76 ~~~~~cRIc~~~~~~~~----------~~---~l~~pC~C~g~l~~vH~~cl~~W~~~~~--~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 76 SSGPICRICHEEDEESN----------GL---LLISPCSCKGSLAYVHRSCLEKWFSIKG--NITCEICKSFFI 134 (323)
T ss_pred CCCCcEEEEeccccccc----------cc---ccccCccccCcHHHHHHHHHHhhhcccc--Ceeeecccccce
Confidence 44678999998755110 00 1133554 6679999999998543 479999999875
No 95
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.50 E-value=0.69 Score=50.91 Aligned_cols=87 Identities=17% Similarity=0.416 Sum_probs=55.0
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc---CCCCc-h
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE---NSPDQ-Q 275 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~---~~~~q-~ 275 (379)
.+...|.||+..|.- .... -..|-|||+...+|++.-+.. +|| |+.+... ...+. .
T Consensus 9 ~~~l~c~ic~n~f~~------------~~~~-Pvsl~cghtic~~c~~~lyn~------scp-~~~De~~~~~~~~e~p~ 68 (861)
T KOG3161|consen 9 VLLLLCDICLNLFVV------------QRLE-PVSLQCGHTICGHCVQLLYNA------SCP-TKRDEDSSLMQLKEEPR 68 (861)
T ss_pred HHHhhchHHHHHHHH------------HhcC-cccccccchHHHHHHHhHhhc------cCC-CCccccchhcChhhcch
Confidence 356789999777651 1122 236899999999999988764 799 7776641 12222 2
Q ss_pred hhhhhhccCCc--ccccccCCC---CCCCCCCCCCc
Q 016977 276 VFSRLKNSFPR--LRQSCDNGQ---SRPWGCPQAGG 306 (379)
Q Consensus 276 ~~~~~r~~~p~--l~~~~~~G~---sr~w~~a~ag~ 306 (379)
-+..||..|++ +.=+.+-|. .--|.|-|-||
T Consensus 69 n~alL~~~~d~~~~~~a~~~g~~ispe~~~~~qlg~ 104 (861)
T KOG3161|consen 69 NYALLRREHDAQIVHIAMEAGLRISPEQWSSLQLGD 104 (861)
T ss_pred hHHHHHhhcchhhhhcccCCcccCCHHHHHHHHHHH
Confidence 35566777777 444444553 23466777674
No 96
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=80.06 E-value=0.81 Score=49.54 Aligned_cols=53 Identities=32% Similarity=0.653 Sum_probs=33.4
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
.....|.||... ..|++.....+.+=..|+++||..|+..-- +.||.|-+...
T Consensus 509 ~~gfiCe~Cq~~---------~iiyPF~~~~~~rC~~C~avfH~~C~~r~s-------~~CPrC~R~q~ 561 (580)
T KOG1829|consen 509 GKGFICELCQHN---------DIIYPFETRNTRRCSTCLAVFHKKCLRRKS-------PCCPRCERRQK 561 (580)
T ss_pred cCeeeeeeccCC---------CcccccccccceeHHHHHHHHHHHHHhccC-------CCCCchHHHHH
Confidence 456677777322 233333233345556899999999986432 35999977654
No 97
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.80 E-value=1.9 Score=42.94 Aligned_cols=70 Identities=13% Similarity=0.299 Sum_probs=47.6
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccccCC-------C
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEENS-------P 272 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~~~-------~ 272 (379)
...+.|+|=.-++.. .-.-+++..|||||-..-|.+.-. ..|++|...|.+.. .
T Consensus 109 ~a~fiCPvtgleMng-------------~~~F~~l~~CGcV~SerAlKeika------s~C~~C~a~y~~~dvIvlNg~~ 169 (293)
T KOG3113|consen 109 RARFICPVTGLEMNG-------------KYRFCALRCCGCVFSERALKEIKA------SVCHVCGAAYQEDDVIVLNGTE 169 (293)
T ss_pred cceeecccccceecc-------------eEEEEEEeccceeccHHHHHHhhh------ccccccCCcccccCeEeeCCCH
Confidence 466789998877762 122355679999999999999864 37999999997552 3
Q ss_pred CchhhhhhhccCCccc
Q 016977 273 DQQVFSRLKNSFPRLR 288 (379)
Q Consensus 273 ~q~~~~~~r~~~p~l~ 288 (379)
+|--+.+.|.-.-.++
T Consensus 170 E~~dllk~rme~~kak 185 (293)
T KOG3113|consen 170 EDVDLLKTRMEERKAK 185 (293)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444555553333333
No 98
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=77.88 E-value=1 Score=44.77 Aligned_cols=52 Identities=19% Similarity=0.524 Sum_probs=39.0
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceee--c-CCCHhhHHHHHhhccCCCCCCCCCc--ccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVL--S-CRHVFHAECLEQTTPKTQKSDPSCP--ICLRLQE 268 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVL--P-CGHVFHaeCLeqWL~k~~~~d~tCP--LCRs~~~ 268 (379)
+.+..|+||..+-- -.+.+.+| | |=|-+...|.+..|.... ..|| -|.+-+.
T Consensus 8 ~~d~~CPvCksDrY--------------LnPdik~linPECyHrmCESCvdRIFs~Gp---AqCP~~gC~kILR 64 (314)
T COG5220 8 MEDRRCPVCKSDRY--------------LNPDIKILINPECYHRMCESCVDRIFSRGP---AQCPYKGCGKILR 64 (314)
T ss_pred hhcccCCccccccc--------------cCCCeEEEECHHHHHHHHHHHHHHHhcCCC---CCCCCccHHHHHH
Confidence 45568999986643 12334444 5 999999999999999875 6899 8877665
No 99
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=77.30 E-value=2 Score=33.45 Aligned_cols=34 Identities=24% Similarity=0.587 Sum_probs=24.5
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCcee-ecCCCHhhHHHHHh
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGV-LSCRHVFHAECLEQ 248 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaV-LPCGHVFHaeCLeq 248 (379)
....|.+|.+.|.. .+.+.+ -.||=.||.+|-+.
T Consensus 4 ~~~~C~~Cg~~~~~--------------~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 4 EGCKCPVCGKKFKD--------------GDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred cCccChhhCCcccC--------------CCCEEECCCCCCcccHHHHhh
Confidence 45679999999972 222334 36999999999654
No 100
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=74.99 E-value=1.7 Score=40.52 Aligned_cols=49 Identities=31% Similarity=0.642 Sum_probs=32.0
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRL 266 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~ 266 (379)
..+..|.||... + .|.+.....++.=-.|+-+||.+|..+ . .||-|.+-
T Consensus 150 ~kGfiCe~C~~~-~--------~IfPF~~~~~~~C~~C~~v~H~~C~~~----~-----~CpkC~R~ 198 (202)
T PF13901_consen 150 QKGFICEICNSD-D--------IIFPFQIDTTVRCPKCKSVFHKSCFRK----K-----SCPKCARR 198 (202)
T ss_pred hCCCCCccCCCC-C--------CCCCCCCCCeeeCCcCccccchhhcCC----C-----CCCCcHhH
Confidence 467788888643 2 223332323444457999999999883 1 69999764
No 101
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.13 E-value=0.73 Score=46.65 Aligned_cols=42 Identities=26% Similarity=0.609 Sum_probs=28.2
Q ss_pred CccccccccchhccCCCcccccccCCCCCCceeecCCCHh-hHHHHHhhccCCCCCCCCCcccccccc
Q 016977 202 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVF-HAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 202 ~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVF-HaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
...|+||.+.-. | -..|+|||.- ...|-... ..|||||+-+.
