Query 016977
Match_columns 379
No_of_seqs 195 out of 695
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 06:55:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016977.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016977hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v87_A Deltex protein 2; ring- 99.5 8.9E-15 3.1E-19 118.4 3.9 76 201-276 24-101 (114)
2 1x4j_A Ring finger protein 38; 99.4 8.7E-14 3E-18 105.5 3.1 52 200-269 21-72 (75)
3 2ecl_A Ring-box protein 2; RNF 99.4 1.5E-13 5.1E-18 107.1 3.9 63 201-269 14-76 (81)
4 1iym_A EL5; ring-H2 finger, ub 99.4 1.9E-13 6.4E-18 97.4 2.8 51 200-268 3-54 (55)
5 2kiz_A E3 ubiquitin-protein li 99.4 2.5E-13 8.6E-18 101.0 3.3 52 200-269 12-63 (69)
6 2ep4_A Ring finger protein 24; 99.4 2.2E-13 7.4E-18 102.6 2.7 52 200-269 13-64 (74)
7 2l0b_A E3 ubiquitin-protein li 99.3 3E-13 1E-17 107.0 2.6 51 200-268 38-88 (91)
8 3dpl_R Ring-box protein 1; ubi 99.3 4.8E-13 1.6E-17 110.9 3.4 64 201-268 36-100 (106)
9 2ect_A Ring finger protein 126 99.3 3.7E-13 1.3E-17 102.2 2.1 52 200-269 13-64 (78)
10 2ecm_A Ring finger and CHY zin 99.3 4.1E-13 1.4E-17 95.4 2.1 51 201-268 4-54 (55)
11 2ea6_A Ring finger protein 4; 99.3 1.8E-12 6.3E-17 95.1 3.2 56 200-269 13-68 (69)
12 3ng2_A RNF4, snurf, ring finge 99.3 1.4E-12 4.9E-17 96.7 2.3 56 200-269 8-63 (71)
13 2xeu_A Ring finger protein 4; 99.2 2.7E-12 9.3E-17 92.9 2.2 55 201-269 2-56 (64)
14 2d8t_A Dactylidin, ring finger 99.2 4E-12 1.4E-16 95.6 2.8 49 200-269 13-61 (71)
15 4a0k_B E3 ubiquitin-protein li 99.2 1.8E-12 6.1E-17 109.9 0.4 64 201-268 47-111 (117)
16 2ct2_A Tripartite motif protei 99.2 1.7E-11 5.9E-16 94.0 5.5 56 200-269 13-68 (88)
17 1g25_A CDK-activating kinase a 99.2 1.2E-11 4.1E-16 91.3 3.6 54 200-269 1-55 (65)
18 2ecn_A Ring finger protein 141 99.2 1.2E-11 3.9E-16 92.2 3.0 48 200-269 13-60 (70)
19 2d8s_A Cellular modulator of i 99.1 1.2E-11 4.1E-16 97.8 2.5 53 200-269 13-70 (80)
20 1chc_A Equine herpes virus-1 r 99.1 9.7E-12 3.3E-16 91.9 1.3 49 201-269 4-52 (68)
21 2djb_A Polycomb group ring fin 99.1 2.3E-11 7.8E-16 91.7 2.6 50 200-269 13-62 (72)
22 2ysl_A Tripartite motif-contai 99.1 7.5E-11 2.6E-15 88.0 5.4 52 200-269 18-69 (73)
23 2csy_A Zinc finger protein 183 99.1 2.9E-11 1E-15 92.7 3.1 60 201-281 14-74 (81)
24 2ecy_A TNF receptor-associated 99.1 4.4E-11 1.5E-15 88.5 3.5 50 200-269 13-62 (66)
25 4ayc_A E3 ubiquitin-protein li 99.0 4.7E-11 1.6E-15 100.7 2.2 48 202-270 53-100 (138)
26 4ap4_A E3 ubiquitin ligase RNF 99.0 6.3E-11 2.2E-15 96.0 2.8 56 200-269 5-60 (133)
27 3fl2_A E3 ubiquitin-protein li 99.0 1.4E-10 4.9E-15 95.6 4.0 49 201-269 51-99 (124)
28 2ysj_A Tripartite motif-contai 99.0 2.6E-10 8.8E-15 83.5 4.6 46 200-263 18-63 (63)
29 2egp_A Tripartite motif-contai 99.0 1E-10 3.4E-15 88.3 2.4 53 200-269 10-65 (79)
30 1t1h_A Gspef-atpub14, armadill 99.0 1.3E-10 4.3E-15 88.2 2.8 50 200-269 6-55 (78)
31 2ecj_A Tripartite motif-contai 99.0 1.9E-10 6.4E-15 82.2 3.1 46 200-263 13-58 (58)
32 3lrq_A E3 ubiquitin-protein li 99.0 7.4E-11 2.5E-15 94.7 0.8 50 201-269 21-70 (100)
33 2yur_A Retinoblastoma-binding 99.0 1.8E-10 6.2E-15 87.5 2.9 50 200-268 13-63 (74)
34 2ecw_A Tripartite motif-contai 99.0 2.2E-10 7.5E-15 86.6 2.7 53 200-269 17-71 (85)
35 2ct0_A Non-SMC element 1 homol 98.9 6.5E-10 2.2E-14 87.6 5.0 59 198-274 11-69 (74)
36 4ap4_A E3 ubiquitin ligase RNF 98.9 3.3E-10 1.1E-14 91.7 3.0 56 200-269 70-125 (133)
37 2y43_A E3 ubiquitin-protein li 98.9 2.6E-10 8.9E-15 90.4 2.2 49 201-269 21-69 (99)
38 2ecv_A Tripartite motif-contai 98.9 2E-10 7E-15 86.8 1.5 53 200-269 17-71 (85)
39 2ckl_B Ubiquitin ligase protei 98.9 2.7E-10 9.2E-15 98.1 2.3 50 201-269 53-102 (165)
40 2ckl_A Polycomb group ring fin 98.9 3E-10 1E-14 91.6 2.3 49 201-269 14-62 (108)
41 3l11_A E3 ubiquitin-protein li 98.9 2.3E-10 7.7E-15 93.0 1.1 49 200-268 13-61 (115)
42 1z6u_A NP95-like ring finger p 98.9 7.6E-10 2.6E-14 95.7 3.9 50 201-270 77-126 (150)
43 3ztg_A E3 ubiquitin-protein li 98.9 5.8E-10 2E-14 87.0 2.7 50 200-268 11-61 (92)
44 1jm7_A BRCA1, breast cancer ty 98.8 9.1E-10 3.1E-14 88.0 2.2 51 201-269 20-70 (112)
45 1rmd_A RAG1; V(D)J recombinati 98.7 2.4E-09 8.2E-14 87.1 2.4 50 201-270 22-71 (116)
46 3hct_A TNF receptor-associated 98.7 1.8E-09 6.2E-14 88.6 1.6 50 200-269 16-65 (118)
47 1e4u_A Transcriptional repress 98.7 6.2E-09 2.1E-13 81.7 4.3 54 200-269 9-62 (78)
48 2y1n_A E3 ubiquitin-protein li 98.6 1.5E-08 5.1E-13 101.0 2.7 49 201-269 331-379 (389)
49 1jm7_B BARD1, BRCA1-associated 98.6 7.6E-09 2.6E-13 84.8 0.1 46 201-269 21-67 (117)
50 1bor_A Transcription factor PM 98.5 7.2E-09 2.5E-13 75.4 -0.4 45 201-269 5-49 (56)
51 3knv_A TNF receptor-associated 98.5 1.1E-08 3.9E-13 87.6 0.7 49 200-268 29-77 (141)
52 4ic3_A E3 ubiquitin-protein li 98.5 2.7E-08 9.3E-13 76.1 1.5 44 201-269 23-67 (74)
53 2kr4_A Ubiquitin conjugation f 98.5 5E-08 1.7E-12 76.8 2.4 48 201-269 13-60 (85)
54 2kre_A Ubiquitin conjugation f 98.4 6.8E-08 2.3E-12 78.7 2.9 49 200-269 27-75 (100)
55 1wgm_A Ubiquitin conjugation f 98.4 8.7E-08 3E-12 77.8 3.1 48 201-269 21-69 (98)
56 2c2l_A CHIP, carboxy terminus 98.4 5.7E-08 1.9E-12 87.4 1.8 50 200-269 206-255 (281)
57 3hcs_A TNF receptor-associated 98.3 9.9E-08 3.4E-12 82.3 1.7 50 200-269 16-65 (170)
58 2vje_A E3 ubiquitin-protein li 98.3 1.3E-07 4.3E-12 70.9 1.8 49 200-269 6-57 (64)
59 2yu4_A E3 SUMO-protein ligase 98.3 1.8E-07 6.2E-12 74.6 2.4 50 200-266 5-59 (94)
60 2ecg_A Baculoviral IAP repeat- 98.2 3.1E-07 1.1E-11 70.0 2.0 44 201-269 24-68 (75)
61 3k1l_B Fancl; UBC, ring, RWD, 98.2 3.6E-07 1.2E-11 90.8 3.0 90 169-269 268-373 (381)
62 2vje_B MDM4 protein; proto-onc 98.2 2.9E-07 1E-11 68.7 1.7 49 200-269 5-56 (63)
63 1vyx_A ORF K3, K3RING; zinc-bi 98.2 4.3E-07 1.5E-11 68.2 1.6 49 201-268 5-58 (60)
64 2f42_A STIP1 homology and U-bo 98.1 1.1E-06 3.8E-11 79.2 2.2 50 200-269 104-153 (179)
65 2yho_A E3 ubiquitin-protein li 98.0 1.6E-06 5.6E-11 67.6 1.4 44 201-269 17-61 (79)
66 2ea5_A Cell growth regulator w 98.0 3E-06 1E-10 64.4 2.7 45 200-269 13-58 (68)
67 1wim_A KIAA0161 protein; ring 98.0 1.3E-06 4.6E-11 68.9 0.8 52 201-266 4-61 (94)
68 3t6p_A Baculoviral IAP repeat- 97.9 2.5E-06 8.5E-11 83.3 0.8 44 201-269 294-338 (345)
69 3htk_C E3 SUMO-protein ligase 97.8 4.9E-06 1.7E-10 79.6 2.0 51 200-268 179-231 (267)
70 2bay_A PRE-mRNA splicing facto 97.7 9.5E-06 3.2E-10 60.9 1.1 47 202-269 3-50 (61)
71 3nw0_A Non-structural maintena 97.5 4.2E-05 1.4E-09 71.2 3.8 54 201-272 179-232 (238)
72 3vk6_A E3 ubiquitin-protein li 97.1 0.00014 4.8E-09 61.0 2.1 47 204-269 3-49 (101)
73 2lri_C Autoimmune regulator; Z 93.4 0.073 2.5E-06 40.7 4.0 52 200-268 10-61 (66)
74 2k16_A Transcription initiatio 90.8 0.12 4.2E-06 39.3 2.5 55 200-268 16-70 (75)
75 1wil_A KIAA1045 protein; ring 89.5 0.38 1.3E-05 39.5 4.5 52 199-265 12-75 (89)
76 1f62_A Transcription factor WS 88.1 0.33 1.1E-05 34.4 2.9 31 236-266 20-50 (51)
77 2l5u_A Chromodomain-helicase-D 85.9 0.53 1.8E-05 35.0 3.0 31 236-266 28-58 (61)
78 1weu_A Inhibitor of growth fam 85.7 0.66 2.3E-05 37.7 3.7 30 237-268 57-87 (91)
79 1we9_A PHD finger family prote 84.0 0.18 6.1E-06 37.3 -0.4 56 200-268 4-60 (64)
80 2ysm_A Myeloid/lymphoid or mix 80.4 0.51 1.7E-05 38.3 1.1 52 200-265 5-56 (111)
81 2yql_A PHD finger protein 21A; 79.0 0.33 1.1E-05 35.4 -0.5 49 200-265 7-55 (56)
82 1mm2_A MI2-beta; PHD, zinc fin 78.4 0.4 1.4E-05 35.7 -0.1 32 236-267 26-57 (61)
83 3u5n_A E3 ubiquitin-protein li 78.2 0.5 1.7E-05 42.3 0.4 32 236-267 24-55 (207)
84 2yt5_A Metal-response element- 77.5 0.33 1.1E-05 36.0 -0.8 57 200-268 4-63 (66)
85 2jun_A Midline-1; B-BOX, TRIM, 77.5 0.95 3.2E-05 35.4 1.8 36 201-250 2-38 (101)
86 3o36_A Transcription intermedi 77.3 0.6 2.1E-05 40.9 0.7 33 236-268 21-53 (184)
87 1wev_A Riken cDNA 1110020M19; 76.9 0.35 1.2E-05 38.5 -0.9 34 236-269 38-75 (88)
88 1xwh_A Autoimmune regulator; P 75.1 0.59 2E-05 35.1 -0.0 52 200-268 6-57 (66)
89 1fp0_A KAP-1 corepressor; PHD 74.2 1.6 5.3E-05 35.5 2.3 33 236-268 42-74 (88)
90 2e6r_A Jumonji/ARID domain-con 74.0 0.35 1.2E-05 38.9 -1.6 55 200-268 14-68 (92)
91 1wew_A DNA-binding family prot 72.4 2.3 7.9E-05 32.8 2.8 34 236-269 37-75 (78)
92 2ko5_A Ring finger protein Z; 72.0 1.2 4.2E-05 37.2 1.2 47 200-269 26-73 (99)
93 1wen_A Inhibitor of growth fam 71.4 2.1 7.2E-05 32.9 2.3 30 237-268 37-67 (71)
94 2ysm_A Myeloid/lymphoid or mix 71.2 0.59 2E-05 37.9 -0.9 32 236-267 74-105 (111)
95 2ku3_A Bromodomain-containing 71.1 2 6.8E-05 33.1 2.1 50 200-266 14-66 (71)
96 3shb_A E3 ubiquitin-protein li 70.8 1.9 6.6E-05 33.8 2.0 31 236-266 46-77 (77)
97 2puy_A PHD finger protein 21A; 70.8 0.51 1.7E-05 34.7 -1.3 51 201-268 4-54 (60)
98 2ro1_A Transcription intermedi 67.8 1.2 4.2E-05 39.6 0.3 33 236-268 19-51 (189)
99 1wem_A Death associated transc 66.2 1.4 4.6E-05 33.7 0.2 53 202-269 16-73 (76)
100 2l43_A N-teminal domain from h 65.2 2.4 8.1E-05 33.8 1.5 51 200-268 23-77 (88)
101 2lv9_A Histone-lysine N-methyl 64.9 1.3 4.6E-05 35.7 -0.0 30 236-266 47-76 (98)
102 2e6s_A E3 ubiquitin-protein li 63.0 1.5 5.2E-05 34.3 -0.0 30 236-265 46-76 (77)
103 3v43_A Histone acetyltransfera 61.3 2.2 7.4E-05 34.9 0.6 30 236-265 82-111 (112)
104 2lbm_A Transcriptional regulat 61.3 4.9 0.00017 35.1 2.9 30 236-265 80-116 (142)
105 3asl_A E3 ubiquitin-protein li 61.3 4.6 0.00016 30.8 2.4 31 236-266 38-69 (70)
106 2kwj_A Zinc finger protein DPF 60.6 0.81 2.8E-05 37.7 -2.1 34 236-269 78-111 (114)
107 3lqh_A Histone-lysine N-methyl 60.3 1.7 6E-05 39.0 -0.1 55 202-268 2-65 (183)
108 2ri7_A Nucleosome-remodeling f 59.3 1.7 5.9E-05 37.4 -0.3 54 201-268 7-61 (174)
109 1wep_A PHF8; structural genomi 58.4 4.2 0.00014 31.3 1.8 53 202-268 12-65 (79)
110 1wee_A PHD finger family prote 53.1 1.6 5.5E-05 33.1 -1.4 54 201-268 15-68 (72)
111 3o70_A PHD finger protein 13; 51.0 2.6 9E-05 32.1 -0.5 51 200-266 17-67 (68)
112 3ask_A E3 ubiquitin-protein li 48.8 3.8 0.00013 38.3 0.1 31 236-266 194-225 (226)
113 1x4i_A Inhibitor of growth pro 46.4 7.3 0.00025 29.8 1.4 28 239-268 30-57 (70)
114 1weo_A Cellulose synthase, cat 46.0 24 0.00081 29.2 4.4 57 200-269 14-70 (93)
115 2kgg_A Histone demethylase jar 45.9 1.4 4.8E-05 31.6 -2.6 48 204-264 4-52 (52)
116 3v43_A Histone acetyltransfera 42.7 16 0.00055 29.7 3.0 52 202-265 5-63 (112)
117 3i2d_A E3 SUMO-protein ligase 41.4 12 0.00039 37.5 2.2 36 231-268 262-299 (371)
118 2xb1_A Pygopus homolog 2, B-ce 39.8 2.8 9.7E-05 34.3 -2.0 54 202-268 3-63 (105)
119 3ql9_A Transcriptional regulat 39.1 13 0.00044 32.0 1.9 31 236-266 74-111 (129)
120 2vnf_A ING 4, P29ING4, inhibit 39.0 3.8 0.00013 30.3 -1.2 27 237-265 31-58 (60)
121 2kwj_A Zinc finger protein DPF 38.8 8 0.00027 31.7 0.6 55 203-265 2-60 (114)
122 4fo9_A E3 SUMO-protein ligase 37.5 14 0.00047 36.8 2.1 48 203-268 216-265 (360)
123 3c6w_A P28ING5, inhibitor of g 35.6 4.8 0.00017 29.8 -1.1 27 237-265 30-57 (59)
124 2cu8_A Cysteine-rich protein 2 35.1 13 0.00044 27.3 1.2 40 201-268 8-47 (76)
125 4gne_A Histone-lysine N-methyl 35.0 12 0.00041 31.1 1.0 31 236-268 34-64 (107)
126 2jmi_A Protein YNG1, ING1 homo 34.7 6.1 0.00021 32.0 -0.8 25 239-265 50-75 (90)
127 2k5c_A Uncharacterized protein 34.6 10 0.00036 31.1 0.6 12 202-213 8-19 (95)
128 2gmg_A Hypothetical protein PF 34.0 17 0.00059 30.5 1.8 26 235-269 71-96 (105)
129 2vpb_A Hpygo1, pygopus homolog 33.4 16 0.00056 27.5 1.5 53 200-265 6-65 (65)
130 3m62_A Ubiquitin conjugation f 33.2 20 0.00068 39.9 2.7 49 200-269 889-938 (968)
131 2g6q_A Inhibitor of growth pro 32.6 5.8 0.0002 29.7 -1.1 28 237-266 32-60 (62)
132 2rsd_A E3 SUMO-protein ligase 29.5 6.2 0.00021 29.6 -1.4 31 236-266 31-65 (68)
133 2co8_A NEDD9 interacting prote 27.4 14 0.00049 27.8 0.3 41 200-268 13-53 (82)
134 3mjh_B Early endosome antigen 26.6 12 0.00043 25.5 -0.2 14 200-213 3-16 (34)
135 1iml_A CRIP, cysteine rich int 24.0 11 0.00037 27.7 -1.0 38 204-269 2-39 (76)
136 2dj7_A Actin-binding LIM prote 23.7 17 0.00058 27.4 0.0 41 200-268 13-53 (80)
137 3o7a_A PHD finger protein 13 v 21.1 12 0.00043 26.5 -1.1 30 235-265 22-51 (52)
138 3u5e_g 60S ribosomal protein L 20.5 84 0.0029 27.0 3.7 46 256-308 40-85 (121)
139 1x64_A Alpha-actinin-2 associa 20.5 42 0.0014 25.4 1.7 41 200-269 23-63 (89)
No 1
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.49 E-value=8.9e-15 Score=118.41 Aligned_cols=76 Identities=25% Similarity=0.390 Sum_probs=50.3
Q ss_pred CCccccccccchhccCCCccccccc-CCCCCCceeecCCCHhhHHHHHhhccCCC-CCCCCCcccccccccCCCCchh
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVR-SGDMPVVGVLSCRHVFHAECLEQTTPKTQ-KSDPSCPICLRLQEENSPDQQV 276 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~-~gD~~vVaVLPCGHVFHaeCLeqWL~k~~-~~d~tCPLCRs~~~~~~~~q~~ 276 (379)
....|+||++.|.....+....... .....++.+++|||+||.+||++|+...+ ....+||+||..+..+.++||-
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~qp~ 101 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPW 101 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSCTT
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCCCCC
Confidence 3468999999997432211110000 00122455789999999999999995321 1236999999999987777764
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=8.7e-14 Score=105.48 Aligned_cols=52 Identities=29% Similarity=0.620 Sum_probs=43.8
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
.+...|+||++.|. +...+.+|+|||+||.+||++|+... .+||+||..+..
