Query 016981
Match_columns 379
No_of_seqs 483 out of 3842
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 04:33:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016981.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016981hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02244 tocopherol O-methyltr 100.0 4.5E-36 9.7E-41 283.0 33.1 274 90-365 52-325 (340)
2 COG2226 UbiE Methylase involve 100.0 7.1E-27 1.5E-31 205.6 20.1 205 89-322 10-228 (238)
3 PF02353 CMAS: Mycolic acid cy 100.0 2.7E-27 5.8E-32 215.2 18.0 221 95-332 6-231 (273)
4 COG2230 Cfa Cyclopropane fatty 99.9 1.4E-25 3E-30 200.6 23.5 213 94-326 15-231 (283)
5 PF01209 Ubie_methyltran: ubiE 99.9 3.9E-27 8.4E-32 209.6 9.4 163 159-322 48-224 (233)
6 PLN02233 ubiquinone biosynthes 99.9 6E-24 1.3E-28 193.4 21.4 162 159-321 74-251 (261)
7 PTZ00098 phosphoethanolamine N 99.9 1.8E-23 3.9E-28 190.5 18.9 192 104-328 18-212 (263)
8 KOG1540 Ubiquinone biosynthesi 99.9 9.2E-23 2E-27 175.8 18.2 198 89-315 59-278 (296)
9 TIGR02752 MenG_heptapren 2-hep 99.9 4.2E-22 9.1E-27 178.8 20.1 173 143-321 35-221 (231)
10 PLN02396 hexaprenyldihydroxybe 99.9 7.3E-22 1.6E-26 183.3 20.9 159 158-320 131-291 (322)
11 PRK11705 cyclopropane fatty ac 99.9 2.4E-21 5.3E-26 184.9 22.5 211 93-330 110-324 (383)
12 PRK11036 putative S-adenosyl-L 99.9 1.9E-21 4E-26 177.0 17.0 171 140-318 32-207 (255)
13 PLN02336 phosphoethanolamine N 99.9 7.6E-21 1.7E-25 188.3 19.6 168 142-326 255-422 (475)
14 PRK15068 tRNA mo(5)U34 methylt 99.9 4.2E-20 9E-25 172.7 19.6 156 159-322 123-278 (322)
15 COG2227 UbiG 2-polyprenyl-3-me 99.9 3.4E-21 7.5E-26 166.5 11.2 156 158-319 59-216 (243)
16 PRK10258 biotin biosynthesis p 99.9 9.1E-20 2E-24 165.7 21.2 164 138-322 27-190 (251)
17 TIGR00452 methyltransferase, p 99.8 1.5E-19 3.3E-24 167.1 21.0 170 140-322 108-277 (314)
18 PRK00216 ubiE ubiquinone/menaq 99.8 1.8E-19 4E-24 162.3 21.1 164 159-323 52-230 (239)
19 PRK05785 hypothetical protein; 99.8 1.5E-19 3.2E-24 161.0 19.4 152 159-322 52-215 (226)
20 PRK14103 trans-aconitate 2-met 99.8 6.4E-20 1.4E-24 167.0 17.4 158 140-316 16-182 (255)
21 smart00828 PKS_MT Methyltransf 99.8 6.2E-20 1.3E-24 163.9 16.4 150 160-325 1-151 (224)
22 PLN02490 MPBQ/MSBQ methyltrans 99.8 3.5E-19 7.6E-24 165.9 19.1 145 158-320 113-258 (340)
23 PRK11873 arsM arsenite S-adeno 99.8 1.8E-18 4E-23 159.0 21.5 153 158-319 77-231 (272)
24 TIGR01934 MenG_MenH_UbiE ubiqu 99.8 1.3E-18 2.9E-23 155.0 19.8 162 158-322 39-214 (223)
25 PRK15451 tRNA cmo(5)U34 methyl 99.8 7.7E-19 1.7E-23 158.9 17.5 154 159-314 57-226 (247)
26 PF13489 Methyltransf_23: Meth 99.8 6.6E-20 1.4E-24 154.8 9.6 136 158-315 22-160 (161)
27 PRK08317 hypothetical protein; 99.8 5.1E-18 1.1E-22 152.8 21.4 173 143-325 9-183 (241)
28 PF13847 Methyltransf_31: Meth 99.8 1.9E-19 4.1E-24 150.8 10.9 106 158-265 3-112 (152)
29 TIGR00740 methyltransferase, p 99.8 1.1E-18 2.4E-23 157.3 15.7 155 159-315 54-224 (239)
30 PF08241 Methyltransf_11: Meth 99.8 2.1E-19 4.6E-24 137.6 9.2 95 163-261 1-95 (95)
31 PRK11207 tellurite resistance 99.8 3.3E-18 7.1E-23 149.4 17.8 137 159-317 31-169 (197)
32 KOG1270 Methyltransferases [Co 99.8 1.8E-19 3.8E-24 156.8 9.0 152 159-317 90-248 (282)
33 PF12847 Methyltransf_18: Meth 99.8 1E-18 2.2E-23 138.5 10.8 105 158-263 1-111 (112)
34 TIGR02716 C20_methyl_CrtF C-20 99.8 1.9E-17 4.2E-22 154.7 20.3 164 143-317 139-305 (306)
35 TIGR00477 tehB tellurite resis 99.8 1.3E-17 2.7E-22 145.4 16.0 136 159-317 31-168 (195)
36 PRK01683 trans-aconitate 2-met 99.8 1.9E-17 4.2E-22 151.0 17.7 157 140-313 18-182 (258)
37 PF08003 Methyltransf_9: Prote 99.8 1.2E-17 2.7E-22 149.6 15.4 157 158-322 115-271 (315)
38 KOG4300 Predicted methyltransf 99.8 6.2E-18 1.3E-22 141.5 10.8 158 159-322 77-236 (252)
39 TIGR02072 BioC biotin biosynth 99.7 1.4E-16 3E-21 143.5 18.5 141 159-318 35-176 (240)
40 PRK07580 Mg-protoporphyrin IX 99.7 4.1E-16 8.8E-21 139.8 20.2 204 93-320 7-216 (230)
41 PRK00107 gidB 16S rRNA methylt 99.7 5.6E-16 1.2E-20 133.3 20.1 127 159-322 46-173 (187)
42 TIGR02021 BchM-ChlM magnesium 99.7 2.3E-16 4.9E-21 140.4 18.3 164 140-320 40-208 (219)
43 PLN02585 magnesium protoporphy 99.7 2.1E-15 4.5E-20 139.8 23.7 198 93-318 87-299 (315)
44 PRK05134 bifunctional 3-demeth 99.7 8.5E-16 1.8E-20 138.0 19.8 156 158-319 48-206 (233)
45 COG2264 PrmA Ribosomal protein 99.7 9.2E-18 2E-22 151.7 6.7 139 139-317 149-287 (300)
46 PRK12335 tellurite resistance 99.7 2.3E-16 5E-21 145.9 16.2 136 159-317 121-258 (287)
47 TIGR01983 UbiG ubiquinone bios 99.7 8.6E-16 1.9E-20 137.1 17.5 152 158-319 45-204 (224)
48 COG4106 Tam Trans-aconitate me 99.7 3.3E-16 7.2E-21 132.3 13.7 155 137-312 14-180 (257)
49 TIGR00138 gidB 16S rRNA methyl 99.7 1.9E-15 4.1E-20 129.8 17.8 99 159-263 43-142 (181)
50 PRK08287 cobalt-precorrin-6Y C 99.7 3.1E-15 6.8E-20 129.6 18.2 125 159-319 32-157 (187)
51 TIGR00537 hemK_rel_arch HemK-r 99.7 5.4E-15 1.2E-19 127.3 18.8 131 159-324 20-171 (179)
52 PF13649 Methyltransf_25: Meth 99.7 1E-16 2.2E-21 124.6 7.2 94 162-257 1-101 (101)
53 PF08242 Methyltransf_12: Meth 99.7 1.5E-17 3.4E-22 128.7 2.4 96 163-259 1-99 (99)
54 TIGR03587 Pse_Me-ase pseudamin 99.7 1.5E-15 3.2E-20 133.0 14.8 114 137-266 29-145 (204)
55 PLN02232 ubiquinone biosynthes 99.7 4.8E-16 1E-20 131.0 11.1 136 185-321 1-150 (160)
56 TIGR03840 TMPT_Se_Te thiopurin 99.6 1.4E-14 3E-19 127.5 18.7 141 159-320 35-189 (213)
57 PRK06202 hypothetical protein; 99.6 2.1E-15 4.6E-20 135.3 13.5 146 158-316 60-220 (232)
58 PRK13944 protein-L-isoaspartat 99.6 3.8E-15 8.3E-20 130.9 14.8 112 141-263 60-173 (205)
59 PLN02336 phosphoethanolamine N 99.6 2.4E-15 5.1E-20 149.2 14.9 140 159-317 38-181 (475)
60 TIGR02469 CbiT precorrin-6Y C5 99.6 9E-15 1.9E-19 117.7 15.5 112 143-263 9-122 (124)
61 PRK00121 trmB tRNA (guanine-N( 99.6 2.2E-15 4.8E-20 132.0 12.5 104 159-263 41-156 (202)
62 TIGR02081 metW methionine bios 99.6 9E-15 1.9E-19 127.5 16.3 145 159-322 14-171 (194)
63 PF06325 PrmA: Ribosomal prote 99.6 6.9E-16 1.5E-20 141.1 9.5 138 136-317 145-282 (295)
64 PF03848 TehB: Tellurite resis 99.6 5.8E-15 1.3E-19 126.2 13.8 104 159-266 31-136 (192)
65 PRK06922 hypothetical protein; 99.6 5.5E-15 1.2E-19 145.9 14.7 106 159-266 419-540 (677)
66 PRK00377 cbiT cobalt-precorrin 99.6 3E-14 6.5E-19 124.6 17.8 128 159-320 41-171 (198)
67 smart00138 MeTrc Methyltransfe 99.6 5.2E-15 1.1E-19 134.8 13.0 105 159-263 100-242 (264)
68 PRK04266 fibrillarin; Provisio 99.6 2.6E-14 5.6E-19 126.7 16.8 138 148-320 67-212 (226)
69 PF05401 NodS: Nodulation prot 99.6 3.9E-15 8.5E-20 125.6 10.9 131 159-316 44-177 (201)
70 KOG1271 Methyltransferases [Ge 99.6 1.7E-14 3.8E-19 118.6 13.6 150 136-317 46-204 (227)
71 PRK13255 thiopurine S-methyltr 99.6 4.1E-14 8.8E-19 125.0 16.9 141 159-320 38-192 (218)
72 COG4976 Predicted methyltransf 99.6 3.4E-15 7.3E-20 127.2 9.4 156 140-322 112-269 (287)
73 PRK00517 prmA ribosomal protei 99.6 1.5E-14 3.2E-19 131.1 14.1 120 158-318 119-238 (250)
74 TIGR00406 prmA ribosomal prote 99.6 2.7E-14 5.9E-19 131.9 16.0 101 159-264 160-260 (288)
75 PF07021 MetW: Methionine bios 99.6 3.4E-14 7.4E-19 119.8 14.8 148 158-323 13-172 (193)
76 PRK14967 putative methyltransf 99.6 1.6E-13 3.4E-18 122.3 19.7 146 141-324 24-190 (223)
77 PRK11088 rrmA 23S rRNA methylt 99.6 3.7E-14 8E-19 130.2 15.8 94 159-265 86-183 (272)
78 PRK13942 protein-L-isoaspartat 99.6 3.9E-14 8.5E-19 125.0 15.3 112 140-263 63-176 (212)
79 PLN03075 nicotianamine synthas 99.6 7.2E-14 1.6E-18 127.0 16.9 104 159-263 124-233 (296)
80 TIGR03534 RF_mod_PrmC protein- 99.6 2.5E-13 5.3E-18 123.4 20.5 139 140-317 75-240 (251)
81 PRK14968 putative methyltransf 99.6 9.5E-14 2.1E-18 120.3 16.7 127 159-317 24-172 (188)
82 TIGR00080 pimt protein-L-isoas 99.6 6.4E-14 1.4E-18 124.1 15.5 111 141-263 65-177 (215)
83 TIGR00091 tRNA (guanine-N(7)-) 99.6 2.4E-14 5.2E-19 124.7 11.5 104 159-263 17-132 (194)
84 PF05175 MTS: Methyltransferas 99.6 1.8E-13 4E-18 116.6 15.6 103 159-263 32-140 (170)
85 TIGR01177 conserved hypothetic 99.5 2.2E-13 4.7E-18 128.5 16.9 103 159-263 183-294 (329)
86 KOG2361 Predicted methyltransf 99.5 2.3E-14 4.9E-19 123.4 8.1 152 160-317 73-236 (264)
87 TIGR03438 probable methyltrans 99.5 3.2E-13 6.8E-18 125.7 15.1 146 102-263 22-177 (301)
88 PF13659 Methyltransf_26: Meth 99.5 9.5E-14 2.1E-18 110.7 9.7 105 159-263 1-115 (117)
89 PTZ00146 fibrillarin; Provisio 99.5 9.8E-13 2.1E-17 119.2 17.2 133 157-319 131-272 (293)
90 TIGR03533 L3_gln_methyl protei 99.5 8.8E-13 1.9E-17 121.4 17.2 104 159-263 122-251 (284)
91 COG2242 CobL Precorrin-6B meth 99.5 2E-12 4.4E-17 108.4 17.5 133 145-317 26-160 (187)
92 TIGR00536 hemK_fam HemK family 99.5 2.6E-12 5.6E-17 118.6 20.2 104 159-263 115-244 (284)
93 PRK11188 rrmJ 23S rRNA methylt 99.5 1.8E-13 3.9E-18 120.4 11.4 109 141-265 38-167 (209)
94 PRK15001 SAM-dependent 23S rib 99.5 3.7E-13 8.1E-18 127.4 14.0 104 159-263 229-340 (378)
95 PRK14121 tRNA (guanine-N(7)-)- 99.5 5.2E-13 1.1E-17 125.9 14.5 104 159-263 123-235 (390)
96 PRK00312 pcm protein-L-isoaspa 99.5 1.1E-12 2.4E-17 116.1 15.2 111 141-264 66-176 (212)
97 PRK09489 rsmC 16S ribosomal RN 99.5 7E-13 1.5E-17 124.8 13.7 101 159-263 197-303 (342)
98 COG2519 GCD14 tRNA(1-methylade 99.5 1.7E-12 3.6E-17 113.7 14.7 111 143-264 84-196 (256)
99 PRK07402 precorrin-6B methylas 99.5 2.2E-12 4.7E-17 112.7 15.6 110 145-264 32-143 (196)
100 PRK14966 unknown domain/N5-glu 99.5 4.6E-12 1E-16 120.2 18.8 125 159-316 252-403 (423)
101 PRK11805 N5-glutamine S-adenos 99.5 4.9E-12 1.1E-16 117.6 18.4 103 159-262 134-262 (307)
102 PRK09328 N5-glutamine S-adenos 99.5 5.6E-12 1.2E-16 116.1 18.7 125 159-316 109-260 (275)
103 COG4123 Predicted O-methyltran 99.4 2.9E-12 6.3E-17 113.2 15.4 132 159-321 45-197 (248)
104 KOG1541 Predicted protein carb 99.4 1.6E-12 3.5E-17 110.3 12.5 118 137-264 32-161 (270)
105 COG2518 Pcm Protein-L-isoaspar 99.4 2.8E-12 6E-17 110.0 14.0 111 140-263 59-169 (209)
106 PHA03411 putative methyltransf 99.4 2.5E-12 5.5E-17 115.2 14.2 123 159-312 65-208 (279)
107 PF08704 GCD14: tRNA methyltra 99.4 3E-12 6.6E-17 114.1 13.5 139 140-318 27-171 (247)
108 PRK13256 thiopurine S-methyltr 99.4 7.3E-12 1.6E-16 110.2 15.7 107 159-266 44-166 (226)
109 PF05724 TPMT: Thiopurine S-me 99.4 2.4E-12 5.2E-17 113.5 11.6 152 141-318 25-190 (218)
110 PF00891 Methyltransf_2: O-met 99.4 8.1E-12 1.8E-16 112.7 15.0 146 143-307 90-241 (241)
111 PRK01544 bifunctional N5-gluta 99.4 1E-11 2.2E-16 123.0 16.8 126 159-316 139-291 (506)
112 PRK13943 protein-L-isoaspartat 99.4 5.9E-12 1.3E-16 117.1 14.0 111 141-263 68-180 (322)
113 PF01135 PCMT: Protein-L-isoas 99.4 3.3E-12 7.2E-17 111.6 11.6 113 139-263 58-172 (209)
114 PF05891 Methyltransf_PK: AdoM 99.4 2.9E-12 6.2E-17 110.3 9.6 144 158-317 55-200 (218)
115 PF06080 DUF938: Protein of un 99.3 3.4E-11 7.3E-16 103.2 14.9 155 161-319 28-193 (204)
116 cd02440 AdoMet_MTases S-adenos 99.3 1E-11 2.2E-16 95.7 10.7 101 161-262 1-103 (107)
117 KOG1269 SAM-dependent methyltr 99.3 2.6E-12 5.6E-17 120.7 8.7 217 92-321 54-270 (364)
118 PF12147 Methyltransf_20: Puta 99.3 5.4E-11 1.2E-15 106.0 16.2 184 122-316 103-296 (311)
119 TIGR03704 PrmC_rel_meth putati 99.3 9.1E-11 2E-15 106.1 18.0 101 159-263 87-216 (251)
120 COG2890 HemK Methylase of poly 99.3 1.2E-10 2.5E-15 106.9 18.1 123 161-317 113-262 (280)
121 TIGR00563 rsmB ribosomal RNA s 99.3 2.8E-11 6.1E-16 118.0 14.6 108 158-265 238-370 (426)
122 PRK14901 16S rRNA methyltransf 99.3 2.9E-11 6.3E-16 118.2 14.6 106 158-264 252-385 (434)
123 KOG3010 Methyltransferase [Gen 99.3 7.5E-12 1.6E-16 108.1 8.9 102 160-263 35-137 (261)
124 PRK04457 spermidine synthase; 99.3 3.1E-11 6.7E-16 109.8 12.9 106 159-264 67-178 (262)
125 PLN02781 Probable caffeoyl-CoA 99.3 5.5E-11 1.2E-15 106.4 13.2 103 159-264 69-179 (234)
126 PRK10901 16S rRNA methyltransf 99.3 7.8E-11 1.7E-15 114.9 15.3 105 158-264 244-373 (427)
127 PF05219 DREV: DREV methyltran 99.3 5.3E-11 1.1E-15 104.8 12.5 96 158-264 94-189 (265)
128 TIGR00446 nop2p NOL1/NOP2/sun 99.3 5.4E-11 1.2E-15 108.6 13.0 106 158-264 71-200 (264)
129 PRK14904 16S rRNA methyltransf 99.3 8.7E-11 1.9E-15 115.2 15.0 106 158-265 250-379 (445)
130 PRK13168 rumA 23S rRNA m(5)U19 99.3 2.6E-10 5.6E-15 111.9 18.3 116 137-263 281-400 (443)
131 KOG2940 Predicted methyltransf 99.3 1E-11 2.2E-16 106.0 7.2 150 159-317 73-226 (325)
132 PRK14903 16S rRNA methyltransf 99.3 7.3E-11 1.6E-15 114.9 14.2 107 158-265 237-368 (431)
133 COG2813 RsmC 16S RNA G1207 met 99.3 9.8E-11 2.1E-15 105.7 13.9 103 159-264 159-267 (300)
134 smart00650 rADc Ribosomal RNA 99.3 1E-10 2.2E-15 99.6 13.1 109 143-263 3-113 (169)
135 PF05148 Methyltransf_8: Hypot 99.3 4.3E-11 9.3E-16 102.0 10.5 126 141-317 59-184 (219)
136 TIGR00438 rrmJ cell division p 99.3 1.1E-10 2.4E-15 101.2 13.1 94 158-263 32-146 (188)
137 PRK11783 rlmL 23S rRNA m(2)G24 99.2 8.6E-11 1.9E-15 121.2 14.2 105 159-263 539-656 (702)
138 PRK00811 spermidine synthase; 99.2 6.6E-11 1.4E-15 109.0 11.7 105 159-263 77-191 (283)
139 PRK14902 16S rRNA methyltransf 99.2 1.9E-10 4.1E-15 113.0 14.4 104 158-263 250-379 (444)
140 PF03291 Pox_MCEL: mRNA cappin 99.2 9.9E-11 2.1E-15 109.4 11.3 107 158-264 62-187 (331)
141 PRK15128 23S rRNA m(5)C1962 me 99.2 1.6E-10 3.4E-15 110.9 10.8 104 159-263 221-339 (396)
142 PF02390 Methyltransf_4: Putat 99.2 2.8E-10 6.2E-15 98.7 11.3 103 160-263 19-133 (195)
143 PLN02672 methionine S-methyltr 99.2 8.6E-10 1.9E-14 116.1 16.7 104 159-262 119-277 (1082)
144 PRK01581 speE spermidine synth 99.2 5E-10 1.1E-14 104.4 12.9 105 159-263 151-268 (374)
145 KOG2899 Predicted methyltransf 99.2 5.9E-10 1.3E-14 96.2 12.4 148 158-314 58-253 (288)
146 KOG3045 Predicted RNA methylas 99.1 3E-10 6.6E-15 98.8 10.3 122 142-316 168-289 (325)
147 PF01596 Methyltransf_3: O-met 99.1 4.3E-10 9.3E-15 98.1 10.8 117 138-265 33-157 (205)
148 PRK03612 spermidine synthase; 99.1 5.9E-10 1.3E-14 111.1 13.2 105 159-263 298-415 (521)
149 KOG1975 mRNA cap methyltransfe 99.1 4.5E-10 9.9E-15 100.8 10.6 106 158-263 117-237 (389)
150 COG2263 Predicted RNA methylas 99.1 6.2E-09 1.3E-13 87.2 16.7 127 159-325 46-175 (198)
151 COG4122 Predicted O-methyltran 99.1 1.6E-09 3.6E-14 94.4 13.9 107 159-268 60-171 (219)
152 PLN02476 O-methyltransferase 99.1 1.2E-09 2.7E-14 99.0 13.5 104 159-265 119-230 (278)
153 PF01739 CheR: CheR methyltran 99.1 7E-10 1.5E-14 96.0 10.9 106 158-263 31-175 (196)
154 PLN02366 spermidine synthase 99.1 9.3E-10 2E-14 102.0 12.2 105 159-263 92-206 (308)
155 PRK11727 23S rRNA mA1618 methy 99.1 9.2E-09 2E-13 95.5 18.4 151 158-321 114-295 (321)
156 PRK10909 rsmD 16S rRNA m(2)G96 99.1 3.7E-09 8E-14 91.9 14.8 103 159-263 54-159 (199)
157 PF10294 Methyltransf_16: Puta 99.1 6.2E-10 1.4E-14 95.0 9.8 105 158-263 45-156 (173)
158 PRK03522 rumB 23S rRNA methylu 99.1 1.7E-09 3.6E-14 101.4 13.5 100 159-263 174-274 (315)
159 TIGR00479 rumA 23S rRNA (uraci 99.1 3.7E-09 8E-14 103.6 16.4 116 137-262 276-395 (431)
160 TIGR00417 speE spermidine synt 99.1 1.3E-09 2.8E-14 99.9 12.2 104 159-262 73-185 (270)
161 PHA03412 putative methyltransf 99.0 1.7E-09 3.7E-14 95.0 10.3 93 159-258 50-158 (241)
162 KOG3178 Hydroxyindole-O-methyl 99.0 1.7E-08 3.8E-13 92.6 16.8 147 159-317 178-329 (342)
163 KOG1499 Protein arginine N-met 99.0 1.2E-09 2.6E-14 100.0 8.8 102 158-260 60-164 (346)
164 PLN02589 caffeoyl-CoA O-methyl 99.0 4.3E-09 9.4E-14 94.3 11.9 115 139-264 68-191 (247)
165 PRK10611 chemotaxis methyltran 99.0 1.1E-09 2.4E-14 100.1 8.0 105 159-263 116-262 (287)
166 COG2521 Predicted archaeal met 99.0 1.1E-09 2.3E-14 94.2 7.4 136 158-317 134-276 (287)
167 COG0220 Predicted S-adenosylme 99.0 4.1E-09 8.8E-14 93.0 11.2 103 160-263 50-164 (227)
168 PF07942 N2227: N2227-like pro 99.0 9E-08 2E-12 86.3 19.3 165 137-318 36-242 (270)
169 KOG2904 Predicted methyltransf 98.9 2.4E-08 5.1E-13 88.0 13.7 106 159-264 149-286 (328)
170 COG1041 Predicted DNA modifica 98.9 1.8E-08 4E-13 92.8 13.3 104 158-263 197-310 (347)
171 PTZ00338 dimethyladenosine tra 98.9 8.4E-09 1.8E-13 95.2 11.1 93 140-241 23-115 (294)
172 PRK00274 ksgA 16S ribosomal RN 98.9 6.4E-09 1.4E-13 95.4 9.8 85 141-235 30-114 (272)
173 PF05185 PRMT5: PRMT5 arginine 98.9 2.1E-08 4.6E-13 97.5 13.8 100 159-260 187-294 (448)
174 PRK14896 ksgA 16S ribosomal RN 98.9 1.1E-08 2.3E-13 93.2 11.0 87 140-237 16-102 (258)
175 COG3963 Phospholipid N-methylt 98.9 3.2E-08 7E-13 80.8 11.7 114 141-265 36-158 (194)
176 TIGR00095 RNA methyltransferas 98.9 2.4E-08 5.2E-13 86.3 11.5 104 159-263 50-159 (189)
177 PF01170 UPF0020: Putative RNA 98.9 3.7E-08 8E-13 84.5 12.5 111 141-256 16-144 (179)
178 COG1352 CheR Methylase of chem 98.9 2.1E-08 4.5E-13 90.6 11.4 105 159-263 97-241 (268)
179 TIGR02085 meth_trns_rumB 23S r 98.9 3.4E-08 7.4E-13 94.7 13.6 100 159-263 234-334 (374)
180 PF11968 DUF3321: Putative met 98.9 3.1E-08 6.7E-13 85.2 11.4 121 158-319 51-182 (219)
181 TIGR00755 ksgA dimethyladenosi 98.8 5.1E-08 1.1E-12 88.6 12.9 103 140-258 16-121 (253)
182 KOG1500 Protein arginine N-met 98.8 7.1E-08 1.5E-12 87.2 13.3 102 158-261 177-280 (517)
183 PF03141 Methyltransf_29: Puta 98.8 4.6E-09 1E-13 100.4 4.9 100 159-265 118-221 (506)
184 KOG2915 tRNA(1-methyladenosine 98.8 2.1E-07 4.6E-12 82.0 14.7 112 142-263 94-210 (314)
185 PRK01544 bifunctional N5-gluta 98.8 9.4E-08 2E-12 95.0 13.5 126 137-263 324-462 (506)
186 KOG1661 Protein-L-isoaspartate 98.7 6.5E-08 1.4E-12 82.1 9.7 100 158-263 82-193 (237)
187 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.7 7.3E-08 1.6E-12 86.4 10.4 145 158-317 56-238 (256)
188 KOG3191 Predicted N6-DNA-methy 98.7 1.6E-06 3.4E-11 72.1 17.3 125 159-316 44-191 (209)
189 PF02475 Met_10: Met-10+ like- 98.7 6.4E-08 1.4E-12 83.9 9.5 98 158-260 101-199 (200)
190 PRK04338 N(2),N(2)-dimethylgua 98.7 1.2E-07 2.7E-12 90.6 12.0 100 159-263 58-158 (382)
191 TIGR00478 tly hemolysin TlyA f 98.7 1.9E-07 4.1E-12 82.7 11.9 102 141-262 62-170 (228)
192 PLN02823 spermine synthase 98.7 1.3E-07 2.7E-12 88.8 10.9 103 159-262 104-219 (336)
193 PRK05031 tRNA (uracil-5-)-meth 98.7 8.3E-07 1.8E-11 84.7 16.0 114 137-263 191-320 (362)
194 PRK11933 yebU rRNA (cytosine-C 98.7 3.4E-07 7.3E-12 89.6 13.6 106 158-264 113-243 (470)
195 TIGR03439 methyl_EasF probable 98.7 8.3E-07 1.8E-11 82.5 15.5 146 101-263 34-197 (319)
196 PF02527 GidB: rRNA small subu 98.7 4.4E-07 9.5E-12 77.7 12.6 127 161-321 51-178 (184)
197 TIGR02143 trmA_only tRNA (urac 98.7 9.5E-07 2.1E-11 84.0 16.0 114 137-263 182-311 (353)
198 KOG0820 Ribosomal RNA adenine 98.7 1.6E-07 3.5E-12 82.8 9.8 87 140-234 45-131 (315)
199 PRK04148 hypothetical protein; 98.6 7.1E-07 1.5E-11 71.7 12.0 95 159-267 17-113 (134)
200 COG1092 Predicted SAM-dependen 98.6 2.1E-07 4.6E-12 88.3 10.5 104 159-263 218-336 (393)
201 KOG3420 Predicted RNA methylas 98.6 1.2E-07 2.6E-12 75.6 7.1 78 159-238 49-126 (185)
202 KOG1331 Predicted methyltransf 98.6 1.2E-07 2.5E-12 84.6 6.7 110 141-268 35-148 (293)
203 PF10672 Methyltrans_SAM: S-ad 98.6 2.9E-07 6.2E-12 84.1 8.8 105 159-263 124-238 (286)
204 KOG1663 O-methyltransferase [S 98.5 2.1E-06 4.6E-11 74.3 12.8 113 139-263 62-183 (237)
205 COG2265 TrmA SAM-dependent met 98.5 1.1E-06 2.3E-11 85.2 12.2 119 135-263 275-396 (432)
206 PF09243 Rsm22: Mitochondrial 98.5 1.8E-06 3.9E-11 79.1 13.2 119 138-265 18-141 (274)
207 PF03602 Cons_hypoth95: Conser 98.5 3.2E-07 6.9E-12 78.8 7.4 105 159-264 43-154 (183)
208 COG0030 KsgA Dimethyladenosine 98.5 9.2E-07 2E-11 79.1 10.4 90 141-240 18-108 (259)
209 PRK00050 16S rRNA m(4)C1402 me 98.5 4.1E-07 8.9E-12 83.5 8.2 88 141-236 7-100 (296)
210 COG0500 SmtA SAM-dependent met 98.5 2.6E-06 5.7E-11 70.6 12.7 104 162-268 52-160 (257)
211 PF04672 Methyltransf_19: S-ad 98.5 1.6E-06 3.6E-11 77.6 11.7 147 159-315 69-233 (267)
212 COG2520 Predicted methyltransf 98.5 1.4E-06 3E-11 81.2 10.8 106 159-268 189-294 (341)
213 COG0421 SpeE Spermidine syntha 98.5 2E-06 4.4E-11 78.5 11.7 103 159-262 77-189 (282)
214 PF01564 Spermine_synth: Sperm 98.4 6.1E-07 1.3E-11 80.9 7.7 105 159-263 77-191 (246)
215 KOG3987 Uncharacterized conser 98.4 1.4E-07 3.1E-12 79.7 2.6 95 158-263 112-207 (288)
216 PF04816 DUF633: Family of unk 98.4 4.4E-06 9.5E-11 72.9 11.5 123 162-319 1-125 (205)
217 PRK00536 speE spermidine synth 98.4 4.5E-06 9.8E-11 75.3 11.7 96 159-263 73-171 (262)
218 COG0357 GidB Predicted S-adeno 98.4 6.8E-06 1.5E-10 71.7 12.4 132 159-324 68-201 (215)
219 TIGR00308 TRM1 tRNA(guanine-26 98.4 5.1E-06 1.1E-10 79.2 12.6 100 159-263 45-147 (374)
220 PF09445 Methyltransf_15: RNA 98.4 7.9E-07 1.7E-11 74.1 6.2 72 161-233 2-76 (163)
221 PF03059 NAS: Nicotianamine sy 98.4 7.1E-06 1.5E-10 74.4 12.7 168 90-262 55-229 (276)
222 PF08123 DOT1: Histone methyla 98.3 2E-06 4.3E-11 75.1 8.5 116 140-261 29-156 (205)
223 PRK11783 rlmL 23S rRNA m(2)G24 98.3 7.6E-06 1.7E-10 84.8 13.8 119 141-263 177-347 (702)
224 COG0742 N6-adenine-specific me 98.3 7.2E-06 1.6E-10 69.6 10.5 106 158-263 43-154 (187)
225 PF05958 tRNA_U5-meth_tr: tRNA 98.3 3.9E-06 8.4E-11 79.8 10.1 78 135-220 179-256 (352)
226 COG3897 Predicted methyltransf 98.3 4.2E-06 9.2E-11 70.5 8.4 103 155-263 76-179 (218)
227 COG0293 FtsJ 23S rRNA methylas 98.2 9.8E-06 2.1E-10 69.8 10.0 111 139-265 30-161 (205)
228 KOG3201 Uncharacterized conser 98.2 6.2E-07 1.3E-11 72.9 2.3 136 159-323 30-171 (201)
229 PF02384 N6_Mtase: N-6 DNA Met 98.2 1.2E-05 2.7E-10 75.3 10.8 105 159-263 47-183 (311)
230 PLN02668 indole-3-acetate carb 98.2 0.00023 5E-09 67.7 18.6 103 218-320 154-311 (386)
231 KOG2798 Putative trehalase [Ca 98.2 0.00013 2.9E-09 65.9 16.0 175 135-325 128-344 (369)
232 COG0144 Sun tRNA and rRNA cyto 98.1 4.4E-05 9.4E-10 72.6 13.6 106 158-264 156-289 (355)
233 PF13679 Methyltransf_32: Meth 98.1 5.8E-05 1.3E-09 62.1 12.1 99 158-262 25-130 (141)
234 PF01728 FtsJ: FtsJ-like methy 98.1 5.5E-06 1.2E-10 71.3 6.2 110 141-265 8-141 (181)
235 COG4798 Predicted methyltransf 98.1 2.4E-05 5.3E-10 65.8 9.2 156 144-322 39-209 (238)
236 KOG2730 Methylase [General fun 98.1 1.1E-05 2.4E-10 69.2 6.9 98 159-257 95-196 (263)
237 COG0116 Predicted N6-adenine-s 98.1 0.0001 2.2E-09 69.4 13.7 118 141-263 179-344 (381)
238 PF00398 RrnaAD: Ribosomal RNA 98.0 3.6E-05 7.7E-10 70.3 9.8 104 140-255 17-123 (262)
239 KOG1709 Guanidinoacetate methy 98.0 6.7E-05 1.5E-09 64.2 9.6 104 158-263 101-206 (271)
240 PF13578 Methyltransf_24: Meth 97.9 1.7E-06 3.7E-11 67.4 -0.1 99 163-263 1-105 (106)
241 KOG2352 Predicted spermine/spe 97.9 9.9E-05 2.2E-09 71.0 11.3 104 159-264 48-162 (482)
242 PRK11760 putative 23S rRNA C24 97.9 5.7E-05 1.2E-09 70.0 9.1 103 141-256 191-296 (357)
243 COG4076 Predicted RNA methylas 97.9 3.7E-05 8E-10 64.3 6.9 101 159-263 33-135 (252)
244 TIGR02987 met_A_Alw26 type II 97.9 0.00012 2.5E-09 73.8 11.6 77 159-236 32-122 (524)
245 COG4262 Predicted spermidine s 97.9 0.00018 3.8E-09 66.4 11.1 106 158-263 289-407 (508)
246 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.8 0.00012 2.7E-09 67.4 9.8 105 158-263 85-219 (283)
247 PF01269 Fibrillarin: Fibrilla 97.8 0.00036 7.9E-09 60.6 11.6 103 155-263 70-178 (229)
248 KOG2187 tRNA uracil-5-methyltr 97.8 4.1E-05 8.8E-10 73.8 5.8 75 139-220 369-443 (534)
249 COG2384 Predicted SAM-dependen 97.8 0.0012 2.7E-08 57.1 14.2 125 159-317 17-142 (226)
250 TIGR01444 fkbM_fam methyltrans 97.7 0.00012 2.5E-09 60.2 7.7 58 161-219 1-59 (143)
251 PF06962 rRNA_methylase: Putat 97.7 0.0002 4.2E-09 58.0 8.3 81 183-265 1-94 (140)
252 COG1189 Predicted rRNA methyla 97.7 6.8E-05 1.5E-09 65.6 5.9 150 141-317 66-223 (245)
253 PF05971 Methyltransf_10: Prot 97.7 0.00052 1.1E-08 63.0 11.8 81 159-239 103-190 (299)
254 TIGR00006 S-adenosyl-methyltra 97.6 0.00037 7.9E-09 64.3 10.0 90 141-237 8-103 (305)
255 COG1889 NOP1 Fibrillarin-like 97.6 0.0025 5.4E-08 54.4 14.0 103 155-263 73-180 (231)
256 KOG3115 Methyltransferase-like 97.6 0.00025 5.3E-09 60.3 7.6 103 159-263 61-183 (249)
257 PF03492 Methyltransf_7: SAM d 97.6 0.0041 8.8E-08 58.7 16.0 160 158-320 16-255 (334)
258 PRK10742 putative methyltransf 97.4 0.0013 2.9E-08 58.5 9.8 90 143-238 76-176 (250)
259 COG4627 Uncharacterized protei 97.4 4.3E-05 9.3E-10 61.9 0.2 55 210-264 31-87 (185)
260 KOG4589 Cell division protein 97.4 0.0018 4E-08 54.4 9.5 99 157-268 68-189 (232)
261 KOG4058 Uncharacterized conser 97.3 0.0014 3.1E-08 52.7 8.4 119 137-265 56-174 (199)
262 TIGR00027 mthyl_TIGR00027 meth 97.3 0.019 4.2E-07 52.2 16.9 171 136-316 64-248 (260)
263 PF03141 Methyltransf_29: Puta 97.3 0.00031 6.8E-09 67.9 5.3 96 159-263 366-467 (506)
264 KOG1122 tRNA and rRNA cytosine 97.2 0.0039 8.4E-08 59.0 11.1 106 157-264 240-372 (460)
265 PF07091 FmrO: Ribosomal RNA m 97.2 0.0013 2.7E-08 58.4 7.3 79 159-240 106-185 (251)
266 PF04989 CmcI: Cephalosporin h 97.1 0.0012 2.7E-08 57.0 6.5 103 159-264 33-148 (206)
267 KOG2793 Putative N2,N2-dimethy 97.1 0.0072 1.6E-07 54.0 10.9 104 159-263 87-199 (248)
268 KOG0822 Protein kinase inhibit 96.9 0.0066 1.4E-07 59.0 9.4 126 134-263 345-478 (649)
269 COG4301 Uncharacterized conser 96.8 0.043 9.2E-07 48.5 13.3 145 102-263 38-193 (321)
270 COG1064 AdhP Zn-dependent alco 96.8 0.011 2.4E-07 55.2 10.4 95 157-265 165-261 (339)
271 PF01861 DUF43: Protein of unk 96.8 0.15 3.2E-06 45.2 16.5 130 159-317 45-177 (243)
272 PRK09424 pntA NAD(P) transhydr 96.7 0.02 4.3E-07 56.9 12.1 100 157-264 163-286 (509)
273 PF03269 DUF268: Caenorhabditi 96.7 0.011 2.3E-07 48.7 8.1 129 159-317 2-144 (177)
274 PF11599 AviRa: RRNA methyltra 96.7 0.044 9.6E-07 47.4 11.9 120 139-263 37-214 (246)
275 PF02005 TRM: N2,N2-dimethylgu 96.6 0.0082 1.8E-07 57.5 8.4 101 159-263 50-154 (377)
276 PRK01747 mnmC bifunctional tRN 96.6 0.011 2.4E-07 61.4 9.7 103 159-262 58-205 (662)
277 COG0275 Predicted S-adenosylme 96.6 0.017 3.6E-07 52.7 9.4 91 140-237 10-107 (314)
278 KOG1501 Arginine N-methyltrans 96.5 0.0053 1.2E-07 58.2 6.1 74 159-232 67-141 (636)
279 PF01795 Methyltransf_5: MraW 96.5 0.0051 1.1E-07 56.8 5.8 89 141-236 8-103 (310)
280 COG5459 Predicted rRNA methyla 96.3 0.024 5.1E-07 52.5 8.5 107 158-265 113-227 (484)
281 cd08283 FDH_like_1 Glutathione 96.2 0.046 1E-06 52.8 10.8 103 158-264 184-307 (386)
282 COG1867 TRM1 N2,N2-dimethylgua 96.0 0.035 7.7E-07 51.9 8.6 100 159-263 53-154 (380)
283 PF04445 SAM_MT: Putative SAM- 96.0 0.037 7.9E-07 49.1 8.2 91 144-238 64-163 (234)
284 COG0286 HsdM Type I restrictio 95.9 0.14 3.1E-06 51.0 13.0 105 159-263 187-326 (489)
285 COG3129 Predicted SAM-dependen 95.8 0.034 7.4E-07 48.5 6.9 83 157-239 77-166 (292)
286 PRK09880 L-idonate 5-dehydroge 95.7 0.1 2.2E-06 49.4 10.8 97 158-264 169-267 (343)
287 KOG2920 Predicted methyltransf 95.6 0.013 2.9E-07 52.9 3.9 106 158-263 116-234 (282)
288 PHA01634 hypothetical protein 95.6 0.087 1.9E-06 41.6 7.7 47 158-204 28-74 (156)
289 COG3510 CmcI Cephalosporin hyd 95.5 0.11 2.4E-06 44.1 8.7 105 159-269 70-186 (237)
290 KOG1562 Spermidine synthase [A 95.5 0.048 1.1E-06 49.4 6.9 105 159-263 122-236 (337)
291 COG1063 Tdh Threonine dehydrog 95.4 0.17 3.8E-06 48.2 11.2 97 159-268 169-274 (350)
292 PF02636 Methyltransf_28: Puta 95.4 0.043 9.3E-07 49.7 6.6 77 159-240 19-109 (252)
293 PRK13699 putative methylase; P 95.3 0.053 1.1E-06 48.3 6.8 52 211-262 3-71 (227)
294 TIGR00561 pntA NAD(P) transhyd 95.2 0.1 2.3E-06 51.8 9.1 97 158-262 163-283 (511)
295 cd08254 hydroxyacyl_CoA_DH 6-h 95.1 0.35 7.7E-06 45.3 12.4 93 158-264 165-264 (338)
296 KOG0024 Sorbitol dehydrogenase 95.1 0.33 7.2E-06 44.8 11.2 100 158-268 169-278 (354)
297 KOG1253 tRNA methyltransferase 95.0 0.025 5.5E-07 54.7 4.1 102 158-263 109-216 (525)
298 PRK11524 putative methyltransf 94.9 0.11 2.5E-06 47.9 8.0 58 139-203 195-252 (284)
299 KOG1596 Fibrillarin and relate 94.9 0.15 3.2E-06 44.9 8.0 102 156-263 154-261 (317)
300 COG1565 Uncharacterized conser 94.7 0.23 4.9E-06 46.7 9.4 60 140-204 64-132 (370)
301 KOG1227 Putative methyltransfe 94.7 0.025 5.3E-07 51.3 3.0 102 159-265 195-299 (351)
302 KOG2651 rRNA adenine N-6-methy 94.7 0.11 2.3E-06 48.8 7.1 42 159-200 154-195 (476)
303 KOG2198 tRNA cytosine-5-methyl 94.7 0.57 1.2E-05 44.1 11.7 108 157-265 154-298 (375)
304 KOG2918 Carboxymethyl transfer 94.6 0.94 2E-05 41.6 12.7 173 134-320 70-279 (335)
305 COG3315 O-Methyltransferase in 94.6 0.61 1.3E-05 43.3 11.9 174 135-316 74-262 (297)
306 PF01555 N6_N4_Mtase: DNA meth 94.6 0.13 2.8E-06 45.3 7.3 54 139-199 178-231 (231)
307 PF00107 ADH_zinc_N: Zinc-bind 94.6 0.17 3.8E-06 40.3 7.4 86 168-266 1-92 (130)
308 PF02254 TrkA_N: TrkA-N domain 94.5 0.49 1.1E-05 36.9 9.8 84 167-263 4-96 (116)
309 KOG1099 SAM-dependent methyltr 94.5 0.05 1.1E-06 47.4 4.2 94 159-264 42-164 (294)
310 PF07757 AdoMet_MTase: Predict 94.4 0.032 6.9E-07 42.7 2.4 32 158-190 58-89 (112)
311 PRK13699 putative methylase; P 94.3 0.23 4.9E-06 44.3 8.2 58 140-204 151-208 (227)
312 TIGR02822 adh_fam_2 zinc-bindi 94.1 0.81 1.8E-05 43.1 12.0 90 158-264 165-255 (329)
313 cd05188 MDR Medium chain reduc 94.0 0.17 3.7E-06 45.6 7.0 92 158-264 134-233 (271)
314 PF10354 DUF2431: Domain of un 94.0 0.87 1.9E-05 38.4 10.7 130 165-325 3-159 (166)
315 PF06859 Bin3: Bicoid-interact 94.0 0.013 2.8E-07 45.1 -0.4 82 226-316 1-90 (110)
316 PF05430 Methyltransf_30: S-ad 94.0 0.051 1.1E-06 43.4 2.9 76 209-319 32-112 (124)
317 cd00401 AdoHcyase S-adenosyl-L 93.7 0.62 1.3E-05 45.3 10.4 101 141-264 188-290 (413)
318 cd08230 glucose_DH Glucose deh 93.7 0.55 1.2E-05 44.7 10.1 93 158-266 172-272 (355)
319 cd08232 idonate-5-DH L-idonate 93.6 0.49 1.1E-05 44.5 9.5 93 158-263 165-262 (339)
320 cd00315 Cyt_C5_DNA_methylase C 93.6 0.22 4.7E-06 45.8 6.8 67 161-234 2-70 (275)
321 KOG2671 Putative RNA methylase 93.5 0.055 1.2E-06 50.1 2.7 74 158-232 208-290 (421)
322 PF03514 GRAS: GRAS domain fam 93.2 2.6 5.7E-05 40.5 13.8 101 158-261 110-242 (374)
323 PF07279 DUF1442: Protein of u 93.2 1.4 3.1E-05 38.4 10.6 99 159-263 42-148 (218)
324 PTZ00357 methyltransferase; Pr 92.9 0.63 1.4E-05 47.3 9.1 98 160-258 702-830 (1072)
325 cd08237 ribitol-5-phosphate_DH 92.8 1 2.2E-05 42.7 10.4 92 158-264 163-257 (341)
326 COG0686 Ald Alanine dehydrogen 92.7 0.41 9E-06 44.0 7.0 102 157-263 166-268 (371)
327 KOG2539 Mitochondrial/chloropl 92.6 0.42 9E-06 46.3 7.2 108 158-265 200-317 (491)
328 PF11312 DUF3115: Protein of u 92.4 0.2 4.4E-06 46.1 4.8 107 158-264 86-243 (315)
329 TIGR01202 bchC 2-desacetyl-2-h 92.3 0.84 1.8E-05 42.5 9.0 87 159-265 145-233 (308)
330 cd08281 liver_ADH_like1 Zinc-d 91.9 0.97 2.1E-05 43.3 9.1 94 158-264 191-291 (371)
331 PLN03154 putative allyl alcoho 91.7 2.8 6E-05 39.8 12.0 97 158-264 158-259 (348)
332 TIGR03366 HpnZ_proposed putati 91.6 1.8 3.9E-05 39.6 10.3 96 158-265 120-220 (280)
333 TIGR03451 mycoS_dep_FDH mycoth 91.3 1.5 3.2E-05 41.8 9.6 97 158-264 176-277 (358)
334 PRK11524 putative methyltransf 91.1 0.5 1.1E-05 43.6 6.0 54 209-262 8-79 (284)
335 cd08239 THR_DH_like L-threonin 91.1 1.2 2.5E-05 42.0 8.7 97 158-264 163-263 (339)
336 TIGR02825 B4_12hDH leukotriene 91.0 2.1 4.5E-05 40.0 10.3 96 158-264 138-238 (325)
337 KOG3924 Putative protein methy 90.7 1.2 2.5E-05 42.4 7.9 125 134-264 173-309 (419)
338 cd08255 2-desacetyl-2-hydroxye 90.7 2.6 5.7E-05 38.2 10.4 93 158-264 97-191 (277)
339 cd08234 threonine_DH_like L-th 90.4 3 6.5E-05 38.9 10.8 94 158-264 159-258 (334)
340 cd08245 CAD Cinnamyl alcohol d 90.1 3.4 7.3E-05 38.6 10.8 94 158-264 162-257 (330)
341 PRK05786 fabG 3-ketoacyl-(acyl 90.0 6.7 0.00014 34.5 12.2 102 159-264 5-136 (238)
342 TIGR03201 dearomat_had 6-hydro 89.7 2.3 4.9E-05 40.4 9.3 98 158-265 166-274 (349)
343 cd08294 leukotriene_B4_DH_like 89.6 2.8 6E-05 39.1 9.8 92 158-263 143-241 (329)
344 COG0604 Qor NADPH:quinone redu 89.6 3.4 7.4E-05 38.9 10.2 98 158-266 142-244 (326)
345 TIGR00518 alaDH alanine dehydr 89.5 1.1 2.3E-05 43.1 6.9 101 158-263 166-267 (370)
346 PRK10309 galactitol-1-phosphat 89.1 2.6 5.6E-05 39.8 9.3 98 158-265 160-262 (347)
347 PLN02740 Alcohol dehydrogenase 89.0 2.7 5.8E-05 40.4 9.4 95 158-265 198-302 (381)
348 PRK07576 short chain dehydroge 89.0 4.5 9.7E-05 36.6 10.4 73 159-234 9-94 (264)
349 COG1568 Predicted methyltransf 88.9 2.6 5.6E-05 38.2 8.2 102 158-263 152-260 (354)
350 KOG1201 Hydroxysteroid 17-beta 88.8 6.9 0.00015 36.0 11.1 79 157-239 36-127 (300)
351 TIGR00936 ahcY adenosylhomocys 88.7 4 8.8E-05 39.6 10.2 88 158-264 194-283 (406)
352 PF11899 DUF3419: Protein of u 88.7 0.53 1.2E-05 45.2 4.1 59 208-266 275-337 (380)
353 PLN02586 probable cinnamyl alc 88.6 2.5 5.3E-05 40.4 8.7 95 158-264 183-279 (360)
354 KOG2078 tRNA modification enzy 88.4 0.31 6.7E-06 46.5 2.3 61 158-219 249-310 (495)
355 cd08261 Zn_ADH7 Alcohol dehydr 88.4 6 0.00013 37.1 11.2 97 158-264 159-259 (337)
356 KOG0023 Alcohol dehydrogenase, 88.3 5.7 0.00012 36.9 10.2 98 158-266 181-282 (360)
357 cd08293 PTGR2 Prostaglandin re 88.0 5.3 0.00012 37.5 10.6 92 159-263 155-254 (345)
358 PRK07326 short chain dehydroge 88.0 6.7 0.00014 34.5 10.7 74 159-236 6-92 (237)
359 cd08295 double_bond_reductase_ 87.9 7 0.00015 36.7 11.3 97 158-264 151-252 (338)
360 PF05711 TylF: Macrocin-O-meth 87.9 1.6 3.4E-05 39.4 6.3 105 159-265 75-214 (248)
361 cd05285 sorbitol_DH Sorbitol d 87.6 6.7 0.00014 36.9 11.0 97 158-264 162-266 (343)
362 cd05278 FDH_like Formaldehyde 87.5 6.5 0.00014 36.9 10.9 96 158-263 167-267 (347)
363 TIGR02818 adh_III_F_hyde S-(hy 87.5 10 0.00022 36.2 12.3 98 158-265 185-289 (368)
364 PLN02827 Alcohol dehydrogenase 87.4 2.6 5.6E-05 40.5 8.1 97 158-264 193-296 (378)
365 cd08236 sugar_DH NAD(P)-depend 86.6 1.9 4.1E-05 40.6 6.6 94 158-264 159-259 (343)
366 PRK07806 short chain dehydroge 86.6 12 0.00025 33.3 11.5 102 159-263 6-134 (248)
367 PLN02494 adenosylhomocysteinas 86.5 3.6 7.8E-05 40.6 8.4 102 141-264 240-342 (477)
368 KOG1098 Putative SAM-dependent 86.3 2 4.4E-05 43.1 6.5 90 158-260 44-155 (780)
369 cd08242 MDR_like Medium chain 85.9 10 0.00022 35.1 11.2 90 158-263 155-245 (319)
370 cd08300 alcohol_DH_class_III c 85.9 6.9 0.00015 37.4 10.1 98 158-265 186-290 (368)
371 PRK08324 short chain dehydroge 85.8 8.9 0.00019 40.1 11.6 102 158-263 421-557 (681)
372 PRK03659 glutathione-regulated 85.7 8.8 0.00019 39.5 11.3 89 160-263 401-498 (601)
373 KOG2352 Predicted spermine/spe 85.6 1.5 3.1E-05 43.0 5.2 109 158-267 295-420 (482)
374 PRK08265 short chain dehydroge 85.4 9.5 0.00021 34.3 10.4 72 159-236 6-90 (261)
375 cd08238 sorbose_phosphate_red 85.4 11 0.00024 36.6 11.4 99 158-262 175-287 (410)
376 PLN02178 cinnamyl-alcohol dehy 85.2 5.3 0.00011 38.4 9.0 94 158-264 178-274 (375)
377 TIGR02819 fdhA_non_GSH formald 85.2 15 0.00033 35.5 12.2 101 158-265 185-301 (393)
378 PRK06181 short chain dehydroge 85.2 9.6 0.00021 34.2 10.3 74 160-236 2-88 (263)
379 PRK05854 short chain dehydroge 85.1 17 0.00038 33.8 12.2 77 159-236 14-103 (313)
380 PRK05476 S-adenosyl-L-homocyst 85.0 9.8 0.00021 37.2 10.6 88 158-264 211-300 (425)
381 PF03686 UPF0146: Uncharacteri 84.9 7.6 0.00016 30.9 8.0 90 159-266 14-105 (127)
382 cd08285 NADP_ADH NADP(H)-depen 84.7 5.9 0.00013 37.4 9.0 97 158-264 166-267 (351)
383 PRK12939 short chain dehydroge 84.6 7.5 0.00016 34.4 9.2 75 159-236 7-94 (250)
384 PRK07109 short chain dehydroge 84.4 17 0.00036 34.3 11.9 75 159-236 8-95 (334)
385 PRK10669 putative cation:proto 84.3 13 0.00028 37.9 11.7 88 160-262 418-514 (558)
386 cd08231 MDR_TM0436_like Hypoth 84.0 14 0.00031 34.9 11.4 97 158-264 177-281 (361)
387 cd08296 CAD_like Cinnamyl alco 83.2 8.5 0.00018 36.0 9.4 94 158-264 163-260 (333)
388 PF04072 LCM: Leucine carboxyl 83.2 5.9 0.00013 33.8 7.5 80 160-240 80-171 (183)
389 PLN02514 cinnamyl-alcohol dehy 83.1 8.8 0.00019 36.5 9.5 97 158-265 180-277 (357)
390 TIGR00497 hsdM type I restrict 83.1 13 0.00029 37.2 11.1 106 158-263 217-355 (501)
391 PRK08339 short chain dehydroge 82.9 26 0.00057 31.5 12.2 76 159-236 8-95 (263)
392 cd05281 TDH Threonine dehydrog 82.9 16 0.00034 34.3 11.1 96 158-264 163-263 (341)
393 PRK08306 dipicolinate synthase 82.7 6.4 0.00014 36.5 8.1 90 158-263 151-241 (296)
394 cd08298 CAD2 Cinnamyl alcohol 82.7 13 0.00029 34.5 10.4 89 159-264 168-257 (329)
395 PRK07533 enoyl-(acyl carrier p 82.7 22 0.00047 32.0 11.5 103 158-263 9-148 (258)
396 PF00145 DNA_methylase: C-5 cy 82.5 2.6 5.6E-05 39.4 5.5 64 161-233 2-68 (335)
397 COG4017 Uncharacterized protei 82.4 14 0.00031 31.7 9.0 85 159-264 45-130 (254)
398 PRK08267 short chain dehydroge 82.4 16 0.00034 32.7 10.5 73 160-237 2-88 (260)
399 PF11899 DUF3419: Protein of u 82.3 4.2 9.2E-05 39.1 6.8 43 159-202 36-78 (380)
400 KOG1269 SAM-dependent methyltr 82.2 4.4 9.5E-05 38.7 6.8 108 158-268 180-318 (364)
401 cd08277 liver_alcohol_DH_like 82.1 11 0.00025 35.8 9.9 98 158-265 184-288 (365)
402 PRK06701 short chain dehydroge 81.7 17 0.00036 33.4 10.5 102 159-263 46-181 (290)
403 PRK06940 short chain dehydroge 81.6 27 0.00058 31.7 11.8 99 160-262 3-124 (275)
404 PRK05650 short chain dehydroge 81.6 25 0.00054 31.7 11.5 74 161-237 2-88 (270)
405 cd08301 alcohol_DH_plants Plan 81.1 12 0.00027 35.5 9.8 98 158-265 187-291 (369)
406 PRK06128 oxidoreductase; Provi 81.1 24 0.00053 32.5 11.4 102 159-263 55-191 (300)
407 PRK12429 3-hydroxybutyrate deh 81.0 27 0.00059 30.9 11.5 77 159-238 4-93 (258)
408 KOG1209 1-Acyl dihydroxyaceton 81.0 12 0.00027 32.7 8.4 71 158-236 6-91 (289)
409 cd08278 benzyl_alcohol_DH Benz 81.0 4.2 9.1E-05 38.8 6.4 94 158-264 186-286 (365)
410 COG0270 Dcm Site-specific DNA 80.9 23 0.0005 33.3 11.3 123 159-312 3-141 (328)
411 PF05206 TRM13: Methyltransfer 80.8 7.1 0.00015 35.5 7.4 63 158-221 18-86 (259)
412 cd08233 butanediol_DH_like (2R 80.3 9.5 0.00021 36.0 8.6 98 158-265 172-274 (351)
413 TIGR00692 tdh L-threonine 3-de 79.6 28 0.00061 32.6 11.5 97 158-264 161-262 (340)
414 PRK07066 3-hydroxybutyryl-CoA 79.3 12 0.00025 35.3 8.5 96 159-260 7-116 (321)
415 COG1255 Uncharacterized protei 79.1 7.1 0.00015 30.4 5.7 89 159-265 14-104 (129)
416 cd08265 Zn_ADH3 Alcohol dehydr 79.1 18 0.0004 34.7 10.2 98 158-264 203-308 (384)
417 PF05050 Methyltransf_21: Meth 79.0 6.6 0.00014 32.3 6.3 53 164-216 1-60 (167)
418 PRK03562 glutathione-regulated 78.4 18 0.00038 37.5 10.3 89 159-262 400-497 (621)
419 KOG0821 Predicted ribosomal RN 78.2 6 0.00013 34.7 5.7 73 140-219 37-109 (326)
420 cd08286 FDH_like_ADH2 formalde 78.0 16 0.00035 34.3 9.4 96 158-263 166-266 (345)
421 cd08274 MDR9 Medium chain dehy 78.0 39 0.00084 31.6 12.0 91 158-263 177-273 (350)
422 PRK06182 short chain dehydroge 78.0 29 0.00062 31.3 10.7 71 159-238 3-86 (273)
423 COG2933 Predicted SAM-dependen 77.8 9.6 0.00021 34.4 7.0 88 156-256 209-296 (358)
424 PF02719 Polysacc_synt_2: Poly 77.8 8 0.00017 35.7 6.8 74 167-240 5-91 (293)
425 PRK08594 enoyl-(acyl carrier p 77.8 25 0.00053 31.6 10.1 104 159-263 7-147 (257)
426 PF03446 NAD_binding_2: NAD bi 77.8 4.9 0.00011 33.5 5.1 108 161-316 3-118 (163)
427 TIGR00675 dcm DNA-methyltransf 77.5 4.2 9.1E-05 38.1 5.1 64 162-233 1-66 (315)
428 PRK07984 enoyl-(acyl carrier p 77.1 35 0.00076 30.8 10.9 75 159-236 6-94 (262)
429 PF12242 Eno-Rase_NADH_b: NAD( 76.9 12 0.00026 26.9 6.0 32 159-190 39-73 (78)
430 PTZ00075 Adenosylhomocysteinas 76.8 18 0.0004 35.8 9.4 101 140-263 239-341 (476)
431 PRK07454 short chain dehydroge 76.8 19 0.00041 31.7 9.0 75 159-236 6-93 (241)
432 cd08270 MDR4 Medium chain dehy 76.4 51 0.0011 30.0 12.1 89 159-264 133-223 (305)
433 PRK05565 fabG 3-ketoacyl-(acyl 76.4 30 0.00065 30.4 10.2 75 159-236 5-93 (247)
434 cd08243 quinone_oxidoreductase 76.4 61 0.0013 29.6 12.8 94 158-264 142-239 (320)
435 cd08279 Zn_ADH_class_III Class 76.1 10 0.00022 36.1 7.4 94 158-264 182-283 (363)
436 COG1062 AdhC Zn-dependent alco 76.0 40 0.00087 31.8 10.7 97 158-267 185-289 (366)
437 PRK12742 oxidoreductase; Provi 75.8 43 0.00092 29.3 11.0 97 159-263 6-131 (237)
438 PRK08213 gluconate 5-dehydroge 75.5 18 0.0004 32.3 8.6 75 159-236 12-99 (259)
439 PRK07063 short chain dehydroge 75.4 18 0.00039 32.3 8.6 77 159-236 7-96 (260)
440 cd08263 Zn_ADH10 Alcohol dehyd 75.4 27 0.00059 33.1 10.2 94 158-264 187-288 (367)
441 PRK07985 oxidoreductase; Provi 75.0 35 0.00075 31.4 10.5 102 159-263 49-185 (294)
442 PRK15001 SAM-dependent 23S rib 74.9 38 0.00081 32.7 10.8 96 161-264 47-143 (378)
443 PRK06124 gluconate 5-dehydroge 74.8 20 0.00044 31.9 8.7 75 159-236 11-98 (256)
444 PLN02989 cinnamyl-alcohol dehy 74.7 13 0.00029 34.6 7.7 77 159-236 5-87 (325)
445 PRK05396 tdh L-threonine 3-deh 74.5 34 0.00074 32.0 10.6 95 158-265 163-265 (341)
446 cd05283 CAD1 Cinnamyl alcohol 74.4 45 0.00096 31.2 11.3 94 158-264 169-264 (337)
447 PRK06914 short chain dehydroge 74.4 20 0.00044 32.4 8.7 77 159-236 3-91 (280)
448 PF02737 3HCDH_N: 3-hydroxyacy 74.0 11 0.00025 32.0 6.4 96 161-263 1-114 (180)
449 PRK08415 enoyl-(acyl carrier p 73.8 50 0.0011 30.0 11.1 102 159-263 5-143 (274)
450 cd08240 6_hydroxyhexanoate_dh_ 73.6 39 0.00085 31.7 10.8 94 158-264 175-275 (350)
451 PRK07523 gluconate 5-dehydroge 73.4 21 0.00046 31.8 8.5 76 159-237 10-98 (255)
452 PF14740 DUF4471: Domain of un 73.3 4.9 0.00011 37.0 4.2 67 224-315 220-286 (289)
453 PRK05708 2-dehydropantoate 2-r 73.2 16 0.00036 33.9 7.8 97 159-263 2-104 (305)
454 COG0287 TyrA Prephenate dehydr 73.2 13 0.00027 34.3 6.9 89 159-260 3-95 (279)
455 cd08282 PFDH_like Pseudomonas 73.0 51 0.0011 31.4 11.5 98 158-265 176-287 (375)
456 cd08241 QOR1 Quinone oxidoredu 72.8 39 0.00085 30.8 10.4 93 158-264 139-239 (323)
457 COG0541 Ffh Signal recognition 72.6 1E+02 0.0022 30.2 13.6 130 133-266 70-224 (451)
458 PRK08703 short chain dehydroge 72.5 23 0.00051 31.1 8.5 75 159-235 6-96 (239)
459 cd08266 Zn_ADH_like1 Alcohol d 72.5 60 0.0013 29.9 11.7 93 158-263 166-265 (342)
460 PRK06079 enoyl-(acyl carrier p 72.5 57 0.0012 29.0 11.1 100 159-263 7-143 (252)
461 PRK08177 short chain dehydroge 72.4 30 0.00066 30.1 9.1 67 161-235 3-80 (225)
462 cd05279 Zn_ADH1 Liver alcohol 72.4 33 0.00071 32.6 9.9 97 158-264 183-286 (365)
463 KOG2912 Predicted DNA methylas 72.3 9.7 0.00021 35.3 5.7 75 162-236 106-188 (419)
464 PRK09291 short chain dehydroge 72.2 24 0.00052 31.3 8.6 74 160-236 3-83 (257)
465 PRK07814 short chain dehydroge 72.1 25 0.00054 31.6 8.6 74 159-235 10-96 (263)
466 PRK05808 3-hydroxybutyryl-CoA 72.1 30 0.00065 31.7 9.2 93 160-259 4-114 (282)
467 cd08289 MDR_yhfp_like Yhfp put 72.0 22 0.00048 32.8 8.6 94 159-265 147-245 (326)
468 PRK07417 arogenate dehydrogena 71.9 15 0.00032 33.7 7.1 84 161-259 2-87 (279)
469 PRK06114 short chain dehydroge 71.9 72 0.0016 28.3 11.6 76 159-237 8-97 (254)
470 cd08260 Zn_ADH6 Alcohol dehydr 71.7 29 0.00063 32.5 9.4 97 158-264 165-265 (345)
471 cd05289 MDR_like_2 alcohol deh 71.6 33 0.00071 31.1 9.5 91 158-263 144-238 (309)
472 PRK12937 short chain dehydroge 71.6 70 0.0015 28.0 11.5 102 159-263 5-139 (245)
473 PRK08251 short chain dehydroge 71.4 27 0.00059 30.8 8.7 77 159-236 2-91 (248)
474 PRK06172 short chain dehydroge 71.3 27 0.00057 31.0 8.6 75 159-236 7-94 (253)
475 PRK06949 short chain dehydroge 71.2 27 0.00059 31.0 8.7 75 159-236 9-96 (258)
476 KOG0725 Reductases with broad 71.2 81 0.0017 28.8 11.7 81 158-239 7-102 (270)
477 PRK07666 fabG 3-ketoacyl-(acyl 71.0 28 0.0006 30.6 8.6 75 159-236 7-94 (239)
478 PRK07102 short chain dehydroge 70.6 26 0.00056 30.9 8.3 73 160-234 2-84 (243)
479 PRK10083 putative oxidoreducta 70.1 33 0.00071 32.0 9.3 97 158-264 160-260 (339)
480 cd08291 ETR_like_1 2-enoyl thi 70.1 19 0.00041 33.5 7.6 92 159-264 143-243 (324)
481 PRK12744 short chain dehydroge 69.8 72 0.0016 28.3 11.1 101 159-262 8-144 (257)
482 cd08246 crotonyl_coA_red croto 69.6 66 0.0014 30.9 11.5 42 158-199 193-236 (393)
483 COG0863 DNA modification methy 69.6 23 0.00051 32.5 8.1 46 158-204 222-267 (302)
484 PRK13771 putative alcohol dehy 69.5 30 0.00065 32.2 8.9 93 158-264 162-256 (334)
485 PRK09496 trkA potassium transp 69.4 14 0.0003 36.3 6.8 68 158-233 230-304 (453)
486 PRK05872 short chain dehydroge 69.3 31 0.00068 31.7 8.8 75 159-237 9-96 (296)
487 PRK05867 short chain dehydroge 68.9 28 0.00061 30.9 8.2 76 159-237 9-97 (253)
488 PRK06035 3-hydroxyacyl-CoA deh 68.9 32 0.00069 31.7 8.7 94 160-260 4-118 (291)
489 PF01262 AlaDh_PNT_C: Alanine 68.7 14 0.00029 31.1 5.7 95 158-260 19-136 (168)
490 PF12692 Methyltransf_17: S-ad 68.7 27 0.00059 28.7 6.9 114 135-263 11-134 (160)
491 cd05288 PGDH Prostaglandin deh 68.5 59 0.0013 30.0 10.6 93 158-263 145-244 (329)
492 cd08267 MDR1 Medium chain dehy 68.5 53 0.0012 30.0 10.3 97 158-264 143-241 (319)
493 PRK07889 enoyl-(acyl carrier p 68.4 53 0.0011 29.4 9.9 100 159-263 7-145 (256)
494 PRK07890 short chain dehydroge 68.2 34 0.00074 30.3 8.7 75 159-236 5-92 (258)
495 cd05286 QOR2 Quinone oxidoredu 68.2 67 0.0014 29.1 10.9 93 158-264 136-236 (320)
496 PRK11154 fadJ multifunctional 68.0 34 0.00075 36.0 9.6 99 158-262 308-424 (708)
497 PRK09496 trkA potassium transp 68.0 49 0.0011 32.5 10.4 90 161-262 2-98 (453)
498 cd05284 arabinose_DH_like D-ar 68.0 17 0.00037 33.9 6.9 94 158-264 167-267 (340)
499 PRK08217 fabG 3-ketoacyl-(acyl 68.0 36 0.00077 30.0 8.7 74 159-235 5-91 (253)
500 PTZ00354 alcohol dehydrogenase 67.6 76 0.0017 29.2 11.2 94 158-264 140-241 (334)
No 1
>PLN02244 tocopherol O-methyltransferase
Probab=100.00 E-value=4.5e-36 Score=283.02 Aligned_cols=274 Identities=71% Similarity=1.189 Sum_probs=237.1
Q ss_pred hhHHHHHHHHHHHHccCchhHHHhhhccccccccCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcc
Q 016981 90 AAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGI 169 (379)
Q Consensus 90 ~~~~~~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGt 169 (379)
.....+.+.|..|||.....|+.+|++++|.+||.... ...+...++.++++++++.+++......++.+|||||||+
T Consensus 52 ~~~~~~~~~i~~~Yd~~~~~~e~~~g~~~h~g~~~~~~--~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~ 129 (340)
T PLN02244 52 AATADLKEGIAEFYDESSGVWEDVWGEHMHHGYYDPGA--SRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGI 129 (340)
T ss_pred cchhhHHHHHHHHHccchHHHHHHhCCcceeeccCCCC--CcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCC
Confidence 34567888999999999999999999999999998753 2234788889999999999887322223588999999999
Q ss_pred cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCCCCCHHHHHHHH
Q 016981 170 GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSEL 249 (379)
Q Consensus 170 G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~ 249 (379)
|.++..++++++++|+|+|+|+.|++.++++.+..++.+++.|.++|+.++|+++++||+|++..+++|++|+..+++++
T Consensus 130 G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~ 209 (340)
T PLN02244 130 GGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHMPDKRKFVQEL 209 (340)
T ss_pred CHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchhccCCHHHHHHHH
Confidence 99999999987889999999999999999999888887789999999999999999999999999999999999999999
Q ss_pred HHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEEecCCCcccchHH
Q 016981 250 ARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPA 329 (379)
Q Consensus 250 ~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~~~~~~ 329 (379)
+++|||||++++.+++.....+....+.......+..+...++.+.+.+.+++.++++++||+++++++|+..+.++|..