T Consensus 300 ~~LC~ICmDaP~--------------D---CvfLeCGHmVtCt~CGkrm--------~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPR--------------D---CVFLECGHMVTCTKCGKRM--------NECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCc--------------c---eEEeecCcEEeehhhcccc--------ccCchHHHHHH
Confidence 677999997643 2 4478999963 33443222 36999998765
No 102
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.82 E-value=2.2 Score=44.40 Aligned_cols=54 Identities=24% Similarity=0.471 Sum_probs=39.3
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
...+.|||=.+.=+ .++|+. .|.||||.-.+-|++...... ....||.|=....
T Consensus 332 HSvF~CPVlKeqts-------------deNPPm-~L~CGHVISkdAlnrLS~ng~-~sfKCPYCP~e~~ 385 (394)
T KOG2817|consen 332 HSVFICPVLKEQTS-------------DENPPM-MLICGHVISKDALNRLSKNGS-QSFKCPYCPVEQL 385 (394)
T ss_pred cceeecccchhhcc-------------CCCCCe-eeeccceecHHHHHHHhhCCC-eeeeCCCCCcccC
Confidence 46678999765533 255544 789999999999999876543 2468999966554
No 103
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=73.28 E-value=1.7 Score=44.38 Aligned_cols=45 Identities=29% Similarity=0.682 Sum_probs=31.9
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccc
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQ 267 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~ 267 (379)
...-|.-|-.++. |+ -+.+||-|||..+|...=- +..||+|--.+
T Consensus 89 ~VHfCd~Cd~PI~---------IY-------GRmIPCkHvFCl~CAr~~~------dK~Cp~C~d~V 133 (389)
T KOG2932|consen 89 RVHFCDRCDFPIA---------IY-------GRMIPCKHVFCLECARSDS------DKICPLCDDRV 133 (389)
T ss_pred ceEeecccCCcce---------ee-------ecccccchhhhhhhhhcCc------cccCcCcccHH
Confidence 3456888887766 11 2467999999999976533 24799997655
No 104
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=72.16 E-value=2 Score=42.97 Aligned_cols=44 Identities=25% Similarity=0.574 Sum_probs=32.9
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecC--CCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSC--RHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPC--GHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
.+..+|+||.+.|. .-++.| ||.--..|-.+-. ..||.|+..++
T Consensus 46 ~~lleCPvC~~~l~------------------~Pi~QC~nGHlaCssC~~~~~-------~~CP~Cr~~~g 91 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLS------------------PPIFQCDNGHLACSSCRTKVS-------NKCPTCRLPIG 91 (299)
T ss_pred hhhccCchhhccCc------------------ccceecCCCcEehhhhhhhhc-------ccCCccccccc
Confidence 58889999999997 123455 6777777765332 37999999998
No 105
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=69.77 E-value=3.9 Score=44.99 Aligned_cols=162 Identities=21% Similarity=0.280 Sum_probs=80.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcccccccc-----CCCCcccccccccCCCccccCCCCCChhhhhhhhccccccc----
Q 016977 90 GTSANPYSRGSTSSRSDSSESEPKVKSCIS-----SHCNFSSRLSFMSKPIYPLSFPTQTSNREAIDSASTVLSED---- 160 (379)
Q Consensus 90 g~s~~~~s~~s~ss~s~ss~~~~~~k~~~s-----~~rn~~~rrsf~skpi~pL~f~~~~~~~ea~~~a~s~lse~---- 160 (379)
.++....|+.+.+|+++++|-.-+.+-..+ .+.-|.--.-.|.++...++|++.+.-+.|+..+ +|+-+
T Consensus 65 a~s~sSeS~s~s~S~~~g~E~~a~~Rdag~~~~ep~aA~~~~~~~~L~~~~r~~~f~~~~~hRKAi~ks--glqhlAp~~ 142 (1004)
T KOG0782|consen 65 AVSVSSESSSSSASDSEGDEDSATGRDAGNNHLEPSAARFSISNPDLTNCQRKQMFPEMADHRKAIAKS--GLQHLAPDQ 142 (1004)
T ss_pred cccccccccccccccccccccCCCccccccCCCCccccccccCChhHHHHHHhcccHHhhhHHHHHHHH--HHhhcCCCC
Confidence 455555677777777777773222222211 1111111122366677788899999888888664 55554
Q ss_pred CCCCc---c----ccccccCCCCChhhhcccCCCCCcccccCCCCCCCCccccccccchhccCCCcccccccCCCCCCce
Q 016977 161 DTSTP---Q----WEAHRWSSASSSVDFADVSEPFESESFGQSYVPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVG 233 (379)
Q Consensus 161 ~~s~s---~----r~~~~ws~asS~~d~~di~e~~~~es~~~~~~p~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVa 233 (379)
+++.+ + |...+|+.+-.+++-++++... ....|-+=.++-. .++.+.+... .
T Consensus 143 pts~Pv~~~~ke~Rst~dWsE~a~~gEHvWletnv------------sgd~CYvGE~~C~-------~r~~kS~~rR--k 201 (1004)
T KOG0782|consen 143 PTSNPVNKHAKEPRSTRDWSEDAGDGEHVWLETNV------------SGDECYVGEKDCR-------VRFAKSGERR--K 201 (1004)
T ss_pred CCCcchhhcccCccchhhhhhccCCceeEEEeccc------------CCceeeechHHHH-------HHHhhhhhhc--c
Confidence 22311 1 4466887665554444444222 2222322111100 1111112221 1
Q ss_pred eecCCCHhhHHHHHhhccCCCCCCCCCcccccccccCCCCchhhh
Q 016977 234 VLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEENSPDQQVFS 278 (379)
Q Consensus 234 VLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~~~~~q~~~~ 278 (379)
-..|.=|.|..||++..+-+ ..|-.--++++.+.+.++.|+
T Consensus 202 CAaCkIVvHT~CieqLeKiN----frCKptFRe~gsr~~rE~~fv 242 (1004)
T KOG0782|consen 202 CAACKIVVHTNCIEQLEKIN----FRCKPTFREYGSRKTRESGFV 242 (1004)
T ss_pred ceeeeEEEechHHHHHHHhc----cccccchhhccccCcccccch
Confidence 23677788999999875432 445444444444444444433
No 106
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=66.81 E-value=4.3 Score=46.11 Aligned_cols=54 Identities=24% Similarity=0.453 Sum_probs=36.8
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCC---CHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCR---HVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCG---HVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
.+...|-||..+=.. |.+.-.--.|. -..|.+||-+|+.... +..|-+|...+.