T Consensus 21 ~~~~~C~IC~~~~~--------------~~~~~~~l~C~H~fh~~Ci~~w~~~~----~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFE--------------SRQLLRVLPCNHEFHAKCVDKWLKAN----RTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECC--------------BTCEEEEETTTEEEETTHHHHHHHHC----SSCTTTCCCCCC
T ss_pred CCCCCCeECCcccC--------------CCCeEEEECCCCHhHHHHHHHHHHcC----CcCcCcCCcCCC
Confidence 46678999999987 23356789999999999999999865 589999998875
No 3
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=1.5e-13 Score=107.10 Aligned_cols=63 Identities=19% Similarity=0.352 Sum_probs=44.1
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
++..|+||++.|.+.++-+...... +..++.+++|||+||.+||++|+..+ .+||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~--~~~~~~~~~C~H~FH~~Ci~~Wl~~~----~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQ--EDCVVVWGECNHSFHNCCMSLWVKQN----NRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCT--TTCCEEEETTSCEEEHHHHHHHTTTC----CBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCC--CceEEEeCCCCCccChHHHHHHHHhC----CCCCCcCCCcch
Confidence 5667999999887554433222111 22234444599999999999999875 499999998763
No 4
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.36 E-value=1.9e-13 Score=97.37 Aligned_cols=51 Identities=31% Similarity=0.633 Sum_probs=40.9
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeec-CCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLS-CRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLP-CGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
.+...|+||++.|. +...+..++ |||+||.+||++|+... .+||+||..+.
T Consensus 3 ~~~~~C~IC~~~~~--------------~~~~~~~~~~C~H~f~~~Ci~~w~~~~----~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELE--------------DGEEARFLPRCGHGFHAECVDMWLGSH----STCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCC--------------TTSCCEECSSSCCEECTTHHHHTTTTC----CSCSSSCCCSC
T ss_pred CCCCcCccCCcccc--------------CCCceEECCCCCCcccHHHHHHHHHcC----CcCcCCCCEeE
Confidence 35678999999987 223355676 99999999999999764 58999998763
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.36 E-value=2.5e-13 Score=100.99 Aligned_cols=52 Identities=33% Similarity=0.611 Sum_probs=43.2
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
.....|+||++.|. +...+.+|+|||+||..||.+|+... .+||+||..+..
T Consensus 12 ~~~~~C~IC~~~~~--------------~~~~~~~~~C~H~fc~~Ci~~~~~~~----~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 12 DTEEKCTICLSILE--------------EGEDVRRLPCMHLFHQVCVDQWLITN----KKCPICRVDIEA 63 (69)
T ss_dssp TCCCSBTTTTBCCC--------------SSSCEEECTTSCEEEHHHHHHHHHHC----SBCTTTCSBSCS
T ss_pred CCCCCCeeCCcccc--------------CCCcEEEeCCCCHHHHHHHHHHHHcC----CCCcCcCccccC
Confidence 35677999999987 23346789999999999999999875 489999999875
No 6
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=2.2e-13 Score=102.60 Aligned_cols=52 Identities=23% Similarity=0.512 Sum_probs=43.3
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
.....|+||++.|. +...+.+|+|||+||.+||++|+... .+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~--------------~~~~~~~~~C~H~f~~~Ci~~~~~~~----~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 13 NLHELCAVCLEDFK--------------PRDELGICPCKHAFHRKCLIKWLEVR----KVCPLCNMPVLQ 64 (74)
T ss_dssp CCSCBCSSSCCBCC--------------SSSCEEEETTTEEEEHHHHHHHHHHC----SBCTTTCCBCSS
T ss_pred CCCCCCcCCCcccC--------------CCCcEEEcCCCCEecHHHHHHHHHcC----CcCCCcCccccc
Confidence 35678999999987 23346688999999999999999865 489999998874
No 7
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.33 E-value=3e-13 Score=107.00 Aligned_cols=51 Identities=25% Similarity=0.567 Sum_probs=42.8
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
.....|+||++.|. +...+.+|+|||+||..||++|+... .+||+||..+.
T Consensus 38 ~~~~~C~IC~~~~~--------------~~~~~~~l~C~H~Fh~~Ci~~wl~~~----~~CP~Cr~~~~ 88 (91)
T 2l0b_A 38 GQEMCCPICCSEYV--------------KGDVATELPCHHYFHKPCVSIWLQKS----GTCPVCRCMFP 88 (91)
T ss_dssp SSCSEETTTTEECC--------------TTCEEEEETTTEEEEHHHHHHHHTTT----CBCTTTCCBSS
T ss_pred CCCCCCcccChhhc--------------CCCcEEecCCCChHHHHHHHHHHHcC----CcCcCcCccCC
Confidence 36678999999987 23457789999999999999999764 59999998875
No 8
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.32 E-value=4.8e-13 Score=110.86 Aligned_cols=64 Identities=19% Similarity=0.326 Sum_probs=46.3
Q ss_pred CCccccccccchhccCCCccccc-ccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRI-VRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~i-v~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
....|+||++.|...++.+.... ...++...+.+|+|+|+||.+||++||..+ .+||+||..+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~----~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR----QVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC----SBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcC----CcCcCCCCcce
Confidence 56779999999987655332100 011233457789999999999999999874 59999999875
No 9
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.32 E-value=3.7e-13 Score=102.24 Aligned_cols=52 Identities=25% Similarity=0.593 Sum_probs=43.4
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
.....|+||++.|. +...+.+|+|||+||.+||.+|+... .+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~--------------~~~~~~~~~C~H~fc~~Ci~~~~~~~----~~CP~Cr~~~~~ 64 (78)
T 2ect_A 13 GSGLECPVCKEDYA--------------LGESVRQLPCNHLFHDSCIVPWLEQH----DSCPVCRKSLTG 64 (78)
T ss_dssp SSSCCCTTTTSCCC--------------TTSCEEECTTSCEEETTTTHHHHTTT----CSCTTTCCCCCC
T ss_pred CCCCCCeeCCcccc--------------CCCCEEEeCCCCeecHHHHHHHHHcC----CcCcCcCCccCC
Confidence 45678999999987 23346788999999999999999764 589999999874
No 10
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.31 E-value=4.1e-13 Score=95.38 Aligned_cols=51 Identities=25% Similarity=0.586 Sum_probs=41.8
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
+...|+||++.|.+ ....+.+++|||+||.+||++|+... .+||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~-------------~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHT-------------SRVVAHVLPCGHLLHRTCYEEMLKEG----YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCT-------------TTSCEEECTTSCEEETTHHHHHHHHT----CCCTTSCCSSC
T ss_pred CCCcCcccChhhcC-------------CCcCeEecCCCCcccHHHHHHHHHcC----CcCCCCCCcCC
Confidence 56789999999862 22346788999999999999999875 58999998763
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=1.8e-12 Score=95.13 Aligned_cols=56 Identities=25% Similarity=0.555 Sum_probs=43.3
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
.+...|+||++.|.+.. .....+.+++|||+||.+||++|+... .+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~----------~~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIV----------QNGRLIVSTECGHVFCSQCLRDSLKNA----NTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHT----------TTTCCEEECSSSCEEEHHHHHHHHHHC----SSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccc----------cccCCeEeCCCCChhcHHHHHHHHHcC----CCCCCCCCccCc
Confidence 46778999999997310 012235678999999999999999864 589999998753
No 12
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.25 E-value=1.4e-12 Score=96.68 Aligned_cols=56 Identities=27% Similarity=0.596 Sum_probs=44.3
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
.+...|+||++.|.+. +. ....+.+++|||+||.+||++|+... .+||+||..+..
T Consensus 8 ~~~~~C~IC~~~~~~~--------~~--~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEI--------VQ--NGRLIVSTECGHVFCSQCLRDSLKNA----NTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHH--------HT--TTCCEEECTTSCEEEHHHHHHHHHHC----SBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhcc--------cc--ccCCeEeCCCCChHhHHHHHHHHHcC----CCCCCCCCccCh
Confidence 5678899999999731 00 12345688999999999999999865 589999999874
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.22 E-value=2.7e-12 Score=92.94 Aligned_cols=55 Identities=24% Similarity=0.572 Sum_probs=42.9
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
+...|+||++.|.+. .. ....+.+++|||+||.+||++|+... .+||+||..+..
T Consensus 2 ~~~~C~IC~~~~~~~--------~~--~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEI--------VQ--NGRLIVSTECGHVFCSQCLRDSLKNA----NTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHH--------HH--TTCCEEEETTSCEEEHHHHHHHHHHC----SBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCc--------cc--cCCCEEeCCCCCchhHHHHHHHHHcC----CCCCCCCccCCc
Confidence 457899999999731 00 12235688999999999999999864 589999999874
No 14
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=4e-12 Score=95.58 Aligned_cols=49 Identities=22% Similarity=0.470 Sum_probs=41.4
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
.+...|+||++.|. + ..+++|||+||.+||++|+... .+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~--------------~---~~~~~CgH~fC~~Ci~~~~~~~----~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCV--------------H---PVSLPCKHVFCYLCVKGASWLG----KRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCS--------------S---EEEETTTEEEEHHHHHHCTTCS----SBCSSSCCBCCH
T ss_pred CCCCCCccCCcccC--------------C---CEEccCCCHHHHHHHHHHHHCC----CcCcCcCchhCH
Confidence 46778999999886 1 3467999999999999999765 589999999874
No 15
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.20 E-value=1.8e-12 Score=109.85 Aligned_cols=64 Identities=19% Similarity=0.332 Sum_probs=1.0
Q ss_pred CCccccccccchhccCCCcccccc-cCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIV-RSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv-~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
.++.|+||++.|.+.++.+..... ..++...+..++|+|+||.+||++||..+ .+||+||..+.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~----~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR----QVCPLDNREWE 111 (117)
T ss_dssp CC-------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC----CcCCCCCCeee
Confidence 456899999999865543321100 01233345567999999999999999875 59999999875
No 16
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.7e-11 Score=94.01 Aligned_cols=56 Identities=20% Similarity=0.583 Sum_probs=43.4
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
.+...|+||++.|.. ......+|+|||+||.+||++|+.... ....||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~-------------~~~~~~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 13 REVLECPICMESFTE-------------EQLRPKLLHCGHTICRQCLEKLLASSI-NGVRCPFCSKITRI 68 (88)
T ss_dssp CSCCBCTTTCCBCCT-------------TSSCEEECSSSCEEEHHHHHHHHHHCS-SCBCCTTTCCCBCC
T ss_pred cCCCCCccCCccccc-------------cCCCeEECCCCChhhHHHHHHHHHcCC-CCcCCCCCCCcccc
Confidence 466789999999872 112255789999999999999998641 23689999998864
No 17
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.17 E-value=1.2e-11 Score=91.30 Aligned_cols=54 Identities=19% Similarity=0.352 Sum_probs=41.9
Q ss_pred CCCcccccccc-chhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 200 SDTFKCGLCER-FLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 200 ~~~~~CaICle-~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
|+...|+||++ .|.+ ....+.+++|||+||.+||++|+.+.. ..||+||..+..