T Consensus 210 ~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~d~s~~v~~~~~~ 289 (340)
T PLN02244 210 ARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKTEDWSEHVAPFWPA 289 (340)
T ss_pred HHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeEeeeCcHHHHHHHHH
Confidence 99999999999999877655454455555555566666666777778899999999999999999999999999999999
Q ss_pred HHHhhhhhhhHHHHHHhhhhhhhhhhhHhHHHHHHH
Q 016981 330 VIHSALTWKGFTSLLRTGKLSILCCWNLYVISYNYL 365 (379)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~y~ 365 (379)
+.+..+.+.++.+....+|+.+++....|+..+.|.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 325 (340)
T PLN02244 290 VIKSALTLKGLFGLLTSGWATIRGALVMPLMIKGFK 325 (340)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 888888889999988899999999888887766554
No 2
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.95 E-value=7.1e-27 Score=205.60 Aligned_cols=205 Identities=22% Similarity=0.359 Sum_probs=155.7
Q ss_pred hhhHHHHHHHHHHHHccCchhHHHhhhccccccccCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCc
Q 016981 89 DAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCG 168 (379)
Q Consensus 89 ~~~~~~~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcG 168 (379)
......++++++..||..++... ......+.+ .+...++.. ++.+|||+|||
T Consensus 10 ~~~v~~vF~~ia~~YD~~n~~~S-------------------~g~~~~Wr~----~~i~~~~~~-----~g~~vLDva~G 61 (238)
T COG2226 10 QEKVQKVFDKVAKKYDLMNDLMS-------------------FGLHRLWRR----ALISLLGIK-----PGDKVLDVACG 61 (238)
T ss_pred HHHHHHHHHhhHHHHHhhccccc-------------------CcchHHHHH----HHHHhhCCC-----CCCEEEEecCC
Confidence 35678899999999998774422 111222222 233333443 39999999999
Q ss_pred ccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCCCCCHHHHHH
Q 016981 169 IGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVS 247 (379)
Q Consensus 169 tG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~ 247 (379)
||.++..+++.. .++|+|+|+|+.|++.|+++....++. +++|+++|++.+||++++||+|.+.+.|.+++|++.+|+
T Consensus 62 TGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~-~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~ 140 (238)
T COG2226 62 TGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQ-NVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALK 140 (238)
T ss_pred ccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCcc-ceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHH
Confidence 999999999987 579999999999999999999988764 499999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCEEEEEeccCCCCCCCccccchHHHH-HHHHHhhccC------------CCCCCCHHHHHHHHHhCCCcee
Q 016981 248 ELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQE-LLKKICDAYY------------LPAWCSTADYVKLLQSLSLEDI 314 (379)
Q Consensus 248 ~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------------~~~~~~~~~~~~~l~~aGF~~v 314 (379)
|++|+|||||++++.++..+........+..+... .+..+..... ...+.+.+++.++++++||+.+
T Consensus 141 E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i 220 (238)
T COG2226 141 EMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEV 220 (238)
T ss_pred HHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEE
Confidence 99999999999999998876554443333333333 1111111110 0135689999999999999998
Q ss_pred EEEecCCC
Q 016981 315 KAEDWSQN 322 (379)
Q Consensus 315 ~~~~~~~~ 322 (379)
..+.+...
T Consensus 221 ~~~~~~~G 228 (238)
T COG2226 221 RYENLTFG 228 (238)
T ss_pred eeEeeeee
Confidence 86555443
No 3
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.95 E-value=2.7e-27 Score=215.24 Aligned_cols=221 Identities=27% Similarity=0.435 Sum_probs=158.3
Q ss_pred HHHHHHHHHccCchhHHHhhhcccccc--ccCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHH
Q 016981 95 LKEGIAEFYDESSSLWEDIWGDHMHHG--FYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGS 172 (379)
Q Consensus 95 ~~~~i~~~yd~~~~~y~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~ 172 (379)
..+.|..|||..+++|..++++.+++. +|...... ...++.++++.+++.+++++ +.+|||||||.|.+
T Consensus 6 ~~~~i~~hYDl~ndfy~l~Ld~~m~YS~~~~~~~~~~----Le~AQ~~k~~~~~~~~~l~~-----G~~vLDiGcGwG~~ 76 (273)
T PF02353_consen 6 SRENISAHYDLGNDFYRLFLDPTMKYSCAYFDEGDDT----LEEAQERKLDLLCEKLGLKP-----GDRVLDIGCGWGGL 76 (273)
T ss_dssp -HHHHHHHHTS-HHHHTTTS-TT---S----SSTT------HHHHHHHHHHHHHTTTT--T-----T-EEEEES-TTSHH
T ss_pred HHHHHHHHcCCcHHHHHHhcCCCCCCCCeecCCchhh----HHHHHHHHHHHHHHHhCCCC-----CCEEEEeCCCccHH
Confidence 356799999999999999999988854 88875443 78999999999999999887 99999999999999
Q ss_pred HHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC--CHHHHHHHHH
Q 016981 173 SRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMP--DKSKFVSELA 250 (379)
Q Consensus 173 ~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~--~~~~~l~~~~ 250 (379)
+..+++++|++|+|+++|+.+.+.+++++++.|+.+++.+...|..+++ .+||.|++..+++|+. +...+++++.
T Consensus 77 ~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~---~~fD~IvSi~~~Ehvg~~~~~~~f~~~~ 153 (273)
T PF02353_consen 77 AIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP---GKFDRIVSIEMFEHVGRKNYPAFFRKIS 153 (273)
T ss_dssp HHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHH
T ss_pred HHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC---CCCCEEEEEechhhcChhHHHHHHHHHH
Confidence 9999999999999999999999999999999999889999999998865 3899999999999994 5689999999
Q ss_pred HhcCCCCEEEEEeccCCCCCCCccccchHHHHHHH-HHhhccCCCCCCCHHHHHHHHHhCCCceeEEEecCCCcccchHH
Q 016981 251 RVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLK-KICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPA 329 (379)
Q Consensus 251 r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~~~~~~ 329 (379)
++|||||++++..++.......... .....++. .+.+...+| +.+++...++++||++++++++..++..+...
T Consensus 154 ~~LkpgG~~~lq~i~~~~~~~~~~~--~~~~~~i~kyiFPgg~lp---s~~~~~~~~~~~~l~v~~~~~~~~hY~~Tl~~ 228 (273)
T PF02353_consen 154 RLLKPGGRLVLQTITHRDPPYHAER--RSSSDFIRKYIFPGGYLP---SLSEILRAAEDAGLEVEDVENLGRHYARTLRA 228 (273)
T ss_dssp HHSETTEEEEEEEEEE--HHHHHCT--TCCCHHHHHHTSTTS------BHHHHHHHHHHTT-EEEEEEE-HHHHHHHHHH
T ss_pred HhcCCCcEEEEEecccccccchhhc--CCCceEEEEeeCCCCCCC---CHHHHHHHHhcCCEEEEEEEEcCcCHHHHHHH
Confidence 9999999999988765432111100 00002222 234444444 78899999999999999998887766554444
Q ss_pred HHH
Q 016981 330 VIH 332 (379)
Q Consensus 330 ~~~ 332 (379)
+.+
T Consensus 229 W~~ 231 (273)
T PF02353_consen 229 WRE 231 (273)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 4
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.95 E-value=1.4e-25 Score=200.63 Aligned_cols=213 Identities=24% Similarity=0.343 Sum_probs=178.4
Q ss_pred HHHHHHHHHHccCchhHHHhhhcccc--ccccCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccH
Q 016981 94 ELKEGIAEFYDESSSLWEDIWGDHMH--HGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGG 171 (379)
Q Consensus 94 ~~~~~i~~~yd~~~~~y~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~ 171 (379)
...+.+..|||..+++|..++++.+. ..||..+... ..+++...++.+++.+++.+ |++|||||||.|.
T Consensus 15 ~~~~~i~~HYDl~n~fy~l~Ld~~~~Yscayf~~~~~t----L~eAQ~~k~~~~~~kl~L~~-----G~~lLDiGCGWG~ 85 (283)
T COG2230 15 RAAENIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDMT----LEEAQRAKLDLILEKLGLKP-----GMTLLDIGCGWGG 85 (283)
T ss_pred chhhhhhhHhhcchHHHHHhcCCCCceeeEEeCCCCCC----hHHHHHHHHHHHHHhcCCCC-----CCEEEEeCCChhH
Confidence 44567999999999999999998776 5677776542 78899999999999999887 9999999999999
Q ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCCCCC--HHHHHHHH
Q 016981 172 SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPD--KSKFVSEL 249 (379)
Q Consensus 172 ~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~--~~~~l~~~ 249 (379)
+++.+|++++.+|+|+++|++|.+.++++++..|+..++++...|..++. +.||.|++..+++|+.. ...+++.+
T Consensus 86 l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~fDrIvSvgmfEhvg~~~~~~ff~~~ 162 (283)
T COG2230 86 LAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EPFDRIVSVGMFEHVGKENYDDFFKKV 162 (283)
T ss_pred HHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---cccceeeehhhHHHhCcccHHHHHHHH
Confidence 99999999999999999999999999999999999889999999998874 44999999999999965 79999999
Q ss_pred HHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEEecCCCcccc
Q 016981 250 ARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPF 326 (379)
Q Consensus 250 ~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~~~ 326 (379)
+++|+|||.+++..+........ ....| ....+.+...+| +...+.+..+++||++.+.+.+..+....
T Consensus 163 ~~~L~~~G~~llh~I~~~~~~~~--~~~~~---i~~yiFPgG~lP---s~~~i~~~~~~~~~~v~~~~~~~~hYa~T 231 (283)
T COG2230 163 YALLKPGGRMLLHSITGPDQEFR--RFPDF---IDKYIFPGGELP---SISEILELASEAGFVVLDVESLRPHYART 231 (283)
T ss_pred HhhcCCCceEEEEEecCCCcccc--cchHH---HHHhCCCCCcCC---CHHHHHHHHHhcCcEEehHhhhcHHHHHH
Confidence 99999999999999876553221 22222 233355666655 78899999999999999887666555443
No 5
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.94 E-value=3.9e-27 Score=209.64 Aligned_cols=163 Identities=26% Similarity=0.447 Sum_probs=90.9
Q ss_pred CCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (379)
+.+|||+|||||.++..+++.. ..+|+|+|+|+.|++.|+++....+.. +++++++|++++|+++++||+|++.+.+
T Consensus 48 g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~~d~sfD~v~~~fgl 126 (233)
T PF01209_consen 48 GDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPFPDNSFDAVTCSFGL 126 (233)
T ss_dssp --EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S-TT-EEEEEEES-G
T ss_pred CCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcCCCCceeEEEHHhhH
Confidence 8899999999999999999876 369999999999999999999987764 8999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHH-------HHHHHHHhhcc-C----CCCCCCHHHHHH
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWE-------QELLKKICDAY-Y----LPAWCSTADYVK 304 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~-~----~~~~~~~~~~~~ 304 (379)
++++|+.++++|++|+|||||++++.++..+........+.-+. ..++..-...+ + +..+.+.+++.+
T Consensus 127 rn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~ 206 (233)
T PF01209_consen 127 RNFPDRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKE 206 (233)
T ss_dssp GG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH--------------------------------------
T ss_pred HhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeecccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999987654321111111111 01111100011 1 124668999999
Q ss_pred HHHhCCCceeEEEecCCC
Q 016981 305 LLQSLSLEDIKAEDWSQN 322 (379)
Q Consensus 305 ~l~~aGF~~v~~~~~~~~ 322 (379)
+|+++||+.++.+.+...
T Consensus 207 ~l~~~Gf~~v~~~~~~~G 224 (233)
T PF01209_consen 207 LLEEAGFKNVEYRPLTFG 224 (233)
T ss_dssp ------------------
T ss_pred cccccccccccccccccc
Confidence 999999999887655443
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.92 E-value=6e-24 Score=193.38 Aligned_cols=162 Identities=22% Similarity=0.330 Sum_probs=123.3
Q ss_pred CCEEEEeCCcccHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHH--cCCCCCeEEEEccCCCCCCCCCcccEEEecc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAA--RGLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~--~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~ 234 (379)
+.+|||+|||+|.++..++++.+ .+|+|+|+|+.|++.|+++... .+..+++.+.++|++++|+++++||+|++..
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~ 153 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGY 153 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEec
Confidence 78999999999999999998753 5999999999999999887542 1223579999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHH-HHHHhhcc-----------CCCCCCCHHHH
Q 016981 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQEL-LKKICDAY-----------YLPAWCSTADY 302 (379)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----------~~~~~~~~~~~ 302 (379)
+++|++++..++++++|+|||||++++.++..+... ....+..+.... .......+ ....+.+++++
T Consensus 154 ~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~~el 232 (261)
T PLN02233 154 GLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQP-FTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTGEEL 232 (261)
T ss_pred ccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcH-HHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCHHHH
Confidence 999999999999999999999999999998754421 111111111000 00000000 01236699999
Q ss_pred HHHHHhCCCceeEEEecCC
Q 016981 303 VKLLQSLSLEDIKAEDWSQ 321 (379)
Q Consensus 303 ~~~l~~aGF~~v~~~~~~~ 321 (379)
.++|+++||+++....+..
T Consensus 233 ~~ll~~aGF~~~~~~~~~~ 251 (261)
T PLN02233 233 EKLALEAGFSSAKHYEISG 251 (261)
T ss_pred HHHHHHCCCCEEEEEEcCC
Confidence 9999999999998766543
No 7
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.91 E-value=1.8e-23 Score=190.46 Aligned_cols=192 Identities=22% Similarity=0.447 Sum_probs=145.2
Q ss_pred ccCchhHHHhhhc-cccccccCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCC
Q 016981 104 DESSSLWEDIWGD-HMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGA 182 (379)
Q Consensus 104 d~~~~~y~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~ 182 (379)
......|+..++. .++++ . . .....+++.+.+.+ +.+|||||||+|..+..+++..++
T Consensus 18 ~~~~~~~e~~~g~~~~~~g-----g-------~----~~~~~~l~~l~l~~-----~~~VLDiGcG~G~~a~~la~~~~~ 76 (263)
T PTZ00098 18 DEGIKAYEFIFGEDYISSG-----G-------I----EATTKILSDIELNE-----NSKVLDIGSGLGGGCKYINEKYGA 76 (263)
T ss_pred cccchhHHHHhCCCCCCCC-----c-------h----HHHHHHHHhCCCCC-----CCEEEEEcCCCChhhHHHHhhcCC
Confidence 3456788988884 33333 1 1 13456666666655 899999999999999999887678
Q ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC--CHHHHHHHHHHhcCCCCEEE
Q 016981 183 KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMP--DKSKFVSELARVTAPAGTII 260 (379)
Q Consensus 183 ~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~--~~~~~l~~~~r~LkpgG~l~ 260 (379)
+|+|+|+|+.|++.|+++... .+++.+..+|+...++++++||+|++..+++|++ ++..++++++++|||||+++
T Consensus 77 ~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lv 153 (263)
T PTZ00098 77 HVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILL 153 (263)
T ss_pred EEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 999999999999999988653 2579999999998888889999999999999986 78999999999999999999
Q ss_pred EEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEEecCCCcccchH
Q 016981 261 IVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWP 328 (379)
Q Consensus 261 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~~~~~ 328 (379)
+.++....... ......... ... ...+.+++++.++|+++||++++.++.+.....++.
T Consensus 154 i~d~~~~~~~~----~~~~~~~~~---~~~--~~~~~~~~~~~~~l~~aGF~~v~~~d~~~~~~~~~~ 212 (263)
T PTZ00098 154 ITDYCADKIEN----WDEEFKAYI---KKR--KYTLIPIQEYGDLIKSCNFQNVVAKDISDYWLELLQ 212 (263)
T ss_pred EEEeccccccC----cHHHHHHHH---Hhc--CCCCCCHHHHHHHHHHCCCCeeeEEeCcHHHHHHHH
Confidence 99876543211 111111111 111 123568999999999999999999887665554443
No 8
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.90 E-value=9.2e-23 Score=175.83 Aligned_cols=198 Identities=18% Similarity=0.263 Sum_probs=148.0
Q ss_pred hhhHHHHHHHHHHHHccCchhHHHhhhccccccccCCCCCCCcchHHHHHHHHHH-HHHHHcCCCCCCCCCCCEEEEeCC
Q 016981 89 DAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIE-ETLRFAGVSEDPTKRPKNVVDVGC 167 (379)
Q Consensus 89 ~~~~~~~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~vLDiGc 167 (379)
...+..++++++..||..++.-.. + .+++.+ ..+..++.. +++++||++|
T Consensus 59 e~~V~~vF~~vA~~YD~mND~mSl--G----------------------iHRlWKd~~v~~L~p~-----~~m~~lDvaG 109 (296)
T KOG1540|consen 59 ERLVHHVFESVAKKYDIMNDAMSL--G----------------------IHRLWKDMFVSKLGPG-----KGMKVLDVAG 109 (296)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhc--c----------------------hhHHHHHHhhhccCCC-----CCCeEEEecC
Confidence 344678899999999987665320 0 111111 223333333 3799999999
Q ss_pred cccHHHHHHHHHc-C------CEEEEEeCCHHHHHHHHHHHHHcCCCCC--eEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 168 GIGGSSRYLAKKF-G------AKCQGITLSPVQAQRANALAAARGLADK--VSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 168 GtG~~~~~l~~~~-~------~~v~gvD~s~~~~~~a~~~~~~~~~~~~--i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
|||..+..+.+.. . .+|++.|++|.|+..++++..+.++..+ +.++++|++++||++++||..++.+.+..
T Consensus 110 GTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN 189 (296)
T KOG1540|consen 110 GTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRN 189 (296)
T ss_pred CcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceec
Confidence 9999999998876 3 6899999999999999999987776554 89999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHH-------hhcc-----CCCCCCCHHHHHHHH
Q 016981 239 MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKI-------CDAY-----YLPAWCSTADYVKLL 306 (379)
Q Consensus 239 ~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-----~~~~~~~~~~~~~~l 306 (379)
++++++.|++++|+|||||++.+.++..-+..+....+..+..+.+..+ ...+ .+..+.+.+++..+.
T Consensus 190 ~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~mi 269 (296)
T KOG1540|consen 190 VTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMI 269 (296)
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHH
Confidence 9999999999999999999999999876653333332222222221111 1111 112467899999999
Q ss_pred HhCCCceeE
Q 016981 307 QSLSLEDIK 315 (379)
Q Consensus 307 ~~aGF~~v~ 315 (379)
+++||..+.
T Consensus 270 edaGF~~~~ 278 (296)
T KOG1540|consen 270 EDAGFSSVN 278 (296)
T ss_pred HHcCCcccc
Confidence 999999886
No 9
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.90 E-value=4.2e-22 Score=178.77 Aligned_cols=173 Identities=19% Similarity=0.306 Sum_probs=129.5
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC
Q 016981 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (379)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 220 (379)
..+++.+.+.+ +.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.|+++++..+. +++.+..+|+.+.
T Consensus 35 ~~~l~~l~~~~-----~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~ 108 (231)
T TIGR02752 35 KDTMKRMNVQA-----GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMEL 108 (231)
T ss_pred HHHHHhcCCCC-----CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcC
Confidence 34455555544 7899999999999999999875 46999999999999999999887766 5899999999988
Q ss_pred CCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCcccc-------chHHHHHHH----HH-h
Q 016981 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESL-------QPWEQELLK----KI-C 288 (379)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~-------~~~~~~~~~----~~-~ 288 (379)
++++++||+|++..+++|++++..+++++.++|||||++++.+...+........+ .+.....+. .. .
T Consensus 109 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 188 (231)
T TIGR02752 109 PFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSW 188 (231)
T ss_pred CCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHH
Confidence 88888999999999999999999999999999999999999886543321100000 000000000 00 0
Q ss_pred hccCCCCCCCHHHHHHHHHhCCCceeEEEecCC
Q 016981 289 DAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQ 321 (379)
Q Consensus 289 ~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 321 (379)
.......+.+.+++.++|+++||++++++.+..
T Consensus 189 ~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~ 221 (231)
T TIGR02752 189 LQESTRDFPGMDELAEMFQEAGFKDVEVKSYTG 221 (231)
T ss_pred HHHHHHHcCCHHHHHHHHHHcCCCeeEEEEccc
Confidence 000112356899999999999999998877654
No 10
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.89 E-value=7.3e-22 Score=183.32 Aligned_cols=159 Identities=20% Similarity=0.263 Sum_probs=122.7
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++....+...++.+.++|++++++.+++||+|++..+++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~-g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM-GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence 4789999999999999999875 789999999999999999887655444589999999999887788999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhh-cc-CCCCCCCHHHHHHHHHhCCCceeE
Q 016981 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICD-AY-YLPAWCSTADYVKLLQSLSLEDIK 315 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~l~~aGF~~v~ 315 (379)
|+.|+..++++++++|||||.+++.++........ .......++..... .. ....+++++++.++|+++||++++
T Consensus 210 Hv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~---~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~ 286 (322)
T PLN02396 210 HVANPAEFCKSLSALTIPNGATVLSTINRTMRAYA---STIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKE 286 (322)
T ss_pred hcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHH---HhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEE
Confidence 99999999999999999999999998643210000 00000111111111 11 112467999999999999999998
Q ss_pred EEecC
Q 016981 316 AEDWS 320 (379)
Q Consensus 316 ~~~~~ 320 (379)
+..+.
T Consensus 287 ~~G~~ 291 (322)
T PLN02396 287 MAGFV 291 (322)
T ss_pred EeeeE
Confidence 86543
No 11
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.89 E-value=2.4e-21 Score=184.92 Aligned_cols=211 Identities=22% Similarity=0.310 Sum_probs=160.1
Q ss_pred HHHHHHHHHHHccCchhHHHhhhcccc--ccccCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCccc
Q 016981 93 RELKEGIAEFYDESSSLWEDIWGDHMH--HGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIG 170 (379)
Q Consensus 93 ~~~~~~i~~~yd~~~~~y~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG 170 (379)
....+.+..|||..+++|..++++.++ .+||.... ....++...+..+++.+++.+ +.+|||||||+|
T Consensus 110 ~~~~~~i~~hYd~~n~~y~l~ld~~m~ys~g~~~~~~-----~L~~Aq~~k~~~l~~~l~l~~-----g~rVLDIGcG~G 179 (383)
T PRK11705 110 KRAWIVGKEHYDLGNDLFEAMLDPRMQYSCGYWKDAD-----TLEEAQEAKLDLICRKLQLKP-----GMRVLDIGCGWG 179 (383)
T ss_pred hhHHHhhhhhcCCcHHHHHHhcCCCCcccccccCCCC-----CHHHHHHHHHHHHHHHhCCCC-----CCEEEEeCCCcc
Confidence 445667889999999999999998765 46775322 278888889999999888765 899999999999
Q ss_pred HHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCCCCC--HHHHHHH
Q 016981 171 GSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPD--KSKFVSE 248 (379)
Q Consensus 171 ~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~--~~~~l~~ 248 (379)
.++..+++.++++|+|+|+|+.|++.|+++.+ ++ ++++...|+.++ +++||.|++..+++|+.+ ...++++
T Consensus 180 ~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~ 252 (383)
T PRK11705 180 GLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL---NGQFDRIVSVGMFEHVGPKNYRTYFEV 252 (383)
T ss_pred HHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc---CCCCCEEEEeCchhhCChHHHHHHHHH
Confidence 99999998778899999999999999999874 32 478888888765 478999999999999954 4789999
Q ss_pred HHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEEecCCCcccchH
Q 016981 249 LARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWP 328 (379)
Q Consensus 249 ~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~~~~~ 328 (379)
+.++|||||.+++.++.......... .+... .+.+... ..+.+++.+.++ .||++.+++++..++..+..
T Consensus 253 i~r~LkpGG~lvl~~i~~~~~~~~~~---~~i~~---yifp~g~---lps~~~i~~~~~-~~~~v~d~~~~~~hy~~TL~ 322 (383)
T PRK11705 253 VRRCLKPDGLFLLHTIGSNKTDTNVD---PWINK---YIFPNGC---LPSVRQIAQASE-GLFVMEDWHNFGADYDRTLM 322 (383)
T ss_pred HHHHcCCCcEEEEEEccCCCCCCCCC---CCcee---eecCCCc---CCCHHHHHHHHH-CCcEEEEEecChhhHHHHHH
Confidence 99999999999998875543221111 11111 1112222 337888888766 69998888777666654433
Q ss_pred HH
Q 016981 329 AV 330 (379)
Q Consensus 329 ~~ 330 (379)
.+
T Consensus 323 ~W 324 (383)
T PRK11705 323 AW 324 (383)
T ss_pred HH
Confidence 33
No 12
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.88 E-value=1.9e-21 Score=177.02 Aligned_cols=171 Identities=19% Similarity=0.174 Sum_probs=127.6
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
+-+..+++.++ . ++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++....++.+++.++++|+.+
T Consensus 32 ~~~~~~l~~l~-~-----~~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~ 104 (255)
T PRK11036 32 QDLDRLLAELP-P-----RPLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQD 104 (255)
T ss_pred HHHHHHHHhcC-C-----CCCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHH
Confidence 34566776654 2 3689999999999999999987 789999999999999999999988877789999999987
Q ss_pred CC-CCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHh---hccC-CC
Q 016981 220 QP-FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKIC---DAYY-LP 294 (379)
Q Consensus 220 ~~-~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~ 294 (379)
++ +.+++||+|++..+++|+.++..+++++.++|||||++++..+....... ...+............ .... ..
T Consensus 105 l~~~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~ 183 (255)
T PRK11036 105 IAQHLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLM-HNMVAGNFDYVQAGMPKRKKRTLSPD 183 (255)
T ss_pred HhhhcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHH-HHHHccChHHHHhcCccccccCCCCC
Confidence 63 56789999999999999999999999999999999999988755332100 0000000000000000 0001 11
Q ss_pred CCCCHHHHHHHHHhCCCceeEEEe
Q 016981 295 AWCSTADYVKLLQSLSLEDIKAED 318 (379)
Q Consensus 295 ~~~~~~~~~~~l~~aGF~~v~~~~ 318 (379)
..++++++.++|+++||+++....
T Consensus 184 ~~~~~~~l~~~l~~aGf~~~~~~g 207 (255)
T PRK11036 184 YPLDPEQVYQWLEEAGWQIMGKTG 207 (255)
T ss_pred CCCCHHHHHHHHHHCCCeEeeeee
Confidence 346899999999999999986543
No 13
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.87 E-value=7.6e-21 Score=188.30 Aligned_cols=168 Identities=28% Similarity=0.490 Sum_probs=132.8
Q ss_pred HHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC
Q 016981 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221 (379)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 221 (379)
.+.+++.+.+. ++.+|||||||+|..+..+++..+.+|+|+|+|+.+++.|+++... ...++.|.++|+...+
T Consensus 255 te~l~~~~~~~-----~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~--~~~~v~~~~~d~~~~~ 327 (475)
T PLN02336 255 TKEFVDKLDLK-----PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIG--RKCSVEFEVADCTKKT 327 (475)
T ss_pred HHHHHHhcCCC-----CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhc--CCCceEEEEcCcccCC
Confidence 34555555543 3789999999999999999987788999999999999999987653 3357999999999888
Q ss_pred CCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHH
Q 016981 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTAD 301 (379)
Q Consensus 222 ~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (379)
+++++||+|++..+++|++++..++++++++|||||++++.++......+. .....++... .+ .+.+.++
T Consensus 328 ~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~-----~~~~~~~~~~--g~---~~~~~~~ 397 (475)
T PLN02336 328 YPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPS-----PEFAEYIKQR--GY---DLHDVQA 397 (475)
T ss_pred CCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCc-----HHHHHHHHhc--CC---CCCCHHH
Confidence 888899999999999999999999999999999999999998765432211 1111222211 11 2458999
Q ss_pred HHHHHHhCCCceeEEEecCCCcccc
Q 016981 302 YVKLLQSLSLEDIKAEDWSQNVAPF 326 (379)
Q Consensus 302 ~~~~l~~aGF~~v~~~~~~~~~~~~ 326 (379)
+.++|+++||+++.+++++..+..+
T Consensus 398 ~~~~l~~aGF~~i~~~d~~~~~~~~ 422 (475)
T PLN02336 398 YGQMLKDAGFDDVIAEDRTDQFLQV 422 (475)
T ss_pred HHHHHHHCCCeeeeeecchHHHHHH
Confidence 9999999999999888777655443
No 14
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.85 E-value=4.2e-20 Score=172.70 Aligned_cols=156 Identities=21% Similarity=0.227 Sum_probs=118.5
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+.+|||||||+|.++..+++.....|+|+|+|+.++..++......+...++.+..+|++++|+ +++||+|++..+++|
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~H 201 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLYH 201 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhhc
Confidence 7899999999999999999875457999999999987665543333223579999999999988 788999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEEe
Q 016981 239 MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAED 318 (379)
Q Consensus 239 ~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 318 (379)
+.++..++++++++|||||.+++.++..+.... ..+.+. ..+......+. ..+.+++.++|+++||+++++.+
T Consensus 202 ~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~--~~l~p~--~~y~~~~~~~~---lps~~~l~~~L~~aGF~~i~~~~ 274 (322)
T PRK15068 202 RRSPLDHLKQLKDQLVPGGELVLETLVIDGDEN--TVLVPG--DRYAKMRNVYF---IPSVPALKNWLERAGFKDVRIVD 274 (322)
T ss_pred cCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCc--cccCch--hHHhcCcccee---CCCHHHHHHHHHHcCCceEEEEe
Confidence 999999999999999999999998754332111 011110 11111111122 23899999999999999999987
Q ss_pred cCCC
Q 016981 319 WSQN 322 (379)
Q Consensus 319 ~~~~ 322 (379)
....
T Consensus 275 ~~~t 278 (322)
T PRK15068 275 VSVT 278 (322)
T ss_pred CCCC
Confidence 6553
No 15
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.85 E-value=3.4e-21 Score=166.51 Aligned_cols=156 Identities=26% Similarity=0.340 Sum_probs=120.9
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
++.+|||+|||.|.++..+|+. |++|+|+|+++.+++.|+.+....++ ++++.+..++++....++||+|+|..|++
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~-Ga~VtgiD~se~~I~~Ak~ha~e~gv--~i~y~~~~~edl~~~~~~FDvV~cmEVlE 135 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL-GASVTGIDASEKPIEVAKLHALESGV--NIDYRQATVEDLASAGGQFDVVTCMEVLE 135 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC-CCeeEEecCChHHHHHHHHhhhhccc--cccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence 3899999999999999999998 89999999999999999999998886 57888888888866568999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccC--CCCCCCHHHHHHHHHhCCCceeE
Q 016981 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYY--LPAWCSTADYVKLLQSLSLEDIK 315 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~aGF~~v~ 315 (379)
|++|+..+++.+.+++||||.++++++..... ...+.-...+.+-+..+..- ...+..++++..++..+|+...+
T Consensus 136 Hv~dp~~~~~~c~~lvkP~G~lf~STinrt~k---a~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~ 212 (243)
T COG2227 136 HVPDPESFLRACAKLVKPGGILFLSTINRTLK---AYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIID 212 (243)
T ss_pred ccCCHHHHHHHHHHHcCCCcEEEEeccccCHH---HHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEe
Confidence 99999999999999999999999998652210 00000111111111111110 11356789999999999998887
Q ss_pred EEec
Q 016981 316 AEDW 319 (379)
Q Consensus 316 ~~~~ 319 (379)
...+
T Consensus 213 ~~g~ 216 (243)
T COG2227 213 RKGL 216 (243)
T ss_pred ecce
Confidence 6544
No 16
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.85 E-value=9.1e-20 Score=165.65 Aligned_cols=164 Identities=21% Similarity=0.311 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccC
Q 016981 138 QVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217 (379)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~ 217 (379)
+....+.+++.++.. ++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.++++.. ...+.++|+
T Consensus 27 q~~~a~~l~~~l~~~-----~~~~vLDiGcG~G~~~~~l~~~-~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~ 94 (251)
T PRK10258 27 QRQSADALLAMLPQR-----KFTHVLDAGCGPGWMSRYWRER-GSQVTALDLSPPMLAQARQKDA------ADHYLAGDI 94 (251)
T ss_pred HHHHHHHHHHhcCcc-----CCCeEEEeeCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCC------CCCEEEcCc
Confidence 334555566665533 2789999999999999998876 7899999999999999988642 356889999
Q ss_pred CCCCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCC
Q 016981 218 LQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWC 297 (379)
Q Consensus 218 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (379)
+.+++++++||+|+++.++++++++..++.++.++|||||.++++.+...... . ....+...........+.
T Consensus 95 ~~~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~-------e-l~~~~~~~~~~~~~~~~~ 166 (251)
T PRK10258 95 ESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLP-------E-LHQAWQAVDERPHANRFL 166 (251)
T ss_pred ccCcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchH-------H-HHHHHHHhccCCccccCC
Confidence 99998888999999999999999999999999999999999999987654321 1 112222222222333577
Q ss_pred CHHHHHHHHHhCCCceeEEEecCCC
Q 016981 298 STADYVKLLQSLSLEDIKAEDWSQN 322 (379)
Q Consensus 298 ~~~~~~~~l~~aGF~~v~~~~~~~~ 322 (379)
+.+++..+|+..|++. +++.+...
T Consensus 167 ~~~~l~~~l~~~~~~~-~~~~~~~~ 190 (251)
T PRK10258 167 PPDAIEQALNGWRYQH-HIQPITLW 190 (251)
T ss_pred CHHHHHHHHHhCCcee-eeeEEEEE
Confidence 9999999999999864 44444443
No 17
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.85 E-value=1.5e-19 Score=167.09 Aligned_cols=170 Identities=16% Similarity=0.153 Sum_probs=122.7
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
.....++..++... +.+|||+|||+|.++..++......|+|+|+|+.|+..++......+...++.+..+++++
T Consensus 108 ~~~~~~l~~l~~~~-----g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~ 182 (314)
T TIGR00452 108 IKWDRVLPHLSPLK-----GRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQ 182 (314)
T ss_pred HHHHHHHHhcCCCC-----CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHH
Confidence 34555666655443 8899999999999999888874457999999999988654432222223478888899988
Q ss_pred CCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCH
Q 016981 220 QPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCST 299 (379)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (379)
++.. .+||+|+++.+++|++++..+|++++++|||||.|++.+...+... ...+.+. ..+.+....+. ..+.
T Consensus 183 lp~~-~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~--~~~l~p~--~ry~k~~nv~f---lpS~ 254 (314)
T TIGR00452 183 LHEL-YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDL--NTVLVPK--DRYAKMKNVYF---IPSV 254 (314)
T ss_pred CCCC-CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCcc--ccccCch--HHHHhcccccc---CCCH
Confidence 8754 5899999999999999999999999999999999999875432211 1111111 11112212222 3489
Q ss_pred HHHHHHHHhCCCceeEEEecCCC
Q 016981 300 ADYVKLLQSLSLEDIKAEDWSQN 322 (379)
Q Consensus 300 ~~~~~~l~~aGF~~v~~~~~~~~ 322 (379)
.++..+|+++||+++++.+....
T Consensus 255 ~~L~~~L~~aGF~~V~i~~~~~t 277 (314)
T TIGR00452 255 SALKNWLEKVGFENFRILDVLKT 277 (314)
T ss_pred HHHHHHHHHCCCeEEEEEeccCC
Confidence 99999999999999998765543
No 18
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.85 E-value=1.8e-19 Score=162.29 Aligned_cols=164 Identities=24% Similarity=0.391 Sum_probs=124.6
Q ss_pred CCEEEEeCCcccHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (379)
+.+|||+|||+|.++..+++.++ .+++|+|+++.+++.+++++...+...++.+..+|+.+.+++.++||+|++..++
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l 131 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGL 131 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEeccc
Confidence 78999999999999999998873 8999999999999999999877655567999999998888777899999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHH-HHHHHHHhhcc------------CCCCCCCHHHHH
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWE-QELLKKICDAY------------YLPAWCSTADYV 303 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------------~~~~~~~~~~~~ 303 (379)
+++.++..+++++.++|+|||.+++.++..+..... .....+. ..........+ ....+++.+++.
T Consensus 132 ~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (239)
T PRK00216 132 RNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPL-KKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEELA 210 (239)
T ss_pred ccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHH-HHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHHHH
Confidence 999999999999999999999999988654332110 0000000 00000000000 001245789999
Q ss_pred HHHHhCCCceeEEEecCCCc
Q 016981 304 KLLQSLSLEDIKAEDWSQNV 323 (379)
Q Consensus 304 ~~l~~aGF~~v~~~~~~~~~ 323 (379)
++|+++||+++++..+...+
T Consensus 211 ~~l~~aGf~~~~~~~~~~~~ 230 (239)
T PRK00216 211 AMLEEAGFERVRYRNLTGGI 230 (239)
T ss_pred HHHHhCCCceeeeeeeecCc
Confidence 99999999999888765444
No 19
>PRK05785 hypothetical protein; Provisional
Probab=99.84 E-value=1.5e-19 Score=161.00 Aligned_cols=152 Identities=19% Similarity=0.207 Sum_probs=108.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+.+|||+|||||.++..+++..+.+|+|+|+|+.|++.|+++ ..+.++|++++|+++++||+|++..+++|
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp~~d~sfD~v~~~~~l~~ 122 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA---------DDKVVGSFEALPFRDKSFDVVMSSFALHA 122 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc---------cceEEechhhCCCCCCCEEEEEecChhhc
Confidence 679999999999999999987657999999999999998863 23578999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHh-------hcc-CC----CCCCCHHHHHHHH
Q 016981 239 MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKIC-------DAY-YL----PAWCSTADYVKLL 306 (379)
Q Consensus 239 ~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~----~~~~~~~~~~~~l 306 (379)
++|+.+++++++|+|||. +.+.++..++.......+.-+....+..+. ..+ ++ ..+.+++++.++|
T Consensus 123 ~~d~~~~l~e~~RvLkp~--~~ile~~~p~~~~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~ 200 (226)
T PRK05785 123 SDNIEKVIAEFTRVSRKQ--VGFIAMGKPDNVIKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIF 200 (226)
T ss_pred cCCHHHHHHHHHHHhcCc--eEEEEeCCCCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999994 334444333211111111111111111110 001 11 1356899999999
Q ss_pred HhCCCceeEEEecCCC
Q 016981 307 QSLSLEDIKAEDWSQN 322 (379)
Q Consensus 307 ~~aGF~~v~~~~~~~~ 322 (379)
+++| ..+..+.+...
T Consensus 201 ~~~~-~~~~~~~~~~G 215 (226)
T PRK05785 201 EKYA-DIKVYEERGLG 215 (226)
T ss_pred HHHh-CceEEEEcccc
Confidence 9974 66666655443
No 20
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.84 E-value=6.4e-20 Score=166.97 Aligned_cols=158 Identities=25% Similarity=0.340 Sum_probs=117.2
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCC
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 218 (379)
+.+..+++.++... +.+|||+|||+|.++..+++++ +.+|+|+|+|+.|++.|++ .++.+.++|++
T Consensus 16 ~~~~~ll~~l~~~~-----~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~--------~~~~~~~~d~~ 82 (255)
T PRK14103 16 RPFYDLLARVGAER-----ARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE--------RGVDARTGDVR 82 (255)
T ss_pred CHHHHHHHhCCCCC-----CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh--------cCCcEEEcChh
Confidence 35566777766554 7899999999999999999986 6799999999999999876 25789999998
Q ss_pred CCCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHH-----HHHhhc--c
Q 016981 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELL-----KKICDA--Y 291 (379)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~--~ 291 (379)
+++ ++++||+|+++.+++|++++..++++++++|||||++++..+.... .+. ........ ...... +
T Consensus 83 ~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~~----~~~~~~~~~~~~w~~~~~~~~~ 156 (255)
T PRK14103 83 DWK-PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFD-APS----HAAVRALARREPWAKLLRDIPF 156 (255)
T ss_pred hCC-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcC-Chh----HHHHHHHhccCchhHHhccccc
Confidence 774 4679999999999999999999999999999999999987543211 011 00000000 000000 0
Q ss_pred C-CCCCCCHHHHHHHHHhCCCceeEE
Q 016981 292 Y-LPAWCSTADYVKLLQSLSLEDIKA 316 (379)
Q Consensus 292 ~-~~~~~~~~~~~~~l~~aGF~~v~~ 316 (379)
. ...+.+++++.++|+++||++...
T Consensus 157 ~~~~~~~~~~~~~~~l~~aGf~v~~~ 182 (255)
T PRK14103 157 RVGAVVQTPAGYAELLTDAGCKVDAW 182 (255)
T ss_pred ccCcCCCCHHHHHHHHHhCCCeEEEE
Confidence 0 113458999999999999975443
No 21
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.84 E-value=6.2e-20 Score=163.91 Aligned_cols=150 Identities=27% Similarity=0.433 Sum_probs=124.3
Q ss_pred CEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 160 KNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
++|||||||+|.++..+++.+ +.+|+|+|+|+.+++.+++++...++.+++.+...|+...+++ ++||+|++..+++|
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 379999999999999999987 5799999999999999999999888888899999999776664 58999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEEe
Q 016981 239 MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAED 318 (379)
Q Consensus 239 ~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 318 (379)
+.++..++++++++|||||++++.++.......... ......+.+..+|.++++++||++++..+
T Consensus 80 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~---------------~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~ 144 (224)
T smart00828 80 IKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEH---------------EETTSYLVTREEWAELLARNNLRVVEGVD 144 (224)
T ss_pred CCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccc---------------cccccccCCHHHHHHHHHHCCCeEEEeEE
Confidence 999999999999999999999999864322111000 00001144889999999999999999988
Q ss_pred cCCCccc
Q 016981 319 WSQNVAP 325 (379)
Q Consensus 319 ~~~~~~~ 325 (379)
+..++..
T Consensus 145 ~~~~~~~ 151 (224)
T smart00828 145 ASLEIAN 151 (224)
T ss_pred CcHhHhh
Confidence 8776654
No 22
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.83 E-value=3.5e-19 Score=165.91 Aligned_cols=145 Identities=23% Similarity=0.325 Sum_probs=117.5
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecccc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (379)
++.+|||+|||+|.++..+++.. +.+|+++|+|+.|++.|+++... .++++..+|++++++++++||+|++..++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp~~~~sFDvVIs~~~L 188 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCCCCCCceeEEEEcChh
Confidence 37899999999999999998876 57999999999999999987642 46889999999999888999999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEE
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 316 (379)
+|++++..++++++++|||||++++.+..... .+..+..... +. .+.+.+++.++|+++||+.+++
T Consensus 189 ~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~---------~~~~r~~~~~---~~--~~~t~eEl~~lL~~aGF~~V~i 254 (340)
T PLN02490 189 EYWPDPQRGIKEAYRVLKIGGKACLIGPVHPT---------FWLSRFFADV---WM--LFPKEEEYIEWFTKAGFKDVKL 254 (340)
T ss_pred hhCCCHHHHHHHHHHhcCCCcEEEEEEecCcc---------hhHHHHhhhh---hc--cCCCHHHHHHHHHHCCCeEEEE
Confidence 99999999999999999999999887643221 1111111111 11 1347899999999999999998
Q ss_pred EecC
Q 016981 317 EDWS 320 (379)
Q Consensus 317 ~~~~ 320 (379)
+++.
T Consensus 255 ~~i~ 258 (340)
T PLN02490 255 KRIG 258 (340)
T ss_pred EEcC
Confidence 7653
No 23
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.82 E-value=1.8e-18 Score=158.98 Aligned_cols=153 Identities=24% Similarity=0.319 Sum_probs=121.7
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (379)
++.+|||+|||+|..+..+++..+ .+|+|+|+++.|++.|+++....++ +++.+..+|++++++++++||+|+++.+
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-~~v~~~~~d~~~l~~~~~~fD~Vi~~~v 155 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-TNVEFRLGEIEALPVADNSVDVIISNCV 155 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-CCEEEEEcchhhCCCCCCceeEEEEcCc
Confidence 589999999999999888777653 4799999999999999999888776 4899999999998888889999999999
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeE
Q 016981 236 GEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIK 315 (379)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 315 (379)
++|.++...++++++++|||||++++.++..... +......... ... .......+.+++.++|+++||..++
T Consensus 156 ~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~------~~~~~~~~~~-~~~-~~~~~~~~~~e~~~~l~~aGf~~v~ 227 (272)
T PRK11873 156 INLSPDKERVFKEAFRVLKPGGRFAISDVVLRGE------LPEEIRNDAE-LYA-GCVAGALQEEEYLAMLAEAGFVDIT 227 (272)
T ss_pred ccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCC------CCHHHHHhHH-HHh-ccccCCCCHHHHHHHHHHCCCCceE
Confidence 9999999999999999999999999998754331 1111111111 111 1112245789999999999999987
Q ss_pred EEec
Q 016981 316 AEDW 319 (379)
Q Consensus 316 ~~~~ 319 (379)
+...
T Consensus 228 i~~~ 231 (272)
T PRK11873 228 IQPK 231 (272)
T ss_pred EEec
Confidence 7543
No 24
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.82 E-value=1.3e-18 Score=154.98 Aligned_cols=162 Identities=23% Similarity=0.338 Sum_probs=121.0
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (379)
++.+|||+|||+|.++..+++..+ .+++|+|+++.+++.++++.. ...++.+..+|+.+.++++++||+|++..+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~ 115 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPFEDNSFDAVTIAFG 115 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCCCCCcEEEEEEeee
Confidence 378999999999999999998874 599999999999999998875 235789999999988877789999999999
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhcc------------CCCCCCCHHHHH
Q 016981 236 GEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAY------------YLPAWCSTADYV 303 (379)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~ 303 (379)
++++.++..+++++.+.|+|||++++.++...........+..+...........+ ....+.+.+++.
T Consensus 116 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (223)
T TIGR01934 116 LRNVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELA 195 (223)
T ss_pred eCCcccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHH
Confidence 99999999999999999999999999886543221110000000000000000000 001245889999
Q ss_pred HHHHhCCCceeEEEecCCC
Q 016981 304 KLLQSLSLEDIKAEDWSQN 322 (379)
Q Consensus 304 ~~l~~aGF~~v~~~~~~~~ 322 (379)
++|+++||+.+.++.+...
T Consensus 196 ~~l~~aGf~~~~~~~~~~~ 214 (223)
T TIGR01934 196 AMLKEAGFEEVRYRSLTFG 214 (223)
T ss_pred HHHHHcCCccceeeeeecc
Confidence 9999999999888765544
No 25
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.81 E-value=7.7e-19 Score=158.88 Aligned_cols=154 Identities=16% Similarity=0.171 Sum_probs=113.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (379)
+.+|||+|||+|..+..+++.. +.+|+|+|+|+.|++.|++++...+...++.++++|+.+.+++ .+|+|+++.+
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~~ 134 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNFT 134 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhhH
Confidence 7899999999999999888742 6799999999999999999998877767899999999888764 5999999999
Q ss_pred cCCCCC--HHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHH-------Hhh----ccCCCCCCCHHHH
Q 016981 236 GEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKK-------ICD----AYYLPAWCSTADY 302 (379)
Q Consensus 236 l~~~~~--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~----~~~~~~~~~~~~~ 302 (379)
++|+++ ...++++++++|||||.+++.+............+......+... +.. .-......+.++.
T Consensus 135 l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~~ 214 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETH 214 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHHH
Confidence 999964 368999999999999999999854333222221111111111100 000 0001113488899
Q ss_pred HHHHHhCCCcee
Q 016981 303 VKLLQSLSLEDI 314 (379)
Q Consensus 303 ~~~l~~aGF~~v 314 (379)
.++|+++||+.+
T Consensus 215 ~~~L~~aGF~~v 226 (247)
T PRK15451 215 KARLHKAGFEHS 226 (247)
T ss_pred HHHHHHcCchhH
Confidence 999999999865
No 26
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.81 E-value=6.6e-20 Score=154.81 Aligned_cols=136 Identities=33% Similarity=0.529 Sum_probs=105.0
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
++.+|||+|||+|.++..+++. +.+|+|+|+++.+++. .++.....+....+.++++||+|+++.+++
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~-~~~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~ 89 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKR-GFEVTGVDISPQMIEK-----------RNVVFDNFDAQDPPFPDGSFDLIICNDVLE 89 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHT-TSEEEEEESSHHHHHH-----------TTSEEEEEECHTHHCHSSSEEEEEEESSGG
T ss_pred CCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHhh-----------hhhhhhhhhhhhhhccccchhhHhhHHHHh
Confidence 4889999999999999999776 7799999999999987 134444444445455678999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHH---hhccCCCCCCCHHHHHHHHHhCCCcee
Q 016981 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKI---CDAYYLPAWCSTADYVKLLQSLSLEDI 314 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~aGF~~v 314 (379)
|++|+..+|+++.++|||||++++.++.... .. ....... ........+++.+++.++++++||+++
T Consensus 90 ~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~---------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv 159 (161)
T PF13489_consen 90 HLPDPEEFLKELSRLLKPGGYLVISDPNRDD---------PS-PRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIV 159 (161)
T ss_dssp GSSHHHHHHHHHHHCEEEEEEEEEEEEBTTS---------HH-HHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEE
T ss_pred hcccHHHHHHHHHHhcCCCCEEEEEEcCCcc---------hh-hhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEE
Confidence 9999999999999999999999999975432 00 1111111 000011246799999999999999988
Q ss_pred E
Q 016981 315 K 315 (379)
Q Consensus 315 ~ 315 (379)
+
T Consensus 160 ~ 160 (161)
T PF13489_consen 160 E 160 (161)
T ss_dssp E
T ss_pred E
Confidence 6
No 27
>PRK08317 hypothetical protein; Provisional
Probab=99.81 E-value=5.1e-18 Score=152.83 Aligned_cols=173 Identities=28% Similarity=0.408 Sum_probs=128.5
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC
Q 016981 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (379)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 220 (379)
+.+++.+.+.+ +.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.++++... ...++.+...|+...
T Consensus 9 ~~~~~~~~~~~-----~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~--~~~~~~~~~~d~~~~ 81 (241)
T PRK08317 9 ARTFELLAVQP-----GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG--LGPNVEFVRGDADGL 81 (241)
T ss_pred HHHHHHcCCCC-----CCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC--CCCceEEEecccccC
Confidence 34455555554 8899999999999999999876 46899999999999999987332 335899999999888
Q ss_pred CCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHH
Q 016981 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTA 300 (379)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (379)
++++++||+|++..+++|+.++..+++++.++|||||++++.+....... .................... ....+..
T Consensus 82 ~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 158 (241)
T PRK08317 82 PFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLV-WHSGDRALMRKILNFWSDHF--ADPWLGR 158 (241)
T ss_pred CCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCcee-ecCCChHHHHHHHHHHHhcC--CCCcHHH
Confidence 88888999999999999999999999999999999999999875322110 01111111222222222211 1234577
Q ss_pred HHHHHHHhCCCceeEEEecCCCccc
Q 016981 301 DYVKLLQSLSLEDIKAEDWSQNVAP 325 (379)
Q Consensus 301 ~~~~~l~~aGF~~v~~~~~~~~~~~ 325 (379)
.+.++|+++||+++.+..+.....+
T Consensus 159 ~~~~~l~~aGf~~~~~~~~~~~~~~ 183 (241)
T PRK08317 159 RLPGLFREAGLTDIEVEPYTLIETD 183 (241)
T ss_pred HHHHHHHHcCCCceeEEEEEEeccC
Confidence 8999999999999888776555444
No 28
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.81 E-value=1.9e-19 Score=150.81 Aligned_cols=106 Identities=32% Similarity=0.513 Sum_probs=96.8
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--CCCCcccEEEec
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSM 233 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~V~~~ 233 (379)
++.+|||+|||+|.++..+++.. +.+++|+|+|+.|++.|+++++..+.+ +++|.++|+.+++ ++ +.||+|++.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccC-CCeeEEEEc
Confidence 47899999999999999999543 689999999999999999999998885 9999999999976 55 899999999
Q ss_pred cccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
.+++|+.++..+++++.++|++||.+++.+..
T Consensus 81 ~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 99999999999999999999999999998865
No 29
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.80 E-value=1.1e-18 Score=157.27 Aligned_cols=155 Identities=14% Similarity=0.144 Sum_probs=114.3
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (379)
+.+|||+|||+|.++..+++++ +.+|+|+|+|+.|++.|++++...+...++.++++|+.+.+++ .+|+|++..+
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~~ 131 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNFT 131 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeecc
Confidence 7899999999999999998864 5789999999999999999988766556799999999988764 5899999999
Q ss_pred cCCCCC--HHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHH----------H-hhccCCCCCCCHHHH
Q 016981 236 GEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKK----------I-CDAYYLPAWCSTADY 302 (379)
Q Consensus 236 l~~~~~--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~~~~~~~~~~~~ 302 (379)
++|+++ +..++++++++|||||.+++.+............+......+... . ..........+.+++
T Consensus 132 l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~ 211 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSIETH 211 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCHHHH
Confidence 999864 578999999999999999999864432211111111100001000 0 000011124589999
Q ss_pred HHHHHhCCCceeE
Q 016981 303 VKLLQSLSLEDIK 315 (379)
Q Consensus 303 ~~~l~~aGF~~v~ 315 (379)
.++|+++||..++
T Consensus 212 ~~~l~~aGF~~~~ 224 (239)
T TIGR00740 212 KARLKNVGFSHVE 224 (239)
T ss_pred HHHHHHcCCchHH
Confidence 9999999998654
No 30
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.80 E-value=2.1e-19 Score=137.61 Aligned_cols=95 Identities=38% Similarity=0.623 Sum_probs=84.3
Q ss_pred EEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCCCCCH
Q 016981 163 VDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDK 242 (379)
Q Consensus 163 LDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~ 242 (379)
||+|||+|..+..+++..+.+|+|+|+++.+++.++++... .++.+..+|++++|+++++||+|++..+++|++++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~----~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~ 76 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN----EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDP 76 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT----STEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc----cCchheeehHHhCccccccccccccccceeeccCH
Confidence 89999999999999997567999999999999999998754 35669999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCEEEE
Q 016981 243 SKFVSELARVTAPAGTIII 261 (379)
Q Consensus 243 ~~~l~~~~r~LkpgG~l~i 261 (379)
.++++++.|+|||||++++
T Consensus 77 ~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 77 EAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHcCcCeEEeC
Confidence 9999999999999999986
No 31
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.80 E-value=3.3e-18 Score=149.36 Aligned_cols=137 Identities=23% Similarity=0.363 Sum_probs=109.3
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+.+|||+|||+|..+..++++ +.+|+|+|+|+.|++.++++....++ .++.+.+.|+.+.+++ ++||+|++..+++|
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~ 107 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAAENL-DNLHTAVVDLNNLTFD-GEYDFILSTVVLMF 107 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCC-CcceEEecChhhCCcC-CCcCEEEEecchhh
Confidence 789999999999999999987 78999999999999999999888777 4689999999877664 67999999999988
Q ss_pred CC--CHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEE
Q 016981 239 MP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (379)
Q Consensus 239 ~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 316 (379)
++ +...+++++.++|||||++++.........+.. ...+..++.+++.++++ ||+++..
T Consensus 108 ~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~el~~~~~--~~~~~~~ 168 (197)
T PRK11207 108 LEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT-----------------VGFPFAFKEGELRRYYE--GWEMVKY 168 (197)
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCC-----------------CCCCCccCHHHHHHHhC--CCeEEEe
Confidence 75 457999999999999999766543322111100 01123457889999887 9988776
Q ss_pred E
Q 016981 317 E 317 (379)
Q Consensus 317 ~ 317 (379)
.
T Consensus 169 ~ 169 (197)
T PRK11207 169 N 169 (197)
T ss_pred e
Confidence 3
No 32
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.80 E-value=1.8e-19 Score=156.77 Aligned_cols=152 Identities=23% Similarity=0.295 Sum_probs=114.4
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC-C----CeEEEEccCCCCCCCCCcccEEEec
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLA-D----KVSFQVGDALQQPFPDGQFDLVWSM 233 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~----~i~~~~~d~~~~~~~~~~fD~V~~~ 233 (379)
+++|||+|||+|.++..|++. |+.|+|+|+++.|++.|++......+- . ++++.+.|++... +.||.|+|.
T Consensus 90 g~~ilDvGCGgGLLSepLArl-ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL-GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHhh-CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeH
Confidence 588999999999999999997 899999999999999999984322111 1 3566777777653 459999999
Q ss_pred cccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccC--CCCCCCHHHHHHHHHhCCC
Q 016981 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYY--LPAWCSTADYVKLLQSLSL 311 (379)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~aGF 311 (379)
.+++|+.|+..++..+.+.|||||.+++++.......-... -+..+..-++.+... ...|.+++++..+|+.+|+
T Consensus 166 evleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~---i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~ 242 (282)
T KOG1270|consen 166 EVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGT---IFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGA 242 (282)
T ss_pred HHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhcc---ccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCc
Confidence 99999999999999999999999999999865443221111 112223333333221 1246799999999999998
Q ss_pred ceeEEE
Q 016981 312 EDIKAE 317 (379)
Q Consensus 312 ~~v~~~ 317 (379)
.+..+.
T Consensus 243 ~v~~v~ 248 (282)
T KOG1270|consen 243 QVNDVV 248 (282)
T ss_pred chhhhh
Confidence 876654
No 33
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.78 E-value=1e-18 Score=138.47 Aligned_cols=105 Identities=33% Similarity=0.582 Sum_probs=90.1
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccC-CCCCCCCCcccEEEecc-
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA-LQQPFPDGQFDLVWSME- 234 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~fD~V~~~~- 234 (379)
|+.+|||+|||+|.++..++++. +.+|+|+|+|+.+++.|++++...+..++++++++|+ ..... .+.||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCC
Confidence 47899999999999999999954 8899999999999999999997777778999999999 33333 46699999999
Q ss_pred ccCCC---CCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 235 SGEHM---PDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 235 ~l~~~---~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+++++ .+..++++++++.|+|||++++.+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 45434 345889999999999999999865
No 34
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.78 E-value=1.9e-17 Score=154.67 Aligned_cols=164 Identities=20% Similarity=0.277 Sum_probs=121.7
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC
Q 016981 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221 (379)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 221 (379)
..+++.+.... ..+|||||||+|.++..+++++ +.+++++|. +.+++.+++++...++.++++++.+|+.+.+
T Consensus 139 ~~l~~~~~~~~-----~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~ 212 (306)
T TIGR02716 139 QLLLEEAKLDG-----VKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES 212 (306)
T ss_pred HHHHHHcCCCC-----CCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC
Confidence 33445544443 7899999999999999999998 679999998 7899999999999888788999999998766
Q ss_pred CCCCcccEEEeccccCCCCCH--HHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCH
Q 016981 222 FPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCST 299 (379)
Q Consensus 222 ~~~~~fD~V~~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (379)
++ .+|+|++..++++..+. ..++++++++|||||++++.++...+.. ...+. .....+....-......+.+.
T Consensus 213 ~~--~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~ 287 (306)
T TIGR02716 213 YP--EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPE--NPNFD-YLSHYILGAGMPFSVLGFKEQ 287 (306)
T ss_pred CC--CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCC--Cchhh-HHHHHHHHcccccccccCCCH
Confidence 54 36999999999988654 5799999999999999999997554321 11111 111111111101111124468
Q ss_pred HHHHHHHHhCCCceeEEE
Q 016981 300 ADYVKLLQSLSLEDIKAE 317 (379)
Q Consensus 300 ~~~~~~l~~aGF~~v~~~ 317 (379)
++|.++|+++||+.+++.
T Consensus 288 ~e~~~ll~~aGf~~v~~~ 305 (306)
T TIGR02716 288 ARYKEILESLGYKDVTMV 305 (306)
T ss_pred HHHHHHHHHcCCCeeEec
Confidence 999999999999988753
No 35
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.77 E-value=1.3e-17 Score=145.44 Aligned_cols=136 Identities=18% Similarity=0.258 Sum_probs=107.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+.+|||+|||+|.++..++++ +.+|+|+|+|+.|++.++++....++ ++.+...|+...+++ ++||+|++..+++|
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~-g~~V~~iD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLA-GYDVRAWDHNPASIASVLDMKARENL--PLRTDAYDINAAALN-EDYDFIFSTVVFMF 106 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHhCC--CceeEeccchhcccc-CCCCEEEEeccccc
Confidence 679999999999999999987 78999999999999999998887776 377888887766654 67999999999998
Q ss_pred CC--CHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEE
Q 016981 239 MP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (379)
Q Consensus 239 ~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 316 (379)
++ +...++++++++|||||++++.++......+.. ...+..++++++.++++ +|+++..
T Consensus 107 ~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~-----------------~~~~~~~~~~el~~~f~--~~~~~~~ 167 (195)
T TIGR00477 107 LQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCH-----------------MPFSFTFKEDELRQYYA--DWELLKY 167 (195)
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCC-----------------CCcCccCCHHHHHHHhC--CCeEEEe
Confidence 85 457899999999999999777765432211110 01122458999999886 5888776
Q ss_pred E
Q 016981 317 E 317 (379)
Q Consensus 317 ~ 317 (379)
.
T Consensus 168 ~ 168 (195)
T TIGR00477 168 N 168 (195)
T ss_pred e
Confidence 5
No 36
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.77 E-value=1.9e-17 Score=151.04 Aligned_cols=157 Identities=25% Similarity=0.406 Sum_probs=115.0
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCC
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 218 (379)
.....++..+.... +.+|||||||+|.++..+++.+ +.+|+|+|+|+.|++.|+++. +++.+..+|+.
T Consensus 18 ~~~~~ll~~~~~~~-----~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~ 86 (258)
T PRK01683 18 RPARDLLARVPLEN-----PRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIA 86 (258)
T ss_pred cHHHHHHhhCCCcC-----CCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchh
Confidence 35556666666544 7899999999999999999887 679999999999999998864 46889999987
Q ss_pred CCCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCcccc------chHHHHHHHHHhhcc-
Q 016981 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESL------QPWEQELLKKICDAY- 291 (379)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~- 291 (379)
.+. ++++||+|+++.+++|+++...++++++++|||||.+++....... .+....+ .+|... .....
T Consensus 87 ~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~~~-~~~~~~~~~~~~~~~w~~~----~~~~~~ 160 (258)
T PRK01683 87 SWQ-PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPDNLD-EPSHVLMREVAENGPWEQN----LPDRGA 160 (258)
T ss_pred ccC-CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCCCCC-CHHHHHHHHHHccCchHHH----hccccc
Confidence 764 3568999999999999999999999999999999999886422111 0100000 011111 00010
Q ss_pred CCCCCCCHHHHHHHHHhCCCce
Q 016981 292 YLPAWCSTADYVKLLQSLSLED 313 (379)
Q Consensus 292 ~~~~~~~~~~~~~~l~~aGF~~ 313 (379)
....+.+++.+.++|.++|+.+
T Consensus 161 ~~~~~~~~~~~~~~l~~~g~~v 182 (258)
T PRK01683 161 RRAPLPPPHAYYDALAPAACRV 182 (258)
T ss_pred cCcCCCCHHHHHHHHHhCCCce
Confidence 0112457889999999999864
No 37
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.76 E-value=1.2e-17 Score=149.57 Aligned_cols=157 Identities=23% Similarity=0.276 Sum_probs=115.6
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
.+++|||||||+|..+..++.+....|+|+|.++...-..+....-.|....+.+....++++|. .+.||+|++.+||+
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLY 193 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVLY 193 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeehh
Confidence 38999999999999999999885567999999987665543332223332234444356788876 68999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEE
Q 016981 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 317 (379)
|..+|...|.+++..|+|||.|++-+...+... ...+.+. ..+.+....+++| |...+..+|+++||++|++.
T Consensus 194 Hrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~--~~~L~P~--~rYa~m~nv~FiP---s~~~L~~wl~r~gF~~v~~v 266 (315)
T PF08003_consen 194 HRRSPLDHLKQLKDSLRPGGELVLETLVIDGDE--NTVLVPE--DRYAKMRNVWFIP---SVAALKNWLERAGFKDVRCV 266 (315)
T ss_pred ccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCC--ceEEccC--CcccCCCceEEeC---CHHHHHHHHHHcCCceEEEe
Confidence 999999999999999999999999876544321 1112111 1122233334444 89999999999999999997
Q ss_pred ecCCC
Q 016981 318 DWSQN 322 (379)
Q Consensus 318 ~~~~~ 322 (379)
+....
T Consensus 267 ~~~~T 271 (315)
T PF08003_consen 267 DVSPT 271 (315)
T ss_pred cCccC
Confidence 76543
No 38
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.75 E-value=6.2e-18 Score=141.53 Aligned_cols=158 Identities=20% Similarity=0.237 Sum_probs=117.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeE-EEEccCCCCC-CCCCcccEEEecccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVS-FQVGDALQQP-FPDGQFDLVWSMESG 236 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~-~~~~d~~~~~-~~~~~fD~V~~~~~l 236 (379)
...|||+|||||..-.+.-..-+.+|+++|+++.|-+.+.+.+++. .+.++. |++++.+++| ++++++|.|++..+|
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~-k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvL 155 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEK-KPLQVERFVVADGENLPQLADGSYDTVVCTLVL 155 (252)
T ss_pred ccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhc-cCcceEEEEeechhcCcccccCCeeeEEEEEEE
Confidence 5678999999998766655333689999999999999999999887 456776 9999999997 889999999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEE
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 316 (379)
+...|+.+.|+++.|+|||||++++.+...... ..+..................-.++. +..+.|+++-|+.++.
T Consensus 156 CSve~~~k~L~e~~rlLRpgG~iifiEHva~~y----~~~n~i~q~v~ep~~~~~~dGC~ltr-d~~e~Leda~f~~~~~ 230 (252)
T KOG4300|consen 156 CSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEY----GFWNRILQQVAEPLWHLESDGCVLTR-DTGELLEDAEFSIDSC 230 (252)
T ss_pred eccCCHHHHHHHHHHhcCCCcEEEEEecccccc----hHHHHHHHHHhchhhheeccceEEeh-hHHHHhhhcccccchh
Confidence 999999999999999999999999998544321 11111122222221111111111234 4557889999999888
Q ss_pred EecCCC
Q 016981 317 EDWSQN 322 (379)
Q Consensus 317 ~~~~~~ 322 (379)
+....+
T Consensus 231 kr~~~~ 236 (252)
T KOG4300|consen 231 KRFNFG 236 (252)
T ss_pred hcccCC
Confidence 765543
No 39
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.74 E-value=1.4e-16 Score=143.54 Aligned_cols=141 Identities=30% Similarity=0.421 Sum_probs=114.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
+.+|||+|||+|.++..+++.+ ..+++|+|+++.+++.++++.. +++.+..+|+.+.++++++||+|++..+++
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~ 109 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPLEDSSFDLIVSNLALQ 109 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCCCCCceeEEEEhhhhh
Confidence 5799999999999999999887 5679999999999999887653 478899999999888889999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEE
Q 016981 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 317 (379)
|+.++..++.++.++|||||++++.++..... .. ....... ....+.+.+++.++++++ |..+...
T Consensus 110 ~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~-------~~-~~~~~~~-----~~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 110 WCDDLSQALSELARVLKPGGLLAFSTFGPGTL-------HE-LRQSFGQ-----HGLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred hccCHHHHHHHHHHHcCCCcEEEEEeCCccCH-------HH-HHHHHHH-----hccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 99999999999999999999999987644321 11 1111111 112356899999999998 9877654
Q ss_pred e
Q 016981 318 D 318 (379)
Q Consensus 318 ~ 318 (379)
.
T Consensus 176 ~ 176 (240)
T TIGR02072 176 E 176 (240)
T ss_pred E
Confidence 3
No 40
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.73 E-value=4.1e-16 Score=139.79 Aligned_cols=204 Identities=22% Similarity=0.321 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHccCc-hhHHHhhhccccccccCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccH
Q 016981 93 RELKEGIAEFYDESS-SLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGG 171 (379)
Q Consensus 93 ~~~~~~i~~~yd~~~-~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~ 171 (379)
....+.+..||+..+ ..|+..++......... ..........+.++..+... ...++.+|||+|||+|.
T Consensus 7 ~~~~~~v~~~~~~~~~~~w~~~y~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~--~~~~~~~vLDvGcG~G~ 76 (230)
T PRK07580 7 LEHKSEVRTYFNRTGFDRWARIYSDAPVSKVRA--------TVRAGHQRMRDTVLSWLPAD--GDLTGLRILDAGCGVGS 76 (230)
T ss_pred hhchhhhhHHHhhhccchHHHhhCcCchhHHHH--------HhcchHHHHHHHHHHHHHhc--CCCCCCEEEEEeCCCCH
Confidence 345566888888653 66776655421110000 00111122333344433220 01137899999999999
Q ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCCCCCH--HHHHHHH
Q 016981 172 SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDK--SKFVSEL 249 (379)
Q Consensus 172 ~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~--~~~l~~~ 249 (379)
++..+++. +..|+|+|+|+.|++.|++++...+...++.+..+|+. ..+++||+|++..+++|+++. ..+++++
T Consensus 77 ~~~~l~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~---~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l 152 (230)
T PRK07580 77 LSIPLARR-GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE---SLLGRFDTVVCLDVLIHYPQEDAARMLAHL 152 (230)
T ss_pred HHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch---hccCCcCEEEEcchhhcCCHHHHHHHHHHH
Confidence 99999987 67899999999999999999988776568999999843 335789999999999998644 6788888
Q ss_pred HHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhcc---CCCCCCCHHHHHHHHHhCCCceeEEEecC
Q 016981 250 ARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAY---YLPAWCSTADYVKLLQSLSLEDIKAEDWS 320 (379)
Q Consensus 250 ~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 320 (379)
.+.+++++.+.+.. .. ..... ...+....... ....+.+.+++.++++++||++++...+.
T Consensus 153 ~~~~~~~~~i~~~~---~~------~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 216 (230)
T PRK07580 153 ASLTRGSLIFTFAP---YT------PLLAL-LHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTERIS 216 (230)
T ss_pred HhhcCCeEEEEECC---cc------HHHHH-HHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeeeecc
Confidence 88775444333211 00 00000 01111111100 01134588999999999999999886554
No 41
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.73 E-value=5.6e-16 Score=133.28 Aligned_cols=127 Identities=20% Similarity=0.175 Sum_probs=105.6
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
+.+|||+|||+|..+..++... +.+|+|+|+|+.|++.|+++.+..+++ ++++..+|+.+.+. .++||+|+++.
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~~~-~~~fDlV~~~~--- 120 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEFGQ-EEKFDVVTSRA--- 120 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhCCC-CCCccEEEEcc---
Confidence 7899999999999999998766 689999999999999999999998874 59999999988766 67999999874
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEE
Q 016981 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 317 (379)
+.+...++++++++|||||++++..... ...++.++.+..|+.+..+.
T Consensus 121 -~~~~~~~l~~~~~~LkpGG~lv~~~~~~-------------------------------~~~~l~~~~~~~~~~~~~~~ 168 (187)
T PRK00107 121 -VASLSDLVELCLPLLKPGGRFLALKGRD-------------------------------PEEEIAELPKALGGKVEEVI 168 (187)
T ss_pred -ccCHHHHHHHHHHhcCCCeEEEEEeCCC-------------------------------hHHHHHHHHHhcCceEeeeE
Confidence 4567899999999999999999875210 24456677777798877666
Q ss_pred ecCCC
Q 016981 318 DWSQN 322 (379)
Q Consensus 318 ~~~~~ 322 (379)
.+..+
T Consensus 169 ~~~~~ 173 (187)
T PRK00107 169 ELTLP 173 (187)
T ss_pred EEecC
Confidence 55443
No 42
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.73 E-value=2.3e-16 Score=140.35 Aligned_cols=164 Identities=25% Similarity=0.287 Sum_probs=117.9
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
.+...+++.+.. ...++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|++++...+...++.+.++|+..