T Consensus 10 ~d~~~CRICr~e~~~-------------d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~--~~kCdiChy~~~ 66 (1175)
T COG5183 10 EDKRSCRICRTEDIR-------------DDPLFHPCKCSGSIKYIHRECLMEWMECSG--TKKCDICHYEYK 66 (1175)
T ss_pred ccchhceeecCCCCC-------------CCcCcccccccchhHHHHHHHHHHHHhcCC--Ccceeeecceee
Confidence 356789999866442 33322212333 4589999999998654 468999998885
No 107
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.55 E-value=3.8 Score=42.76 Aligned_cols=47 Identities=19% Similarity=0.358 Sum_probs=36.7
Q ss_pred CCCccccccccc-hhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 200 SDTFKCGLCERF-LSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 200 ~~~~~CaICle~-LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
.++..|+||... .. +..-||+|-=...||.|-+...+ .|-.|+..+.
T Consensus 420 sEd~lCpICyA~pi~------------------Avf~PC~H~SC~~CI~qHlmN~k----~CFfCktTv~ 467 (489)
T KOG4692|consen 420 SEDNLCPICYAGPIN------------------AVFAPCSHRSCYGCITQHLMNCK----RCFFCKTTVI 467 (489)
T ss_pred cccccCcceecccch------------------hhccCCCCchHHHHHHHHHhcCC----eeeEecceee
Confidence 466789999743 21 22459999999999999998764 8999998875
No 108
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=64.71 E-value=2.3 Score=40.29 Aligned_cols=29 Identities=38% Similarity=0.762 Sum_probs=21.3
Q ss_pred ceeecCCCH-hhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 232 VGVLSCRHV-FHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 232 VaVLPCGHV-FHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
|.+|||.|. +-..|-+. + ..||+|+....
T Consensus 171 VlllPCrHl~lC~~C~~~-~-------~~CPiC~~~~~ 200 (207)
T KOG1100|consen 171 VLLLPCRHLCLCGICDES-L-------RICPICRSPKT 200 (207)
T ss_pred EEeecccceEeccccccc-C-------ccCCCCcChhh
Confidence 668899986 45666655 2 37999998765
No 109
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=64.58 E-value=4.9 Score=41.34 Aligned_cols=33 Identities=24% Similarity=0.505 Sum_probs=25.7
Q ss_pred cCCCHhhHHHHHhhccCCCC---------CCCCCcccccccc
Q 016977 236 SCRHVFHAECLEQTTPKTQK---------SDPSCPICLRLQE 268 (379)
Q Consensus 236 PCGHVFHaeCLeqWL~k~~~---------~d~tCPLCRs~~~ 268 (379)
-|.-..-.+|+-+|+..++. ..-+||+||+...
T Consensus 310 ~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 310 YCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred cccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 46677799999999986653 2368999999864
No 110
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=63.25 E-value=4.4 Score=45.43 Aligned_cols=30 Identities=27% Similarity=0.342 Sum_probs=24.3
Q ss_pred cCCCHhhHHHHHhhccCCCCCCCCCcc--ccccccc
Q 016977 236 SCRHVFHAECLEQTTPKTQKSDPSCPI--CLRLQEE 269 (379)
Q Consensus 236 PCGHVFHaeCLeqWL~k~~~~d~tCPL--CRs~~~~ 269 (379)
.|||.-|.+||.+|+.+.. .||. |-.....
T Consensus 798 ~C~H~gH~sh~~sw~~~~s----~ca~~~C~~~c~~ 829 (839)
T KOG0269|consen 798 VCGHGGHDSHLKSWFFKAS----PCAKSICPHLCHY 829 (839)
T ss_pred cccccccHHHHHHHHhcCC----CCccccCCccccc
Confidence 5999999999999998763 6876 7666553
No 111
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=62.85 E-value=2.4 Score=44.28 Aligned_cols=62 Identities=21% Similarity=0.351 Sum_probs=0.0
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCC--CCCCCcccccccc
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQK--SDPSCPICLRLQE 268 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~--~d~tCPLCRs~~~ 268 (379)
....|+|=+..|.= |--..+.+.. +..+-.-|.||||+-.+ .|-.+.+. ...+||+|+..-.
T Consensus 276 ~rpQCPVglnTL~f--p~~~~~~~~~-~~qP~VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~g~ 339 (416)
T PF04710_consen 276 GRPQCPVGLNTLVF--PSKSRKDVPD-ERQPWVYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQVGP 339 (416)
T ss_dssp ----------------------------------------------------------------------
T ss_pred cCCCCCcCCCcccc--cccccccccc-ccCceeeccccceeeec---ccccccccccccccCCCccccCC
Confidence 34558887777651 1111111111 22233468999997643 67653321 2478999997653
No 112
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=60.86 E-value=0.76 Score=33.06 Aligned_cols=30 Identities=30% Similarity=0.693 Sum_probs=21.2
Q ss_pred cCCCHhhHHHHHhhccCCC--CCCCCCccccc
Q 016977 236 SCRHVFHAECLEQTTPKTQ--KSDPSCPICLR 265 (379)
Q Consensus 236 PCGHVFHaeCLeqWL~k~~--~~d~tCPLCRs 265 (379)
.|+-.||..|+.--..... ..+..||.|+.
T Consensus 19 ~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 19 SCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp TTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred CCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 7999999999977654211 12478999864
No 113
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=59.94 E-value=6.7 Score=40.84 Aligned_cols=52 Identities=19% Similarity=0.350 Sum_probs=32.5
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
.++-|++|.+++. ..|. ...--+||--...-|....-..- +..||-||+.+.