T Consensus 1 m~~~~C~IC~~~~~~~-------------~~~~~~~~~CgH~fC~~Ci~~~~~~~~---~~CP~Cr~~~~~ 55 (65)
T 1g25_A 1 MDDQGCPRCKTTKYRN-------------PSLKLMVNVCGHTLCESCVDLLFVRGA---GNCPECGTPLRK 55 (65)
T ss_dssp CCTTCCSTTTTHHHHC-------------SSCCEEECTTCCCEEHHHHHHHHHTTS---SSCTTTCCCCSS
T ss_pred CCCCcCCcCCCCccCC-------------CccCeecCCCCCHhHHHHHHHHHHcCC---CcCCCCCCcccc
Confidence 46778999999 7762 111234679999999999999986543 589999999874
No 18
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.2e-11 Score=92.20 Aligned_cols=48 Identities=27% Similarity=0.652 Sum_probs=40.9
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
.+...|+||++.+. + .+++|||+||.+||.+|+... .+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~--------------~----~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 13 TDEEECCICMDGRA--------------D----LILPCAHSFCQKCIDKWSDRH----RNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCSSSCCSCC--------------S----EEETTTEEECHHHHHHSSCCC----SSCHHHHHCTTC
T ss_pred CCCCCCeeCCcCcc--------------C----cccCCCCcccHHHHHHHHHCc----CcCCCcCCcccC
Confidence 45678999999876 2 578999999999999999853 699999998874
No 19
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=1.2e-11 Score=97.82 Aligned_cols=53 Identities=21% Similarity=0.429 Sum_probs=42.2
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCC-----CHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCR-----HVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCG-----HVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
.+...|.||++++.+ +. .+ ++||. |.||.+||++|+...+ ..+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~-------------~~-~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~--~~~CplCr~~~~~ 70 (80)
T 2d8s_A 13 SSQDICRICHCEGDD-------------ES-PL-ITPCHCTGSLHFVHQACLQQWIKSSD--TRCCELCKYEFIM 70 (80)
T ss_dssp TTSCCCSSSCCCCCS-------------SS-CE-ECSSSCCSSSCCEETTHHHHHHHHHC--CSBCSSSCCBCCC
T ss_pred CCCCCCeEcCccccC-------------CC-ee-EeccccCCcCCeeCHHHHHHHHhhCC--CCCCCCCCCeeec
Confidence 466789999998862 22 23 68996 9999999999998753 2589999999974
No 20
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.12 E-value=9.7e-12 Score=91.91 Aligned_cols=49 Identities=27% Similarity=0.564 Sum_probs=40.7
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
....|+||++.+. + .+.+++|||+||.+||.+|+... .+||+||..+..
T Consensus 4 ~~~~C~IC~~~~~--------------~--~~~~~~C~H~fc~~Ci~~~~~~~----~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPS--------------N--YSMALPCLHAFCYVCITRWIRQN----PTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCC--------------S--CEEETTTTEEESTTHHHHHHHHS----CSTTTTCCCCCC
T ss_pred CCCCCeeCCcccc--------------C--CcEecCCCCeeHHHHHHHHHhCc----CcCcCCChhhHh
Confidence 4567999999976 1 24678999999999999999765 589999998863
No 21
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=2.3e-11 Score=91.67 Aligned_cols=50 Identities=22% Similarity=0.601 Sum_probs=40.9
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
.+...|+||++.|. + .+.+++|||+||..||++|+... ..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~--------------~--p~~~~~CgH~fC~~Ci~~~~~~~----~~CP~Cr~~~~~ 62 (72)
T 2djb_A 13 TPYILCSICKGYLI--------------D--ATTITECLHTFCKSCIVRHFYYS----NRCPKCNIVVHQ 62 (72)
T ss_dssp CGGGSCTTTSSCCS--------------S--CEECSSSCCEECHHHHHHHHHHC----SSCTTTCCCCCS
T ss_pred CCCCCCCCCChHHH--------------C--cCEECCCCCHHHHHHHHHHHHcC----CcCCCcCcccCc
Confidence 35678999999987 2 24345999999999999999764 589999999875
No 22
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=7.5e-11 Score=88.01 Aligned_cols=52 Identities=21% Similarity=0.520 Sum_probs=41.3
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
.+...|+||++.|. + ..+|+|||+||.+||.+|+.... ....||+||..+..
T Consensus 18 ~~~~~C~IC~~~~~--------------~---~~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 18 QEEVICPICLDILQ--------------K---PVTIDCGHNFCLKCITQIGETSC-GFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCBCTTTCSBCS--------------S---EEECTTCCEEEHHHHHHHCSSSC-SCCCCSSSCCCCCC
T ss_pred ccCCEeccCCcccC--------------C---eEEcCCCChhhHHHHHHHHHcCC-CCCCCCCCCCcCCc
Confidence 46678999999887 1 34679999999999999997321 23689999998864
No 23
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=2.9e-11 Score=92.73 Aligned_cols=60 Identities=27% Similarity=0.605 Sum_probs=45.1
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccccC-CCCchhhhh
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN-SPDQQVFSR 279 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~~-~~~q~~~~~ 279 (379)
....|+||++.|. + ..+++|||+||..||.+|+... ..||+||..+... .++..++.+
T Consensus 14 ~~~~C~IC~~~~~--------------~---p~~~~CgH~fC~~Ci~~~~~~~----~~CP~Cr~~~~~~~~~~~~l~~~ 72 (81)
T 2csy_A 14 IPFRCFICRQAFQ--------------N---PVVTKCRHYFCESCALEHFRAT----PRCYICDQPTGGIFNPAKELMAK 72 (81)
T ss_dssp CCSBCSSSCSBCC--------------S---EEECTTSCEEEHHHHHHHHHHC----SBCSSSCCBCCSCCEECHHHHHH
T ss_pred CCCCCcCCCchhc--------------C---eeEccCCCHhHHHHHHHHHHCC----CcCCCcCccccccCCcHHHHHHH
Confidence 5668999999987 1 2368999999999999999764 5899999998621 234445544
Q ss_pred hh
Q 016977 280 LK 281 (379)
Q Consensus 280 ~r 281 (379)
++
T Consensus 73 ~~ 74 (81)
T 2csy_A 73 LQ 74 (81)
T ss_dssp HS
T ss_pred HH
Confidence 44
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=4.4e-11 Score=88.50 Aligned_cols=50 Identities=26% Similarity=0.650 Sum_probs=40.4
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
.+...|+||++.+.+ + + +++|||+||.+||++|+...+ ..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~---------------p-~-~~~CgH~fC~~Ci~~~~~~~~---~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCS---------------P-K-QTECGHRFCESCMAALLSSSS---PKCTACQESIVK 62 (66)
T ss_dssp CCCEECTTTCCEESS---------------C-C-CCSSSCCCCHHHHHHHHTTSS---CCCTTTCCCCCT
T ss_pred CcCCCCCCCChHhcC---------------e-e-ECCCCCHHHHHHHHHHHHhCc---CCCCCCCcCCCh
Confidence 466789999999871 2 2 379999999999999996432 689999999874
No 25
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.04 E-value=4.7e-11 Score=100.72 Aligned_cols=48 Identities=23% Similarity=0.688 Sum_probs=40.0
Q ss_pred CccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccccC
Q 016977 202 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 270 (379)
Q Consensus 202 ~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~~ 270 (379)
...|+||++.|. + ..+++|||+||..||.+|+... .+||+||..+...
T Consensus 53 ~~~C~iC~~~~~--------------~---~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 53 ELQCIICSEYFI--------------E---AVTLNCAHSFCSYCINEWMKRK----IECPICRKDIKSK 100 (138)
T ss_dssp HSBCTTTCSBCS--------------S---EEEETTSCEEEHHHHHHHTTTC----SBCTTTCCBCCCE
T ss_pred cCCCcccCcccC--------------C---ceECCCCCCccHHHHHHHHHcC----CcCCCCCCcCCCC
Confidence 456999999987 1 3468999999999999999764 5899999998643
No 26
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.04 E-value=6.3e-11 Score=95.99 Aligned_cols=56 Identities=27% Similarity=0.596 Sum_probs=43.7
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
.+...|+||++.|.+. +. +...+.+++|||+||.+||++|+... .+||+||..+..
T Consensus 5 ~~~~~C~IC~~~~~~~--------~~--~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEI--------VQ--NGRLIVSTECGHVFCSQCLRDSLKNA----NTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHH--------HH--TTCCEEEETTCCEEEHHHHHHHHTTC----SBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCc--------cc--cccCeEecCCCChhhHHHHHHHHHhC----CCCCCCCCcCcc
Confidence 3567899999999721 11 12335688999999999999999865 489999999874
No 27
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.01 E-value=1.4e-10 Score=95.56 Aligned_cols=49 Identities=24% Similarity=0.538 Sum_probs=40.4
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
+...|+||++.|.+ ...++|||+||..||..|+.... ..||+||..+..
T Consensus 51 ~~~~C~IC~~~~~~-----------------p~~~~CgH~fC~~Ci~~~~~~~~---~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFR-----------------PITTVCQHNVCKDCLDRSFRAQV---FSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSS-----------------EEECTTSCEEEHHHHHHHHHTTC---CBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcC-----------------cEEeeCCCcccHHHHHHHHhHCc---CCCCCCCccCCC
Confidence 45679999999871 23579999999999999998432 589999999975
No 28
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=2.6e-10 Score=83.46 Aligned_cols=46 Identities=24% Similarity=0.618 Sum_probs=36.2
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPIC 263 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLC 263 (379)
.+...|+||++.|. + ..+|+|||+||.+||++|+.... ....||+|
T Consensus 18 ~~~~~C~IC~~~~~--------------~---p~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQ--------------K---PVTIDCGHNFCLKCITQIGETSC-GFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCS--------------S---CEECTTSSEECHHHHHHHHHHCS-SCCCCSCC
T ss_pred ccCCCCCcCCchhC--------------C---eEEeCCCCcchHHHHHHHHHcCC-CCCcCcCC
Confidence 46678999999987 1 23579999999999999997421 23689998
No 29
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.00 E-value=1e-10 Score=88.31 Aligned_cols=53 Identities=23% Similarity=0.589 Sum_probs=41.7
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCC---CCCCCCccccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQ---KSDPSCPICLRLQEE 269 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~---~~d~tCPLCRs~~~~ 269 (379)
.+...|+||++.|. + + .+|+|||+||.+||.+|+.... .....||+||..+..
T Consensus 10 ~~~~~C~IC~~~~~--------------~-p--~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLT--------------E-P--LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECS--------------S-C--CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccC--------------C-e--eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 46778999999987 1 1 2479999999999999998631 123689999999874
No 30
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.00 E-value=1.3e-10 Score=88.22 Aligned_cols=50 Identities=12% Similarity=0.331 Sum_probs=41.1
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
.+...|+||++.|. + ..+++|||+|+..||++|+.... .+||+|+..+..
T Consensus 6 ~~~~~C~IC~~~~~--------------~---Pv~~~CgH~fc~~Ci~~~~~~~~---~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMK--------------D---PVIVSTGQTYERSSIQKWLDAGH---KTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCS--------------S---EEEETTTEEEEHHHHHHHHTTTC---CBCTTTCCBCSS
T ss_pred cccCCCCCcccccc--------------C---CEEcCCCCeecHHHHHHHHHHCc---CCCCCCcCCCCh
Confidence 46778999999987 1 23579999999999999997633 689999998864
No 31
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=1.9e-10 Score=82.15 Aligned_cols=46 Identities=24% Similarity=0.676 Sum_probs=35.8
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPIC 263 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLC 263 (379)
.+...|+||++.|.+ ..+|+|||+||.+||++|+...+ ....||+|
T Consensus 13 ~~~~~C~IC~~~~~~-----------------p~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKE-----------------PVIIECGHNFCKACITRWWEDLE-RDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSS-----------------CCCCSSCCCCCHHHHHHHTTSSC-CSCCCSCC
T ss_pred ccCCCCccCCcccCc-----------------cEeCCCCCccCHHHHHHHHHhcC-CCCCCCCC
Confidence 466789999999871 13579999999999999976411 23689998
No 32
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.98 E-value=7.4e-11 Score=94.74 Aligned_cols=50 Identities=20% Similarity=0.485 Sum_probs=41.2
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
+...|+||++.|. + .+..++|||+||..||.+|+...+ ..||+||..+..
T Consensus 21 ~~~~C~IC~~~~~--------------~--p~~~~~CgH~FC~~Ci~~~~~~~~---~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 21 EVFRCFICMEKLR--------------D--ARLCPHCSKLCCFSCIRRWLTEQR---AQCPHCRAPLQL 70 (100)
T ss_dssp HHTBCTTTCSBCS--------------S--EEECTTTCCEEEHHHHHHHHHHTC---SBCTTTCCBCCG
T ss_pred CCCCCccCCcccc--------------C--ccccCCCCChhhHHHHHHHHHHCc---CCCCCCCCcCCH
Confidence 5677999999987 1 243489999999999999998753 589999999863
No 33
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.97 E-value=1.8e-10 Score=87.51 Aligned_cols=50 Identities=22% Similarity=0.683 Sum_probs=39.9
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeec-CCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLS-CRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLP-CGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
.+...|+||++.|. + ..+++ |||+||..||++|+.... ...||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~--------------~---p~~~~~CgH~fC~~Ci~~~~~~~~--~~~CP~Cr~~~~ 63 (74)
T 2yur_A 13 PDELLCLICKDIMT--------------D---AVVIPCCGNSYCDECIRTALLESD--EHTCPTCHQNDV 63 (74)
T ss_dssp CGGGSCSSSCCCCT--------------T---CEECSSSCCEECTTHHHHHHHHSS--SSCCSSSCCSSC
T ss_pred CCCCCCcCCChHHh--------------C---CeEcCCCCCHHHHHHHHHHHHhcC--CCcCCCCCCcCC
Confidence 46678999999987 1 23578 999999999999997542 258999999754
No 34
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.95 E-value=2.2e-10 Score=86.63 Aligned_cols=53 Identities=19% Similarity=0.518 Sum_probs=41.4
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCC--CCCCCCccccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQ--KSDPSCPICLRLQEE 269 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~--~~d~tCPLCRs~~~~ 269 (379)
.+...|+||++.|.+ ..+++|||+||..||.+|+.... .....||+||..+..
T Consensus 17 ~~~~~C~IC~~~~~~-----------------p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 17 KEEVTCPICLELLKE-----------------PVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CTTTSCTTTCSCCSS-----------------CEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred ccCCCCcCCChhhCc-----------------ceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 356789999999871 22689999999999999998631 113689999999874
No 35
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.94 E-value=6.5e-10 Score=87.60 Aligned_cols=59 Identities=22% Similarity=0.518 Sum_probs=44.5
Q ss_pred CCCCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccccCCCCc
Q 016977 198 VPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEENSPDQ 274 (379)
Q Consensus 198 ~p~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~~~~~q 274 (379)
-+.....|+||.+.|.+ . +.-..|+|.||.+||.+||.... ..+||+|+..+....++.
T Consensus 11 y~~~i~~C~IC~~~i~~--------------g--~~C~~C~h~fH~~Ci~kWl~~~~--~~~CP~Cr~~w~~~~~~~ 69 (74)
T 2ct0_A 11 YPDAVKICNICHSLLIQ--------------G--QSCETCGIRMHLPCVAKYFQSNA--EPRCPHCNDYWPHEIPKS 69 (74)
T ss_dssp CSSSSCBCSSSCCBCSS--------------S--EECSSSCCEECHHHHHHHSTTCS--SCCCTTTCSCCCSCCCCC
T ss_pred ccCCCCcCcchhhHccc--------------C--CccCCCCchhhHHHHHHHHHhcC--CCCCCCCcCcCCCCCCCC
Confidence 33567889999999872 1 11228999999999999997653 268999999998654443
No 36
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.93 E-value=3.3e-10 Score=91.74 Aligned_cols=56 Identities=27% Similarity=0.596 Sum_probs=43.6
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
.+...|+||++.|.+. +. ....+..++|||+||..||++|+... .+||+||..+..
T Consensus 70 ~~~~~C~iC~~~~~~~--------~~--~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEI--------VQ--NGRLIVSTECGHVFCSQCLRDSLKNA----NTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHH--------HH--TTCCEEEETTSBEEEHHHHHHHHHHC----SBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccc--------cc--cCcceEeCCCCChhhHHHHHHHHHcC----CCCCCCCCcCCh
Confidence 4667899999998721 11 12234688999999999999999865 499999999875
No 37
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.92 E-value=2.6e-10 Score=90.43 Aligned_cols=49 Identities=22% Similarity=0.648 Sum_probs=39.8
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
+...|+||++.|. + .+.+++|||+||..||.+|+... .+||+||..+..