T Consensus 40 ~~~~~~~~~l~~---~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~ 115 (219)
T TIGR02021 40 AMRRKLLDWLPK---DPLKGKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLS 115 (219)
T ss_pred HHHHHHHHHHhc---CCCCCCEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhh
Confidence 445555555542 0123789999999999999999986 679999999999999999999877665689999999887
Q ss_pred CCCCCCcccEEEeccccCCCCC--HHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccC---CC
Q 016981 220 QPFPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYY---LP 294 (379)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 294 (379)
.+ ++||+|++..+++|++. ...+++++.+++++++.+.+.... .... ....+........ .-
T Consensus 116 ~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~---------~~~~-~~~~~~~~~~~~~~~~~~ 182 (219)
T TIGR02021 116 LC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPKT---------AWLA-FLKMIGELFPGSSRATSA 182 (219)
T ss_pred CC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCc---------hHHH-HHHHHHhhCcCcccccce
Confidence 65 78999999999998854 478899999999877665543210 0000 0111111111100 01
Q ss_pred CCCCHHHHHHHHHhCCCceeEEEecC
Q 016981 295 AWCSTADYVKLLQSLSLEDIKAEDWS 320 (379)
Q Consensus 295 ~~~~~~~~~~~l~~aGF~~v~~~~~~ 320 (379)
.+.+++++.++++++||+++......
T Consensus 183 ~~~~~~~~~~~l~~~Gf~v~~~~~~~ 208 (219)
T TIGR02021 183 YLHPMTDLERALGELGWKIVREGLVS 208 (219)
T ss_pred EEecHHHHHHHHHHcCceeeeeeccc
Confidence 24589999999999999999886443
No 43
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.72 E-value=2.1e-15 Score=139.84 Aligned_cols=198 Identities=21% Similarity=0.288 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHccCc-hhHHHhhhcccccc--ccCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcc
Q 016981 93 RELKEGIAEFYDESS-SLWEDIWGDHMHHG--FYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGI 169 (379)
Q Consensus 93 ~~~~~~i~~~yd~~~-~~y~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGt 169 (379)
....+.+..|||..+ +.|...|+...... .+. ..+ ... ..++.+++.+.... ..++.+|||+|||+
T Consensus 87 ~~~~~~V~~~Fd~~a~~~w~~iy~~~d~v~~~~l~-~~~----~~~----~~v~~~l~~l~~~~--~~~~~~VLDlGcGt 155 (315)
T PLN02585 87 GDDKEVVREYFNTTGFERWRKIYGETDEVNKVQLD-IRL----GHA----QTVEKVLLWLAEDG--SLAGVTVCDAGCGT 155 (315)
T ss_pred HHHHHHHHHHhcccchhhHHHhcCCccccCceeee-ccc----ChH----HHHHHHHHHHHhcC--CCCCCEEEEecCCC
Confidence 455677888998764 55666666421110 010 000 011 22333333332110 11378999999999
Q ss_pred cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC----CCCeEEEEccCCCCCCCCCcccEEEeccccCCCCCH--H
Q 016981 170 GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL----ADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDK--S 243 (379)
Q Consensus 170 G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~--~ 243 (379)
|.++..+++. +.+|+|+|+|+.|++.|+++.+..+. ..++.|...|+..+ +++||+|++..+++|+++. .
T Consensus 156 G~~a~~la~~-g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~vL~H~p~~~~~ 231 (315)
T PLN02585 156 GSLAIPLALE-GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCLDVLIHYPQDKAD 231 (315)
T ss_pred CHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEcCEEEecCHHHHH
Confidence 9999999987 78999999999999999999876421 13678888887654 4789999999999998764 3
Q ss_pred HHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCC------CCCCCHHHHHHHHHhCCCceeEEE
Q 016981 244 KFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYL------PAWCSTADYVKLLQSLSLEDIKAE 317 (379)
Q Consensus 244 ~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~aGF~~v~~~ 317 (379)
.+++.+.+ +.+||. ++.. .... + ...++......+.. ..+++.++++++|+++||+++..+
T Consensus 232 ~ll~~l~~-l~~g~l-iIs~-~p~~-------~---~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~~ 298 (315)
T PLN02585 232 GMIAHLAS-LAEKRL-IISF-APKT-------L---YYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVARRE 298 (315)
T ss_pred HHHHHHHh-hcCCEE-EEEe-CCcc-------h---HHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEEEE
Confidence 46666665 455554 4432 1111 0 11112221111111 124589999999999999987665
Q ss_pred e
Q 016981 318 D 318 (379)
Q Consensus 318 ~ 318 (379)
.
T Consensus 299 ~ 299 (315)
T PLN02585 299 M 299 (315)
T ss_pred E
Confidence 3
No 44
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.71 E-value=8.5e-16 Score=138.02 Aligned_cols=156 Identities=28% Similarity=0.332 Sum_probs=115.7
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-CCCCcccEEEecccc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDLVWSMESG 236 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~V~~~~~l 236 (379)
++.+|||+|||+|.++..+++. +.+++++|+++.+++.+++++...+. ++.+...|+.+.+ ..+++||+|++..++
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARL-GADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 4789999999999999999886 78999999999999999998876654 5788888877664 345789999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhc--cCCCCCCCHHHHHHHHHhCCCcee
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDA--YYLPAWCSTADYVKLLQSLSLEDI 314 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~aGF~~v 314 (379)
+|++++..+++.+.+.|+|||.+++..+..... .................. .....+++++++.++|+++||+++
T Consensus 125 ~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v 201 (233)
T PRK05134 125 EHVPDPASFVRACAKLVKPGGLVFFSTLNRNLK---SYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQ 201 (233)
T ss_pred hccCCHHHHHHHHHHHcCCCcEEEEEecCCChH---HHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEe
Confidence 999999999999999999999999876432110 000000000011100000 111246689999999999999999
Q ss_pred EEEec
Q 016981 315 KAEDW 319 (379)
Q Consensus 315 ~~~~~ 319 (379)
....+
T Consensus 202 ~~~~~ 206 (233)
T PRK05134 202 DITGL 206 (233)
T ss_pred eeeeE
Confidence 87543
No 45
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=9.2e-18 Score=151.72 Aligned_cols=139 Identities=22% Similarity=0.278 Sum_probs=104.3
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCC
Q 016981 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (379)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 218 (379)
..+.-+.++.+.. ++.+|||+|||+|.+++..++....+|+|+|++|.+++.|++++..++++..+.....+..
T Consensus 149 T~lcL~~Le~~~~------~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~ 222 (300)
T COG2264 149 TSLCLEALEKLLK------KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLL 222 (300)
T ss_pred HHHHHHHHHHhhc------CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccch
Confidence 3444444444332 3899999999999999999997555799999999999999999999988643333333332
Q ss_pred CCCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCC
Q 016981 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCS 298 (379)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (379)
..+ ..++||+|+++-...-+ ..+...+.+.|||||+++++.+..+ -
T Consensus 223 ~~~-~~~~~DvIVANILA~vl---~~La~~~~~~lkpgg~lIlSGIl~~------------------------------q 268 (300)
T COG2264 223 EVP-ENGPFDVIVANILAEVL---VELAPDIKRLLKPGGRLILSGILED------------------------------Q 268 (300)
T ss_pred hhc-ccCcccEEEehhhHHHH---HHHHHHHHHHcCCCceEEEEeehHh------------------------------H
Confidence 222 23689999998743333 6889999999999999999985321 1
Q ss_pred HHHHHHHHHhCCCceeEEE
Q 016981 299 TADYVKLLQSLSLEDIKAE 317 (379)
Q Consensus 299 ~~~~~~~l~~aGF~~v~~~ 317 (379)
.+.+.+.++++||+++.+.
T Consensus 269 ~~~V~~a~~~~gf~v~~~~ 287 (300)
T COG2264 269 AESVAEAYEQAGFEVVEVL 287 (300)
T ss_pred HHHHHHHHHhCCCeEeEEE
Confidence 4567888999999998875
No 46
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.71 E-value=2.3e-16 Score=145.86 Aligned_cols=136 Identities=18% Similarity=0.279 Sum_probs=108.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.++++++..++ ++.+...|+...++ +++||+|++..+++|
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~-g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALL-GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASI-QEEYDFILSTVVLMF 196 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccc-cCCccEEEEcchhhh
Confidence 569999999999999999987 78999999999999999999988776 68888889877655 678999999999999
Q ss_pred CC--CHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEE
Q 016981 239 MP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (379)
Q Consensus 239 ~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 316 (379)
++ +...+++++.++|+|||++++.........+.. ...+..+++++++++++ +|+++..
T Consensus 197 l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~-----------------~p~~~~~~~~el~~~~~--~~~i~~~ 257 (287)
T PRK12335 197 LNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCP-----------------MPFSFTFKEGELKDYYQ--DWEIVKY 257 (287)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCC-----------------CCCCcccCHHHHHHHhC--CCEEEEE
Confidence 85 457899999999999999777653322211100 01123468899999985 4888766
Q ss_pred E
Q 016981 317 E 317 (379)
Q Consensus 317 ~ 317 (379)
.
T Consensus 258 ~ 258 (287)
T PRK12335 258 N 258 (287)
T ss_pred e
Confidence 3
No 47
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.70 E-value=8.6e-16 Score=137.14 Aligned_cols=152 Identities=24% Similarity=0.304 Sum_probs=116.2
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCC-CCcccEEEecccc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP-DGQFDLVWSMESG 236 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~V~~~~~l 236 (379)
++.+|||+|||+|.++..+++. +.+++|+|+++.+++.+++++...+. .++.+...|+.+.+.. .++||+|++..++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL-GANVTGIDASEENIEVAKLHAKKDPL-LKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 3789999999999999988876 66899999999999999998877654 2688888998776543 3789999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHH-----HHHHHhhc--cCCCCCCCHHHHHHHHHhC
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQE-----LLKKICDA--YYLPAWCSTADYVKLLQSL 309 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~--~~~~~~~~~~~~~~~l~~a 309 (379)
+|+.++..+++++.++|+|||.+++....... ...... +....... .....+.+.+++.++++++
T Consensus 123 ~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 194 (224)
T TIGR01983 123 EHVPDPQAFIRACAQLLKPGGILFFSTINRTP--------KSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESA 194 (224)
T ss_pred HhCCCHHHHHHHHHHhcCCCcEEEEEecCCCc--------hHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHc
Confidence 99999999999999999999999987653211 011111 01111000 1112356889999999999
Q ss_pred CCceeEEEec
Q 016981 310 SLEDIKAEDW 319 (379)
Q Consensus 310 GF~~v~~~~~ 319 (379)
||+++++...
T Consensus 195 G~~i~~~~~~ 204 (224)
T TIGR01983 195 GLRVKDVKGL 204 (224)
T ss_pred CCeeeeeeeE
Confidence 9999987643
No 48
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.70 E-value=3.3e-16 Score=132.27 Aligned_cols=155 Identities=25% Similarity=0.396 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 016981 137 AQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVG 215 (379)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~ 215 (379)
...+-..+++..+++.. ..+|.|+|||+|..+..|++++ ++.++|+|.|+.|++.|+++. ++++|..+
T Consensus 14 eRtRPa~dLla~Vp~~~-----~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~a 82 (257)
T COG4106 14 ERTRPARDLLARVPLER-----PRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------PDATFEEA 82 (257)
T ss_pred hccCcHHHHHhhCCccc-----cceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------CCCceecc
Confidence 33445667777777665 8999999999999999999999 889999999999999998865 68999999
Q ss_pred cCCCCCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHh-------
Q 016981 216 DALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKIC------- 288 (379)
Q Consensus 216 d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 288 (379)
|+.... ++..+|+++++-+|++++|-.++|..+...|.|||+|.+.....-+. . .+..+....
T Consensus 83 Dl~~w~-p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~de-----p----sH~~mr~~A~~~p~~~ 152 (257)
T COG4106 83 DLRTWK-PEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDE-----P----SHRLMRETADEAPFAQ 152 (257)
T ss_pred cHhhcC-CCCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCccCc-----h----hHHHHHHHHhcCchhh
Confidence 998873 36789999999999999999999999999999999999976432211 1 111222111
Q ss_pred --hc--cCCCCCCCHHHHHHHHHhCCCc
Q 016981 289 --DA--YYLPAWCSTADYVKLLQSLSLE 312 (379)
Q Consensus 289 --~~--~~~~~~~~~~~~~~~l~~aGF~ 312 (379)
.. .......++..|-++|...+-+
T Consensus 153 ~l~~~~~~r~~v~s~a~Yy~lLa~~~~r 180 (257)
T COG4106 153 ELGGRGLTRAPLPSPAAYYELLAPLACR 180 (257)
T ss_pred hhCccccccCCCCCHHHHHHHhCcccce
Confidence 11 1122456899999999887654
No 49
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.69 E-value=1.9e-15 Score=129.78 Aligned_cols=99 Identities=20% Similarity=0.205 Sum_probs=85.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
+.+|||+|||+|.++..++... +.+|+|+|+|+.|++.++++++..++ ++++++++|+.+++ ..++||+|++..
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~-~~i~~i~~d~~~~~-~~~~fD~I~s~~--- 117 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL-NNVEIVNGRAEDFQ-HEEQFDVITSRA--- 117 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC-CCeEEEecchhhcc-ccCCccEEEehh---
Confidence 7899999999999999998765 57899999999999999999988887 47999999998864 357899999875
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 238 HMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+.+...+++.+.++|+|||.+++..
T Consensus 118 -~~~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 118 -LASLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred -hhCHHHHHHHHHHhcCCCCEEEEEc
Confidence 3455778899999999999998864
No 50
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.68 E-value=3.1e-15 Score=129.65 Aligned_cols=125 Identities=17% Similarity=0.233 Sum_probs=101.9
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
+.+|||+|||+|.++..+++.. +.+|+++|+|+.+++.|++++...++ .++++..+|+.. ++ .++||+|++.....
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~-~~i~~~~~d~~~-~~-~~~~D~v~~~~~~~ 108 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC-GNIDIIPGEAPI-EL-PGKADAIFIGGSGG 108 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-CCeEEEecCchh-hc-CcCCCEEEECCCcc
Confidence 7899999999999999999876 57999999999999999999988776 478999888742 33 36799999876654
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEE
Q 016981 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 317 (379)
+ ...+++.+.++|+|||++++..... .+.+++.++++++||+.+++.
T Consensus 109 ~---~~~~l~~~~~~Lk~gG~lv~~~~~~------------------------------~~~~~~~~~l~~~g~~~~~~~ 155 (187)
T PRK08287 109 N---LTAIIDWSLAHLHPGGRLVLTFILL------------------------------ENLHSALAHLEKCGVSELDCV 155 (187)
T ss_pred C---HHHHHHHHHHhcCCCeEEEEEEecH------------------------------hhHHHHHHHHHHCCCCcceEE
Confidence 4 4778999999999999998865211 135677889999999887765
Q ss_pred ec
Q 016981 318 DW 319 (379)
Q Consensus 318 ~~ 319 (379)
.+
T Consensus 156 ~~ 157 (187)
T PRK08287 156 QL 157 (187)
T ss_pred EE
Confidence 44
No 51
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.67 E-value=5.4e-15 Score=127.27 Aligned_cols=131 Identities=16% Similarity=0.251 Sum_probs=107.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++++..+. ++.+..+|..+.. .++||+|+++..+++
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGK-GKCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV--RGKFDVILFNPPYLP 94 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc--CCcccEEEECCCCCC
Confidence 678999999999999999987 45999999999999999999987764 6888999986643 458999999988776
Q ss_pred CCC---------------------HHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCC
Q 016981 239 MPD---------------------KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWC 297 (379)
Q Consensus 239 ~~~---------------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (379)
.++ ...+++++.++|||||++++......
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~------------------------------ 144 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN------------------------------ 144 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC------------------------------
Confidence 643 24679999999999999999773211
Q ss_pred CHHHHHHHHHhCCCceeEEEecCCCcc
Q 016981 298 STADYVKLLQSLSLEDIKAEDWSQNVA 324 (379)
Q Consensus 298 ~~~~~~~~l~~aGF~~v~~~~~~~~~~ 324 (379)
...++.+.|+++||....+..+..+..
T Consensus 145 ~~~~~~~~l~~~gf~~~~~~~~~~~~~ 171 (179)
T TIGR00537 145 GEPDTFDKLDERGFRYEIVAERGLFFE 171 (179)
T ss_pred ChHHHHHHHHhCCCeEEEEEEeecCce
Confidence 256788999999999988877665543
No 52
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.67 E-value=1e-16 Score=124.59 Aligned_cols=94 Identities=36% Similarity=0.648 Sum_probs=80.7
Q ss_pred EEEeCCcccHHHHHHHHHc--C--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecc-cc
Q 016981 162 VVDVGCGIGGSSRYLAKKF--G--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME-SG 236 (379)
Q Consensus 162 vLDiGcGtG~~~~~l~~~~--~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~-~l 236 (379)
|||+|||+|..+..+++.+ + .+++|+|+|+.|++.++++....+. ++++++.|+.++++.+++||+|++.. ++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence 7999999999999999886 3 7999999999999999999987654 79999999999887788999999954 59
Q ss_pred CCCCC--HHHHHHHHHHhcCCCC
Q 016981 237 EHMPD--KSKFVSELARVTAPAG 257 (379)
Q Consensus 237 ~~~~~--~~~~l~~~~r~LkpgG 257 (379)
+|+.+ ...+++++.++|||||
T Consensus 79 ~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCC
Confidence 99864 4789999999999998
No 53
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.67 E-value=1.5e-17 Score=128.70 Aligned_cols=96 Identities=29% Similarity=0.438 Sum_probs=66.7
Q ss_pred EEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--CCCCcccEEEeccccCCC
Q 016981 163 VDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSMESGEHM 239 (379)
Q Consensus 163 LDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~V~~~~~l~~~ 239 (379)
||+|||+|.++..+++.+ ..+++|+|+|+.|++.+++++...+. .+......+..+.. ...++||+|++..+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN-DNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-cceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 799999999999999986 67999999999999999999888653 23444444433331 123599999999999999
Q ss_pred CCHHHHHHHHHHhcCCCCEE
Q 016981 240 PDKSKFVSELARVTAPAGTI 259 (379)
Q Consensus 240 ~~~~~~l~~~~r~LkpgG~l 259 (379)
+++..++++++++|||||+|
T Consensus 80 ~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999986
No 54
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.67 E-value=1.5e-15 Score=132.98 Aligned_cols=114 Identities=21% Similarity=0.336 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 016981 137 AQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVG 215 (379)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~ 215 (379)
.....+.+.+..++ ++.+|||+|||+|.++..+++.. +.+++|+|+|+.|++.|+++. +++.+.++
T Consensus 29 ~~~~~~~~~l~~~~-------~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~------~~~~~~~~ 95 (204)
T TIGR03587 29 AKLAMFARALNRLP-------KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL------PNINIIQG 95 (204)
T ss_pred HHHHHHHHHHHhcC-------CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC------CCCcEEEe
Confidence 33445555555432 36789999999999999998875 679999999999999998764 35778889
Q ss_pred cCCCCCCCCCcccEEEeccccCCCC--CHHHHHHHHHHhcCCCCEEEEEeccC
Q 016981 216 DALQQPFPDGQFDLVWSMESGEHMP--DKSKFVSELARVTAPAGTIIIVTWCH 266 (379)
Q Consensus 216 d~~~~~~~~~~fD~V~~~~~l~~~~--~~~~~l~~~~r~LkpgG~l~i~~~~~ 266 (379)
|+.+ ++++++||+|++..+++|++ +..++++++.+++ ++.+++.++..
T Consensus 96 d~~~-~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~ 145 (204)
T TIGR03587 96 SLFD-PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYN 145 (204)
T ss_pred eccC-CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence 9887 88889999999999999995 3478899999987 57888888644
No 55
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.67 E-value=4.8e-16 Score=131.04 Aligned_cols=136 Identities=19% Similarity=0.294 Sum_probs=98.3
Q ss_pred EEEeCCHHHHHHHHHHHHHcC--CCCCeEEEEccCCCCCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEE
Q 016981 185 QGITLSPVQAQRANALAAARG--LADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (379)
Q Consensus 185 ~gvD~s~~~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~ 262 (379)
+|+|+|+.|++.|+++.+..+ ...+++++++|++++|+++++||+|++..++++++|+.+++++++|+|||||.+++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 489999999999988765322 224799999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCCccccchHHHH-------HHHHHhhcc-CC----CCCCCHHHHHHHHHhCCCceeEEEecCC
Q 016981 263 TWCHRDLAPSEESLQPWEQE-------LLKKICDAY-YL----PAWCSTADYVKLLQSLSLEDIKAEDWSQ 321 (379)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~----~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 321 (379)
++..+... ....+..+... .+......+ +. ..+.+++++.++|+++||+.+.......
T Consensus 81 d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~ 150 (160)
T PLN02232 81 DFNKSNQS-VTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISG 150 (160)
T ss_pred ECCCCChH-HHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcc
Confidence 98754321 00000000000 000000000 11 1356899999999999999987765443
No 56
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.65 E-value=1.4e-14 Score=127.51 Aligned_cols=141 Identities=18% Similarity=0.185 Sum_probs=104.3
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc-----------CCCCCeEEEEccCCCCCCC-CCc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR-----------GLADKVSFQVGDALQQPFP-DGQ 226 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~-----------~~~~~i~~~~~d~~~~~~~-~~~ 226 (379)
+.+|||+|||.|..+..|+++ |.+|+|+|+|+.+++.+.+..... .-..++++.++|+.+++.. .+.
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~-G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~ 113 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQ-GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGP 113 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCC
Confidence 679999999999999999987 899999999999999864422110 0023689999999887532 467
Q ss_pred ccEEEeccccCCCCC--HHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHH
Q 016981 227 FDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVK 304 (379)
Q Consensus 227 fD~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (379)
||.|+-..+++|++. ...+++.+.++|||||++++..+....... .+-+...+++++.+
T Consensus 114 fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~-------------------~gpp~~~~~~eL~~ 174 (213)
T TIGR03840 114 VDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEM-------------------AGPPFSVSPAEVEA 174 (213)
T ss_pred cCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCC-------------------CCcCCCCCHHHHHH
Confidence 999999999999953 367899999999999998887765432110 01122458899998
Q ss_pred HHHhCCCceeEEEecC
Q 016981 305 LLQSLSLEDIKAEDWS 320 (379)
Q Consensus 305 ~l~~aGF~~v~~~~~~ 320 (379)
++. .+|++...+...
T Consensus 175 ~f~-~~~~i~~~~~~~ 189 (213)
T TIGR03840 175 LYG-GHYEIELLESRD 189 (213)
T ss_pred Hhc-CCceEEEEeecc
Confidence 886 357666655443
No 57
>PRK06202 hypothetical protein; Provisional
Probab=99.65 E-value=2.1e-15 Score=135.32 Aligned_cols=146 Identities=17% Similarity=0.189 Sum_probs=104.4
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEe
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF-----GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWS 232 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~ 232 (379)
++.+|||+|||+|.++..+++.. +.+|+|+|+|+.|++.|+++... .++.+...+...++.++++||+|++
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~----~~~~~~~~~~~~l~~~~~~fD~V~~ 135 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR----PGVTFRQAVSDELVAEGERFDVVTS 135 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc----CCCeEEEEecccccccCCCccEEEE
Confidence 37899999999999998887642 35999999999999999887543 3567777777777767789999999
Q ss_pred ccccCCCCCH--HHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHh-hc-------cCCCCCCCHHHH
Q 016981 233 MESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKIC-DA-------YYLPAWCSTADY 302 (379)
Q Consensus 233 ~~~l~~~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~ 302 (379)
+.+++|+++. ..++++++++++ |.+++.++..... .+.... ....... .. .....+++++++
T Consensus 136 ~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~-----~~~~~~-~~~~~~~~~~~~~~d~~~s~~~~~~~~el 207 (232)
T PRK06202 136 NHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRL-----AYALFW-AGTRLLSRSSFVHTDGLLSVRRSYTPAEL 207 (232)
T ss_pred CCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHH-----HHHHHH-HHHHHhccCceeeccchHHHHhhcCHHHH
Confidence 9999999875 579999999998 6666666543310 000000 0000000 00 011246799999
Q ss_pred HHHHHhCCCceeEE
Q 016981 303 VKLLQSLSLEDIKA 316 (379)
Q Consensus 303 ~~~l~~aGF~~v~~ 316 (379)
.+++++ ||++...
T Consensus 208 ~~ll~~-Gf~~~~~ 220 (232)
T PRK06202 208 AALAPQ-GWRVERQ 220 (232)
T ss_pred HHHhhC-CCeEEec
Confidence 999999 9997755
No 58
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.65 E-value=3.8e-15 Score=130.85 Aligned_cols=112 Identities=19% Similarity=0.211 Sum_probs=93.1
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 218 (379)
+...+++.+...+ +.+|||+|||+|..+..+++.. +++|+++|+++.+++.|+++++..++..++.+..+|..
T Consensus 60 ~~~~~~~~l~~~~-----~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~ 134 (205)
T PRK13944 60 MVAMMCELIEPRP-----GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGK 134 (205)
T ss_pred HHHHHHHhcCCCC-----CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcc
Confidence 4555666665544 7899999999999999998876 36999999999999999999998887667999999987
Q ss_pred CCCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+.....++||+|++..++.+++ .++.+.|+|||+|++..
T Consensus 135 ~~~~~~~~fD~Ii~~~~~~~~~------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 135 RGLEKHAPFDAIIVTAAASTIP------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred cCCccCCCccEEEEccCcchhh------HHHHHhcCcCcEEEEEE
Confidence 7544457899999998887764 46889999999998854
No 59
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.64 E-value=2.4e-15 Score=149.15 Aligned_cols=140 Identities=19% Similarity=0.270 Sum_probs=108.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC--CCCCCCcccEEEecccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ--QPFPDGQFDLVWSMESG 236 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~fD~V~~~~~l 236 (379)
+.+|||+|||+|.++..+++. +.+|+|+|+++.|++.+++... ..+++.++++|+.. +++++++||+|++..++
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~~~~---~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l 113 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESING---HYKNVKFMCADVTSPDLNISDGSVDLIFSNWLL 113 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHhc---cCCceEEEEecccccccCCCCCCEEEEehhhhH
Confidence 679999999999999999987 5799999999999998765332 23579999999863 56778899999999999
Q ss_pred CCCCC--HHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcee
Q 016981 237 EHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDI 314 (379)
Q Consensus 237 ~~~~~--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 314 (379)
+|+++ ...++++++++|||||++++.+.+......... ......+.+...|.+++.++||..+
T Consensus 114 ~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~f~~~~~~~~ 178 (475)
T PLN02336 114 MYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKR---------------KNNPTHYREPRFYTKVFKECHTRDE 178 (475)
T ss_pred HhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccc---------------cCCCCeecChHHHHHHHHHheeccC
Confidence 99987 478999999999999999998854322110000 0011113357789999999999876
Q ss_pred EEE
Q 016981 315 KAE 317 (379)
Q Consensus 315 ~~~ 317 (379)
...
T Consensus 179 ~~~ 181 (475)
T PLN02336 179 DGN 181 (475)
T ss_pred CCC
Confidence 543
No 60
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.64 E-value=9e-15 Score=117.75 Aligned_cols=112 Identities=20% Similarity=0.194 Sum_probs=90.5
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC-C
Q 016981 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-Q 220 (379)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~ 220 (379)
..+++.+.+.. +.+|||+|||+|.++..+++.. +.+|+++|+|+.+++.++++++..+. .++.+...|+.. .
T Consensus 9 ~~~~~~~~~~~-----~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~ 82 (124)
T TIGR02469 9 ALTLSKLRLRP-----GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV-SNIVIVEGDAPEAL 82 (124)
T ss_pred HHHHHHcCCCC-----CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC-CceEEEeccccccC
Confidence 33455555443 6799999999999999999986 57999999999999999999888776 378898888765 2
Q ss_pred CCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+...++||+|++.....+ ..++++++++.|||||++++..
T Consensus 83 ~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 83 EDSLPEPDRVFIGGSGGL---LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred hhhcCCCCEEEECCcchh---HHHHHHHHHHHcCCCCEEEEEe
Confidence 333468999998765443 3689999999999999999864
No 61
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.64 E-value=2.2e-15 Score=132.03 Aligned_cols=104 Identities=24% Similarity=0.303 Sum_probs=88.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccC-CCCC--CCCCcccEEEecc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA-LQQP--FPDGQFDLVWSME 234 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~--~~~~~fD~V~~~~ 234 (379)
+.+|||+|||+|..+..+++.. +.+|+|+|+|+.+++.|++++...++ .++.++++|+ +.++ +++++||+|+++.
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 7899999999999999999876 56899999999999999999988776 5799999999 6665 6678999999876
Q ss_pred ccCCCC--------CHHHHHHHHHHhcCCCCEEEEEe
Q 016981 235 SGEHMP--------DKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 235 ~l~~~~--------~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
...+.. ....++++++++|||||.+++..
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 543321 13678999999999999999875
No 62
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.64 E-value=9e-15 Score=127.54 Aligned_cols=145 Identities=22% Similarity=0.308 Sum_probs=103.9
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC-C-CCCCCcccEEEecccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-Q-PFPDGQFDLVWSMESG 236 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~fD~V~~~~~l 236 (379)
+.+|||+|||+|.++..+++..+..++|+|+|+.+++.+++ .+++++.+|+.+ + ++++++||+|+++.++
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~--------~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l 85 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA--------RGVNVIQGDLDEGLEAFPDKSFDYVILSQTL 85 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH--------cCCeEEEEEhhhcccccCCCCcCEEEEhhHh
Confidence 67999999999999999987666789999999999998864 247788888875 4 4667899999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHH-Hh---h----ccC---CCCCCCHHHHHHH
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKK-IC---D----AYY---LPAWCSTADYVKL 305 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~----~~~---~~~~~~~~~~~~~ 305 (379)
+|++++..+++++.|.+++ +++...... .... ...+... .. . .+. ...+++.+++.++
T Consensus 86 ~~~~d~~~~l~e~~r~~~~---~ii~~p~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l 154 (194)
T TIGR02081 86 QATRNPEEILDEMLRVGRH---AIVSFPNFG-------YWRV-RWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDL 154 (194)
T ss_pred HcCcCHHHHHHHHHHhCCe---EEEEcCChh-------HHHH-HHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHH
Confidence 9999999999999887654 333321100 0000 0000000 00 0 000 1136799999999
Q ss_pred HHhCCCceeEEEecCCC
Q 016981 306 LQSLSLEDIKAEDWSQN 322 (379)
Q Consensus 306 l~~aGF~~v~~~~~~~~ 322 (379)
++++||+++....+...
T Consensus 155 l~~~Gf~v~~~~~~~~~ 171 (194)
T TIGR02081 155 CGELNLRILDRAAFDVD 171 (194)
T ss_pred HHHCCCEEEEEEEeccc
Confidence 99999999998776443
No 63
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.64 E-value=6.9e-16 Score=141.12 Aligned_cols=138 Identities=22% Similarity=0.319 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 016981 136 AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVG 215 (379)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~ 215 (379)
....++.-++++.+.. ++.+|||+|||||.+++..++....+|+|+|++|.+++.|++++..+++..++.+.
T Consensus 145 H~TT~lcl~~l~~~~~------~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~-- 216 (295)
T PF06325_consen 145 HPTTRLCLELLEKYVK------PGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS-- 216 (295)
T ss_dssp CHHHHHHHHHHHHHSS------TTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--
T ss_pred CHHHHHHHHHHHHhcc------CCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--
Confidence 3445565566665532 37899999999999999999875458999999999999999999999997766543
Q ss_pred cCCCCCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCC
Q 016981 216 DALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPA 295 (379)
Q Consensus 216 d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (379)
...+ ...++||+|+++....-+ ..++..+.++|+|||+++++.+...
T Consensus 217 ~~~~--~~~~~~dlvvANI~~~vL---~~l~~~~~~~l~~~G~lIlSGIl~~---------------------------- 263 (295)
T PF06325_consen 217 LSED--LVEGKFDLVVANILADVL---LELAPDIASLLKPGGYLILSGILEE---------------------------- 263 (295)
T ss_dssp CTSC--TCCS-EEEEEEES-HHHH---HHHHHHCHHHEEEEEEEEEEEEEGG----------------------------
T ss_pred Eecc--cccccCCEEEECCCHHHH---HHHHHHHHHhhCCCCEEEEccccHH----------------------------
Confidence 2222 235899999998655444 6788889999999999999986432
Q ss_pred CCCHHHHHHHHHhCCCceeEEE
Q 016981 296 WCSTADYVKLLQSLSLEDIKAE 317 (379)
Q Consensus 296 ~~~~~~~~~~l~~aGF~~v~~~ 317 (379)
..+.+.+.+++ ||+.++..
T Consensus 264 --~~~~v~~a~~~-g~~~~~~~ 282 (295)
T PF06325_consen 264 --QEDEVIEAYKQ-GFELVEER 282 (295)
T ss_dssp --GHHHHHHHHHT-TEEEEEEE
T ss_pred --HHHHHHHHHHC-CCEEEEEE
Confidence 24567788876 99987765
No 64
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.63 E-value=5.8e-15 Score=126.21 Aligned_cols=104 Identities=28% Similarity=0.540 Sum_probs=87.4
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+.++||+|||.|+.+.+|+++ |..|+++|.|+..++.+++.++..++ .++..+.|+.+..++ +.||+|++..+++|
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~-G~~VtAvD~s~~al~~l~~~a~~~~l--~i~~~~~Dl~~~~~~-~~yD~I~st~v~~f 106 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQ-GFDVTAVDISPVALEKLQRLAEEEGL--DIRTRVADLNDFDFP-EEYDFIVSTVVFMF 106 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHT-T-EEEEEESSHHHHHHHHHHHHHTT---TEEEEE-BGCCBS-T-TTEEEEEEESSGGG
T ss_pred CCcEEEcCCCCcHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHhhcCc--eeEEEEecchhcccc-CCcCEEEEEEEecc
Confidence 789999999999999999998 89999999999999999999888887 499999999888764 78999999888988
Q ss_pred CCC--HHHHHHHHHHhcCCCCEEEEEeccC
Q 016981 239 MPD--KSKFVSELARVTAPAGTIIIVTWCH 266 (379)
Q Consensus 239 ~~~--~~~~l~~~~r~LkpgG~l~i~~~~~ 266 (379)
++. ...+++.+...++|||++++..+..
T Consensus 107 L~~~~~~~i~~~m~~~~~pGG~~li~~~~~ 136 (192)
T PF03848_consen 107 LQRELRPQIIENMKAATKPGGYNLIVTFME 136 (192)
T ss_dssp S-GGGHHHHHHHHHHTEEEEEEEEEEEEB-
T ss_pred CCHHHHHHHHHHHHhhcCCcEEEEEEEecc
Confidence 853 3789999999999999999876543
No 65
>PRK06922 hypothetical protein; Provisional
Probab=99.62 E-value=5.5e-15 Score=145.93 Aligned_cols=106 Identities=21% Similarity=0.201 Sum_probs=92.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--CCCCcccEEEeccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSMES 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~V~~~~~ 235 (379)
+.+|||+|||+|.++..+++.+ +.+|+|+|+|+.|++.|+++....+ .++.++++|+.+++ +++++||+|+++.+
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 7899999999999999998877 6899999999999999998876554 36888999998876 77899999999988
Q ss_pred cCCCC-------------CHHHHHHHHHHhcCCCCEEEEEeccC
Q 016981 236 GEHMP-------------DKSKFVSELARVTAPAGTIIIVTWCH 266 (379)
Q Consensus 236 l~~~~-------------~~~~~l~~~~r~LkpgG~l~i~~~~~ 266 (379)
++++. +...++++++++|||||++++.+...
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~ 540 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIM 540 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCcc
Confidence 88652 45789999999999999999988543
No 66
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.62 E-value=3e-14 Score=124.60 Aligned_cols=128 Identities=13% Similarity=0.199 Sum_probs=101.3
Q ss_pred CCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-CCCCCcccEEEeccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLVWSMES 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~V~~~~~ 235 (379)
+.+|||+|||+|.++..+++.. +.+|+++|+++.+++.+++++...++..++.+..+|+.+. +...+.||+|++..
T Consensus 41 ~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~- 119 (198)
T PRK00377 41 GDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG- 119 (198)
T ss_pred cCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC-
Confidence 8899999999999999998764 4689999999999999999999888667899999998764 33346899999854
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeE
Q 016981 236 GEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIK 315 (379)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 315 (379)
...+...+++++.++|||||++++.... ..+..+..+.|++.|| .++
T Consensus 120 --~~~~~~~~l~~~~~~LkpgG~lv~~~~~------------------------------~~~~~~~~~~l~~~g~-~~~ 166 (198)
T PRK00377 120 --GSEKLKEIISASWEIIKKGGRIVIDAIL------------------------------LETVNNALSALENIGF-NLE 166 (198)
T ss_pred --CcccHHHHHHHHHHHcCCCcEEEEEeec------------------------------HHHHHHHHHHHHHcCC-CeE
Confidence 3356788999999999999999874311 0134567788999999 445
Q ss_pred EEecC
Q 016981 316 AEDWS 320 (379)
Q Consensus 316 ~~~~~ 320 (379)
+..+.
T Consensus 167 ~~~~~ 171 (198)
T PRK00377 167 ITEVI 171 (198)
T ss_pred EEEEe
Confidence 54443
No 67
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.62 E-value=5.2e-15 Score=134.75 Aligned_cols=105 Identities=20% Similarity=0.322 Sum_probs=86.0
Q ss_pred CCEEEEeCCcccH----HHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHH----HcCC------------------
Q 016981 159 PKNVVDVGCGIGG----SSRYLAKKF------GAKCQGITLSPVQAQRANALAA----ARGL------------------ 206 (379)
Q Consensus 159 ~~~vLDiGcGtG~----~~~~l~~~~------~~~v~gvD~s~~~~~~a~~~~~----~~~~------------------ 206 (379)
+.+|+|+|||||. +++.+++.. +.+|+|+|+|+.|++.|++..- ..++
T Consensus 100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v 179 (264)
T smart00138 100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRV 179 (264)
T ss_pred CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEE
Confidence 6899999999996 566666643 2589999999999999997531 0111
Q ss_pred ----CCCeEEEEccCCCCCCCCCcccEEEeccccCCCCCH--HHHHHHHHHhcCCCCEEEEEe
Q 016981 207 ----ADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 207 ----~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~i~~ 263 (379)
..++.|.+.|+.+.+++.++||+|+|.++++|++++ .+++++++++|+|||+|++..
T Consensus 180 ~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 180 KPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred ChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 146899999999987778899999999999999644 589999999999999999864
No 68
>PRK04266 fibrillarin; Provisional
Probab=99.61 E-value=2.6e-14 Score=126.74 Aligned_cols=138 Identities=11% Similarity=0.163 Sum_probs=98.6
Q ss_pred HcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC----CC
Q 016981 148 FAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ----PF 222 (379)
Q Consensus 148 ~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~ 222 (379)
.+++.+ +.+|||+|||+|.++..+++.. ..+|+|+|+++.|++.+.++++.. .|+.++.+|+... ++
T Consensus 67 ~l~i~~-----g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l 138 (226)
T PRK04266 67 NFPIKK-----GSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHV 138 (226)
T ss_pred hCCCCC-----CCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhc
Confidence 455554 8999999999999999999986 468999999999999887776543 4789999998652 22
Q ss_pred CCCcccEEEeccccCCCCCH---HHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCH
Q 016981 223 PDGQFDLVWSMESGEHMPDK---SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCST 299 (379)
Q Consensus 223 ~~~~fD~V~~~~~l~~~~~~---~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (379)
.++||+|++. +.++ ..++++++++|||||+++++..... ......+ .. ..
T Consensus 139 -~~~~D~i~~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~----~d~~~~~--~~---------------~~ 191 (226)
T PRK04266 139 -VEKVDVIYQD-----VAQPNQAEIAIDNAEFFLKDGGYLLLAIKARS----IDVTKDP--KE---------------IF 191 (226)
T ss_pred -cccCCEEEEC-----CCChhHHHHHHHHHHHhcCCCcEEEEEEeccc----ccCcCCH--HH---------------HH
Confidence 3569999853 3333 3568999999999999999522110 0000000 00 11
Q ss_pred HHHHHHHHhCCCceeEEEecC
Q 016981 300 ADYVKLLQSLSLEDIKAEDWS 320 (379)
Q Consensus 300 ~~~~~~l~~aGF~~v~~~~~~ 320 (379)
++..++|+++||+.++..+..
T Consensus 192 ~~~~~~l~~aGF~~i~~~~l~ 212 (226)
T PRK04266 192 KEEIRKLEEGGFEILEVVDLE 212 (226)
T ss_pred HHHHHHHHHcCCeEEEEEcCC
Confidence 334589999999999887653
No 69
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.61 E-value=3.9e-15 Score=125.64 Aligned_cols=131 Identities=22% Similarity=0.346 Sum_probs=96.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
..++||+|||.|.++..|+.+ ..+++++|+|+.+++.|+++++.. +++++.+.|+... .|+++||+|+++.++++
T Consensus 44 y~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAGL---PHVEWIQADVPEF-WPEGRFDLIVLSEVLYY 118 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT----SS-EEEEEEES-GGG
T ss_pred cceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCC-CCCCCeeEEEEehHhHc
Confidence 689999999999999999998 469999999999999999998653 5899999999765 46799999999999999
Q ss_pred CCCH---HHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeE
Q 016981 239 MPDK---SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIK 315 (379)
Q Consensus 239 ~~~~---~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 315 (379)
+.+. ..+++.+...|+|||.|++..+.. ..+..++. .+..+.+.++|.+. |..|+
T Consensus 119 L~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd-------------------~~c~~wgh--~~ga~tv~~~~~~~-~~~~~ 176 (201)
T PF05401_consen 119 LDDAEDLRAALDRLVAALAPGGHLVFGHARD-------------------ANCRRWGH--AAGAETVLEMLQEH-LTEVE 176 (201)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H-------------------HHHHHTT---S--HHHHHHHHHHH-SEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEEEEecC-------------------CcccccCc--ccchHHHHHHHHHH-hhhee
Confidence 9763 578999999999999999987421 12222332 23688888888875 44444
Q ss_pred E
Q 016981 316 A 316 (379)
Q Consensus 316 ~ 316 (379)
.
T Consensus 177 ~ 177 (201)
T PF05401_consen 177 R 177 (201)
T ss_dssp E
T ss_pred E
Confidence 3
No 70
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.61 E-value=1.7e-14 Score=118.56 Aligned_cols=150 Identities=23% Similarity=0.378 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE
Q 016981 136 AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214 (379)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~ 214 (379)
.++.++++.+.....+.. -.+...+|||+|||.|.+...|++.. ....+|+|.|+.+++.|+..+++.+.++.|+|.+
T Consensus 46 ~ae~riv~wl~d~~~~~r-v~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q 124 (227)
T KOG1271|consen 46 DAEERIVDWLKDLIVISR-VSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQ 124 (227)
T ss_pred cHHHHHHHHHHhhhhhhh-hcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEE
Confidence 344556666555544111 11124499999999999999999876 4569999999999999999999999987799999
Q ss_pred ccCCCCCCCCCcccEEEeccccCCC---CC-----HHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHH
Q 016981 215 GDALQQPFPDGQFDLVWSMESGEHM---PD-----KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKK 286 (379)
Q Consensus 215 ~d~~~~~~~~~~fD~V~~~~~l~~~---~~-----~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (379)
.|+.+..+..++||+|+--.++..+ ++ +...+..+.++|+|||+++|..-
T Consensus 125 ~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC---------------------- 182 (227)
T KOG1271|consen 125 LDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC---------------------- 182 (227)
T ss_pred eeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEec----------------------
Confidence 9999877778999999977766554 22 24578889999999999999762
Q ss_pred HhhccCCCCCCCHHHHHHHHHhCCCceeEEE
Q 016981 287 ICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (379)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 317 (379)
-+|.+++.+.++.-||+.....
T Consensus 183 ---------N~T~dELv~~f~~~~f~~~~tv 204 (227)
T KOG1271|consen 183 ---------NFTKDELVEEFENFNFEYLSTV 204 (227)
T ss_pred ---------CccHHHHHHHHhcCCeEEEEee
Confidence 1378899999999999877664
No 71
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.60 E-value=4.1e-14 Score=124.97 Aligned_cols=141 Identities=18% Similarity=0.160 Sum_probs=103.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc-----------CCCCCeEEEEccCCCCCCC-CCc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR-----------GLADKVSFQVGDALQQPFP-DGQ 226 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~-----------~~~~~i~~~~~d~~~~~~~-~~~ 226 (379)
+.+|||+|||.|..+..|+++ |.+|+|+|+|+.+++.+.+..... -...++++.++|+.+++.. .+.
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~-G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~ 116 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQ-GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLAD 116 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhC-CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCC
Confidence 679999999999999999987 899999999999999864321100 0124689999999887432 368
Q ss_pred ccEEEeccccCCCCC--HHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHH
Q 016981 227 FDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVK 304 (379)
Q Consensus 227 fD~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (379)
||+|+-..+++|++. ..++++.+.++|||||.+++.......... .+-+...+++++.+
T Consensus 117 fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~-------------------~gPp~~~~~~el~~ 177 (218)
T PRK13255 117 VDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEEL-------------------AGPPFSVSDEEVEA 177 (218)
T ss_pred eeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccC-------------------CCCCCCCCHHHHHH
Confidence 999999999999963 478999999999999986665543321100 01122458999999
Q ss_pred HHHhCCCceeEEEecC
Q 016981 305 LLQSLSLEDIKAEDWS 320 (379)
Q Consensus 305 ~l~~aGF~~v~~~~~~ 320 (379)
++. -+|++...+...
T Consensus 178 ~~~-~~~~i~~~~~~~ 192 (218)
T PRK13255 178 LYA-GCFEIELLERQD 192 (218)
T ss_pred Hhc-CCceEEEeeecc
Confidence 885 337776665444
No 72
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.60 E-value=3.4e-15 Score=127.17 Aligned_cols=156 Identities=22% Similarity=0.290 Sum_probs=113.7
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
.++.+++..+.... -.++||+|||||..+..+-.. ..+++|+|+|.+|++.|.++ |+.+ .+.+.|+..
T Consensus 112 ~~l~emI~~~~~g~-----F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eK----g~YD--~L~~Aea~~ 179 (287)
T COG4976 112 ELLAEMIGKADLGP-----FRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEK----GLYD--TLYVAEAVL 179 (287)
T ss_pred HHHHHHHHhccCCc-----cceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhc----cchH--HHHHHHHHH
Confidence 36677777766554 789999999999999998887 56899999999999998874 2221 123334332
Q ss_pred C-C-CCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCC
Q 016981 220 Q-P-FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWC 297 (379)
Q Consensus 220 ~-~-~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (379)
+ + ...+.||+|++..|+.++.+.+.++.-+...|+|||.+.++.-...+... -.+.+ ...+ -+
T Consensus 180 Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~--f~l~p---------s~Ry----AH 244 (287)
T COG4976 180 FLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGG--FVLGP---------SQRY----AH 244 (287)
T ss_pred HhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCC--eecch---------hhhh----cc
Confidence 2 1 34678999999999999999999999999999999999998643322100 00111 1111 23
Q ss_pred CHHHHHHHHHhCCCceeEEEecCCC
Q 016981 298 STADYVKLLQSLSLEDIKAEDWSQN 322 (379)
Q Consensus 298 ~~~~~~~~l~~aGF~~v~~~~~~~~ 322 (379)
+...++.+++..||+++++++.+..
T Consensus 245 ~~~YVr~~l~~~Gl~~i~~~~ttiR 269 (287)
T COG4976 245 SESYVRALLAASGLEVIAIEDTTIR 269 (287)
T ss_pred chHHHHHHHHhcCceEEEeecccch
Confidence 6777899999999999999866543
No 73
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.60 E-value=1.5e-14 Score=131.10 Aligned_cols=120 Identities=21% Similarity=0.267 Sum_probs=92.7
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|++++..+++..++.+..+| .+||+|+++....
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~--------~~fD~Vvani~~~ 190 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD--------LKADVIVANILAN 190 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC--------CCcCEEEEcCcHH
Confidence 38899999999999999887753346999999999999999999887764344433222 2799999875432
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEE
Q 016981 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 317 (379)
. ...++.++.++|||||+++++++... ..+++.+.+++.||+.+...
T Consensus 191 ~---~~~l~~~~~~~LkpgG~lilsgi~~~------------------------------~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 191 P---LLELAPDLARLLKPGGRLILSGILEE------------------------------QADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred H---HHHHHHHHHHhcCCCcEEEEEECcHh------------------------------hHHHHHHHHHHCCCEEEEEE
Confidence 2 36789999999999999999874311 35578889999999988764
Q ss_pred e
Q 016981 318 D 318 (379)
Q Consensus 318 ~ 318 (379)
.
T Consensus 238 ~ 238 (250)
T PRK00517 238 E 238 (250)
T ss_pred E
Confidence 3
No 74
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.60 E-value=2.7e-14 Score=131.92 Aligned_cols=101 Identities=26% Similarity=0.337 Sum_probs=83.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+.+|||+|||+|.++..+++....+|+|+|+|+.+++.|++++..+++..++.+...+.. +..+++||+|+++.....
T Consensus 160 g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~--~~~~~~fDlVvan~~~~~ 237 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLE--QPIEGKADVIVANILAEV 237 (288)
T ss_pred CCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccc--cccCCCceEEEEecCHHH
Confidence 789999999999999988876445899999999999999999998887666777766633 233578999999765433
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 239 MPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 239 ~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
...++.++.++|||||+++++.+
T Consensus 238 ---l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 238 ---IKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred ---HHHHHHHHHHHcCCCcEEEEEeC
Confidence 36789999999999999999874
No 75
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.60 E-value=3.4e-14 Score=119.79 Aligned_cols=148 Identities=23% Similarity=0.300 Sum_probs=109.2
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC--CCCCCcccEEEeccc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDGQFDLVWSMES 235 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~V~~~~~ 235 (379)
++.+|||+|||.|.+...|.+..+.+.+|+|+++..+..+.++ .+.++++|+++. .|++++||.|+++.+
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r--------Gv~Viq~Dld~gL~~f~d~sFD~VIlsqt 84 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR--------GVSVIQGDLDEGLADFPDQSFDYVILSQT 84 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc--------CCCEEECCHHHhHhhCCCCCccEEehHhH
Confidence 4899999999999999999987688999999999998877662 477899998774 489999999999999
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHh-------hccC-CC--CCCCHHHHHHH
Q 016981 236 GEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKIC-------DAYY-LP--AWCSTADYVKL 305 (379)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~--~~~~~~~~~~~ 305 (379)
+.++.++..+|+++.|+ |...+++-.+. ..+.....-++..-. ..|| .| ++.|..+++++
T Consensus 85 LQ~~~~P~~vL~EmlRV---gr~~IVsFPNF-------g~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~l 154 (193)
T PF07021_consen 85 LQAVRRPDEVLEEMLRV---GRRAIVSFPNF-------GHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDL 154 (193)
T ss_pred HHhHhHHHHHHHHHHHh---cCeEEEEecCh-------HHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHH
Confidence 99999999999999777 44555554221 111111111101000 0111 11 46799999999
Q ss_pred HHhCCCceeEEEecCCCc
Q 016981 306 LQSLSLEDIKAEDWSQNV 323 (379)
Q Consensus 306 l~~aGF~~v~~~~~~~~~ 323 (379)
.++.|+++++...+...-
T Consensus 155 c~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 155 CRELGIRIEERVFLDGGR 172 (193)
T ss_pred HHHCCCEEEEEEEEcCCC
Confidence 999999999887665544
No 76
>PRK14967 putative methyltransferase; Provisional
Probab=99.59 E-value=1.6e-13 Score=122.32 Aligned_cols=146 Identities=17% Similarity=0.196 Sum_probs=104.0
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 220 (379)
.+...+..+.+.+ +.+|||+|||+|.++..+++....+|+++|+|+.+++.+++++...++ ++.+..+|+.+.
T Consensus 24 ~l~~~l~~~~~~~-----~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~ 96 (223)
T PRK14967 24 LLADALAAEGLGP-----GRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARA 96 (223)
T ss_pred HHHHHHHhcccCC-----CCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhh
Confidence 3444444444443 789999999999999999876334999999999999999999887765 588888888653
Q ss_pred CCCCCcccEEEeccccCCCCC---------------------HHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchH
Q 016981 221 PFPDGQFDLVWSMESGEHMPD---------------------KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPW 279 (379)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~---------------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~ 279 (379)
+++++||+|+++-....-.. ...+++++.++|||||++++.....
T Consensus 97 -~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~------------- 162 (223)
T PRK14967 97 -VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL------------- 162 (223)
T ss_pred -ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc-------------
Confidence 45678999998743221111 2567889999999999999864211
Q ss_pred HHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEEecCCCcc
Q 016981 280 EQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVA 324 (379)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~ 324 (379)
....++.+.+++.||..........+..
T Consensus 163 -----------------~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 190 (223)
T PRK14967 163 -----------------SGVERTLTRLSEAGLDAEVVASQWIPFG 190 (223)
T ss_pred -----------------cCHHHHHHHHHHCCCCeEEEEeeccCcc
Confidence 0234566778888887555544444333
No 77
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.59 E-value=3.7e-14 Score=130.24 Aligned_cols=94 Identities=30% Similarity=0.437 Sum_probs=80.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHcC----CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFG----AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~----~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~ 234 (379)
..+|||+|||+|.++..+++... ..++|+|+|+.|++.|+++. +++.+.++|+.++|+++++||+|++..
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp~~~~sfD~I~~~~ 159 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLPFADQSLDAIIRIY 159 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCCCcCCceeEEEEec
Confidence 57899999999999999987652 37999999999999998753 478899999999999999999999865
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
. ...+++++|+|||||++++....
T Consensus 160 ~-------~~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 160 A-------PCKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred C-------CCCHHHHHhhccCCCEEEEEeCC
Confidence 4 12468899999999999998743
No 78
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.59 E-value=3.9e-14 Score=125.01 Aligned_cols=112 Identities=21% Similarity=0.299 Sum_probs=92.2
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccC
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~ 217 (379)
.+...+++.+.+.+ +.+|||+|||+|..+..+++.. +.+|+++|+++.+++.|+++++..+. .++.+..+|.
T Consensus 63 ~~~~~~~~~l~~~~-----g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~ 136 (212)
T PRK13942 63 HMVAIMCELLDLKE-----GMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDG 136 (212)
T ss_pred HHHHHHHHHcCCCC-----cCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCc
Confidence 35566666666554 8999999999999999998876 36999999999999999999998876 5899999998
Q ss_pred CCCCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 218 LQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 218 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.....+.++||+|++.....++ ...+.+.|||||++++..
T Consensus 137 ~~~~~~~~~fD~I~~~~~~~~~------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 137 TLGYEENAPYDRIYVTAAGPDI------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred ccCCCcCCCcCEEEECCCcccc------hHHHHHhhCCCcEEEEEE
Confidence 7765556889999998776554 346677899999988854
No 79
>PLN03075 nicotianamine synthase; Provisional
Probab=99.58 E-value=7.2e-14 Score=127.03 Aligned_cols=104 Identities=22% Similarity=0.330 Sum_probs=87.9
Q ss_pred CCEEEEeCCcccHH-HHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHH-cCCCCCeEEEEccCCCCCCCCCcccEEEecc
Q 016981 159 PKNVVDVGCGIGGS-SRYLAKKF--GAKCQGITLSPVQAQRANALAAA-RGLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (379)
Q Consensus 159 ~~~vLDiGcGtG~~-~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~ 234 (379)
+.+|+|||||.|.+ +..++... +.+++|+|+++.+++.|++.+.. .++.+++.|..+|+.+.+...+.||+|++.
T Consensus 124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~- 202 (296)
T PLN03075 124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA- 202 (296)
T ss_pred CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe-
Confidence 88999999997744 44455433 67899999999999999999965 778788999999998764334789999999
Q ss_pred ccCCC--CCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 235 SGEHM--PDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 235 ~l~~~--~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+++++ +++.++++++++.|+|||.+++-.
T Consensus 203 ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 88887 688999999999999999999865
No 80
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.58 E-value=2.5e-13 Score=123.38 Aligned_cols=139 Identities=24% Similarity=0.386 Sum_probs=106.1
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCC
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 218 (379)
.++..+++.+. . .+.+|||+|||+|.++..+++.. +.+++|+|+++.+++.|++++...++. ++.+..+|+.
T Consensus 75 ~l~~~~l~~~~-~-----~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~ 147 (251)
T TIGR03534 75 ELVEAALERLK-K-----GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWF 147 (251)
T ss_pred HHHHHHHHhcc-c-----CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchh
Confidence 34455555443 1 25699999999999999999876 679999999999999999999888774 7999999987
Q ss_pred CCCCCCCcccEEEeccccCC------CC--------------------CHHHHHHHHHHhcCCCCEEEEEeccCCCCCCC
Q 016981 219 QQPFPDGQFDLVWSMESGEH------MP--------------------DKSKFVSELARVTAPAGTIIIVTWCHRDLAPS 272 (379)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~------~~--------------------~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~ 272 (379)
+ ++++++||+|+++-.... +. ....+++++.++|+|||.+++..-
T Consensus 148 ~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~-------- 218 (251)
T TIGR03534 148 E-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG-------- 218 (251)
T ss_pred c-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC--------
Confidence 6 455789999998543221 10 013678899999999999988430
Q ss_pred ccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEE
Q 016981 273 EESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (379)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 317 (379)
+...+++.++|+++||+.+.+.
T Consensus 219 -----------------------~~~~~~~~~~l~~~gf~~v~~~ 240 (251)
T TIGR03534 219 -----------------------YDQGEAVRALFEAAGFADVETR 240 (251)
T ss_pred -----------------------ccHHHHHHHHHHhCCCCceEEE
Confidence 1135678899999999987663
No 81
>PRK14968 putative methyltransferase; Provisional
Probab=99.58 E-value=9.5e-14 Score=120.32 Aligned_cols=127 Identities=21% Similarity=0.341 Sum_probs=100.6
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCC-eEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADK-VSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~-i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
+.+|||+|||+|.++..+++. +.+++|+|+|+.+++.+++++...++.++ +.+..+|..+. +.+++||+|+++..+.
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~d~vi~n~p~~ 101 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP-FRGDKFDVILFNPPYL 101 (188)
T ss_pred CCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-ccccCceEEEECCCcC
Confidence 789999999999999999988 78999999999999999999988776433 88888887653 4455899999876543
Q ss_pred CCC---------------------CHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCC
Q 016981 238 HMP---------------------DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAW 296 (379)
Q Consensus 238 ~~~---------------------~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (379)
+.. ....+++++.++|||||.+++.... .
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~------------------------------~ 151 (188)
T PRK14968 102 PTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS------------------------------L 151 (188)
T ss_pred CCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc------------------------------c
Confidence 311 1356899999999999998876421 1
Q ss_pred CCHHHHHHHHHhCCCceeEEE
Q 016981 297 CSTADYVKLLQSLSLEDIKAE 317 (379)
Q Consensus 297 ~~~~~~~~~l~~aGF~~v~~~ 317 (379)
...+++.++++++||+++.+.
T Consensus 152 ~~~~~l~~~~~~~g~~~~~~~ 172 (188)
T PRK14968 152 TGEDEVLEYLEKLGFEAEVVA 172 (188)
T ss_pred CCHHHHHHHHHHCCCeeeeee
Confidence 135678899999999877654
No 82
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.57 E-value=6.4e-14 Score=124.14 Aligned_cols=111 Identities=23% Similarity=0.315 Sum_probs=91.0
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 218 (379)
.+..+++.+.+.+ +.+|||+|||+|.++..+++..+ .+|+++|+++.+++.|+++++..++ +++.+..+|+.
T Consensus 65 ~~~~~~~~l~~~~-----~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~ 138 (215)
T TIGR00080 65 MVAMMTELLELKP-----GMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGT 138 (215)
T ss_pred HHHHHHHHhCCCC-----cCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcc
Confidence 4556666666554 89999999999999999998763 4699999999999999999999887 68999999987
Q ss_pred CCCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
......++||+|++.....++ ...+.+.|||||++++..
T Consensus 139 ~~~~~~~~fD~Ii~~~~~~~~------~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 139 QGWEPLAPYDRIYVTAAGPKI------PEALIDQLKEGGILVMPV 177 (215)
T ss_pred cCCcccCCCCEEEEcCCcccc------cHHHHHhcCcCcEEEEEE
Confidence 754345689999988766554 356788999999998854
No 83
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.56 E-value=2.4e-14 Score=124.70 Aligned_cols=104 Identities=27% Similarity=0.351 Sum_probs=88.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC---CCCCcccEEEecc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLVWSME 234 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~V~~~~ 234 (379)
..+|||||||+|.++..++++. ...|+|+|+++.+++.|++++...++ .|+.++.+|+.+++ ++++++|.|+++.
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l-~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL-KNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC-CCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 5699999999999999999987 67999999999999999999988887 48999999997653 4567899999876
Q ss_pred ccCCCCCH--------HHHHHHHHHhcCCCCEEEEEe
Q 016981 235 SGEHMPDK--------SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 235 ~l~~~~~~--------~~~l~~~~r~LkpgG~l~i~~ 263 (379)
...+.... ..++++++++|||||.|++..
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 54433221 578999999999999998876
No 84
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.55 E-value=1.8e-13 Score=116.58 Aligned_cols=103 Identities=31% Similarity=0.466 Sum_probs=85.9
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
..+|||+|||+|.++..+++.. ..+|+++|+++.+++.++++++.+++.. +.+...|..+. .++++||+|+++--++
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~-~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEA-LPDGKFDLIVSNPPFH 109 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTT-CCTTCEEEEEE---SB
T ss_pred CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccc-ccccceeEEEEccchh
Confidence 7899999999999999999986 4479999999999999999999998854 99999998664 3368999999987665
Q ss_pred CCCC-----HHHHHHHHHHhcCCCCEEEEEe
Q 016981 238 HMPD-----KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 238 ~~~~-----~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.-.+ ...+++++.+.|||||.+++..
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 4443 3788999999999999997755
No 85
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.54 E-value=2.2e-13 Score=128.46 Aligned_cols=103 Identities=20% Similarity=0.228 Sum_probs=87.3
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+.+|||+|||+|.++..++.. +..++|+|+++.|+..++++++..++. ++.+..+|+.++++++++||+|+++-....
T Consensus 183 g~~vLDp~cGtG~~lieaa~~-~~~v~g~Di~~~~~~~a~~nl~~~g~~-~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~ 260 (329)
T TIGR01177 183 GDRVLDPFCGTGGFLIEAGLM-GAKVIGCDIDWKMVAGARINLEHYGIE-DFFVKRGDATKLPLSSESVDAIATDPPYGR 260 (329)
T ss_pred cCEEEECCCCCCHHHHHHHHh-CCeEEEEcCCHHHHHHHHHHHHHhCCC-CCeEEecchhcCCcccCCCCEEEECCCCcC
Confidence 889999999999999887664 889999999999999999999988875 488999999999887889999998632211
Q ss_pred --------CCC-HHHHHHHHHHhcCCCCEEEEEe
Q 016981 239 --------MPD-KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 239 --------~~~-~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
..+ ...+++++.++|||||++++..
T Consensus 261 ~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 261 STTAAGDGLESLYERSLEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred cccccCCchHHHHHHHHHHHHHHccCCcEEEEEE
Confidence 111 3789999999999999998865
No 86
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.53 E-value=2.3e-14 Score=123.43 Aligned_cols=152 Identities=16% Similarity=0.259 Sum_probs=110.5
Q ss_pred CEEEEeCCcccHHHHHHHHHc-C--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC----CCCCCcccEEEe
Q 016981 160 KNVVDVGCGIGGSSRYLAKKF-G--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ----PFPDGQFDLVWS 232 (379)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~-~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~fD~V~~ 232 (379)
.+|||||||.|.....+.+.. . ..|++.|.||.+++..+++..... .++...+.|+... +...+++|.|++
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~ 150 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITL 150 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcCccceEEE
Confidence 389999999999999998865 3 689999999999999988765432 4566666666542 466789999999
Q ss_pred ccccCCCC--CHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHH---HhhccCCCCCCCHHHHHHHHH
Q 016981 233 MESGEHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKK---ICDAYYLPAWCSTADYVKLLQ 307 (379)
Q Consensus 233 ~~~l~~~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~ 307 (379)
.++|..++ ....++.+++++|||||.|++-|+...+.....-.-. +.+.. .....-..++++.+++.+++.
T Consensus 151 IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~----~~i~~nfYVRgDGT~~YfF~~eeL~~~f~ 226 (264)
T KOG2361|consen 151 IFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKG----QCISENFYVRGDGTRAYFFTEEELDELFT 226 (264)
T ss_pred EEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCC----ceeecceEEccCCceeeeccHHHHHHHHH
Confidence 99998884 3489999999999999999999987655321111000 00000 001111125789999999999
Q ss_pred hCCCceeEEE
Q 016981 308 SLSLEDIKAE 317 (379)
Q Consensus 308 ~aGF~~v~~~ 317 (379)
++||..++..
T Consensus 227 ~agf~~~~~~ 236 (264)
T KOG2361|consen 227 KAGFEEVQLE 236 (264)
T ss_pred hcccchhccc
Confidence 9999877653
No 87
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.51 E-value=3.2e-13 Score=125.66 Aligned_cols=146 Identities=21% Similarity=0.257 Sum_probs=99.5
Q ss_pred HHccCc-hhHHHhhhccccccccCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc
Q 016981 102 FYDESS-SLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF 180 (379)
Q Consensus 102 ~yd~~~-~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~ 180 (379)
+||..+ ..|+++.. .+.||..... ..........+.+.++ ++.+|||+|||+|..+..+++..
T Consensus 22 ~yd~~G~~lf~~i~~---~peYy~tr~E------~~il~~~~~~ia~~~~-------~~~~iLELGcGtG~~t~~Ll~~l 85 (301)
T TIGR03438 22 FYDARGSELFEQICE---LPEYYPTRTE------AAILERHADEIAAATG-------AGCELVELGSGSSRKTRLLLDAL 85 (301)
T ss_pred cccchHHHHHHHHHC---CCccccHHHH------HHHHHHHHHHHHHhhC-------CCCeEEecCCCcchhHHHHHHhh
Confidence 455543 44665543 3556653321 1223333444444432 26799999999999999999886
Q ss_pred --CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC-CCCCCC----cccEEEeccccCCCCC--HHHHHHHHHH
Q 016981 181 --GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-QPFPDG----QFDLVWSMESGEHMPD--KSKFVSELAR 251 (379)
Q Consensus 181 --~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~----~fD~V~~~~~l~~~~~--~~~~l~~~~r 251 (379)
+.+|+|+|+|+.|++.+++++.......++.++++|+.+ .+++.. ...++++..++++++. ..++|+++++
T Consensus 86 ~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~ 165 (301)
T TIGR03438 86 RQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQ 165 (301)
T ss_pred ccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHH
Confidence 579999999999999999988764322357778999876 344332 2234444567777753 4679999999
Q ss_pred hcCCCCEEEEEe
Q 016981 252 VTAPAGTIIIVT 263 (379)
Q Consensus 252 ~LkpgG~l~i~~ 263 (379)
+|+|||.+++..
T Consensus 166 ~L~pgG~~lig~ 177 (301)
T TIGR03438 166 LLGPGGGLLIGV 177 (301)
T ss_pred hcCCCCEEEEec
Confidence 999999998754
No 88
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.51 E-value=9.5e-14 Score=110.73 Aligned_cols=105 Identities=30% Similarity=0.505 Sum_probs=88.5
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--CCCCcccEEEecccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSMESG 236 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~V~~~~~l 236 (379)
|.+|||+|||+|.++..+++....+++|+|+++..++.++.++...++..+++++++|+.+.. +++++||+|+++-..
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 468999999999999999988548999999999999999999999888778999999998864 778999999998766
Q ss_pred CCCC--------CHHHHHHHHHHhcCCCCEEEEEe
Q 016981 237 EHMP--------DKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 237 ~~~~--------~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.... ....+++++.++|||||.+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 5331 12678999999999999998865
No 89
>PTZ00146 fibrillarin; Provisional
Probab=99.51 E-value=9.8e-13 Score=119.18 Aligned_cols=133 Identities=12% Similarity=0.084 Sum_probs=93.1
Q ss_pred CCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC---CCCCCcccEEE
Q 016981 157 KRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ---PFPDGQFDLVW 231 (379)
Q Consensus 157 ~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~fD~V~ 231 (379)
.++.+|||+|||+|.++..+++.. ...|+++|+++.+.+...+.+... +|+.++..|+... ....++||+|+
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~y~~~~~~vDvV~ 207 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQKYRMLVPMVDVIF 207 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhhhhcccCCCCEEE
Confidence 348999999999999999999987 358999999998665554444322 4789999998642 22346899999
Q ss_pred eccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHH----HHHHH
Q 016981 232 SMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADY----VKLLQ 307 (379)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~ 307 (379)
+... ...+...++.++.++|||||.|+|.. -..... .-.++++. .++|+
T Consensus 208 ~Dva--~pdq~~il~~na~r~LKpGG~~vI~i-ka~~id------------------------~g~~pe~~f~~ev~~L~ 260 (293)
T PTZ00146 208 ADVA--QPDQARIVALNAQYFLKNGGHFIISI-KANCID------------------------STAKPEVVFASEVQKLK 260 (293)
T ss_pred EeCC--CcchHHHHHHHHHHhccCCCEEEEEE-eccccc------------------------cCCCHHHHHHHHHHHHH
Confidence 8763 22233456678999999999999942 111100 00122222 37899
Q ss_pred hCCCceeEEEec
Q 016981 308 SLSLEDIKAEDW 319 (379)
Q Consensus 308 ~aGF~~v~~~~~ 319 (379)
++||+.++..+.
T Consensus 261 ~~GF~~~e~v~L 272 (293)
T PTZ00146 261 KEGLKPKEQLTL 272 (293)
T ss_pred HcCCceEEEEec
Confidence 999998887654
No 90
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.50 E-value=8.8e-13 Score=121.45 Aligned_cols=104 Identities=22% Similarity=0.339 Sum_probs=84.2
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccc--
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES-- 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~-- 235 (379)
+.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.|+++++..++..++.++.+|+.+. +++++||+|+++--
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~-~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA-LPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc-cCCCCccEEEECCCCC
Confidence 5799999999999999999887 6799999999999999999999988877899999998542 34568999998611
Q ss_pred ----cCCC-------C------------CHHHHHHHHHHhcCCCCEEEEEe
Q 016981 236 ----GEHM-------P------------DKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 236 ----l~~~-------~------------~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+.++ + ....+++++.++|+|||++++..
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~ 251 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV 251 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 1111 1 11567888999999999988743
No 91
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.50 E-value=2e-12 Score=108.41 Aligned_cols=133 Identities=17% Similarity=0.126 Sum_probs=105.8
Q ss_pred HHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCC
Q 016981 145 TLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP 223 (379)
Q Consensus 145 ~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 223 (379)
.+..+.+.+ +.+++|||||||..+..++... ..+|+++|-++.+++..++++++.++ +|+.++.+++.+.--.
T Consensus 26 ~ls~L~~~~-----g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~~L~~ 99 (187)
T COG2242 26 TLSKLRPRP-----GDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPEALPD 99 (187)
T ss_pred HHHhhCCCC-----CCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchHhhcC
Confidence 445555544 9999999999999999999554 67999999999999999999999996 7999999998764111
Q ss_pred CCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHH
Q 016981 224 DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYV 303 (379)
Q Consensus 224 ~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (379)
..+||.|+.... ..+ +.+++.+...|||||++++..... -+.....
T Consensus 100 ~~~~daiFIGGg-~~i---~~ile~~~~~l~~ggrlV~naitl------------------------------E~~~~a~ 145 (187)
T COG2242 100 LPSPDAIFIGGG-GNI---EEILEAAWERLKPGGRLVANAITL------------------------------ETLAKAL 145 (187)
T ss_pred CCCCCEEEECCC-CCH---HHHHHHHHHHcCcCCeEEEEeecH------------------------------HHHHHHH
Confidence 227999999887 444 889999999999999999865321 1344566
Q ss_pred HHHHhCCC-ceeEEE
Q 016981 304 KLLQSLSL-EDIKAE 317 (379)
Q Consensus 304 ~~l~~aGF-~~v~~~ 317 (379)
+.+++.|| +++++.