T Consensus 13 eed~cplcie~md------------itdk-nf~pc~cgy~ic~fc~~~irq~l---ngrcpacrr~y~ 64 (480)
T COG5175 13 EEDYCPLCIEPMD------------ITDK-NFFPCPCGYQICQFCYNNIRQNL---NGRCPACRRKYD 64 (480)
T ss_pred ccccCcccccccc------------cccC-CcccCCcccHHHHHHHHHHHhhc---cCCChHhhhhcc
Confidence 4445999999986 1122 12234788766666655443322 258999999986
No 114
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=58.55 E-value=3.4 Score=48.59 Aligned_cols=48 Identities=27% Similarity=0.596 Sum_probs=39.0
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
....|.||++.+.. .-++..|||.|-..|+..|+..+ ..||+|+...+
T Consensus 1152 ~~~~c~ic~dil~~----------------~~~I~~cgh~~c~~c~~~~l~~~----s~~~~~ksi~~ 1199 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRN----------------QGGIAGCGHEPCCRCDELWLYAS----SRCPICKSIKG 1199 (1394)
T ss_pred cccchHHHHHHHHh----------------cCCeeeechhHhhhHHHHHHHHh----ccCcchhhhhh
Confidence 45589999999871 13366999999999999999875 58999997765
No 115
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=54.91 E-value=9.5 Score=39.42 Aligned_cols=59 Identities=22% Similarity=0.392 Sum_probs=34.4
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCCCH--hhHHHHHhhccCCCC--CCCCCccccccc
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHV--FHAECLEQTTPKTQK--SDPSCPICLRLQ 267 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHV--FHaeCLeqWL~k~~~--~d~tCPLCRs~~ 267 (379)
....|++=+..|.=.++ -++.+. ....+-.-|.|||| || .|-.+.+. +...||+|+..-
T Consensus 289 ~RPQCPVglnTL~~P~~--~~~~~~-~~~QP~vYl~CGHV~G~H-----~WG~~e~~g~~~r~CPmC~~~g 351 (429)
T KOG3842|consen 289 ARPQCPVGLNTLAFPSK--RRKRVV-DEKQPWVYLNCGHVHGYH-----NWGVRENTGQRERECPMCRVVG 351 (429)
T ss_pred cCCCCCcccceeecccc--cccccc-cccCCeEEEecccccccc-----ccccccccCcccCcCCeeeeec
Confidence 34568888887762111 112222 23334557899998 55 57654432 246899999754
No 116
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.32 E-value=8.7 Score=39.31 Aligned_cols=33 Identities=27% Similarity=0.556 Sum_probs=25.5
Q ss_pred cCCCHhhHHHHHhhccCCCC---------CCCCCcccccccc
Q 016977 236 SCRHVFHAECLEQTTPKTQK---------SDPSCPICLRLQE 268 (379)
Q Consensus 236 PCGHVFHaeCLeqWL~k~~~---------~d~tCPLCRs~~~ 268 (379)
-|......+||-+|+-..+. ..-+||+||+...
T Consensus 324 ~crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 324 ICRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred ccccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 36677889999999976543 2368999999875
No 117
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=53.14 E-value=4.5 Score=42.41 Aligned_cols=68 Identities=16% Similarity=0.349 Sum_probs=0.0
Q ss_pred CccccccccchhccCCC--cccccccCCCCCCceeecCCCHhhHHHHHhhccCC-----CCCCCCCccccccccc
Q 016977 202 TFKCGLCERFLSQRSPW--SSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKT-----QKSDPSCPICLRLQEE 269 (379)
Q Consensus 202 ~~~CaICle~LsqrsP~--ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~-----~~~d~tCPLCRs~~~~ 269 (379)
...|+||+..=.--..| .+..+......+.-+--||||+--+....-|-.-. +..+..||.|...+..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 67899998542100011 22222222222334445999999999999995432 1124689999999874
No 118
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=50.63 E-value=9 Score=28.63 Aligned_cols=32 Identities=31% Similarity=0.696 Sum_probs=12.3
Q ss_pred CceeecCCCHhhHHHH--HhhccCCC-CCCCCCccccc
Q 016977 231 VVGVLSCRHVFHAECL--EQTTPKTQ-KSDPSCPICLR 265 (379)
Q Consensus 231 vVaVLPCGHVFHaeCL--eqWL~k~~-~~d~tCPLCRs 265 (379)
+++-..|.|+ +|. +.|+.... .....||+|.+
T Consensus 15 P~Rg~~C~H~---~CFDl~~fl~~~~~~~~W~CPiC~~ 49 (50)
T PF02891_consen 15 PVRGKNCKHL---QCFDLESFLESNQRTPKWKCPICNK 49 (50)
T ss_dssp EEEETT--SS-----EEHHHHHHHHHHS---B-TTT--
T ss_pred CccCCcCccc---ceECHHHHHHHhhccCCeECcCCcC
Confidence 3666689887 343 33443221 12368999986
No 119
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=50.17 E-value=9.4 Score=39.37 Aligned_cols=53 Identities=25% Similarity=0.530 Sum_probs=37.6
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQ 267 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~ 267 (379)
.....||+=.+.-+ .+++++ .|.||||.-.+-|.+.-..+ .....||.|=..-
T Consensus 334 Hs~FiCPVlKe~~t-------------~ENpP~-ml~CgHVIskeal~~LS~nG-~~~FKCPYCP~~~ 386 (396)
T COG5109 334 HSLFICPVLKELCT-------------DENPPV-MLECGHVISKEALSVLSQNG-VLSFKCPYCPEMS 386 (396)
T ss_pred cceeeccccHhhhc-------------ccCCCe-eeeccceeeHHHHHHHhhcC-cEEeeCCCCCcch
Confidence 46678998776654 244444 78999999999999875543 2357899996443
No 120
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=48.77 E-value=10 Score=39.13 Aligned_cols=49 Identities=16% Similarity=0.194 Sum_probs=37.2
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
.+...|+||++.-. + +.++-.-|-||.-.|+-+.+.+. ..||+=.....
T Consensus 298 ~~~~~CpvClk~r~---------------N-ptvl~vSGyVfCY~Ci~~Yv~~~----~~CPVT~~p~~ 346 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQ---------------N-PTVLEVSGYVFCYPCIFSYVVNY----GHCPVTGYPAS 346 (357)
T ss_pred CccccChhHHhccC---------------C-CceEEecceEEeHHHHHHHHHhc----CCCCccCCcch
Confidence 47788999998744 1 23355779999999999999864 48998666554
No 121
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=47.43 E-value=14 Score=42.25 Aligned_cols=56 Identities=13% Similarity=0.209 Sum_probs=39.6
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeec---CCCHhhHHHHHhhccCC--CCCCCCCcccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLS---CRHVFHAECLEQTTPKT--QKSDPSCPICLRLQE 268 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLP---CGHVFHaeCLeqWL~k~--~~~d~tCPLCRs~~~ 268 (379)
.....|.||..++.. +.+-...+| |+|-|.-.||..|...- ......|++|...++
T Consensus 94 a~s~Ss~~C~~E~S~-------------~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 94 AESDTSPVCEKEHSP-------------DVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred ccccccchhheecCC-------------cccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 466779999888872 222233445 99999999999998632 123367999988876
No 122
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=46.83 E-value=7.6 Score=29.96 Aligned_cols=31 Identities=26% Similarity=0.720 Sum_probs=22.7
Q ss_pred eecCC-CHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 234 VLSCR-HVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 234 VLPCG-HVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
+..|. |..-..||...+...+ .||+|..++-
T Consensus 15 Li~C~dHYLCl~CLt~ml~~s~----~C~iC~~~LP 46 (50)
T PF03854_consen 15 LIKCSDHYLCLNCLTLMLSRSD----RCPICGKPLP 46 (50)
T ss_dssp EEE-SS-EEEHHHHHHT-SSSS----EETTTTEE--
T ss_pred eeeecchhHHHHHHHHHhcccc----CCCcccCcCc
Confidence 56787 9999999999998874 8999998764
No 123
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=46.43 E-value=19 Score=32.99 Aligned_cols=54 Identities=17% Similarity=0.537 Sum_probs=35.3
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHH-HhhccCCCCCCCCCccccccccc
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECL-EQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCL-eqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
....|-||.+.-.+ .+.+.+++ =||-..---|- +-|- ..+ ..+.||+|+..+..