T Consensus 21 ~~~~C~IC~~~~~--------------~--p~~~~~CgH~fC~~Ci~~~~~~~----~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFN--------------I--AMIIPQCSHNYCSLCIRKFLSYK----TQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCS--------------S--EEECTTTCCEEEHHHHHHHHTTC----CBCTTTCCBCCG
T ss_pred CCCCcccCChhhC--------------C--cCEECCCCCHhhHHHHHHHHHCC----CCCCCCCCcCCh
Confidence 4567999999987 1 23334899999999999999864 589999999874
No 38
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=2e-10 Score=86.81 Aligned_cols=53 Identities=28% Similarity=0.674 Sum_probs=41.0
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCC--CCCCCCCccccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKT--QKSDPSCPICLRLQEE 269 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~--~~~d~tCPLCRs~~~~ 269 (379)
.+...|+||++.|. + ..+|+|||+||.+||++|+... ......||+||..+..
T Consensus 17 ~~~~~C~IC~~~~~--------------~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 17 KEEVTCPICLELLT--------------Q---PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCTTTCSCCS--------------S---CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred cCCCCCCCCCcccC--------------C---ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 35678999999987 1 2257999999999999999761 0113689999999874
No 39
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.92 E-value=2.7e-10 Score=98.12 Aligned_cols=50 Identities=22% Similarity=0.581 Sum_probs=40.7
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
+...|+||++.|. + .+.+++|||+||..||++|+.... ..||+||..+..
T Consensus 53 ~~~~C~IC~~~~~--------------~--p~~~~~CgH~fC~~Ci~~~~~~~~---~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLK--------------N--TMTTKECLHRFCADCIITALRSGN---KECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCS--------------S--EEEETTTCCEEEHHHHHHHHHTTC---CBCTTTCCBCCS
T ss_pred CCCCCcccChHhh--------------C--cCEeCCCCChhHHHHHHHHHHhCc---CCCCCCCCcCCC
Confidence 5568999999987 2 244459999999999999998643 689999999853
No 40
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.92 E-value=3e-10 Score=91.56 Aligned_cols=49 Identities=24% Similarity=0.630 Sum_probs=40.6
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
+...|+||++.|. + .+.+++|||+||..||.+|+... ..||+|+..+..
T Consensus 14 ~~~~C~IC~~~~~--------------~--p~~~~~CgH~fC~~Ci~~~~~~~----~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFI--------------D--ATTIIECLHSFCKTCIVRYLETS----KYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCS--------------S--EEEETTTCCEEEHHHHHHHHTSC----SBCTTTCCBSCS
T ss_pred CcCCCccCChHHh--------------C--cCEeCCCCChhhHHHHHHHHHhC----CcCcCCCccccc
Confidence 5678999999987 1 24334999999999999999864 589999999875
No 41
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.90 E-value=2.3e-10 Score=93.03 Aligned_cols=49 Identities=29% Similarity=0.695 Sum_probs=40.6
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
.+...|+||++.|.+ ..+|+|||+||..||.+|+.... ..||+||..+.
T Consensus 13 ~~~~~C~iC~~~~~~-----------------p~~~~CgH~fC~~Ci~~~~~~~~---~~CP~Cr~~~~ 61 (115)
T 3l11_A 13 LSECQCGICMEILVE-----------------PVTLPCNHTLCKPCFQSTVEKAS---LCCPFCRRRVS 61 (115)
T ss_dssp HHHHBCTTTCSBCSS-----------------CEECTTSCEECHHHHCCCCCTTT---SBCTTTCCBCH
T ss_pred CCCCCCccCCcccCc-----------------eeEcCCCCHHhHHHHHHHHhHCc---CCCCCCCcccC
Confidence 356789999999871 23579999999999999997643 68999999986
No 42
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.89 E-value=7.6e-10 Score=95.66 Aligned_cols=50 Identities=26% Similarity=0.541 Sum_probs=41.1
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccccC
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 270 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~~ 270 (379)
+...|+||++.|.+ ..+++|||+||..||.+|+.... ..||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~-----------------pv~~~CgH~fC~~Ci~~~~~~~~---~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQ-----------------PVTTECFHNVCKDCLQRSFKAQV---FSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSS-----------------EEECTTSCEEEHHHHHHHHHTTC---CBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcC-----------------CEEcCCCCchhHHHHHHHHHhCC---CcCCCCCccCCCC
Confidence 45679999999871 23589999999999999998642 5899999999854
No 43
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.88 E-value=5.8e-10 Score=86.95 Aligned_cols=50 Identities=22% Similarity=0.683 Sum_probs=40.4
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeec-CCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLS-CRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLP-CGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
.+...|+||++.|. + ..+++ |||+|+..||++|+.... ...||+||..+.
T Consensus 11 ~~~~~C~IC~~~~~--------------~---p~~~~~CgH~fC~~Ci~~~~~~~~--~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMT--------------D---AVVIPCCGNSYCDECIRTALLESD--EHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECS--------------S---CEECTTTCCEECHHHHHHHHHHCT--TCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhc--------------C---ceECCCCCCHHHHHHHHHHHHhcC--CCcCcCCCCcCC
Confidence 46778999999987 1 23678 999999999999997532 268999999873
No 44
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.83 E-value=9.1e-10 Score=88.04 Aligned_cols=51 Identities=18% Similarity=0.567 Sum_probs=40.0
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
+...|+||++.+. + ..+++|||+||..||.+|+.... ...+||+||..+..
T Consensus 20 ~~~~C~IC~~~~~--------------~---p~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 20 KILECPICLELIK--------------E---PVSTKCDHIFCKFCMLKLLNQKK-GPSQCPLCKNDITK 70 (112)
T ss_dssp HHTSCSSSCCCCS--------------S---CCBCTTSCCCCSHHHHHHHHSSS-SSCCCTTTSCCCCT
T ss_pred CCCCCcccChhhc--------------C---eEECCCCCHHHHHHHHHHHHhCC-CCCCCcCCCCcCCH
Confidence 3457999999886 1 12479999999999999998642 12589999998864
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.75 E-value=2.4e-09 Score=87.07 Aligned_cols=50 Identities=26% Similarity=0.555 Sum_probs=40.8
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccccC
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 270 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~~ 270 (379)
+...|+||++.|. + ...++|||+||..||++|+.... .+||+||..+...
T Consensus 22 ~~~~C~IC~~~~~--------------~---p~~~~CgH~fC~~Ci~~~~~~~~---~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 22 KSISCQICEHILA--------------D---PVETSCKHLFCRICILRCLKVMG---SYCPSCRYPCFPT 71 (116)
T ss_dssp HHTBCTTTCSBCS--------------S---EEECTTSCEEEHHHHHHHHHHTC---SBCTTTCCBCCGG
T ss_pred CCCCCCCCCcHhc--------------C---cEEcCCCCcccHHHHHHHHhHCc---CcCCCCCCCCCHh
Confidence 4567999999987 1 23479999999999999998643 5899999998743
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.75 E-value=1.8e-09 Score=88.62 Aligned_cols=50 Identities=20% Similarity=0.499 Sum_probs=41.4
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
.+...|+||++.|.+ ..+++|||+|+..||.+|+.... .+||+||..+..
T Consensus 16 ~~~~~C~IC~~~~~~-----------------p~~~~CgH~fC~~Ci~~~~~~~~---~~CP~Cr~~~~~ 65 (118)
T 3hct_A 16 ESKYECPICLMALRE-----------------AVQTPCGHRFCKACIIKSIRDAG---HKCPVDNEILLE 65 (118)
T ss_dssp CGGGBCTTTCSBCSS-----------------EEECTTSCEEEHHHHHHHHHHHC---SBCTTTCCBCCG
T ss_pred CCCCCCCcCChhhcC-----------------eEECCcCChhhHHHHHHHHhhCC---CCCCCCCCCcCH
Confidence 466789999999871 23579999999999999998653 489999999875
No 47
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.74 E-value=6.2e-09 Score=81.67 Aligned_cols=54 Identities=22% Similarity=0.418 Sum_probs=40.1
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
.+...|+||++++.. .+. .+..++|||.|+..||.+++...+ ..||+||+.+..
T Consensus 9 ~~~~~CpICle~~~~------------~d~-~~~p~~CGH~fC~~Cl~~~~~~~~---~~CP~CR~~~~~ 62 (78)
T 1e4u_A 9 EDPVECPLCMEPLEI------------DDI-NFFPCTCGYQICRFCWHRIRTDEN---GLCPACRKPYPE 62 (78)
T ss_dssp CCCCBCTTTCCBCCT------------TTT-TCCSSTTSCCCCHHHHHHHTTSSC---SBCTTTCCBCSS
T ss_pred ccCCcCCccCccCcc------------ccc-cccccCCCCCcCHHHHHHHHhcCC---CCCCCCCCccCC
Confidence 467789999998861 011 122235999999999999875432 689999999975
No 48
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.58 E-value=1.5e-08 Score=101.02 Aligned_cols=49 Identities=22% Similarity=0.491 Sum_probs=39.9
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
....|+||++.+. + ..+++|||+||..||.+|+.... ..||+||..+..
T Consensus 331 ~~~~C~ICle~~~--------------~---pv~lpCGH~FC~~Ci~~wl~~~~---~~CP~CR~~i~~ 379 (389)
T 2y1n_A 331 TFQLCKICAENDK--------------D---VKIEPCGHLMCTSCLTSWQESEG---QGCPFCRCEIKG 379 (389)
T ss_dssp SSSBCTTTSSSBC--------------C---EEEETTCCEECHHHHHHHHHHTC---SBCTTTCCBCCE
T ss_pred CCCCCCccCcCCC--------------C---eEEeCCCChhhHHHHHHHHhcCC---CCCCCCCCccCC
Confidence 3468999998876 1 45789999999999999998322 589999998864
No 49
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.56 E-value=7.6e-09 Score=84.79 Aligned_cols=46 Identities=26% Similarity=0.744 Sum_probs=37.9
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceee-cCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVL-SCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVL-PCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
+...|+||++.|.+ ++ ++ +|||+|+..||.+|+. ..||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~----------------pv-~~~~CgH~fC~~Ci~~~~~------~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 21 KLLRCSRCTNILRE----------------PV-CLGGCEHIFCSNCVSDCIG------TGCPVCYTPAWI 67 (117)
T ss_dssp HTTSCSSSCSCCSS----------------CB-CCCSSSCCBCTTTGGGGTT------TBCSSSCCBCSC
T ss_pred hCCCCCCCChHhhC----------------cc-EeCCCCCHHHHHHHHHHhc------CCCcCCCCcCcc
Confidence 45679999999871 13 45 9999999999999987 379999999853
No 50
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.54 E-value=7.2e-09 Score=75.42 Aligned_cols=45 Identities=27% Similarity=0.575 Sum_probs=36.7
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
+...|+||++.|. + ..+|+|||+|+..||.+|. ..||+||..+..
T Consensus 5 ~~~~C~IC~~~~~--------------~---p~~l~CgH~fC~~Ci~~~~-------~~CP~Cr~~~~~ 49 (56)
T 1bor_A 5 QFLRCQQCQAEAK--------------C---PKLLPCLHTLCSGCLEASG-------MQCPICQAPWPL 49 (56)
T ss_dssp CCSSCSSSCSSCB--------------C---CSCSTTSCCSBTTTCSSSS-------SSCSSCCSSSSC
T ss_pred cCCCceEeCCccC--------------C---eEEcCCCCcccHHHHccCC-------CCCCcCCcEeec
Confidence 5667999999987 1 2368999999999999851 479999998864
No 51
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.54 E-value=1.1e-08 Score=87.65 Aligned_cols=49 Identities=20% Similarity=0.537 Sum_probs=39.9
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
.+...|+||++.|.+ + ..++|||+|+..||.+|+.... ..||+||..+.
T Consensus 29 ~~~~~C~IC~~~~~~---------------p--v~~~CgH~FC~~Ci~~~~~~~~---~~CP~Cr~~~~ 77 (141)
T 3knv_A 29 EAKYLCSACRNVLRR---------------P--FQAQCGHRYCSFCLASILSSGP---QNCAACVHEGI 77 (141)
T ss_dssp CGGGBCTTTCSBCSS---------------E--EECTTSCEEEHHHHHHHGGGSC---EECHHHHHTTC
T ss_pred CcCcCCCCCChhhcC---------------c--EECCCCCccCHHHHHHHHhcCC---CCCCCCCCccc
Confidence 467789999999871 1 3479999999999999997543 58999999753
No 52
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.49 E-value=2.7e-08 Score=76.06 Aligned_cols=44 Identities=20% Similarity=0.545 Sum_probs=36.7
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCCCH-hhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHV-FHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHV-FHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
+...|+||++.+. ....|||||+ |+..|+.+| ..||+||..+..
T Consensus 23 ~~~~C~iC~~~~~-----------------~~~~~pCgH~~~C~~C~~~~--------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNI-----------------AIVFVPCGHLVTCKQCAEAV--------DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBC-----------------CEEEETTCCBCCCHHHHTTC--------SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCC-----------------CEEEcCCCChhHHHHhhhcC--------ccCCCcCcCccC
Confidence 4567999998876 1457899999 999999999 279999998864
No 53
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.46 E-value=5e-08 Score=76.82 Aligned_cols=48 Identities=17% Similarity=0.272 Sum_probs=40.4
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
+...|+||++.|.+ -.+++|||+|-..||++|+... .+||+|+..+..
T Consensus 13 ~~~~CpI~~~~m~d-----------------PV~~~cGhtf~r~~I~~~l~~~----~~cP~~~~~l~~ 60 (85)
T 2kr4_A 13 DEFRDPLMDTLMTD-----------------PVRLPSGTVMDRSIILRHLLNS----PTDPFNRQMLTE 60 (85)
T ss_dssp TTTBCTTTCSBCSS-----------------EEECTTSCEEEHHHHHHHHHHC----SBCTTTCCBCCG
T ss_pred hheECcccCchhcC-----------------CeECCCCCEECHHHHHHHHhcC----CCCCCCcCCCCh
Confidence 67889999999871 2367999999999999999853 699999998763
No 54
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.45 E-value=6.8e-08 Score=78.69 Aligned_cols=49 Identities=14% Similarity=0.239 Sum_probs=40.9
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
-+...|+||++.|.+ -.+++|||+|-..||++|+... .+||+|+..+..
T Consensus 27 p~~~~CpI~~~~m~d-----------------PV~~~cGhtf~r~~I~~~l~~~----~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTD-----------------PVRLPSGTIMDRSIILRHLLNS----PTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSS-----------------EEEETTTEEEEHHHHHHHTTSC----SBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccC-----------------CeECCCCCEEchHHHHHHHHcC----CCCCCCCCCCCh
Confidence 367889999999871 2367999999999999999753 699999998864
No 55
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.43 E-value=8.7e-08 Score=77.80 Aligned_cols=48 Identities=10% Similarity=0.069 Sum_probs=40.6
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCC-CHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCR-HVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCG-HVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
+...|+||++.|.+ -.+++|| |+|-..||++|+... .+||+|+..+..
T Consensus 21 ~~~~CpI~~~~m~d-----------------PV~~~cG~htf~r~cI~~~l~~~----~~cP~~~~~l~~ 69 (98)
T 1wgm_A 21 DEFLDPIMSTLMCD-----------------PVVLPSSRVTVDRSTIARHLLSD----QTDPFNRSPLTM 69 (98)
T ss_dssp TTTBCTTTCSBCSS-----------------EEECTTTCCEEEHHHHHHHTTTS----CBCTTTCSBCCT
T ss_pred HhcCCcCccccccC-----------------CeECCCCCeEECHHHHHHHHHhC----CCCCCCCCCCCh
Confidence 67789999999871 2367999 999999999999863 699999998864
No 56
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.41 E-value=5.7e-08 Score=87.37 Aligned_cols=50 Identities=6% Similarity=0.076 Sum_probs=41.1
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
.+...|+||++.|.+ ..+++|||+|...||++|+.... .+||+|+..+..
T Consensus 206 ~~~~~c~i~~~~~~d-----------------Pv~~~~gh~f~~~~i~~~~~~~~---~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMRE-----------------PCITPSGITYDRKDIEEHLQRVG---HFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCSS-----------------EEECSSCCEEETTHHHHHHHHTC---SSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhcC-----------------CeECCCCCEECHHHHHHHHHHCC---CCCcCCCCCCch
Confidence 467889999999871 23679999999999999998643 469999998863
No 57
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.35 E-value=9.9e-08 Score=82.25 Aligned_cols=50 Identities=20% Similarity=0.507 Sum_probs=41.3
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
.+...|+||++.|. + + ..++|||+|...||.+|+.... .+||+||..+..