T Consensus 146 ~~~~~~g~~ei~~v~ 160 (187)
T COG2242 146 EALEQLGGREIVQVQ 160 (187)
T ss_pred HHHHHcCCceEEEEE
Confidence 88899999 666554
No 92
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.50 E-value=2.6e-12 Score=118.65 Aligned_cols=104 Identities=20% Similarity=0.298 Sum_probs=84.7
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEec----
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSM---- 233 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~---- 233 (379)
..+|||+|||+|.++..++... +.+|+|+|+|+.+++.|+++++..++..++.++.+|+.+ +++..+||+|+++
T Consensus 115 ~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 115 ILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYI 193 (284)
T ss_pred CCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCC
Confidence 3699999999999999999987 579999999999999999999988876569999999865 3444589999986
Q ss_pred ---------cccCCCC------------CHHHHHHHHHHhcCCCCEEEEEe
Q 016981 234 ---------ESGEHMP------------DKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 234 ---------~~l~~~~------------~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.++.|-+ ....++.++.++|+|||++++..
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1222222 23578889999999999987744
No 93
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.50 E-value=1.8e-13 Score=120.35 Aligned_cols=109 Identities=20% Similarity=0.263 Sum_probs=83.1
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 218 (379)
.+.++....++- +++.+|||+|||+|.++..+++.. +..|+|+|+++ |. .. +++.++++|+.
T Consensus 38 kl~~~~~~~~~~----~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~----------~~-~~v~~i~~D~~ 101 (209)
T PRK11188 38 KLDEIQQSDKLF----KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD----------PI-VGVDFLQGDFR 101 (209)
T ss_pred hhHHHHHHhccC----CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc----------CC-CCcEEEecCCC
Confidence 444445444432 247899999999999999999986 35899999998 21 12 46899999998
Q ss_pred CCC--------CCCCcccEEEeccccCCCCCH-----------HHHHHHHHHhcCCCCEEEEEecc
Q 016981 219 QQP--------FPDGQFDLVWSMESGEHMPDK-----------SKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 219 ~~~--------~~~~~fD~V~~~~~l~~~~~~-----------~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
+.+ +.+++||+|++..+.++..++ ..+|+++.++|||||.+++..+.
T Consensus 102 ~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 102 DELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred ChHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 853 567889999997766655432 46899999999999999997753
No 94
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.49 E-value=3.7e-13 Score=127.44 Aligned_cols=104 Identities=22% Similarity=0.258 Sum_probs=85.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCC--CCeEEEEccCCCCCCCCCcccEEEeccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLA--DKVSFQVGDALQQPFPDGQFDLVWSMES 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (379)
..+|||+|||+|.++..+++++ +.+|+++|+|+.+++.|+++++.++.. .++++...|.... +++++||+|+++-.
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~fDlIlsNPP 307 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPFRFNAVLCNPP 307 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCCCCEEEEEECcC
Confidence 5699999999999999999987 679999999999999999999877642 3688888887543 33468999999866
Q ss_pred cCCC---CC--HHHHHHHHHHhcCCCCEEEEEe
Q 016981 236 GEHM---PD--KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 236 l~~~---~~--~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
++.. .+ ..+++++++++|||||.++++.
T Consensus 308 fh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 308 FHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred cccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 6543 22 2678999999999999999985
No 95
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.49 E-value=5.2e-13 Score=125.86 Aligned_cols=104 Identities=20% Similarity=0.233 Sum_probs=89.4
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC--CCCCCcccEEEeccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDGQFDLVWSMES 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~V~~~~~ 235 (379)
+..+||||||+|.++..+|++. ...++|+|+++.+++.|.+++...++ .|+.++.+|+..+ .++++++|.|+++..
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL-~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL-KNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 6699999999999999999987 67999999999999999999998887 5899999998764 577899999998654
Q ss_pred cCCCCCH------HHHHHHHHHhcCCCCEEEEEe
Q 016981 236 GEHMPDK------SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 236 l~~~~~~------~~~l~~~~r~LkpgG~l~i~~ 263 (379)
..+...+ ..++++++|+|+|||.+.+.+
T Consensus 202 dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 202 VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred CCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 4433222 579999999999999999976
No 96
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.48 E-value=1.1e-12 Score=116.06 Aligned_cols=111 Identities=16% Similarity=0.177 Sum_probs=88.6
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 220 (379)
....++..+...+ +.+|||+|||+|..+..+++. ..+|+++|+++.+++.++++++..++ .++.+..+|..+.
T Consensus 66 ~~~~l~~~l~~~~-----~~~VLeiG~GsG~~t~~la~~-~~~v~~vd~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~ 138 (212)
T PRK00312 66 MVARMTELLELKP-----GDRVLEIGTGSGYQAAVLAHL-VRRVFSVERIKTLQWEAKRRLKQLGL-HNVSVRHGDGWKG 138 (212)
T ss_pred HHHHHHHhcCCCC-----CCEEEEECCCccHHHHHHHHH-hCEEEEEeCCHHHHHHHHHHHHHCCC-CceEEEECCcccC
Confidence 3445555555544 889999999999999888876 45999999999999999999998877 4699999997654
Q ss_pred CCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
....++||+|++...+.++ .+.+.+.|+|||++++...
T Consensus 139 ~~~~~~fD~I~~~~~~~~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 139 WPAYAPFDRILVTAAAPEI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CCcCCCcCEEEEccCchhh------hHHHHHhcCCCcEEEEEEc
Confidence 2234789999998766554 4567899999999988653
No 97
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.47 E-value=7e-13 Score=124.77 Aligned_cols=101 Identities=24% Similarity=0.304 Sum_probs=85.4
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
..+|||+|||+|.++..++++. +.+|+++|+|+.+++.|+++++.+++ ...+...|.... .++.||+|+++-.+|
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l--~~~~~~~D~~~~--~~~~fDlIvsNPPFH 272 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL--EGEVFASNVFSD--IKGRFDMIISNPPFH 272 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCEEEEcccccc--cCCCccEEEECCCcc
Confidence 4689999999999999999986 56999999999999999999998876 356777776543 257899999998887
Q ss_pred CCC-----CHHHHHHHHHHhcCCCCEEEEEe
Q 016981 238 HMP-----DKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 238 ~~~-----~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
... ...++++++.++|||||.++++.
T Consensus 273 ~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 273 DGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred CCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 632 34789999999999999999876
No 98
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=1.7e-12 Score=113.69 Aligned_cols=111 Identities=21% Similarity=0.355 Sum_probs=97.7
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC
Q 016981 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (379)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 220 (379)
..++..+++.+ +.+|||.|.|+|.++.+|+... .++|+.+|+.++..+.|++++...++.+++.+...|+.+.
T Consensus 84 ~~I~~~~gi~p-----g~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~ 158 (256)
T COG2519 84 GYIVARLGISP-----GSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREG 158 (256)
T ss_pred HHHHHHcCCCC-----CCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccc
Confidence 45566677776 9999999999999999999866 3699999999999999999999998877799999999887
Q ss_pred CCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
-+++ .||+|+. -+++|.+++..+.++|||||.+++...
T Consensus 159 ~~~~-~vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~P 196 (256)
T COG2519 159 IDEE-DVDAVFL-----DLPDPWNVLEHVSDALKPGGVVVVYSP 196 (256)
T ss_pred cccc-ccCEEEE-----cCCChHHHHHHHHHHhCCCcEEEEEcC
Confidence 6544 8999986 579999999999999999999998763
No 99
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.46 E-value=2.2e-12 Score=112.70 Aligned_cols=110 Identities=12% Similarity=0.050 Sum_probs=86.2
Q ss_pred HHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-CC
Q 016981 145 TLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PF 222 (379)
Q Consensus 145 ~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~ 222 (379)
+++.+...+ +.+|||+|||+|.++..+++.. +.+|+++|+|+.+++.++++++..+. .+++++.+|+.+. +.
T Consensus 32 l~~~l~~~~-----~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~~~~~~~ 105 (196)
T PRK07402 32 LISQLRLEP-----DSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSAPECLAQ 105 (196)
T ss_pred HHHhcCCCC-----CCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECchHHHHhh
Confidence 344444443 7899999999999999998765 57999999999999999999988877 4799999998652 22
Q ss_pred CCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 223 PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 223 ~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
....+|.|+... ..+...+++++.++|+|||++++...
T Consensus 106 ~~~~~d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 106 LAPAPDRVCIEG----GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CCCCCCEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 223467765532 23558899999999999999999763
No 100
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.46 E-value=4.6e-12 Score=120.19 Aligned_cols=125 Identities=20% Similarity=0.257 Sum_probs=95.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCC-CCcccEEEecccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP-DGQFDLVWSMESG 236 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~V~~~~~l 236 (379)
+.+|||+|||+|.++..++... +.+|+|+|+|+.+++.|+++++..+. ++.+..+|+.+..++ .++||+|+++--.
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~e~~l~~~~~FDLIVSNPPY 329 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--RVEFAHGSWFDTDMPSEGKWDIIVSNPPY 329 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchhccccccCCCccEEEECCCC
Confidence 5699999999999999998875 67999999999999999999988764 799999998654332 4579999996432
Q ss_pred CCC---------------------CC----HHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhcc
Q 016981 237 EHM---------------------PD----KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAY 291 (379)
Q Consensus 237 ~~~---------------------~~----~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (379)
..- .+ ..++++.+.+.|+|||++++.. .
T Consensus 330 I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi-G-------------------------- 382 (423)
T PRK14966 330 IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH-G-------------------------- 382 (423)
T ss_pred CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE-C--------------------------
Confidence 100 01 1356777788999999987633 1
Q ss_pred CCCCCCCHHHHHHHHHhCCCceeEE
Q 016981 292 YLPAWCSTADYVKLLQSLSLEDIKA 316 (379)
Q Consensus 292 ~~~~~~~~~~~~~~l~~aGF~~v~~ 316 (379)
+...+.+.+++++.||..+++
T Consensus 383 ----~~Q~e~V~~ll~~~Gf~~v~v 403 (423)
T PRK14966 383 ----FDQGAAVRGVLAENGFSGVET 403 (423)
T ss_pred ----ccHHHHHHHHHHHCCCcEEEE
Confidence 013567889999999987765
No 101
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.46 E-value=4.9e-12 Score=117.57 Aligned_cols=103 Identities=21% Similarity=0.357 Sum_probs=83.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccc--
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES-- 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~-- 235 (379)
..+|||+|||+|.++..++... +.+|+|+|+|+.+++.|+++++..++..++.+..+|+.+. +++++||+|+++--
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-LPGRRYDLIVSNPPYV 212 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-CCCCCccEEEECCCCC
Confidence 3689999999999999999887 6799999999999999999999888766899999997552 34568999998621
Q ss_pred -----------cCCCCC------------HHHHHHHHHHhcCCCCEEEEE
Q 016981 236 -----------GEHMPD------------KSKFVSELARVTAPAGTIIIV 262 (379)
Q Consensus 236 -----------l~~~~~------------~~~~l~~~~r~LkpgG~l~i~ 262 (379)
+.|-+. ...+++++.++|+|||++++.
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 011111 257789999999999999874
No 102
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.45 E-value=5.6e-12 Score=116.09 Aligned_cols=125 Identities=26% Similarity=0.403 Sum_probs=96.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
+.+|||+|||+|.++..++... ..+|+|+|+|+.+++.|++++. .....++.+..+|+... +++++||+|+++-...
T Consensus 109 ~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~-~~~~~fD~Iv~npPy~ 186 (275)
T PRK09328 109 PLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEP-LPGGRFDLIVSNPPYI 186 (275)
T ss_pred CCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCc-CCCCceeEEEECCCcC
Confidence 7899999999999999999987 5799999999999999999987 33346899999998553 3357899999853211
Q ss_pred --------------CC------------CCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhcc
Q 016981 238 --------------HM------------PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAY 291 (379)
Q Consensus 238 --------------~~------------~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (379)
|- .....+++++.++|+|||++++.. .
T Consensus 187 ~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~-g-------------------------- 239 (275)
T PRK09328 187 PEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI-G-------------------------- 239 (275)
T ss_pred CcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE-C--------------------------
Confidence 00 112567888889999999998833 0
Q ss_pred CCCCCCCHHHHHHHHHhCCCceeEE
Q 016981 292 YLPAWCSTADYVKLLQSLSLEDIKA 316 (379)
Q Consensus 292 ~~~~~~~~~~~~~~l~~aGF~~v~~ 316 (379)
+...+.+.+++++.||..+..
T Consensus 240 ----~~~~~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 240 ----YDQGEAVRALLAAAGFADVET 260 (275)
T ss_pred ----chHHHHHHHHHHhCCCceeEE
Confidence 012456888999999987665
No 103
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.45 E-value=2.9e-12 Score=113.23 Aligned_cols=132 Identities=21% Similarity=0.254 Sum_probs=107.6
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--CCCCcccEEEeccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSMES 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~V~~~~~ 235 (379)
..+|||+|||+|..+..++++. .++++|||+++.+.+.|+++.+.+++.++++++++|+.... ....+||+|+|+=-
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPP 124 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPP 124 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCC
Confidence 7899999999999999999987 58999999999999999999999999999999999998863 44457999999754
Q ss_pred cCCCC------------------CHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCC
Q 016981 236 GEHMP------------------DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWC 297 (379)
Q Consensus 236 l~~~~------------------~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (379)
..-.. +.+.+++.+.++|||||.+.++-.. .
T Consensus 125 yf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~-------------------------------e 173 (248)
T COG4123 125 YFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP-------------------------------E 173 (248)
T ss_pred CCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH-------------------------------H
Confidence 43221 2367889999999999999987511 0
Q ss_pred CHHHHHHHHHhCCCceeEEEecCC
Q 016981 298 STADYVKLLQSLSLEDIKAEDWSQ 321 (379)
Q Consensus 298 ~~~~~~~~l~~aGF~~v~~~~~~~ 321 (379)
...++.++|++.+|....+.....
T Consensus 174 rl~ei~~~l~~~~~~~k~i~~V~p 197 (248)
T COG4123 174 RLAEIIELLKSYNLEPKRIQFVYP 197 (248)
T ss_pred HHHHHHHHHHhcCCCceEEEEecC
Confidence 245677888888998777665433
No 104
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.44 E-value=1.6e-12 Score=110.31 Aligned_cols=118 Identities=22% Similarity=0.348 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcc
Q 016981 137 AQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216 (379)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d 216 (379)
.+..+.+..++.+.+.. ..+.-|||||||+|..+..+.+. |...+|+|+|+.|++.|.++-- .-.+..+|
T Consensus 32 IQ~em~eRaLELLalp~---~~~~~iLDIGCGsGLSg~vL~~~-Gh~wiGvDiSpsML~~a~~~e~------egdlil~D 101 (270)
T KOG1541|consen 32 IQAEMAERALELLALPG---PKSGLILDIGCGSGLSGSVLSDS-GHQWIGVDISPSMLEQAVEREL------EGDLILCD 101 (270)
T ss_pred ehHHHHHHHHHHhhCCC---CCCcEEEEeccCCCcchheeccC-CceEEeecCCHHHHHHHHHhhh------hcCeeeee
Confidence 44567777777766543 24778999999999999988887 7899999999999999987431 13466777
Q ss_pred C-CCCCCCCCcccEEEeccccCCCC-------CH----HHHHHHHHHhcCCCCEEEEEec
Q 016981 217 A-LQQPFPDGQFDLVWSMESGEHMP-------DK----SKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 217 ~-~~~~~~~~~fD~V~~~~~l~~~~-------~~----~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+ +.+||.+++||.|++...+.++- ++ ..++..++.+|++|++.++.-+
T Consensus 102 MG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfY 161 (270)
T KOG1541|consen 102 MGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFY 161 (270)
T ss_pred cCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEec
Confidence 6 45799999999999888776652 22 4578889999999999988763
No 105
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=2.8e-12 Score=109.99 Aligned_cols=111 Identities=19% Similarity=0.312 Sum_probs=94.4
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
.+...+++.+.+.+ +.+|||||||+|..+..|++.. .+|+.+|..+...+.|++++...|+. |+.+.++|...
T Consensus 59 ~~vA~m~~~L~~~~-----g~~VLEIGtGsGY~aAvla~l~-~~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~gDG~~ 131 (209)
T COG2518 59 HMVARMLQLLELKP-----GDRVLEIGTGSGYQAAVLARLV-GRVVSIERIEELAEQARRNLETLGYE-NVTVRHGDGSK 131 (209)
T ss_pred HHHHHHHHHhCCCC-----CCeEEEECCCchHHHHHHHHHh-CeEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEECCccc
Confidence 36677777777765 9999999999999999999974 49999999999999999999999984 69999999876
Q ss_pred CCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 220 QPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
---+..+||.|+.......+|. .+.+.|||||++++-.
T Consensus 132 G~~~~aPyD~I~Vtaaa~~vP~------~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 132 GWPEEAPYDRIIVTAAAPEVPE------ALLDQLKPGGRLVIPV 169 (209)
T ss_pred CCCCCCCcCEEEEeeccCCCCH------HHHHhcccCCEEEEEE
Confidence 5334588999999988887764 3567899999999865
No 106
>PHA03411 putative methyltransferase; Provisional
Probab=99.43 E-value=2.5e-12 Score=115.20 Aligned_cols=123 Identities=18% Similarity=0.225 Sum_probs=95.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
..+|||+|||+|.++..++++. +.+|+|+|+++.+++.+++++ +++.++.+|+.+... +++||+|+++-.+.
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~ 137 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFES-NEKFDVVISNPPFG 137 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcc-cCCCcEEEEcCCcc
Confidence 5699999999999999888875 579999999999999998763 368899999987653 46899999988888
Q ss_pred CCCC--------------------HHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCC
Q 016981 238 HMPD--------------------KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWC 297 (379)
Q Consensus 238 ~~~~--------------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (379)
+.+. ..++++....+|+|+|.+.+.--..+ + + +.-.
T Consensus 138 ~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~---------------~--------y-~~sl 193 (279)
T PHA03411 138 KINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRP---------------Y--------Y-DGTM 193 (279)
T ss_pred ccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccc---------------c--------c-cccC
Confidence 7532 13456777889999997766521100 0 0 1134
Q ss_pred CHHHHHHHHHhCCCc
Q 016981 298 STADYVKLLQSLSLE 312 (379)
Q Consensus 298 ~~~~~~~~l~~aGF~ 312 (379)
++++|+++|+++||.
T Consensus 194 ~~~~y~~~l~~~g~~ 208 (279)
T PHA03411 194 KSNKYLKWSKQTGLV 208 (279)
T ss_pred CHHHHHHHHHhcCcE
Confidence 799999999999997
No 107
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.42 E-value=3e-12 Score=114.14 Aligned_cols=139 Identities=22% Similarity=0.341 Sum_probs=108.4
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccC
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~ 217 (379)
.-+..++..+++.+ +.+|||.|.|+|.++..|++.. .++|+.+|+.++..+.|+++++..|+.+++.+.+.|+
T Consensus 27 kD~~~I~~~l~i~p-----G~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv 101 (247)
T PF08704_consen 27 KDISYILMRLDIRP-----GSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDV 101 (247)
T ss_dssp HHHHHHHHHTT--T-----T-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-G
T ss_pred chHHHHHHHcCCCC-----CCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecce
Confidence 34566777778876 9999999999999999999877 4699999999999999999999999988999999999
Q ss_pred CCCCCC---CCcccEEEeccccCCCCCHHHHHHHHHHhc-CCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCC
Q 016981 218 LQQPFP---DGQFDLVWSMESGEHMPDKSKFVSELARVT-APAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYL 293 (379)
Q Consensus 218 ~~~~~~---~~~fD~V~~~~~l~~~~~~~~~l~~~~r~L-kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (379)
.+..+. +..+|.|+. -+++|..++..+.++| ||||++++...+.. +
T Consensus 102 ~~~g~~~~~~~~~DavfL-----Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ie--------------Q----------- 151 (247)
T PF08704_consen 102 CEEGFDEELESDFDAVFL-----DLPDPWEAIPHAKRALKKPGGRICCFSPCIE--------------Q----------- 151 (247)
T ss_dssp GCG--STT-TTSEEEEEE-----ESSSGGGGHHHHHHHE-EEEEEEEEEESSHH--------------H-----------
T ss_pred ecccccccccCcccEEEE-----eCCCHHHHHHHHHHHHhcCCceEEEECCCHH--------------H-----------
Confidence 765442 367999986 5689999999999999 89999998764311 1
Q ss_pred CCCCCHHHHHHHHHhCCCceeEEEe
Q 016981 294 PAWCSTADYVKLLQSLSLEDIKAED 318 (379)
Q Consensus 294 ~~~~~~~~~~~~l~~aGF~~v~~~~ 318 (379)
.....+.|++.||..+++..
T Consensus 152 -----v~~~~~~L~~~gf~~i~~~E 171 (247)
T PF08704_consen 152 -----VQKTVEALREHGFTDIETVE 171 (247)
T ss_dssp -----HHHHHHHHHHTTEEEEEEEE
T ss_pred -----HHHHHHHHHHCCCeeeEEEE
Confidence 23345678889999887643
No 108
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.42 E-value=7.3e-12 Score=110.20 Aligned_cols=107 Identities=18% Similarity=0.230 Sum_probs=88.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH-----------cCCCCCeEEEEccCCCCCCC---C
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAA-----------RGLADKVSFQVGDALQQPFP---D 224 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~-----------~~~~~~i~~~~~d~~~~~~~---~ 224 (379)
+.+||+.|||.|..+..|+++ |.+|+|+|+|+.+++.+.+.... .--..++++.++|+.+++.. .
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~-G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~ 122 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSK-GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNL 122 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhC-CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccccc
Confidence 689999999999999999998 88999999999999987653200 00124799999999998532 2
Q ss_pred CcccEEEeccccCCCCC--HHHHHHHHHHhcCCCCEEEEEeccC
Q 016981 225 GQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCH 266 (379)
Q Consensus 225 ~~fD~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~i~~~~~ 266 (379)
+.||+|+-...+++++. ..+..+.+.++|+|||.+++..+..
T Consensus 123 ~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~ 166 (226)
T PRK13256 123 PVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEH 166 (226)
T ss_pred CCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEec
Confidence 68999999999999964 3789999999999999999987643
No 109
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.40 E-value=2.4e-12 Score=113.46 Aligned_cols=152 Identities=22% Similarity=0.301 Sum_probs=106.5
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH-cC----------CCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAA-RG----------LADK 209 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~----------~~~~ 209 (379)
.+.+.++.+.... +.+||..|||.|..+..|+++ |.+|+|+|+|+.+++.+.+.... .. -..+
T Consensus 25 ~L~~~~~~l~~~~-----~~rvLvPgCG~g~D~~~La~~-G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~ 98 (218)
T PF05724_consen 25 ALVEYLDSLALKP-----GGRVLVPGCGKGYDMLWLAEQ-GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGR 98 (218)
T ss_dssp HHHHHHHHHTTST-----SEEEEETTTTTSCHHHHHHHT-TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSS
T ss_pred HHHHHHHhcCCCC-----CCeEEEeCCCChHHHHHHHHC-CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCc
Confidence 4444455444443 789999999999999999998 88999999999999998543221 00 1236
Q ss_pred eEEEEccCCCCCCC-CCcccEEEeccccCCCC--CHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHH
Q 016981 210 VSFQVGDALQQPFP-DGQFDLVWSMESGEHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKK 286 (379)
Q Consensus 210 i~~~~~d~~~~~~~-~~~fD~V~~~~~l~~~~--~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (379)
|++.++|+..++.. .++||+|+=...++.++ ...+..+.+.++|+|||.+++.....+....
T Consensus 99 i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~--------------- 163 (218)
T PF05724_consen 99 ITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEM--------------- 163 (218)
T ss_dssp EEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCS---------------
T ss_pred eEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCC---------------
Confidence 88999999987533 35799999988888885 4588999999999999996665543322111
Q ss_pred HhhccCCCCCCCHHHHHHHHHhCCCceeEEEe
Q 016981 287 ICDAYYLPAWCSTADYVKLLQSLSLEDIKAED 318 (379)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 318 (379)
.+-|...+.+++.+++. .+|++...+.
T Consensus 164 ----~GPPf~v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 164 ----EGPPFSVTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp ----SSSS----HHHHHHHHT-TTEEEEEEEE
T ss_pred ----CCcCCCCCHHHHHHHhc-CCcEEEEEec
Confidence 01122347889999998 8998887765
No 110
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.40 E-value=8.1e-12 Score=112.75 Aligned_cols=146 Identities=24% Similarity=0.279 Sum_probs=103.6
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC
Q 016981 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221 (379)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 221 (379)
..++....... ..+|||||+|+|.++..+++++ +.+++..|+ |..++.+++ .++++++.+|+. .+
T Consensus 90 ~~~~~~~d~~~-----~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f-~~ 155 (241)
T PF00891_consen 90 DILLEAFDFSG-----FKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFF-DP 155 (241)
T ss_dssp HHHHHHSTTTT-----SSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TT-TC
T ss_pred hhhhccccccC-----ccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------ccccccccccHH-hh
Confidence 44455555544 6799999999999999999999 889999999 888888887 369999999998 66
Q ss_pred CCCCcccEEEeccccCCCCCH--HHHHHHHHHhcCCC--CEEEEEeccCCCCCCCccccc-hHHHHHHHHHhhccCCCCC
Q 016981 222 FPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPA--GTIIIVTWCHRDLAPSEESLQ-PWEQELLKKICDAYYLPAW 296 (379)
Q Consensus 222 ~~~~~fD~V~~~~~l~~~~~~--~~~l~~~~r~Lkpg--G~l~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 296 (379)
+|. +|+|+..++||++++. ..+|+++++.|+|| |+|+|.+...++......... .....+.--.... + .-
T Consensus 156 ~P~--~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~-G--~~ 230 (241)
T PF00891_consen 156 LPV--ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTG-G--KE 230 (241)
T ss_dssp CSS--ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHS-S--S-
T ss_pred hcc--ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcC-C--CC
Confidence 665 9999999999999765 68999999999999 999999987555332222110 0111111111111 1 13
Q ss_pred CCHHHHHHHHH
Q 016981 297 CSTADYVKLLQ 307 (379)
Q Consensus 297 ~~~~~~~~~l~ 307 (379)
.|.++|+++|+
T Consensus 231 rt~~e~~~ll~ 241 (241)
T PF00891_consen 231 RTEEEWEALLK 241 (241)
T ss_dssp EEHHHHHHHHH
T ss_pred cCHHHHHHHhC
Confidence 48899998874
No 111
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.39 E-value=1e-11 Score=123.03 Aligned_cols=126 Identities=15% Similarity=0.163 Sum_probs=96.7
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccc--
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES-- 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~-- 235 (379)
+.+|||+|||+|.++..++... +.+|+++|+|+.+++.|++++...++.+++.+..+|+.+ +++.++||+|+++--
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCCC
Confidence 5689999999999999999876 679999999999999999999888876789999999754 234568999998521
Q ss_pred ------------cCCCC--------C----HHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhcc
Q 016981 236 ------------GEHMP--------D----KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAY 291 (379)
Q Consensus 236 ------------l~~~~--------~----~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (379)
..|-+ + ...+++++.++|+|||.+++.. ..
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi-g~------------------------- 271 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI-GF------------------------- 271 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE-CC-------------------------
Confidence 11111 1 1456778889999999988742 11
Q ss_pred CCCCCCCHHHHHHHHHhCCCceeEE
Q 016981 292 YLPAWCSTADYVKLLQSLSLEDIKA 316 (379)
Q Consensus 292 ~~~~~~~~~~~~~~l~~aGF~~v~~ 316 (379)
...+.+.+++++.||..+.+
T Consensus 272 -----~q~~~v~~~~~~~g~~~~~~ 291 (506)
T PRK01544 272 -----KQEEAVTQIFLDHGYNIESV 291 (506)
T ss_pred -----chHHHHHHHHHhcCCCceEE
Confidence 13556778888899986654
No 112
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.39 E-value=5.9e-12 Score=117.13 Aligned_cols=111 Identities=14% Similarity=0.261 Sum_probs=89.0
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 218 (379)
++..+++.+.+.+ +.+|||+|||+|.++..+++..+ ..|+++|+++.+++.|+++++..+. +++.+..+|+.
T Consensus 68 l~a~ll~~L~i~~-----g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~ 141 (322)
T PRK13943 68 LMALFMEWVGLDK-----GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGY 141 (322)
T ss_pred HHHHHHHhcCCCC-----CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChh
Confidence 4555666655544 78999999999999999998763 4799999999999999999988887 57999999987
Q ss_pred CCCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
..+...++||+|++...+.++ ...+.+.|+|||++++..
T Consensus 142 ~~~~~~~~fD~Ii~~~g~~~i------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 142 YGVPEFAPYDVIFVTVGVDEV------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred hcccccCCccEEEECCchHHh------HHHHHHhcCCCCEEEEEe
Confidence 665445689999987655543 345678999999988854
No 113
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.39 E-value=3.3e-12 Score=111.63 Aligned_cols=113 Identities=23% Similarity=0.345 Sum_probs=88.6
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcc
Q 016981 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216 (379)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d 216 (379)
-.+...+++.+.+.+ +.+|||||||+|..+..++...+ ..|+++|..+...+.|++++...+. .|+.+..+|
T Consensus 58 P~~~a~~l~~L~l~p-----g~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~-~nv~~~~gd 131 (209)
T PF01135_consen 58 PSMVARMLEALDLKP-----GDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI-DNVEVVVGD 131 (209)
T ss_dssp HHHHHHHHHHTTC-T-----T-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT-HSEEEEES-
T ss_pred HHHHHHHHHHHhcCC-----CCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc-CceeEEEcc
Confidence 346777888887765 99999999999999999998764 3799999999999999999999887 489999999
Q ss_pred CCCCCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 217 ALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 217 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.....-...+||.|++......++ ..+.+.||+||+|++-.
T Consensus 132 g~~g~~~~apfD~I~v~~a~~~ip------~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 132 GSEGWPEEAPFDRIIVTAAVPEIP------EALLEQLKPGGRLVAPI 172 (209)
T ss_dssp GGGTTGGG-SEEEEEESSBBSS--------HHHHHTEEEEEEEEEEE
T ss_pred hhhccccCCCcCEEEEeeccchHH------HHHHHhcCCCcEEEEEE
Confidence 866433457899999988876553 33677899999999854
No 114
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.37 E-value=2.9e-12 Score=110.28 Aligned_cols=144 Identities=16% Similarity=0.223 Sum_probs=98.8
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
...++||.|+|.|+.+..+.-..-.+|..+|+.+..++.|++.+.... ....++++..+++...+.++||+|++.+++.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 468999999999999987765555699999999999999998764411 2346788888887744457999999999999
Q ss_pred CCCCH--HHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeE
Q 016981 238 HMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIK 315 (379)
Q Consensus 238 ~~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 315 (379)
|++|. .++|+++...|+|||.+++-+-...... ..+.... .. --.+.+.+++++++||++++.
T Consensus 134 hLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~---~~~D~~D--------sS----vTRs~~~~~~lF~~AGl~~v~ 198 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF---DEFDEED--------SS----VTRSDEHFRELFKQAGLRLVK 198 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE---EEEETTT--------TE----EEEEHHHHHHHHHHCT-EEEE
T ss_pred cCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC---cccCCcc--------Ce----eecCHHHHHHHHHHcCCEEEE
Confidence 99865 7999999999999999999874432211 0111000 00 012678899999999999998
Q ss_pred EE
Q 016981 316 AE 317 (379)
Q Consensus 316 ~~ 317 (379)
.+
T Consensus 199 ~~ 200 (218)
T PF05891_consen 199 EE 200 (218)
T ss_dssp EE
T ss_pred ec
Confidence 65
No 115
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.35 E-value=3.4e-11 Score=103.22 Aligned_cols=155 Identities=19% Similarity=0.169 Sum_probs=112.1
Q ss_pred EEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--C------CCCcccEEE
Q 016981 161 NVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--F------PDGQFDLVW 231 (379)
Q Consensus 161 ~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~------~~~~fD~V~ 231 (379)
+|||||||||.-+.+++..+ .....-.|+++..+...+......+++.-..-+..|+...+ . ..++||+|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 69999999999999999998 67888999999998877877777776433344566766642 2 245899999
Q ss_pred eccccCCCCC--HHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhC
Q 016981 232 SMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSL 309 (379)
Q Consensus 232 ~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 309 (379)
+.+++|-++- .+.+++.+.++|+|||.|++......+.....+. ...+...+....+.++ ..+.+++.++.+++
T Consensus 108 ~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~S-N~~FD~sLr~rdp~~G---iRD~e~v~~lA~~~ 183 (204)
T PF06080_consen 108 CINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSES-NAAFDASLRSRDPEWG---IRDIEDVEALAAAH 183 (204)
T ss_pred ehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcH-HHHHHHHHhcCCCCcC---ccCHHHHHHHHHHC
Confidence 9999988753 3789999999999999999988543332111111 1111222333333444 44899999999999
Q ss_pred CCceeEEEec
Q 016981 310 SLEDIKAEDW 319 (379)
Q Consensus 310 GF~~v~~~~~ 319 (379)
|++.++..++
T Consensus 184 GL~l~~~~~M 193 (204)
T PF06080_consen 184 GLELEEDIDM 193 (204)
T ss_pred CCccCccccc
Confidence 9998776544
No 116
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.34 E-value=1e-11 Score=95.66 Aligned_cols=101 Identities=37% Similarity=0.578 Sum_probs=85.1
Q ss_pred EEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCC-CCCcccEEEeccccCC-
Q 016981 161 NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF-PDGQFDLVWSMESGEH- 238 (379)
Q Consensus 161 ~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fD~V~~~~~l~~- 238 (379)
+|+|+|||+|..+..+++..+.+++++|+++.++..+++..... ...++.+...|+.+... ..++||+|++..++++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAAL-LADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcc-cccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 48999999999999998833679999999999999988544333 23578999999887653 4678999999999998
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEEE
Q 016981 239 MPDKSKFVSELARVTAPAGTIIIV 262 (379)
Q Consensus 239 ~~~~~~~l~~~~r~LkpgG~l~i~ 262 (379)
......+++.+.+.|+|||.+++.
T Consensus 80 ~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 677799999999999999999875
No 117
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=99.34 E-value=2.6e-12 Score=120.71 Aligned_cols=217 Identities=32% Similarity=0.430 Sum_probs=155.4
Q ss_pred HHHHHHHHHHHHccCchhHHHhhhccccccccCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccH
Q 016981 92 ARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGG 171 (379)
Q Consensus 92 ~~~~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~ 171 (379)
...+.+.+..+|+...+.|...|+..+|.+.+-..... ............+... ..++..++|+|||.|.
T Consensus 54 ~~~~~e~~~~~y~~~~dl~~~~w~~~~h~~~~~e~~~~-------~~~~~~~~~~~~l~~~---~~~~~~~~~~~~g~~~ 123 (364)
T KOG1269|consen 54 TEDLPEQIAKYYNNSTDLYERNWGQSFHFGRIPEGNSN-------EMFWIRHEGIVALRES---CFPGSKVLDVGTGVGG 123 (364)
T ss_pred ccccchHHHHHhcccchhhhhhhccchhccCccchhHH-------HHHHHhhcchHHHhhc---CcccccccccCcCcCc
Confidence 45666778999999999999999999998766322211 1111111211211111 1236789999999999
Q ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCCCCCHHHHHHHHHH
Q 016981 172 SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELAR 251 (379)
Q Consensus 172 ~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r 251 (379)
...+++...++.++|+|.++..+..+.......++..+..++.+|+.+.|++++.||.+.+..+..|.++...++++++|
T Consensus 124 ~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~r 203 (364)
T KOG1269|consen 124 PSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYR 203 (364)
T ss_pred hhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecccCCcHHHHHHHHhc
Confidence 99999886578999999999999999888887777777788889999999999999999999999999999999999999
Q ss_pred hcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEEecCC
Q 016981 252 VTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQ 321 (379)
Q Consensus 252 ~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 321 (379)
+++|||.++..+++.......... .......++..+.+.+....-..+-.+++..||..+..++...
T Consensus 204 v~kpGG~~i~~e~i~~~~~~~~~~---~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~~~~~~~~~dl~ 270 (364)
T KOG1269|consen 204 VLKPGGLFIVKEWIKTAKLKKPNS---EHVDILLEIEGGDALPAETFNTDVFDLLKSFGFEHLKLEKDLA 270 (364)
T ss_pred ccCCCceEEeHHHHHhhhccCCCc---ccccccCceeccccccceeccccHHHHHhhccchhhhhccccc
Confidence 999999999988765432211111 1111222222222233223344577888889998887554433
No 118
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.34 E-value=5.4e-11 Score=105.99 Aligned_cols=184 Identities=22% Similarity=0.290 Sum_probs=127.8
Q ss_pred ccCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcC---CEEEEEeCCHHHHHHHH
Q 016981 122 FYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG---AKCQGITLSPVQAQRAN 198 (379)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~---~~v~gvD~s~~~~~~a~ 198 (379)
|.+...|...-.........+.+.+..+.... .+.+||||.||.|........... .+|.-.|.|+..++..+
T Consensus 103 yLnaiGWrGIR~Rk~~l~~~i~~ai~~L~~~g----~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~ 178 (311)
T PF12147_consen 103 YLNAIGWRGIRQRKVHLEELIRQAIARLREQG----RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGR 178 (311)
T ss_pred hhcccchHHHHHHHHHHHHHHHHHHHHHHhcC----CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHH
Confidence 44444443322233344555555555443222 378999999999999888887762 58999999999999999
Q ss_pred HHHHHcCCCCCeEEEEccCCCCC-C--CCCcccEEEeccccCCCCCH---HHHHHHHHHhcCCCCEEEEEeccCCCCCCC
Q 016981 199 ALAAARGLADKVSFQVGDALQQP-F--PDGQFDLVWSMESGEHMPDK---SKFVSELARVTAPAGTIIIVTWCHRDLAPS 272 (379)
Q Consensus 199 ~~~~~~~~~~~i~~~~~d~~~~~-~--~~~~fD~V~~~~~l~~~~~~---~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~ 272 (379)
+.++..|+.+-++|.++|+.+.. + -+...++++.+..++.++|. ...+..+++++.|||+++.+.. |.
T Consensus 179 ~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQ------Pw 252 (311)
T PF12147_consen 179 ALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQ------PW 252 (311)
T ss_pred HHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCC------CC
Confidence 99999999766799999987741 2 13457999999999999885 5678999999999999998762 11
Q ss_pred ccccchHHHHHHHHH-hhccCCCCCCCHHHHHHHHHhCCCceeEE
Q 016981 273 EESLQPWEQELLKKI-CDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (379)
Q Consensus 273 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 316 (379)
.+.+......+.+.. ...|.+ ...+..++.++.++|||+-+..
T Consensus 253 HPQle~IAr~LtsHr~g~~WvM-RrRsq~EmD~Lv~~aGF~K~~q 296 (311)
T PF12147_consen 253 HPQLEMIARVLTSHRDGKAWVM-RRRSQAEMDQLVEAAGFEKIDQ 296 (311)
T ss_pred CcchHHHHHHHhcccCCCceEE-EecCHHHHHHHHHHcCCchhhh
Confidence 121211111111111 112222 3469999999999999986554
No 119
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.33 E-value=9.1e-11 Score=106.13 Aligned_cols=101 Identities=25% Similarity=0.372 Sum_probs=78.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-C-CCCCcccEEEeccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-FPDGQFDLVWSMES 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~~~~~fD~V~~~~~ 235 (379)
+.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.|++++..++ +++..+|+.+. + ...++||+|+++--
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~~~~~~~fDlVv~NPP 162 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALPTALRGRVDILAANAP 162 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcchhcCCCEeEEEECCC
Confidence 4689999999999999999876 5699999999999999999987654 47888887653 2 11357999998742
Q ss_pred cC------CCC----------------C----HHHHHHHHHHhcCCCCEEEEEe
Q 016981 236 GE------HMP----------------D----KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 236 l~------~~~----------------~----~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.. .++ | ...+++.+.++|||||++++..
T Consensus 163 y~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 163 YVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred CCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 21 110 1 1467778889999999998764
No 120
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=1.2e-10 Score=106.85 Aligned_cols=123 Identities=23% Similarity=0.346 Sum_probs=93.3
Q ss_pred EEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecccc--C
Q 016981 161 NVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG--E 237 (379)
Q Consensus 161 ~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l--~ 237 (379)
+|||+|||||..+..++... .++|+|+|+|+.+++.|++++..+++ .++.++..|..+. . .++||+|+++=-. .
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~-~-~~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEP-L-RGKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecccc-c-CCceeEEEeCCCCCCC
Confidence 79999999999999999987 46999999999999999999999988 5666777665442 2 2489999986321 1
Q ss_pred C---C-C-----CH--------------HHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCC
Q 016981 238 H---M-P-----DK--------------SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLP 294 (379)
Q Consensus 238 ~---~-~-----~~--------------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (379)
- . + +| .+++.++.+.|+|||.+++..-
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g------------------------------ 239 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG------------------------------ 239 (280)
T ss_pred cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC------------------------------
Confidence 1 1 0 11 4577888899999998887541
Q ss_pred CCCCHHHHHHHHHhCC-CceeEEE
Q 016981 295 AWCSTADYVKLLQSLS-LEDIKAE 317 (379)
Q Consensus 295 ~~~~~~~~~~~l~~aG-F~~v~~~ 317 (379)
+...+.+.+++++.| |..+...
T Consensus 240 -~~q~~~v~~~~~~~~~~~~v~~~ 262 (280)
T COG2890 240 -LTQGEAVKALFEDTGFFEIVETL 262 (280)
T ss_pred -CCcHHHHHHHHHhcCCceEEEEE
Confidence 114667889999999 6655543
No 121
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.32 E-value=2.8e-11 Score=118.04 Aligned_cols=108 Identities=18% Similarity=0.230 Sum_probs=86.5
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCC--CCCcccEEEec-
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF--PDGQFDLVWSM- 233 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~fD~V~~~- 233 (379)
++.+|||+|||+|..+..+++.. +++|+++|+++.+++.+++++++.|+..++.+..+|....+. +.++||.|++.
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDa 317 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDA 317 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEcC
Confidence 38899999999999999999876 479999999999999999999998875334446667655433 46789999852
Q ss_pred -----cccCCCCC----------------HHHHHHHHHHhcCCCCEEEEEecc
Q 016981 234 -----ESGEHMPD----------------KSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 234 -----~~l~~~~~----------------~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
+++.+.++ ..++|.++.++|||||+|++++.+
T Consensus 318 PcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs 370 (426)
T TIGR00563 318 PCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCS 370 (426)
T ss_pred CCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 45555444 257999999999999999998854
No 122
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.32 E-value=2.9e-11 Score=118.18 Aligned_cols=106 Identities=19% Similarity=0.268 Sum_probs=88.7
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC----CCCCcccEEE
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVW 231 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~V~ 231 (379)
++.+|||+|||+|..+..+++.. .++|+++|+++.+++.++++++..|+. ++.+..+|+...+ +..++||.|+
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~~~fD~Vl 330 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLELKPQWRGYFDRIL 330 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhcccccccccccCCEEE
Confidence 38899999999999999999876 358999999999999999999999884 6999999998765 3457899999
Q ss_pred ec------cccCCCCC----------------HHHHHHHHHHhcCCCCEEEEEec
Q 016981 232 SM------ESGEHMPD----------------KSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 232 ~~------~~l~~~~~----------------~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+. +++.+-++ ..++|.++.++|||||+|+.++.
T Consensus 331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystc 385 (434)
T PRK14901 331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATC 385 (434)
T ss_pred EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 63 34444443 25789999999999999998874
No 123
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.31 E-value=7.5e-12 Score=108.08 Aligned_cols=102 Identities=18% Similarity=0.209 Sum_probs=75.0
Q ss_pred CEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCCC
Q 016981 160 KNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHM 239 (379)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~ 239 (379)
..++|+|||+|..++.++..+ .+|+|+|+|+.|++.|++.....-..........+..++--.+++.|+|++...+|++
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~-k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF 113 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHY-KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF 113 (261)
T ss_pred ceEEEeccCCCcchHHHHHhh-hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhh
Confidence 389999999998888888874 6999999999999998875432211111222222333332237899999999999987
Q ss_pred CCHHHHHHHHHHhcCCCC-EEEEEe
Q 016981 240 PDKSKFVSELARVTAPAG-TIIIVT 263 (379)
Q Consensus 240 ~~~~~~l~~~~r~LkpgG-~l~i~~ 263 (379)
|.++++++++|+||+.| .+++-.
T Consensus 114 -dle~fy~~~~rvLRk~Gg~iavW~ 137 (261)
T KOG3010|consen 114 -DLERFYKEAYRVLRKDGGLIAVWN 137 (261)
T ss_pred -chHHHHHHHHHHcCCCCCEEEEEE
Confidence 77899999999999877 444433
No 124
>PRK04457 spermidine synthase; Provisional
Probab=99.30 E-value=3.1e-11 Score=109.82 Aligned_cols=106 Identities=11% Similarity=0.247 Sum_probs=84.2
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-CCCCCcccEEEecccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLVWSMESG 236 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~V~~~~~l 236 (379)
+.+|||||||+|.++..+++.. +.+++++|+++.+++.|++.+...+..++++++.+|+.+. .-..++||+|++...-
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~~ 146 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDGFD 146 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeCCC
Confidence 6799999999999999999887 6799999999999999999886544446899999998653 2224689999975311
Q ss_pred -CCCC---CHHHHHHHHHHhcCCCCEEEEEec
Q 016981 237 -EHMP---DKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 237 -~~~~---~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
...+ ...++++++.++|+|||++++..+
T Consensus 147 ~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 147 GEGIIDALCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred CCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 1111 126899999999999999998654
No 125
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.28 E-value=5.5e-11 Score=106.44 Aligned_cols=103 Identities=20% Similarity=0.285 Sum_probs=85.7
Q ss_pred CCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-C-----CCCCcccEE
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-----FPDGQFDLV 230 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-----~~~~~fD~V 230 (379)
+.+|||+|||+|..+..++... +++|+++|+++.+++.|+++++..|+.++++++.+|+.+. + .+.++||+|
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~V 148 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFA 148 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEE
Confidence 7899999999999988888765 4699999999999999999999999988899999998763 2 124689999
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
++...- +....++..+.+.|+|||.+++-..
T Consensus 149 fiDa~k---~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 149 FVDADK---PNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred EECCCH---HHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 875321 2346789999999999999887653
No 126
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.28 E-value=7.8e-11 Score=114.95 Aligned_cols=105 Identities=21% Similarity=0.302 Sum_probs=84.7
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--CCCCcccEEEecc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSME 234 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~V~~~~ 234 (379)
++.+|||+|||+|..+..+++.. +.+|+++|+++.+++.++++++..|+ ++.+.++|+.+.+ +..++||.|++.-
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~--~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL--KATVIVGDARDPAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEcCcccchhhcccCCCCEEEECC
Confidence 48899999999999999999986 46999999999999999999998876 4789999998753 3457899999432
Q ss_pred ------ccCCCC------C----------HHHHHHHHHHhcCCCCEEEEEec
Q 016981 235 ------SGEHMP------D----------KSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 235 ------~l~~~~------~----------~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
++.+-+ . ...++..+.++|||||++++++.
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 111111 1 13689999999999999999874
No 127
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.28 E-value=5.3e-11 Score=104.85 Aligned_cols=96 Identities=21% Similarity=0.334 Sum_probs=78.2
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
...++||||.|.|..+..++..+ .+|++++.|+.|....++ .| .+++ |..+..-.+.+||+|.|.++|.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f-~~v~aTE~S~~Mr~rL~~----kg----~~vl--~~~~w~~~~~~fDvIscLNvLD 162 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF-KEVYATEASPPMRWRLSK----KG----FTVL--DIDDWQQTDFKFDVISCLNVLD 162 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc-ceEEeecCCHHHHHHHHh----CC----CeEE--ehhhhhccCCceEEEeehhhhh
Confidence 47899999999999999999875 589999999999665544 33 3322 3333332356899999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 238 HMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
.-.+|..+|+.+++.|+|+|+++++..
T Consensus 163 Rc~~P~~LL~~i~~~l~p~G~lilAvV 189 (265)
T PF05219_consen 163 RCDRPLTLLRDIRRALKPNGRLILAVV 189 (265)
T ss_pred ccCCHHHHHHHHHHHhCCCCEEEEEEE
Confidence 999999999999999999999999763
No 128
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.27 E-value=5.4e-11 Score=108.60 Aligned_cols=106 Identities=15% Similarity=0.160 Sum_probs=85.7
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEec--
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSM-- 233 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~-- 233 (379)
++.+|||+|||+|..+..+++.. ...|+++|+++.+++.++++++..++ .++.+...|+...+...+.||+|++.
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~-~~v~~~~~D~~~~~~~~~~fD~Vl~D~P 149 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV-LNVAVTNFDGRVFGAAVPKFDAILLDAP 149 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-CcEEEecCCHHHhhhhccCCCEEEEcCC
Confidence 38899999999999999998876 35899999999999999999999887 47999999987765445679999863
Q ss_pred ----cccCCCCC----------------HHHHHHHHHHhcCCCCEEEEEec
Q 016981 234 ----ESGEHMPD----------------KSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 234 ----~~l~~~~~----------------~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
.++.+-++ ...+|+++.++|||||+|+.++-
T Consensus 150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstc 200 (264)
T TIGR00446 150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTC 200 (264)
T ss_pred CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 12222111 13589999999999999998773
No 129
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.27 E-value=8.7e-11 Score=115.20 Aligned_cols=106 Identities=19% Similarity=0.299 Sum_probs=85.9
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEec--
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSM-- 233 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~-- 233 (379)
++.+|||+|||+|..+..+++.. +.+|+++|+|+.+++.++++++..|+ .++.+.++|+...+ ++++||+|++.
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~-~~v~~~~~Da~~~~-~~~~fD~Vl~D~P 327 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI-TIIETIEGDARSFS-PEEQPDAILLDAP 327 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC-CeEEEEeCcccccc-cCCCCCEEEEcCC
Confidence 37899999999999999988865 46999999999999999999999887 47999999998765 45789999952
Q ss_pred ----cccCCCCC----------------HHHHHHHHHHhcCCCCEEEEEecc
Q 016981 234 ----ESGEHMPD----------------KSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 234 ----~~l~~~~~----------------~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
.++..-++ ...+|.++.++|||||++++++.+
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs 379 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCS 379 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 12211111 136899999999999999998743
No 130
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.27 E-value=2.6e-10 Score=111.89 Aligned_cols=116 Identities=23% Similarity=0.378 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcc
Q 016981 137 AQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216 (379)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d 216 (379)
....+++.+++.+...+ +.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++++.+++ .++.|..+|
T Consensus 281 ~~e~l~~~vl~~l~~~~-----~~~VLDlgcGtG~~sl~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~-~~v~~~~~d 353 (443)
T PRK13168 281 VNQKMVARALEWLDPQP-----GDRVLDLFCGLGNFTLPLARQ-AAEVVGVEGVEAMVERARENARRNGL-DNVTFYHAN 353 (443)
T ss_pred HHHHHHHHHHHHhcCCC-----CCEEEEEeccCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEeC
Confidence 34557777777765443 789999999999999999987 57999999999999999999998887 479999999
Q ss_pred CCCC----CCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 217 ALQQ----PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 217 ~~~~----~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+.+. ++.+++||+|++.---.- ....+..+.+ ++|++.++++-
T Consensus 354 ~~~~l~~~~~~~~~fD~Vi~dPPr~g---~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 354 LEEDFTDQPWALGGFDKVLLDPPRAG---AAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred hHHhhhhhhhhcCCCCEEEECcCCcC---hHHHHHHHHh-cCCCeEEEEEe
Confidence 8652 244568999987432111 2455655555 68999888865
No 131
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.27 E-value=1e-11 Score=105.98 Aligned_cols=150 Identities=19% Similarity=0.163 Sum_probs=113.7
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
...++|||||-|.+...+....-.+++-+|.|-.|++.++..- ..+ -.+...++|-+.++|.++++|+|+++..+|+
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q-dp~--i~~~~~v~DEE~Ldf~ens~DLiisSlslHW 149 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ-DPS--IETSYFVGDEEFLDFKENSVDLIISSLSLHW 149 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC-CCc--eEEEEEecchhcccccccchhhhhhhhhhhh
Confidence 5689999999999999998876458999999999999887531 112 2467788998999999999999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhcc----CCCCCCCHHHHHHHHHhCCCcee
Q 016981 239 MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAY----YLPAWCSTADYVKLLQSLSLEDI 314 (379)
Q Consensus 239 ~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~aGF~~v 314 (379)
+.|....+.++...|||+|.++-+-+..+...+.+..++ +.+..... ++.++.-..++..+|.+|||..+
T Consensus 150 ~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slq------LAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~ 223 (325)
T KOG2940|consen 150 TNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQ------LAELEREGGISPHISPFTQVRDIGNLLTRAGFSML 223 (325)
T ss_pred hccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhh------HHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccc
Confidence 999999999999999999998877665544332222221 22222222 22245556778899999999876
Q ss_pred EEE
Q 016981 315 KAE 317 (379)
Q Consensus 315 ~~~ 317 (379)
.+.
T Consensus 224 tvD 226 (325)
T KOG2940|consen 224 TVD 226 (325)
T ss_pred eec
Confidence 553
No 132
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.27 E-value=7.3e-11 Score=114.90 Aligned_cols=107 Identities=19% Similarity=0.254 Sum_probs=87.3
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-CCCCcccEEEec-
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDLVWSM- 233 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~V~~~- 233 (379)
++.+|||+|||+|..+..++... +.+|+++|+|+.+++.+++++++.|+. ++.+...|+..++ +..++||.|++.
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~~~~~~fD~Vl~Da 315 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTEYVQDTFDRILVDA 315 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhhhhhccCCEEEECC
Confidence 38899999999999999999876 569999999999999999999998884 6899999988765 446789999962
Q ss_pred --cccCCC---CC----------------HHHHHHHHHHhcCCCCEEEEEecc
Q 016981 234 --ESGEHM---PD----------------KSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 234 --~~l~~~---~~----------------~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
..+..+ ++ ..++|.++.+.|||||.+++++.+
T Consensus 316 PCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 316 PCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred CCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 122222 21 146789999999999999988754
No 133
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=9.8e-11 Score=105.69 Aligned_cols=103 Identities=26% Similarity=0.328 Sum_probs=85.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
+.+|||+|||.|.++..+++.. ..+++-+|++..+++.|++++..+++. +..++..|..+. .. ++||+|+++=-+|
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~-~~~v~~s~~~~~-v~-~kfd~IisNPPfh 235 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVE-NTEVWASNLYEP-VE-GKFDLIISNPPFH 235 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCC-ccEEEEeccccc-cc-ccccEEEeCCCcc
Confidence 5599999999999999999998 679999999999999999999998873 445666665443 33 3899999998777
Q ss_pred CCCCH-----HHHHHHHHHhcCCCCEEEEEec
Q 016981 238 HMPDK-----SKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 238 ~~~~~-----~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
-=.+. .+++.+..+.|++||.|.|+.-
T Consensus 236 ~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 236 AGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred CCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 43322 4899999999999999999873
No 134
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.26 E-value=1e-10 Score=99.64 Aligned_cols=109 Identities=22% Similarity=0.283 Sum_probs=82.6
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCC
Q 016981 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF 222 (379)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 222 (379)
+.+++.+.... +.+|||+|||+|.++..++++ +.+|+++|+++.+++.+++++.. .++++++.+|+.+.++
T Consensus 3 ~~i~~~~~~~~-----~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~ 73 (169)
T smart00650 3 DKIVRAANLRP-----GDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDL 73 (169)
T ss_pred HHHHHhcCCCC-----cCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCc
Confidence 44555555544 789999999999999999998 78999999999999999988754 2489999999999887
Q ss_pred CCCcccEEEeccccCCCCCHHHHHHHHHHh--cCCCCEEEEEe
Q 016981 223 PDGQFDLVWSMESGEHMPDKSKFVSELARV--TAPAGTIIIVT 263 (379)
Q Consensus 223 ~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~--LkpgG~l~i~~ 263 (379)
++.+||.|+++-.+ |+. ...+..+.+. +.++|.+++..
T Consensus 74 ~~~~~d~vi~n~Py-~~~--~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 74 PKLQPYKVVGNLPY-NIS--TPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred cccCCCEEEECCCc-ccH--HHHHHHHHhcCCCcceEEEEEEH
Confidence 77779999886443 332 3444444433 34677776653
No 135
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.26 E-value=4.3e-11 Score=101.96 Aligned_cols=126 Identities=17% Similarity=0.268 Sum_probs=83.9
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 220 (379)
-++.+++.+...+ +...|-|+|||.+.++..+.. +.+|...|+-. .|-.+..+|+...
T Consensus 59 Pvd~iI~~l~~~~----~~~viaD~GCGdA~la~~~~~--~~~V~SfDLva----------------~n~~Vtacdia~v 116 (219)
T PF05148_consen 59 PVDVIIEWLKKRP----KSLVIADFGCGDAKLAKAVPN--KHKVHSFDLVA----------------PNPRVTACDIANV 116 (219)
T ss_dssp HHHHHHHHHCTS-----TTS-EEEES-TT-HHHHH--S-----EEEEESS-----------------SSTTEEES-TTS-
T ss_pred cHHHHHHHHHhcC----CCEEEEECCCchHHHHHhccc--CceEEEeeccC----------------CCCCEEEecCccC
Confidence 4455555554332 367999999999998866543 35899999954 2445688999999
Q ss_pred CCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHH
Q 016981 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTA 300 (379)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (379)
|+++++.|++++...|.- .|+..++.|+.|+|||||.|.|++.... +.+.+
T Consensus 117 PL~~~svDv~VfcLSLMG-Tn~~~fi~EA~RvLK~~G~L~IAEV~SR----------------------------f~~~~ 167 (219)
T PF05148_consen 117 PLEDESVDVAVFCLSLMG-TNWPDFIREANRVLKPGGILKIAEVKSR----------------------------FENVK 167 (219)
T ss_dssp S--TT-EEEEEEES---S-S-HHHHHHHHHHHEEEEEEEEEEEEGGG-----------------------------S-HH
T ss_pred cCCCCceeEEEEEhhhhC-CCcHHHHHHHHheeccCcEEEEEEeccc----------------------------CcCHH
Confidence 999999999998877765 5889999999999999999999984321 22577
Q ss_pred HHHHHHHhCCCceeEEE
Q 016981 301 DYVKLLQSLSLEDIKAE 317 (379)
Q Consensus 301 ~~~~~l~~aGF~~v~~~ 317 (379)
.+.+.++..||+.....
T Consensus 168 ~F~~~~~~~GF~~~~~d 184 (219)
T PF05148_consen 168 QFIKALKKLGFKLKSKD 184 (219)
T ss_dssp HHHHHHHCTTEEEEEEE
T ss_pred HHHHHHHHCCCeEEecc
Confidence 88899999999988754
No 136
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.25 E-value=1.1e-10 Score=101.24 Aligned_cols=94 Identities=21% Similarity=0.359 Sum_probs=72.4
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--------CCCCcc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~f 227 (379)
++.+|||+|||+|.++..++++. ..+|+++|+|+.+ .. +++.+.++|+.+.+ ++.++|
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l~~~~~~~~~ 99 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKIRERVGDDKV 99 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHHHHHhCCCCc
Confidence 48899999999999999998876 3579999999854 11 46888888987642 456789
Q ss_pred cEEEeccccC--------CCC---CHHHHHHHHHHhcCCCCEEEEEe
Q 016981 228 DLVWSMESGE--------HMP---DKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 228 D~V~~~~~l~--------~~~---~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
|+|++....+ |.. +...++.++.++|+|||++++..
T Consensus 100 D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 100 DVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred cEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 9999864321 111 12678999999999999999865
No 137
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.25 E-value=8.6e-11 Score=121.16 Aligned_cols=105 Identities=19% Similarity=0.189 Sum_probs=84.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEccCCCC-CCCCCcccEEEeccc-
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLA-DKVSFQVGDALQQ-PFPDGQFDLVWSMES- 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~-~~~~~~fD~V~~~~~- 235 (379)
+.+|||+|||+|.++..++.....+|+++|+|+.+++.|+++++.+++. .+++++++|+.+. .-..++||+|++.--
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~ 618 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPPT 618 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCCC
Confidence 7899999999999999999863347999999999999999999999885 5799999998653 111468999998521
Q ss_pred ----------cCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 236 ----------GEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 236 ----------l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.....+...++..+.++|+|||.+++..
T Consensus 619 f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 619 FSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred CCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 1112234678888999999999988764
No 138
>PRK00811 spermidine synthase; Provisional
Probab=99.24 E-value=6.6e-11 Score=108.97 Aligned_cols=105 Identities=18% Similarity=0.272 Sum_probs=83.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC--C--CCCeEEEEccCCCC-CCCCCcccEEEe
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG--L--ADKVSFQVGDALQQ-PFPDGQFDLVWS 232 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~--~--~~~i~~~~~d~~~~-~~~~~~fD~V~~ 232 (379)
+.+||+||||+|..+..+++.. ..+|+++|+++.+++.|++.+...+ . .++++++.+|+... ....++||+|++
T Consensus 77 p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~ 156 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIV 156 (283)
T ss_pred CCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEE
Confidence 6899999999999999998864 4689999999999999999886532 1 46899999998763 334678999998
Q ss_pred ccccCCCCC----HHHHHHHHHHhcCCCCEEEEEe
Q 016981 233 MESGEHMPD----KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 233 ~~~l~~~~~----~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
...-.+.+. ..++++.+.+.|+|||.+++..
T Consensus 157 D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 157 DSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred CCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 643332222 2678899999999999988753
No 139
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.22 E-value=1.9e-10 Score=112.95 Aligned_cols=104 Identities=18% Similarity=0.257 Sum_probs=84.6
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--CCCCcccEEEec
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSM 233 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~V~~~ 233 (379)
++.+|||+|||+|..+..+++.. +++|+++|+++.+++.++++++..|+. ++.+.++|+.+.+ ++ ++||+|++.
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~-~~fD~Vl~D 327 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHEKFA-EKFDKILVD 327 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccchhc-ccCCEEEEc
Confidence 37899999999999999999876 569999999999999999999998884 5999999998753 33 789999974
Q ss_pred c------ccCCCCC----------------HHHHHHHHHHhcCCCCEEEEEe
Q 016981 234 E------SGEHMPD----------------KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 234 ~------~l~~~~~----------------~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
- ++.+-++ ...+|.++.++|||||+++.++
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst 379 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST 379 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 2 1222111 1357999999999999999876
No 140
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.21 E-value=9.9e-11 Score=109.41 Aligned_cols=107 Identities=21% Similarity=0.248 Sum_probs=78.1
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcC---------CCCCeEEEEccCCCC----CCCC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARG---------LADKVSFQVGDALQQ----PFPD 224 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---------~~~~i~~~~~d~~~~----~~~~ 224 (379)
++.+|||+|||-|....-.....-..++|+|++...++.|++|..... ..-...|+.+|.... .+++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 589999999998887666665545699999999999999999983311 112466788887643 1333
Q ss_pred --CcccEEEeccccCCCCC----HHHHHHHHHHhcCCCCEEEEEec
Q 016981 225 --GQFDLVWSMESGEHMPD----KSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 225 --~~fD~V~~~~~l~~~~~----~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
..||+|-|.+.+|+.-. ...+|+++.+.|+|||+++.+.+
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 59999999999998832 25699999999999999999874
No 141
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.17 E-value=1.6e-10 Score=110.88 Aligned_cols=104 Identities=13% Similarity=0.123 Sum_probs=81.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEccCCCCC--C--CCCcccEEEec
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLA-DKVSFQVGDALQQP--F--PDGQFDLVWSM 233 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~--~--~~~~fD~V~~~ 233 (379)
+.+|||+|||+|.++..++.....+|+++|+|+.+++.|+++++.+++. .+++++.+|+.+.. + ..++||+|++.
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilD 300 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMD 300 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEEC
Confidence 7899999999999988766543448999999999999999999999885 47999999987641 1 24689999976
Q ss_pred cccCCCC----------CHHHHHHHHHHhcCCCCEEEEEe
Q 016981 234 ESGEHMP----------DKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 234 ~~l~~~~----------~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
--. ... +...++..+.++|+|||.++...
T Consensus 301 PP~-f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 301 PPK-FVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred CCC-CCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 332 111 12445567789999999998866
No 142
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.16 E-value=2.8e-10 Score=98.75 Aligned_cols=103 Identities=30% Similarity=0.462 Sum_probs=83.1
Q ss_pred CEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-C--CCCCcccEEEeccc
Q 016981 160 KNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P--FPDGQFDLVWSMES 235 (379)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~--~~~~~fD~V~~~~~ 235 (379)
..+||||||.|.+...+|... ...++|+|++...+..+.+++...++ +|+.++.+|+... . ++++++|.|+.++.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 389999999999999999998 78999999999999999999998887 6999999999873 2 55789999998654
Q ss_pred cCCCCCH--------HHHHHHHHHhcCCCCEEEEEe
Q 016981 236 GEHMPDK--------SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 236 l~~~~~~--------~~~l~~~~r~LkpgG~l~i~~ 263 (379)
=-+.... ..++..++++|+|||.|.+.+
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 4443211 579999999999999999876
No 143
>PLN02672 methionine S-methyltransferase
Probab=99.16 E-value=8.6e-10 Score=116.13 Aligned_cols=104 Identities=25% Similarity=0.276 Sum_probs=79.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCC---------------CCCeEEEEccCCCCCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGL---------------ADKVSFQVGDALQQPF 222 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~---------------~~~i~~~~~d~~~~~~ 222 (379)
+.+|||+|||+|..++.+++.. ..+|+|+|+|+.+++.|+++++.+++ .++++|+++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 5689999999999999999987 57999999999999999999987543 2479999999876421
Q ss_pred C-CCcccEEEeccccC--------------C------------C--------CC----HHHHHHHHHHhcCCCCEEEEE
Q 016981 223 P-DGQFDLVWSMESGE--------------H------------M--------PD----KSKFVSELARVTAPAGTIIIV 262 (379)
Q Consensus 223 ~-~~~fD~V~~~~~l~--------------~------------~--------~~----~~~~l~~~~r~LkpgG~l~i~ 262 (379)
. ...||+|+++=--- | . .| ..+++.++.++|+|||++++-
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 1 23699999863210 0 0 01 156777888899999988764
No 144
>PRK01581 speE spermidine synthase; Validated
Probab=99.15 E-value=5e-10 Score=104.36 Aligned_cols=105 Identities=18% Similarity=0.233 Sum_probs=79.4
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHH--H---HcC-CCCCeEEEEccCCCC-CCCCCcccEE
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALA--A---ARG-LADKVSFQVGDALQQ-PFPDGQFDLV 230 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~--~---~~~-~~~~i~~~~~d~~~~-~~~~~~fD~V 230 (379)
+.+||++|||+|..++.+.+.. ..+|+++|+++.+++.|++.. . ... -.++++++.+|+.+. ....+.||+|
T Consensus 151 PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVI 230 (374)
T PRK01581 151 PKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVI 230 (374)
T ss_pred CCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEE
Confidence 6799999999999999888764 469999999999999999621 1 111 136899999998763 3345789999
Q ss_pred EeccccC--C-CCC--HHHHHHHHHHhcCCCCEEEEEe
Q 016981 231 WSMESGE--H-MPD--KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 231 ~~~~~l~--~-~~~--~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
++...-. . ... ..++++.+++.|+|||.+++..
T Consensus 231 IvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 231 IIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred EEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 9873211 0 111 1578999999999999988764
No 145
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.15 E-value=5.9e-10 Score=96.25 Aligned_cols=148 Identities=23% Similarity=0.438 Sum_probs=95.6
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcC-------------------------------
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARG------------------------------- 205 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~------------------------------- 205 (379)
.+..+|||||.+|.++..+++.++ ..++|+||++..++.|++.++...
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 378899999999999999999994 579999999999999999764210
Q ss_pred ---CCCCeEEEEccCCC-----CCCCCCcccEEEeccccCCCC----C--HHHHHHHHHHhcCCCCEEEEEeccCCCCCC
Q 016981 206 ---LADKVSFQVGDALQ-----QPFPDGQFDLVWSMESGEHMP----D--KSKFVSELARVTAPAGTIIIVTWCHRDLAP 271 (379)
Q Consensus 206 ---~~~~i~~~~~d~~~-----~~~~~~~fD~V~~~~~l~~~~----~--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~ 271 (379)
.++++.|...+..- +.+....||+|+|..+-.++. | ..+++++++++|.|||+|++--- +
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQ------p 211 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQ------P 211 (288)
T ss_pred cccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCC------c
Confidence 11122222211110 123356799999877665441 2 37899999999999999988321 1
Q ss_pred CccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhC--CCcee
Q 016981 272 SEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSL--SLEDI 314 (379)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a--GF~~v 314 (379)
...+.. ..+..+..... +..-+..++.+..+|-+. ||+-+
T Consensus 212 -WksY~k-aar~~e~~~~n-y~~i~lkp~~f~~~l~q~~vgle~~ 253 (288)
T KOG2899|consen 212 -WKSYKK-AARRSEKLAAN-YFKIFLKPEDFEDWLNQIVVGLESV 253 (288)
T ss_pred -hHHHHH-HHHHHHHhhcC-ccceecCHHHHHhhhhhhhhheeee
Confidence 111111 11222222222 223356899999998876 56544
No 146
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=99.14 E-value=3e-10 Score=98.83 Aligned_cols=122 Identities=17% Similarity=0.237 Sum_probs=93.6
Q ss_pred HHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC
Q 016981 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221 (379)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 221 (379)
++.+++.+...+ ....|-|+|||.+.++. .-...|+.+|+-+ .|-++..+|+.+.|
T Consensus 168 ld~ii~~ik~r~----~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a----------------~~~~V~~cDm~~vP 223 (325)
T KOG3045|consen 168 LDVIIRKIKRRP----KNIVIADFGCGEAKIAS----SERHKVHSFDLVA----------------VNERVIACDMRNVP 223 (325)
T ss_pred HHHHHHHHHhCc----CceEEEecccchhhhhh----ccccceeeeeeec----------------CCCceeeccccCCc
Confidence 444444443332 36789999999998765 2245899999843 46677899999999
Q ss_pred CCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHH
Q 016981 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTAD 301 (379)
Q Consensus 222 ~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (379)
+++++.|++++...|.- .|...++.+++|+|||||.+.|++... +|.+...
T Consensus 224 l~d~svDvaV~CLSLMg-tn~~df~kEa~RiLk~gG~l~IAEv~S----------------------------Rf~dv~~ 274 (325)
T KOG3045|consen 224 LEDESVDVAVFCLSLMG-TNLADFIKEANRILKPGGLLYIAEVKS----------------------------RFSDVKG 274 (325)
T ss_pred CccCcccEEEeeHhhhc-ccHHHHHHHHHHHhccCceEEEEehhh----------------------------hcccHHH
Confidence 99999999998766654 688999999999999999999998421 1235667
Q ss_pred HHHHHHhCCCceeEE
Q 016981 302 YVKLLQSLSLEDIKA 316 (379)
Q Consensus 302 ~~~~l~~aGF~~v~~ 316 (379)
+.+.|...||.....
T Consensus 275 f~r~l~~lGF~~~~~ 289 (325)
T KOG3045|consen 275 FVRALTKLGFDVKHK 289 (325)
T ss_pred HHHHHHHcCCeeeeh
Confidence 889999999987654
No 147
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.13 E-value=4.3e-10 Score=98.08 Aligned_cols=117 Identities=26% Similarity=0.413 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 016981 138 QVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVG 215 (379)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~ 215 (379)
.-+++..+++..+ +.+||||||++|..+..+++.. +++|+.+|+++...+.|++.++..|+.++++++.+
T Consensus 33 ~g~lL~~l~~~~~--------~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~g 104 (205)
T PF01596_consen 33 TGQLLQMLVRLTR--------PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEG 104 (205)
T ss_dssp HHHHHHHHHHHHT---------SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES
T ss_pred HHHHHHHHHHhcC--------CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEe
Confidence 3345555555543 7899999999999999999876 57999999999999999999999998889999999
Q ss_pred cCCCC-C-----CCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 216 DALQQ-P-----FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 216 d~~~~-~-----~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
|+.+. + .+.++||+|+.-..= .+....+..+.++|+|||.+++-...