T Consensus 79 ~lYeCnIC~etS~e------e~FLKPne-------CCgY~iCn~Cya~LWK-~~~-~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAE------ERFLKPNE-------CCGYSICNACYANLWK-FCN-LYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccch------hhcCCccc-------ccchHHHHHHHHHHHH-Hcc-cCCCCCcccccccc
Confidence 56789999988652 33443322 38866666665 4463 332 35899999998863
No 124
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=45.71 E-value=19 Score=37.39 Aligned_cols=68 Identities=13% Similarity=0.245 Sum_probs=39.6
Q ss_pred CCccccccccc--hhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCC-----CCCCCCCcccccccc
Q 016977 201 DTFKCGLCERF--LSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKT-----QKSDPSCPICLRLQE 268 (379)
Q Consensus 201 ~~~~CaICle~--LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~-----~~~d~tCPLCRs~~~ 268 (379)
....|++|+.. +.+...=++.-..-....+.-+--||||+--+.=..-|-... +..+..||.|-..+.
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLA 414 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhc
Confidence 46789999754 221110012112211122234445999999888888885431 223589999998875
No 125
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.89 E-value=11 Score=38.73 Aligned_cols=55 Identities=24% Similarity=0.420 Sum_probs=35.9
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCC--CCCCCc--cccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQK--SDPSCP--ICLRLQ 267 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~--~d~tCP--LCRs~~ 267 (379)
.....|.||...+.. .+.. ..++.|+|-|-.+|..+-+..... ..+.|| -|...+
T Consensus 144 ~~~~~C~iC~~e~~~------------~~~~-f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l 202 (384)
T KOG1812|consen 144 LPKEECGICFVEDPE------------AEDM-FSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRL 202 (384)
T ss_pred cccccCccCcccccc------------Hhhh-HHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccC
Confidence 457789999944431 1222 227799999999999998874421 346776 455444
No 126
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=44.05 E-value=16 Score=39.32 Aligned_cols=36 Identities=25% Similarity=0.621 Sum_probs=28.9
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCC
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKT 253 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~ 253 (379)
++..|+||...|.+ ..+|+|+|-....|....+...
T Consensus 3 eelkc~vc~~f~~e-----------------piil~c~h~lc~~ca~~~~~~t 38 (699)
T KOG4367|consen 3 EELKCPVCGSFYRE-----------------PIILPCSHNLCQACARNILVQT 38 (699)
T ss_pred ccccCceehhhccC-----------------ceEeecccHHHHHHHHhhcccC
Confidence 46689999999982 2379999999999998776543
No 127
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=43.09 E-value=19 Score=36.97 Aligned_cols=50 Identities=22% Similarity=0.362 Sum_probs=35.2
Q ss_pred ccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 203 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 203 ~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
..|+||.+++.. .+.. .--.+|||..+..|+...... +..||.|++.+..
T Consensus 250 ~s~p~~~~~~~~------------~d~~-~lP~~~~~~~~l~~~~t~~~~----~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 250 PSCPICYEDLDL------------TDSN-FLPCPCGFRLCLFCHKTISDG----DGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCcccc------------cccc-cccccccccchhhhhhccccc----CCCCCccCCcccc
Confidence 569999998751 1222 112378998888888877654 3699999988864
No 128
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=41.45 E-value=11 Score=41.88 Aligned_cols=50 Identities=22% Similarity=0.589 Sum_probs=39.7
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
....|+||...+.. . ..+.|=|.|-.-|+..-|...+. ...||||+....
T Consensus 20 k~lEc~ic~~~~~~--------------p---~~~kc~~~~l~~~~n~~f~~~~~-~~~~~lc~~~~e 69 (684)
T KOG4362|consen 20 KILECPICLEHVKE--------------P---SLLKCDHIFLKFCLNKLFESKKG-PKQCALCKSDIE 69 (684)
T ss_pred hhccCCceeEEeec--------------c---chhhhhHHHHhhhhhceeeccCc-cccchhhhhhhh
Confidence 56789999999872 1 36799999999999987765432 468999998886
No 129
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=41.21 E-value=8.2 Score=26.45 Aligned_cols=11 Identities=27% Similarity=0.745 Sum_probs=8.3
Q ss_pred CCCcccccccc
Q 016977 258 PSCPICLRLQE 268 (379)
Q Consensus 258 ~tCPLCRs~~~ 268 (379)
..||+|...-.
T Consensus 18 ~~CP~Cg~~~~ 28 (33)
T cd00350 18 WVCPVCGAPKD 28 (33)
T ss_pred CcCcCCCCcHH
Confidence 58999987543
No 130
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=37.86 E-value=13 Score=34.09 Aligned_cols=29 Identities=28% Similarity=0.554 Sum_probs=23.8
Q ss_pred hhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 241 FHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 241 FHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
||..||+.=|..-...+..||.|......
T Consensus 2 ~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~~ 30 (148)
T cd04718 2 FHLCCLRPPLKEVPEGDWICPFCEVEKSG 30 (148)
T ss_pred cccccCCCCCCCCCCCCcCCCCCcCCCCC
Confidence 89999999887665567899999987654
No 131
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.74 E-value=16 Score=38.88 Aligned_cols=45 Identities=27% Similarity=0.590 Sum_probs=34.0
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
.....|.||..... .++-+|- |..|+..|+..+ ..||+|......
T Consensus 477 ~~~~~~~~~~~~~~------------------~~~~~~~---~~~~l~~~~~~~----~~~pl~~~~~~~ 521 (543)
T KOG0802|consen 477 EPNDVCAICYQEMS------------------ARITPCS---HALCLRKWLYVQ----EVCPLCHTYMKE 521 (543)
T ss_pred cccCcchHHHHHHH------------------hcccccc---chhHHHhhhhhc----cccCCCchhhhc
Confidence 35567999987752 2344666 999999999876 489999988764
No 132
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=35.79 E-value=31 Score=25.63 Aligned_cols=12 Identities=33% Similarity=0.858 Sum_probs=9.7
Q ss_pred Cccccccccchh
Q 016977 202 TFKCGLCERFLS 213 (379)
Q Consensus 202 ~~~CaICle~Ls 213 (379)
...||.|.+.|+
T Consensus 2 ~f~CP~C~~~~~ 13 (54)
T PF05605_consen 2 SFTCPYCGKGFS 13 (54)
T ss_pred CcCCCCCCCccC
Confidence 467999999766
No 133
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=34.69 E-value=16 Score=24.37 Aligned_cols=10 Identities=20% Similarity=0.521 Sum_probs=6.1
Q ss_pred cccccccchh
Q 016977 204 KCGLCERFLS 213 (379)
Q Consensus 204 ~CaICle~Ls 213 (379)
.|+-|...+.
T Consensus 2 ~CP~C~~~V~ 11 (26)
T PF10571_consen 2 TCPECGAEVP 11 (26)
T ss_pred cCCCCcCCch
Confidence 4666766654
No 134
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.36 E-value=8.3 Score=37.04 Aligned_cols=53 Identities=26% Similarity=0.488 Sum_probs=39.5
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeec--------CCCHhhHHHHHhhccCCCCCCCCCccccccc
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLS--------CRHVFHAECLEQTTPKTQKSDPSCPICLRLQ 267 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLP--------CGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~ 267 (379)
....|.||...|.. +....+-.++. |||..-..|++.-+.... ..||.|+...