T Consensus 16 ~~~~~C~IC~~~~~--------------~-p--v~~~CgH~fC~~Ci~~~~~~~~---~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 16 ESKYECPICLMALR--------------E-A--VQTPCGHRFCKACIIKSIRDAG---HKCPVDNEILLE 65 (170)
T ss_dssp CGGGBCTTTCSBCS--------------S-E--EECTTSCEEEHHHHHHHHHHHC---SBCTTTCCBCCG
T ss_pred CCCCCCCCCChhhc--------------C-c--EECCCCCHHHHHHHHHHHHhCC---CCCCCCccCcch
Confidence 46778999999987 1 1 2479999999999999997643 489999999875
No 58
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.34 E-value=1.3e-07 Score=70.94 Aligned_cols=49 Identities=14% Similarity=0.397 Sum_probs=38.9
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceee--cCCCH-hhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVL--SCRHV-FHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVL--PCGHV-FHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
.+...|.||++... + +.++ ||||+ |-.+|+++|.... ..||+||..+..
T Consensus 6 ~~~~~C~IC~~~~~--------------~---~~~~~~pCgH~~~C~~C~~~~~~~~----~~CPiCR~~i~~ 57 (64)
T 2vje_A 6 NAIEPCVICQGRPK--------------N---GCIVHGKTGHLMACFTCAKKLKKRN----KPCPVCRQPIQM 57 (64)
T ss_dssp GGGSCCTTTSSSCS--------------C---EEEEETTEEEEEECHHHHHHHHHTT----CCCTTTCCCCCE
T ss_pred CCcCCCCcCCCCCC--------------C---EEEECCCCCChhhHHHHHHHHHHcC----CcCCCcCcchhc
Confidence 46678999998865 1 3344 99999 6799999998754 589999998864
No 59
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.32 E-value=1.8e-07 Score=74.59 Aligned_cols=50 Identities=22% Similarity=0.505 Sum_probs=38.6
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeec-CCCHhhHHHHHhhccCCC--CCCCCCcc--cccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLS-CRHVFHAECLEQTTPKTQ--KSDPSCPI--CLRL 266 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLP-CGHVFHaeCLeqWL~k~~--~~d~tCPL--CRs~ 266 (379)
.....|+||++.|. | +| +++ |||+|-..||++|+.... ....+||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~--------------d--PV-~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMK--------------K--PV-KNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCS--------------S--EE-EESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhc--------------C--CE-EcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 46778999999987 2 23 565 999999999999997631 12368999 9865
No 60
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=3.1e-07 Score=70.03 Aligned_cols=44 Identities=20% Similarity=0.542 Sum_probs=35.1
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCCCH-hhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHV-FHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHV-FHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
+...|+||++.+. + ...+||||+ |..+|+++. ..||+||..+..
T Consensus 24 ~~~~C~IC~~~~~--------------~---~~~~pCgH~~~C~~C~~~~--------~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNI--------------A---IVFVPCGHLVTCKQCAEAV--------DKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCC--------------C---BCCSSSCCCCBCHHHHHHC--------SBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCC--------------C---EEEecCCCHHHHHHHhhCC--------CCCccCCceecC
Confidence 4457999998876 1 346899999 999999753 379999998874
No 61
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.23 E-value=3.6e-07 Score=90.84 Aligned_cols=90 Identities=22% Similarity=0.402 Sum_probs=53.7
Q ss_pred ccccCCCCCh----hhhccc-C--CCCCcccccCCCCCCCCccccccccchhccCCCcccccccCCCCCCc--eeecCCC
Q 016977 169 AHRWSSASSS----VDFADV-S--EPFESESFGQSYVPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVV--GVLSCRH 239 (379)
Q Consensus 169 ~~~ws~asS~----~d~~di-~--e~~~~es~~~~~~p~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vV--aVLPCGH 239 (379)
-..|....+- ++++++ + .....+....-........|+||+..+.+ .+..+.. .-+.|||
T Consensus 268 l~~Wd~d~si~eNL~~IL~i~~fP~p~~~~~~~~~e~ee~~~ECaICys~~l~-----------~g~lPdk~C~n~~C~h 336 (381)
T 3k1l_B 268 LSNWDSEMNIHKNLLRMFDLCYFPMPDWSDGPKLDEEDNEELRCNICFAYRLD-----------GGEVPLVSCDNAKCVL 336 (381)
T ss_dssp HHTCCTTSCHHHHHHHHTTCSSCCCCCGGGCCSCTTCCCSCCSCSSSCCSSCT-----------TCCCCCBCCSCTTCCC
T ss_pred hhhcCccCCHHHHHHHHhCccccCCCcccccccccccccCCccCcccceeecC-----------CCCCccccccCCccCC
Confidence 5678776554 346666 2 22222211000112466789999998772 1122211 2358999
Q ss_pred HhhHHHHHhhccCCCC-------CCCCCccccccccc
Q 016977 240 VFHAECLEQTTPKTQK-------SDPSCPICLRLQEE 269 (379)
Q Consensus 240 VFHaeCLeqWL~k~~~-------~d~tCPLCRs~~~~ 269 (379)
.||..||.+||..... -..+||.|+..+..
T Consensus 337 ~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 337 KCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred ccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 9999999999964210 11479999998875
No 62
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.23 E-value=2.9e-07 Score=68.73 Aligned_cols=49 Identities=24% Similarity=0.470 Sum_probs=38.8
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceee--cCCCH-hhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVL--SCRHV-FHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVL--PCGHV-FHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
.....|.||++... + ..++ ||||+ |-.+|+.+|.... ..||+||..+..
T Consensus 5 ~~~~~C~IC~~~~~--------------~---~~~~~~pCgH~~~C~~C~~~~~~~~----~~CPiCR~~i~~ 56 (63)
T 2vje_B 5 NLLKPCSLCEKRPR--------------D---GNIIHGRTGHLVTCFHCARRLKKAG----ASCPICKKEIQL 56 (63)
T ss_dssp GGGSBCTTTSSSBS--------------C---EEEEETTEEEEEECHHHHHHHHHTT----CBCTTTCCBCCE
T ss_pred CcCCCCcccCCcCC--------------C---eEEEecCCCCHhHHHHHHHHHHHhC----CcCCCcCchhhc
Confidence 35567999998765 1 3345 99998 9999999998654 589999998864
No 63
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.18 E-value=4.3e-07 Score=68.25 Aligned_cols=49 Identities=22% Similarity=0.453 Sum_probs=36.7
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCC--C---HhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCR--H---VFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCG--H---VFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
+...|.||++... .+ . ++||. | .||.+||++|+.... +.+||+|+..+.
T Consensus 5 ~~~~CrIC~~~~~---------------~~-l-~~PC~C~gs~~~~H~~Cl~~W~~~~~--~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELG---------------NE-R-FRACGCTGELENVHRSCLSTWLTISR--NTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECS---------------CC-C-CCSCCCSSGGGSCCHHHHHHHHHHHT--CSBCTTTCCBCC
T ss_pred CCCEeEEeecCCC---------------Cc-e-ecCcCCCCchhhhHHHHHHHHHHhCC--CCccCCCCCeee
Confidence 5668999998632 12 2 57865 4 999999999997532 268999999875
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.06 E-value=1.1e-06 Score=79.20 Aligned_cols=50 Identities=6% Similarity=0.073 Sum_probs=41.0
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
-+...|+||++.+. | ..+++|||+|-..||+.|+.... .+||+|+..+..
T Consensus 104 p~~f~CPI~~elm~--------------D---PV~~~~Ghtfer~~I~~~l~~~~---~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMR--------------E---PCITPSGITYDRKDIEEHLQRVG---HFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCS--------------S---EEECTTSCEEEHHHHHHHHHHTC---SBCTTTCCBCCG
T ss_pred cHhhcccCccccCC--------------C---CeECCCCCEECHHHHHHHHHhCC---CCCCCCcCCCCh
Confidence 47788999999987 2 23569999999999999998642 379999998863
No 65
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.98 E-value=1.6e-06 Score=67.55 Aligned_cols=44 Identities=25% Similarity=0.514 Sum_probs=36.4
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCCCH-hhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHV-FHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHV-FHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
+...|.||++.+. .+..+||||+ |-.+|+..|. .||+||..+..
T Consensus 17 ~~~~C~IC~~~~~-----------------~~v~~pCgH~~~C~~C~~~~~--------~CP~Cr~~i~~ 61 (79)
T 2yho_A 17 EAMLCMVCCEEEI-----------------NSTFCPCGHTVCCESCAAQLQ--------SCPVCRSRVEH 61 (79)
T ss_dssp HHTBCTTTSSSBC-----------------CEEEETTCBCCBCHHHHTTCS--------BCTTTCCBCCE
T ss_pred CCCEeEEeCcccC-----------------cEEEECCCCHHHHHHHHHhcC--------cCCCCCchhhC
Confidence 3457999998765 2567899999 9999999883 69999999875
No 66
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.97 E-value=3e-06 Score=64.44 Aligned_cols=45 Identities=24% Similarity=0.636 Sum_probs=36.5
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCH-hhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHV-FHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHV-FHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
.+...|.||++... .+..|||||+ |...|+... ..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~-----------------~~v~~pCgH~~~C~~C~~~~--------~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTV-----------------NWVLLPCRHTCLCDGCVKYF--------QQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCC-----------------CCEETTTTBCCSCTTHHHHC--------SSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCC-----------------CEEEECCCChhhhHHHHhcC--------CCCCCCCcchhc
Confidence 35678999998765 2567899999 999999942 379999999875
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.97 E-value=1.3e-06 Score=68.86 Aligned_cols=52 Identities=23% Similarity=0.470 Sum_probs=37.8
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCC----CCCCCCCcc--cccc
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKT----QKSDPSCPI--CLRL 266 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~----~~~d~tCPL--CRs~ 266 (379)
....|+||++.+.. ...+.+++|||.|..+||.+++... ......||. |+..
T Consensus 4 ~~~~C~IC~~~~~~--------------~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPV--------------EQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBG--------------GGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCccccc--------------ccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 45679999999861 1123334799999999999998642 112358999 9988
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.86 E-value=2.5e-06 Score=83.34 Aligned_cols=44 Identities=25% Similarity=0.586 Sum_probs=37.0
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCCCH-hhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHV-FHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHV-FHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
+...|+||++.+. .+..|||||. |...|+..| ..||+||..+..
T Consensus 294 ~~~~C~IC~~~~~-----------------~~v~lpCgH~~fC~~C~~~~--------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEV-----------------SVVFIPCGHLVVCQECAPSL--------RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBC-----------------CEEEETTCCEEECTTTGGGC--------SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCC-----------------ceEEcCCCChhHhHHHHhcC--------CcCCCCCCCccC
Confidence 4578999999876 1456799999 999999999 269999999864
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.82 E-value=4.9e-06 Score=79.63 Aligned_cols=51 Identities=16% Similarity=0.358 Sum_probs=41.0
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcc--cccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPI--CLRLQE 268 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPL--CRs~~~ 268 (379)
.....|+||++.|.+ +|....|||+|-..||.+|+.... ..+||+ |+..+.
T Consensus 179 ~~el~CPIcl~~f~D----------------PVts~~CGHsFcR~cI~~~~~~~~--~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKPYEA----------------PLISRKCNHVFDRDGIQNYLQGYT--TRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSBCSS----------------EEEESSSCCEEEHHHHHHHSTTCS--CEECSGGGCSCEEC
T ss_pred ceeeECcCccCcccC----------------CeeeCCCCCcccHHHHHHHHHhCC--CCCCCcccccCcCc
Confidence 366789999999971 354569999999999999997532 258999 999775
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.67 E-value=9.5e-06 Score=60.89 Aligned_cols=47 Identities=19% Similarity=0.217 Sum_probs=38.2
Q ss_pred CccccccccchhccCCCcccccccCCCCCCceee-cCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 202 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVL-SCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 202 ~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVL-PCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
...|+||++.+. | -.++ +|||+|=..||++|+.+. .+||+++..+..
T Consensus 3 ~~~CpIs~~~m~--------------d---PV~~~~sG~~yer~~I~~~l~~~----~~cP~t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKVPR--------------R---PVLSPKSRTIFEKSLLEQYVKDT----GNDPITNEPLSI 50 (61)
T ss_dssp -CCCTTTCSCCS--------------S---EEEETTTTEEEEHHHHHHHHHHH----SBCTTTCCBCCG
T ss_pred eEEecCCCCCCC--------------C---CEEeCCCCcEEcHHHHHHHHHhC----CCCcCCcCCCCh
Confidence 357999999987 2 2355 899999999999999864 479999998864
No 71
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.55 E-value=4.2e-05 Score=71.20 Aligned_cols=54 Identities=22% Similarity=0.541 Sum_probs=40.4
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccccCCC
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEENSP 272 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~~~~ 272 (379)
....|.||.+.+.+ + +.=-.|+|.||.+|+..|+.... ...||.|+..|....+
T Consensus 179 ~i~~C~iC~~iv~~-------------g---~~C~~C~~~~H~~C~~~~~~~~~--~~~CP~C~~~W~~~~~ 232 (238)
T 3nw0_A 179 AVKICNICHSLLIQ-------------G---QSCETCGIRMHLPCVAKYFQSNA--EPRCPHCNDYWPHEIP 232 (238)
T ss_dssp TCCBCTTTCSBCSS-------------C---EECSSSCCEECHHHHHHHTTTCS--SCBCTTTCCBCCSCCC
T ss_pred CCCcCcchhhHHhC-------------C---cccCccChHHHHHHHHHHHHhCC--CCCCCCCCCCCCCCCC
Confidence 47789999998872 0 10113999999999999997542 3689999999975433
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.15 E-value=0.00014 Score=61.01 Aligned_cols=47 Identities=23% Similarity=0.494 Sum_probs=38.7
Q ss_pred cccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 204 KCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 204 ~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
-|.+|.-++.- ..+.+||.|||-.+|+..|..+.. .+||+|+..+..
T Consensus 3 fC~~C~~Pi~i----------------ygRmIPCkHvFCydCa~~~~~~~~---k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKV----------------YGRMIPCKHVFCYDCAILHEKKGD---KMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSE----------------EEEEETTCCEEEHHHHHHHHHTTC---CBCTTTCCBCSE
T ss_pred ecCccCCCeEE----------------EeeeccccccHHHHHHHHHHhccC---CCCcCcCCeeee
Confidence 48889888761 256889999999999999987653 699999999873
No 73
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=93.39 E-value=0.073 Score=40.72 Aligned_cols=52 Identities=19% Similarity=0.426 Sum_probs=36.2
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
.....|.||.+. . ++ +.=-.|..+||..||+..|......+..||.|.....
T Consensus 10 ~~~~~C~vC~~~-~--------------~l--l~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~ 61 (66)
T 2lri_C 10 APGARCGVCGDG-T--------------DV--LRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVT 61 (66)
T ss_dssp CTTCCCTTTSCC-T--------------TC--EECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCC
T ss_pred CCCCCcCCCCCC-C--------------eE--EECCCCCCceecccCCCccCcCCCCCEECccccCCCc
Confidence 456679999743 1 11 1112699999999999888765445689999986543
No 74
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=90.81 E-value=0.12 Score=39.33 Aligned_cols=55 Identities=18% Similarity=0.461 Sum_probs=35.8
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
.+...|.||..... +...+.-=.|.-.||..||.--+......+..||.|+....
T Consensus 16 ~~~~~C~~C~~~~~--------------~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDD--------------GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCS--------------SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCC--------------CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 35566999987743 11112112689999999998766543223588999987654
No 75
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=89.54 E-value=0.38 Score=39.51 Aligned_cols=52 Identities=23% Similarity=0.488 Sum_probs=32.5
Q ss_pred CCCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhh------------ccCCCCCCCCCccccc
Q 016977 199 PSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQT------------TPKTQKSDPSCPICLR 265 (379)
Q Consensus 199 p~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqW------------L~k~~~~d~tCPLCRs 265 (379)
...+..|.||...=. .++-. =..|+-|||..||++. +.-.......||-|..