T Consensus 105 da~~~l~~l~~~~~~~~fD~VFiDa~K---~~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 105 DALEVLPELANDGEEGQFDFVFIDADK---RNYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp -HHHHHHHHHHTTTTTSEEEEEEESTG---GGHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred ccHhhHHHHHhccCCCceeEEEEcccc---cchhhHHHHHhhhccCCeEEEEcccc
Confidence 98652 2 123689999976432 23477889999999999999886643
No 148
>PRK03612 spermidine synthase; Provisional
Probab=99.13 E-value=5.9e-10 Score=111.14 Aligned_cols=105 Identities=23% Similarity=0.281 Sum_probs=80.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHH--HHHc---CC-CCCeEEEEccCCCC-CCCCCcccEE
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANAL--AAAR---GL-ADKVSFQVGDALQQ-PFPDGQFDLV 230 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~--~~~~---~~-~~~i~~~~~d~~~~-~~~~~~fD~V 230 (379)
+.+|||+|||+|..+..+++..+ .+|+++|+++.+++.++++ +... .. .++++++.+|..+. ...+++||+|
T Consensus 298 ~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDvI 377 (521)
T PRK03612 298 PRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVI 377 (521)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCEE
Confidence 68999999999999999987543 6999999999999999983 3221 11 25899999998763 2234789999
Q ss_pred EeccccCCCCC-----HHHHHHHHHHhcCCCCEEEEEe
Q 016981 231 WSMESGEHMPD-----KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 231 ~~~~~l~~~~~-----~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
++.......+. ..++++.+.+.|||||.+++..
T Consensus 378 i~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 378 IVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 98754333222 1468999999999999988864
No 149
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.12 E-value=4.5e-10 Score=100.81 Aligned_cols=106 Identities=23% Similarity=0.264 Sum_probs=83.5
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-----CeEEEEccCCC------CCCCCCc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD-----KVSFQVGDALQ------QPFPDGQ 226 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-----~i~~~~~d~~~------~~~~~~~ 226 (379)
++..++|+|||-|..++-.-+..-..++|+||....++.|+++.+...-.. .+.|+.+|... +++++.+
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~ 196 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPR 196 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCC
Confidence 378899999999998777766544589999999999999999876532111 36788888754 2445566
Q ss_pred ccEEEeccccCCCC----CHHHHHHHHHHhcCCCCEEEEEe
Q 016981 227 FDLVWSMESGEHMP----DKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 227 fD~V~~~~~l~~~~----~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
||+|-|.+++|+.- ....+|+++.+.|||||+++-+.
T Consensus 197 fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTi 237 (389)
T KOG1975|consen 197 FDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTI 237 (389)
T ss_pred cceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEec
Confidence 99999999998762 23678999999999999998765
No 150
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=6.2e-09 Score=87.21 Aligned_cols=127 Identities=20% Similarity=0.139 Sum_probs=91.9
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+.+|+|+|||||.++...+-....+|+|+|+++++++.++++..+.+ .++.|.++|+.+.. +.+|.|+.+=-+.-
T Consensus 46 g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~--g~v~f~~~dv~~~~---~~~dtvimNPPFG~ 120 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL--GDVEFVVADVSDFR---GKFDTVIMNPPFGS 120 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC--CceEEEEcchhhcC---CccceEEECCCCcc
Confidence 78999999999999998887645789999999999999999998843 58999999998873 66888887755543
Q ss_pred C---CCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeE
Q 016981 239 M---PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIK 315 (379)
Q Consensus 239 ~---~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 315 (379)
. .| ..++..+.+.- .++.+- +..-+.+-+++..+++|+++..
T Consensus 121 ~~rhaD-r~Fl~~Ale~s----~vVYsi------------------------------H~a~~~~f~~~~~~~~G~~v~~ 165 (198)
T COG2263 121 QRRHAD-RPFLLKALEIS----DVVYSI------------------------------HKAGSRDFVEKFAADLGGTVTH 165 (198)
T ss_pred ccccCC-HHHHHHHHHhh----heEEEe------------------------------eccccHHHHHHHHHhcCCeEEE
Confidence 2 23 34454444433 111111 1112566778888999999887
Q ss_pred EEecCCCccc
Q 016981 316 AEDWSQNVAP 325 (379)
Q Consensus 316 ~~~~~~~~~~ 325 (379)
......++..
T Consensus 166 ~~~~~~~iP~ 175 (198)
T COG2263 166 IERARFPIPR 175 (198)
T ss_pred EEEEEEecCc
Confidence 7666655544
No 151
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.12 E-value=1.6e-09 Score=94.41 Aligned_cols=107 Identities=25% Similarity=0.427 Sum_probs=89.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE-ccCCCC-C-CCCCcccEEEec
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQV-GDALQQ-P-FPDGQFDLVWSM 233 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~-~-~~~~~fD~V~~~ 233 (379)
+++|||||++.|..+..++... .++++.+|+++++.+.|++++++.|+.+++..+. +|..+. . ...++||+|+.-
T Consensus 60 ~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFID 139 (219)
T COG4122 60 PKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFID 139 (219)
T ss_pred CceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEEe
Confidence 8899999999999999999877 4689999999999999999999999988888888 476553 2 346899999865
Q ss_pred cccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCC
Q 016981 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRD 268 (379)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~ 268 (379)
.-= .+...++..+.++|+|||.+++-....+.
T Consensus 140 adK---~~yp~~le~~~~lLr~GGliv~DNvl~~G 171 (219)
T COG4122 140 ADK---ADYPEYLERALPLLRPGGLIVADNVLFGG 171 (219)
T ss_pred CCh---hhCHHHHHHHHHHhCCCcEEEEeecccCC
Confidence 321 23378999999999999999887755443
No 152
>PLN02476 O-methyltransferase
Probab=99.11 E-value=1.2e-09 Score=98.98 Aligned_cols=104 Identities=15% Similarity=0.169 Sum_probs=86.7
Q ss_pred CCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-C-C----CCCcccEE
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-F----PDGQFDLV 230 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~----~~~~fD~V 230 (379)
+.+|||||||+|..+..++... +++|+.+|.++...+.|+++++..|+.+++++..+|+.+. + + ..++||+|
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~V 198 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFA 198 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEE
Confidence 7899999999999999999865 4689999999999999999999999988999999998663 2 1 13689999
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
+.-.-= .+...++..+.++|+|||.+++-...
T Consensus 199 FIDa~K---~~Y~~y~e~~l~lL~~GGvIV~DNvL 230 (278)
T PLN02476 199 FVDADK---RMYQDYFELLLQLVRVGGVIVMDNVL 230 (278)
T ss_pred EECCCH---HHHHHHHHHHHHhcCCCcEEEEecCc
Confidence 975321 23478899999999999998886543
No 153
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.10 E-value=7e-10 Score=95.99 Aligned_cols=106 Identities=23% Similarity=0.361 Sum_probs=71.3
Q ss_pred CCCEEEEeCCcccH----HHHHHHHHc------CCEEEEEeCCHHHHHHHHHHH--------------HHc-----C---
Q 016981 158 RPKNVVDVGCGIGG----SSRYLAKKF------GAKCQGITLSPVQAQRANALA--------------AAR-----G--- 205 (379)
Q Consensus 158 ~~~~vLDiGcGtG~----~~~~l~~~~------~~~v~gvD~s~~~~~~a~~~~--------------~~~-----~--- 205 (379)
+..+|+..||+||. +++.+.+.. ..+++|+|+|+.+++.|++-. ++. +
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 37899999999997 445555521 248999999999999998620 000 0
Q ss_pred -----CCCCeEEEEccCCCCCCCCCcccEEEeccccCCCCCH--HHHHHHHHHhcCCCCEEEEEe
Q 016981 206 -----LADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 206 -----~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+-.++.|...|+.+.+.+.+.||+|+|.+|+.++... .++++.+++.|+|||+|++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 1246999999998843346889999999999999654 789999999999999999964
No 154
>PLN02366 spermidine synthase
Probab=99.10 E-value=9.3e-10 Score=101.97 Aligned_cols=105 Identities=22% Similarity=0.370 Sum_probs=81.6
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC--C-CCCeEEEEccCCCC--CCCCCcccEEEe
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG--L-ADKVSFQVGDALQQ--PFPDGQFDLVWS 232 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~--~~~~~~fD~V~~ 232 (379)
+.+||+||||.|..++.+++.. ..+|+.+|+++.+++.+++.+...+ + .++++++.+|+... ..++++||+|++
T Consensus 92 pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~ 171 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIV 171 (308)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEE
Confidence 7899999999999999998764 3589999999999999999886531 2 35899999997543 123578999998
Q ss_pred ccccCCCCC----HHHHHHHHHHhcCCCCEEEEEe
Q 016981 233 MESGEHMPD----KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 233 ~~~l~~~~~----~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
...-.+.+. ..++++.+++.|+|||.++...
T Consensus 172 D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 172 DSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred cCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 543322221 2578999999999999987643
No 155
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.09 E-value=9.2e-09 Score=95.46 Aligned_cols=151 Identities=15% Similarity=0.228 Sum_probs=96.7
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHc-CCCCCeEEEE-ccCCCCC----CCCCcccEE
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAAR-GLADKVSFQV-GDALQQP----FPDGQFDLV 230 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~i~~~~-~d~~~~~----~~~~~fD~V 230 (379)
++.+|||||||+|.....++.+. +.+++|+|+++.+++.|+++++.+ ++..++.+.. .|...+. .+.+.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 47899999999998877777655 789999999999999999999998 7877888864 3332221 235789999
Q ss_pred EeccccCCCCCH-----HHHHHHH----------------HHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhh
Q 016981 231 WSMESGEHMPDK-----SKFVSEL----------------ARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICD 289 (379)
Q Consensus 231 ~~~~~l~~~~~~-----~~~l~~~----------------~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (379)
+|+=-++.-.+. .+-.+.+ .+++.+||.+.++... ......+....
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~m-----------i~eS~~~~~~~-- 260 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRM-----------IEESKAFAKQV-- 260 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHh-----------hHHHHHHHhhC--
Confidence 998665433211 1122222 2334456665444311 11111111111
Q ss_pred ccC---CCCCCCHHHHHHHHHhCCCceeEEEecCC
Q 016981 290 AYY---LPAWCSTADYVKLLQSLSLEDIKAEDWSQ 321 (379)
Q Consensus 290 ~~~---~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 321 (379)
.++ ...--+...+.+.|++.|...+.+..+..
T Consensus 261 gwftsmv~kk~~l~~l~~~L~~~~~~~~~~~e~~q 295 (321)
T PRK11727 261 LWFTSLVSKKENLPPLYRALKKVGAVEVKTIEMAQ 295 (321)
T ss_pred cEEEEEeeccCCHHHHHHHHHHcCCceEEEEEEeC
Confidence 111 11223789999999999998887766543
No 156
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.09 E-value=3.7e-09 Score=91.86 Aligned_cols=103 Identities=14% Similarity=0.055 Sum_probs=79.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-CCCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~V~~~~~l~ 237 (379)
+.+|||+|||+|.++..++.+...+|+++|.++.+++.++++++..+. .++.++.+|+.+. +...++||+|++.=-+.
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~-~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~ 132 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA-GNARVVNTNALSFLAQPGTPHNVVFVDPPFR 132 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEEchHHHHHhhcCCCceEEEECCCCC
Confidence 679999999999999876555457999999999999999999998886 4799999998663 22245799999875522
Q ss_pred CCCCHHHHHHHHHH--hcCCCCEEEEEe
Q 016981 238 HMPDKSKFVSELAR--VTAPAGTIIIVT 263 (379)
Q Consensus 238 ~~~~~~~~l~~~~r--~LkpgG~l~i~~ 263 (379)
-.-...+++.+.. +|+|+|.+++..
T Consensus 133 -~g~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 133 -KGLLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred -CChHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 1223455666655 379999888765
No 157
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.09 E-value=6.2e-10 Score=94.95 Aligned_cols=105 Identities=21% Similarity=0.233 Sum_probs=74.7
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC--CCCCeEEEEccCCCCC----CCCCcccEE
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG--LADKVSFQVGDALQQP----FPDGQFDLV 230 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~----~~~~~fD~V 230 (379)
++.+|||+|||+|..++.++... ..+|+.+|.++ .++..+.+++.++ ...++.+...|-.+.. ....+||+|
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~I 123 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVI 123 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEE
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEE
Confidence 48899999999999999999874 67999999999 9999999988766 4567888887764421 334689999
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
++..+++.-.....+++.+.++|+|+|.++++.
T Consensus 124 lasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 124 LASDVLYDEELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp EEES--S-GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred EEecccchHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 999999987777899999999999999977765
No 158
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.08 E-value=1.7e-09 Score=101.43 Aligned_cols=100 Identities=26% Similarity=0.268 Sum_probs=76.5
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCC-CCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF-PDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fD~V~~~~~l~ 237 (379)
+.+|||+|||+|.++..+++. +.+|+|+|+++.+++.|+++++..++ .+++|..+|+.+... ..+.||+|++.-.-.
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~-~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~ 251 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATP-GMQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQGEVPDLVLVNPPRR 251 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhcCCCCeEEEECCCCC
Confidence 689999999999999999986 68999999999999999999999888 589999999977532 245799999762211
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 238 HMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.-...+++ ....++|++.++++.
T Consensus 252 --G~~~~~~~-~l~~~~~~~ivyvsc 274 (315)
T PRK03522 252 --GIGKELCD-YLSQMAPRFILYSSC 274 (315)
T ss_pred --CccHHHHH-HHHHcCCCeEEEEEC
Confidence 01123333 334467877766654
No 159
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.08 E-value=3.7e-09 Score=103.58 Aligned_cols=116 Identities=19% Similarity=0.312 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcc
Q 016981 137 AQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216 (379)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d 216 (379)
....+++.+++.+.... +.+|||+|||+|.++..+++. ..+|+|+|+++.+++.|++++..+++ .+++|+.+|
T Consensus 276 ~~~~l~~~~~~~l~~~~-----~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~~d 348 (431)
T TIGR00479 276 QNEKLVDRALEALELQG-----EELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGI-ANVEFLAGT 348 (431)
T ss_pred HHHHHHHHHHHHhccCC-----CCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCC-CceEEEeCC
Confidence 44456666666665443 689999999999999999987 56999999999999999999998887 589999999
Q ss_pred CCCC----CCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEE
Q 016981 217 ALQQ----PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (379)
Q Consensus 217 ~~~~----~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~ 262 (379)
+.+. ++.+++||+|++.-.=. .-...+++.+.+ ++|++.++++
T Consensus 349 ~~~~l~~~~~~~~~~D~vi~dPPr~--G~~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 349 LETVLPKQPWAGQIPDVLLLDPPRK--GCAAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred HHHHHHHHHhcCCCCCEEEECcCCC--CCCHHHHHHHHh-cCCCEEEEEc
Confidence 8653 23346799998643211 112566666554 8998877764
No 160
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.08 E-value=1.3e-09 Score=99.93 Aligned_cols=104 Identities=18% Similarity=0.279 Sum_probs=80.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC--C-CCCeEEEEccCCCC-CCCCCcccEEEec
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG--L-ADKVSFQVGDALQQ-PFPDGQFDLVWSM 233 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~-~~~~~~fD~V~~~ 233 (379)
+.+||+||||+|.++..+++.. ..+++++|+++.+++.+++.+...+ . .+++++..+|.... ....++||+|++.
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D 152 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVD 152 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEe
Confidence 5699999999999999988765 4689999999999999999875432 1 24788888887542 2224789999986
Q ss_pred cccCCCC--C--HHHHHHHHHHhcCCCCEEEEE
Q 016981 234 ESGEHMP--D--KSKFVSELARVTAPAGTIIIV 262 (379)
Q Consensus 234 ~~l~~~~--~--~~~~l~~~~r~LkpgG~l~i~ 262 (379)
.....-+ + ..++++.+.+.|+|||.+++.
T Consensus 153 ~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 153 STDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred CCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 5422211 2 368899999999999999886
No 161
>PHA03412 putative methyltransferase; Provisional
Probab=99.03 E-value=1.7e-09 Score=94.95 Aligned_cols=93 Identities=20% Similarity=0.280 Sum_probs=73.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHc----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF----GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~ 234 (379)
+.+|||+|||+|.++..++++. ..+|+++|+++.+++.|+++. .++.+...|+...++ +++||+|+++=
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~------~~~~~~~~D~~~~~~-~~~FDlIIsNP 122 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV------PEATWINADALTTEF-DTLFDMAISNP 122 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc------cCCEEEEcchhcccc-cCCccEEEECC
Confidence 6799999999999999998763 358999999999999999764 358899999877654 56899999875
Q ss_pred ccCCCC--C----------HHHHHHHHHHhcCCCCE
Q 016981 235 SGEHMP--D----------KSKFVSELARVTAPAGT 258 (379)
Q Consensus 235 ~l~~~~--~----------~~~~l~~~~r~LkpgG~ 258 (379)
-+.-.. + ...++..+.++++||+.
T Consensus 123 PY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 123 PFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 444221 1 25688888887777664
No 162
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=99.02 E-value=1.7e-08 Score=92.63 Aligned_cols=147 Identities=21% Similarity=0.223 Sum_probs=108.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
-...+|+|.|.|..+..+...+. ++-+++++...+..++..++ . .++.+-+|..+. .|. -|+|++.++++|
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp-~ik~infdlp~v~~~a~~~~-~----gV~~v~gdmfq~-~P~--~daI~mkWiLhd 248 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYP-HIKGINFDLPFVLAAAPYLA-P----GVEHVAGDMFQD-TPK--GDAIWMKWILHD 248 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCC-CCceeecCHHHHHhhhhhhc-C----Ccceeccccccc-CCC--cCeEEEEeeccc
Confidence 47899999999999999998654 68999999888887776653 2 377888887765 443 369999999999
Q ss_pred CCCH--HHHHHHHHHhcCCCCEEEEEeccCCCCCCCc---cccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCce
Q 016981 239 MPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSE---ESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLED 313 (379)
Q Consensus 239 ~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 313 (379)
++|. .++|++++..|+|||.+++.+...+...... .........++........ -.+..+++.++.++||.+
T Consensus 249 wtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gk---ert~~e~q~l~~~~gF~~ 325 (342)
T KOG3178|consen 249 WTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGK---ERTLKEFQALLPEEGFPV 325 (342)
T ss_pred CChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccce---eccHHHHHhcchhhcCce
Confidence 9876 7999999999999999999997555422221 1122222222222333222 237999999999999998
Q ss_pred eEEE
Q 016981 314 IKAE 317 (379)
Q Consensus 314 v~~~ 317 (379)
..+.
T Consensus 326 ~~~~ 329 (342)
T KOG3178|consen 326 CMVA 329 (342)
T ss_pred eEEE
Confidence 7764
No 163
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.01 E-value=1.2e-09 Score=99.99 Aligned_cols=102 Identities=24% Similarity=0.305 Sum_probs=84.3
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
+++.|||+|||||.++...++.+..+|+++|.|..+ +.|++.+..+++.+.+++..+.+++..+|.++.|+|++-++-+
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence 489999999999999999999866789999998755 9999999999998889999999999866678999999866554
Q ss_pred CC--C-CHHHHHHHHHHhcCCCCEEE
Q 016981 238 HM--P-DKSKFVSELARVTAPAGTII 260 (379)
Q Consensus 238 ~~--~-~~~~~l~~~~r~LkpgG~l~ 260 (379)
.+ . -...+|-.=-+.|+|||.++
T Consensus 139 ~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 139 FLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHhhhhhhhhhhhhhccCCCceEc
Confidence 44 1 22455555568999999875
No 164
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.00 E-value=4.3e-09 Score=94.26 Aligned_cols=115 Identities=18% Similarity=0.248 Sum_probs=91.4
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcc
Q 016981 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216 (379)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d 216 (379)
.+++..+++..+ ..+|||||+++|..+..++... +++|+.+|.++...+.|++.++..|+.++++++.+|
T Consensus 68 g~lL~~l~~~~~--------ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~ 139 (247)
T PLN02589 68 GQFLNMLLKLIN--------AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGP 139 (247)
T ss_pred HHHHHHHHHHhC--------CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEecc
Confidence 345555555543 7899999999999999999865 579999999999999999999999998999999999
Q ss_pred CCCC-C-C-----CCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 217 ALQQ-P-F-----PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 217 ~~~~-~-~-----~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+.+. + + ..++||+|+.-.-= ......+..+.++|+|||.+++-..
T Consensus 140 a~e~L~~l~~~~~~~~~fD~iFiDadK---~~Y~~y~~~~l~ll~~GGviv~DNv 191 (247)
T PLN02589 140 ALPVLDQMIEDGKYHGTFDFIFVDADK---DNYINYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_pred HHHHHHHHHhccccCCcccEEEecCCH---HHhHHHHHHHHHhcCCCeEEEEcCC
Confidence 8663 2 1 13689999975331 2236778888999999999877543
No 165
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.99 E-value=1.1e-09 Score=100.08 Aligned_cols=105 Identities=17% Similarity=0.229 Sum_probs=81.5
Q ss_pred CCEEEEeCCcccH----HHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHH------------------HH-----cC-
Q 016981 159 PKNVVDVGCGIGG----SSRYLAKKF-----GAKCQGITLSPVQAQRANALA------------------AA-----RG- 205 (379)
Q Consensus 159 ~~~vLDiGcGtG~----~~~~l~~~~-----~~~v~gvD~s~~~~~~a~~~~------------------~~-----~~- 205 (379)
..+|+..||+||. +++.+.+.. ..+|+|+|+|+.+++.|++-. .. .+
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 5899999999997 445555532 257999999999999998741 00 00
Q ss_pred ------CCCCeEEEEccCCCCCCC-CCcccEEEeccccCCCCC--HHHHHHHHHHhcCCCCEEEEEe
Q 016981 206 ------LADKVSFQVGDALQQPFP-DGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 206 ------~~~~i~~~~~d~~~~~~~-~~~fD~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+...|.|...|+.+.+++ .+.||+|+|.+++.|+.. ..++++++++.|+|||+|++..
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 224688999998875543 578999999999999954 5899999999999999987754
No 166
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.99 E-value=1.1e-09 Score=94.18 Aligned_cols=136 Identities=19% Similarity=0.193 Sum_probs=98.7
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCC-CCCeEEEEccCCCC--CCCCCcccEEEec
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGL-ADKVSFQVGDALQQ--PFPDGQFDLVWSM 233 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~-~~~i~~~~~d~~~~--~~~~~~fD~V~~~ 233 (379)
.+.+|||...|-|..++..+++ |+ +|+.++.+|..++.|.-+--..++ ..++.++.+|+.+. .|+|.+||+|+--
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHD 212 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHD 212 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHc-CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeC
Confidence 4899999999999999999998 66 999999999999887754322111 13578999998875 5889999999842
Q ss_pred c-ccCCCCC--HHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCC
Q 016981 234 E-SGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLS 310 (379)
Q Consensus 234 ~-~l~~~~~--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 310 (379)
- =|.+... ..++.++++|+|||||+++-..-.+.... . + .--+..+.+.|+++|
T Consensus 213 PPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ry------------------r--G---~d~~~gVa~RLr~vG 269 (287)
T COG2521 213 PPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRY------------------R--G---LDLPKGVAERLRRVG 269 (287)
T ss_pred CCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCccc------------------c--c---CChhHHHHHHHHhcC
Confidence 1 1111112 27899999999999999987653222110 0 0 113667889999999
Q ss_pred CceeEEE
Q 016981 311 LEDIKAE 317 (379)
Q Consensus 311 F~~v~~~ 317 (379)
|.+|...
T Consensus 270 F~~v~~~ 276 (287)
T COG2521 270 FEVVKKV 276 (287)
T ss_pred ceeeeee
Confidence 9987654
No 167
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.99 E-value=4.1e-09 Score=93.05 Aligned_cols=103 Identities=24% Similarity=0.352 Sum_probs=88.3
Q ss_pred CEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC--C-CCCCcccEEEeccc
Q 016981 160 KNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--P-FPDGQFDLVWSMES 235 (379)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~-~~~~~fD~V~~~~~ 235 (379)
..+||||||.|.+...+|++. ...++|||+....+..|.+++.+.++. |+.+++.|+..+ - +++++.|-|+.++.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 589999999999999999998 678999999999999999999999884 999999998775 2 44569999998765
Q ss_pred cCCCCCH--------HHHHHHHHHhcCCCCEEEEEe
Q 016981 236 GEHMPDK--------SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 236 l~~~~~~--------~~~l~~~~r~LkpgG~l~i~~ 263 (379)
=-|.... ..+++.+.++|||||.|.+.+
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 5444322 579999999999999999976
No 168
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.97 E-value=9e-08 Score=86.26 Aligned_cols=165 Identities=20% Similarity=0.216 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH---cC--------
Q 016981 137 AQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAA---RG-------- 205 (379)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~-------- 205 (379)
....+++.+-+..+... ......+||--|||.|+++..++.+ |..+.|.|.|--|+-..+-.+.. .+
T Consensus 36 ~~~~I~~~L~~~~p~~~-~~~~~~~VLVPGsGLGRLa~Eia~~-G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~ 113 (270)
T PF07942_consen 36 CYSPILDELESLFPPAG-SDRSKIRVLVPGSGLGRLAWEIAKL-GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFV 113 (270)
T ss_pred HHHHHHHHHHHhhcccc-cCCCccEEEEcCCCcchHHHHHhhc-cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecce
Confidence 33444555544443211 1234679999999999999999998 88999999999997665553321 00
Q ss_pred ----------------------------CCCCeEEEEccCCCCCCCC---CcccEEEeccccCCCCCHHHHHHHHHHhcC
Q 016981 206 ----------------------------LADKVSFQVGDALQQPFPD---GQFDLVWSMESGEHMPDKSKFVSELARVTA 254 (379)
Q Consensus 206 ----------------------------~~~~i~~~~~d~~~~~~~~---~~fD~V~~~~~l~~~~~~~~~l~~~~r~Lk 254 (379)
.+.++....+|+.+.-.++ ++||+|+..+.+.-.++....++.|.++||
T Consensus 114 ~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLk 193 (270)
T PF07942_consen 114 HSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLK 193 (270)
T ss_pred ecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhc
Confidence 1235666777776653333 789999999888888899999999999999
Q ss_pred CCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEEe
Q 016981 255 PAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAED 318 (379)
Q Consensus 255 pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 318 (379)
|||..+=..+..-...+.. ......+ -++.+++..++++.||+++..+.
T Consensus 194 pgG~WIN~GPLlyh~~~~~-------------~~~~~sv--eLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 194 PGGYWINFGPLLYHFEPMS-------------IPNEMSV--ELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred cCCEEEecCCccccCCCCC-------------CCCCccc--CCCHHHHHHHHHHCCCEEEEEEE
Confidence 9997665553322211110 0000001 24899999999999999987765
No 169
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.94 E-value=2.4e-08 Score=88.02 Aligned_cols=106 Identities=19% Similarity=0.203 Sum_probs=82.9
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-----CCCCCcccEEEe
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----PFPDGQFDLVWS 232 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~fD~V~~ 232 (379)
+..|||+|||+|..+..++... .+.|+++|.|+.++..|.+++++.++..++.++..+++.. +...+++|++++
T Consensus 149 ~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvs 228 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVS 228 (328)
T ss_pred cceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEec
Confidence 5689999999999999999877 6899999999999999999999999888888886655432 345689999998
Q ss_pred ccccCCCCC--------------------------HHHHHHHHHHhcCCCCEEEEEec
Q 016981 233 MESGEHMPD--------------------------KSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 233 ~~~l~~~~~--------------------------~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+=-.-.-.| ...++.-+.|.|+|||.+.+...
T Consensus 229 NPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 229 NPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred CCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 643211111 12355667899999999888653
No 170
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.93 E-value=1.8e-08 Score=92.78 Aligned_cols=104 Identities=20% Similarity=0.234 Sum_probs=85.2
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-cCCCCCCCCCcccEEEecccc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVG-DALQQPFPDGQFDLVWSMESG 236 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~fD~V~~~~~l 236 (379)
+|..|||-=||||.+++.+.-. |++++|.|++..|+.-|+.+++..++. ...+... |+..+|+++.++|.|++---.
T Consensus 197 ~G~~vlDPFcGTGgiLiEagl~-G~~viG~Did~~mv~gak~Nl~~y~i~-~~~~~~~~Da~~lpl~~~~vdaIatDPPY 274 (347)
T COG1041 197 RGELVLDPFCGTGGILIEAGLM-GARVIGSDIDERMVRGAKINLEYYGIE-DYPVLKVLDATNLPLRDNSVDAIATDPPY 274 (347)
T ss_pred cCCEeecCcCCccHHHHhhhhc-CceEeecchHHHHHhhhhhhhhhhCcC-ceeEEEecccccCCCCCCccceEEecCCC
Confidence 3889999999999999987764 999999999999999999999988764 4544554 999999988889999974322
Q ss_pred CCC-----CC----HHHHHHHHHHhcCCCCEEEEEe
Q 016981 237 EHM-----PD----KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 237 ~~~-----~~----~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.-. .. ..++|+.+.++||+||++++..
T Consensus 275 Grst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~ 310 (347)
T COG1041 275 GRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAA 310 (347)
T ss_pred CcccccccccHHHHHHHHHHHHHHHhhcCcEEEEec
Confidence 211 11 2678999999999999999865
No 171
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.92 E-value=8.4e-09 Score=95.16 Aligned_cols=93 Identities=20% Similarity=0.302 Sum_probs=75.0
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
..++.+++.+...+ +.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++...+..++++++.+|+.+
T Consensus 23 ~i~~~Iv~~~~~~~-----~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~ 96 (294)
T PTZ00338 23 LVLDKIVEKAAIKP-----TDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALK 96 (294)
T ss_pred HHHHHHHHhcCCCC-----cCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhh
Confidence 36667777766654 889999999999999999987 678999999999999999998876655689999999987
Q ss_pred CCCCCCcccEEEeccccCCCCC
Q 016981 220 QPFPDGQFDLVWSMESGEHMPD 241 (379)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~~~ 241 (379)
.++ ..||.|+++- -+++..
T Consensus 97 ~~~--~~~d~VvaNl-PY~Ist 115 (294)
T PTZ00338 97 TEF--PYFDVCVANV-PYQISS 115 (294)
T ss_pred hcc--cccCEEEecC-CcccCc
Confidence 664 3689888753 344433
No 172
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.91 E-value=6.4e-09 Score=95.39 Aligned_cols=85 Identities=22% Similarity=0.277 Sum_probs=68.2
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 220 (379)
.++.+++.+.... +.+|||+|||+|.++..++++ +.+|+|+|+++.|++.+++++.. +++.++++|+.+.
T Consensus 30 i~~~i~~~l~~~~-----~~~VLEiG~G~G~lt~~L~~~-~~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~ 99 (272)
T PRK00274 30 ILDKIVDAAGPQP-----GDNVLEIGPGLGALTEPLLER-AAKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKV 99 (272)
T ss_pred HHHHHHHhcCCCC-----cCeEEEeCCCccHHHHHHHHh-CCcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcC
Confidence 5566666666554 789999999999999999998 45999999999999999987642 5899999999988
Q ss_pred CCCCCcccEEEeccc
Q 016981 221 PFPDGQFDLVWSMES 235 (379)
Q Consensus 221 ~~~~~~fD~V~~~~~ 235 (379)
++++-.+|.|+++--
T Consensus 100 ~~~~~~~~~vv~NlP 114 (272)
T PRK00274 100 DLSELQPLKVVANLP 114 (272)
T ss_pred CHHHcCcceEEEeCC
Confidence 764322578877643
No 173
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.91 E-value=2.1e-08 Score=97.54 Aligned_cols=100 Identities=24% Similarity=0.304 Sum_probs=76.5
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEec
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-----GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSM 233 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~ 233 (379)
+..|||||||+|.++...++.. ..+|++|+-++.+....++++..+++.++|+++.+|+++...+ .++|+||+=
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP-EKVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEEe
Confidence 5789999999999987766543 3589999999999988888878888888999999999998654 589999963
Q ss_pred cccCCC---CCHHHHHHHHHHhcCCCCEEE
Q 016981 234 ESGEHM---PDKSKFVSELARVTAPAGTII 260 (379)
Q Consensus 234 ~~l~~~---~~~~~~l~~~~r~LkpgG~l~ 260 (379)
.+..+ .-..+.|....|.|||||.++
T Consensus 266 -lLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 -LLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred -ccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 33333 223678889999999998764
No 174
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.90 E-value=1.1e-08 Score=93.19 Aligned_cols=87 Identities=29% Similarity=0.393 Sum_probs=71.4
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
..++.+++.++... +.+|||+|||+|.++..++++ +.+|+|+|+++.+++.+++++.. .+++.++.+|+.+
T Consensus 16 ~~~~~iv~~~~~~~-----~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~~~ 86 (258)
T PRK14896 16 RVVDRIVEYAEDTD-----GDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDALK 86 (258)
T ss_pred HHHHHHHHhcCCCC-----cCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhcc---CCCEEEEEecccc
Confidence 35666666666554 889999999999999999998 67999999999999999988754 2589999999988
Q ss_pred CCCCCCcccEEEeccccC
Q 016981 220 QPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~ 237 (379)
.+++ .||.|+++-..+
T Consensus 87 ~~~~--~~d~Vv~NlPy~ 102 (258)
T PRK14896 87 VDLP--EFNKVVSNLPYQ 102 (258)
T ss_pred CCch--hceEEEEcCCcc
Confidence 7764 489998875543
No 175
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.88 E-value=3.2e-08 Score=80.85 Aligned_cols=114 Identities=18% Similarity=0.177 Sum_probs=92.4
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 218 (379)
..+.+.+..+..+ +.-|||+|.|||.++..+.++. ...++.++.|++.....+++. +.++++.+|+.
T Consensus 36 lA~~M~s~I~pes-----glpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~------p~~~ii~gda~ 104 (194)
T COG3963 36 LARKMASVIDPES-----GLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY------PGVNIINGDAF 104 (194)
T ss_pred HHHHHHhccCccc-----CCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC------CCccccccchh
Confidence 3444555555544 8899999999999999999886 568999999999999888765 45778999987
Q ss_pred CCC-----CCCCcccEEEeccccCCCCC--HHHHHHHHHHhcCCCCEEEEEecc
Q 016981 219 QQP-----FPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 219 ~~~-----~~~~~fD~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
++. +.+..||.|++.--+-.++- ..++|+++...|.+||.++...+.
T Consensus 105 ~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 105 DLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred hHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 763 55678999999887777753 368899999999999999988765
No 176
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.87 E-value=2.4e-08 Score=86.33 Aligned_cols=104 Identities=9% Similarity=-0.070 Sum_probs=77.6
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-C-C-CCC-cccEEEecc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-F-PDG-QFDLVWSME 234 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~-~~~-~fD~V~~~~ 234 (379)
+.+|||++||+|.++..++.+....|+++|.++.+++.++++++..+...++.++.+|+.+. . + ... .||+|+..=
T Consensus 50 g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DP 129 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDP 129 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECc
Confidence 78999999999999999999854589999999999999999999988766799999998553 2 2 122 367777543
Q ss_pred ccCCCCCHHHHHHHHH--HhcCCCCEEEEEe
Q 016981 235 SGEHMPDKSKFVSELA--RVTAPAGTIIIVT 263 (379)
Q Consensus 235 ~l~~~~~~~~~l~~~~--r~LkpgG~l~i~~ 263 (379)
-+. -.....++..+. .+|+++|.+++-.
T Consensus 130 Py~-~~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 130 PFF-NGALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred CCC-CCcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 322 233355555554 3688888776644
No 177
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.87 E-value=3.7e-08 Score=84.46 Aligned_cols=111 Identities=27% Similarity=0.319 Sum_probs=81.4
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCE---------EEEEeCCHHHHHHHHHHHHHcCCCCCe
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAK---------CQGITLSPVQAQRANALAAARGLADKV 210 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~---------v~gvD~s~~~~~~a~~~~~~~~~~~~i 210 (379)
+...++...+... +..|||--||+|.+.++.+... ... ++|.|+++.+++.|++++...++...+
T Consensus 16 lA~~ll~la~~~~-----~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i 90 (179)
T PF01170_consen 16 LAAALLNLAGWRP-----GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYI 90 (179)
T ss_dssp HHHHHHHHTT--T-----TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGE
T ss_pred HHHHHHHHhCCCC-----CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCce
Confidence 3334445555544 8899999999999998887665 334 889999999999999999999988889
Q ss_pred EEEEccCCCCCCCCCcccEEEeccccCCC-CCH-------HHHHHHHHHhcCCC
Q 016981 211 SFQVGDALQQPFPDGQFDLVWSMESGEHM-PDK-------SKFVSELARVTAPA 256 (379)
Q Consensus 211 ~~~~~d~~~~~~~~~~fD~V~~~~~l~~~-~~~-------~~~l~~~~r~Lkpg 256 (379)
.+...|+.++++.++++|+|+++--...- .+. ..+++++.++|++.
T Consensus 91 ~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~ 144 (179)
T PF01170_consen 91 DFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPR 144 (179)
T ss_dssp EEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTC
T ss_pred EEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCC
Confidence 99999999999778899999998665542 211 45678888999993
No 178
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.87 E-value=2.1e-08 Score=90.59 Aligned_cols=105 Identities=19% Similarity=0.295 Sum_probs=81.9
Q ss_pred CCEEEEeCCcccH----HHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHH-----cC------------------
Q 016981 159 PKNVVDVGCGIGG----SSRYLAKKF------GAKCQGITLSPVQAQRANALAAA-----RG------------------ 205 (379)
Q Consensus 159 ~~~vLDiGcGtG~----~~~~l~~~~------~~~v~gvD~s~~~~~~a~~~~~~-----~~------------------ 205 (379)
..+|.-.||+||. +++.+.+.+ ..+|+|+|+|..+++.|+.-.-. .+
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 7899999999996 455555554 25899999999999999752110 11
Q ss_pred -----CCCCeEEEEccCCCCCCCCCcccEEEeccccCCCCCH--HHHHHHHHHhcCCCCEEEEEe
Q 016981 206 -----LADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 206 -----~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+-..|.|...|+...++..+.||+|+|.+|+.++..+ .+++..++..|+|||.|++-.
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 1134788888887765345789999999999999654 789999999999999999854
No 179
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.87 E-value=3.4e-08 Score=94.70 Aligned_cols=100 Identities=21% Similarity=0.197 Sum_probs=78.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-CCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~V~~~~~l~ 237 (379)
+.+|||+|||+|.++..++.. +.+|+|+|+++.+++.|+++++.+++ ++++|..+|+.+.. ...++||+|++.=--.
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~-~~~v~~vE~~~~av~~a~~N~~~~~~-~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~ 311 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGP-DTQLTGIEIESEAIACAQQSAQMLGL-DNLSFAALDSAKFATAQMSAPELVLVNPPRR 311 (374)
T ss_pred CCEEEEccCCccHHHHHHhhc-CCeEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHHhcCCCCCEEEECCCCC
Confidence 679999999999999999976 67999999999999999999999887 48999999987642 1124699998763221
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 238 HMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.-...+++.+. .++|++.++++.
T Consensus 312 --G~~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 312 --GIGKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred --CCcHHHHHHHH-hcCCCeEEEEEe
Confidence 11245566665 479998888864
No 180
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.86 E-value=3.1e-08 Score=85.23 Aligned_cols=121 Identities=14% Similarity=0.214 Sum_probs=90.4
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCC---CCcccEEEecc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP---DGQFDLVWSME 234 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~fD~V~~~~ 234 (379)
...++|||||=+......... -..|+.||+.+. .-.+.+.|+.+.|.| ++.||+|.++.
T Consensus 51 ~~lrlLEVGals~~N~~s~~~--~fdvt~IDLns~----------------~~~I~qqDFm~rplp~~~~e~FdvIs~SL 112 (219)
T PF11968_consen 51 PKLRLLEVGALSTDNACSTSG--WFDVTRIDLNSQ----------------HPGILQQDFMERPLPKNESEKFDVISLSL 112 (219)
T ss_pred ccceEEeecccCCCCcccccC--ceeeEEeecCCC----------------CCCceeeccccCCCCCCcccceeEEEEEE
Confidence 357999999976554333222 236999999762 234577888887653 67899999999
Q ss_pred ccCCCCCH---HHHHHHHHHhcCCCCE-----EEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 016981 235 SGEHMPDK---SKFVSELARVTAPAGT-----IIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLL 306 (379)
Q Consensus 235 ~l~~~~~~---~~~l~~~~r~LkpgG~-----l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 306 (379)
||.+++++ -+.++.+.+.|+|+|. |+++.+..- + ...++.+.+.+.++|
T Consensus 113 VLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C----------------v-------~NSRy~~~~~l~~im 169 (219)
T PF11968_consen 113 VLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC----------------V-------TNSRYMTEERLREIM 169 (219)
T ss_pred EEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH----------------h-------hcccccCHHHHHHHH
Confidence 99999987 5799999999999999 888753210 0 012356899999999
Q ss_pred HhCCCceeEEEec
Q 016981 307 QSLSLEDIKAEDW 319 (379)
Q Consensus 307 ~~aGF~~v~~~~~ 319 (379)
+..||+.+..+.-
T Consensus 170 ~~LGf~~~~~~~~ 182 (219)
T PF11968_consen 170 ESLGFTRVKYKKS 182 (219)
T ss_pred HhCCcEEEEEEec
Confidence 9999999887543
No 181
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.83 E-value=5.1e-08 Score=88.56 Aligned_cols=103 Identities=25% Similarity=0.355 Sum_probs=75.0
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
..+..+++.++... +.+|||+|||+|.++..++++ +..|+++|+++.+++.+++++.. .+++.++.+|+..
T Consensus 16 ~i~~~i~~~~~~~~-----~~~VLEiG~G~G~lt~~L~~~-~~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~ 86 (253)
T TIGR00755 16 SVIQKIVEAANVLE-----GDVVLEIGPGLGALTEPLLKR-AKKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALK 86 (253)
T ss_pred HHHHHHHHhcCCCC-----cCEEEEeCCCCCHHHHHHHHh-CCcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhc
Confidence 35666777666554 889999999999999999998 46899999999999999987643 2589999999988
Q ss_pred CCCCCCccc---EEEeccccCCCCCHHHHHHHHHHhcCCCCE
Q 016981 220 QPFPDGQFD---LVWSMESGEHMPDKSKFVSELARVTAPAGT 258 (379)
Q Consensus 220 ~~~~~~~fD---~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~ 258 (379)
.+++ .|| +|+++-. +|+. ..++.++.. .+|+.
T Consensus 87 ~~~~--~~d~~~~vvsNlP-y~i~--~~il~~ll~--~~~~~ 121 (253)
T TIGR00755 87 VDLP--DFPKQLKVVSNLP-YNIS--SPLIFKLLE--KPKFR 121 (253)
T ss_pred CChh--HcCCcceEEEcCC-hhhH--HHHHHHHhc--cCCCc
Confidence 8764 466 6665533 3332 344444443 44443
No 182
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.83 E-value=7.1e-08 Score=87.17 Aligned_cols=102 Identities=25% Similarity=0.296 Sum_probs=81.0
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
.++.|||+|||+|+++...+.....+|++++.| +|.+.|++..+.+.+.+++.++.+-+++..+| ++.|+|++--+-.
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG~ 254 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMGY 254 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccchh
Confidence 478999999999999999988866789999997 59999999999988889999999999998775 7799998643322
Q ss_pred CCCCH--HHHHHHHHHhcCCCCEEEE
Q 016981 238 HMPDK--SKFVSELARVTAPAGTIII 261 (379)
Q Consensus 238 ~~~~~--~~~l~~~~r~LkpgG~l~i 261 (379)
.+-+. .+..-.+++.|||.|.++=
T Consensus 255 mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 255 MLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred hhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 22221 2333346799999998754
No 183
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.80 E-value=4.6e-09 Score=100.44 Aligned_cols=100 Identities=25% Similarity=0.405 Sum_probs=72.7
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEE---eCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGI---TLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (379)
-..+||+|||+|.++..|.++ +..+..+ |..+.+++.|-+ .|+|.-+ -..-...+||+++.||+|+|..+
T Consensus 118 iR~~LDvGcG~aSF~a~l~~r-~V~t~s~a~~d~~~~qvqfale----RGvpa~~--~~~~s~rLPfp~~~fDmvHcsrc 190 (506)
T PF03141_consen 118 IRTALDVGCGVASFGAYLLER-NVTTMSFAPNDEHEAQVQFALE----RGVPAMI--GVLGSQRLPFPSNAFDMVHCSRC 190 (506)
T ss_pred eEEEEeccceeehhHHHHhhC-CceEEEcccccCCchhhhhhhh----cCcchhh--hhhccccccCCccchhhhhcccc
Confidence 467999999999999999987 4333332 444556666654 3554322 12233678999999999999988
Q ss_pred cCCC-CCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 236 GEHM-PDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 236 l~~~-~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
+... ++..-+|-++.|+|+|||+++++...
T Consensus 191 ~i~W~~~~g~~l~evdRvLRpGGyfv~S~pp 221 (506)
T PF03141_consen 191 LIPWHPNDGFLLFEVDRVLRPGGYFVLSGPP 221 (506)
T ss_pred cccchhcccceeehhhhhhccCceEEecCCc
Confidence 7654 33356899999999999999998743
No 184
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=2.1e-07 Score=82.04 Aligned_cols=112 Identities=18% Similarity=0.250 Sum_probs=93.1
Q ss_pred HHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
+..++..+.+.+ +.+|||-|+|+|.++.++++.. -++++-+|+...-.+.|++.+++.|+++++.+.+-|+..
T Consensus 94 ia~I~~~L~i~P-----GsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~ 168 (314)
T KOG2915|consen 94 IAMILSMLEIRP-----GSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCG 168 (314)
T ss_pred HHHHHHHhcCCC-----CCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeeccc
Confidence 344555556665 9999999999999999999987 369999999999999999999999999999999999988
Q ss_pred CCCC--CCcccEEEeccccCCCCCHHHHHHHHHHhcCCCC-EEEEEe
Q 016981 220 QPFP--DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAG-TIIIVT 263 (379)
Q Consensus 220 ~~~~--~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG-~l~i~~ 263 (379)
..|. +..+|.|+. -++.|..++-.++.+||.+| +++...
T Consensus 169 ~GF~~ks~~aDaVFL-----DlPaPw~AiPha~~~lk~~g~r~csFS 210 (314)
T KOG2915|consen 169 SGFLIKSLKADAVFL-----DLPAPWEAIPHAAKILKDEGGRLCSFS 210 (314)
T ss_pred CCccccccccceEEE-----cCCChhhhhhhhHHHhhhcCceEEecc
Confidence 7543 567888876 56788888999999999887 554433
No 185
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.77 E-value=9.4e-08 Score=94.98 Aligned_cols=126 Identities=14% Similarity=0.190 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHcCCCCC--CCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEE
Q 016981 137 AQVRMIEETLRFAGVSED--PTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQ 213 (379)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~--~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~ 213 (379)
.+++.++..+..+.+... .......+||||||.|.++..+|... ...++|+|++..-+..+.++....++ .|+.+.
T Consensus 324 ~q~~~~e~~~p~~~i~~eklf~~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l-~N~~~~ 402 (506)
T PRK01544 324 VQQNLLDNELPKYLFSKEKLVNEKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI-TNFLLF 402 (506)
T ss_pred HHHHHHHhhhhhhCCCHHHhCCCCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC-CeEEEE
Confidence 555566666665554321 12246789999999999999999998 67899999999999998888888877 589888
Q ss_pred EccCCCC--CCCCCcccEEEeccccCCCCCH--------HHHHHHHHHhcCCCCEEEEEe
Q 016981 214 VGDALQQ--PFPDGQFDLVWSMESGEHMPDK--------SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 214 ~~d~~~~--~~~~~~fD~V~~~~~l~~~~~~--------~~~l~~~~r~LkpgG~l~i~~ 263 (379)
..|+..+ -++++++|.|+.++.=-|.... ..+++.++++|||||.+.+.+
T Consensus 403 ~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 403 PNNLDLILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred cCCHHHHHHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 8887543 3678899999987665554321 579999999999999999876
No 186
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=6.5e-08 Score=82.09 Aligned_cols=100 Identities=22% Similarity=0.305 Sum_probs=79.4
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcC--------C-CCCeEEEEccCCCCCCCCC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARG--------L-ADKVSFQVGDALQQPFPDG 225 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~--------~-~~~i~~~~~d~~~~~~~~~ 225 (379)
|+.+.||+|.|||.++..++... |..++|||.-++.++.+++++...- + ..++.++++|.....-+..
T Consensus 82 pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a 161 (237)
T KOG1661|consen 82 PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQA 161 (237)
T ss_pred cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccC
Confidence 49999999999999999888766 3455999999999999999876542 1 1468889999888755678
Q ss_pred cccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 226 QFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 226 ~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+||.|++... .....+++...|+|||++++-.
T Consensus 162 ~YDaIhvGAa------a~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 162 PYDAIHVGAA------ASELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred CcceEEEccC------ccccHHHHHHhhccCCeEEEee
Confidence 9999998732 2445667778899999998854
No 187
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.74 E-value=7.3e-08 Score=86.37 Aligned_cols=145 Identities=14% Similarity=0.088 Sum_probs=92.1
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC----------------C-----------CCe
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL----------------A-----------DKV 210 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----------------~-----------~~i 210 (379)
++.++||||||.-..-..-+...-.+++..|.++...+..++-++..+. . ..|
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~V 135 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAV 135 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHE
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhh
Confidence 4789999999986553333333335899999999988866665433220 0 013
Q ss_pred -EEEEccCCCC-CCCC-----CcccEEEeccccCCC-CCH---HHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchH
Q 016981 211 -SFQVGDALQQ-PFPD-----GQFDLVWSMESGEHM-PDK---SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPW 279 (379)
Q Consensus 211 -~~~~~d~~~~-~~~~-----~~fD~V~~~~~l~~~-~~~---~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~ 279 (379)
.++.+|+.+. |+.. .+||+|++..+++.. +|. ..+++++.++|||||.|++...........-
T Consensus 136 k~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG------ 209 (256)
T PF01234_consen 136 KQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVG------ 209 (256)
T ss_dssp EEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEET------
T ss_pred ceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEEC------
Confidence 3677888775 3432 359999999999876 344 6889999999999999999886443211000
Q ss_pred HHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEE
Q 016981 280 EQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (379)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 317 (379)
...+.. -..+.+.+++.|+++||++++.+
T Consensus 210 --------~~~F~~-l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 210 --------GHKFPC-LPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp --------TEEEE----B-HHHHHHHHHHTTEEEEEEE
T ss_pred --------CEeccc-ccCCHHHHHHHHHHcCCEEEecc
Confidence 000111 12478999999999999988876
No 188
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=1.6e-06 Score=72.10 Aligned_cols=125 Identities=17% Similarity=0.268 Sum_probs=92.7
Q ss_pred CCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (379)
..-+||||||+|..+..|++.. +..+.++|++|.+++..++.+..++. ++..++.|+.+-- ..++.|+++.+--.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l-~~~~VDvLvfNPPY 120 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGL-RNESVDVLVFNPPY 120 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhh-ccCCccEEEECCCc
Confidence 6789999999999999999877 46789999999999999988887765 5788888876532 23889988865332
Q ss_pred CCCC-----------------C----HHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCC
Q 016981 237 EHMP-----------------D----KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPA 295 (379)
Q Consensus 237 ~~~~-----------------~----~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (379)
.--+ + .++++..+-.+|.|.|++++.....+
T Consensus 121 Vpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N---------------------------- 172 (209)
T KOG3191|consen 121 VPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN---------------------------- 172 (209)
T ss_pred CcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc----------------------------
Confidence 2111 1 14566667778889999988763111
Q ss_pred CCCHHHHHHHHHhCCCceeEE
Q 016981 296 WCSTADYVKLLQSLSLEDIKA 316 (379)
Q Consensus 296 ~~~~~~~~~~l~~aGF~~v~~ 316 (379)
.++++-+.++.-||.....
T Consensus 173 --~p~ei~k~l~~~g~~~~~~ 191 (209)
T KOG3191|consen 173 --KPKEILKILEKKGYGVRIA 191 (209)
T ss_pred --CHHHHHHHHhhcccceeEE
Confidence 4677778889999876544
No 189
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.73 E-value=6.4e-08 Score=83.86 Aligned_cols=98 Identities=20% Similarity=0.221 Sum_probs=76.1
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecccc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (379)
++.+|+|+-||.|.++..+++.. +..|+++|++|.+++..+++++.+++..++....+|..+... .+.||.|++...
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~lp- 178 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNLP- 178 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--T-
T ss_pred cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECCh-
Confidence 38999999999999999999844 678999999999999999999999998889999999988754 688999988642
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEE
Q 016981 237 EHMPDKSKFVSELARVTAPAGTII 260 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~ 260 (379)
.....+|..+.+++|+||.+-
T Consensus 179 ---~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 179 ---ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp ---SSGGGGHHHHHHHEEEEEEEE
T ss_pred ---HHHHHHHHHHHHHhcCCcEEE
Confidence 223568889999999999863
No 190
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.72 E-value=1.2e-07 Score=90.58 Aligned_cols=100 Identities=17% Similarity=0.129 Sum_probs=82.2
Q ss_pred CCEEEEeCCcccHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
+.+|||++||+|..+..++...+ .+|+++|+++.+++.++++++.+++ .++.+...|+..+....+.||+|++.- .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~-~~~~v~~~Da~~~l~~~~~fD~V~lDP-~- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL-ENEKVFNKDANALLHEERKFDVVDIDP-F- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CceEEEhhhHHHHHhhcCCCCEEEECC-C-
Confidence 46899999999999999988764 4899999999999999999998887 467789999876421146799998752 2
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 238 HMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
..+..++..+.+.+++||.++++.
T Consensus 135 --Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 135 --GSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred --CCcHHHHHHHHHHhcCCCEEEEEe
Confidence 445788888888899999999983
No 191
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.70 E-value=1.9e-07 Score=82.71 Aligned_cols=102 Identities=18% Similarity=0.224 Sum_probs=66.9
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHH-HHHHHHHcCCCCCe-EEEEccCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQR-ANALAAARGLADKV-SFQVGDAL 218 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~-a~~~~~~~~~~~~i-~~~~~d~~ 218 (379)
.+..++...++. .++.+|||+|||||.++..+++....+|+|+|+++.|+.. .++. +++ .+...|+.
T Consensus 62 kL~~~l~~~~~~----~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~-------~~v~~~~~~ni~ 130 (228)
T TIGR00478 62 KLKEALEEFNID----VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQD-------ERVKVLERTNIR 130 (228)
T ss_pred HHHHHHHhcCCC----CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcC-------CCeeEeecCCcc
Confidence 455666655432 2478999999999999999999744589999999988876 2221 232 23334444
Q ss_pred CCC-----CCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEE
Q 016981 219 QQP-----FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (379)
Q Consensus 219 ~~~-----~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~ 262 (379)
... ..-..+|+++++.. ..+..+.+.|+| |.+++.
T Consensus 131 ~~~~~~~~~d~~~~DvsfiS~~--------~~l~~i~~~l~~-~~~~~L 170 (228)
T TIGR00478 131 YVTPADIFPDFATFDVSFISLI--------SILPELDLLLNP-NDLTLL 170 (228)
T ss_pred cCCHhHcCCCceeeeEEEeehH--------hHHHHHHHHhCc-CeEEEE
Confidence 321 11135676665432 358889999999 766654
No 192
>PLN02823 spermine synthase
Probab=98.69 E-value=1.3e-07 Score=88.76 Aligned_cols=103 Identities=16% Similarity=0.197 Sum_probs=79.7
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC---CCCCeEEEEccCCCC-CCCCCcccEEEec
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG---LADKVSFQVGDALQQ-PFPDGQFDLVWSM 233 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~i~~~~~d~~~~-~~~~~~fD~V~~~ 233 (379)
+.+||.||+|.|..++.+.+.. ..+|+.+|+++.+++.|++.+...+ -.++++++.+|.... ....++||+|++-
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D 183 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIGD 183 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEec
Confidence 6799999999999999988854 4689999999999999999875321 136899999998764 3345789999976
Q ss_pred cccCCC----CC---HHHHHH-HHHHhcCCCCEEEEE
Q 016981 234 ESGEHM----PD---KSKFVS-ELARVTAPAGTIIIV 262 (379)
Q Consensus 234 ~~l~~~----~~---~~~~l~-~~~r~LkpgG~l~i~ 262 (379)
. .... +. ..++++ .+.+.|+|||.+++.
T Consensus 184 ~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 184 L-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred C-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 3 2211 10 256787 899999999998764
No 193
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.67 E-value=8.3e-07 Score=84.74 Aligned_cols=114 Identities=17% Similarity=0.151 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcc
Q 016981 137 AQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216 (379)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d 216 (379)
....+++.+.+.+... +.+|||++||+|.++..+++. ..+|+|+|+++.+++.|++++..+++ .++.|+.+|
T Consensus 191 ~~e~l~~~v~~~~~~~------~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~-~~v~~~~~d 262 (362)
T PRK05031 191 VNEKMLEWALDATKGS------KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGI-DNVQIIRMS 262 (362)
T ss_pred HHHHHHHHHHHHhhcC------CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEECC
Confidence 3445566666654311 357999999999999999887 46999999999999999999998887 489999999
Q ss_pred CCCC-C-CC--------------CCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 217 ALQQ-P-FP--------------DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 217 ~~~~-~-~~--------------~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+.+. + +. ..+||+|+..=- . ..-...+++.+.+ |++.++++-
T Consensus 263 ~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPP-R-~G~~~~~l~~l~~---~~~ivyvSC 320 (362)
T PRK05031 263 AEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPP-R-AGLDDETLKLVQA---YERILYISC 320 (362)
T ss_pred HHHHHHHHhhcccccccccccccCCCCCEEEECCC-C-CCCcHHHHHHHHc---cCCEEEEEe
Confidence 8763 1 10 125899986422 1 1112455555544 777777754
No 194
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.67 E-value=3.4e-07 Score=89.61 Aligned_cols=106 Identities=17% Similarity=0.215 Sum_probs=84.9
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-CCCCcccEEE---
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDLVW--- 231 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~V~--- 231 (379)
++.+|||+++|.|.-+..++... ...|+++|+++.-++..++++++.|+ .|+.+...|...++ ...+.||.|+
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~-~nv~v~~~D~~~~~~~~~~~fD~ILvDa 191 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV-SNVALTHFDGRVFGAALPETFDAILLDA 191 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence 48999999999999999999887 35899999999999999999999998 57888888887652 2246799999
Q ss_pred -ecc--ccCCCCCH----------------HHHHHHHHHhcCCCCEEEEEec
Q 016981 232 -SME--SGEHMPDK----------------SKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 232 -~~~--~l~~~~~~----------------~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
|+. ++..-++. .++|..+.++|||||+|+.++-
T Consensus 192 PCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTC 243 (470)
T PRK11933 192 PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTC 243 (470)
T ss_pred CCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 332 22221211 5688899999999999988774
No 195
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.67 E-value=8.3e-07 Score=82.52 Aligned_cols=146 Identities=14% Similarity=0.155 Sum_probs=98.0
Q ss_pred HHHccCc-hhHHHhhhccccccccCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHH
Q 016981 101 EFYDESS-SLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKK 179 (379)
Q Consensus 101 ~~yd~~~-~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~ 179 (379)
-+||..+ ..|+++.. .+.||..... ..........+.+.++ ++..|+|+|||+|.-+..|.+.
T Consensus 34 ~~YD~~Gs~LFe~It~---lpEYYptr~E------~~iL~~~~~~Ia~~i~-------~~~~lIELGsG~~~Kt~~LL~a 97 (319)
T TIGR03439 34 LLYDDEGLKLFEEITY---SPEYYLTNDE------IEILKKHSSDIAASIP-------SGSMLVELGSGNLRKVGILLEA 97 (319)
T ss_pred hhhcchHHHHHHHHHc---CCccCChHHH------HHHHHHHHHHHHHhcC-------CCCEEEEECCCchHHHHHHHHH
Confidence 3566553 44666543 3567765432 2233344455555543 2678999999999987776665
Q ss_pred c-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEE--EEccCCCC----CC--CCCcccEEEecc-ccCCCCCH--H
Q 016981 180 F-----GAKCQGITLSPVQAQRANALAAARGLADKVSF--QVGDALQQ----PF--PDGQFDLVWSME-SGEHMPDK--S 243 (379)
Q Consensus 180 ~-----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~--~~~d~~~~----~~--~~~~fD~V~~~~-~l~~~~~~--~ 243 (379)
+ ...++++|+|..+++.+.+++..... +.+.+ +++|+.+. +- ......+|+..+ ++.+++.. .
T Consensus 98 L~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~-p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~ 176 (319)
T TIGR03439 98 LERQKKSVDYYALDVSRSELQRTLAELPLGNF-SHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAA 176 (319)
T ss_pred HHhcCCCceEEEEECCHHHHHHHHHhhhhccC-CCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHH
Confidence 4 35799999999999999999873333 34544 78887653 21 123456666554 88888654 5
Q ss_pred HHHHHHHH-hcCCCCEEEEEe
Q 016981 244 KFVSELAR-VTAPAGTIIIVT 263 (379)
Q Consensus 244 ~~l~~~~r-~LkpgG~l~i~~ 263 (379)
.+|+++++ .|+|||.|++..
T Consensus 177 ~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 177 AFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred HHHHHHHHhhCCCCCEEEEec
Confidence 88999999 999999988853
No 196
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.66 E-value=4.4e-07 Score=77.74 Aligned_cols=127 Identities=17% Similarity=0.184 Sum_probs=97.1
Q ss_pred EEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCCC
Q 016981 161 NVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHM 239 (379)
Q Consensus 161 ~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~ 239 (379)
+++|||+|.|.-++.++-.. ..+++.+|....-+...+......++ +|+.++...+++ +....+||+|+++.+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L-~nv~v~~~R~E~-~~~~~~fd~v~aRAv---- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL-SNVEVINGRAEE-PEYRESFDVVTARAV---- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT--SSEEEEES-HHH-TTTTT-EEEEEEESS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC-CCEEEEEeeecc-cccCCCccEEEeehh----
Confidence 89999999999999998877 67999999999999999999999998 489999999988 444688999999854
Q ss_pred CCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEEec
Q 016981 240 PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDW 319 (379)
Q Consensus 240 ~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 319 (379)
.....++.-+...|++||.+++.--. .... ..++.+..++..|.+...+..+
T Consensus 125 ~~l~~l~~~~~~~l~~~G~~l~~KG~----------------~~~~------------El~~~~~~~~~~~~~~~~v~~~ 176 (184)
T PF02527_consen 125 APLDKLLELARPLLKPGGRLLAYKGP----------------DAEE------------ELEEAKKAWKKLGLKVLSVPEF 176 (184)
T ss_dssp SSHHHHHHHHGGGEEEEEEEEEEESS------------------HH------------HHHTHHHHHHCCCEEEEEEEEE
T ss_pred cCHHHHHHHHHHhcCCCCEEEEEcCC----------------ChHH------------HHHHHHhHHHHhCCEEeeeccc
Confidence 45588899999999999998886410 0000 1334566677788887777665
Q ss_pred CC
Q 016981 320 SQ 321 (379)
Q Consensus 320 ~~ 321 (379)
..
T Consensus 177 ~~ 178 (184)
T PF02527_consen 177 EL 178 (184)
T ss_dssp E-
T ss_pred cC
Confidence 44
No 197
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.66 E-value=9.5e-07 Score=83.99 Aligned_cols=114 Identities=17% Similarity=0.170 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcc
Q 016981 137 AQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216 (379)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d 216 (379)
....+++.+++.+... +.+|||++||+|.++..+++.. .+|+|+|+++.+++.|++++..+++ .++.|+.+|
T Consensus 182 ~~~~l~~~v~~~~~~~------~~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~-~~v~~~~~d 253 (353)
T TIGR02143 182 VNIKMLEWACEVTQGS------KGDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNI-DNVQIIRMS 253 (353)
T ss_pred HHHHHHHHHHHHhhcC------CCcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEEcC
Confidence 3445566666655321 3479999999999999999874 6999999999999999999999887 479999999
Q ss_pred CCCC-C-------C---C-----CCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 217 ALQQ-P-------F---P-----DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 217 ~~~~-~-------~---~-----~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+.+. + + . ...||+|+..=- .-.-...+++.+. +|++.++++.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPP--R~G~~~~~l~~l~---~~~~ivYvsC 311 (353)
T TIGR02143 254 AEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPP--RAGLDPDTCKLVQ---AYERILYISC 311 (353)
T ss_pred HHHHHHHHhhccccccccccccccCCCCEEEECCC--CCCCcHHHHHHHH---cCCcEEEEEc
Confidence 8763 1 0 0 113798886321 0111145555554 4778777764
No 198
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.66 E-value=1.6e-07 Score=82.80 Aligned_cols=87 Identities=21% Similarity=0.265 Sum_probs=74.5
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
..++++++..++.+ ++.|||+|.|||.++..|.+. +++|+++++++.|+....++.+.......+++..+|+.+
T Consensus 45 ~v~~~I~~ka~~k~-----tD~VLEvGPGTGnLT~~lLe~-~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK 118 (315)
T KOG0820|consen 45 LVIDQIVEKADLKP-----TDVVLEVGPGTGNLTVKLLEA-GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLK 118 (315)
T ss_pred HHHHHHHhccCCCC-----CCEEEEeCCCCCHHHHHHHHh-cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEeccccc
Confidence 36677777777766 999999999999999999998 899999999999999999999766555789999999988
Q ss_pred CCCCCCcccEEEecc
Q 016981 220 QPFPDGQFDLVWSME 234 (379)
Q Consensus 220 ~~~~~~~fD~V~~~~ 234 (379)
.++ ..||.++++.
T Consensus 119 ~d~--P~fd~cVsNl 131 (315)
T KOG0820|consen 119 TDL--PRFDGCVSNL 131 (315)
T ss_pred CCC--cccceeeccC
Confidence 764 3699998753
No 199
>PRK04148 hypothetical protein; Provisional
Probab=98.63 E-value=7.1e-07 Score=71.68 Aligned_cols=95 Identities=21% Similarity=0.274 Sum_probs=70.2
Q ss_pred CCEEEEeCCcccH-HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCC-CCcccEEEecccc
Q 016981 159 PKNVVDVGCGIGG-SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP-DGQFDLVWSMESG 236 (379)
Q Consensus 159 ~~~vLDiGcGtG~-~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~V~~~~~l 236 (379)
+.+|||||||+|. ++..|++. |..|+++|+++..++.++++ .+.++.+|+.+..+. -+.+|+|++...
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~-G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~~y~~a~liysirp- 86 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKES-GFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLEIYKNAKLIYSIRP- 86 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHC-CCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHHHHhcCCEEEEeCC-
Confidence 6899999999996 88888875 88999999999998888764 368899998876432 356899987532
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEeccCC
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHR 267 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 267 (379)
-++....+.++++. -|.-+++.....+
T Consensus 87 --p~el~~~~~~la~~--~~~~~~i~~l~~e 113 (134)
T PRK04148 87 --PRDLQPFILELAKK--INVPLIIKPLSGE 113 (134)
T ss_pred --CHHHHHHHHHHHHH--cCCCEEEEcCCCC
Confidence 23445666666663 3566777665443
No 200
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.63 E-value=2.1e-07 Score=88.33 Aligned_cols=104 Identities=28% Similarity=0.296 Sum_probs=84.7
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEccCCCC-C---CCCCcccEEEe
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLA-DKVSFQVGDALQQ-P---FPDGQFDLVWS 232 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~-~---~~~~~fD~V~~ 232 (379)
+++|||+=|=||.++.+.+.. |+ +|++||+|...++.|+++++-+|+. .++.|+++|+.+. . -...+||+|++
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred CCeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 899999999999999999986 55 9999999999999999999999985 4689999998764 1 22458999996
Q ss_pred cc-cc--------CCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 233 ME-SG--------EHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 233 ~~-~l--------~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
-= .+ .-..+...++..+.++|+|||.++++.
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s 336 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSS 336 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 31 11 111234678889999999999999987
No 201
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=1.2e-07 Score=75.57 Aligned_cols=78 Identities=19% Similarity=0.214 Sum_probs=65.9
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+++++|+|||.|-++....-.....|+|+|++|++++.+++++....+ ++++.++|+.++-+..+.||.++.+--+..
T Consensus 49 gkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdildle~~~g~fDtaviNppFGT 126 (185)
T KOG3420|consen 49 GKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILDLELKGGIFDTAVINPPFGT 126 (185)
T ss_pred CcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccchhccCCeEeeEEecCCCCc
Confidence 899999999999998554432256899999999999999999988776 679999999998777789999998876653
No 202
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.58 E-value=1.2e-07 Score=84.58 Aligned_cols=110 Identities=25% Similarity=0.333 Sum_probs=86.9
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCe-EEEEccCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKV-SFQVGDALQ 219 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i-~~~~~d~~~ 219 (379)
+..+++...+ .+..++|+|||.|.... ......++|.|++...+..+++. +. ....+|+..
T Consensus 35 ~v~qfl~~~~-------~gsv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~~~ak~~--------~~~~~~~ad~l~ 96 (293)
T KOG1331|consen 35 MVRQFLDSQP-------TGSVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLLGGAKRS--------GGDNVCRADALK 96 (293)
T ss_pred HHHHHHhccC-------CcceeeecccCCcccCc---CCCcceeeecchhhhhccccccC--------CCceeehhhhhc
Confidence 4455555443 37899999999986432 11245799999999988887752 33 678899999
Q ss_pred CCCCCCcccEEEeccccCCCCCH---HHHHHHHHHhcCCCCEEEEEeccCCC
Q 016981 220 QPFPDGQFDLVWSMESGEHMPDK---SKFVSELARVTAPAGTIIIVTWCHRD 268 (379)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~~~~---~~~l~~~~r~LkpgG~l~i~~~~~~~ 268 (379)
+|+.+.+||.+++..++||+... ..+++++.|+|+|||..++..|....
T Consensus 97 ~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~q 148 (293)
T KOG1331|consen 97 LPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWALEQ 148 (293)
T ss_pred CCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhhc
Confidence 99999999999999999999643 78999999999999999998876544
No 203
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.55 E-value=2.9e-07 Score=84.09 Aligned_cols=105 Identities=23% Similarity=0.250 Sum_probs=78.2
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEccCCCC-C--CCCCcccEEEecc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLA-DKVSFQVGDALQQ-P--FPDGQFDLVWSME 234 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~-~--~~~~~fD~V~~~~ 234 (379)
+++|||+=|=||.++...+.....+|+.||.|..+++.+++++..++++ .+++|+..|+.+. . -..++||+|++-=
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDP 203 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDP 203 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--
T ss_pred CCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEECC
Confidence 7899999999999999888753348999999999999999999999875 5799999998763 1 1246899999631
Q ss_pred c-c--CC---CCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 235 S-G--EH---MPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 235 ~-l--~~---~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
- + .. ..+...++..+.++|+|||.|+++.