T Consensus 206 ~~~~c~ic~~~~~~-----------n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~---~~cp~~~~~~ 266 (296)
T KOG4185|consen 206 IEKLCEICERIYSE-----------NDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAG---IKCPFCTWSH 266 (296)
T ss_pred HHHHHHHHHHHhhc-----------cccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhh---hcCCccccee
Confidence 34669999999872 11233345666 999999999999987654 6899999753
No 135
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=33.74 E-value=5.8 Score=29.55 Aligned_cols=34 Identities=21% Similarity=0.514 Sum_probs=15.1
Q ss_pred HHhhccCCCCCCCCCcccccccccCCCCchhhhhh
Q 016977 246 LEQTTPKTQKSDPSCPICLRLQEENSPDQQVFSRL 280 (379)
Q Consensus 246 LeqWL~k~~~~d~tCPLCRs~~~~~~~~q~~~~~~ 280 (379)
+++++..-...+..||+|.+.+..... +-++..+
T Consensus 9 ~~k~i~~l~~~~~~CPlC~r~l~~e~~-~~li~~~ 42 (54)
T PF04423_consen 9 LKKYIEELKEAKGCCPLCGRPLDEEHR-QELIKKY 42 (54)
T ss_dssp HHHHHHHHTT-SEE-TTT--EE-HHHH-HHHHHHH
T ss_pred HHHHHHHHhcCCCcCCCCCCCCCHHHH-HHHHHHH
Confidence 444444322223489999999985333 4444433
No 136
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=31.77 E-value=49 Score=27.84 Aligned_cols=57 Identities=18% Similarity=0.419 Sum_probs=23.2
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
...+.|-||.+.+-- ..+++. =|+.--|+--.-..|.+-=....+ ..||-|+..+..
T Consensus 7 ~~~qiCqiCGD~VGl---------~~~Ge~-FVAC~eC~fPvCr~CyEYErkeg~---q~CpqCkt~ykr 63 (80)
T PF14569_consen 7 LNGQICQICGDDVGL---------TENGEV-FVACHECAFPVCRPCYEYERKEGN---QVCPQCKTRYKR 63 (80)
T ss_dssp -SS-B-SSS--B--B----------SSSSB---S-SSS-----HHHHHHHHHTS----SB-TTT--B---
T ss_pred cCCcccccccCcccc---------CCCCCE-EEEEcccCCccchhHHHHHhhcCc---ccccccCCCccc
Confidence 577889999998751 112221 233446777777888887666654 689999998875
No 137
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=30.29 E-value=9.9 Score=38.83 Aligned_cols=15 Identities=20% Similarity=0.452 Sum_probs=11.2
Q ss_pred cCCCHhhHHHHHhhc
Q 016977 236 SCRHVFHAECLEQTT 250 (379)
Q Consensus 236 PCGHVFHaeCLeqWL 250 (379)
.=-||||.+|..-.+
T Consensus 111 Aqd~VYHl~CF~C~i 125 (383)
T KOG4577|consen 111 AQDFVYHLHCFACFI 125 (383)
T ss_pred hhcceeehhhhhhHh
Confidence 557999999975444
No 138
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=28.52 E-value=17 Score=33.25 Aligned_cols=38 Identities=18% Similarity=0.244 Sum_probs=26.0
Q ss_pred cCCCHhhHHHHHhhccCCCC-------CCCCCcccccccccCCCCchhhh
Q 016977 236 SCRHVFHAECLEQTTPKTQK-------SDPSCPICLRLQEENSPDQQVFS 278 (379)
Q Consensus 236 PCGHVFHaeCLeqWL~k~~~-------~d~tCPLCRs~~~~~~~~q~~~~ 278 (379)
.|||.| +.||..... .-.+||+|......+..--|.+.
T Consensus 9 ~~gH~F-----EgWF~ss~~fd~Q~~~glv~CP~Cgs~~V~K~lmAP~v~ 53 (148)
T PF06676_consen 9 ENGHEF-----EGWFRSSAAFDRQQARGLVSCPVCGSTEVSKALMAPAVA 53 (148)
T ss_pred CCCCcc-----ceecCCHHHHHHHHHcCCccCCCCCCCeEeeecCCCeec
Confidence 466777 778875321 23789999999887666555554
No 139
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=28.04 E-value=8.9 Score=40.69 Aligned_cols=16 Identities=31% Similarity=0.735 Sum_probs=12.5
Q ss_pred CCCccccccccchhcc
Q 016977 200 SDTFKCGLCERFLSQR 215 (379)
Q Consensus 200 ~~~~~CaICle~Lsqr 215 (379)
++.++|..|.+.|...
T Consensus 300 v~CFtC~~C~r~L~Gq 315 (468)
T KOG1701|consen 300 VQCFTCRTCRRQLAGQ 315 (468)
T ss_pred ccceehHhhhhhhccc
Confidence 5778899998888643
No 140
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=26.16 E-value=8.5 Score=31.42 Aligned_cols=41 Identities=22% Similarity=0.396 Sum_probs=22.4
Q ss_pred ccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 203 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 203 ~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
..|+.|..+|.. . . +|.+-..|....... ..||-|...+..
T Consensus 2 ~~CP~C~~~L~~-----------------~---~-~~~~C~~C~~~~~~~-----a~CPdC~~~Le~ 42 (70)
T PF07191_consen 2 NTCPKCQQELEW-----------------Q---G-GHYHCEACQKDYKKE-----AFCPDCGQPLEV 42 (70)
T ss_dssp -B-SSS-SBEEE-----------------E---T-TEEEETTT--EEEEE-----EE-TTT-SB-EE
T ss_pred CcCCCCCCccEE-----------------e---C-CEEECccccccceec-----ccCCCcccHHHH
Confidence 469999999871 1 0 555566677766554 479999998874
No 141
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=25.36 E-value=37 Score=33.33 Aligned_cols=50 Identities=24% Similarity=0.544 Sum_probs=38.4
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
.....|-+|.+.+-| .++--.|+=-||..|++..+.+. +.||-|.--+..
T Consensus 179 dnlk~Cn~Ch~LvIq----------------g~rCg~c~i~~h~~c~qty~q~~----~~cphc~d~w~h 228 (235)
T KOG4718|consen 179 DNLKNCNLCHCLVIQ----------------GIRCGSCNIQYHRGCIQTYLQRR----DICPHCGDLWTH 228 (235)
T ss_pred HHHHHHhHhHHHhhe----------------eeccCcccchhhhHHHHHHhccc----CcCCchhcccCc
Confidence 466789999988652 13334788889999999999874 689999776653
No 142
>PF12088 DUF3565: Protein of unknown function (DUF3565); InterPro: IPR021948 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 30 to 78 amino acids in length. This protein has two conserved sequence motifs: WVA and CGH.