T Consensus 12 ~~~D~~C~VC~~~t~-------------~~l~p--CRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 12 VVNDEMCDVCEVWTA-------------ESLFP--CRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CCCSCCCTTTCCCCS-------------SCCSS--CSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred CCCCcccCccccccc-------------cceec--cccccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 356778999984422 11111 1268999999999996 2111223478999944
No 76
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=88.13 E-value=0.33 Score=34.43 Aligned_cols=31 Identities=26% Similarity=0.628 Sum_probs=23.3
Q ss_pred cCCCHhhHHHHHhhccCCCCCCCCCcccccc
Q 016977 236 SCRHVFHAECLEQTTPKTQKSDPSCPICLRL 266 (379)
Q Consensus 236 PCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~ 266 (379)
.|...||..||+.=+.+....+..||.|+..
T Consensus 20 ~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 20 ECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp TTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 6889999999986555433345789999764
No 77
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=85.87 E-value=0.53 Score=35.03 Aligned_cols=31 Identities=29% Similarity=0.716 Sum_probs=23.9
Q ss_pred cCCCHhhHHHHHhhccCCCCCCCCCcccccc
Q 016977 236 SCRHVFHAECLEQTTPKTQKSDPSCPICLRL 266 (379)
Q Consensus 236 PCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~ 266 (379)
.|--.||..||..-+......+..||.|...
T Consensus 28 ~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 28 TCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 6888999999998665443345899999764
No 78
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=85.66 E-value=0.66 Score=37.74 Aligned_cols=30 Identities=23% Similarity=0.568 Sum_probs=21.7
Q ss_pred CC-CHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 237 CR-HVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 237 CG-HVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
|. .-||..|+. |......+.-||.|+....
T Consensus 57 C~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 57 CSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred CCCCCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 66 689999998 4333334588999987654
No 79
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=83.97 E-value=0.18 Score=37.35 Aligned_cols=56 Identities=21% Similarity=0.474 Sum_probs=36.3
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCC-CCCCCCcccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQ-KSDPSCPICLRLQE 268 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~-~~d~tCPLCRs~~~ 268 (379)
.....|+||.+.+.. +..-|.--.|..-||..|+.--..... .....||.|+....
T Consensus 4 ~e~~~C~~C~~~~~~-------------~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~~ 60 (64)
T 1we9_A 4 GSSGQCGACGESYAA-------------DEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSG 60 (64)
T ss_dssp SSCCCCSSSCCCCCS-------------SSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTC
T ss_pred CCCCCCCCCCCccCC-------------CCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcCC
Confidence 355679999988751 111233337889999999976543211 13489999987544
No 80
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=80.40 E-value=0.51 Score=38.27 Aligned_cols=52 Identities=19% Similarity=0.454 Sum_probs=33.2
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLR 265 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs 265 (379)
..+..|.||.+.-. ..+.+.=-.|+..||..||+..+.........||-|+.
T Consensus 5 ~~~~~C~~C~~~g~--------------~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~~ 56 (111)
T 2ysm_A 5 SSGANCAVCDSPGD--------------LLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECKV 56 (111)
T ss_dssp CCCSCBTTTCCCCC--------------TTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTCC
T ss_pred CCCCCCcCCCCCCC--------------CcCCeECCCCCCCcChHHhCCccccccccCccCCcCCc
Confidence 46678999986522 01112223799999999999887543223467777753
No 81
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.00 E-value=0.33 Score=35.37 Aligned_cols=49 Identities=22% Similarity=0.557 Sum_probs=33.1
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLR 265 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs 265 (379)
.....|.||.+. . ++ +.=-.|...||..||..-+......+..||.|..
T Consensus 7 ~~~~~C~vC~~~-g--------------~l--l~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS-G--------------QL--LMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS-S--------------CC--EECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC-C--------------eE--EEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 356679999864 1 11 2122788999999999765544334578999965
No 82
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=78.41 E-value=0.4 Score=35.68 Aligned_cols=32 Identities=25% Similarity=0.663 Sum_probs=24.1
Q ss_pred cCCCHhhHHHHHhhccCCCCCCCCCccccccc
Q 016977 236 SCRHVFHAECLEQTTPKTQKSDPSCPICLRLQ 267 (379)
Q Consensus 236 PCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~ 267 (379)
.|-.+||..||..-+......+..||.|....
T Consensus 26 ~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 26 TCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 58899999999976554433457899998653
No 83
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=78.18 E-value=0.5 Score=42.30 Aligned_cols=32 Identities=28% Similarity=0.545 Sum_probs=25.2
Q ss_pred cCCCHhhHHHHHhhccCCCCCCCCCccccccc
Q 016977 236 SCRHVFHAECLEQTTPKTQKSDPSCPICLRLQ 267 (379)
Q Consensus 236 PCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~ 267 (379)
.|..+||..||..-+......+..||.|+..-
T Consensus 24 ~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 24 KCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 58899999999887765444458899999764
No 84
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=77.53 E-value=0.33 Score=36.02 Aligned_cols=57 Identities=16% Similarity=0.315 Sum_probs=35.1
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCC---CCCCCCCcccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKT---QKSDPSCPICLRLQE 268 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~---~~~d~tCPLCRs~~~ 268 (379)
.....|.||.....+ .+...+.=-.|.-.||..|+..-+... ...+..||.|.....
T Consensus 4 ~~~~~C~vC~~~~~~------------~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 4 GSSGVCTICQEEYSE------------APNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCCBSSSCCCCCB------------TTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCC------------CCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 456789999976431 011111112688999999998754320 123478999986543
No 85
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=77.45 E-value=0.95 Score=35.39 Aligned_cols=36 Identities=19% Similarity=0.535 Sum_probs=25.6
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHh-hc
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQ-TT 250 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeq-WL 250 (379)
++..|.||++.+. ...+..=+.|+|.|-..||+. |.
T Consensus 2 ee~~C~~C~~~~~--------------~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPA--------------QDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSC--------------CBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCC--------------CCceEECCcCChHHhHHHCHHHhc
Confidence 3467999997643 112222289999999999998 54
No 86
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=77.35 E-value=0.6 Score=40.87 Aligned_cols=33 Identities=27% Similarity=0.579 Sum_probs=25.6
Q ss_pred cCCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 236 SCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 236 PCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
.|--+||..|+..-+......+..||.|+....
T Consensus 21 ~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 21 KCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 588999999998877654444588999997653
No 87
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=76.88 E-value=0.35 Score=38.52 Aligned_cols=34 Identities=18% Similarity=0.530 Sum_probs=25.3
Q ss_pred cCCCHhhHHHHHhhccC----CCCCCCCCccccccccc
Q 016977 236 SCRHVFHAECLEQTTPK----TQKSDPSCPICLRLQEE 269 (379)
Q Consensus 236 PCGHVFHaeCLeqWL~k----~~~~d~tCPLCRs~~~~ 269 (379)
.|...||..|+..-|.. ....+..|+.|......
T Consensus 38 ~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 38 ECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp SSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 68999999999976652 22235889999876653
No 88
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=75.12 E-value=0.59 Score=35.14 Aligned_cols=52 Identities=19% Similarity=0.505 Sum_probs=34.8
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
.....|.||.+. . ++ +.=-.|--.||..||..-+......+..||.|.....
T Consensus 6 ~~~~~C~vC~~~-g--------------~l--l~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 57 (66)
T 1xwh_A 6 KNEDECAVCRDG-G--------------EL--ICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATV 57 (66)
T ss_dssp SCCCSBSSSSCC-S--------------SC--EECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTCC
T ss_pred CCCCCCccCCCC-C--------------CE--EEcCCCChhhcccccCCCcCcCCCCCeECccccCccc
Confidence 456779999853 1 11 1112688999999999655543334578999986554
No 89
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=74.17 E-value=1.6 Score=35.48 Aligned_cols=33 Identities=24% Similarity=0.610 Sum_probs=25.3
Q ss_pred cCCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 236 SCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 236 PCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
.|--+||..||..=+......+..||.|...-.
T Consensus 42 ~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~ 74 (88)
T 1fp0_A 42 QCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD 74 (88)
T ss_dssp TSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCS
T ss_pred CCCCceecccCCCCCCCCcCCCcCCccccCCCc
Confidence 688899999998776554444688999987644
No 90
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.96 E-value=0.35 Score=38.92 Aligned_cols=55 Identities=22% Similarity=0.455 Sum_probs=35.0
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
.+...|.||.+.-.. ...+.==.|...||..||..=|......+..||.|.....
T Consensus 14 ~~~~~C~vC~~~~~~--------------~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~~ 68 (92)
T 2e6r_A 14 IDSYICQVCSRGDED--------------DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAEC 68 (92)
T ss_dssp CCCCCCSSSCCSGGG--------------GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHHHH
T ss_pred cCCCCCccCCCcCCC--------------CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCccc
Confidence 566789999876320 0011111689999999998544433333578999987543
No 91
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=72.36 E-value=2.3 Score=32.84 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=23.6
Q ss_pred cCCCHhhHHHHHhhccC-----CCCCCCCCccccccccc
Q 016977 236 SCRHVFHAECLEQTTPK-----TQKSDPSCPICLRLQEE 269 (379)
Q Consensus 236 PCGHVFHaeCLeqWL~k-----~~~~d~tCPLCRs~~~~ 269 (379)
.|..-||..|+.---.. .......||.|+.....
T Consensus 37 ~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~~ 75 (78)
T 1wew_A 37 RCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGP 75 (78)
T ss_dssp TTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCSC
T ss_pred cCCccccCEEEccccccccccccCCCCEECCCCCcccCC
Confidence 69999999999754322 11234899999876553
No 92
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=72.04 E-value=1.2 Score=37.17 Aligned_cols=47 Identities=23% Similarity=0.451 Sum_probs=37.2
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCC-CHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCR-HVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCG-HVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
..-..|-.|--... .++.|. |.+-..||...|...+ .||||.+.+--
T Consensus 26 ~G~~nCKsCWf~~k-------------------~LV~C~dHYLCl~CLtlmL~~Sd----rCpIC~~pLPt 73 (99)
T 2ko5_A 26 LGPQFCKSCWFENK-------------------GLVECNNHYLCLNCLTLLLSVSN----RCPICKMPLPT 73 (99)
T ss_dssp SCCCCCCSSCSCCS-------------------SEEECSSCEEEHHHHHHTCSSSS----EETTTTEECCC
T ss_pred cCcccChhhccccC-------------------CeeeecchhhHHHHHHHHHhhcc----CCcccCCcCCc
Confidence 45567999975533 256777 9999999999998874 89999998863
No 93
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=71.43 E-value=2.1 Score=32.92 Aligned_cols=30 Identities=23% Similarity=0.568 Sum_probs=21.8
Q ss_pred CC-CHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 237 CR-HVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 237 CG-HVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
|. ..||..|+. |......+.-||.|+....
T Consensus 37 C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 37 CSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp CSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 66 689999998 4433334588999987654
No 94
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=71.18 E-value=0.59 Score=37.90 Aligned_cols=32 Identities=19% Similarity=0.431 Sum_probs=24.0
Q ss_pred cCCCHhhHHHHHhhccCCCCCCCCCccccccc
Q 016977 236 SCRHVFHAECLEQTTPKTQKSDPSCPICLRLQ 267 (379)
Q Consensus 236 PCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~ 267 (379)
.|...||..||+.=+......+..||.|....
T Consensus 74 ~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~ 105 (111)
T 2ysm_A 74 TCDKGYHTFCLQPVMKSVPTNGWKCKNCRICI 105 (111)
T ss_dssp SSCCEEEGGGSSSCCSSCCSSCCCCHHHHCCS
T ss_pred CCCcHHhHHhcCCccccCCCCCcCCcCCcCcC
Confidence 68899999999865554333457899997654
No 95
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=71.11 E-value=2 Score=33.12 Aligned_cols=50 Identities=26% Similarity=0.488 Sum_probs=32.6
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceee--cCCCHhhHHHHHhh-ccCCCCCCCCCcccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVL--SCRHVFHAECLEQT-TPKTQKSDPSCPICLRL 266 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVL--PCGHVFHaeCLeqW-L~k~~~~d~tCPLCRs~ 266 (379)
.....|.||.+.-.. .+. .-++ .|.-.||..|+.-- +++. +..||.|+..
T Consensus 14 ~~~~~C~vC~~~~s~------------~~~--~ll~CD~C~~~~H~~Cl~~~~vP~g---~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQ------------NSN--VILFCDMCNLAVHQECYGVPYIPEG---QWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCC------------SSS--CEEECSSSCCEEEHHHHTCSSCCSS---CCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCC------------CCC--CEEECCCCCCccccccCCCCcCCCC---CcCCccCcCc
Confidence 467789999876320 011 1122 68899999999853 3332 4789999764
No 96
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=70.78 E-value=1.9 Score=33.80 Aligned_cols=31 Identities=29% Similarity=0.612 Sum_probs=22.6
Q ss_pred cCCCHhhHHHHHhhccCCCCCC-CCCcccccc
Q 016977 236 SCRHVFHAECLEQTTPKTQKSD-PSCPICLRL 266 (379)
Q Consensus 236 PCGHVFHaeCLeqWL~k~~~~d-~tCPLCRs~ 266 (379)
.|...||..||+.-|......+ ..||.|+.+
T Consensus 46 ~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~d 77 (77)
T 3shb_A 46 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 77 (77)
T ss_dssp TTCCEEETTTSSSCCSSCCSSSCCCCTTTC--
T ss_pred CCCCccCcccCCCcccCCCCCCceECcCcccc
Confidence 5889999999997666544334 789999863
No 97
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=70.76 E-value=0.51 Score=34.72 Aligned_cols=51 Identities=22% Similarity=0.498 Sum_probs=34.1
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
....|.||.+. . ++ +.=-.|.-.||..||..-+......+..||.|.....
T Consensus 4 ~~~~C~vC~~~-g--------------~l--l~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 4 HEDFCSVCRKS-G--------------QL--LMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCSSCTTTCCC-S--------------SC--EECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCcCCCCC-C--------------cE--EEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 45679999863 1 11 1112688999999999655543334578999976554
No 98
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=67.83 E-value=1.2 Score=39.64 Aligned_cols=33 Identities=24% Similarity=0.610 Sum_probs=24.9
Q ss_pred cCCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 236 SCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 236 PCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
.|--+||..||..=+......+..||.|+....
T Consensus 19 ~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~~ 51 (189)
T 2ro1_A 19 QCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD 51 (189)
T ss_dssp TTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSCC
T ss_pred CCCchhccccCCCCcccCCCCCCCCcCccCCCC
Confidence 588999999998766544334578999987643
No 99
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=66.17 E-value=1.4 Score=33.71 Aligned_cols=53 Identities=21% Similarity=0.535 Sum_probs=32.4
Q ss_pred CccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCC-----CCCCCCCccccccccc
Q 016977 202 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKT-----QKSDPSCPICLRLQEE 269 (379)
Q Consensus 202 ~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~-----~~~d~tCPLCRs~~~~ 269 (379)
...| ||.+... +...|.=-.|..-||..|+.--.... ......||.|+...+.
T Consensus 16 ~~~C-~C~~~~~--------------~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~p 73 (76)
T 1wem_A 16 ALYC-ICRQPHN--------------NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGP 73 (76)
T ss_dssp CCCS-TTCCCCC--------------SSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCS
T ss_pred CCEE-ECCCccC--------------CCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccCc
Confidence 3457 8988754 11123333699999999996432210 0124799999876654
No 100
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=65.15 E-value=2.4 Score=33.79 Aligned_cols=51 Identities=25% Similarity=0.494 Sum_probs=33.6
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceee---cCCCHhhHHHHHhh-ccCCCCCCCCCcccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVL---SCRHVFHAECLEQT-TPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVL---PCGHVFHaeCLeqW-L~k~~~~d~tCPLCRs~~~ 268 (379)
.+...|.||.+.-.. +. -.+| .|.-.||..|+.-- ++.. +.-||.|.....