T Consensus 204 PsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~s 238 (286)
T PF10672_consen 204 PSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCS 238 (286)
T ss_dssp SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 1 1 01 1234678889999999999988766
No 204
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.52 E-value=2.1e-06 Score=74.35 Aligned_cols=113 Identities=19% Similarity=0.298 Sum_probs=92.4
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcc
Q 016981 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216 (379)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d 216 (379)
..++.-+++..+ ++++||||.=||..+..+|... +++|+++|+++...+.+.+..+..|+..++++++++
T Consensus 62 g~fl~~li~~~~--------ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~ 133 (237)
T KOG1663|consen 62 GQFLQMLIRLLN--------AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGP 133 (237)
T ss_pred HHHHHHHHHHhC--------CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecc
Confidence 345566666654 8899999999999888888877 689999999999999999999999999999999998
Q ss_pred CCCC------CCCCCcccEEEeccccCCCC-CHHHHHHHHHHhcCCCCEEEEEe
Q 016981 217 ALQQ------PFPDGQFDLVWSMESGEHMP-DKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 217 ~~~~------~~~~~~fD~V~~~~~l~~~~-~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+.+. ....++||+++.- |.. +....+.++.+++|+||.|++-.
T Consensus 134 a~esLd~l~~~~~~~tfDfaFvD----adK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 134 ALESLDELLADGESGTFDFAFVD----ADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred hhhhHHHHHhcCCCCceeEEEEc----cchHHHHHHHHHHHhhcccccEEEEec
Confidence 7652 1346889999853 332 23578899999999999998865
No 205
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=1.1e-06 Score=85.23 Aligned_cols=119 Identities=25% Similarity=0.354 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE
Q 016981 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214 (379)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~ 214 (379)
......++...+++++... +.+|||+=||.|.++..++++ ..+|+|+|+++.+++.|+++++.+++. |+.|..
T Consensus 275 ~~~~ekl~~~a~~~~~~~~-----~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~-N~~f~~ 347 (432)
T COG2265 275 PAVAEKLYETALEWLELAG-----GERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGID-NVEFIA 347 (432)
T ss_pred HHHHHHHHHHHHHHHhhcC-----CCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEe
Confidence 4456677888888877654 789999999999999999987 679999999999999999999999984 699999
Q ss_pred ccCCCCCC---CCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 215 GDALQQPF---PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 215 ~d~~~~~~---~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+++++... ....+|.|+..=-=.- -...+++.+.+ ++|-..++++-
T Consensus 348 ~~ae~~~~~~~~~~~~d~VvvDPPR~G--~~~~~lk~l~~-~~p~~IvYVSC 396 (432)
T COG2265 348 GDAEEFTPAWWEGYKPDVVVVDPPRAG--ADREVLKQLAK-LKPKRIVYVSC 396 (432)
T ss_pred CCHHHHhhhccccCCCCEEEECCCCCC--CCHHHHHHHHh-cCCCcEEEEeC
Confidence 99988642 2357899985310000 01356666665 67888888865
No 206
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.52 E-value=1.8e-06 Score=79.13 Aligned_cols=119 Identities=22% Similarity=0.213 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 016981 138 QVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVG 215 (379)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~ 215 (379)
..+.+.++-..++.- .+.+|||+|||.|..+-.+.+.+ -.+++++|.|+.|++.++..+..............
T Consensus 18 ~~~vl~El~~r~p~f-----~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~ 92 (274)
T PF09243_consen 18 VYRVLSELRKRLPDF-----RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRV 92 (274)
T ss_pred HHHHHHHHHHhCcCC-----CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhh
Confidence 344555555443322 37899999999998766655544 35799999999999999987765421111111111
Q ss_pred cCCC-CCCCCCcccEEEeccccCCCCCH--HHHHHHHHHhcCCCCEEEEEecc
Q 016981 216 DALQ-QPFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 216 d~~~-~~~~~~~fD~V~~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
...+ .++ ...|+|++.++|..+++. ..+++.+.+.+.+ .|+|++..
T Consensus 93 ~~~~~~~~--~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpG 141 (274)
T PF09243_consen 93 LYRDFLPF--PPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPG 141 (274)
T ss_pred hhcccccC--CCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCC
Confidence 1111 122 234999999999998762 4566667666655 88888854
No 207
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.51 E-value=3.2e-07 Score=78.80 Aligned_cols=105 Identities=18% Similarity=0.124 Sum_probs=78.6
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-C---CCCCcccEEEecc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P---FPDGQFDLVWSME 234 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~---~~~~~fD~V~~~~ 234 (379)
+.+|||+-||||.++...+.+...+|+.||.++..+...+++++..+...++.++..|+... . ....+||+|++-=
T Consensus 43 g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP 122 (183)
T PF03602_consen 43 GARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP 122 (183)
T ss_dssp T-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--
T ss_pred CCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC
Confidence 89999999999999999998865799999999999999999999988876789999886542 1 2468899998752
Q ss_pred ccCCCCC-HHHHHHHHH--HhcCCCCEEEEEec
Q 016981 235 SGEHMPD-KSKFVSELA--RVTAPAGTIIIVTW 264 (379)
Q Consensus 235 ~l~~~~~-~~~~l~~~~--r~LkpgG~l~i~~~ 264 (379)
-+.... ...++..+. .+|+++|.+++-..
T Consensus 123 -PY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 123 -PYAKGLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp -STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred -CcccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 222233 367788777 78999998887653
No 208
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=9.2e-07 Score=79.14 Aligned_cols=90 Identities=24% Similarity=0.303 Sum_probs=74.0
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 220 (379)
.++++++.+...+ +..|||||+|.|.++..|+++ +.+|+++++++.+++..++++. ...|++++.+|+.+.
T Consensus 18 v~~kIv~~a~~~~-----~d~VlEIGpG~GaLT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~ 88 (259)
T COG0030 18 VIDKIVEAANISP-----GDNVLEIGPGLGALTEPLLER-AARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKF 88 (259)
T ss_pred HHHHHHHhcCCCC-----CCeEEEECCCCCHHHHHHHhh-cCeEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcC
Confidence 5778888777665 899999999999999999998 6799999999999999998875 236899999999998
Q ss_pred CCCCC-cccEEEeccccCCCC
Q 016981 221 PFPDG-QFDLVWSMESGEHMP 240 (379)
Q Consensus 221 ~~~~~-~fD~V~~~~~l~~~~ 240 (379)
+++.- .++.|+++-- +++.
T Consensus 89 d~~~l~~~~~vVaNlP-Y~Is 108 (259)
T COG0030 89 DFPSLAQPYKVVANLP-YNIS 108 (259)
T ss_pred cchhhcCCCEEEEcCC-Cccc
Confidence 87543 6788887643 4443
No 209
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.49 E-value=4.1e-07 Score=83.50 Aligned_cols=88 Identities=17% Similarity=0.220 Sum_probs=72.4
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 218 (379)
+++++++.+...+ +..+||.+||.|..+..+++.++ ++|+|+|.++.+++.|++++.. .+++.++++|+.
T Consensus 7 ll~Evl~~L~~~p-----g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~ 78 (296)
T PRK00050 7 LLDEVVDALAIKP-----DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFS 78 (296)
T ss_pred cHHHHHHhhCCCC-----CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHH
Confidence 6778888877554 78999999999999999999873 7999999999999999998755 358999999988
Q ss_pred CCC--CCCC--cccEEEecccc
Q 016981 219 QQP--FPDG--QFDLVWSMESG 236 (379)
Q Consensus 219 ~~~--~~~~--~fD~V~~~~~l 236 (379)
++. .+.+ ++|.|++....
T Consensus 79 ~l~~~l~~~~~~vDgIl~DLGv 100 (296)
T PRK00050 79 NLKEVLAEGLGKVDGILLDLGV 100 (296)
T ss_pred HHHHHHHcCCCccCEEEECCCc
Confidence 753 2222 79999987554
No 210
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.49 E-value=2.6e-06 Score=70.62 Aligned_cols=104 Identities=37% Similarity=0.491 Sum_probs=76.0
Q ss_pred EEEeCCcccHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC--CCCCC-CcccEEEecccc
Q 016981 162 VVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ--QPFPD-GQFDLVWSMESG 236 (379)
Q Consensus 162 vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~-~~fD~V~~~~~l 236 (379)
++|+|||+|... .+..... ..++|+|+++.++..++..... .....+.+...|... .++.. ..||++ .....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLV 128 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEE-eeeee
Confidence 999999999977 4444322 4899999999999985554432 211116788888776 67766 489999 55544
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEeccCCC
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRD 268 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~ 268 (379)
.+..+....+.++.+.|+|+|.+++.......
T Consensus 129 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 129 LHLLPPAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred hhcCCHHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 44434889999999999999999998865443
No 211
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.49 E-value=1.6e-06 Score=77.59 Aligned_cols=147 Identities=17% Similarity=0.202 Sum_probs=85.9
Q ss_pred CCEEEEeCCcc--cHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----------CC
Q 016981 159 PKNVVDVGCGI--GGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----------FP 223 (379)
Q Consensus 159 ~~~vLDiGcGt--G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~ 223 (379)
-...||||||- -.....+++.. .++|+-+|.+|..+..++..+....- ....++.+|+.+.. +.
T Consensus 69 IrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 69 IRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp --EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred cceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 46799999994 33566677665 68999999999999999998865421 13889999997631 11
Q ss_pred CCcccEEEeccccCCCCC---HHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHH
Q 016981 224 DGQFDLVWSMESGEHMPD---KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTA 300 (379)
Q Consensus 224 ~~~fD~V~~~~~l~~~~~---~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (379)
-...=.|++..+++|++| +..+++.+...|.||.+|+|+..+.+.. +. ........+...... ..+.+.+
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~-p~---~~~~~~~~~~~~~~~---~~~Rs~~ 220 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGA-PE---RAEALEAVYAQAGSP---GRPRSRE 220 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTS-HH---HHHHHHHHHHHCCS-------B-HH
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCC-HH---HHHHHHHHHHcCCCC---ceecCHH
Confidence 122335777889999964 6899999999999999999998765421 10 011112222222111 1355899
Q ss_pred HHHHHHHhCCCceeE
Q 016981 301 DYVKLLQSLSLEDIK 315 (379)
Q Consensus 301 ~~~~~l~~aGF~~v~ 315 (379)
++..+|. ||+.++
T Consensus 221 ei~~~f~--g~elve 233 (267)
T PF04672_consen 221 EIAAFFD--GLELVE 233 (267)
T ss_dssp HHHHCCT--TSEE-T
T ss_pred HHHHHcC--CCccCC
Confidence 9999885 888653
No 212
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.46 E-value=1.4e-06 Score=81.15 Aligned_cols=106 Identities=20% Similarity=0.172 Sum_probs=91.5
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
|.+|||.=+|.|.+++.+|+....+|+++|++|.+++..+++++.+++...+..+++|....+..-+.+|.|++...
T Consensus 189 GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p--- 265 (341)
T COG2520 189 GETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP--- 265 (341)
T ss_pred CCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC---
Confidence 89999999999999999999754459999999999999999999999977799999999988654488999997643
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEEEeccCCC
Q 016981 239 MPDKSKFVSELARVTAPAGTIIIVTWCHRD 268 (379)
Q Consensus 239 ~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~ 268 (379)
.+...++..+.+.+++||.+-+.++...+
T Consensus 266 -~~a~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 266 -KSAHEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred -CcchhhHHHHHHHhhcCcEEEEEeccchh
Confidence 44577899999999999999998876543
No 213
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.45 E-value=2e-06 Score=78.47 Aligned_cols=103 Identities=17% Similarity=0.266 Sum_probs=82.6
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC--C-CCCeEEEEccCCCC-CCCCCcccEEEec
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG--L-ADKVSFQVGDALQQ-PFPDGQFDLVWSM 233 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~-~~~~~~fD~V~~~ 233 (379)
+++||-||.|.|.+++.+.+.. -.+++.+|+++..++.+++.+.... . .++++++..|..+. .-...+||+|++-
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D 156 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVD 156 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEc
Confidence 3699999999999999999976 4799999999999999999886532 2 37899999998764 2123489999975
Q ss_pred cccCCC---C--CHHHHHHHHHHhcCCCCEEEEE
Q 016981 234 ESGEHM---P--DKSKFVSELARVTAPAGTIIIV 262 (379)
Q Consensus 234 ~~l~~~---~--~~~~~l~~~~r~LkpgG~l~i~ 262 (379)
..=. . + ....+++.+++.|+++|.++..
T Consensus 157 ~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 157 STDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 4433 2 1 1278999999999999999887
No 214
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.43 E-value=6.1e-07 Score=80.89 Aligned_cols=105 Identities=20% Similarity=0.288 Sum_probs=79.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCC---CCCeEEEEccCCCC-CCCCC-cccEEEe
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGL---ADKVSFQVGDALQQ-PFPDG-QFDLVWS 232 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~---~~~i~~~~~d~~~~-~~~~~-~fD~V~~ 232 (379)
+.+||=||.|.|..+..+.+.. ..+++.+|+++..++.|++.+..... .++++++.+|.... .-..+ +||+|+.
T Consensus 77 p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~ 156 (246)
T PF01564_consen 77 PKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVIIV 156 (246)
T ss_dssp T-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEEE
T ss_pred cCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEEE
Confidence 8899999999999999998765 46999999999999999998765321 36899999998653 11233 8999997
Q ss_pred ccccCCCCC----HHHHHHHHHHhcCCCCEEEEEe
Q 016981 233 MESGEHMPD----KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 233 ~~~l~~~~~----~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
-..-...+. ...+++.+.+.|+|||.+++..
T Consensus 157 D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 157 DLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp ESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 443321111 2689999999999999998865
No 215
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.40 E-value=1.4e-07 Score=79.69 Aligned_cols=95 Identities=21% Similarity=0.310 Sum_probs=73.7
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
.+.++||+|.|.|..+..++..+ .+|+++++|..|....+++ +.++. ...+..-.+-+||+|.|.+++.
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~f-eevyATElS~tMr~rL~kk--------~ynVl--~~~ew~~t~~k~dli~clNlLD 180 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTF-EEVYATELSWTMRDRLKKK--------NYNVL--TEIEWLQTDVKLDLILCLNLLD 180 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchH-HHHHHHHhhHHHHHHHhhc--------CCcee--eehhhhhcCceeehHHHHHHHH
Confidence 36899999999999999998875 4799999999998876653 22221 1112111245699999999998
Q ss_pred CCCCHHHHHHHHHHhcCC-CCEEEEEe
Q 016981 238 HMPDKSKFVSELARVTAP-AGTIIIVT 263 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~Lkp-gG~l~i~~ 263 (379)
--.++-.+|+.++.+|+| +|+++++-
T Consensus 181 Rc~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 181 RCFDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred hhcChHHHHHHHHHHhccCCCcEEEEE
Confidence 878999999999999999 89888764
No 216
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.38 E-value=4.4e-06 Score=72.89 Aligned_cols=123 Identities=20% Similarity=0.272 Sum_probs=88.0
Q ss_pred EEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC-CCCCCCcccEEEeccccCCC
Q 016981 162 VVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-QPFPDGQFDLVWSMESGEHM 239 (379)
Q Consensus 162 vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~fD~V~~~~~l~~~ 239 (379)
|.||||--|.+...|.++. ..+++++|+++.-++.|+++++..++.+++++..+|... ++ +.+..|.|+..++=...
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~-~~e~~d~ivIAGMGG~l 79 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLK-PGEDVDTIVIAGMGGEL 79 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---GGG---EEEEEEE-HHH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccC-CCCCCCEEEEecCCHHH
Confidence 6899999999999999985 347999999999999999999999998999999999654 33 22337888877654322
Q ss_pred CCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEEec
Q 016981 240 PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDW 319 (379)
Q Consensus 240 ~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 319 (379)
...+|.+....++....|++.-. .....++++|.+.||..++..-.
T Consensus 80 --I~~ILe~~~~~~~~~~~lILqP~--------------------------------~~~~~LR~~L~~~gf~I~~E~lv 125 (205)
T PF04816_consen 80 --IIEILEAGPEKLSSAKRLILQPN--------------------------------THAYELRRWLYENGFEIIDEDLV 125 (205)
T ss_dssp --HHHHHHHTGGGGTT--EEEEEES--------------------------------S-HHHHHHHHHHTTEEEEEEEEE
T ss_pred --HHHHHHhhHHHhccCCeEEEeCC--------------------------------CChHHHHHHHHHCCCEEEEeEEE
Confidence 25667766667766667777541 14678999999999998886543
No 217
>PRK00536 speE spermidine synthase; Provisional
Probab=98.37 E-value=4.5e-06 Score=75.32 Aligned_cols=96 Identities=14% Similarity=0.052 Sum_probs=75.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc---CCCCCeEEEEccCCCCCCCCCcccEEEeccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR---GLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (379)
+++||=+|.|-|..++.+.+. ..+|+-+|+++.+++.+++.+... --.++++++.. +.+ ...++||+|++-..
T Consensus 73 pk~VLIiGGGDGg~~REvLkh-~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIvDs~ 148 (262)
T PRK00536 73 LKEVLIVDGFDLELAHQLFKY-DTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIICLQE 148 (262)
T ss_pred CCeEEEEcCCchHHHHHHHCc-CCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEEcCC
Confidence 789999999999999999986 569999999999999999965432 11357777652 211 12368999997643
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 236 GEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
....+++.+++.|+|||.++...
T Consensus 149 -----~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 149 -----PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred -----CChHHHHHHHHhcCCCcEEEECC
Confidence 33788899999999999998864
No 218
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.37 E-value=6.8e-06 Score=71.68 Aligned_cols=132 Identities=17% Similarity=0.090 Sum_probs=101.5
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCc-ccEEEecccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQ-FDLVWSMESG 236 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~-fD~V~~~~~l 236 (379)
+.+++|||+|.|.-++.++-.+ ..+|+-+|....-+.+.+....+.++ +|++++++.+++..-. .. ||+|+++.+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L-~nv~i~~~RaE~~~~~-~~~~D~vtsRAv- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL-ENVEIVHGRAEEFGQE-KKQYDVVTSRAV- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC-CCeEEehhhHhhcccc-cccCcEEEeehc-
Confidence 5899999999999999988555 66799999999999999999988888 5899999999987521 22 999998754
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEE
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 316 (379)
.+...++.-+...+|+||.+++.-+. .... -..+.++.....||.++.+
T Consensus 145 ---a~L~~l~e~~~pllk~~g~~~~~k~~----------------~~~~------------e~~e~~~a~~~~~~~~~~~ 193 (215)
T COG0357 145 ---ASLNVLLELCLPLLKVGGGFLAYKGL----------------AGKD------------ELPEAEKAILPLGGQVEKV 193 (215)
T ss_pred ---cchHHHHHHHHHhcccCCcchhhhHH----------------hhhh------------hHHHHHHHHHhhcCcEEEE
Confidence 34467788888999999987653211 0000 1345667788889999888
Q ss_pred EecCCCcc
Q 016981 317 EDWSQNVA 324 (379)
Q Consensus 317 ~~~~~~~~ 324 (379)
..+..+..
T Consensus 194 ~~~~~p~~ 201 (215)
T COG0357 194 FSLTVPEL 201 (215)
T ss_pred EEeecCCC
Confidence 87776654
No 219
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.37 E-value=5.1e-06 Score=79.17 Aligned_cols=100 Identities=12% Similarity=0.142 Sum_probs=82.6
Q ss_pred CCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-CCCCcccEEEeccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDLVWSMES 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~V~~~~~ 235 (379)
+.+|||+.||+|..++.++.+. ..+|+++|+++.+++.++++++.+++ .++.+...|+...- .....||+|...-
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~-~~~~v~~~Da~~~l~~~~~~fDvIdlDP- 122 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV-ENIEVPNEDAANVLRYRNRKFHVIDIDP- 122 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEchhHHHHHHHhCCCCCEEEeCC-
Confidence 4689999999999999999874 35899999999999999999998876 36889999987652 2235799998643
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 236 GEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+ ..+..++..+.+.+++||.|.++-
T Consensus 123 f---Gs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 123 F---GTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred C---CCcHHHHHHHHHhcccCCEEEEEe
Confidence 2 345689999999999999999983
No 220
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.37 E-value=7.9e-07 Score=74.13 Aligned_cols=72 Identities=28% Similarity=0.503 Sum_probs=55.8
Q ss_pred EEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--CCCCc-ccEEEec
Q 016981 161 NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQ-FDLVWSM 233 (379)
Q Consensus 161 ~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~-fD~V~~~ 233 (379)
.|+|+.||.|..++.+|+. ..+|+++|+++..++.|+.+++..|+.+++.|+++|+.+.. +.... ||+|++.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 6999999999999999998 56999999999999999999999999889999999987752 22222 7999864
No 221
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.36 E-value=7.1e-06 Score=74.35 Aligned_cols=168 Identities=19% Similarity=0.301 Sum_probs=90.6
Q ss_pred hhHHHHHHHHHHHHccCchhHHHhhhccccccccCCCCCCC--cchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCC
Q 016981 90 AAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVS--VSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGC 167 (379)
Q Consensus 90 ~~~~~~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGc 167 (379)
....++...+.+.+.......+..|.+.+... +.+ +.. .-++.....++...-+..+.... ...+.+|+=|||
T Consensus 55 ~~i~~~~~~L~~~~~~ae~~LE~~~A~~l~~~--~~p-~~~L~~FpYy~nY~~L~~lE~~~l~~~~--~~~p~rVaFIGS 129 (276)
T PF03059_consen 55 PEIQSIRPSLRRLCSEAEGLLESHWAKRLLAS--DNP-LDHLESFPYYPNYEKLVRLEYAALRIHA--GDPPSRVAFIGS 129 (276)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SSH-HHHHHTSTTHHHHHHHHHHHHH-HTT----TT---EEEEE--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCH-HHHHhcCCcHHHHHHHHHHHHHHHhhcC--CcccceEEEEcC
Confidence 55566666666666655544444444321110 000 000 00022223334443333333322 113569999999
Q ss_pred ccc-HHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHH-HcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC-CCCH
Q 016981 168 GIG-GSSRYLAKKF--GAKCQGITLSPVQAQRANALAA-ARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH-MPDK 242 (379)
Q Consensus 168 GtG-~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~-~~~~ 242 (379)
|.= ..++.+++++ +..|+++|+++.+.+.+++..+ ..++..++.|..+|..+.+..-..||+|+....... -.+.
T Consensus 130 GPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAalVg~~~e~K 209 (276)
T PF03059_consen 130 GPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAALVGMDAEPK 209 (276)
T ss_dssp -SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT-S----SH
T ss_pred CCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhhhcccccchH
Confidence 964 4466666654 5689999999999999999887 456667899999999877654468999987665542 2477
Q ss_pred HHHHHHHHHhcCCCCEEEEE
Q 016981 243 SKFVSELARVTAPAGTIIIV 262 (379)
Q Consensus 243 ~~~l~~~~r~LkpgG~l~i~ 262 (379)
.+++.++.+.++||+.+++-
T Consensus 210 ~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 210 EEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp HHHHHHHHHHS-TTSEEEEE
T ss_pred HHHHHHHHhhCCCCcEEEEe
Confidence 99999999999999988875
No 222
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.35 E-value=2e-06 Score=75.06 Aligned_cols=116 Identities=25% Similarity=0.320 Sum_probs=71.9
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHH-------HcCC-CCCe
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAA-------ARGL-ADKV 210 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~-------~~~~-~~~i 210 (379)
..+..+++.+++.+ +...+|||||.|......+-..++ +++||++.+...+.|+...+ ..|. ..++
T Consensus 29 ~~~~~il~~~~l~~-----~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v 103 (205)
T PF08123_consen 29 EFVSKILDELNLTP-----DDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKV 103 (205)
T ss_dssp HHHHHHHHHTT--T-----T-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EE
T ss_pred HHHHHHHHHhCCCC-----CCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 45666777777665 899999999999998888776655 59999999998887765432 2232 2467
Q ss_pred EEEEccCCCCCCCC---CcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEE
Q 016981 211 SFQVGDALQQPFPD---GQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIII 261 (379)
Q Consensus 211 ~~~~~d~~~~~~~~---~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i 261 (379)
.+..+|+.+.++.. ...|+|++++.... ++....|.+....||+|.+++-
T Consensus 104 ~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F~-~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 104 ELIHGDFLDPDFVKDIWSDADVVFVNNTCFD-PDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp EEECS-TTTHHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEE
T ss_pred eeeccCccccHhHhhhhcCCCEEEEeccccC-HHHHHHHHHHHhcCCCCCEEEE
Confidence 88888887643211 34699999876432 3446667888888999988764
No 223
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.33 E-value=7.6e-06 Score=84.80 Aligned_cols=119 Identities=22% Similarity=0.207 Sum_probs=85.6
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc----------------------------------------
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF---------------------------------------- 180 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~---------------------------------------- 180 (379)
+...++...+... ++..++|..||+|.+.+..+...
T Consensus 177 lAaa~l~~a~w~~----~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~ 252 (702)
T PRK11783 177 LAAAILLRSGWPQ----EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGL 252 (702)
T ss_pred HHHHHHHHcCCCC----CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 4445555555421 37899999999999988876521
Q ss_pred ---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCC--CCcccEEEeccccCC-CC---CHHHHHHHHHH
Q 016981 181 ---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP--DGQFDLVWSMESGEH-MP---DKSKFVSELAR 251 (379)
Q Consensus 181 ---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~fD~V~~~~~l~~-~~---~~~~~l~~~~r 251 (379)
..+++|+|+++.+++.|++++...|+.+.+.|.++|+.+++.+ .++||+|+++=-... +. +...+.+++.+
T Consensus 253 ~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~ 332 (702)
T PRK11783 253 AELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGR 332 (702)
T ss_pred cccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHH
Confidence 1269999999999999999999999987899999999887543 357999999854422 22 22344444444
Q ss_pred hc---CCCCEEEEEe
Q 016981 252 VT---APAGTIIIVT 263 (379)
Q Consensus 252 ~L---kpgG~l~i~~ 263 (379)
.| .+|+.+++..
T Consensus 333 ~lk~~~~g~~~~llt 347 (702)
T PRK11783 333 RLKQQFGGWNAALFS 347 (702)
T ss_pred HHHHhCCCCeEEEEe
Confidence 44 4898887765
No 224
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.30 E-value=7.2e-06 Score=69.56 Aligned_cols=106 Identities=18% Similarity=0.105 Sum_probs=81.9
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-CCCCC--cccEEEecc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDG--QFDLVWSME 234 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~--~fD~V~~~~ 234 (379)
.+.++||+=+|+|.++...+.+....++.||.+.......+++++..+...+..++..|+... +-... +||+|+.-=
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDP 122 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDP 122 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCC
Confidence 389999999999999999999976799999999999999999999988777899999998743 11222 499999754
Q ss_pred ccC-CCCCHHHHHHH--HHHhcCCCCEEEEEe
Q 016981 235 SGE-HMPDKSKFVSE--LARVTAPAGTIIIVT 263 (379)
Q Consensus 235 ~l~-~~~~~~~~l~~--~~r~LkpgG~l~i~~ 263 (379)
-+. -+-+....+.. -..+|+|+|.+++-.
T Consensus 123 Py~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 123 PYAKGLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred CCccchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 443 11122333333 457799999998865
No 225
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.30 E-value=3.9e-06 Score=79.82 Aligned_cols=78 Identities=31% Similarity=0.453 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE
Q 016981 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214 (379)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~ 214 (379)
......+++..++.++... + +|||+-||+|.++..+++. ..+|+|||+++.+++.|++++..+++ .|++|..
T Consensus 179 ~~~~~~l~~~~~~~l~~~~-----~-~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i-~n~~f~~ 250 (352)
T PF05958_consen 179 PEQNEKLYEQALEWLDLSK-----G-DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGI-DNVEFIR 250 (352)
T ss_dssp HHHHHHHHHHHHHHCTT-T-----T-EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE
T ss_pred HHHHHHHHHHHHHHhhcCC-----C-cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCC-CcceEEE
Confidence 3456678888888887543 4 8999999999999999997 57999999999999999999999998 6899998
Q ss_pred ccCCCC
Q 016981 215 GDALQQ 220 (379)
Q Consensus 215 ~d~~~~ 220 (379)
+++++.
T Consensus 251 ~~~~~~ 256 (352)
T PF05958_consen 251 GDAEDF 256 (352)
T ss_dssp --SHHC
T ss_pred eeccch
Confidence 877553
No 226
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.27 E-value=4.2e-06 Score=70.52 Aligned_cols=103 Identities=23% Similarity=0.290 Sum_probs=81.1
Q ss_pred CCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecc
Q 016981 155 PTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (379)
Q Consensus 155 ~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~ 234 (379)
..-.+++|||+|+|+|..++..++.....|+..|+.|......+-+.+.+|+ ++.+...|... .+..||+|++..
T Consensus 76 etVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~g---~~~~~Dl~LagD 150 (218)
T COG3897 76 ETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV--SILFTHADLIG---SPPAFDLLLAGD 150 (218)
T ss_pred cccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc--eeEEeeccccC---CCcceeEEEeec
Confidence 3456999999999999999999887666899999999999999999888886 67888777655 357799999999
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCCE-EEEEe
Q 016981 235 SGEHMPDKSKFVSELARVTAPAGT-IIIVT 263 (379)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~-l~i~~ 263 (379)
+++.-+.-.+++. +.+.|+..|. +++.+
T Consensus 151 lfy~~~~a~~l~~-~~~~l~~~g~~vlvgd 179 (218)
T COG3897 151 LFYNHTEADRLIP-WKDRLAEAGAAVLVGD 179 (218)
T ss_pred eecCchHHHHHHH-HHHHHHhCCCEEEEeC
Confidence 9877555567777 5555665555 44444
No 227
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=9.8e-06 Score=69.78 Aligned_cols=111 Identities=23% Similarity=0.249 Sum_probs=77.6
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcc
Q 016981 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216 (379)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d 216 (379)
...+.++.+...+- .++.+|+|+|+-.|.|+..+++..+ ..|+|+|+.|-- ..+++.++++|
T Consensus 30 a~KL~el~~k~~i~----~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~------------~~~~V~~iq~d 93 (205)
T COG0293 30 AYKLLELNEKFKLF----KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK------------PIPGVIFLQGD 93 (205)
T ss_pred HHHHHHHHHhcCee----cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc------------cCCCceEEeee
Confidence 34455555554433 2589999999999999999999874 359999998732 22579999999
Q ss_pred CCCCC--------CCCCcccEEEecccc---CCC-CCH-------HHHHHHHHHhcCCCCEEEEEecc
Q 016981 217 ALQQP--------FPDGQFDLVWSMESG---EHM-PDK-------SKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 217 ~~~~~--------~~~~~fD~V~~~~~l---~~~-~~~-------~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
++..+ +....+|+|++-..- .+. .|- ..++.-+..+|+|||.+++-.+-
T Consensus 94 ~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq 161 (205)
T COG0293 94 ITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ 161 (205)
T ss_pred ccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence 98743 334557999854322 111 121 34566677899999999998754
No 228
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.22 E-value=6.2e-07 Score=72.93 Aligned_cols=136 Identities=9% Similarity=0.117 Sum_probs=92.3
Q ss_pred CCEEEEeCCcc-cHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCC--CCeEEEEccCCCC--CCCCCcccEEEe
Q 016981 159 PKNVVDVGCGI-GGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLA--DKVSFQVGDALQQ--PFPDGQFDLVWS 232 (379)
Q Consensus 159 ~~~vLDiGcGt-G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~--~~i~~~~~d~~~~--~~~~~~fD~V~~ 232 (379)
+.+|||+|.|- |.-+..+|... ...|..+|-+...++..++....+... ..+.....+.... ......||.|++
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 78999999995 44445555544 568999999999998887765433111 1121222222111 122458999999
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCc
Q 016981 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLE 312 (379)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~ 312 (379)
...+..-.....+++.|.++|+|.|..++..+-. -.+.+.+.+.....||.
T Consensus 110 ADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRR-----------------------------g~sL~kF~de~~~~gf~ 160 (201)
T KOG3201|consen 110 ADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRR-----------------------------GQSLQKFLDEVGTVGFT 160 (201)
T ss_pred ccchhHHHHHHHHHHHHHHHhCcccceeEecCcc-----------------------------cchHHHHHHHHHhceeE
Confidence 9888665555788999999999999976654211 12567778888899999
Q ss_pred eeEEEecCCCc
Q 016981 313 DIKAEDWSQNV 323 (379)
Q Consensus 313 ~v~~~~~~~~~ 323 (379)
+.-.++|...+
T Consensus 161 v~l~enyde~i 171 (201)
T KOG3201|consen 161 VCLEENYDEAI 171 (201)
T ss_pred EEecccHhHHH
Confidence 98887776655
No 229
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.19 E-value=1.2e-05 Score=75.32 Aligned_cols=105 Identities=19% Similarity=0.294 Sum_probs=72.7
Q ss_pred CCEEEEeCCcccHHHHHHHHH--------cCCEEEEEeCCHHHHHHHHHHHHHcCCCC-CeEEEEccCCCCCCC--CCcc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKK--------FGAKCQGITLSPVQAQRANALAAARGLAD-KVSFQVGDALQQPFP--DGQF 227 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~--------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~~~--~~~f 227 (379)
+.+|+|.+||+|.+...+.+. ....++|+|+++.++..|+-++.-.+... +..+...|....+.. ...|
T Consensus 47 ~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 126 (311)
T PF02384_consen 47 GDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQKF 126 (311)
T ss_dssp TEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST--E
T ss_pred cceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccccccc
Confidence 778999999999998888763 25689999999999999988776555432 245778887655322 4789
Q ss_pred cEEEeccccCCC--C------------------C-HHHHHHHHHHhcCCCCEEEEEe
Q 016981 228 DLVWSMESGEHM--P------------------D-KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 228 D~V~~~~~l~~~--~------------------~-~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
|+|+++--+... . . ...++..+.+.|++||++++..
T Consensus 127 D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il 183 (311)
T PF02384_consen 127 DVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL 183 (311)
T ss_dssp EEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence 999986444322 0 0 1357889999999999987766
No 230
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=98.16 E-value=0.00023 Score=67.67 Aligned_cols=103 Identities=17% Similarity=0.248 Sum_probs=62.8
Q ss_pred CCCCCCCCcccEEEeccccCCCCC--------------------------------------HHHHHHHHHHhcCCCCEE
Q 016981 218 LQQPFPDGQFDLVWSMESGEHMPD--------------------------------------KSKFVSELARVTAPAGTI 259 (379)
Q Consensus 218 ~~~~~~~~~fD~V~~~~~l~~~~~--------------------------------------~~~~l~~~~r~LkpgG~l 259 (379)
..--||.++.+++++...+|++.. ...+|+.=++-|.|||++
T Consensus 154 Y~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~m 233 (386)
T PLN02668 154 YRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAM 233 (386)
T ss_pred cccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEE
Confidence 333478999999999999998852 112333344569999999
Q ss_pred EEEeccCCCCCCCccc-cc-hH---HHHHHHH----------HhhccCCC-CCCCHHHHHHHHHhCC-CceeEEEecC
Q 016981 260 IIVTWCHRDLAPSEES-LQ-PW---EQELLKK----------ICDAYYLP-AWCSTADYVKLLQSLS-LEDIKAEDWS 320 (379)
Q Consensus 260 ~i~~~~~~~~~~~~~~-~~-~~---~~~~~~~----------~~~~~~~~-~~~~~~~~~~~l~~aG-F~~v~~~~~~ 320 (379)
+++....+...+.... .. .| ....+.. -...+.+| +..+.+|+++.+++.| |++..++.+.
T Consensus 234 vl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~I~~le~~~ 311 (386)
T PLN02668 234 FLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFAIDKLEVFK 311 (386)
T ss_pred EEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEEeeeeEEee
Confidence 9988766543222221 11 11 1111111 12334444 3469999999999988 7666665544
No 231
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=98.16 E-value=0.00013 Score=65.92 Aligned_cols=175 Identities=16% Similarity=0.159 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH---HcC------
Q 016981 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAA---ARG------ 205 (379)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~---~~~------ 205 (379)
......+++++-...+... ......+||--|||.|+++..|+.. |..+-|-+.|--|+-...-.+. ..+
T Consensus 128 d~~ykpii~~l~~lfp~~~-~~r~ki~iLvPGaGlGRLa~dla~~-G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYP 205 (369)
T KOG2798|consen 128 DQLYKPIIEELNSLFPSRG-KERTKIRILVPGAGLGRLAYDLACL-GFKCQGNEFSYFMLICSSFILNYCKQENQFTIYP 205 (369)
T ss_pred hhhhhhHHHHHHhhCCCcc-ccccCceEEecCCCchhHHHHHHHh-cccccccHHHHHHHHHHHHHHHhhccCCcEEEEe
Confidence 3344456666655544322 2334678999999999999999987 6778888888877654332221 100
Q ss_pred -------------------CC-----------CCeEEEEccCCCC---CCCCCcccEEEeccccCCCCCHHHHHHHHHHh
Q 016981 206 -------------------LA-----------DKVSFQVGDALQQ---PFPDGQFDLVWSMESGEHMPDKSKFVSELARV 252 (379)
Q Consensus 206 -------------------~~-----------~~i~~~~~d~~~~---~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~ 252 (379)
.| .......+|+.+. +-..+.||+|+..+.+....+.-..++.|..+
T Consensus 206 fIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~i 285 (369)
T KOG2798|consen 206 FIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKI 285 (369)
T ss_pred eeeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHh
Confidence 00 0111122333322 11234799999998888878889999999999
Q ss_pred cCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEEecCCCccc
Q 016981 253 TAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAP 325 (379)
Q Consensus 253 LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~~ 325 (379)
|||||..+-.....-...+....- ....+ -++.+++..+.+..||+++..+.+......
T Consensus 286 Lk~GGvWiNlGPLlYHF~d~~g~~------------~~~si--Els~edl~~v~~~~GF~~~ke~~Idt~Y~~ 344 (369)
T KOG2798|consen 286 LKPGGVWINLGPLLYHFEDTHGVE------------NEMSI--ELSLEDLKRVASHRGFEVEKERGIDTTYGT 344 (369)
T ss_pred ccCCcEEEeccceeeeccCCCCCc------------ccccc--cccHHHHHHHHHhcCcEEEEeeeeecccCC
Confidence 999999877653322111111100 00001 137899999999999999988755554444
No 232
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=4.4e-05 Score=72.64 Aligned_cols=106 Identities=22% Similarity=0.333 Sum_probs=83.0
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--CC-CCcccEEE
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FP-DGQFDLVW 231 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~-~~~fD~V~ 231 (379)
++.+|||+.++.|.=+.+++... +..|+++|.++.-++..++++++.|+. |+.....|....+ .+ .++||.|+
T Consensus 156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-nv~~~~~d~~~~~~~~~~~~~fD~iL 234 (355)
T COG0144 156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-NVIVVNKDARRLAELLPGGEKFDRIL 234 (355)
T ss_pred CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-ceEEEecccccccccccccCcCcEEE
Confidence 48999999999999999998876 356799999999999999999999984 6788888876543 22 23599998
Q ss_pred e------ccccCCCCC----------------HHHHHHHHHHhcCCCCEEEEEec
Q 016981 232 S------MESGEHMPD----------------KSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 232 ~------~~~l~~~~~----------------~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+ .+++.-=++ ..++|..+.++|||||.|+.++-
T Consensus 235 lDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTC 289 (355)
T COG0144 235 LDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTC 289 (355)
T ss_pred ECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence 4 233321122 14688899999999999999874
No 233
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.12 E-value=5.8e-05 Score=62.07 Aligned_cols=99 Identities=24% Similarity=0.350 Sum_probs=71.0
Q ss_pred CCCEEEEeCCcccHHHHHHHH-----HcCCEEEEEeCCHHHHHHHHHHHHHcC--CCCCeEEEEccCCCCCCCCCcccEE
Q 016981 158 RPKNVVDVGCGIGGSSRYLAK-----KFGAKCQGITLSPVQAQRANALAAARG--LADKVSFQVGDALQQPFPDGQFDLV 230 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~-----~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~fD~V 230 (379)
+..+|+|+|||.|.++..++. ..+.+|+|+|.++..++.++++.+..+ +..++.+..++...... ....+++
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 103 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPDIL 103 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCeEE
Confidence 478999999999999999998 557899999999999999999988776 44567777666554422 4566777
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCCEEEEE
Q 016981 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (379)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~ 262 (379)
+..+.=..+. ..+++.+.+ |+-..++.
T Consensus 104 vgLHaCG~Ls--~~~l~~~~~---~~~~~l~~ 130 (141)
T PF13679_consen 104 VGLHACGDLS--DRALRLFIR---PNARFLVL 130 (141)
T ss_pred EEeecccchH--HHHHHHHHH---cCCCEEEE
Confidence 7654443332 445555555 66555543
No 234
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.11 E-value=5.5e-06 Score=71.26 Aligned_cols=110 Identities=24% Similarity=0.299 Sum_probs=69.2
Q ss_pred HHHHHHHHcC-CCCCCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccC
Q 016981 141 MIEETLRFAG-VSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217 (379)
Q Consensus 141 ~~~~~l~~~~-~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~ 217 (379)
.+.++.+..+ +.. .++.+|||+||++|.|+..+.++. ..+|+|+|+.+.. ..+++.+..+|+
T Consensus 8 KL~ei~~~~~~~~~---~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~------------~~~~~~~i~~d~ 72 (181)
T PF01728_consen 8 KLYEIDEKFKIFKP---GKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD------------PLQNVSFIQGDI 72 (181)
T ss_dssp HHHHHHHTTSSS-T---TTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG------------S-TTEEBTTGGG
T ss_pred HHHHHHHHCCCCCc---ccccEEEEcCCcccceeeeeeecccccceEEEEeccccc------------cccceeeeeccc
Confidence 4555666555 221 135899999999999999999986 4799999998751 114566667776
Q ss_pred CCCC--------CC--CCcccEEEeccccCCCCC----H-------HHHHHHHHHhcCCCCEEEEEecc
Q 016981 218 LQQP--------FP--DGQFDLVWSMESGEHMPD----K-------SKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 218 ~~~~--------~~--~~~fD~V~~~~~l~~~~~----~-------~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
.+.. +. .+.||+|++-.......+ . ...+.-+...|+|||.+++-.+.
T Consensus 73 ~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 73 TNPENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp EEEEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred chhhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 4421 11 268999998774433322 1 23444556789999998887654
No 235
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=98.09 E-value=2.4e-05 Score=65.81 Aligned_cols=156 Identities=16% Similarity=0.130 Sum_probs=90.9
Q ss_pred HHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcC--CEEEEEeCCHHHH----H--HHHHHHHHcCCCCCeEEEEc
Q 016981 144 ETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQA----Q--RANALAAARGLADKVSFQVG 215 (379)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~~----~--~a~~~~~~~~~~~~i~~~~~ 215 (379)
+.|.+.++.+ +.+|+|+=.|.|.+++.++...+ ..|+++-..+... . ..+...++.. ..|++.+-.
T Consensus 39 E~L~FaGlkp-----g~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~-~aN~e~~~~ 112 (238)
T COG4798 39 EVLAFAGLKP-----GATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPV-YANVEVIGK 112 (238)
T ss_pred ceeEEeccCC-----CCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhh-hhhhhhhCC
Confidence 4455667765 99999999999999999998763 3676664433210 0 1111111111 124444444
Q ss_pred cCCCCCCCCCcccEEEeccccCC-------CCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHh
Q 016981 216 DALQQPFPDGQFDLVWSMESGEH-------MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKIC 288 (379)
Q Consensus 216 d~~~~~~~~~~fD~V~~~~~l~~-------~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (379)
+...++ +.+..|++.....-+- -.....+.+.+++.|||||.+++.+........... ..
T Consensus 113 ~~~A~~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~d------t~------ 179 (238)
T COG4798 113 PLVALG-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSD------TI------ 179 (238)
T ss_pred cccccC-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhh------hh------
Confidence 433333 3345555554322221 123478899999999999999998854322111100 00
Q ss_pred hccCCCCCCCHHHHHHHHHhCCCceeEEEecCCC
Q 016981 289 DAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQN 322 (379)
Q Consensus 289 ~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~ 322 (379)
.. ...++..+....+.+||.......+..+
T Consensus 180 ~~----~ri~~a~V~a~veaaGFkl~aeS~ilaN 209 (238)
T COG4798 180 TL----HRIDPAVVIAEVEAAGFKLEAESEILAN 209 (238)
T ss_pred hh----cccChHHHHHHHHhhcceeeeeehhhcC
Confidence 01 1337888999999999998776655443
No 236
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.07 E-value=1.1e-05 Score=69.21 Aligned_cols=98 Identities=26% Similarity=0.358 Sum_probs=73.9
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC----CCCCCcccEEEecc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ----PFPDGQFDLVWSME 234 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~fD~V~~~~ 234 (379)
...|+|.-||.|..++..+.+ +..|++||++|.-+.-|+.+++..|+++++.|+++|+.++ .+....+|+|+.+-
T Consensus 95 ~~~iidaf~g~gGntiqfa~~-~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sp 173 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQ-GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLSP 173 (263)
T ss_pred cchhhhhhhcCCchHHHHHHh-CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecCC
Confidence 568999999999999999887 7899999999999999999999999999999999998775 24444566777654
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCC
Q 016981 235 SGEHMPDKSKFVSELARVTAPAG 257 (379)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG 257 (379)
....-.-...-+-.+...++|.|
T Consensus 174 pwggp~y~~~~~~DL~~~~~p~~ 196 (263)
T KOG2730|consen 174 PWGGPSYLRADVYDLETHLKPMG 196 (263)
T ss_pred CCCCcchhhhhhhhhhhhcchhH
Confidence 44332222333344445555553
No 237
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.06 E-value=0.0001 Score=69.36 Aligned_cols=118 Identities=24% Similarity=0.264 Sum_probs=86.0
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcC---------------------------------C-----
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG---------------------------------A----- 182 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~---------------------------------~----- 182 (379)
+...++...+..+ +..++|-=||+|.+.+..|-... +
T Consensus 179 LAaAil~lagw~~-----~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~ 253 (381)
T COG0116 179 LAAAILLLAGWKP-----DEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKE 253 (381)
T ss_pred HHHHHHHHcCCCC-----CCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCc
Confidence 4444555555554 67899999999999998876531 1
Q ss_pred --EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC-CCCCH---H----HHHHHHHHh
Q 016981 183 --KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE-HMPDK---S----KFVSELARV 252 (379)
Q Consensus 183 --~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~-~~~~~---~----~~l~~~~r~ 252 (379)
.++|+|+++.+++.|+.++...|+.+.|.|.++|+..+.-+-+.+|+|+++--.. -+.+. . .+.+.+.+.
T Consensus 254 ~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~ 333 (381)
T COG0116 254 LPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRL 333 (381)
T ss_pred cceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHH
Confidence 3779999999999999999999999999999999999854337899999974332 22222 2 233344456
Q ss_pred cCCCCEEEEEe
Q 016981 253 TAPAGTIIIVT 263 (379)
Q Consensus 253 LkpgG~l~i~~ 263 (379)
++--+..+++.
T Consensus 334 ~~~ws~~v~tt 344 (381)
T COG0116 334 LAGWSRYVFTT 344 (381)
T ss_pred hcCCceEEEEc
Confidence 66666777665
No 238
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.01 E-value=3.6e-05 Score=70.29 Aligned_cols=104 Identities=22% Similarity=0.248 Sum_probs=77.3
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
..++.+++.+.+.. +..|||+|+|+|.++..|++. +.+|+++|+++.+.+..++++. ..+++.++.+|+.+
T Consensus 17 ~~~~~Iv~~~~~~~-----~~~VlEiGpG~G~lT~~L~~~-~~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~ 87 (262)
T PF00398_consen 17 NIADKIVDALDLSE-----GDTVLEIGPGPGALTRELLKR-GKRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLK 87 (262)
T ss_dssp HHHHHHHHHHTCGT-----TSEEEEESSTTSCCHHHHHHH-SSEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTT
T ss_pred HHHHHHHHhcCCCC-----CCEEEEeCCCCccchhhHhcc-cCcceeecCcHhHHHHHHHHhh---hcccceeeecchhc
Confidence 46667777776654 899999999999999999998 5899999999999999988765 23689999999998
Q ss_pred CCCCC---CcccEEEeccccCCCCCHHHHHHHHHHhcCC
Q 016981 220 QPFPD---GQFDLVWSMESGEHMPDKSKFVSELARVTAP 255 (379)
Q Consensus 220 ~~~~~---~~fD~V~~~~~l~~~~~~~~~l~~~~r~Lkp 255 (379)
..... +....|+++-.. ++ ...++.++...-+.
T Consensus 88 ~~~~~~~~~~~~~vv~NlPy-~i--s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 88 WDLYDLLKNQPLLVVGNLPY-NI--SSPILRKLLELYRF 123 (262)
T ss_dssp SCGGGHCSSSEEEEEEEETG-TG--HHHHHHHHHHHGGG
T ss_pred cccHHhhcCCceEEEEEecc-cc--hHHHHHHHhhcccc
Confidence 76543 345566665433 22 24566666664444
No 239
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.96 E-value=6.7e-05 Score=64.22 Aligned_cols=104 Identities=19% Similarity=0.264 Sum_probs=80.6
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC--CCCCCcccEEEeccc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDGQFDLVWSMES 235 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~V~~~~~ 235 (379)
++.+||.||-|-|+....+.+.-..+-+.++..|..++..+...-.. ..|+....+--++. .++++.||.|+---.
T Consensus 101 kggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e--k~nViil~g~WeDvl~~L~d~~FDGI~yDTy 178 (271)
T KOG1709|consen 101 KGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE--KENVIILEGRWEDVLNTLPDKHFDGIYYDTY 178 (271)
T ss_pred CCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc--ccceEEEecchHhhhccccccCcceeEeech
Confidence 38999999999999988888765556778899999988777643211 24677776665553 367889999986544
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 236 GEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
-++..|...+.+.+.|+|||+|++-+..
T Consensus 179 ~e~yEdl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 179 SELYEDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred hhHHHHHHHHHHHHhhhcCCCceEEEec
Confidence 4777888899999999999999987765
No 240
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.95 E-value=1.7e-06 Score=67.42 Aligned_cols=99 Identities=24% Similarity=0.384 Sum_probs=44.4
Q ss_pred EEeCCcccHHHHHHHHHc--C--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC--CCCCCcccEEEecccc
Q 016981 163 VDVGCGIGGSSRYLAKKF--G--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDGQFDLVWSMESG 236 (379)
Q Consensus 163 LDiGcGtG~~~~~l~~~~--~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~V~~~~~l 236 (379)
||+|+..|..+..+++.. . .+++++|..+. .+.+++..++.++..+++++.++..+. .++.++||+|+.-..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD- 78 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC-
Confidence 689999999988888755 2 37999999985 334444444455667899999998654 233578999986542
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
|..+.....+..+.+.|+|||.+++-+
T Consensus 79 H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp --HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 222334677888999999999998865
No 241
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.93 E-value=9.9e-05 Score=70.96 Aligned_cols=104 Identities=27% Similarity=0.305 Sum_probs=86.6
Q ss_pred CC-EEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 159 PK-NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~-~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
.. ++|-+|||.-.+...+-+.+-..++-+|+|+..++....+... . .+.+.+...|+..+.|++++||+|+.-+.+.
T Consensus 48 ~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~-~-~~~~~~~~~d~~~l~fedESFdiVIdkGtlD 125 (482)
T KOG2352|consen 48 SDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAK-E-RPEMQMVEMDMDQLVFEDESFDIVIDKGTLD 125 (482)
T ss_pred hhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhcccc-C-CcceEEEEecchhccCCCcceeEEEecCccc
Confidence 44 9999999999988888876545899999999999887776542 2 2578999999999999999999999999998
Q ss_pred CCC-C---------HHHHHHHHHHhcCCCCEEEEEec
Q 016981 238 HMP-D---------KSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 238 ~~~-~---------~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
++- + ....+.++.|+|+|||+++....
T Consensus 126 al~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 126 ALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 872 1 13567899999999999888776
No 242
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.91 E-value=5.7e-05 Score=69.97 Aligned_cols=103 Identities=17% Similarity=0.182 Sum_probs=72.5
Q ss_pred HHHHHHHHcCCCC---CCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccC
Q 016981 141 MIEETLRFAGVSE---DPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217 (379)
Q Consensus 141 ~~~~~l~~~~~~~---~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~ 217 (379)
.+.+.+....... ....++.++||+||++|.|+..+.++ |.+|++||..+ |-.. +. -.+++.....|.
T Consensus 191 KLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~r-G~~V~AVD~g~-l~~~----L~---~~~~V~h~~~d~ 261 (357)
T PRK11760 191 KLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRR-GMFVTAVDNGP-MAQS----LM---DTGQVEHLRADG 261 (357)
T ss_pred HHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHc-CCEEEEEechh-cCHh----hh---CCCCEEEEeccC
Confidence 4555555444321 12346899999999999999999998 78999999654 2221 11 125788888887
Q ss_pred CCCCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCC
Q 016981 218 LQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPA 256 (379)
Q Consensus 218 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~Lkpg 256 (379)
.....+.+.+|.|+|-.+ ..|.++++-+.+.|..|
T Consensus 262 fr~~p~~~~vDwvVcDmv----e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 262 FKFRPPRKNVDWLVCDMV----EKPARVAELMAQWLVNG 296 (357)
T ss_pred cccCCCCCCCCEEEEecc----cCHHHHHHHHHHHHhcC
Confidence 665322678999998643 45678888888998777
No 243
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.90 E-value=3.7e-05 Score=64.34 Aligned_cols=101 Identities=21% Similarity=0.163 Sum_probs=79.7
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
...+.|+|.|+|.++...++. ..+|++++.+|.....|.+++.-.|. .|++++.+|+.+..| ...|+|+|-..=..
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y~f--e~ADvvicEmlDTa 108 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDYDF--ENADVVICEMLDTA 108 (252)
T ss_pred hhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCC-cceEEEecccccccc--cccceeHHHHhhHH
Confidence 467999999999999988876 67999999999999999999866665 689999999988877 56799986422111
Q ss_pred --CCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 239 --MPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 239 --~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
......+++.+...||-++.++=..
T Consensus 109 Li~E~qVpV~n~vleFLr~d~tiiPq~ 135 (252)
T COG4076 109 LIEEKQVPVINAVLEFLRYDPTIIPQE 135 (252)
T ss_pred hhcccccHHHHHHHHHhhcCCccccHH
Confidence 1333577888888999998876543
No 244
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.88 E-value=0.00012 Score=73.77 Aligned_cols=77 Identities=19% Similarity=0.115 Sum_probs=54.9
Q ss_pred CCEEEEeCCcccHHHHHHHHHcC---------CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----CCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFG---------AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FPD 224 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~---------~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~ 224 (379)
..+|||.|||+|.+...+++... ..++|+|+++..+..++.++...+. ..+.+...|..... -..
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeeccccccccccccccc
Confidence 57999999999999988877551 4789999999999999998876541 23444544433211 112
Q ss_pred CcccEEEecccc
Q 016981 225 GQFDLVWSMESG 236 (379)
Q Consensus 225 ~~fD~V~~~~~l 236 (379)
+.||+|+++=-.
T Consensus 111 ~~fD~IIgNPPy 122 (524)
T TIGR02987 111 DLFDIVITNPPY 122 (524)
T ss_pred CcccEEEeCCCc
Confidence 579999986433
No 245
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.85 E-value=0.00018 Score=66.44 Aligned_cols=106 Identities=23% Similarity=0.205 Sum_probs=77.6
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHH--HHc----CCCCCeEEEEccCCCC-CCCCCcccE
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALA--AAR----GLADKVSFQVGDALQQ-PFPDGQFDL 229 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~--~~~----~~~~~i~~~~~d~~~~-~~~~~~fD~ 229 (379)
...+||-+|.|.|.-++.+.+.- -.+++-+|++|.|++.++++. ... --.+++.++..|+... .-..+.||.
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~ 368 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDV 368 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccE
Confidence 36799999999999999999864 368999999999999998432 221 1236788898888764 233568999
Q ss_pred EEeccccCCCCC-----HHHHHHHHHHhcCCCCEEEEEe
Q 016981 230 VWSMESGEHMPD-----KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 230 V~~~~~l~~~~~-----~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
|+...-=-.-+. -.++..-+.+.|+++|.+++..
T Consensus 369 vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 369 VIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred EEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 986321111111 1567888999999999999875
No 246
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.82 E-value=0.00012 Score=67.38 Aligned_cols=105 Identities=23% Similarity=0.336 Sum_probs=83.2
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-C-CCCCcccEEEe-
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-FPDGQFDLVWS- 232 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~~~~~fD~V~~- 232 (379)
++.+|||+.++.|.=+..+++.. .+.+++.|+++.-+...++++++.|. .++.....|.... + .....||.|+.
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~-~~v~~~~~D~~~~~~~~~~~~fd~VlvD 163 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV-FNVIVINADARKLDPKKPESKFDRVLVD 163 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT--SSEEEEESHHHHHHHHHHTTTEEEEEEE
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC-ceEEEEeeccccccccccccccchhhcC
Confidence 38899999999999999999887 47999999999999999999999987 5787777777665 2 22346999995
Q ss_pred -----ccccCCCCCH----------------HHHHHHHHHhc----CCCCEEEEEe
Q 016981 233 -----MESGEHMPDK----------------SKFVSELARVT----APAGTIIIVT 263 (379)
Q Consensus 233 -----~~~l~~~~~~----------------~~~l~~~~r~L----kpgG~l~i~~ 263 (379)
.+++..-++. .++|+.+.+.+ ||||+++.++
T Consensus 164 aPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsT 219 (283)
T PF01189_consen 164 APCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYST 219 (283)
T ss_dssp CSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEE
T ss_pred CCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEe
Confidence 2233333331 46889999999 9999999987
No 247
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.80 E-value=0.00036 Score=60.65 Aligned_cols=103 Identities=18% Similarity=0.251 Sum_probs=72.0
Q ss_pred CCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC---CCCCcccE
Q 016981 155 PTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDL 229 (379)
Q Consensus 155 ~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~ 229 (379)
+.+++.+||-+|..+|....++++-. .+.|++++.|+......-..+++. +|+--+..|+.... .--+..|+
T Consensus 70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~P~~Y~~lv~~VDv 146 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARHPEKYRMLVEMVDV 146 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTSGGGGTTTS--EEE
T ss_pred CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCCChHHhhcccccccE
Confidence 34459999999999999999999876 469999999997655544444433 58988999987531 11358999
Q ss_pred EEeccccCCCCCH-HHHHHHHHHhcCCCCEEEEEe
Q 016981 230 VWSMESGEHMPDK-SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 230 V~~~~~l~~~~~~-~~~l~~~~r~LkpgG~l~i~~ 263 (379)
|++--. + ++. .-++.++...||+||.++++-
T Consensus 147 I~~DVa--Q-p~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 147 IFQDVA--Q-PDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp EEEE-S--S-TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEecCC--C-hHHHHHHHHHHHhhccCCcEEEEEE
Confidence 986422 2 344 556777888999999999875
No 248
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.76 E-value=4.1e-05 Score=73.80 Aligned_cols=75 Identities=27% Similarity=0.414 Sum_probs=63.0
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCC
Q 016981 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (379)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 218 (379)
..+...+-+++++.. +..+||+-||||.++..+++. -.+|+||++++..++.|+.+++.+|+ .|.+|+++-++
T Consensus 369 evLys~i~e~~~l~~-----~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~Ngi-sNa~Fi~gqaE 441 (534)
T KOG2187|consen 369 EVLYSTIGEWAGLPA-----DKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGI-SNATFIVGQAE 441 (534)
T ss_pred HHHHHHHHHHhCCCC-----CcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCc-cceeeeecchh
Confidence 334444455666665 789999999999999999987 46999999999999999999999998 69999999666
Q ss_pred CC
Q 016981 219 QQ 220 (379)
Q Consensus 219 ~~ 220 (379)
++
T Consensus 442 ~~ 443 (534)
T KOG2187|consen 442 DL 443 (534)
T ss_pred hc
Confidence 64
No 249
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.76 E-value=0.0012 Score=57.10 Aligned_cols=125 Identities=15% Similarity=0.156 Sum_probs=92.2
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
+.++.||||-.|.+..++.+.. ...+++.|+++.-++.|.+++...++.++++...+|....--+++.+|.|+..++=.
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMGG 96 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMGG 96 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCCcH
Confidence 5669999999999999999987 568999999999999999999999998899999999744222345799998776544
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEE
Q 016981 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 317 (379)
.+ ...+|.+-...|+.=-++++.- -....+++++|.+.+|+.+...
T Consensus 97 ~l--I~~ILee~~~~l~~~~rlILQP--------------------------------n~~~~~LR~~L~~~~~~I~~E~ 142 (226)
T COG2384 97 TL--IREILEEGKEKLKGVERLILQP--------------------------------NIHTYELREWLSANSYEIKAET 142 (226)
T ss_pred HH--HHHHHHHhhhhhcCcceEEECC--------------------------------CCCHHHHHHHHHhCCceeeeee
Confidence 32 2455555555555333444421 1146678888888888776654
No 250
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.75 E-value=0.00012 Score=60.24 Aligned_cols=58 Identities=22% Similarity=0.246 Sum_probs=49.6
Q ss_pred EEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 161 NVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 161 ~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
.+||+|||.|.++..+++.. +.+|+++|+++.+.+.++++++.++++ ++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeC
Confidence 48999999999999999876 458999999999999999999887763 68887776654
No 251
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.72 E-value=0.0002 Score=58.03 Aligned_cols=81 Identities=20% Similarity=0.282 Sum_probs=59.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--CCCCcccEEEeccccCCCC--C------H---HHHHHHH
Q 016981 183 KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSMESGEHMP--D------K---SKFVSEL 249 (379)
Q Consensus 183 ~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~V~~~~~l~~~~--~------~---~~~l~~~ 249 (379)
+|+|+|+-+++++.++++++..++..++.++..+-+.+. .+.+++|+|+.+ |.++| | + ..+++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFN--LGYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFN--LGYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEE--ESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEE--CCcCCCCCCCCCcCcHHHHHHHHHH
Confidence 589999999999999999999998888999998877663 233589998865 44553 2 2 4688899
Q ss_pred HHhcCCCCEEEEEecc
Q 016981 250 ARVTAPAGTIIIVTWC 265 (379)
Q Consensus 250 ~r~LkpgG~l~i~~~~ 265 (379)
.++|+|||.+.++.+.
T Consensus 79 l~lL~~gG~i~iv~Y~ 94 (140)
T PF06962_consen 79 LELLKPGGIITIVVYP 94 (140)
T ss_dssp HHHEEEEEEEEEEE--
T ss_pred HHhhccCCEEEEEEeC
Confidence 9999999999998754
No 252
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.71 E-value=6.8e-05 Score=65.58 Aligned_cols=150 Identities=13% Similarity=0.110 Sum_probs=97.8
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeE-EEEccCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVS-FQVGDALQ 219 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~-~~~~d~~~ 219 (379)
.+...++...+.. ++..+||+|..||.++..+.++....|+++|..-.++.+--+. .+++. +...|+..
T Consensus 66 KL~~ale~F~l~~----k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~------d~rV~~~E~tN~r~ 135 (245)
T COG1189 66 KLEKALEEFELDV----KGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN------DPRVIVLERTNVRY 135 (245)
T ss_pred HHHHHHHhcCcCC----CCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc------CCcEEEEecCChhh
Confidence 4555666555554 5899999999999999999998667899999999888763221 23443 44456555
Q ss_pred CC---CCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCC--
Q 016981 220 QP---FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLP-- 294 (379)
Q Consensus 220 ~~---~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 294 (379)
+. + .+..|++++--++..+ ..+|..+..+++|+|.++... .++.... ... +.......
T Consensus 136 l~~~~~-~~~~d~~v~DvSFISL---~~iLp~l~~l~~~~~~~v~Lv--KPQFEag--------r~~---v~kkGvv~d~ 198 (245)
T COG1189 136 LTPEDF-TEKPDLIVIDVSFISL---KLILPALLLLLKDGGDLVLLV--KPQFEAG--------REQ---VGKKGVVRDP 198 (245)
T ss_pred CCHHHc-ccCCCeEEEEeehhhH---HHHHHHHHHhcCCCceEEEEe--cchhhhh--------hhh---cCcCceecCc
Confidence 42 3 2468899987666654 788999999999999877754 1111000 000 10110010
Q ss_pred --CCCCHHHHHHHHHhCCCceeEEE
Q 016981 295 --AWCSTADYVKLLQSLSLEDIKAE 317 (379)
Q Consensus 295 --~~~~~~~~~~~l~~aGF~~v~~~ 317 (379)
.-.-..++.+++++.||....+.
T Consensus 199 ~~~~~v~~~i~~~~~~~g~~~~gl~ 223 (245)
T COG1189 199 KLHAEVLSKIENFAKELGFQVKGLI 223 (245)
T ss_pred chHHHHHHHHHHHHhhcCcEEeeeE
Confidence 01135677888899999987764
No 253
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.70 E-value=0.00052 Score=62.96 Aligned_cols=81 Identities=15% Similarity=0.166 Sum_probs=50.5
Q ss_pred CCEEEEeCCcccH-HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc-CCCCCeEEEEccCCC-----CCCCCCcccEEE
Q 016981 159 PKNVVDVGCGIGG-SSRYLAKKFGAKCQGITLSPVQAQRANALAAAR-GLADKVSFQVGDALQ-----QPFPDGQFDLVW 231 (379)
Q Consensus 159 ~~~vLDiGcGtG~-~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~i~~~~~d~~~-----~~~~~~~fD~V~ 231 (379)
..++||||||... .....++.++.+++|+|+++..++.|++++..+ ++..+|.++...-.. +..+++.||+.+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm 182 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM 182 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence 6789999999864 455555556999999999999999999999998 888889887654222 112346899999
Q ss_pred eccccCCC
Q 016981 232 SMESGEHM 239 (379)
Q Consensus 232 ~~~~l~~~ 239 (379)
|+=-++.-
T Consensus 183 CNPPFy~s 190 (299)
T PF05971_consen 183 CNPPFYSS 190 (299)
T ss_dssp E-----SS
T ss_pred cCCccccC
Confidence 98777654
No 254
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.65 E-value=0.00037 Score=64.33 Aligned_cols=90 Identities=13% Similarity=0.130 Sum_probs=73.5
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
+++++++.+...+ +..++|.-+|.|..+..+++.. .++|+|+|.++.+++.+++++... ..++.++.+++.+
T Consensus 8 ll~Evl~~L~~~~-----ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~ 80 (305)
T TIGR00006 8 LLDEVVEGLNIKP-----DGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFAN 80 (305)
T ss_pred hHHHHHHhcCcCC-----CCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHH
Confidence 6788888876554 7899999999999999999886 579999999999999999988754 3589999999876
Q ss_pred CC-----CCCCcccEEEeccccC
Q 016981 220 QP-----FPDGQFDLVWSMESGE 237 (379)
Q Consensus 220 ~~-----~~~~~fD~V~~~~~l~ 237 (379)
+. ....++|.|+....+.
T Consensus 81 l~~~l~~~~~~~vDgIl~DLGvS 103 (305)
T TIGR00006 81 FFEHLDELLVTKIDGILVDLGVS 103 (305)
T ss_pred HHHHHHhcCCCcccEEEEeccCC
Confidence 42 2335799999876553
No 255
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.64 E-value=0.0025 Score=54.35 Aligned_cols=103 Identities=16% Similarity=0.256 Sum_probs=75.2
Q ss_pred CCCCCCEEEEeCCcccHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC---CCCCcccEE
Q 016981 155 PTKRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLV 230 (379)
Q Consensus 155 ~~~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~V 230 (379)
+.+++.+||=+|..+|....++++-.+ ..+++++.|+......-..+.+. +|+--+..|+.... .--+..|+|
T Consensus 73 pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA~~P~~Y~~~Ve~VDvi 149 (231)
T COG1889 73 PIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDARKPEKYRHLVEKVDVI 149 (231)
T ss_pred CcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---CCceeeecccCCcHHhhhhcccccEE
Confidence 344599999999999999999998764 68999999998876655555543 57888888986531 113568888
Q ss_pred EeccccCCCCCH-HHHHHHHHHhcCCCCEEEEEe
Q 016981 231 WSMESGEHMPDK-SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 231 ~~~~~l~~~~~~-~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+.- +- -++. .-+..++...||+||.++++-
T Consensus 150 y~D-VA--Qp~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 150 YQD-VA--QPNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred EEe-cC--CchHHHHHHHHHHHhcccCCeEEEEE
Confidence 753 11 1333 446778899999999877764
No 256
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.61 E-value=0.00025 Score=60.28 Aligned_cols=103 Identities=23% Similarity=0.252 Sum_probs=71.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCC------CCCeEEEEccCCCCCCCCCcccEEE
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGL------ADKVSFQVGDALQQPFPDGQFDLVW 231 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~------~~~i~~~~~d~~~~~~~~~~fD~V~ 231 (379)
...+.|||||-|.+...|+..+ ..-++|.+|-...-++.+++++..+. ..|+.+...+.... -++-|..-.
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~--lpn~f~kgq 138 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKF--LPNFFEKGQ 138 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhh--ccchhhhcc
Confidence 5679999999999999999998 66899999998888888888876541 24566665555442 112222222
Q ss_pred eccccCCCCCH-------------HHHHHHHHHhcCCCCEEEEEe
Q 016981 232 SMESGEHMPDK-------------SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 232 ~~~~l~~~~~~-------------~~~l~~~~r~LkpgG~l~i~~ 263 (379)
..-.+..++|+ ..++.+..-+|++||.++..+
T Consensus 139 Lskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 139 LSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred cccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 22223333333 357888899999999988865
No 257
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=97.56 E-value=0.0041 Score=58.72 Aligned_cols=160 Identities=16% Similarity=0.193 Sum_probs=81.7
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc-----------C------CEEEEEeCCHHHHH-HHHH------HHHHcCCCCCeE--
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF-----------G------AKCQGITLSPVQAQ-RANA------LAAARGLADKVS-- 211 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-----------~------~~v~gvD~s~~~~~-~a~~------~~~~~~~~~~i~-- 211 (379)
...+|+|+||.+|..+..+.... + .+|+--|+-..-.. ..+. .... ..++-
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~---~~~~f~~ 92 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKK---FRNYFVS 92 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHH---TTSEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCC---CceEEEE
Confidence 36899999999999887655422 1 26777886332111 1111 1111 12332
Q ss_pred EEEccCCCCCCCCCcccEEEeccccCCCCCH---------------------------------------HHHHHHHHHh
Q 016981 212 FQVGDALQQPFPDGQFDLVWSMESGEHMPDK---------------------------------------SKFVSELARV 252 (379)
Q Consensus 212 ~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~---------------------------------------~~~l~~~~r~ 252 (379)
-+-+.+..--+|+++.|++++...+|++... ..+|+.=++-
T Consensus 93 gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~E 172 (334)
T PF03492_consen 93 GVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEE 172 (334)
T ss_dssp EEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 2234555545789999999999999987310 1133333456
Q ss_pred cCCCCEEEEEeccCCCCCCCcc---ccchHHHHHHHHHhh----------ccCCC-CCCCHHHHHHHHHhCC-CceeEEE
Q 016981 253 TAPAGTIIIVTWCHRDLAPSEE---SLQPWEQELLKKICD----------AYYLP-AWCSTADYVKLLQSLS-LEDIKAE 317 (379)
Q Consensus 253 LkpgG~l~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~----------~~~~~-~~~~~~~~~~~l~~aG-F~~v~~~ 317 (379)
|+|||++++.-...++..+... .+.......+..... .+.+| ++.+.+++++.+++.| |++...+
T Consensus 173 Lv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~~le 252 (334)
T PF03492_consen 173 LVPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIEKLE 252 (334)
T ss_dssp EEEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEEEEE
T ss_pred eccCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEEEEE
Confidence 8999999999876665322222 122222233333222 22333 3569999999998887 7765555
Q ss_pred ecC
Q 016981 318 DWS 320 (379)
Q Consensus 318 ~~~ 320 (379)
.+.