Probab=25.35 E-value=36 Score=27.32 Aligned_cols=24 Identities=25% Similarity=0.192 Sum_probs=17.3
Q ss_pred CCCCceeecCCCHhhHHHHHhhcc
Q 016977 228 DMPVVGVLSCRHVFHAECLEQTTP 251 (379)
Q Consensus 228 D~~vVaVLPCGHVFHaeCLeqWL~ 251 (379)
+..-|+.|.|||.=|..=--.|..
T Consensus 8 e~hWVA~L~CGH~QHvRH~PPw~~ 31 (61)
T PF12088_consen 8 EGHWVAELSCGHTQHVRHDPPWQN 31 (61)
T ss_pred cCCEEEEecccccccccCCCCCcc
Confidence 566799999999988654444443
No 143
>PF01492 Gemini_C4: Geminivirus C4 protein; InterPro: IPR002488 This family consists of the N-terminal region of geminivirus C4 or AC4 proteins. In Tomato yellow leaf curl virus the C4 protein is necessary for efficient spreading of the virus in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) [].
Probab=24.53 E-value=71 Score=27.08 Aligned_cols=53 Identities=30% Similarity=0.302 Sum_probs=35.7
Q ss_pred cCCCCCCCC-------CCCCcccccccccCcccCcCcCCCCcccccccccccCCCCCCCCCCCC
Q 016977 45 TSSNSKESK-------SGWTPPAIQEITIDGYETPTRRDPVSTQFSFTPAIEGTSANPYSRGST 101 (379)
Q Consensus 45 ~ss~~k~~~-------~~w~~p~~q~~~~~~~~~~~~~~p~~~~~~~~~~~~g~s~~~~s~~s~ 101 (379)
.++|+|+.. .-|-|+..|-|+|--|-....+....- |-.+.++..+...+.|+
T Consensus 8 ~~~nSk~~s~ari~DsSt~~p~~gq~isi~t~Rel~~~~~S~~----Ts~rte~~~ng~~sRS~ 67 (85)
T PF01492_consen 8 CSSNSKGNSSARITDSSTWYPQPGQHISIRTFRELNPAPTSSP----TSRRTETPSNGENSRSM 67 (85)
T ss_pred EeccCCCCCCCCccceeeccCCCCCccccccccccCCCCCCCc----cccceeeccCccccccH
Confidence 467777766 349999999999998877655554333 44556666666655444
No 144
>PLN03166 60S ribosomal protein L34; Provisional
Probab=24.33 E-value=60 Score=27.92 Aligned_cols=48 Identities=17% Similarity=0.210 Sum_probs=30.6
Q ss_pred CCCCCcccccccccCCCCchhhhhhhccCCcccccccCCCCCCCCCCCCCccc
Q 016977 256 SDPSCPICLRLQEENSPDQQVFSRLKNSFPRLRQSCDNGQSRPWGCPQAGGCV 308 (379)
Q Consensus 256 ~d~tCPLCRs~~~~~~~~q~~~~~~r~~~p~l~~~~~~G~sr~w~~a~ag~~v 308 (379)
..+.|+.|...+.......|...+.+ -.+.++.-.+|++|+...+.||
T Consensus 40 ~~pkC~~cg~~L~Gi~~~Rp~~~~~~-----~lsK~~K~vsRaYGG~lc~~cv 87 (96)
T PLN03166 40 SGPKCPVTGKRIQGIPHLRPAEYKRS-----RLSRNRRTVNRAYGGVLSGSAV 87 (96)
T ss_pred CCCcCCCCCCccCCccCCChhhhhhh-----hcccCcCccccCcCCcccHHHH
Confidence 44789999998865322222221100 1145667779999999888887
No 145
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.26 E-value=45 Score=34.58 Aligned_cols=53 Identities=23% Similarity=0.473 Sum_probs=37.2
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCC----CCCc--ccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSD----PSCP--ICLRLQE 268 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d----~tCP--LCRs~~~ 268 (379)
.....|.||.+.+. . .+..+.|||.|-..|....+.++-..+ .+|| -|...++
T Consensus 68 ~~~~~c~ic~~~~~--------------~--~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~ 126 (444)
T KOG1815|consen 68 KGDVQCGICVESYD--------------G--EIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVG 126 (444)
T ss_pred CccccCCcccCCCc--------------c--hhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCC
Confidence 46678999998876 1 355679999999999999876532111 3455 5666665
No 146
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=24.09 E-value=53 Score=33.09 Aligned_cols=56 Identities=20% Similarity=0.385 Sum_probs=34.1
Q ss_pred ccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhh-ccCCCC----CCCCCcccccccc
Q 016977 203 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQT-TPKTQK----SDPSCPICLRLQE 268 (379)
Q Consensus 203 ~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqW-L~k~~~----~d~tCPLCRs~~~ 268 (379)
..|-||.+.+.+.... ++ ... ---|.=++|..||-.- +..... ....||.|.+.+.
T Consensus 183 ~~celc~~ei~e~~~~----~a--~c~----~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~~ 243 (276)
T KOG3005|consen 183 VECELCEKEILETDWS----RA--TCP----NPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFLS 243 (276)
T ss_pred hhhHHHHHHhccccce----ec--cCC----CCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhceee
Confidence 5899999998532210 00 011 0138999999999883 322211 1357999999664
No 147
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=24.00 E-value=39 Score=33.76 Aligned_cols=50 Identities=28% Similarity=0.512 Sum_probs=33.2
Q ss_pred ccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccc
Q 016977 207 LCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPIC 263 (379)
Q Consensus 207 ICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLC 263 (379)
|=.+.|.-++||+-..|+- + +..-.|||||-.+=|.+.+.... ...||+=
T Consensus 170 i~~e~fs~rdPis~~~I~n----P-viSkkC~HvydrDsI~~~l~~~~--~i~CPv~ 219 (262)
T KOG2979|consen 170 IGQEVFSNRDPISKKPIVN----P-VISKKCGHVYDRDSIMQILCDEI--TIRCPVL 219 (262)
T ss_pred hhhhhhcccCchhhhhhhc----h-hhhcCcCcchhhhhHHHHhccCc--eeecccc
Confidence 3345556666766444442 2 44568999999999999987632 2578873
No 148
>PLN02189 cellulose synthase
Probab=22.85 E-value=59 Score=38.04 Aligned_cols=56 Identities=21% Similarity=0.421 Sum_probs=37.9
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
...+.|-||.+++.- ..+++ .=|+---|+---...|.|-=-++.+ ..||-|+..+.
T Consensus 32 ~~~~~C~iCgd~vg~---------~~~g~-~fvaC~~C~fpvCr~Cyeyer~eg~---q~CpqCkt~Y~ 87 (1040)
T PLN02189 32 LDGQVCEICGDEIGL---------TVDGD-LFVACNECGFPVCRPCYEYERREGT---QNCPQCKTRYK 87 (1040)
T ss_pred ccCccccccccccCc---------CCCCC-EEEeeccCCCccccchhhhhhhcCC---ccCcccCCchh
Confidence 567799999999761 11222 1233345777788899965444443 68999999997
No 149
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=22.37 E-value=83 Score=36.92 Aligned_cols=56 Identities=20% Similarity=0.427 Sum_probs=38.0
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
...+.|-||.+++-- ..+|+. =|+---|+--....|.+-=..+.+ ..||-|+..+.