T Consensus 23 ~~~~~C~vC~~~~s~-------------~~--~~ll~CD~C~~~fH~~Cl~p~~vP~g---~W~C~~C~~~~~ 77 (88)
T 2l43_A 23 DEDAVCSICMDGESQ-------------NS--NVILFCDMCNLAVHQECYGVPYIPEG---QWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCSSCCSSSSC-------------SE--EEEEECSSSCCCCCHHHHTCSSCCSS---CCCCHHHHHHTT
T ss_pred CCCCcCCcCCCCCCC-------------CC--CCEEECCCCCchhhcccCCCCccCCC---ceECccccCccc
Confidence 456789999875320 00 1122 68889999999854 3333 478999987655
No 101
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=64.85 E-value=1.3 Score=35.73 Aligned_cols=30 Identities=17% Similarity=0.377 Sum_probs=21.2
Q ss_pred cCCCHhhHHHHHhhccCCCCCCCCCcccccc
Q 016977 236 SCRHVFHAECLEQTTPKTQKSDPSCPICLRL 266 (379)
Q Consensus 236 PCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~ 266 (379)
.|.-.||..|+.--+.... .+..||.|+..
T Consensus 47 ~C~~w~H~~C~~~~~~~~p-~~w~C~~C~~~ 76 (98)
T 2lv9_A 47 KCSVWQHIDCMGIDRQHIP-DTYLCERCQPR 76 (98)
T ss_dssp TTCBEEETTTTTCCTTSCC-SSBCCTTTSSS
T ss_pred CCCCcCcCcCCCCCccCCC-CCEECCCCcCC
Confidence 6889999999975433221 24799999743
No 102
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.98 E-value=1.5 Score=34.29 Aligned_cols=30 Identities=27% Similarity=0.592 Sum_probs=22.5
Q ss_pred cCCCHhhHHHHHhhccCCCCC-CCCCccccc
Q 016977 236 SCRHVFHAECLEQTTPKTQKS-DPSCPICLR 265 (379)
Q Consensus 236 PCGHVFHaeCLeqWL~k~~~~-d~tCPLCRs 265 (379)
.|...||..||+.=|...... +..||.|..
T Consensus 46 ~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 46 ECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 688999999999655443333 578999975
No 103
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=61.34 E-value=2.2 Score=34.93 Aligned_cols=30 Identities=33% Similarity=0.638 Sum_probs=23.5
Q ss_pred cCCCHhhHHHHHhhccCCCCCCCCCccccc
Q 016977 236 SCRHVFHAECLEQTTPKTQKSDPSCPICLR 265 (379)
Q Consensus 236 PCGHVFHaeCLeqWL~k~~~~d~tCPLCRs 265 (379)
.|-..||..||+.-|......+..||.|+.
T Consensus 82 ~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 82 SCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp TTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 588999999998766654444578999974
No 104
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=61.29 E-value=4.9 Score=35.09 Aligned_cols=30 Identities=20% Similarity=0.544 Sum_probs=21.9
Q ss_pred cCCCHhhHHHHHhhccC-------CCCCCCCCccccc
Q 016977 236 SCRHVFHAECLEQTTPK-------TQKSDPSCPICLR 265 (379)
Q Consensus 236 PCGHVFHaeCLeqWL~k-------~~~~d~tCPLCRs 265 (379)
.|--+||..||+.=+.. ....+..||+|..
T Consensus 80 ~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 80 FCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 68899999999965531 1223489999974
No 105
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=61.28 E-value=4.6 Score=30.80 Aligned_cols=31 Identities=26% Similarity=0.591 Sum_probs=22.9
Q ss_pred cCCCHhhHHHHHhhccCCCCC-CCCCcccccc
Q 016977 236 SCRHVFHAECLEQTTPKTQKS-DPSCPICLRL 266 (379)
Q Consensus 236 PCGHVFHaeCLeqWL~k~~~~-d~tCPLCRs~ 266 (379)
.|...||..||+.=|.+.... +..||.|+..
T Consensus 38 ~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 38 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp TTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 588999999999655443333 5789999854
No 106
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=60.63 E-value=0.81 Score=37.70 Aligned_cols=34 Identities=26% Similarity=0.641 Sum_probs=25.3
Q ss_pred cCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 236 SCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 236 PCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
.|...||..||..=+......+..||.|...+..
T Consensus 78 ~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~~ 111 (114)
T 2kwj_A 78 DCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKE 111 (114)
T ss_dssp SSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHHH
T ss_pred CCCccccccccCCCccCCCCCCeECccccchhhc
Confidence 6889999999996554433345789999876653
No 107
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=60.26 E-value=1.7 Score=39.04 Aligned_cols=55 Identities=16% Similarity=0.405 Sum_probs=33.9
Q ss_pred CccccccccchhccCCCcccccccCCCC--CCceeecCCCHhhHHHHHhhcc---C-C---CCCCCCCcccccccc
Q 016977 202 TFKCGLCERFLSQRSPWSSRRIVRSGDM--PVVGVLSCRHVFHAECLEQTTP---K-T---QKSDPSCPICLRLQE 268 (379)
Q Consensus 202 ~~~CaICle~LsqrsP~ss~~iv~~gD~--~vVaVLPCGHVFHaeCLeqWL~---k-~---~~~d~tCPLCRs~~~ 268 (379)
+..|+||.+.+.. ++. .-|.=-.|..-||..|+.---. . . ......||.|+....
T Consensus 2 G~~CpiC~k~Y~~------------~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 2 GNFCPLCDKCYDD------------DDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CCBCTTTCCBCTT------------CCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred cCcCCCCcCccCC------------cccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 3569999999872 111 1122236889999999853211 0 0 001379999998765
No 108
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=59.33 E-value=1.7 Score=37.37 Aligned_cols=54 Identities=17% Similarity=0.506 Sum_probs=33.0
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccC-CCCCCCCCcccccccc
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPK-TQKSDPSCPICLRLQE 268 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k-~~~~d~tCPLCRs~~~ 268 (379)
....| ||...... +...+.-=.|.-.||..|+.--... .......||.|+..-.
T Consensus 7 ~~~~C-~C~~~~~~-------------~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 61 (174)
T 2ri7_A 7 TKLYC-ICKTPEDE-------------SKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTED 61 (174)
T ss_dssp CCEET-TTTEECCT-------------TSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHHH
T ss_pred CCcEe-eCCCCCCC-------------CCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcchhc
Confidence 45668 99987541 1111222268899999999643221 1122478999997653
No 109
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=58.36 E-value=4.2 Score=31.27 Aligned_cols=53 Identities=19% Similarity=0.422 Sum_probs=32.6
Q ss_pred CccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCC-CCCCCCCcccccccc
Q 016977 202 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKT-QKSDPSCPICLRLQE 268 (379)
Q Consensus 202 ~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~-~~~d~tCPLCRs~~~ 268 (379)
...| ||...+.. +..-|.--.|.--||..|+.--.... ......||.|+...+
T Consensus 12 ~~~C-~C~~~~d~-------------~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 12 PVYC-LCRQPYNV-------------NHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCCS-TTSCSCCS-------------SSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred ccEE-EcCCccCC-------------CCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 3446 99987641 11123333699999999996543221 112478999998664
No 110
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=53.10 E-value=1.6 Score=33.09 Aligned_cols=54 Identities=17% Similarity=0.321 Sum_probs=33.2
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
....| ||...... ....|.--.|.--||..|+.--..........||.|+....
T Consensus 15 ~~~~C-~C~~~~~~-------------g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~~ 68 (72)
T 1wee_A 15 WKVDC-KCGTKDDD-------------GERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSG 68 (72)
T ss_dssp SEECC-TTCCCSCC-------------SSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHCS
T ss_pred cceEe-eCCCccCC-------------CCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCCC
Confidence 34568 79877531 11123333688889999997653322234589999987544
No 111
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=51.03 E-value=2.6 Score=32.09 Aligned_cols=51 Identities=16% Similarity=0.427 Sum_probs=32.3
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRL 266 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~ 266 (379)
.+...| ||..... +..-|.=-.|.--||..|+.--.... .....||.|+..
T Consensus 17 ~~~~~C-iC~~~~~--------------~~~MIqCd~C~~WfH~~Cvgi~~~~~-~~~~~C~~C~~s 67 (68)
T 3o70_A 17 QGLVTC-FCMKPFA--------------GRPMIECNECHTWIHLSCAKIRKSNV-PEVFVCQKCRDS 67 (68)
T ss_dssp TTCCCS-TTCCCCT--------------TCCEEECTTTCCEEETTTTTCCTTSC-CSSCCCHHHHTC
T ss_pred CCceEe-ECCCcCC--------------CCCEEECCCCCccccccccCcCcccC-CCcEECCCCCCC
Confidence 355668 9987654 11123333699999999997543221 234799999753
No 112
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=48.79 E-value=3.8 Score=38.33 Aligned_cols=31 Identities=26% Similarity=0.591 Sum_probs=20.3
Q ss_pred cCCCHhhHHHHHhhccCCCCC-CCCCcccccc
Q 016977 236 SCRHVFHAECLEQTTPKTQKS-DPSCPICLRL 266 (379)
Q Consensus 236 PCGHVFHaeCLeqWL~k~~~~-d~tCPLCRs~ 266 (379)
.|...||..||+.=|...... +..||.|...
T Consensus 194 ~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 194 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp SSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 688999999999655543333 5789999754
No 113
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.39 E-value=7.3 Score=29.80 Aligned_cols=28 Identities=25% Similarity=0.517 Sum_probs=19.7
Q ss_pred CHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 239 HVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 239 HVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
.-||..|+.- .........||.|+....
T Consensus 30 ~WfH~~Cvgl--~~~p~~~w~Cp~C~~~~~ 57 (70)
T 1x4i_A 30 EWFHYGCVGL--TEAPKGKWYCPQCTAAMK 57 (70)
T ss_dssp CCEEHHHHTC--SSCCSSCCCCHHHHHHHH
T ss_pred cCCccccccc--CcCCCCCEECCCCCcccc
Confidence 7899999984 332233578999987653
No 114
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=46.00 E-value=24 Score=29.22 Aligned_cols=57 Identities=21% Similarity=0.428 Sum_probs=40.4
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
...+.|-||.+.+-- ..+++. -|+---|+--.-..|++-=..+.+ ..||-|+..|..
T Consensus 14 ~~~qiCqiCGD~VG~---------~~~Ge~-FVAC~eC~FPvCrpCyEYErkeG~---q~CpqCktrYkr 70 (93)
T 1weo_A 14 LDGQFCEICGDQIGL---------TVEGDL-FVACNECGFPACRPCYEYERREGT---QNCPQCKTRYKR 70 (93)
T ss_dssp CSSCBCSSSCCBCCB---------CSSSSB-CCSCSSSCCCCCHHHHHHHHHTSC---SSCTTTCCCCCC
T ss_pred cCCCccccccCcccc---------CCCCCE-EEeeeccCChhhHHHHHHHHhccC---ccccccCCcccc
Confidence 466889999998651 112222 234446887778899998777665 699999999974
No 115
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=45.92 E-value=1.4 Score=31.61 Aligned_cols=48 Identities=21% Similarity=0.400 Sum_probs=28.7
Q ss_pred cccccccchhccCCCcccccccCCCCCCceee-cCCCHhhHHHHHhhccCCCCCCCCCcccc
Q 016977 204 KCGLCERFLSQRSPWSSRRIVRSGDMPVVGVL-SCRHVFHAECLEQTTPKTQKSDPSCPICL 264 (379)
Q Consensus 204 ~CaICle~LsqrsP~ss~~iv~~gD~~vVaVL-PCGHVFHaeCLeqWL~k~~~~d~tCPLCR 264 (379)
.|.||.+++.. +..-|.-- .|.-=||..|+.--.......+..||.|+
T Consensus 4 ~cc~C~~p~~~-------------~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKD-------------KVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCT-------------TCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCC-------------CCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 48899888751 12123333 58888999998754321111247899995
No 116
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=42.67 E-value=16 Score=29.68 Aligned_cols=52 Identities=19% Similarity=0.358 Sum_probs=29.7
Q ss_pred CccccccccchhccCCCcccccccCCCC-CCceeecCCCHhhHHHHHhh------ccCCCCCCCCCccccc
Q 016977 202 TFKCGLCERFLSQRSPWSSRRIVRSGDM-PVVGVLSCRHVFHAECLEQT------TPKTQKSDPSCPICLR 265 (379)
Q Consensus 202 ~~~CaICle~LsqrsP~ss~~iv~~gD~-~vVaVLPCGHVFHaeCLeqW------L~k~~~~d~tCPLCRs 265 (379)
...|.||+..=.+. + .++. +.+.=-.|+..||..||+.+ +... +..||-|+.
T Consensus 5 ~~~C~~C~~~~~~~------~---~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~---~W~C~~C~~ 63 (112)
T 3v43_A 5 IPICSFCLGTKEQN------R---EKKPEELISCADCGNSGHPSCLKFSPELTVRVKAL---RWQCIECKT 63 (112)
T ss_dssp CSSBTTTCCCTTCC------T---TSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTS---CCCCTTTCC
T ss_pred CccccccCCchhhC------c---CCCchhceEhhhcCCCCCCchhcCCHHHHHHhhcc---ccccccCCc
Confidence 45699998663210 0 0111 12322379999999999642 2222 367777763
No 117
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=41.43 E-value=12 Score=37.48 Aligned_cols=36 Identities=19% Similarity=0.433 Sum_probs=24.9
Q ss_pred CceeecCCCH--hhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 231 VVGVLSCRHV--FHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 231 vVaVLPCGHV--FHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
+++-..|.|+ |-++=+-+...+. ....||+|.+.+.
T Consensus 262 PvRg~~C~HlQCFDl~sfL~~~~~~--~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 262 PSKSINCKHLQCFDALWFLHSQLQI--PTWQCPVCQIDIA 299 (371)
T ss_dssp EEEETTCCSSCCEEHHHHHHHHHHS--CCCBCTTTCCBCC
T ss_pred cCcCCcCCCcceECHHHHHHHhhcC--CceeCCCCCcccC
Confidence 4677799998 6665555544332 2478999999884
No 118
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=39.81 E-value=2.8 Score=34.31 Aligned_cols=54 Identities=28% Similarity=0.627 Sum_probs=32.9
Q ss_pred CccccccccchhccCCCcccccccCCCCCCceee-cCCCHhhHHHHHhhccC------CCCCCCCCcccccccc
Q 016977 202 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVL-SCRHVFHAECLEQTTPK------TQKSDPSCPICLRLQE 268 (379)
Q Consensus 202 ~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVL-PCGHVFHaeCLeqWL~k------~~~~d~tCPLCRs~~~ 268 (379)
...|+||.+++.. +..-+.== .|.--||.+|+.--... .......||.|+....
T Consensus 3 ~~~C~iC~~p~~~-------------~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 3 VYPCGACRSEVND-------------DQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CCBCTTTCSBCCT-------------TSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred cCCCCCCCCccCC-------------CCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 3579999999762 11111111 57888999998643210 0112378999998654
No 119
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=39.09 E-value=13 Score=31.96 Aligned_cols=31 Identities=19% Similarity=0.469 Sum_probs=21.3
Q ss_pred cCCCHhhHHHHHhhcc-----C--CCCCCCCCcccccc
Q 016977 236 SCRHVFHAECLEQTTP-----K--TQKSDPSCPICLRL 266 (379)
Q Consensus 236 PCGHVFHaeCLeqWL~-----k--~~~~d~tCPLCRs~ 266 (379)
.|-.+||..||..-+. + .......|++|...
T Consensus 74 ~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 74 FCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp SSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 6889999999996421 1 11234799999653
No 120
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=38.99 E-value=3.8 Score=30.34 Aligned_cols=27 Identities=26% Similarity=0.673 Sum_probs=19.8
Q ss_pred CC-CHhhHHHHHhhccCCCCCCCCCccccc
Q 016977 237 CR-HVFHAECLEQTTPKTQKSDPSCPICLR 265 (379)
Q Consensus 237 CG-HVFHaeCLeqWL~k~~~~d~tCPLCRs 265 (379)
|. ..||..|+. |......+..||.|+.