T Consensus 253 ~~~ 255 (334)
T PF03492_consen 253 LFE 255 (334)
T ss_dssp EEE
T ss_pred EEe
Confidence 444
No 258
>PRK10742 putative methyltransferase; Provisional
Probab=97.40 E-value=0.0013 Score=58.49 Aligned_cols=90 Identities=21% Similarity=0.255 Sum_probs=67.4
Q ss_pred HHHHHHcCCCCCCCCCCC--EEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc------C--CCCCeEE
Q 016981 143 EETLRFAGVSEDPTKRPK--NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR------G--LADKVSF 212 (379)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~--~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~------~--~~~~i~~ 212 (379)
+.+++..+++. +. +|||+-+|+|..+..++.+ |++|+++|-++......+..++.. + +..++++
T Consensus 76 ~~l~kAvglk~-----g~~p~VLD~TAGlG~Da~~las~-G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l 149 (250)
T PRK10742 76 EAVAKAVGIKG-----DYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQL 149 (250)
T ss_pred cHHHHHhCCCC-----CCCCEEEECCCCccHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEE
Confidence 34455556554 55 8999999999999999987 788999999999999888888764 2 1246888
Q ss_pred EEccCCCC-CCCCCcccEEEeccccCC
Q 016981 213 QVGDALQQ-PFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 213 ~~~d~~~~-~~~~~~fD~V~~~~~l~~ 238 (379)
+.+|..+. .-...+||+|++-=++.|
T Consensus 150 ~~~da~~~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 150 IHASSLTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred EeCcHHHHHhhCCCCCcEEEECCCCCC
Confidence 88887654 212347999987666655
No 259
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.38 E-value=4.3e-05 Score=61.94 Aligned_cols=55 Identities=20% Similarity=0.312 Sum_probs=44.0
Q ss_pred eEEEEccCCCCCCCCCcccEEEeccccCCCC--CHHHHHHHHHHhcCCCCEEEEEec
Q 016981 210 VSFQVGDALQQPFPDGQFDLVWSMESGEHMP--DKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 210 i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~--~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+.+++.-....+|.+++.|+|++-++++|+. .-..++++++|.|||||+|-++..
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvP 87 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVP 87 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcC
Confidence 3333333344578899999999999999995 346899999999999999999873
No 260
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.35 E-value=0.0018 Score=54.40 Aligned_cols=99 Identities=17% Similarity=0.307 Sum_probs=67.0
Q ss_pred CCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-cCCCC--------CCCCC
Q 016981 157 KRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVG-DALQQ--------PFPDG 225 (379)
Q Consensus 157 ~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~--------~~~~~ 225 (379)
+|+.+|||+||..|.|+....++. .+.|.|||+-.-. .+..+.++.+ |+.+. .+++.
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~------------p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r 135 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE------------PPEGATIIQGNDVTDPETYRKIFEALPNR 135 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc------------CCCCcccccccccCCHHHHHHHHHhCCCC
Confidence 469999999999999999988877 4689999985422 1234555555 66652 24677
Q ss_pred cccEEEeccccCCC-----CCHHH-------HHHHHHHhcCCCCEEEEEeccCCC
Q 016981 226 QFDLVWSMESGEHM-----PDKSK-------FVSELARVTAPAGTIIIVTWCHRD 268 (379)
Q Consensus 226 ~fD~V~~~~~l~~~-----~~~~~-------~l~~~~r~LkpgG~l~i~~~~~~~ 268 (379)
..|+|++-. .+.. .|-.. ++.-....++|+|.+++-.|...+
T Consensus 136 ~VdvVlSDM-apnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e 189 (232)
T KOG4589|consen 136 PVDVVLSDM-APNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE 189 (232)
T ss_pred cccEEEecc-CCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc
Confidence 899998643 2222 22223 333345668899999998876543
No 261
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.34 E-value=0.0014 Score=52.75 Aligned_cols=119 Identities=19% Similarity=0.198 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcc
Q 016981 137 AQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216 (379)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d 216 (379)
+..+.++..+.++.-. +..+.+|+|+|.|+.....++..-...+|+++++-.+.+++-+.-+.|+.....|..-|
T Consensus 56 AtteQv~nVLSll~~n-----~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~Rkd 130 (199)
T KOG4058|consen 56 ATTEQVENVLSLLRGN-----PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKD 130 (199)
T ss_pred ccHHHHHHHHHHccCC-----CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhh
Confidence 3445666777776644 36899999999999988888763357899999999999999998888888889999989
Q ss_pred CCCCCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 217 ALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 217 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
+-+..+.+ |..|+.+.+-..++|. -.++..-|..|..++-.-|.
T Consensus 131 lwK~dl~d--y~~vviFgaes~m~dL---e~KL~~E~p~nt~vvacRFP 174 (199)
T KOG4058|consen 131 LWKVDLRD--YRNVVIFGAESVMPDL---EDKLRTELPANTRVVACRFP 174 (199)
T ss_pred hhhccccc--cceEEEeehHHHHhhh---HHHHHhhCcCCCeEEEEecC
Confidence 88776544 4444444443334333 33445566777777766553
No 262
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=97.32 E-value=0.019 Score=52.18 Aligned_cols=171 Identities=15% Similarity=0.070 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC--CCCeEEE
Q 016981 136 AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL--ADKVSFQ 213 (379)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~i~~~ 213 (379)
....+.++..+....... ...|+.+|||-=.-...+....+..++=+|. |+.++.-++.+.+.+. +.+..++
T Consensus 64 ~~Rtr~~D~~i~~~~~~g-----~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v 137 (260)
T TIGR00027 64 AVRTRFFDDFLLAAVAAG-----IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAV 137 (260)
T ss_pred HHHHHHHHHHHHHHHhcC-----CcEEEEeCCccccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEe
Confidence 345556666665432221 4579999999876665553322456666676 4566666666665432 3578888
Q ss_pred EccCCCC--------CCCCCcccEEEeccccCCCCCH--HHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHH
Q 016981 214 VGDALQQ--------PFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQEL 283 (379)
Q Consensus 214 ~~d~~~~--------~~~~~~fD~V~~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~ 283 (379)
..|+.+. .+..+..-++++-+++.+++.. .++++.+.+...||+.+++-.... ... ..........
T Consensus 138 ~~Dl~~~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~--~~~--~~~~~~~~~~ 213 (260)
T TIGR00027 138 PVDLRQDWPAALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRP--LDG--EWRAGMRAPV 213 (260)
T ss_pred ccCchhhHHHHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccc--cch--hHHHHHHHHH
Confidence 8898621 1223345578888899998653 689999999888998887754332 111 0000011111
Q ss_pred HHHH--hhccCCCCCCCHHHHHHHHHhCCCceeEE
Q 016981 284 LKKI--CDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (379)
Q Consensus 284 ~~~~--~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 316 (379)
.... .........++++++.++|.+.||+....
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 214 YHAARGVDGSGLVFGIDRADVAEWLAERGWRASEH 248 (260)
T ss_pred HHhhhcccccccccCCChhhHHHHHHHCCCeeecC
Confidence 1111 11112223467899999999999997654
No 263
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.31 E-value=0.00031 Score=67.90 Aligned_cols=96 Identities=21% Similarity=0.241 Sum_probs=64.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGA---KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (379)
-..|+|...|.|.++..|.+. .. +|+-+ ..+..+.. +-..|+ +-.++.=.+.++.=+.+||+|++.++
T Consensus 366 iRNVMDMnAg~GGFAAAL~~~-~VWVMNVVP~-~~~ntL~v----IydRGL---IG~yhDWCE~fsTYPRTYDLlHA~~l 436 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALIDD-PVWVMNVVPV-SGPNTLPV----IYDRGL---IGVYHDWCEAFSTYPRTYDLLHADGL 436 (506)
T ss_pred eeeeeeecccccHHHHHhccC-CceEEEeccc-CCCCcchh----hhhccc---chhccchhhccCCCCcchhheehhhh
Confidence 568999999999999999875 32 22222 11222222 112232 22222112334444689999999999
Q ss_pred cCCCCC---HHHHHHHHHHhcCCCCEEEEEe
Q 016981 236 GEHMPD---KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 236 l~~~~~---~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+....+ ...++-|+-|+|+|||.++|-+
T Consensus 437 fs~~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 437 FSLYKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred hhhhcccccHHHHHHHhHhhcCCCceEEEec
Confidence 988764 4789999999999999999976
No 264
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.21 E-value=0.0039 Score=58.98 Aligned_cols=106 Identities=15% Similarity=0.176 Sum_probs=82.6
Q ss_pred CCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC---CCCCcccEEE
Q 016981 157 KRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLVW 231 (379)
Q Consensus 157 ~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~V~ 231 (379)
.++.||||..+-.|.=+.++|... .+.|++.|.+..-+...+.++.+.|+ .+......|...+| ++. +||.|+
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv-~ntiv~n~D~~ef~~~~~~~-~fDRVL 317 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV-TNTIVSNYDGREFPEKEFPG-SFDRVL 317 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC-CceEEEccCcccccccccCc-ccceee
Confidence 578999999999998888887766 46899999999999999999999998 57777778877665 443 899998
Q ss_pred e----cc--ccCCC------C---C-------HHHHHHHHHHhcCCCCEEEEEec
Q 016981 232 S----ME--SGEHM------P---D-------KSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 232 ~----~~--~l~~~------~---~-------~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
. +. ++.-- . + ..++|..+..+++|||+|+.++-
T Consensus 318 LDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTC 372 (460)
T KOG1122|consen 318 LDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTC 372 (460)
T ss_pred ecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEee
Confidence 4 33 22211 1 0 14678888899999999999874
No 265
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.19 E-value=0.0013 Score=58.44 Aligned_cols=79 Identities=24% Similarity=0.369 Sum_probs=60.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
+.+|+|||||.--++....... +..|+|+|++..+++..+..+...++ +..+...|....+ +....|+.+..-+++
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~--~~~~~v~Dl~~~~-~~~~~DlaLllK~lp 182 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV--PHDARVRDLLSDP-PKEPADLALLLKTLP 182 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT---CEEEEEE-TTTSH-TTSEESEEEEET-HH
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC--CcceeEeeeeccC-CCCCcchhhHHHHHH
Confidence 7899999999999988877654 67999999999999999999888775 5777777877664 357799999887777
Q ss_pred CCC
Q 016981 238 HMP 240 (379)
Q Consensus 238 ~~~ 240 (379)
.+.
T Consensus 183 ~le 185 (251)
T PF07091_consen 183 CLE 185 (251)
T ss_dssp HHH
T ss_pred HHH
Confidence 663
No 266
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.12 E-value=0.0012 Score=57.03 Aligned_cols=103 Identities=18% Similarity=0.300 Sum_probs=56.6
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC----C----CCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-----GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----F----PDG 225 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~----~~~ 225 (379)
++.|+|+|.-.|..+..+|+.+ .++|+|+|++...... +..+...+.++++++++|..+.. . ...
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~ 110 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPMSPRITFIQGDSIDPEIVDQVRELASPP 110 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTEEEEES-SSSTHHHHTSGSS----
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccccCceEEEECCCCCHHHHHHHHHhhccC
Confidence 8999999999998887776543 3699999995433221 11122233478999999987642 1 112
Q ss_pred cccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 226 QFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 226 ~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
...+|+ -.+-|.-.+..+.|+....+++||+++++.|.
T Consensus 111 ~~vlVi-lDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 111 HPVLVI-LDSSHTHEHVLAELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp SSEEEE-ESS----SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred CceEEE-ECCCccHHHHHHHHHHhCccCCCCCEEEEEec
Confidence 333444 33333335568888889999999999999773
No 267
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=97.07 E-value=0.0072 Score=53.97 Aligned_cols=104 Identities=22% Similarity=0.166 Sum_probs=71.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH-----cCCCCCeEEEEccCCCC---CCCCCc-ccE
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAA-----RGLADKVSFQVGDALQQ---PFPDGQ-FDL 229 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~-----~~~~~~i~~~~~d~~~~---~~~~~~-fD~ 229 (379)
..+||++|.|+|..+..++...++.|.-.|+...... .+.+... ..+...+.....+-... .+-... ||+
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~-L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVEN-LKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHH-HHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 6789999999998888888766889999998654332 2222111 11112344444333222 122233 999
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
|++..++++......++.-++..|..+|.+++..
T Consensus 166 ilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~ 199 (248)
T KOG2793|consen 166 ILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAY 199 (248)
T ss_pred EEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEE
Confidence 9999999999888999999999999999666655
No 268
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=96.86 E-value=0.0066 Score=58.95 Aligned_cols=126 Identities=15% Similarity=0.115 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHH---c--CCEEEEEeCCHHHHHHHHHHHHHcCCCC
Q 016981 134 HRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKK---F--GAKCQGITLSPVQAQRANALAAARGLAD 208 (379)
Q Consensus 134 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~---~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~ 208 (379)
+...++..+..+++..+... .+....|+-+|.|-|-+.....+. . ..++++++-+|.++-..+.+ ...++..
T Consensus 345 Y~~Yq~Ai~~AL~Drvpd~~--a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~-n~~~W~~ 421 (649)
T KOG0822|consen 345 YDQYQQAILKALLDRVPDES--AKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNR-NFECWDN 421 (649)
T ss_pred HHHHHHHHHHHHHhhCcccc--cCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhh-chhhhcC
Confidence 34455566666666654332 112557788999999886654432 2 45899999999988776653 3334567
Q ss_pred CeEEEEccCCCCCCCCCcccEEEeccccCCCCCH---HHHHHHHHHhcCCCCEEEEEe
Q 016981 209 KVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDK---SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 209 ~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~---~~~l~~~~r~LkpgG~l~i~~ 263 (379)
++.++..|+...+-|..+.|+++ ...|..+.|- .+.|..+-+.|||+|..+=..
T Consensus 422 ~Vtii~~DMR~w~ap~eq~DI~V-SELLGSFGDNELSPECLDG~q~fLkpdgIsIP~s 478 (649)
T KOG0822|consen 422 RVTIISSDMRKWNAPREQADIIV-SELLGSFGDNELSPECLDGAQKFLKPDGISIPSS 478 (649)
T ss_pred eeEEEeccccccCCchhhccchH-HHhhccccCccCCHHHHHHHHhhcCCCceEccch
Confidence 89999999999875558899987 4666666554 789999999999998765433
No 269
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=96.83 E-value=0.043 Score=48.46 Aligned_cols=145 Identities=19% Similarity=0.252 Sum_probs=89.7
Q ss_pred HHccC-chhHHHhhhccccccccCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc
Q 016981 102 FYDES-SSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF 180 (379)
Q Consensus 102 ~yd~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~ 180 (379)
|||.. ...|+++.. -+.||..... ....+....++....+ +...+|+|.|+..-++.|.+.+
T Consensus 38 FYD~~GS~LFe~I~~---LPEYYpTRtE------aaIl~~~a~Eia~~~g--------~~~lveLGsGns~Ktr~Llda~ 100 (321)
T COG4301 38 FYDDRGSELFEQITR---LPEYYPTRTE------AAILQARAAEIASITG--------ACTLVELGSGNSTKTRILLDAL 100 (321)
T ss_pred eecccHHHHHHHHhc---cccccCchhH------HHHHHHHHHHHHHhhC--------cceEEEecCCccHHHHHHHHHh
Confidence 55554 344554432 3567765542 2223334444444433 7899999999998888777765
Q ss_pred -C----CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC-CC-CCC-CcccEEEeccccCCCC--CHHHHHHHHH
Q 016981 181 -G----AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-QP-FPD-GQFDLVWSMESGEHMP--DKSKFVSELA 250 (379)
Q Consensus 181 -~----~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~-~~~-~~fD~V~~~~~l~~~~--~~~~~l~~~~ 250 (379)
. .+++.+|+|...+....+.+...-..-.+.-+++|++. +. .+. ++-=.++...++..+. +-..+|.++.
T Consensus 101 ~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~ 180 (321)
T COG4301 101 AHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLFVFLGSTLGNLTPGECAVFLTQLR 180 (321)
T ss_pred hhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEEEEecccccCCChHHHHHHHHHHH
Confidence 2 58999999999887655544443222235556667643 11 222 2222344456677763 3367899999
Q ss_pred HhcCCCCEEEEEe
Q 016981 251 RVTAPAGTIIIVT 263 (379)
Q Consensus 251 r~LkpgG~l~i~~ 263 (379)
..|+||-++++..
T Consensus 181 ~a~~pGd~~LlGv 193 (321)
T COG4301 181 GALRPGDYFLLGV 193 (321)
T ss_pred hcCCCcceEEEec
Confidence 9999999998854
No 270
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.82 E-value=0.011 Score=55.24 Aligned_cols=95 Identities=22% Similarity=0.168 Sum_probs=68.1
Q ss_pred CCCCEEEEeCCc-ccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcc-CCCCCCCCCcccEEEecc
Q 016981 157 KRPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD-ALQQPFPDGQFDLVWSME 234 (379)
Q Consensus 157 ~~~~~vLDiGcG-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d-~~~~~~~~~~fD~V~~~~ 234 (379)
.|+.+|+=+|+| .|..+..+++..+++|+++|.|++-.+.|++.-+ -.++... .....--.+.||+|+..-
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGA-------d~~i~~~~~~~~~~~~~~~d~ii~tv 237 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGA-------DHVINSSDSDALEAVKEIADAIIDTV 237 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCC-------cEEEEcCCchhhHHhHhhCcEEEECC
Confidence 358999998877 5678889999779999999999999999888532 2223222 111111123499998653
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
. ...+....+.||+||.+++....
T Consensus 238 ~-------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 238 G-------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred C-------hhhHHHHHHHHhcCCEEEEECCC
Confidence 3 45688888999999999998865
No 271
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=96.77 E-value=0.15 Score=45.24 Aligned_cols=130 Identities=15% Similarity=0.096 Sum_probs=74.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-CC-CCCcccEEEeccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PF-PDGQFDLVWSMES 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~-~~~~fD~V~~~~~ 235 (379)
+++||-+|=+-- .++.++-.. ..+|+.+|+++..++..++.+++.|++ ++.+..|+.+. |- -.++||++++. -
T Consensus 45 gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~~~~fD~f~TD-P 120 (243)
T PF01861_consen 45 GKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEELRGKFDVFFTD-P 120 (243)
T ss_dssp T-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTTSS-BSEEEE---
T ss_pred CCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHHhcCCCEEEeC-C
Confidence 899999995543 334444333 789999999999999999999999984 99999998763 31 24889999863 1
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceeE
Q 016981 236 GEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIK 315 (379)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 315 (379)
-+-+.-..-++.+....||..|...+..+.+.... .. ...++++.|.+.||.+.+
T Consensus 121 PyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s-----~~--------------------~~~~~Q~~l~~~gl~i~d 175 (243)
T PF01861_consen 121 PYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEAS-----PD--------------------KWLEVQRFLLEMGLVITD 175 (243)
T ss_dssp -SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT-------HH--------------------HHHHHHHHHHTS--EEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCc-----HH--------------------HHHHHHHHHHHCCcCHHH
Confidence 12222236788899999998775555454432210 00 012467788899998776
Q ss_pred EE
Q 016981 316 AE 317 (379)
Q Consensus 316 ~~ 317 (379)
+.
T Consensus 176 ii 177 (243)
T PF01861_consen 176 II 177 (243)
T ss_dssp EE
T ss_pred HH
Confidence 53
No 272
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.74 E-value=0.02 Score=56.94 Aligned_cols=100 Identities=19% Similarity=0.297 Sum_probs=70.4
Q ss_pred CCCCEEEEeCCcc-cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC-----------C--C-
Q 016981 157 KRPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-----------Q--P- 221 (379)
Q Consensus 157 ~~~~~vLDiGcGt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-----------~--~- 221 (379)
.++.+|+=+|||. |..+...++..|+.|+++|.++..++.+++. | .++...|..+ . .
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl----G----A~~v~i~~~e~~~~~~gya~~~s~~~ 234 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM----G----AEFLELDFEEEGGSGDGYAKVMSEEF 234 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----C----CeEEEeccccccccccchhhhcchhH
Confidence 3589999999996 7778888888899999999999998888762 2 2332222211 0 0
Q ss_pred -------CCC--CcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 222 -------FPD--GQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 222 -------~~~--~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+.+ ..+|+|+..-....-+.+..+.+++.+.+||||.++....
T Consensus 235 ~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 235 IKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 011 3589998765544333444446999999999999888764
No 273
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=96.70 E-value=0.011 Score=48.74 Aligned_cols=129 Identities=18% Similarity=0.130 Sum_probs=75.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHH-HHHHHHHcCCCCCeE-EEEccCCC-CCCCCCcccEEEeccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQR-ANALAAARGLADKVS-FQVGDALQ-QPFPDGQFDLVWSMES 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~-a~~~~~~~~~~~~i~-~~~~d~~~-~~~~~~~fD~V~~~~~ 235 (379)
+++++-+|...-..-........++|+.++.++--++. .+ +++. +...|+.. ..--.++||.+.+..+
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~---------dr~ssi~p~df~~~~~~y~~~fD~~as~~s 72 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFR---------DRLSSILPVDFAKNWQKYAGSFDFAASFSS 72 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccc---------cccccccHHHHHHHHHHhhccchhhheech
Confidence 56788888885444333333324578888876421111 01 1111 11122211 1112478999999999
Q ss_pred cCCCC-----CH------HHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHH
Q 016981 236 GEHMP-----DK------SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVK 304 (379)
Q Consensus 236 l~~~~-----~~------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (379)
++|+. |+ .+.+.++.++|||||.|++......+.. .+..++.+.+..+..
T Consensus 73 iEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i-------------------~fNahRiYg~~rL~m 133 (177)
T PF03269_consen 73 IEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAI-------------------QFNAHRIYGPIRLAM 133 (177)
T ss_pred hccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcce-------------------EEecceeecHhHHHH
Confidence 99982 32 5788999999999999999886544321 111222334555555
Q ss_pred HHHhCCCceeEEE
Q 016981 305 LLQSLSLEDIKAE 317 (379)
Q Consensus 305 ~l~~aGF~~v~~~ 317 (379)
++ .||+.+..-
T Consensus 134 m~--~gfe~i~tf 144 (177)
T PF03269_consen 134 MF--YGFEWIDTF 144 (177)
T ss_pred Hh--CCcEEEeee
Confidence 55 789888763
No 274
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.65 E-value=0.044 Score=47.39 Aligned_cols=120 Identities=13% Similarity=0.107 Sum_probs=70.7
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHHc-----------
Q 016981 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG---AKCQGITLSPVQAQRANALAAAR----------- 204 (379)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~---~~v~gvD~s~~~~~~a~~~~~~~----------- 204 (379)
..++.+.+..+.-. .+.++-|-.||+|.+.-.+.-.++ ..|+|-|+++.+++.|++++.-.
T Consensus 37 sEi~qR~l~~l~~~-----~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~e 111 (246)
T PF11599_consen 37 SEIFQRALHYLEGK-----GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREE 111 (246)
T ss_dssp HHHHHHHHCTSSS------S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCC-----CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHH
Confidence 34445555544333 378999999999998766655442 47999999999999999864211
Q ss_pred ------------------------------CCCCCeEEEEccCCCCC-----CCCCcccEEEeccccCCCCCH-------
Q 016981 205 ------------------------------GLADKVSFQVGDALQQP-----FPDGQFDLVWSMESGEHMPDK------- 242 (379)
Q Consensus 205 ------------------------------~~~~~i~~~~~d~~~~~-----~~~~~fD~V~~~~~l~~~~~~------- 242 (379)
|-.......+.|+.+.. -.....|+|+.---..++.+|
T Consensus 112 L~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~ 191 (246)
T PF11599_consen 112 LRELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGG 191 (246)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HH
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCC
Confidence 11223667888887621 112336999987666666544
Q ss_pred --HHHHHHHHHhcCCCCEEEEEe
Q 016981 243 --SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 243 --~~~l~~~~r~LkpgG~l~i~~ 263 (379)
..+|..++.+|.+++++++++
T Consensus 192 p~~~ml~~l~~vLp~~sVV~v~~ 214 (246)
T PF11599_consen 192 PVAQMLNSLAPVLPERSVVAVSD 214 (246)
T ss_dssp HHHHHHHHHHCCS-TT-EEEEEE
T ss_pred cHHHHHHHHHhhCCCCcEEEEec
Confidence 579999999996566666644
No 275
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=96.63 E-value=0.0082 Score=57.50 Aligned_cols=101 Identities=18% Similarity=0.210 Sum_probs=77.5
Q ss_pred CCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCC-CeEEEEccCCCCC-CCCCcccEEEecc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLAD-KVSFQVGDALQQP-FPDGQFDLVWSME 234 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~-~~~~~fD~V~~~~ 234 (379)
+.+|||.=+|+|.=++..+... ..+|+.-|+|+.+++..+++++.+++.. .+.+...|+..+- .....||+|=.
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl-- 127 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDL-- 127 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEe--
Confidence 5699999999999888888774 3689999999999999999999999877 6888888887652 24678999963
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 235 SGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.-+..+..+|..+.+.+|.||.|.++.
T Consensus 128 --DPfGSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 128 --DPFGSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp ----SS--HHHHHHHHHHEEEEEEEEEEE
T ss_pred --CCCCCccHhHHHHHHHhhcCCEEEEec
Confidence 345567899999999999999999975
No 276
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.59 E-value=0.011 Score=61.44 Aligned_cols=103 Identities=20% Similarity=0.228 Sum_probs=62.4
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-------------CCEEEEEeCCH---HHHHHHH-----------HHHHH-----cCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-------------GAKCQGITLSP---VQAQRAN-----------ALAAA-----RGL 206 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-------------~~~v~gvD~s~---~~~~~a~-----------~~~~~-----~~~ 206 (379)
.-+|+|+|=|+|.......+.. ..+++++|..| ..+..+. +.... .|+
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 5799999999999665554322 13788999643 3333322 22211 111
Q ss_pred ------CC--CeEEEEccCCCC-CCCCCcccEEEeccccCCCCCH----HHHHHHHHHhcCCCCEEEEE
Q 016981 207 ------AD--KVSFQVGDALQQ-PFPDGQFDLVWSMESGEHMPDK----SKFVSELARVTAPAGTIIIV 262 (379)
Q Consensus 207 ------~~--~i~~~~~d~~~~-~~~~~~fD~V~~~~~l~~~~~~----~~~l~~~~r~LkpgG~l~i~ 262 (379)
.. ++.+..+|+.+. +--...||+++.-. |.--.++ ..++++++++++|||.+.-.
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~-FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~ 205 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDG-FAPAKNPDMWSPNLFNALARLARPGATLATF 205 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCC-CCCccChhhccHHHHHHHHHHhCCCCEEEEe
Confidence 01 344566777553 21135699998643 3332333 78999999999999998743
No 277
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.57 E-value=0.017 Score=52.67 Aligned_cols=91 Identities=18% Similarity=0.178 Sum_probs=73.5
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccC
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~ 217 (379)
-++.+.++.+...+ +...+|.--|.|..+..+.+++ .++++|+|-++.+++.|++++...+ +++.++..++
T Consensus 10 VLl~E~i~~L~~~~-----~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F 82 (314)
T COG0275 10 VLLNEVVELLAPKP-----DGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNF 82 (314)
T ss_pred hHHHHHHHhcccCC-----CcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcH
Confidence 37778888877665 7999999999999999999998 3689999999999999999997754 6899999987
Q ss_pred CCCC-----CCCCcccEEEeccccC
Q 016981 218 LQQP-----FPDGQFDLVWSMESGE 237 (379)
Q Consensus 218 ~~~~-----~~~~~fD~V~~~~~l~ 237 (379)
.++. ...+.+|.|+.-..+.
T Consensus 83 ~~l~~~l~~~~i~~vDGiL~DLGVS 107 (314)
T COG0275 83 ANLAEALKELGIGKVDGILLDLGVS 107 (314)
T ss_pred HHHHHHHHhcCCCceeEEEEeccCC
Confidence 7642 2245788887655443
No 278
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.53 E-value=0.0053 Score=58.19 Aligned_cols=74 Identities=15% Similarity=0.153 Sum_probs=58.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCC-CCcccEEEe
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP-DGQFDLVWS 232 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~V~~ 232 (379)
...|||||+|||.++...++..+-.|++++.-..|.+.|++...++|+.++|.++.--.++.... ....|+++.
T Consensus 67 kv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~ 141 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVR 141 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhH
Confidence 45799999999999999888866689999999999999999999999999998876554444221 223565553
No 279
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.50 E-value=0.0051 Score=56.83 Aligned_cols=89 Identities=20% Similarity=0.195 Sum_probs=61.9
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
++.++++.+...+ +..++|.--|.|..+..+++.+ +++|+|+|-++.+++.|++++... .+++.++..++.+
T Consensus 8 ll~Evl~~L~~~~-----~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~ 80 (310)
T PF01795_consen 8 LLKEVLEALNPKP-----GGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSN 80 (310)
T ss_dssp THHHHHHHHT--T-----T-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGG
T ss_pred cHHHHHHhhCcCC-----CceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHH
Confidence 6677777776554 8899999999999999999887 689999999999999999877543 3688888888776
Q ss_pred CC-----C-CCCcccEEEecccc
Q 016981 220 QP-----F-PDGQFDLVWSMESG 236 (379)
Q Consensus 220 ~~-----~-~~~~fD~V~~~~~l 236 (379)
+. . ....+|.|++-..+
T Consensus 81 l~~~l~~~~~~~~~dgiL~DLGv 103 (310)
T PF01795_consen 81 LDEYLKELNGINKVDGILFDLGV 103 (310)
T ss_dssp HHHHHHHTTTTS-EEEEEEE-S-
T ss_pred HHHHHHHccCCCccCEEEEcccc
Confidence 42 2 23467877765433
No 280
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.27 E-value=0.024 Score=52.52 Aligned_cols=107 Identities=20% Similarity=0.311 Sum_probs=66.5
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC--CCCC-CCcccEEEe
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ--QPFP-DGQFDLVWS 232 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~-~~~fD~V~~ 232 (379)
.+.+|||+|.|.|.-+..+-.-+ -..++.++.|+..-+.......... +........|+.. ++++ ...|++|+.
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~-t~~td~r~s~vt~dRl~lp~ad~ytl~i~ 191 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVS-TEKTDWRASDVTEDRLSLPAADLYTLAIV 191 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcc-cccCCCCCCccchhccCCCccceeehhhh
Confidence 36789999999887665555444 2467778888866555544433222 1222233333322 2322 356777777
Q ss_pred ccccCCCCCH---HHHHHHHHHhcCCCCEEEEEecc
Q 016981 233 MESGEHMPDK---SKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 233 ~~~l~~~~~~---~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
.+-|-+..+. ...++.+..++.|||.|+|++..
T Consensus 192 ~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErG 227 (484)
T COG5459 192 LDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERG 227 (484)
T ss_pred hhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCC
Confidence 6666555433 45788899999999999999843
No 281
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=96.18 E-value=0.046 Score=52.82 Aligned_cols=103 Identities=20% Similarity=0.243 Sum_probs=68.6
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcc-CCC-C-CC-CCCcccEEE
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGD-ALQ-Q-PF-PDGQFDLVW 231 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d-~~~-~-~~-~~~~fD~V~ 231 (379)
++.+||.+|||. |..+..+++..+. +++++|.++...+.+++.. +. ..+.+...+ ... + .+ ....+|+|+
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~~~~~~D~vl 259 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALRELTGGRGPDVCI 259 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHHcCCCCCCEEE
Confidence 478999999988 8888899988875 6999999999988887642 11 111111111 100 1 11 223689887
Q ss_pred eccc---------------cCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 232 SMES---------------GEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 232 ~~~~---------------l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
-.-. +.-..+....+.++.+.|+|+|++++...
T Consensus 260 d~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 260 DAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred ECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 6421 11124556789999999999999988763
No 282
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.03 E-value=0.035 Score=51.94 Aligned_cols=100 Identities=17% Similarity=0.142 Sum_probs=79.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCC-CCCcccEEEecccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF-PDGQFDLVWSMESG 236 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fD~V~~~~~l 236 (379)
..+|||.=+|||.=++..+...+. +|+.-|+||.+++.+++++..+.. .+...+..|+..+-. ....||+|= +
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~-~~~~v~n~DAN~lm~~~~~~fd~ID----i 127 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG-EDAEVINKDANALLHELHRAFDVID----I 127 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc-ccceeecchHHHHHHhcCCCccEEe----c
Confidence 678999999999999888887754 899999999999999999988732 345555577665422 136788884 3
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.-+..+..++..+.+.++.||.|.++-
T Consensus 128 DPFGSPaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 128 DPFGSPAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred CCCCCCchHHHHHHHHhhcCCEEEEEe
Confidence 345567889999999999999999975
No 283
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=95.98 E-value=0.037 Score=49.06 Aligned_cols=91 Identities=26% Similarity=0.328 Sum_probs=51.8
Q ss_pred HHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHH---HHHHcCCC-----CCeEEEEc
Q 016981 144 ETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANA---LAAARGLA-----DKVSFQVG 215 (379)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~---~~~~~~~~-----~~i~~~~~ 215 (379)
.+++..++.. ....+|||.-+|-|.-+..++.. |++|++++-||.+....+. +....... .+++++.+
T Consensus 64 ~l~kA~Glk~---~~~~~VLDaTaGLG~Da~vlA~~-G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~ 139 (234)
T PF04445_consen 64 PLAKAVGLKP---GMRPSVLDATAGLGRDAFVLASL-GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHG 139 (234)
T ss_dssp HHHHHTT-BT---TB---EEETT-TTSHHHHHHHHH-T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES
T ss_pred HHHHHhCCCC---CCCCEEEECCCcchHHHHHHHcc-CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcC
Confidence 3445556554 11249999999999999999864 8899999999987655443 33322111 36899999
Q ss_pred cCCC-CCCCCCcccEEEeccccCC
Q 016981 216 DALQ-QPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 216 d~~~-~~~~~~~fD~V~~~~~l~~ 238 (379)
|..+ +..++.+||+|+.-=++.+
T Consensus 140 d~~~~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 140 DALEYLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp -CCCHCCCHSS--SEEEE--S---
T ss_pred CHHHHHhhcCCCCCEEEECCCCCC
Confidence 9877 3556789999998766655
No 284
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=95.91 E-value=0.14 Score=51.04 Aligned_cols=105 Identities=22% Similarity=0.297 Sum_probs=75.5
Q ss_pred CCEEEEeCCcccHHHHHHHHHcC-----CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCC-----CCCccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFG-----AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF-----PDGQFD 228 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~-----~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----~~~~fD 228 (379)
..+|+|..||+|.+.....+..+ ..++|.|+++.....|+-+.--.|+..++....+|...-|. ..+.||
T Consensus 187 ~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~D 266 (489)
T COG0286 187 RNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKFD 266 (489)
T ss_pred CCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCcccee
Confidence 66999999999998777766552 56999999999999999988777764334555555444332 236799
Q ss_pred EEEeccccC---CC---------------------CCH-HHHHHHHHHhcCCCCEEEEEe
Q 016981 229 LVWSMESGE---HM---------------------PDK-SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 229 ~V~~~~~l~---~~---------------------~~~-~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+|+++--+. +. ... ..++..+...|+|||+..++.
T Consensus 267 ~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl 326 (489)
T COG0286 267 FVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVL 326 (489)
T ss_pred EEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEe
Confidence 998764442 10 011 568999999999999766654
No 285
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.79 E-value=0.034 Score=48.54 Aligned_cols=83 Identities=13% Similarity=0.222 Sum_probs=56.8
Q ss_pred CCCCEEEEeCCcccHHHHHH-HHHcCCEEEEEeCCHHHHHHHHHHHHHc-CCCCCeEEEEccCCC-C-C---CCCCcccE
Q 016981 157 KRPKNVVDVGCGIGGSSRYL-AKKFGAKCQGITLSPVQAQRANALAAAR-GLADKVSFQVGDALQ-Q-P---FPDGQFDL 229 (379)
Q Consensus 157 ~~~~~vLDiGcGtG~~~~~l-~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~i~~~~~d~~~-~-~---~~~~~fD~ 229 (379)
.+..++||||.|.-..=-.+ ...+|.+.+|.|+++..++.|+..+..+ ++...+++....-.+ + + -..+.||+
T Consensus 77 ~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 77 GKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred cCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 45789999998865422111 2334889999999999999999998876 555556655432211 1 1 12578999
Q ss_pred EEeccccCCC
Q 016981 230 VWSMESGEHM 239 (379)
Q Consensus 230 V~~~~~l~~~ 239 (379)
++|+--+|..
T Consensus 157 tlCNPPFh~s 166 (292)
T COG3129 157 TLCNPPFHDS 166 (292)
T ss_pred EecCCCcchh
Confidence 9999877643
No 286
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.71 E-value=0.1 Score=49.43 Aligned_cols=97 Identities=24% Similarity=0.264 Sum_probs=61.8
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccc
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (379)
++.+||=.||| .|..+..+++..|+ +|+++|.++..++.+++. |...-+.....+..+.....+.+|+|+-.-
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l----Ga~~vi~~~~~~~~~~~~~~g~~D~vid~~- 243 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM----GADKLVNPQNDDLDHYKAEKGYFDVSFEVS- 243 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc----CCcEEecCCcccHHHHhccCCCCCEEEECC-
Confidence 37889988886 36677778877776 699999999988887652 321001111111111111123588887432
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 236 GEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
.. ...+..+.+.|++||++++...
T Consensus 244 ----G~-~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 244 ----GH-PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred ----CC-HHHHHHHHHHhhcCCEEEEEcc
Confidence 12 3467888899999999998874
No 287
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=95.60 E-value=0.013 Score=52.86 Aligned_cols=106 Identities=12% Similarity=0.112 Sum_probs=65.1
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHH-------HHHH--HcCCCCCeEEEEccCCCCCC-CCC--
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRAN-------ALAA--ARGLADKVSFQVGDALQQPF-PDG-- 225 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~-------~~~~--~~~~~~~i~~~~~d~~~~~~-~~~-- 225 (379)
.+++|||+|||.|...+.+.......+...|.+...++.-. ..+. ......-......+..+.-+ ..+
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~~ 195 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTERT 195 (282)
T ss_pred cCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhcccc
Confidence 38999999999999998888764478888888877763110 0000 00000001111110001110 113
Q ss_pred cccEEEeccccCCCCCHHHH-HHHHHHhcCCCCEEEEEe
Q 016981 226 QFDLVWSMESGEHMPDKSKF-VSELARVTAPAGTIIIVT 263 (379)
Q Consensus 226 ~fD~V~~~~~l~~~~~~~~~-l~~~~r~LkpgG~l~i~~ 263 (379)
.||+|.+..+++.......+ ......+++++|.++++.
T Consensus 196 ~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 196 HYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred chhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhhh
Confidence 79999999999888776666 666777888899877754
No 288
>PHA01634 hypothetical protein
Probab=95.55 E-value=0.087 Score=41.61 Aligned_cols=47 Identities=13% Similarity=0.074 Sum_probs=41.5
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR 204 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~ 204 (379)
.+.+|+|||.+.|..+++++-+....|+++++++...+..+++++..
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhh
Confidence 38899999999999999999885568999999999999998877654
No 289
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=95.50 E-value=0.11 Score=44.12 Aligned_cols=105 Identities=18% Similarity=0.264 Sum_probs=74.6
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---C--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-------CCCCc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---G--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-------FPDGQ 226 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~~ 226 (379)
+..|+|+|.-.|..+...|... | .+|+++|++-..+..+... . +++.|+.++..+.. ...+.
T Consensus 70 P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~-p~i~f~egss~dpai~eqi~~~~~~y 143 (237)
T COG3510 70 PSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----V-PDILFIEGSSTDPAIAEQIRRLKNEY 143 (237)
T ss_pred CceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----C-CCeEEEeCCCCCHHHHHHHHHHhcCC
Confidence 7899999999998877777643 4 6899999987765543322 2 58999999977642 22233
Q ss_pred ccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCC
Q 016981 227 FDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDL 269 (379)
Q Consensus 227 fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~ 269 (379)
--+.++-..-|+....-+.|+-..++|..|-++++.+...++.
T Consensus 144 ~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dl 186 (237)
T COG3510 144 PKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDL 186 (237)
T ss_pred CcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCC
Confidence 3444555666666555677777889999999999988655543
No 290
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=95.46 E-value=0.048 Score=49.42 Aligned_cols=105 Identities=18% Similarity=0.238 Sum_probs=77.3
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC--C-CCCeEEEEccCCCC--CCCCCcccEEEe
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG--L-ADKVSFQVGDALQQ--PFPDGQFDLVWS 232 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~--~~~~~~fD~V~~ 232 (379)
+++||-||.|-|.+.+..+++- -..+.-+|++...++..++.+...- . .+++.+..+|...+ ..+.++||+|+.
T Consensus 122 pkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii~ 201 (337)
T KOG1562|consen 122 PKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVIIT 201 (337)
T ss_pred CCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEEE
Confidence 7899999999999988877753 3478899999999888888766531 1 25788888886554 244689999986
Q ss_pred ccccCCCCC----HHHHHHHHHHhcCCCCEEEEEe
Q 016981 233 MESGEHMPD----KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 233 ~~~l~~~~~----~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
-..=--.+. ...++.-+.+.||+||++++..
T Consensus 202 dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 202 DSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred ecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 322111111 1567777899999999999876
No 291
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.42 E-value=0.17 Score=48.16 Aligned_cols=97 Identities=22% Similarity=0.221 Sum_probs=68.2
Q ss_pred CCEEEEeCCcc-cHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCC-C----C-CCCC-CcccE
Q 016981 159 PKNVVDVGCGI-GGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL-Q----Q-PFPD-GQFDL 229 (379)
Q Consensus 159 ~~~vLDiGcGt-G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~-~----~-~~~~-~~fD~ 229 (379)
+.+|+=+|||. |.++..+++..| .+|+.+|.++.-++.|++.... ........ + . .... ..+|+
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~-------~~~~~~~~~~~~~~~~~~t~g~g~D~ 241 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA-------DVVVNPSEDDAGAEILELTGGRGADV 241 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC-------eEeecCccccHHHHHHHHhCCCCCCE
Confidence 44999999996 888888888774 6899999999999999885421 11111111 1 0 1112 36999
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCC
Q 016981 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRD 268 (379)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~ 268 (379)
|+-.-. ....+..+.++++|||.+.+.......
T Consensus 242 vie~~G------~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 242 VIEAVG------SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred EEECCC------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 985433 255899999999999999998866444
No 292
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=95.38 E-value=0.043 Score=49.73 Aligned_cols=77 Identities=18% Similarity=0.354 Sum_probs=49.4
Q ss_pred CCEEEEeCCcccHHHHHHHHHcC---------CEEEEEeCCHHHHHHHHHHHHHc-----CCCCCeEEEEccCCCCCCCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFG---------AKCQGITLSPVQAQRANALAAAR-----GLADKVSFQVGDALQQPFPD 224 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~---------~~v~gvD~s~~~~~~a~~~~~~~-----~~~~~i~~~~~d~~~~~~~~ 224 (379)
+.+|+|+|.|+|.++..+++.+. .+++-||+|+.+.+..++++... ....++.+ ..+..+.|
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~~p--- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEEVP--- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGCS----
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhccc---
Confidence 47999999999999999887551 48999999999988888877542 12234555 23333333
Q ss_pred CcccEEEeccccCCCC
Q 016981 225 GQFDLVWSMESGEHMP 240 (379)
Q Consensus 225 ~~fD~V~~~~~l~~~~ 240 (379)
..-+|+++.++..+|
T Consensus 95 -~~~~iiaNE~~DAlP 109 (252)
T PF02636_consen 95 -FPGFIIANELFDALP 109 (252)
T ss_dssp -CCEEEEEESSGGGS-
T ss_pred -CCEEEEEeeehhcCc
Confidence 345566666665553
No 293
>PRK13699 putative methylase; Provisional
Probab=95.32 E-value=0.053 Score=48.29 Aligned_cols=52 Identities=17% Similarity=0.341 Sum_probs=33.5
Q ss_pred EEEEccCCCC--CCCCCcccEEEecc--cc--C-C----C--C---C-HHHHHHHHHHhcCCCCEEEEE
Q 016981 211 SFQVGDALQQ--PFPDGQFDLVWSME--SG--E-H----M--P---D-KSKFVSELARVTAPAGTIIIV 262 (379)
Q Consensus 211 ~~~~~d~~~~--~~~~~~fD~V~~~~--~l--~-~----~--~---~-~~~~l~~~~r~LkpgG~l~i~ 262 (379)
+++.+|..+. .++++++|+|++.= .+ . + + . + ....+.+++|+|||||.+++.
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 4566676553 46678888887651 11 0 0 0 0 1 157889999999999988763
No 294
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=95.22 E-value=0.1 Score=51.78 Aligned_cols=97 Identities=18% Similarity=0.283 Sum_probs=67.0
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC-----------C--C--
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-----------Q--P-- 221 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-----------~--~-- 221 (379)
++.+|+=+|+|. |..+..+++..|+.|+++|.++..++.+++. | ..++..|..+ . +
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~l----G----a~~v~v~~~e~g~~~~gYa~~~s~~~~ 234 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSM----G----AEFLELDFKEEGGSGDGYAKVMSEEFI 234 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----C----CeEEeccccccccccccceeecCHHHH
Confidence 478999999995 6777777887788999999999987776652 2 2233333211 0 0
Q ss_pred ------CC--CCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEE
Q 016981 222 ------FP--DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (379)
Q Consensus 222 ------~~--~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~ 262 (379)
+. -..+|+|+..-.+.--+.+.-+.++..+.+|||+.++-.
T Consensus 235 ~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDl 283 (511)
T TIGR00561 235 AAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDL 283 (511)
T ss_pred HHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEe
Confidence 11 245999987665555455555788889999999987643
No 295
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=95.15 E-value=0.35 Score=45.28 Aligned_cols=93 Identities=18% Similarity=0.313 Sum_probs=63.8
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC------CCCCCcccEE
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ------PFPDGQFDLV 230 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~~~~fD~V 230 (379)
++.+||..|+| .|..+..+++..|.+|++++.++...+.+++ .+. .....+-... ....+.+|+|
T Consensus 165 ~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~----~g~----~~~~~~~~~~~~~~~~~~~~~~~D~v 236 (338)
T cd08254 165 PGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE----LGA----DEVLNSLDDSPKDKKAAGLGGGFDVI 236 (338)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----hCC----CEEEcCCCcCHHHHHHHhcCCCceEE
Confidence 37889998876 4778888888888899999999998887754 232 1111111110 1234568988
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+.... ....+.++.+.|+++|.++....
T Consensus 237 id~~g------~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 237 FDFVG------TQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred EECCC------CHHHHHHHHHHhhcCCEEEEECC
Confidence 74321 14578889999999999988754
No 296
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.12 E-value=0.33 Score=44.83 Aligned_cols=100 Identities=16% Similarity=0.199 Sum_probs=67.9
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcc--CCCC------CCCCCcc
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGD--ALQQ------PFPDGQF 227 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d--~~~~------~~~~~~f 227 (379)
.+.+||=+|+|. |..+...++.+| .+|+.+|+++.-++.|++ + |. ..+...... ...+ .+....+
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---Ga-~~~~~~~~~~~~~~~~~~v~~~~g~~~~ 243 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---GA-TVTDPSSHKSSPQELAELVEKALGKKQP 243 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---CC-eEEeeccccccHHHHHHHHHhhccccCC
Confidence 489999999995 777777888774 589999999999999998 3 21 111111110 1110 1223458
Q ss_pred cEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCC
Q 016981 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRD 268 (379)
Q Consensus 228 D~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~ 268 (379)
|+.+-...+ +..++.....+|+||.+++..+....
T Consensus 244 d~~~dCsG~------~~~~~aai~a~r~gGt~vlvg~g~~~ 278 (354)
T KOG0024|consen 244 DVTFDCSGA------EVTIRAAIKATRSGGTVVLVGMGAEE 278 (354)
T ss_pred CeEEEccCc------hHHHHHHHHHhccCCEEEEeccCCCc
Confidence 888755433 34577778899999999998876543
No 297
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.04 E-value=0.025 Score=54.72 Aligned_cols=102 Identities=18% Similarity=0.195 Sum_probs=82.8
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC----CCCCCcccEEE
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF-G-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ----PFPDGQFDLVW 231 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~fD~V~ 231 (379)
++.+|||.=|++|.-++..++.. + ..|++.|.++..++..+++.+.+++.+.++....|+..+ +-....||+|-
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvID 188 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVID 188 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEe
Confidence 47899999999999998888877 3 479999999999999999998887766777777777553 22357899996
Q ss_pred eccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 232 SMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
. .-+..+..+|+.+.+.++.||.|.++-
T Consensus 189 L----DPyGs~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 189 L----DPYGSPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred c----CCCCCccHHHHHHHHHhhcCCEEEEEe
Confidence 3 334456889999999999999999975
No 298
>PRK11524 putative methyltransferase; Provisional
Probab=94.91 E-value=0.11 Score=47.86 Aligned_cols=58 Identities=12% Similarity=0.059 Sum_probs=47.3
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH
Q 016981 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAA 203 (379)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~ 203 (379)
..+++.++.... .+++.|||.=||+|..+....+. +-+.+|+|++++..+.|++|+..
T Consensus 195 ~~L~erlI~~~S------~~GD~VLDPF~GSGTT~~AA~~l-gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILASS------NPGDIVLDPFAGSFTTGAVAKAS-GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHHhC------CCCCEEEECCCCCcHHHHHHHHc-CCCEEEEeCCHHHHHHHHHHHHh
Confidence 346666666543 24999999999999988877665 88999999999999999999854
No 299
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=94.89 E-value=0.15 Score=44.93 Aligned_cols=102 Identities=15% Similarity=0.201 Sum_probs=67.2
Q ss_pred CCCCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC---CCCCcccEE
Q 016981 156 TKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLV 230 (379)
Q Consensus 156 ~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~V 230 (379)
.+++.+||-+|.++|....++.+-. ..-|++++.|+..-...-..+++. .|+--+.-|+.... ..-+..|+|
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR---tNiiPIiEDArhP~KYRmlVgmVDvI 230 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR---TNIIPIIEDARHPAKYRMLVGMVDVI 230 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc---CCceeeeccCCCchheeeeeeeEEEE
Confidence 3459999999999999988888866 357999999875433333222221 47777777775421 112356777
Q ss_pred EeccccCCCCCHH-HHHHHHHHhcCCCCEEEEEe
Q 016981 231 WSMESGEHMPDKS-KFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 231 ~~~~~l~~~~~~~-~~l~~~~r~LkpgG~l~i~~ 263 (379)
++- +- + +|.. -+.-++.-.||+||.++++-
T Consensus 231 FaD-va-q-pdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 231 FAD-VA-Q-PDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred ecc-CC-C-chhhhhhhhhhhhhhccCCeEEEEE
Confidence 642 11 1 3333 34456778899999999875
No 300
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=94.75 E-value=0.23 Score=46.65 Aligned_cols=60 Identities=18% Similarity=0.218 Sum_probs=45.2
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc---------CCEEEEEeCCHHHHHHHHHHHHHc
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF---------GAKCQGITLSPVQAQRANALAAAR 204 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~---------~~~v~gvD~s~~~~~~a~~~~~~~ 204 (379)
..+-++++.++.. .+..++|+|.|+|.++..+.+.. ..++.-|++|+...+.-+++++..
T Consensus 64 ~~~~~~wq~~g~p-----~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 64 EQFLQLWQELGRP-----APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHHHHHHHHhcCC-----CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 3344444444433 26789999999999998887654 368999999999998888887654
No 301
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=94.75 E-value=0.025 Score=51.32 Aligned_cols=102 Identities=19% Similarity=0.179 Sum_probs=74.0
Q ss_pred CCEEEEeCCcccHHHH-HHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGIGGSSR-YLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~-~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
+..|+|+=.|-|.++. .+.......|+++|.+|..++..++.++.+++..+.....+|-... -+....|.|.. .
T Consensus 195 ~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~-~~~~~AdrVnL----G 269 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNP-KPRLRADRVNL----G 269 (351)
T ss_pred cchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhcccccc-Cccccchheee----c
Confidence 6789999999999998 6666545689999999999999999999887766666677775443 34677888864 3
Q ss_pred CCCCHHHHHHHHHHhcCCCCE--EEEEecc
Q 016981 238 HMPDKSKFVSELARVTAPAGT--IIIVTWC 265 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~--l~i~~~~ 265 (379)
-+|.-++---.+.++|||.|- +=|.+..
T Consensus 270 LlPSse~~W~~A~k~Lk~eggsilHIHenV 299 (351)
T KOG1227|consen 270 LLPSSEQGWPTAIKALKPEGGSILHIHENV 299 (351)
T ss_pred cccccccchHHHHHHhhhcCCcEEEEeccc
Confidence 445545555556678888544 4444433
No 302
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=94.73 E-value=0.11 Score=48.84 Aligned_cols=42 Identities=38% Similarity=0.523 Sum_probs=36.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANAL 200 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~ 200 (379)
-..|+|+|.|.|.+++.+.-.+|..|.+||-|....+.|++.
T Consensus 154 i~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred CCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHHH
Confidence 467999999999999999988899999999998777776653
No 303
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=94.67 E-value=0.57 Score=44.08 Aligned_cols=108 Identities=16% Similarity=0.129 Sum_probs=73.0
Q ss_pred CCCCEEEEeCCcccHHHHHHHHHc-CC----EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC---------C
Q 016981 157 KRPKNVVDVGCGIGGSSRYLAKKF-GA----KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---------F 222 (379)
Q Consensus 157 ~~~~~vLDiGcGtG~~~~~l~~~~-~~----~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---------~ 222 (379)
.++.+|||+..-.|.=+..+.+.. .. .|++-|.++.-+........... .+++.+...|+...| .
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~-~~~~~v~~~~~~~~p~~~~~~~~~~ 232 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP-SPNLLVTNHDASLFPNIYLKDGNDK 232 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC-CcceeeecccceeccccccccCchh
Confidence 459999999999999887777765 22 79999999988777777664432 235555555544332 1
Q ss_pred CCCcccEEEec------cccCCCCCH-----------------HHHHHHHHHhcCCCCEEEEEecc
Q 016981 223 PDGQFDLVWSM------ESGEHMPDK-----------------SKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 223 ~~~~fD~V~~~------~~l~~~~~~-----------------~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
....||-|++- .++.+.++. ..+|.+..++||+||+++.++-+
T Consensus 233 ~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCS 298 (375)
T KOG2198|consen 233 EQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCS 298 (375)
T ss_pred hhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccC
Confidence 23468988752 122222221 35788899999999999998743
No 304
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.61 E-value=0.94 Score=41.62 Aligned_cols=173 Identities=13% Similarity=0.034 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCC----
Q 016981 134 HRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGL---- 206 (379)
Q Consensus 134 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~---- 206 (379)
+..+....+..++...+ ....|+.+|||.-.+...|...+ ...++=||.++........+. ....
T Consensus 70 R~~aI~~~v~~Fl~~~~-------~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~-~~~~s~~l 141 (335)
T KOG2918|consen 70 RTMAIRHAVRAFLEQTD-------GKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKR-KPELSSIL 141 (335)
T ss_pred HHHHHHHHHHHHHHhcC-------CceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcc-cCchhhhh
Confidence 33444555666666522 26789999999998888887765 246777777765554441110 0000
Q ss_pred -----------------CCCeEEEEccCCCCC----------CCCCcccEEEeccccCCCCCH--HHHHHHHHHhcCCCC
Q 016981 207 -----------------ADKVSFQVGDALQQP----------FPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAG 257 (379)
Q Consensus 207 -----------------~~~i~~~~~d~~~~~----------~~~~~fD~V~~~~~l~~~~~~--~~~l~~~~r~LkpgG 257 (379)
.++....-+|+.++. ...+-.-++++-.+|.+++.- ..+++.+......++
T Consensus 142 ~~~~~eD~~~~s~~~l~s~~Y~~~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~a~ 221 (335)
T KOG2918|consen 142 LGLHDEDVVDLSGTDLHSGRYHLIGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFENAH 221 (335)
T ss_pred hccccccccccCcceeccCceeeeccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCccc
Confidence 012222333333211 011223344445556666422 355666666555444
Q ss_pred EEEEEeccCCCCCCCccccchHHHHHHHH-HhhccCCCCCCCHHHHHHHHHhCCCceeEEEecC
Q 016981 258 TIIIVTWCHRDLAPSEESLQPWEQELLKK-ICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWS 320 (379)
Q Consensus 258 ~l~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 320 (379)
. ++.+...+ .+.+...+...+.. ..+..+...+.+.+..++-+.++||+.+.+.|+.
T Consensus 222 f-v~YEQi~~-----~D~Fg~vM~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm~ 279 (335)
T KOG2918|consen 222 F-VNYEQINP-----NDRFGKVMLANLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDMN 279 (335)
T ss_pred E-EEEeccCC-----CChHHHHHHHHHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhhHH
Confidence 4 44443221 12222222222221 1222233356799999999999999999886653
No 305
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.59 E-value=0.61 Score=43.27 Aligned_cols=174 Identities=17% Similarity=0.141 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC--CCCeEE
Q 016981 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL--ADKVSF 212 (379)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~i~~ 212 (379)
.....+.+++.+...-... -..|+-+|||--.-+.-+-...+.+|+-+|. |+.++.=++.++..+. +...++
T Consensus 74 ~a~Rtr~fD~~~~~~~~~g-----~~qvViLgaGLDTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~ 147 (297)
T COG3315 74 LAARTRYFDDFVRAALDAG-----IRQVVILGAGLDTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRL 147 (297)
T ss_pred HHHHHHHHHHHHHHHHHhc-----ccEEEEeccccccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEE
Confidence 4555666777666543221 4789999999654333332221467888888 5566666666666542 236889
Q ss_pred EEccCCCCC---------CCCCcccEEEeccccCCCCCH--HHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHH
Q 016981 213 QVGDALQQP---------FPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQ 281 (379)
Q Consensus 213 ~~~d~~~~~---------~~~~~fD~V~~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 281 (379)
+..|+.+.. |....--++++-+++.+++.. .++|+.|...+.||-.++.............. .....
T Consensus 148 Va~Dl~~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~--~~~~~ 225 (297)
T COG3315 148 VAVDLREDDWPQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLR--RPAAR 225 (297)
T ss_pred EeccccccchHHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhccc--chhhh
Confidence 999998432 234455678888999999644 78999999999888887775431111100000 00000
Q ss_pred HHHHHHhhccC-CC-CCCCHHHHHHHHHhCCCceeEE
Q 016981 282 ELLKKICDAYY-LP-AWCSTADYVKLLQSLSLEDIKA 316 (379)
Q Consensus 282 ~~~~~~~~~~~-~~-~~~~~~~~~~~l~~aGF~~v~~ 316 (379)
........... .. ......++..+|.+.||..+..
T Consensus 226 ~~~~~~~~~~~e~~~~~~~~~e~~~~l~~~g~~~~~~ 262 (297)
T COG3315 226 KTMRGEDLDRGELVYFGDDPAEIETWLAERGWRSTLN 262 (297)
T ss_pred hhccccccccccceeccCCHHHHHHHHHhcCEEEEec
Confidence 00000000001 11 1235899999999999987654
No 306
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=94.58 E-value=0.13 Score=45.32 Aligned_cols=54 Identities=20% Similarity=0.255 Sum_probs=40.5
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Q 016981 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANA 199 (379)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~ 199 (379)
..++++++.... +++..|||.=||+|..+.+..+. +-+.+|+|+++...+.|++
T Consensus 178 ~~l~~~lI~~~t------~~gdiVlDpF~GSGTT~~aa~~l-~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 178 VELIERLIKAST------NPGDIVLDPFAGSGTTAVAAEEL-GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHHS-------TT-EEEETT-TTTHHHHHHHHT-T-EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHhhh------ccceeeehhhhccChHHHHHHHc-CCeEEEEeCCHHHHHHhcC
Confidence 346666666543 24899999999999988887765 8899999999999998864
No 307
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=94.57 E-value=0.17 Score=40.29 Aligned_cols=86 Identities=22% Similarity=0.191 Sum_probs=60.6
Q ss_pred cccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-----C-CCCCcccEEEeccccCCCCC
Q 016981 168 GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----P-FPDGQFDLVWSMESGEHMPD 241 (379)
Q Consensus 168 GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~-~~~~~fD~V~~~~~l~~~~~ 241 (379)
|.|..+..+++..|.+|+++|.++.-++.+++. |. ..+...+-.+. . .+...+|+|+-.-.
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~----Ga---~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g------ 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKEL----GA---DHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG------ 67 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----TE---SEEEETTTSSHHHHHHHHTTTSSEEEEEESSS------
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh----cc---cccccccccccccccccccccccceEEEEecC------
Confidence 568899999998899999999999988888762 21 11222211111 1 23357999975422
Q ss_pred HHHHHHHHHHhcCCCCEEEEEeccC
Q 016981 242 KSKFVSELARVTAPAGTIIIVTWCH 266 (379)
Q Consensus 242 ~~~~l~~~~r~LkpgG~l~i~~~~~ 266 (379)
....++....+|+|||++++.....
T Consensus 68 ~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 68 SGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred cHHHHHHHHHHhccCCEEEEEEccC
Confidence 2678999999999999999988654
No 308
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.52 E-value=0.49 Score=36.91 Aligned_cols=84 Identities=24% Similarity=0.264 Sum_probs=56.1
Q ss_pred CcccHHHHHHHHHc--C-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC----CCCCcccEEEeccccCCC
Q 016981 167 CGIGGSSRYLAKKF--G-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVWSMESGEHM 239 (379)
Q Consensus 167 cGtG~~~~~l~~~~--~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~V~~~~~l~~~ 239 (379)
||.|.++..+++.+ + ..|+.+|.++...+.+++ ..+.++.+|..+.. ..-...|.|++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~--------~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~----- 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE--------EGVEVIYGDATDPEVLERAGIEKADAVVILT----- 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH--------TTSEEEES-TTSHHHHHHTTGGCESEEEEES-----
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh--------cccccccccchhhhHHhhcCccccCEEEEcc-----
Confidence 56778888887766 4 489999999999887765 24778999987742 2235677777642
Q ss_pred CCH--HHHHHHHHHhcCCCCEEEEEe
Q 016981 240 PDK--SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 240 ~~~--~~~l~~~~r~LkpgG~l~i~~ 263 (379)
++. ...+....+-+.|...++...
T Consensus 71 ~~d~~n~~~~~~~r~~~~~~~ii~~~ 96 (116)
T PF02254_consen 71 DDDEENLLIALLARELNPDIRIIARV 96 (116)
T ss_dssp SSHHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCeEEEEE
Confidence 233 234445667778888877654
No 309
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.50 E-value=0.05 Score=47.43 Aligned_cols=94 Identities=22% Similarity=0.300 Sum_probs=66.6
Q ss_pred CCEEEEeCCcccHHHHHHHHHc-C------C---EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-------
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF-G------A---KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------- 221 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~------~---~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------- 221 (379)
-.+++|+....|.|+..|.+++ . . .+++||+.+-+ . + +.+.-+++|++...
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-P----------I-~GV~qlq~DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-P----------I-EGVIQLQGDITSASTAEAIIE 109 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-c----------c-CceEEeecccCCHhHHHHHHH
Confidence 4689999999999999998876 2 1 29999996522 1 1 45777889988742
Q ss_pred -CCCCcccEEEecccc-----CCCCCH------HHHHHHHHHhcCCCCEEEEEec
Q 016981 222 -FPDGQFDLVWSMESG-----EHMPDK------SKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 222 -~~~~~fD~V~~~~~l-----~~~~~~------~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
|..++.|+|+|-+.- |.+.+. ..+|.-...+|||||.++---+
T Consensus 110 hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKif 164 (294)
T KOG1099|consen 110 HFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIF 164 (294)
T ss_pred HhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhh
Confidence 556689999986643 222221 2455566789999999876544
No 310
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=94.40 E-value=0.032 Score=42.72 Aligned_cols=32 Identities=31% Similarity=0.445 Sum_probs=26.9
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLS 190 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s 190 (379)
+....+|+|||+|.+...|... |..-.|+|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E-Gy~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE-GYPGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC-CCCccccccc
Confidence 4678999999999999888877 6777899873
No 311
>PRK13699 putative methylase; Provisional
Probab=94.33 E-value=0.23 Score=44.27 Aligned_cols=58 Identities=17% Similarity=0.123 Sum_probs=46.0
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR 204 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~ 204 (379)
.+++.++.... .++..|||.=||+|..+....+. +.+++|+|+++...+.+.+++...
T Consensus 151 ~l~~~~i~~~s------~~g~~vlDpf~Gsgtt~~aa~~~-~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 151 TSLQPLIESFT------HPNAIVLDPFAGSGSTCVAALQS-GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHHHHhC------CCCCEEEeCCCCCCHHHHHHHHc-CCCEEEEecCHHHHHHHHHHHHHH
Confidence 34555555432 24899999999999988877765 889999999999999999998754
No 312
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=94.12 E-value=0.81 Score=43.10 Aligned_cols=90 Identities=18% Similarity=0.147 Sum_probs=60.8
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecccc
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (379)
++.+||=.|+| .|..+..+++..|++|++++.++.-.+.+++ .|.. .. .|..+. ..+.+|+++.....
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~----~Ga~----~v-i~~~~~--~~~~~d~~i~~~~~ 233 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALA----LGAA----SA-GGAYDT--PPEPLDAAILFAPA 233 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH----hCCc----ee-cccccc--CcccceEEEECCCc
Confidence 48899999975 4556677787778899999999888777765 3321 11 111111 12457876643321
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
...+....+.|++||++++...
T Consensus 234 ------~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 234 ------GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred ------HHHHHHHHHhhCCCcEEEEEec
Confidence 2468888999999999988775
No 313
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=94.04 E-value=0.17 Score=45.57 Aligned_cols=92 Identities=24% Similarity=0.244 Sum_probs=61.5
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-------CCCCcccE
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-------FPDGQFDL 229 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~~fD~ 229 (379)
++.+||-.|+|+ |..+..+++..|.+|++++.++...+.+++. +. ..+. +..... ...+.+|+
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~---~~~~--~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL----GA---DHVI--DYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----CC---ceec--cCCcCCHHHHHHHhcCCCCCE
Confidence 488999999985 6677777777788999999998777766542 21 1111 111111 12356999
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
|+.... . ...+..+.+.|+++|.++....
T Consensus 205 vi~~~~-----~-~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 205 VIDAVG-----G-PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred EEECCC-----C-HHHHHHHHHhcccCCEEEEEcc
Confidence 985422 1 1467778899999999988764
No 314
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=94.03 E-value=0.87 Score=38.36 Aligned_cols=130 Identities=18% Similarity=0.138 Sum_probs=78.5
Q ss_pred eCCcccHHHHHHHHHc--CCEEEEEeC--CHHHHHH---HHHHHHHcCCCCCeE-EEEccCCCCC----CCCCcccEEEe
Q 016981 165 VGCGIGGSSRYLAKKF--GAKCQGITL--SPVQAQR---ANALAAARGLADKVS-FQVGDALQQP----FPDGQFDLVWS 232 (379)
Q Consensus 165 iGcGtG~~~~~l~~~~--~~~v~gvD~--s~~~~~~---a~~~~~~~~~~~~i~-~~~~d~~~~~----~~~~~fD~V~~ 232 (379)
||=|.=.++..|++.. +..++++-+ .....+. +..+++...- .++. ....|+.++. ...+.||.|+-
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~-~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRE-LGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhh-cCCccccCCCCCcccccccccCCcCCEEEE
Confidence 5666666788888876 345666544 3333332 2233333211 1222 3456777763 25688999997
Q ss_pred ccccCCCC----C-----------HHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCC
Q 016981 233 MESGEHMP----D-----------KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWC 297 (379)
Q Consensus 233 ~~~l~~~~----~-----------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (379)
++- |.. + ...+++.+.++|+++|.+.|+-..... +
T Consensus 82 NFP--H~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p-------y--------------------- 131 (166)
T PF10354_consen 82 NFP--HVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP-------Y--------------------- 131 (166)
T ss_pred eCC--CCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC-------C---------------------
Confidence 653 333 1 146788899999999999987532110 1
Q ss_pred CHHHHHHHHHhCCCceeEEEecCCCccc
Q 016981 298 STADYVKLLQSLSLEDIKAEDWSQNVAP 325 (379)
Q Consensus 298 ~~~~~~~~l~~aGF~~v~~~~~~~~~~~ 325 (379)
+.=.+.++-+++||..++...+.....|
T Consensus 132 ~~W~i~~lA~~~gl~l~~~~~F~~~~yp 159 (166)
T PF10354_consen 132 DSWNIEELAAEAGLVLVRKVPFDPSDYP 159 (166)
T ss_pred ccccHHHHHHhcCCEEEEEecCCHHHCC
Confidence 1113557788899999988877655444
No 315
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=93.99 E-value=0.013 Score=45.14 Aligned_cols=82 Identities=13% Similarity=0.267 Sum_probs=42.5
Q ss_pred cccEEEeccccCCCC----C--HHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCH
Q 016981 226 QFDLVWSMESGEHMP----D--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCST 299 (379)
Q Consensus 226 ~fD~V~~~~~l~~~~----~--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (379)
.||+|+|..+.-++. | ...+++.+++.|+|||.+++---..... .......+.....+.. .. +.+
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY-~~~~~~~~~~~~n~~~----i~----lrP 71 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSY-KKAKRLSEEIRENYKS----IK----LRP 71 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHH-HTTTTS-HHHHHHHHH------------G
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHH-HHHhhhhHHHHhHHhc----eE----ECh
Confidence 489999998876552 2 3689999999999999998853110000 0001111111111211 11 246
Q ss_pred HHHHHHHHh--CCCceeEE
Q 016981 300 ADYVKLLQS--LSLEDIKA 316 (379)
Q Consensus 300 ~~~~~~l~~--aGF~~v~~ 316 (379)
+.+...|.+ .||..++.
T Consensus 72 ~~F~~~L~~~evGF~~~e~ 90 (110)
T PF06859_consen 72 DQFEDYLLEPEVGFSSVEE 90 (110)
T ss_dssp GGHHHHHTSTTT---EEEE
T ss_pred HHHHHHHHhcccceEEEEE
Confidence 678888877 59987764
No 316
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=93.95 E-value=0.051 Score=43.39 Aligned_cols=76 Identities=24% Similarity=0.337 Sum_probs=49.3
Q ss_pred CeEEEEccCCCC-CCCCCcccEEEeccccCCCCCH----HHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHH
Q 016981 209 KVSFQVGDALQQ-PFPDGQFDLVWSMESGEHMPDK----SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQEL 283 (379)
Q Consensus 209 ~i~~~~~d~~~~-~~~~~~fD~V~~~~~l~~~~~~----~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~ 283 (379)
++.+..+|+.+. +--...||+|+.-. +..-.++ ..++++++++++|||.+.-..
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDg-FsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys-------------------- 90 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDG-FSPAKNPELWSEELFKKLARLSKPGGTLATYS-------------------- 90 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-S-S-TTTSGGGSSHHHHHHHHHHEEEEEEEEES---------------------
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecC-CCCcCCcccCCHHHHHHHHHHhCCCcEEEEee--------------------
Confidence 356667776542 22237799998653 3333444 789999999999999875522
Q ss_pred HHHHhhccCCCCCCCHHHHHHHHHhCCCceeEEEec
Q 016981 284 LKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDW 319 (379)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 319 (379)
....+++.|.++||++.....+
T Consensus 91 --------------~a~~Vr~~L~~aGF~v~~~~g~ 112 (124)
T PF05430_consen 91 --------------SAGAVRRALQQAGFEVEKVPGF 112 (124)
T ss_dssp ---------------BHHHHHHHHHCTEEEEEEE-S
T ss_pred --------------chHHHHHHHHHcCCEEEEcCCC
Confidence 2446889999999998777654
No 317
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=93.72 E-value=0.62 Score=45.25 Aligned_cols=101 Identities=15% Similarity=0.138 Sum_probs=65.7
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcc-cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
.++.+++..++. .++++|+=+|+|. |......++..|++|+.+|.++.-...|+. .| .... +..+
T Consensus 188 ~~~~i~r~t~~~----l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~----~G----~~~~--~~~e 253 (413)
T cd00401 188 LIDGIKRATDVM----IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM----EG----YEVM--TMEE 253 (413)
T ss_pred hHHHHHHhcCCC----CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh----cC----CEEc--cHHH
Confidence 456666654442 2489999999996 666666666668899999999887776654 22 2211 1111
Q ss_pred CCCCCCcccEEEeccccCCCCCHHHHHHH-HHHhcCCCCEEEEEec
Q 016981 220 QPFPDGQFDLVWSMESGEHMPDKSKFVSE-LARVTAPAGTIIIVTW 264 (379)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~~~~~~~l~~-~~r~LkpgG~l~i~~~ 264 (379)
. . ..+|+|+..- .. ..++.. ..+.+|+||.++....