T Consensus 13 ~~~~~c~iCGd~vg~---------~~~Ge~-FVAC~eC~fpvCr~cyeye~~~g~---~~cp~c~t~y~ 68 (1044)
T PLN02915 13 ADAKTCRVCGDEVGV---------KEDGQP-FVACHVCGFPVCKPCYEYERSEGN---QCCPQCNTRYK 68 (1044)
T ss_pred CCcchhhccccccCc---------CCCCCE-EEEeccCCCccccchhhhhhhcCC---ccCCccCCchh
Confidence 477889999999761 122222 244446777788899954444433 68999999997
No 150
>PF15616 TerY-C: TerY-C metal binding domain
Probab=22.31 E-value=31 Score=31.12 Aligned_cols=41 Identities=22% Similarity=0.602 Sum_probs=29.6
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
....||-|...+. .++-.||++| |++. +. ..+||-|.+...
T Consensus 76 g~PgCP~CGn~~~------------------fa~C~CGkl~---Ci~g--~~----~~~CPwCg~~g~ 116 (131)
T PF15616_consen 76 GAPGCPHCGNQYA------------------FAVCGCGKLF---CIDG--EG----EVTCPWCGNEGS 116 (131)
T ss_pred CCCCCCCCcChhc------------------EEEecCCCEE---EeCC--CC----CEECCCCCCeee
Confidence 3456999998866 5566899887 6655 21 258999998775
No 151
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=22.29 E-value=32 Score=37.70 Aligned_cols=34 Identities=18% Similarity=0.466 Sum_probs=20.0
Q ss_pred ecCCCHhh--HHHHHh-hccCCCC--CCCCCcccccccc
Q 016977 235 LSCRHVFH--AECLEQ-TTPKTQK--SDPSCPICLRLQE 268 (379)
Q Consensus 235 LPCGHVFH--aeCLeq-WL~k~~~--~d~tCPLCRs~~~ 268 (379)
+||.+..+ ..|.+. |+...+. ....||+|.+...
T Consensus 318 ~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~ 356 (636)
T KOG2169|consen 318 LPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAP 356 (636)
T ss_pred cCCcccccccceecchhhhHHhccCCCeeeCccCCcccc
Confidence 34444433 378766 4433222 3467999999875
No 152
>PF01199 Ribosomal_L34e: Ribosomal protein L34e; InterPro: IPR008195 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins belong to the L34e family. These include, vertebrate L34, mosquito L31 [], plant L34 [], yeast putative ribosomal protein YIL052c and archaebacterial L34e.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZR_i 3IZS_i 4A19_L 4A1D_L 4A18_L 4A1B_L.
Probab=22.24 E-value=24 Score=30.14 Aligned_cols=46 Identities=22% Similarity=0.327 Sum_probs=23.9
Q ss_pred CCCCCcccccccccCCCCchhhhhhhccCCcccccccCCCCCCCCCCCCCccc
Q 016977 256 SDPSCPICLRLQEENSPDQQVFSRLKNSFPRLRQSCDNGQSRPWGCPQAGGCV 308 (379)
Q Consensus 256 ~d~tCPLCRs~~~~~~~~q~~~~~~r~~~p~l~~~~~~G~sr~w~~a~ag~~v 308 (379)
..+.|+.|...+.. +-++|..--.-.+.++.-.+|++|+...+.||
T Consensus 40 ~~pkC~~cg~~L~G-------i~~~rp~~~~rl~k~~k~vsRaYGG~lc~~cv 85 (94)
T PF01199_consen 40 KKPKCGDCGKPLNG-------IPALRPVELRRLSKRQKTVSRAYGGSLCHKCV 85 (94)
T ss_dssp T--BSTSSS-BSSS-------S-SS-SSTTGTS-CHCH--CCTSSSS-HHHHH
T ss_pred CCCCcCccCCcccc-------cccccHHHHhhcccCCCCCCCCCCccchHHHH
Confidence 34789999998875 22222111111245566779999988877777
No 153
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=21.67 E-value=43 Score=26.63 Aligned_cols=13 Identities=31% Similarity=0.907 Sum_probs=11.0
Q ss_pred CCCCccccccccc
Q 016977 257 DPSCPICLRLQEE 269 (379)
Q Consensus 257 d~tCPLCRs~~~~ 269 (379)
.+.||||......
T Consensus 39 ~p~CPlC~s~M~~ 51 (59)
T PF14169_consen 39 EPVCPLCKSPMVS 51 (59)
T ss_pred CccCCCcCCcccc
Confidence 4899999998864
No 154
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=20.97 E-value=1.1e+02 Score=35.32 Aligned_cols=16 Identities=38% Similarity=0.852 Sum_probs=14.2
Q ss_pred CceeeecCCCCCCcCC
Q 016977 20 RWDFRFQSEGLPYGSN 35 (379)
Q Consensus 20 ~wd~~~~s~gl~~~~~ 35 (379)
.-||.+-+-|||||-.
T Consensus 421 ~l~~~i~st~~p~g~~ 436 (958)
T KOG1074|consen 421 HLQYVITSTGLPYGPS 436 (958)
T ss_pred hhcceeeccccCCCCC
Confidence 7889999999999976
No 155
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.76 E-value=59 Score=36.34 Aligned_cols=50 Identities=30% Similarity=0.585 Sum_probs=36.5
Q ss_pred cccccccchhccCCCcccccccCCCCCCceeecCCC-HhhHHHHHhhccCCC--CCCCCCcccccccccC
Q 016977 204 KCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRH-VFHAECLEQTTPKTQ--KSDPSCPICLRLQEEN 270 (379)
Q Consensus 204 ~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGH-VFHaeCLeqWL~k~~--~~d~tCPLCRs~~~~~ 270 (379)
.|+||-.-+. .++.-.||| .--+.|.-+.....+ +....||+|+..++.+
T Consensus 2 ~c~ic~~s~~-----------------~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~~ 54 (669)
T KOG2231|consen 2 SCAICAFSPD-----------------FVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVETK 54 (669)
T ss_pred CcceeecCcc-----------------ccccccccccccchhhhhhhhhhcccccccccCcccccceeee
Confidence 5899987655 355669999 889999877654332 2246789999988754
No 156
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=20.25 E-value=44 Score=21.68 Aligned_cols=37 Identities=24% Similarity=0.542 Sum_probs=22.1
Q ss_pred cccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccc
Q 016977 204 KCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQ 267 (379)
Q Consensus 204 ~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~ 267 (379)
.|..|.+.+.. . ...+..=+..||.+|+ .|..|...+
T Consensus 1 ~C~~C~~~i~~--------------~-~~~~~~~~~~~H~~Cf------------~C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIRG--------------G-ELVLRALGKVWHPECF------------KCSKCGKPL 37 (39)
T ss_pred CccccCCcccC--------------C-cEEEEeCCccccccCC------------CCcccCCcC
Confidence 37788887761 1 1222334788998874 466666554
Done!