T Consensus 31 C~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 31 CSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 65 689999998 4443334588999975
No 121
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=38.82 E-value=8 Score=31.67 Aligned_cols=55 Identities=22% Similarity=0.375 Sum_probs=30.0
Q ss_pred ccccccccchhccCCCcccccccCCCC-CCceeecCCCHhhHHHHHhhcc---CCCCCCCCCccccc
Q 016977 203 FKCGLCERFLSQRSPWSSRRIVRSGDM-PVVGVLSCRHVFHAECLEQTTP---KTQKSDPSCPICLR 265 (379)
Q Consensus 203 ~~CaICle~LsqrsP~ss~~iv~~gD~-~vVaVLPCGHVFHaeCLeqWL~---k~~~~d~tCPLCRs 265 (379)
..|.||+..-.. ++ +.++. +.+.=-.|+..||..||+.... ........||-|+.
T Consensus 2 ~~C~~C~~~~~~------n~--k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~ 60 (114)
T 2kwj_A 2 SYCDFCLGGSNM------NK--KSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKS 60 (114)
T ss_dssp CCCSSSCCBTTB------CT--TTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGCC
T ss_pred CcCccCCCCccc------cc--cCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccCc
Confidence 469999876431 00 01122 1122237999999999986532 11112367777753
No 122
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=37.45 E-value=14 Score=36.77 Aligned_cols=48 Identities=25% Similarity=0.459 Sum_probs=32.9
Q ss_pred ccccccccchhccCCCcccccccCCCCCCceeecCCCH--hhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 203 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHV--FHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 203 ~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHV--FHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
..|+|=...+. -+++-..|.|+ |-++=+-+...+. ....||+|.+.+.
T Consensus 216 L~CPlS~~ri~----------------~P~Rg~~C~HlqCFDl~sfL~~~~~~--~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 216 LMCPLGKMRLT----------------IPCRAVTCTHLQCFDAALYLQMNEKK--PTWICPVCDKKAA 265 (360)
T ss_dssp SBCTTTCSBCS----------------SEEEETTCCCCCCEEHHHHHHHHHHS--CCCBCTTTCSBCC
T ss_pred eeCCCccceec----------------cCCcCCCCCCCccCCHHHHHHHHhhC--CCeECCCCCcccC
Confidence 35777766655 23667799998 7766655554433 2478999999885
No 123
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=35.58 E-value=4.8 Score=29.79 Aligned_cols=27 Identities=30% Similarity=0.762 Sum_probs=19.7
Q ss_pred CC-CHhhHHHHHhhccCCCCCCCCCccccc
Q 016977 237 CR-HVFHAECLEQTTPKTQKSDPSCPICLR 265 (379)
Q Consensus 237 CG-HVFHaeCLeqWL~k~~~~d~tCPLCRs 265 (379)
|. .-||..|+. +......+..||.|+.
T Consensus 30 C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 30 CPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCCEecccCC--cccCCCCCEECcCccC
Confidence 66 699999999 4433334578999975
No 124
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.15 E-value=13 Score=27.30 Aligned_cols=40 Identities=25% Similarity=0.420 Sum_probs=27.3
Q ss_pred CCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 201 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 201 ~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
....|+.|.+.+. +.+. +..-+.+||.+|+ .|-.|...+.
T Consensus 8 ~~~~C~~C~~~I~--------------~~~~--v~a~~~~~H~~CF------------~C~~C~~~L~ 47 (76)
T 2cu8_A 8 MASKCPKCDKTVY--------------FAEK--VSSLGKDWHKFCL------------KCERCSKTLT 47 (76)
T ss_dssp CCCBCTTTCCBCC--------------TTTE--EEETTEEEETTTC------------BCSSSCCBCC
T ss_pred CCCCCcCCCCEeE--------------CCeE--EEECCeEeeCCCC------------CCCCCCCccC
Confidence 4567999998876 1222 3355788888773 5778877775
No 125
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=35.05 E-value=12 Score=31.06 Aligned_cols=31 Identities=19% Similarity=0.393 Sum_probs=21.2
Q ss_pred cCCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 236 SCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 236 PCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
.|-.+||..||. |......+..||-|.-..-
T Consensus 34 ~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C 64 (107)
T 4gne_A 34 DCPKAYHLLCLN--LTQPPYGKWECPWHQCDEC 64 (107)
T ss_dssp TCCCEECTGGGT--CSSCCSSCCCCGGGBCTTT
T ss_pred CCCcccccccCc--CCcCCCCCEECCCCCCCcC
Confidence 377899999998 4443333467998765443
No 126
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=34.70 E-value=6.1 Score=31.97 Aligned_cols=25 Identities=24% Similarity=0.495 Sum_probs=17.7
Q ss_pred CHhhHHHHHhhccCCCCCCCCCcc-ccc
Q 016977 239 HVFHAECLEQTTPKTQKSDPSCPI-CLR 265 (379)
Q Consensus 239 HVFHaeCLeqWL~k~~~~d~tCPL-CRs 265 (379)
--||..|+. |......+..||. |+.
T Consensus 50 eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 50 EWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp SCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred ccCcCccCC--CCcCCCCCccCChhhcc
Confidence 689999997 3332223588999 974
No 127
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=34.61 E-value=10 Score=31.13 Aligned_cols=12 Identities=33% Similarity=0.661 Sum_probs=10.1
Q ss_pred Cccccccccchh
Q 016977 202 TFKCGLCERFLS 213 (379)
Q Consensus 202 ~~~CaICle~Ls 213 (379)
...||||.+.|.
T Consensus 8 ~~~~PlCG~~L~ 19 (95)
T 2k5c_A 8 MAKCPICGSPLK 19 (95)
T ss_dssp CEECSSSCCEEC
T ss_pred cccCCcCCCccC
Confidence 457999999987
No 128
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=34.01 E-value=17 Score=30.51 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=17.6
Q ss_pred ecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 235 LSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 235 LPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
..||++| .+.+ .+ ...||.|++...+
T Consensus 71 ~~CG~~F----~~~~-~k----PsrCP~CkSe~Ie 96 (105)
T 2gmg_A 71 RKCGFVF----KAEI-NI----PSRCPKCKSEWIE 96 (105)
T ss_dssp TTTCCBC----CCCS-SC----CSSCSSSCCCCBC
T ss_pred hhCcCee----cccC-CC----CCCCcCCCCCccC
Confidence 4799999 1211 11 2579999999875
No 129
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=33.43 E-value=16 Score=27.51 Aligned_cols=53 Identities=23% Similarity=0.543 Sum_probs=31.4
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceee-cCCCHhhHHHHHhhccC------CCCCCCCCccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVL-SCRHVFHAECLEQTTPK------TQKSDPSCPICLR 265 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVL-PCGHVFHaeCLeqWL~k------~~~~d~tCPLCRs 265 (379)
.....|++|.+++.. +..-|.-- .|.--||..|+.--... .......||.|.+
T Consensus 6 ~~~~~C~~C~~p~~~-------------~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~~ 65 (65)
T 2vpb_A 6 DPVYPCGICTNEVND-------------DQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMA 65 (65)
T ss_dssp ---CBCTTTCSBCCT-------------TSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHHC
T ss_pred CCcCcCccCCCccCC-------------CCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCccC
Confidence 355679999999862 22223333 78888999999544321 1111367998863
No 130
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=33.20 E-value=20 Score=39.87 Aligned_cols=49 Identities=12% Similarity=0.068 Sum_probs=39.2
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCC-CHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCR-HVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCG-HVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
-+...|+|-++.+. | -.+++.| ++|-..+|++|+... .+||+=|..+..
T Consensus 889 P~~F~cPIs~~lM~--------------D---PVilpsG~~TydR~~I~~wl~~~----~tdP~Tr~~L~~ 938 (968)
T 3m62_A 889 PDEFLDPLMYTIMK--------------D---PVILPASKMNIDRSTIKAHLLSD----STDPFNRMPLKL 938 (968)
T ss_dssp CGGGBCTTTCSBCS--------------S---EEECTTTCCEEEHHHHHHHHTTC----CBCTTTCCBCCG
T ss_pred cHHhCCcchhhHHh--------------C---CeEcCCCCEEECHHHHHHHHhcC----CCCCCCCCCCCc
Confidence 36788999998876 2 2367998 689999999999763 699998888763
No 131
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=32.56 E-value=5.8 Score=29.69 Aligned_cols=28 Identities=29% Similarity=0.567 Sum_probs=19.9
Q ss_pred CC-CHhhHHHHHhhccCCCCCCCCCcccccc
Q 016977 237 CR-HVFHAECLEQTTPKTQKSDPSCPICLRL 266 (379)
Q Consensus 237 CG-HVFHaeCLeqWL~k~~~~d~tCPLCRs~ 266 (379)
|. .-||..|+.- .........||.|+..
T Consensus 32 C~~~WfH~~Cvgl--~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 32 CPIEWFHFSCVSL--TYKPKGKWYCPKCRGD 60 (62)
T ss_dssp CSSCEEETGGGTC--SSCCSSCCCCHHHHTC
T ss_pred CCcccEecccCCc--CcCCCCCEECcCcccC
Confidence 65 7999999983 3322335789999763
No 132
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=29.52 E-value=6.2 Score=29.61 Aligned_cols=31 Identities=16% Similarity=0.318 Sum_probs=19.3
Q ss_pred cCCCHhhHHHHHhhccCCC----CCCCCCcccccc
Q 016977 236 SCRHVFHAECLEQTTPKTQ----KSDPSCPICLRL 266 (379)
Q Consensus 236 PCGHVFHaeCLeqWL~k~~----~~d~tCPLCRs~ 266 (379)
.|.--||..|+.--..... .....||.||..
T Consensus 31 ~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~~ 65 (68)
T 2rsd_A 31 RCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRLS 65 (68)
T ss_dssp TTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHHH
T ss_pred CCCCeEchhhCCCCcccccccCCCCcEECcCccCc
Confidence 3888899999853221111 013789999853
No 133
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.43 E-value=14 Score=27.81 Aligned_cols=41 Identities=24% Similarity=0.473 Sum_probs=27.3
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
.....|+.|.+.+. +.+.+ ..=+.+||.+|+ .|-.|...+.
T Consensus 13 ~~~~~C~~C~~~I~--------------~~e~v--~a~~~~wH~~CF------------~C~~C~~~L~ 53 (82)
T 2co8_A 13 GAGDLCALCGEHLY--------------VLERL--CVNGHFFHRSCF------------RCHTCEATLW 53 (82)
T ss_dssp CSSCBCSSSCCBCC--------------TTTBC--CBTTBCCBTTTC------------BCSSSCCBCC
T ss_pred CCCCCCcccCCCcc--------------cceEE--EECCCeeCCCcC------------EEcCCCCCcC
Confidence 46678999999875 12222 245788998873 4667776665
No 134
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=26.56 E-value=12 Score=25.50 Aligned_cols=14 Identities=36% Similarity=0.733 Sum_probs=11.6
Q ss_pred CCCccccccccchh
Q 016977 200 SDTFKCGLCERFLS 213 (379)
Q Consensus 200 ~~~~~CaICle~Ls 213 (379)
.....|+||+..|.
T Consensus 3 ~EGFiCP~C~~~l~ 16 (34)
T 3mjh_B 3 SEGFICPQCMKSLG 16 (34)
T ss_dssp SEEEECTTTCCEES
T ss_pred CcccCCcHHHHHcC
Confidence 35678999999987
No 135
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=24.04 E-value=11 Score=27.70 Aligned_cols=38 Identities=26% Similarity=0.506 Sum_probs=24.3
Q ss_pred cccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 204 KCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 204 ~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
.|+.|.+.+.. ... +..-+..||.+|+ .|-.|...+..
T Consensus 2 ~C~~C~~~I~~--------------~~~--v~a~~~~~H~~CF------------~C~~C~~~L~~ 39 (76)
T 1iml_A 2 KCPKCDKEVYF--------------AER--VTSLGKDWHRPCL------------KCEKCGKTLTS 39 (76)
T ss_dssp BCTTTSSBCCG--------------GGE--EEETTEEEETTTC------------BCTTTCCBCCT
T ss_pred cCCCCCCEEEC--------------ceE--EEECCccccCCCC------------CccccCccCCC
Confidence 58888887651 112 2334888898763 57778877763
No 136
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.67 E-value=17 Score=27.43 Aligned_cols=41 Identities=17% Similarity=0.489 Sum_probs=27.5
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 268 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~ 268 (379)
.....|+-|.+.+. +...+ ..=+..||.+|+ .|-.|...+.
T Consensus 13 ~~~~~C~~C~~~I~--------------~~~~v--~a~~~~wH~~CF------------~C~~C~~~L~ 53 (80)
T 2dj7_A 13 RGPSHCAGCKEEIK--------------HGQSL--LALDKQWHVSCF------------KCQTCSVILT 53 (80)
T ss_dssp SSCSCCTTTCCCCS--------------SSCCE--EETTEEECTTTC------------BCSSSCCBCS
T ss_pred CCCCCCcCcCCeeC--------------CCeEE--EECCcccccccC------------CcCcCCCCcC
Confidence 45678999998876 22222 344778888773 5777877765
No 137
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=21.08 E-value=12 Score=26.51 Aligned_cols=30 Identities=17% Similarity=0.370 Sum_probs=20.9
Q ss_pred ecCCCHhhHHHHHhhccCCCCCCCCCccccc
Q 016977 235 LSCRHVFHAECLEQTTPKTQKSDPSCPICLR 265 (379)
Q Consensus 235 LPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs 265 (379)
-.|.--||..|+.--.... .....||.|+.
T Consensus 22 d~C~~W~H~~Cvgi~~~~~-~~~~~C~~C~~ 51 (52)
T 3o7a_A 22 NECHTWIHLSCAKIRKSNV-PEVFVCQKCRD 51 (52)
T ss_dssp TTTCCEEETTTTTCCGGGC-CSSCCCHHHHT
T ss_pred CCCCccccccccCCCcccC-CCcEECcCCCC
Confidence 3688899999997544321 23479999975
No 138
>3u5e_g 60S ribosomal protein L34-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_g 4b6a_g 3izc_i 3izs_i
Probab=20.54 E-value=84 Score=26.96 Aligned_cols=46 Identities=20% Similarity=0.293 Sum_probs=30.9
Q ss_pred CCCCCcccccccccCCCCchhhhhhhccCCcccccccCCCCCCCCCCCCCccc
Q 016977 256 SDPSCPICLRLQEENSPDQQVFSRLKNSFPRLRQSCDNGQSRPWGCPQAGGCV 308 (379)
Q Consensus 256 ~d~tCPLCRs~~~~~~~~q~~~~~~r~~~p~l~~~~~~G~sr~w~~a~ag~~v 308 (379)
..+.|+.|...+.......|... + + .+.+..-.+|++|+...+.||
T Consensus 40 ~~pkCg~Cg~~L~GI~~~RP~e~--~----r-lsK~~KtvsRaYGG~lC~~CV 85 (121)
T 3u5e_g 40 TRPKCGDCGSALQGISTLRPRQY--A----T-VSKTHKTVSRAYGGSRCANCV 85 (121)
T ss_dssp CCCBCTTTCCBCTTCCCCCGGGG--G----S-SCGGGSCCSSTTTTTSCSHHH
T ss_pred CCCCCCCCCCccCCccCCcHHHH--H----h-cccCCCCcccCCcccchHHHH
Confidence 34679999998864333333221 1 1 155667789999999989998
No 139
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=20.46 E-value=42 Score=25.39 Aligned_cols=41 Identities=22% Similarity=0.367 Sum_probs=28.6
Q ss_pred CCCccccccccchhccCCCcccccccCCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccccccc
Q 016977 200 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 269 (379)
Q Consensus 200 ~~~~~CaICle~LsqrsP~ss~~iv~~gD~~vVaVLPCGHVFHaeCLeqWL~k~~~~d~tCPLCRs~~~~ 269 (379)
.....|.-|.+.+. + .. +..-+.+||.+|+ .|-.|...+..
T Consensus 23 ~~~~~C~~C~~~I~--------------~-~~--~~a~~~~~H~~CF------------~C~~C~~~L~~ 63 (89)
T 1x64_A 23 QRMPLCDKCGSGIV--------------G-AV--VKARDKYRHPECF------------VCADCNLNLKQ 63 (89)
T ss_dssp CSCCBCTTTCCBCC--------------S-CC--EESSSCEECTTTC------------CCSSSCCCTTT
T ss_pred CcCCCcccCCCEec--------------c-cE--EEECCceECccCC------------EecCCCCCCCC
Confidence 45578999999876 2 11 3456789998873 57778877753
Done!