T Consensus 254 ~-v--~~aDVVI~at-----G~-~~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 254 A-V--KEGDIFVTTT-----GN-KDIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred H-H--cCCCEEEECC-----CC-HHHHHHHHHhcCCCCcEEEEeCC
Confidence 1 1 3479988642 22 345554 4899999999988763
No 318
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=93.68 E-value=0.55 Score=44.69 Aligned_cols=93 Identities=19% Similarity=0.271 Sum_probs=60.7
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC----CCCCcccE
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITL---SPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDL 229 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~gvD~---s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~ 229 (379)
++.+||=+|+|. |.++..+++..|++|++++. ++.-.+.+++ .|. .++ +..+.. ...+.+|+
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~----~Ga----~~v--~~~~~~~~~~~~~~~~d~ 241 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEE----LGA----TYV--NSSKTPVAEVKLVGEFDL 241 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH----cCC----EEe--cCCccchhhhhhcCCCCE
Confidence 378999999874 66778888877889999986 5666666554 232 221 111111 01245888
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccC
Q 016981 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCH 266 (379)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 266 (379)
|+-.-. . ...+.+..+.|++||.+++.....
T Consensus 242 vid~~g-----~-~~~~~~~~~~l~~~G~~v~~G~~~ 272 (355)
T cd08230 242 IIEATG-----V-PPLAFEALPALAPNGVVILFGVPG 272 (355)
T ss_pred EEECcC-----C-HHHHHHHHHHccCCcEEEEEecCC
Confidence 875321 1 346788899999999998876543
No 319
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=93.59 E-value=0.49 Score=44.54 Aligned_cols=93 Identities=25% Similarity=0.312 Sum_probs=60.4
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcc---CCCCCCCCCcccEEEe
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGD---ALQQPFPDGQFDLVWS 232 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~~~~fD~V~~ 232 (379)
++.+||-.|||. |..+..+++..|. .+++++.++...+.+++. +. + .++..+ ........+.+|+|+.
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~----g~-~--~vi~~~~~~~~~~~~~~~~vd~vld 237 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM----GA-D--ETVNLARDPLAAYAADKGDFDVVFE 237 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CC-C--EEEcCCchhhhhhhccCCCccEEEE
Confidence 378899988875 6677778887777 799999998887765542 22 1 111111 1111111235899985
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.... ...++++.+.|+++|+++...
T Consensus 238 ~~g~------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 238 ASGA------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred CCCC------HHHHHHHHHHHhcCCEEEEEe
Confidence 4321 346788899999999988765
No 320
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=93.57 E-value=0.22 Score=45.78 Aligned_cols=67 Identities=21% Similarity=0.071 Sum_probs=49.4
Q ss_pred EEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCC--CCcccEEEecc
Q 016981 161 NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP--DGQFDLVWSME 234 (379)
Q Consensus 161 ~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~fD~V~~~~ 234 (379)
+|+|+-||.|.+...+.......+.++|+++.+++..+.++. +. +..+|+.++... ...+|+++...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~------~~-~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP------NK-LIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC------CC-CccCccccCchhhcCCCCCEEEeCC
Confidence 699999999999888877633357889999999998887652 12 566777766321 35699998654
No 321
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=93.54 E-value=0.055 Score=50.05 Aligned_cols=74 Identities=20% Similarity=0.176 Sum_probs=58.3
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHH-------HHHHHHHHcCCC-CCeEEEEccCCCCCCC-CCccc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQ-------RANALAAARGLA-DKVSFQVGDALQQPFP-DGQFD 228 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~-------~a~~~~~~~~~~-~~i~~~~~d~~~~~~~-~~~fD 228 (379)
+|+-|+|-=.|||.+....+. +|+-|+|.||+-.++. ..+.++++.|.. .-+.+..+|...-|+. ...||
T Consensus 208 pGdivyDPFVGTGslLvsaa~-FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~fD 286 (421)
T KOG2671|consen 208 PGDIVYDPFVGTGSLLVSAAH-FGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLKFD 286 (421)
T ss_pred CCCEEecCccccCceeeehhh-hcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcceee
Confidence 499999999999998887776 4999999999998887 345677777743 3467888898876643 45799
Q ss_pred EEEe
Q 016981 229 LVWS 232 (379)
Q Consensus 229 ~V~~ 232 (379)
.|+|
T Consensus 287 aIvc 290 (421)
T KOG2671|consen 287 AIVC 290 (421)
T ss_pred EEEe
Confidence 9987
No 322
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=93.21 E-value=2.6 Score=40.52 Aligned_cols=101 Identities=23% Similarity=0.291 Sum_probs=60.0
Q ss_pred CCCEEEEeCCcccH----HHHHHHHHcC----CEEEEEeC----CHHHHHHHHHHHH----HcCCCCCeEEEEc---cCC
Q 016981 158 RPKNVVDVGCGIGG----SSRYLAKKFG----AKCQGITL----SPVQAQRANALAA----ARGLADKVSFQVG---DAL 218 (379)
Q Consensus 158 ~~~~vLDiGcGtG~----~~~~l~~~~~----~~v~gvD~----s~~~~~~a~~~~~----~~~~~~~i~~~~~---d~~ 218 (379)
+..+|+|+|.|.|. +...|+.+-+ .++|||+. +...++.+.+++. ..|++ .+|... +.+
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~--fef~~v~~~~~e 187 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVP--FEFHPVVVESLE 187 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCcc--EEEEecccCchh
Confidence 36799999999996 3444555432 37999999 7778877776644 34553 455442 233
Q ss_pred CC-----CCCCCcccEEEeccccCCCCC-------H-HHHHHHHHHhcCCCCEEEE
Q 016981 219 QQ-----PFPDGQFDLVWSMESGEHMPD-------K-SKFVSELARVTAPAGTIII 261 (379)
Q Consensus 219 ~~-----~~~~~~fD~V~~~~~l~~~~~-------~-~~~l~~~~r~LkpgG~l~i 261 (379)
++ ...++..=+|-+...++|+.+ + ..+| ...+.|+|.-.+++
T Consensus 188 ~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L-~~ir~L~P~vvv~~ 242 (374)
T PF03514_consen 188 DLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFL-RVIRSLNPKVVVLV 242 (374)
T ss_pred hCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHH-HHHHhcCCCEEEEE
Confidence 32 122333334445566688852 2 3355 44557899955444
No 323
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=93.19 E-value=1.4 Score=38.39 Aligned_cols=99 Identities=20% Similarity=0.215 Sum_probs=62.8
Q ss_pred CCEEEEeCCccc----HHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCC-CCCCCCCcccEEEe
Q 016981 159 PKNVVDVGCGIG----GSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL-QQPFPDGQFDLVWS 232 (379)
Q Consensus 159 ~~~vLDiGcGtG----~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~-~~~~~~~~fD~V~~ 232 (379)
.+.++++.|+.| .++...|.+. |+++++|-+++..+...++.+...++.+.++|+.++.. ++-..-...|+++.
T Consensus 42 AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~vV 121 (218)
T PF07279_consen 42 AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFVVV 121 (218)
T ss_pred ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEEEE
Confidence 678899866543 2334444444 88999999998888888888887777666799998853 32111245888876
Q ss_pred ccccCCCCCHHHHHHHHHHh--cCCCCEEEEEe
Q 016981 233 MESGEHMPDKSKFVSELARV--TAPAGTIIIVT 263 (379)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~--LkpgG~l~i~~ 263 (379)
-.-. +.+.+++.+. +.|.|-+++..
T Consensus 122 Dc~~------~d~~~~vl~~~~~~~~GaVVV~~ 148 (218)
T PF07279_consen 122 DCKR------EDFAARVLRAAKLSPRGAVVVCY 148 (218)
T ss_pred eCCc------hhHHHHHHHHhccCCCceEEEEe
Confidence 4332 2233334443 44567766654
No 324
>PTZ00357 methyltransferase; Provisional
Probab=92.88 E-value=0.63 Score=47.25 Aligned_cols=98 Identities=15% Similarity=0.092 Sum_probs=67.9
Q ss_pred CEEEEeCCcccHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHH-HHcCC-------CCCeEEEEccCCCCCCC---
Q 016981 160 KNVVDVGCGIGGSSRYLAKKF-----GAKCQGITLSPVQAQRANALA-AARGL-------ADKVSFQVGDALQQPFP--- 223 (379)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~-----~~~v~gvD~s~~~~~~a~~~~-~~~~~-------~~~i~~~~~d~~~~~~~--- 223 (379)
..|+-+|+|-|-+.....+.. ..+|++|+-++........+. ....+ ...++++..|+..+..+
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 468999999998865544432 357999999976554444443 22233 23589999999887422
Q ss_pred --------CCcccEEEeccccCCCCCH---HHHHHHHHHhcCC----CCE
Q 016981 224 --------DGQFDLVWSMESGEHMPDK---SKFVSELARVTAP----AGT 258 (379)
Q Consensus 224 --------~~~fD~V~~~~~l~~~~~~---~~~l~~~~r~Lkp----gG~ 258 (379)
-+++|+|| +..|..+.|- .+.|..+.+.||+ +|.
T Consensus 782 ~s~~~P~~~gKaDIVV-SELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIV-SELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceeh-HhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 13699997 4667777554 6899999999987 775
No 325
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=92.84 E-value=1 Score=42.68 Aligned_cols=92 Identities=16% Similarity=0.159 Sum_probs=58.9
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHH-c-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecc
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKK-F-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~-~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~ 234 (379)
++.+||=+|||. |.++..++++ . +.+|+++|.++.-++.+++ + + .. ... + ++. ....+|+|+-.-
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~---~---~~-~~~-~--~~~-~~~g~d~viD~~ 230 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-A---D---ET-YLI-D--DIP-EDLAVDHAFECV 230 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-c---C---ce-eeh-h--hhh-hccCCcEEEECC
Confidence 488999999874 5566666765 3 4689999999988877764 1 1 11 111 1 111 112488887422
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
.. ......+....++|++||++++...
T Consensus 231 --G~-~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 231 --GG-RGSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred --CC-CccHHHHHHHHHhCcCCcEEEEEee
Confidence 11 0124578889999999999998775
No 326
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=92.71 E-value=0.41 Score=43.96 Aligned_cols=102 Identities=19% Similarity=0.177 Sum_probs=75.2
Q ss_pred CCCCEEEEeCCcc-cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccc
Q 016981 157 KRPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (379)
Q Consensus 157 ~~~~~vLDiGcGt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (379)
-++.+|.=||.|. |..+.-++-..|+.|+.+|+|..-+......+. .++...-.+...+...-...|+|+..-.
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~-----~rv~~~~st~~~iee~v~~aDlvIgaVL 240 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG-----GRVHTLYSTPSNIEEAVKKADLVIGAVL 240 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC-----ceeEEEEcCHHHHHHHhhhccEEEEEEE
Confidence 3467888898885 667777777669999999999988877666552 3455555554443222356899997766
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 236 GEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+.--..|.-+.+++.+.+|||+.++=.-
T Consensus 241 IpgakaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 241 IPGAKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred ecCCCCceehhHHHHHhcCCCcEEEEEE
Confidence 6666788889999999999999877544
No 327
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=92.63 E-value=0.42 Score=46.29 Aligned_cols=108 Identities=13% Similarity=0.098 Sum_probs=67.8
Q ss_pred CCCEEEEeCCcccH--HHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCC--CCCCC-CCcccEEE
Q 016981 158 RPKNVVDVGCGIGG--SSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL--QQPFP-DGQFDLVW 231 (379)
Q Consensus 158 ~~~~vLDiGcGtG~--~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~--~~~~~-~~~fD~V~ 231 (379)
.++.++|+|.|.|. ++.....+. ...++.||.|..|............-...+.....-+. .+|.. ...||+|+
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence 46788898877654 444444332 45799999999999998877654100001111110111 12433 35599999
Q ss_pred eccccCCCCCH---HHHHHH-HHHhcCCCCEEEEEecc
Q 016981 232 SMESGEHMPDK---SKFVSE-LARVTAPAGTIIIVTWC 265 (379)
Q Consensus 232 ~~~~l~~~~~~---~~~l~~-~~r~LkpgG~l~i~~~~ 265 (379)
+.+.++++.+. ..+.++ ..+..++||.+++.+-.
T Consensus 280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g 317 (491)
T KOG2539|consen 280 CAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKG 317 (491)
T ss_pred eeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecC
Confidence 99999999765 233333 45678899999998843
No 328
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=92.45 E-value=0.2 Score=46.10 Aligned_cols=107 Identities=19% Similarity=0.237 Sum_probs=71.5
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc---------------------CCEEEEEeCCHH--HHHHHHHHHHHc----------
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF---------------------GAKCQGITLSPV--QAQRANALAAAR---------- 204 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~---------------------~~~v~gvD~s~~--~~~~a~~~~~~~---------- 204 (379)
+..+||-||.|.|.=...++..+ ...++.||+.+- .++.....+...
T Consensus 86 ~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~ 165 (315)
T PF11312_consen 86 KSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAA 165 (315)
T ss_pred cCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccc
Confidence 45799999999987554444333 037999998763 333333332222
Q ss_pred ---CC-C--CCeEEEEccCCCCCCC-------CCcccEEEeccccCCC-----CCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 205 ---GL-A--DKVSFQVGDALQQPFP-------DGQFDLVWSMESGEHM-----PDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 205 ---~~-~--~~i~~~~~d~~~~~~~-------~~~fD~V~~~~~l~~~-----~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
.. + -++.|.+.|+..+..+ ....|+|...+++.-+ ....++|..+-..++||-.|+|+|-
T Consensus 166 ~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDS 243 (315)
T PF11312_consen 166 NWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDS 243 (315)
T ss_pred ccccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence 00 1 2578999998776432 1357888877776433 4457899999999999999999983
No 329
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=92.34 E-value=0.84 Score=42.53 Aligned_cols=87 Identities=20% Similarity=0.286 Sum_probs=57.4
Q ss_pred CCEEEEeCCc-ccHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecccc
Q 016981 159 PKNVVDVGCG-IGGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (379)
Q Consensus 159 ~~~vLDiGcG-tG~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (379)
+.+||=+||| .|.++..+++..|++ |+++|.++..++.|.+. . + .|..+. ....+|+|+-.-
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~------~--i~~~~~--~~~g~Dvvid~~-- 208 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E------V--LDPEKD--PRRDYRAIYDAS-- 208 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c------c--cChhhc--cCCCCCEEEECC--
Confidence 6778888876 477788888877776 66789888776655431 0 1 111111 124589887432
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
. . ...+..+.+.|++||++++....
T Consensus 209 G---~-~~~~~~~~~~l~~~G~iv~~G~~ 233 (308)
T TIGR01202 209 G---D-PSLIDTLVRRLAKGGEIVLAGFY 233 (308)
T ss_pred C---C-HHHHHHHHHhhhcCcEEEEEeec
Confidence 1 1 34678889999999999987753
No 330
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=91.87 E-value=0.97 Score=43.32 Aligned_cols=94 Identities=19% Similarity=0.174 Sum_probs=60.4
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-----CCCCCcccEE
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----PFPDGQFDLV 230 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~fD~V 230 (379)
++.+||=.|+|. |..+..+++..|+ +|+++|.++..++.+++ .|.. .++..+-.+. ....+.+|+|
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~---~~i~~~~~~~~~~i~~~~~~g~d~v 263 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE----LGAT---ATVNAGDPNAVEQVRELTGGGVDYA 263 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----cCCc---eEeCCCchhHHHHHHHHhCCCCCEE
Confidence 378888898763 6667777877777 69999999998888765 2321 1111111110 0112358888
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+-.- .. ...+....+.|++||++++...
T Consensus 264 id~~--G~----~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 264 FEMA--GS----VPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred EECC--CC----hHHHHHHHHHHhcCCEEEEEcc
Confidence 7431 11 3567788899999999988764
No 331
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=91.74 E-value=2.8 Score=39.82 Aligned_cols=97 Identities=13% Similarity=0.129 Sum_probs=62.4
Q ss_pred CCCEEEEeCC--cccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-cCCC-C-CCCCCcccEEEe
Q 016981 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVG-DALQ-Q-PFPDGQFDLVWS 232 (379)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~-~-~~~~~~fD~V~~ 232 (379)
++.+||=.|+ |.|..+..+++..|.+|++++.++...+.+++.+ |...-+..... +..+ . ....+.+|+|+-
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~l---Ga~~vi~~~~~~~~~~~i~~~~~~gvD~v~d 234 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKL---GFDEAFNYKEEPDLDAALKRYFPEGIDIYFD 234 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhc---CCCEEEECCCcccHHHHHHHHCCCCcEEEEE
Confidence 4889999987 4688888899888999999999988777665322 32111111100 1111 0 011245888874
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
.- . ...+..+.+.|++||++++...
T Consensus 235 ~v-----G--~~~~~~~~~~l~~~G~iv~~G~ 259 (348)
T PLN03154 235 NV-----G--GDMLDAALLNMKIHGRIAVCGM 259 (348)
T ss_pred CC-----C--HHHHHHHHHHhccCCEEEEECc
Confidence 32 1 2467888999999999988764
No 332
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=91.61 E-value=1.8 Score=39.62 Aligned_cols=96 Identities=18% Similarity=0.160 Sum_probs=59.8
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC-C-C-CCCCcccEEEe
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-Q-P-FPDGQFDLVWS 232 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~-~~~~~fD~V~~ 232 (379)
++.+||=+|+| .|..+..+++..|.+ |+++|.++.-++.+++. |.. ..+...+... . . .....+|+|+-
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~--~~i~~~~~~~~~~~~~~~~g~d~vid 193 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF----GAT--ALAEPEVLAERQGGLQNGRGVDVALE 193 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCc--EecCchhhHHHHHHHhCCCCCCEEEE
Confidence 37899999876 356667777777765 99999998877776652 221 1010001000 0 0 11235888874
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
.- .. ...++.+.+.|+|+|++++....
T Consensus 194 ~~-----G~-~~~~~~~~~~l~~~G~iv~~G~~ 220 (280)
T TIGR03366 194 FS-----GA-TAAVRACLESLDVGGTAVLAGSV 220 (280)
T ss_pred CC-----CC-hHHHHHHHHHhcCCCEEEEeccC
Confidence 21 11 45688889999999999987743
No 333
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=91.31 E-value=1.5 Score=41.83 Aligned_cols=97 Identities=21% Similarity=0.179 Sum_probs=60.5
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC-C--CCCCCcccEEEe
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-Q--PFPDGQFDLVWS 232 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~--~~~~~~fD~V~~ 232 (379)
++.+||=.|+|. |..+..+++..|. +|+++|.++...+.+++ .|...-+.....+..+ + ......+|+|+-
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid 251 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALTGGFGADVVID 251 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHhCCCCCCEEEE
Confidence 488999998763 6667778887777 59999999988888754 2321001111111100 0 012235898874
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
.- .. ...+....+.|++||++++...
T Consensus 252 ~~-----g~-~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 252 AV-----GR-PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CC-----CC-HHHHHHHHHHhccCCEEEEECC
Confidence 21 12 3467778899999999998764
No 334
>PRK11524 putative methyltransferase; Provisional
Probab=91.13 E-value=0.5 Score=43.60 Aligned_cols=54 Identities=24% Similarity=0.369 Sum_probs=37.7
Q ss_pred CeEEEEccCCCC--CCCCCcccEEEec--ccc--C---CCCC---------HHHHHHHHHHhcCCCCEEEEE
Q 016981 209 KVSFQVGDALQQ--PFPDGQFDLVWSM--ESG--E---HMPD---------KSKFVSELARVTAPAGTIIIV 262 (379)
Q Consensus 209 ~i~~~~~d~~~~--~~~~~~fD~V~~~--~~l--~---~~~~---------~~~~l~~~~r~LkpgG~l~i~ 262 (379)
+..++++|..+. .+++++||+|++. +.+ . .... ....+.++.++|||||.+++.
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 456788887764 4667899999984 211 0 0000 146889999999999999985
No 335
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=91.13 E-value=1.2 Score=42.00 Aligned_cols=97 Identities=22% Similarity=0.268 Sum_probs=59.4
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-C-CCCCcccEEEec
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-FPDGQFDLVWSM 233 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~~~~~fD~V~~~ 233 (379)
++.+||=+|+| .|..+..+++..|++ |+++|.++...+.+++. |...-+.....+.... . .....+|+|+-.
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~ 238 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL----GADFVINSGQDDVQEIRELTSGAGADVAIEC 238 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEEcCCcchHHHHHHHhCCCCCCEEEEC
Confidence 38899988875 355667777777777 99999999887777542 3210011110110011 1 122368988743
Q ss_pred cccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
.. . ...+....+.|+++|++++...
T Consensus 239 ~g-----~-~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 239 SG-----N-TAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred CC-----C-HHHHHHHHHHhhcCCEEEEEcC
Confidence 11 1 3456777899999999988764
No 336
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=91.03 E-value=2.1 Score=40.04 Aligned_cols=96 Identities=15% Similarity=0.136 Sum_probs=61.1
Q ss_pred CCCEEEEeCC--cccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-cCCC-C-CCCCCcccEEEe
Q 016981 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVG-DALQ-Q-PFPDGQFDLVWS 232 (379)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~-~-~~~~~~fD~V~~ 232 (379)
++.+||=.|. |.|..+..+++..|.+|++++.++...+.+++ .|...-+..... +... . ....+.+|+|+-
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d 213 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK----LGFDVAFNYKTVKSLEETLKKASPDGYDCYFD 213 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCCEEEeccccccHHHHHHHhCCCCeEEEEE
Confidence 3889998884 57888888998888899999999887777754 232100111110 1111 0 111245888874
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
. +. ...+....++|++||+++....
T Consensus 214 ~-----~G--~~~~~~~~~~l~~~G~iv~~G~ 238 (325)
T TIGR02825 214 N-----VG--GEFSNTVIGQMKKFGRIAICGA 238 (325)
T ss_pred C-----CC--HHHHHHHHHHhCcCcEEEEecc
Confidence 2 11 2346888999999999997653
No 337
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=90.74 E-value=1.2 Score=42.37 Aligned_cols=125 Identities=15% Similarity=0.149 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHH-------HHHcC
Q 016981 134 HRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANAL-------AAARG 205 (379)
Q Consensus 134 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~-------~~~~~ 205 (379)
+.+.+...+..+.+.+.+++ ++...|+|.|.|.+...++...+ ..-+|+++....-+.|..+ .+-.|
T Consensus 173 YGE~~~~ql~si~dEl~~g~-----~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fG 247 (419)
T KOG3924|consen 173 YGETQLEQLRSIVDELKLGP-----ADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFG 247 (419)
T ss_pred hhhhhHHHHHHHHHHhccCC-----CCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhC
Confidence 33444455666667777765 89999999999999998887653 3567777654433333221 12223
Q ss_pred C-CCCeEEEEccCCCCC---CCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 206 L-ADKVSFQVGDALQQP---FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 206 ~-~~~i~~~~~d~~~~~---~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
. +..++.+.+++.+-. .-....++|+++.+..- ++...-+.++..-+++|-+++-...
T Consensus 248 k~~~~~~~i~gsf~~~~~v~eI~~eatvi~vNN~~Fd-p~L~lr~~eil~~ck~gtrIiS~~~ 309 (419)
T KOG3924|consen 248 KKPNKIETIHGSFLDPKRVTEIQTEATVIFVNNVAFD-PELKLRSKEILQKCKDGTRIISSKP 309 (419)
T ss_pred CCcCceeecccccCCHHHHHHHhhcceEEEEecccCC-HHHHHhhHHHHhhCCCcceEecccc
Confidence 2 345777777765532 11245788887766543 3334445589999999999876653
No 338
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=90.66 E-value=2.6 Score=38.17 Aligned_cols=93 Identities=26% Similarity=0.359 Sum_probs=60.0
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccc
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (379)
++.+||-.|+|. |..+..+++..|.+ |++++.++...+.+++. |....+... .........+|+|+....
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~----g~~~~~~~~----~~~~~~~~~~d~vl~~~~ 168 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL----GPADPVAAD----TADEIGGRGADVVIEASG 168 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc----CCCcccccc----chhhhcCCCCCEEEEccC
Confidence 478898888865 66777777777777 99999999887766653 211111100 100112346898875321
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 236 GEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
....+....+.|+++|.++....
T Consensus 169 ------~~~~~~~~~~~l~~~g~~~~~g~ 191 (277)
T cd08255 169 ------SPSALETALRLLRDRGRVVLVGW 191 (277)
T ss_pred ------ChHHHHHHHHHhcCCcEEEEEec
Confidence 13467888999999999987653
No 339
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=90.41 E-value=3 Score=38.95 Aligned_cols=94 Identities=18% Similarity=0.112 Sum_probs=60.6
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC----CCCCCcccEEE
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ----PFPDGQFDLVW 231 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~fD~V~ 231 (379)
++.+||-+|+| .|..+..+++..|.+ +++++.++...+.+++ .+.. .++..+-... ....+.+|+|+
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~vd~v~ 231 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKK----LGAT---ETVDPSREDPEAQKEDNPYGFDVVI 231 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCe---EEecCCCCCHHHHHHhcCCCCcEEE
Confidence 47899999875 366667777777776 8999999888777643 2221 1221111110 11235689998
Q ss_pred eccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 232 SMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
.... ....+.++.+.|+++|+++....
T Consensus 232 ~~~~------~~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 232 EATG------VPKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred ECCC------ChHHHHHHHHHHhcCCEEEEEec
Confidence 5421 13578888999999999987664
No 340
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=90.11 E-value=3.4 Score=38.58 Aligned_cols=94 Identities=19% Similarity=0.191 Sum_probs=60.5
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-CCCCcccEEEeccc
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDLVWSMES 235 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~V~~~~~ 235 (379)
++.+||-+|+| .|..+..+++..|.+|++++.++...+.+++ . +. . .+....-.... -..+.+|+|+....
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~-~---g~--~-~~~~~~~~~~~~~~~~~~d~vi~~~~ 234 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARK-L---GA--D-EVVDSGAELDEQAAAGGADVILVTVV 234 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-h---CC--c-EEeccCCcchHHhccCCCCEEEECCC
Confidence 37889999987 6777777777778899999999988777643 1 21 1 11111100000 01245898875321
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 236 GEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
. ...+..+.+.|+++|.++....
T Consensus 235 -----~-~~~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 235 -----S-GAAAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred -----c-HHHHHHHHHhcccCCEEEEECC
Confidence 1 3467888999999999887753
No 341
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.02 E-value=6.7 Score=34.53 Aligned_cols=102 Identities=17% Similarity=0.115 Sum_probs=62.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----C-----CCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~ 225 (379)
+++||-.|++ |.++..+++.+ |.+|++++-++...+...+..... .++.++.+|+.+.. + .-+
T Consensus 5 ~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (238)
T PRK05786 5 GKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVLN 80 (238)
T ss_pred CcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 6789999986 44444444433 789999999887666554444332 25788888887532 0 013
Q ss_pred cccEEEeccccCCCC---C--------------HHHHHHHHHHhcCCCCEEEEEec
Q 016981 226 QFDLVWSMESGEHMP---D--------------KSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 226 ~fD~V~~~~~l~~~~---~--------------~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
..|.++......... + +..+++.+...++.+|.+++...
T Consensus 81 ~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 81 AIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred CCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 468777654332111 1 12345666677788888777653
No 342
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=89.67 E-value=2.3 Score=40.35 Aligned_cols=98 Identities=17% Similarity=0.243 Sum_probs=59.6
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-----CC-CCCccc--
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----PF-PDGQFD-- 228 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~-~~~~fD-- 228 (379)
++.+||=+|+|. |..+..+++..|.+|+++|.++..++.+++. |...-+.....+..++ .+ ....+|
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~----Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~ 241 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGF----GADLTLNPKDKSAREVKKLIKAFAKARGLRST 241 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----CCceEecCccccHHHHHHHHHhhcccCCCCCC
Confidence 488999999865 6677778887788999999999988877552 3210011111110000 00 112344
Q ss_pred --EEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 229 --LVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 229 --~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
+|+- .... ...+..+.++|++||++++....
T Consensus 242 ~d~v~d-----~~g~-~~~~~~~~~~l~~~G~iv~~G~~ 274 (349)
T TIGR03201 242 GWKIFE-----CSGS-KPGQESALSLLSHGGTLVVVGYT 274 (349)
T ss_pred cCEEEE-----CCCC-hHHHHHHHHHHhcCCeEEEECcC
Confidence 4441 2111 34677788899999999988754
No 343
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=89.63 E-value=2.8 Score=39.05 Aligned_cols=92 Identities=17% Similarity=0.146 Sum_probs=60.9
Q ss_pred CCCEEEEeC--CcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-----CCCCCcccEE
Q 016981 158 RPKNVVDVG--CGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----PFPDGQFDLV 230 (379)
Q Consensus 158 ~~~~vLDiG--cGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~fD~V 230 (379)
++.+||=.| .|.|..+..+++..|.+|++++.++...+.+++ .|. . .++...-.+. ....+.+|+|
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~----~Ga-~--~vi~~~~~~~~~~v~~~~~~gvd~v 215 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE----LGF-D--AVFNYKTVSLEEALKEAAPDGIDCY 215 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCC-C--EEEeCCCccHHHHHHHHCCCCcEEE
Confidence 378998887 456778888888888899999999887777765 232 1 1111111110 1112458888
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+-.- . ...+....+.|+++|+++...
T Consensus 216 ld~~--g-----~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 216 FDNV--G-----GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred EECC--C-----HHHHHHHHHhhccCCEEEEEc
Confidence 7431 1 245788899999999998765
No 344
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=89.57 E-value=3.4 Score=38.94 Aligned_cols=98 Identities=18% Similarity=0.238 Sum_probs=64.4
Q ss_pred CCCEEEEeC--CcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC---CCCCCcccEEEe
Q 016981 158 RPKNVVDVG--CGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ---PFPDGQFDLVWS 232 (379)
Q Consensus 158 ~~~~vLDiG--cGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~fD~V~~ 232 (379)
++.+||=.| .|.|.++..|++..|+.++++--+++-.+.+++ .|-..-+.+...|+.+. ......+|+|+-
T Consensus 142 ~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~----lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D 217 (326)
T COG0604 142 PGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKE----LGADHVINYREEDFVEQVRELTGGKGVDVVLD 217 (326)
T ss_pred CCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHh----cCCCEEEcCCcccHHHHHHHHcCCCCceEEEE
Confidence 389999998 456778999999987688888777766665544 33221233333332221 122346999985
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccC
Q 016981 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVTWCH 266 (379)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 266 (379)
.-. ...+.+..+.|+++|+++......
T Consensus 218 ~vG-------~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 218 TVG-------GDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred CCC-------HHHHHHHHHHhccCCEEEEEecCC
Confidence 322 566778899999999999987544
No 345
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=89.49 E-value=1.1 Score=43.13 Aligned_cols=101 Identities=17% Similarity=0.206 Sum_probs=56.9
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecccc
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (379)
++.+|+=+|+| .|..+...+...|++|+.+|.++..++.+...+ + ..+.....+...+.-.-..+|+|+..-..
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~---g--~~v~~~~~~~~~l~~~l~~aDvVI~a~~~ 240 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEF---G--GRIHTRYSNAYEIEDAVKRADLLIGAVLI 240 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhc---C--ceeEeccCCHHHHHHHHccCCEEEEcccc
Confidence 46779999988 466666667666889999999987665544332 1 11211111111111001358999865322
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.--+.+.-+-++..+.+|||+.++-..
T Consensus 241 ~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 241 PGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred CCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 111112212355667789998876654
No 346
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=89.11 E-value=2.6 Score=39.83 Aligned_cols=98 Identities=21% Similarity=0.231 Sum_probs=58.8
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC--CCCCCccc-EEEe
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDGQFD-LVWS 232 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD-~V~~ 232 (379)
++.+||=.|+|. |..+..+++..|.+ |++++.++...+.+++ .|...-+.....+...+ ......+| +|+-
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d 235 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS----LGAMQTFNSREMSAPQIQSVLRELRFDQLILE 235 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCceEecCcccCHHHHHHHhcCCCCCeEEEE
Confidence 478999998764 55677777777775 7899999988777654 22210011110010000 01223577 5542
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
.... ...+.+..+.|++||++++....
T Consensus 236 -----~~G~-~~~~~~~~~~l~~~G~iv~~G~~ 262 (347)
T PRK10309 236 -----TAGV-PQTVELAIEIAGPRAQLALVGTL 262 (347)
T ss_pred -----CCCC-HHHHHHHHHHhhcCCEEEEEccC
Confidence 1111 45788889999999999988644
No 347
>PLN02740 Alcohol dehydrogenase-like
Probab=88.98 E-value=2.7 Score=40.44 Aligned_cols=95 Identities=18% Similarity=0.255 Sum_probs=60.5
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcc-----CCC-C-CCCCCccc
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGD-----ALQ-Q-PFPDGQFD 228 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d-----~~~-~-~~~~~~fD 228 (379)
++.+||=+|+|. |..+..+++..|+ +|+++|.++..++.+++ .|.. .++... ..+ . ....+.+|
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~---~~i~~~~~~~~~~~~v~~~~~~g~d 270 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE----MGIT---DFINPKDSDKPVHERIREMTGGGVD 270 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH----cCCc---EEEecccccchHHHHHHHHhCCCCC
Confidence 488999999863 5667777777777 69999999988888765 2321 122111 100 0 01123589
Q ss_pred EEEeccccCCCCCHHHHHHHHHHhcCCC-CEEEEEecc
Q 016981 229 LVWSMESGEHMPDKSKFVSELARVTAPA-GTIIIVTWC 265 (379)
Q Consensus 229 ~V~~~~~l~~~~~~~~~l~~~~r~Lkpg-G~l~i~~~~ 265 (379)
+|+-.-. . ...+....+.+++| |++++....
T Consensus 271 vvid~~G-----~-~~~~~~a~~~~~~g~G~~v~~G~~ 302 (381)
T PLN02740 271 YSFECAG-----N-VEVLREAFLSTHDGWGLTVLLGIH 302 (381)
T ss_pred EEEECCC-----C-hHHHHHHHHhhhcCCCEEEEEccC
Confidence 8874321 1 35677888899997 998887643
No 348
>PRK07576 short chain dehydrogenase; Provisional
Probab=88.98 E-value=4.5 Score=36.58 Aligned_cols=73 Identities=27% Similarity=0.211 Sum_probs=47.2
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----C-----CCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~ 225 (379)
+.++|-.|. +|.++..+++.+ |.+|+.++.++..++...+.+...+ .++.++.+|+.+.. + ..+
T Consensus 9 ~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~~~ 85 (264)
T PRK07576 9 GKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADEFG 85 (264)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 678888885 445555554443 7899999998877665555444332 35678888887531 1 124
Q ss_pred cccEEEecc
Q 016981 226 QFDLVWSME 234 (379)
Q Consensus 226 ~fD~V~~~~ 234 (379)
.+|+++.+.
T Consensus 86 ~iD~vi~~a 94 (264)
T PRK07576 86 PIDVLVSGA 94 (264)
T ss_pred CCCEEEECC
Confidence 579998654
No 349
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=88.86 E-value=2.6 Score=38.21 Aligned_cols=102 Identities=18% Similarity=0.161 Sum_probs=68.9
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCC---CCcccEEEec
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP---DGQFDLVWSM 233 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~fD~V~~~ 233 (379)
.++.|+-+| ---..+++++-.. ..+|..+|++...+...++.++..|+ +|+..+.-|+.+ |+| .+.||+.+.
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~-~~ie~~~~Dlr~-plpe~~~~kFDvfiT- 227 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY-NNIEAFVFDLRN-PLPEDLKRKFDVFIT- 227 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc-cchhheeehhcc-cChHHHHhhCCeeec-
Confidence 477899998 4444455544433 67999999999999999999999887 578888888765 333 368998873
Q ss_pred cccCCCCCHHHHHHHHHHhcCCC---CEEEEEe
Q 016981 234 ESGEHMPDKSKFVSELARVTAPA---GTIIIVT 263 (379)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r~Lkpg---G~l~i~~ 263 (379)
.--+.+.....++..=...||-- |++.++.
T Consensus 228 DPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~ 260 (354)
T COG1568 228 DPPETIKALKLFLGRGIATLKGEGCAGYFGITR 260 (354)
T ss_pred CchhhHHHHHHHHhccHHHhcCCCccceEeeee
Confidence 22222222344555555667765 6666643
No 350
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.83 E-value=6.9 Score=35.97 Aligned_cols=79 Identities=16% Similarity=0.050 Sum_probs=59.7
Q ss_pred CCCCEEEEeCCcccH---HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC----------CC
Q 016981 157 KRPKNVVDVGCGIGG---SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FP 223 (379)
Q Consensus 157 ~~~~~vLDiGcGtG~---~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~ 223 (379)
-.+..||==|.|.|. .+..++++ +++++..|++..-.+...+.++..| ++..+.+|+.+.. -.
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~r-g~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~e 111 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKR-GAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKKE 111 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHh-CCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHHh
Confidence 457889998988875 45666666 7899999999988888888777664 6888999987632 12
Q ss_pred CCcccEEEeccccCCC
Q 016981 224 DGQFDLVWSMESGEHM 239 (379)
Q Consensus 224 ~~~fD~V~~~~~l~~~ 239 (379)
-+..|+++.+-.+.+.
T Consensus 112 ~G~V~ILVNNAGI~~~ 127 (300)
T KOG1201|consen 112 VGDVDILVNNAGIVTG 127 (300)
T ss_pred cCCceEEEeccccccC
Confidence 4679999988766544
No 351
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=88.71 E-value=4 Score=39.57 Aligned_cols=88 Identities=17% Similarity=0.170 Sum_probs=56.5
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecccc
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (379)
.+++|+=+|+|. |......++.+|++|+++|.++.....+.. .| ..+ .+.++. . ...|+|+..-
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~----~G----~~v--~~leea-l--~~aDVVItaT-- 258 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAM----DG----FRV--MTMEEA-A--KIGDIFITAT-- 258 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHh----cC----CEe--CCHHHH-H--hcCCEEEECC--
Confidence 488999999996 655666666668999999998865433332 12 222 222221 1 3469887632
Q ss_pred CCCCCHHHHHH-HHHHhcCCCCEEEEEec
Q 016981 237 EHMPDKSKFVS-ELARVTAPAGTIIIVTW 264 (379)
Q Consensus 237 ~~~~~~~~~l~-~~~r~LkpgG~l~i~~~ 264 (379)
....++. +....+|+|++++....
T Consensus 259 ----G~~~vI~~~~~~~mK~GailiN~G~ 283 (406)
T TIGR00936 259 ----GNKDVIRGEHFENMKDGAIVANIGH 283 (406)
T ss_pred ----CCHHHHHHHHHhcCCCCcEEEEECC
Confidence 1244554 48889999999988763
No 352
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=88.69 E-value=0.53 Score=45.20 Aligned_cols=59 Identities=20% Similarity=0.288 Sum_probs=50.1
Q ss_pred CCeEEEEccCCCC--CCCCCcccEEEeccccCCCCCH--HHHHHHHHHhcCCCCEEEEEeccC
Q 016981 208 DKVSFQVGDALQQ--PFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCH 266 (379)
Q Consensus 208 ~~i~~~~~d~~~~--~~~~~~fD~V~~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~i~~~~~ 266 (379)
++++++.+++.+. ..+++++|.++....+.++++. .+.++++.+.++|||++++=....
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~ 337 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAV 337 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCC
Confidence 7899999998774 3568999999999999999654 788999999999999999976543
No 353
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=88.56 E-value=2.5 Score=40.41 Aligned_cols=95 Identities=23% Similarity=0.254 Sum_probs=56.3
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE-ccCCCCCCCCCcccEEEeccc
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV-GDALQQPFPDGQFDLVWSMES 235 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~fD~V~~~~~ 235 (379)
++.+||=.|+| .|..+..+++..|.++++++.++.....+.+ ..|.. .++. .+........+.+|+|+-.-.
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~---~~Ga~---~vi~~~~~~~~~~~~~~~D~vid~~g 256 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAIN---RLGAD---SFLVSTDPEKMKAAIGTMDYIIDTVS 256 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHH---hCCCc---EEEcCCCHHHHHhhcCCCCEEEECCC
Confidence 37888889886 3667778888778899999887654332211 12321 1111 110111000124788874321
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 236 GEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
. ...+.+..+.|++||+++....
T Consensus 257 -----~-~~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 257 -----A-VHALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred -----C-HHHHHHHHHHhcCCcEEEEeCC
Confidence 1 3467888999999999988764
No 354
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=88.44 E-value=0.31 Score=46.53 Aligned_cols=61 Identities=23% Similarity=0.182 Sum_probs=52.6
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCC-eEEEEccCCC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADK-VSFQVGDALQ 219 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~-i~~~~~d~~~ 219 (379)
++..|-|+-||.|-++..++.+ +++|++-|++++++++.+.+++.+.+.+. +..+..|+.+
T Consensus 249 ~gevv~D~FaGvGPfa~Pa~kK-~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~ 310 (495)
T KOG2078|consen 249 PGEVVCDVFAGVGPFALPAAKK-GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKD 310 (495)
T ss_pred CcchhhhhhcCcCccccchhhc-CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHH
Confidence 4889999999999999999988 79999999999999999999887766554 7777777643
No 355
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=88.36 E-value=6 Score=37.08 Aligned_cols=97 Identities=21% Similarity=0.229 Sum_probs=61.5
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC-C--CCCCCcccEEEec
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-Q--PFPDGQFDLVWSM 233 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~--~~~~~~fD~V~~~ 233 (379)
++.+||-.|+|. |..+..+++..|.+|+++..+++..+.+++. +...-+.....+... + ..+...+|+|+..
T Consensus 159 ~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~----g~~~v~~~~~~~~~~~l~~~~~~~~vd~vld~ 234 (337)
T cd08261 159 AGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFAREL----GADDTINVGDEDVAARLRELTDGEGADVVIDA 234 (337)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHh----CCCEEecCcccCHHHHHHHHhCCCCCCEEEEC
Confidence 478999998764 7778888887789999998888887776442 211001111111000 1 0123458999854
Q ss_pred cccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
.. ....+.++.+.|+++|.++....
T Consensus 235 ~g------~~~~~~~~~~~l~~~G~~i~~g~ 259 (337)
T cd08261 235 TG------NPASMEEAVELVAHGGRVVLVGL 259 (337)
T ss_pred CC------CHHHHHHHHHHHhcCCEEEEEcC
Confidence 21 13567888999999999887653
No 356
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.26 E-value=5.7 Score=36.90 Aligned_cols=98 Identities=23% Similarity=0.216 Sum_probs=59.0
Q ss_pred CCCEEEEeC-CcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEE-EccCCC-C-CCCCCcccEEEec
Q 016981 158 RPKNVVDVG-CGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQ-VGDALQ-Q-PFPDGQFDLVWSM 233 (379)
Q Consensus 158 ~~~~vLDiG-cGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~-~~d~~~-~-~~~~~~fD~V~~~ 233 (379)
|+++|-=+| +|-|.++..+++.+|.+|+++|-+..--+.|-+++ |-..-+.+. ..|... . ..-++-.|.|...
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~L---GAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~ 257 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSL---GADVFVDSTEDPDIMKAIMKTTDGGIDTVSNL 257 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhc---CcceeEEecCCHHHHHHHHHhhcCcceeeeec
Confidence 488777766 45799999999999999999999975555544433 311111111 111100 0 0112333444322
Q ss_pred cccCCCCCHHHHHHHHHHhcCCCCEEEEEeccC
Q 016981 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTWCH 266 (379)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 266 (379)
- ...+..+.+.||++|.+++.....
T Consensus 258 --a------~~~~~~~~~~lk~~Gt~V~vg~p~ 282 (360)
T KOG0023|consen 258 --A------EHALEPLLGLLKVNGTLVLVGLPE 282 (360)
T ss_pred --c------ccchHHHHHHhhcCCEEEEEeCcC
Confidence 1 334777889999999999987543
No 357
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=88.03 E-value=5.3 Score=37.53 Aligned_cols=92 Identities=13% Similarity=0.123 Sum_probs=59.3
Q ss_pred CCEEEEeCC--cccHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-----CCCCCcccEE
Q 016981 159 PKNVVDVGC--GIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----PFPDGQFDLV 230 (379)
Q Consensus 159 ~~~vLDiGc--GtG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~fD~V 230 (379)
+.+||=.|+ |.|..+..+++..|. +|++++.++...+.+++.+ |.. . ++..+-.++ ....+.+|+|
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~l---Ga~-~--vi~~~~~~~~~~i~~~~~~gvd~v 228 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSEL---GFD-A--AINYKTDNVAERLRELCPEGVDVY 228 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhc---CCc-E--EEECCCCCHHHHHHHHCCCCceEE
Confidence 378988885 577888888888887 7999999988777665532 321 1 111111111 0112468988
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+-.- .. ..+.++.+.|+++|+++...
T Consensus 229 id~~-----g~--~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 229 FDNV-----GG--EISDTVISQMNENSHIILCG 254 (345)
T ss_pred EECC-----Cc--HHHHHHHHHhccCCEEEEEe
Confidence 7421 12 23578889999999998765
No 358
>PRK07326 short chain dehydrogenase; Provisional
Probab=87.97 E-value=6.7 Score=34.50 Aligned_cols=74 Identities=16% Similarity=0.083 Sum_probs=48.0
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----CC-----CC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----DG 225 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~~ 225 (379)
+.+||=.|. +|.++..+++.+ |.+|++++.++.......+.+... .++.++.+|+.+.. +. -+
T Consensus 6 ~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (237)
T PRK07326 6 GKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAFG 81 (237)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 578888884 666666665544 789999998887665554444322 35788888886531 10 13
Q ss_pred cccEEEecccc
Q 016981 226 QFDLVWSMESG 236 (379)
Q Consensus 226 ~fD~V~~~~~l 236 (379)
.+|.|+.....
T Consensus 82 ~~d~vi~~ag~ 92 (237)
T PRK07326 82 GLDVLIANAGV 92 (237)
T ss_pred CCCEEEECCCC
Confidence 68988876543
No 359
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=87.93 E-value=7 Score=36.73 Aligned_cols=97 Identities=15% Similarity=0.144 Sum_probs=62.4
Q ss_pred CCCEEEEeCC--cccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-cCCC-C-CCCCCcccEEEe
Q 016981 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVG-DALQ-Q-PFPDGQFDLVWS 232 (379)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~-~-~~~~~~fD~V~~ 232 (379)
++.+||=.|+ |.|..+..+++..|.+|++++.++...+.+++.+ |...-+..... +..+ + ....+.+|+|+-
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~l---Ga~~vi~~~~~~~~~~~i~~~~~~gvd~v~d 227 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKL---GFDDAFNYKEEPDLDAALKRYFPNGIDIYFD 227 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCceeEEcCCcccHHHHHHHhCCCCcEEEEE
Confidence 4889999886 5677888888888999999999988777766532 32111111111 1111 0 111246888874
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
. +. ...+.++.+.|+++|+++....
T Consensus 228 ~-----~g--~~~~~~~~~~l~~~G~iv~~G~ 252 (338)
T cd08295 228 N-----VG--GKMLDAVLLNMNLHGRIAACGM 252 (338)
T ss_pred C-----CC--HHHHHHHHHHhccCcEEEEecc
Confidence 3 11 2567888999999999987653
No 360
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=87.88 E-value=1.6 Score=39.36 Aligned_cols=105 Identities=22% Similarity=0.239 Sum_probs=59.1
Q ss_pred CCEEEEeCCcccHHHHHHHHH---c---CCEEEEEeCCH--------------------------HHHHHHHHHHHHcCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKK---F---GAKCQGITLSP--------------------------VQAQRANALAAARGL 206 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~---~---~~~v~gvD~s~--------------------------~~~~~a~~~~~~~~~ 206 (379)
+..|+|+||-.|..+..++.. + +.++++.|.=. ...+..++++.+.|+
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl 154 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL 154 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence 678999999999876655432 2 34688888411 123444555544443
Q ss_pred -CCCeEEEEccCCCC-C-CCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 207 -ADKVSFQVGDALQQ-P-FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 207 -~~~i~~~~~d~~~~-~-~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
.+++.++.+.+.+. | .+.+.+-++..-. ........+|..++..|.|||.+++-++.
T Consensus 155 ~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~--DlYesT~~aLe~lyprl~~GGiIi~DDY~ 214 (248)
T PF05711_consen 155 LDDNVRFVKGWFPDTLPDAPIERIALLHLDC--DLYESTKDALEFLYPRLSPGGIIIFDDYG 214 (248)
T ss_dssp SSTTEEEEES-HHHHCCC-TT--EEEEEE-----SHHHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred CcccEEEECCcchhhhccCCCccEEEEEEec--cchHHHHHHHHHHHhhcCCCeEEEEeCCC
Confidence 35899999998653 3 2233333332221 11122378899999999999999997754
No 361
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=87.58 E-value=6.7 Score=36.91 Aligned_cols=97 Identities=23% Similarity=0.301 Sum_probs=60.4
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccC----CCC--CCCCCcccE
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDA----LQQ--PFPDGQFDL 229 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~----~~~--~~~~~~fD~ 229 (379)
++.+||-.|+|. |..+..+++..|.+ |++++-++...+.+++. +...-+.....+. ..+ ......+|+
T Consensus 162 ~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~~~~~~~~~~~~~~d~ 237 (343)
T cd05285 162 PGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GATHTVNVRTEDTPESAEKIAELLGGKGPDV 237 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCcEEeccccccchhHHHHHHHHhCCCCCCE
Confidence 478888888765 66777788877877 89999888877776542 2210011111110 000 122345899
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
|+-.... ...+....+.|+++|+++....
T Consensus 238 vld~~g~------~~~~~~~~~~l~~~G~~v~~g~ 266 (343)
T cd05285 238 VIECTGA------ESCIQTAIYATRPGGTVVLVGM 266 (343)
T ss_pred EEECCCC------HHHHHHHHHHhhcCCEEEEEcc
Confidence 9854221 2367888999999999887653
No 362
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=87.50 E-value=6.5 Score=36.89 Aligned_cols=96 Identities=22% Similarity=0.257 Sum_probs=58.5
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC-C--CCCCCcccEEEe
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-Q--PFPDGQFDLVWS 232 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~--~~~~~~fD~V~~ 232 (379)
++.+||-.|+| .|..+..+++..|. .+++++.++...+.+++. +...-+.....+..+ + -.+.+.+|+|+-
T Consensus 167 ~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~i~~~~~~~~~d~vld 242 (347)
T cd05278 167 PGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----GATDIINPKNGDIVEQILELTGGRGVDCVIE 242 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----CCcEEEcCCcchHHHHHHHHcCCCCCcEEEE
Confidence 47888888775 46677778887774 899998888776665542 211001111111100 0 012356898875
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
... ....+.+..+.|+++|+++...
T Consensus 243 ~~g------~~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 243 AVG------FEETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred ccC------CHHHHHHHHHHhhcCCEEEEEc
Confidence 321 1257888899999999988765
No 363
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=87.47 E-value=10 Score=36.18 Aligned_cols=98 Identities=20% Similarity=0.186 Sum_probs=60.6
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE--ccCCC-C-CCCCCcccEEE
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQV--GDALQ-Q-PFPDGQFDLVW 231 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~--~d~~~-~-~~~~~~fD~V~ 231 (379)
++.+||=+|+|. |..+..+++..|+ +|+++|.++..++.+++. |...-+.... .+... . ....+.+|+|+
T Consensus 185 ~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~----Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~vi 260 (368)
T TIGR02818 185 EGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL----GATDCVNPNDYDKPIQEVIVEITDGGVDYSF 260 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCCeEEcccccchhHHHHHHHHhCCCCCEEE
Confidence 388999999863 6677778887777 799999999988887552 3211011110 00000 0 01123588887
Q ss_pred eccccCCCCCHHHHHHHHHHhcCCC-CEEEEEecc
Q 016981 232 SMESGEHMPDKSKFVSELARVTAPA-GTIIIVTWC 265 (379)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~r~Lkpg-G~l~i~~~~ 265 (379)
-.- .. ...+.+..+.+++| |++++....
T Consensus 261 d~~-----G~-~~~~~~~~~~~~~~~G~~v~~g~~ 289 (368)
T TIGR02818 261 ECI-----GN-VNVMRAALECCHKGWGESIIIGVA 289 (368)
T ss_pred ECC-----CC-HHHHHHHHHHhhcCCCeEEEEecc
Confidence 431 11 34677888899986 998887653
No 364
>PLN02827 Alcohol dehydrogenase-like
Probab=87.40 E-value=2.6 Score=40.54 Aligned_cols=97 Identities=22% Similarity=0.242 Sum_probs=58.5
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc--cCCC-C-CCCCCcccEEE
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVG--DALQ-Q-PFPDGQFDLVW 231 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~--d~~~-~-~~~~~~fD~V~ 231 (379)
++.+||-.|+|. |..+..+++..|. .|+++|.++...+.+++ .|...-+..... +... + ....+.+|+|+
T Consensus 193 ~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~----lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vi 268 (378)
T PLN02827 193 KGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT----FGVTDFINPNDLSEPIQQVIKRMTGGGADYSF 268 (378)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCcEEEcccccchHHHHHHHHHhCCCCCEEE
Confidence 488999998763 5566777777676 58899999988777754 232100111100 1100 0 01123588887
Q ss_pred eccccCCCCCHHHHHHHHHHhcCCC-CEEEEEec
Q 016981 232 SMESGEHMPDKSKFVSELARVTAPA-GTIIIVTW 264 (379)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~r~Lkpg-G~l~i~~~ 264 (379)
-.- . . ...+....+.|++| |++++...
T Consensus 269 d~~--G---~-~~~~~~~l~~l~~g~G~iv~~G~ 296 (378)
T PLN02827 269 ECV--G---D-TGIATTALQSCSDGWGLTVTLGV 296 (378)
T ss_pred ECC--C---C-hHHHHHHHHhhccCCCEEEEECC
Confidence 432 1 1 34577888899999 99988664
No 365
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=86.57 E-value=1.9 Score=40.58 Aligned_cols=94 Identities=18% Similarity=0.180 Sum_probs=59.7
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcc---CCCC-C-CCCCcccEE
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGD---ALQQ-P-FPDGQFDLV 230 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d---~~~~-~-~~~~~fD~V 230 (379)
++.+||-.|+|. |..+..+++..|.. +++++-++...+.+++ .+. ..++..+ ...+ . .....+|+|
T Consensus 159 ~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~----~g~---~~~~~~~~~~~~~~~~~~~~~~~d~v 231 (343)
T cd08236 159 LGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARE----LGA---DDTINPKEEDVEKVRELTEGRGADLV 231 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCC---CEEecCccccHHHHHHHhCCCCCCEE
Confidence 478899998765 66777778777776 9999988877776643 222 1111111 0111 1 122348999
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+... .....+..+.+.|+++|+++....
T Consensus 232 ld~~------g~~~~~~~~~~~l~~~G~~v~~g~ 259 (343)
T cd08236 232 IEAA------GSPATIEQALALARPGGKVVLVGI 259 (343)
T ss_pred EECC------CCHHHHHHHHHHhhcCCEEEEEcc
Confidence 8541 114567888999999999887653
No 366
>PRK07806 short chain dehydrogenase; Provisional
Probab=86.55 E-value=12 Score=33.25 Aligned_cols=102 Identities=19% Similarity=0.153 Sum_probs=58.5
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCH-HHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----CC-----C
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSP-VQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----D 224 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~ 224 (379)
++++|-.|++. .++..+++.+ |.+|++++-+. ...+.....++..+ .++.++.+|+.+.. +. -
T Consensus 6 ~k~vlItGasg-giG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK07806 6 GKTALVTGSSR-GIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTAREEF 82 (248)
T ss_pred CcEEEEECCCC-cHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 67899888644 4455555443 77898887653 23333333333322 36778888987632 10 1
Q ss_pred CcccEEEeccccCCCC-------------CHHHHHHHHHHhcCCCCEEEEEe
Q 016981 225 GQFDLVWSMESGEHMP-------------DKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 225 ~~fD~V~~~~~l~~~~-------------~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+..|+|+.+....... -...+++.+.+.++.+|++++..
T Consensus 83 ~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 83 GGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred CCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence 3578877654332110 12356777777777677766654
No 367
>PLN02494 adenosylhomocysteinase
Probab=86.45 E-value=3.6 Score=40.56 Aligned_cols=102 Identities=16% Similarity=0.143 Sum_probs=61.6
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEeCCcc-cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~vLDiGcGt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
.++-+++..+.. ..+++|+=+|+|. |......++.+|++|+++|.++.....+.. .| ..+. +..+
T Consensus 240 ~~d~i~r~t~i~----LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~----~G----~~vv--~leE 305 (477)
T PLN02494 240 LPDGLMRATDVM----IAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALM----EG----YQVL--TLED 305 (477)
T ss_pred HHHHHHHhcCCc----cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHh----cC----Ceec--cHHH
Confidence 455555554432 2489999999995 554455555558899999999865433322 12 2211 2222
Q ss_pred CCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 220 QPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
. . ...|+|+....-. .-+..+....+|+||.|+.+..
T Consensus 306 a-l--~~ADVVI~tTGt~-----~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 306 V-V--SEADIFVTTTGNK-----DIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred H-H--hhCCEEEECCCCc-----cchHHHHHhcCCCCCEEEEcCC
Confidence 1 1 3479998632222 2234778889999999998764
No 368
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=86.27 E-value=2 Score=43.11 Aligned_cols=90 Identities=17% Similarity=0.230 Sum_probs=58.4
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC----C----CCCCcc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ----P----FPDGQF 227 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~----~~~~~f 227 (379)
++..|||+||..|.|....++.. +.-|+|+|+-|.- ..+++.-.+.|++.. + ...-..
T Consensus 44 ~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik------------p~~~c~t~v~dIttd~cr~~l~k~l~t~~a 111 (780)
T KOG1098|consen 44 KAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK------------PIPNCDTLVEDITTDECRSKLRKILKTWKA 111 (780)
T ss_pred ccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc------------cCCccchhhhhhhHHHHHHHHHHHHHhCCC
Confidence 47889999999999999988877 6789999997632 224565566666432 1 122345
Q ss_pred cEEEeccccCCCC-CH-----------HHHHHHHHHhcCCCCEEE
Q 016981 228 DLVWSMESGEHMP-DK-----------SKFVSELARVTAPAGTII 260 (379)
Q Consensus 228 D~V~~~~~l~~~~-~~-----------~~~l~~~~r~LkpgG~l~ 260 (379)
|+|+.-+. +.+. .+ -..|+-+...|+-||.++
T Consensus 112 dvVLhDga-pnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fv 155 (780)
T KOG1098|consen 112 DVVLHDGA-PNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFV 155 (780)
T ss_pred cEEeecCC-CccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccc
Confidence 77764332 2221 11 235556677889999943
No 369
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=85.86 E-value=10 Score=35.10 Aligned_cols=90 Identities=18% Similarity=0.174 Sum_probs=58.5
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecccc
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (379)
++.+||=.|+| .|..+..+++..|.++++++.++...+.+++ .|.. .+ .+..+. ...+.+|+|+-..
T Consensus 155 ~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~----~g~~-~~----~~~~~~-~~~~~~d~vid~~-- 222 (319)
T cd08242 155 PGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR----LGVE-TV----LPDEAE-SEGGGFDVVVEAT-- 222 (319)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----cCCc-EE----eCcccc-ccCCCCCEEEECC--
Confidence 37888888764 2445555666668899999999988887775 2321 11 111111 2345689988531
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.. ...+..+.+.|+++|.+++..
T Consensus 223 ---g~-~~~~~~~~~~l~~~g~~v~~~ 245 (319)
T cd08242 223 ---GS-PSGLELALRLVRPRGTVVLKS 245 (319)
T ss_pred ---CC-hHHHHHHHHHhhcCCEEEEEc
Confidence 11 446778889999999998743
No 370
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=85.86 E-value=6.9 Score=37.37 Aligned_cols=98 Identities=23% Similarity=0.239 Sum_probs=60.4
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc--cCCC-C-CCCCCcccEEE
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVG--DALQ-Q-PFPDGQFDLVW 231 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~--d~~~-~-~~~~~~fD~V~ 231 (379)
++.+||=+|+| .|..+..+++..|. .|+++|.++..++.+++ .|...-+..... +..+ . ....+.+|+|+
T Consensus 186 ~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vi 261 (368)
T cd08300 186 PGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK----FGATDCVNPKDHDKPIQQVLVEMTDGGVDYTF 261 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCCEEEcccccchHHHHHHHHHhCCCCcEEE
Confidence 48899998875 35566777777787 79999999998887754 232100111110 0100 0 01123689887
Q ss_pred eccccCCCCCHHHHHHHHHHhcCCC-CEEEEEecc
Q 016981 232 SMESGEHMPDKSKFVSELARVTAPA-GTIIIVTWC 265 (379)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~r~Lkpg-G~l~i~~~~ 265 (379)
-. ... ...+....+.|+++ |++++....
T Consensus 262 d~--~g~----~~~~~~a~~~l~~~~G~~v~~g~~ 290 (368)
T cd08300 262 EC--IGN----VKVMRAALEACHKGWGTSVIIGVA 290 (368)
T ss_pred EC--CCC----hHHHHHHHHhhccCCCeEEEEccC
Confidence 43 111 35678888999997 999887643
No 371
>PRK08324 short chain dehydrogenase; Validated
Probab=85.78 E-value=8.9 Score=40.13 Aligned_cols=102 Identities=22% Similarity=0.185 Sum_probs=62.9
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----CC-----C
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----D 224 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~ 224 (379)
++++||=.|++. .++..+++.+ |.+|+.+|.++..++.+.+.+... .++.++.+|+.+.. +. .
T Consensus 421 ~gk~vLVTGasg-gIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~ 496 (681)
T PRK08324 421 AGKVALVTGAAG-GIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAF 496 (681)
T ss_pred CCCEEEEecCCC-HHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 357888887643 3444444333 789999999987776655544322 36788888886632 11 2
Q ss_pred CcccEEEeccccCCCCC-------------------HHHHHHHHHHhcCC---CCEEEEEe
Q 016981 225 GQFDLVWSMESGEHMPD-------------------KSKFVSELARVTAP---AGTIIIVT 263 (379)
Q Consensus 225 ~~fD~V~~~~~l~~~~~-------------------~~~~l~~~~r~Lkp---gG~l~i~~ 263 (379)
+.+|+|+.+-....... ...+++.+.+.++. ||.+++..
T Consensus 497 g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 497 GGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 46899987665432211 23456666777766 67777765
No 372
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=85.74 E-value=8.8 Score=39.50 Aligned_cols=89 Identities=13% Similarity=0.086 Sum_probs=57.1
Q ss_pred CEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC----CCCCcccEEEe
Q 016981 160 KNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVWS 232 (379)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~V~~ 232 (379)
.+|+=+|+ |.++..+++.. +..++.+|.+++.++.+++ .....+.+|+.+.. ..-+..|.+++
T Consensus 401 ~~vII~G~--Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~--------~g~~v~~GDat~~~~L~~agi~~A~~vv~ 470 (601)
T PRK03659 401 PQVIIVGF--GRFGQVIGRLLMANKMRITVLERDISAVNLMRK--------YGYKVYYGDATQLELLRAAGAEKAEAIVI 470 (601)
T ss_pred CCEEEecC--chHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh--------CCCeEEEeeCCCHHHHHhcCCccCCEEEE
Confidence 45655554 55655555543 6799999999999988765 24667889988742 12346777765
Q ss_pred ccccCCCCCHH--HHHHHHHHhcCCCCEEEEEe
Q 016981 233 MESGEHMPDKS--KFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 233 ~~~l~~~~~~~--~~l~~~~r~LkpgG~l~i~~ 263 (379)
. .+|.. ..+-...|.+.|...++.-.
T Consensus 471 ~-----~~d~~~n~~i~~~~r~~~p~~~IiaRa 498 (601)
T PRK03659 471 T-----CNEPEDTMKIVELCQQHFPHLHILARA 498 (601)
T ss_pred E-----eCCHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 3 23332 23444566678888877654
No 373
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=85.63 E-value=1.5 Score=42.97 Aligned_cols=109 Identities=17% Similarity=0.169 Sum_probs=73.8
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-------CCCCCcccE
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-------PFPDGQFDL 229 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-------~~~~~~fD~ 229 (379)
.+..+|-+|-|.|.+...+...+ ...+++++++|.|++.|++.+....- .+..+...|..+. .-.+..||+
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhccccccCCcE
Confidence 36789999999999999988877 47999999999999999988643221 1233333343221 013567998
Q ss_pred EEecc-c--cCCCCCH------HHHHHHHHHhcCCCCEEEEEeccCC
Q 016981 230 VWSME-S--GEHMPDK------SKFVSELARVTAPAGTIIIVTWCHR 267 (379)
Q Consensus 230 V~~~~-~--l~~~~~~------~~~l~~~~r~LkpgG~l~i~~~~~~ 267 (379)
+..-- . .+-+.-+ ..+|..+...|.|-|.+++--.+.+
T Consensus 374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~ 420 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRN 420 (482)
T ss_pred EEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCC
Confidence 87421 0 2222111 5688889999999999988665443
No 374
>PRK08265 short chain dehydrogenase; Provisional
Probab=85.41 E-value=9.5 Score=34.31 Aligned_cols=72 Identities=14% Similarity=0.198 Sum_probs=45.4
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----CC-----CC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----DG 225 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~~ 225 (379)
++++|=.|++. .++..+++.+ |.+|+.+|.++..++...+.. ..++.++.+|+.+.. +. -+
T Consensus 6 ~k~vlItGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 79 (261)
T PRK08265 6 GKVAIVTGGAT-LIGAAVARALVAAGARVAIVDIDADNGAAVAASL-----GERARFIATDITDDAAIERAVATVVARFG 79 (261)
T ss_pred CCEEEEECCCC-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCeeEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 56888888654 4455544443 789999999876554443322 236788889987642 10 14
Q ss_pred cccEEEecccc
Q 016981 226 QFDLVWSMESG 236 (379)
Q Consensus 226 ~fD~V~~~~~l 236 (379)
..|+++.+...
T Consensus 80 ~id~lv~~ag~ 90 (261)
T PRK08265 80 RVDILVNLACT 90 (261)
T ss_pred CCCEEEECCCC
Confidence 68988876543
No 375
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=85.41 E-value=11 Score=36.64 Aligned_cols=99 Identities=16% Similarity=0.119 Sum_probs=59.5
Q ss_pred CCCEEEEeC-Cc-ccHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC---C-----C-CC
Q 016981 158 RPKNVVDVG-CG-IGGSSRYLAKKFGA---KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ---Q-----P-FP 223 (379)
Q Consensus 158 ~~~~vLDiG-cG-tG~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~---~-----~-~~ 223 (379)
++.+||=+| +| .|..+..+++..|. +|+++|.++..++.+++................|..+ . . ..
T Consensus 175 ~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t~ 254 (410)
T cd08238 175 PGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMELTG 254 (410)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHHhC
Confidence 478899887 34 67788888887542 7999999999999887742110000011111112111 0 0 12
Q ss_pred CCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEE
Q 016981 224 DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (379)
Q Consensus 224 ~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~ 262 (379)
...+|+|+.... . ...+....+.++++|.+++.
T Consensus 255 g~g~D~vid~~g-----~-~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 255 GQGFDDVFVFVP-----V-PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred CCCCCEEEEcCC-----C-HHHHHHHHHHhccCCeEEEE
Confidence 235888875321 1 45778889999999876654
No 376
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=85.23 E-value=5.3 Score=38.42 Aligned_cols=94 Identities=19% Similarity=0.249 Sum_probs=56.5
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCCEEEEEeCCHHH-HHHHHHHHHHcCCCCCeEEEE-ccCCCCCCCCCcccEEEecc
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQ-AQRANALAAARGLADKVSFQV-GDALQQPFPDGQFDLVWSME 234 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~gvD~s~~~-~~~a~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~fD~V~~~~ 234 (379)
++.+||=.|+| .|..+..+++..|++|++++.++.. .+.+++ .|.. .++. .+.....-..+.+|+|+-.-
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~----lGa~---~~i~~~~~~~v~~~~~~~D~vid~~ 250 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDR----LGAD---SFLVTTDSQKMKEAVGTMDFIIDTV 250 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHh----CCCc---EEEcCcCHHHHHHhhCCCcEEEECC
Confidence 47889888876 3667777888778899999987643 334332 3321 1111 01011100012478887431
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
.. ...+..+.+.|++||+++....
T Consensus 251 -----G~-~~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 251 -----SA-EHALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred -----Cc-HHHHHHHHHhhcCCCEEEEEcc
Confidence 11 3467888899999999988764
No 377
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=85.17 E-value=15 Score=35.50 Aligned_cols=101 Identities=19% Similarity=0.194 Sum_probs=60.6
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc---cCCC-C-C-CCCCcccE
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVG---DALQ-Q-P-FPDGQFDL 229 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~---d~~~-~-~-~~~~~fD~ 229 (379)
++.+||=.|+| .|..+..+++..|.+ ++.+|.++.-++.+++. |. . .+... +..+ + . .....+|+
T Consensus 185 ~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~----Ga--~-~v~~~~~~~~~~~v~~~~~~~g~Dv 257 (393)
T TIGR02819 185 PGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF----GC--E-TVDLSKDATLPEQIEQILGEPEVDC 257 (393)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc----CC--e-EEecCCcccHHHHHHHHcCCCCCcE
Confidence 37788778876 366667777776765 56678888777777662 32 1 11111 1101 0 0 12235898
Q ss_pred EEeccccCC--------CCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 230 VWSMESGEH--------MPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 230 V~~~~~l~~--------~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
|+-.-.-.. ..+....+++..+++++||++++....
T Consensus 258 vid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 258 AVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred EEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence 874322110 012235789999999999999998764
No 378
>PRK06181 short chain dehydrogenase; Provisional
Probab=85.16 E-value=9.6 Score=34.16 Aligned_cols=74 Identities=19% Similarity=0.143 Sum_probs=47.1
Q ss_pred CEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----C-----CCCc
Q 016981 160 KNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDGQ 226 (379)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~~ 226 (379)
.+||-.|+ +|.++..+++.+ |.+|++++.++...+...+.+...+ .++.+..+|+.+.. + .-+.
T Consensus 2 ~~vlVtGa-sg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 78 (263)
T PRK06181 2 KVVIITGA-SEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHG--GEALVVPTDVSDAEACERLIEAAVARFGG 78 (263)
T ss_pred CEEEEecC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 35776664 455555555443 7899999998876665555554433 46888888987632 0 0135
Q ss_pred ccEEEecccc
Q 016981 227 FDLVWSMESG 236 (379)
Q Consensus 227 fD~V~~~~~l 236 (379)
.|+|+.+...
T Consensus 79 id~vi~~ag~ 88 (263)
T PRK06181 79 IDILVNNAGI 88 (263)
T ss_pred CCEEEECCCc
Confidence 7998876544
No 379
>PRK05854 short chain dehydrogenase; Provisional
Probab=85.11 E-value=17 Score=33.79 Aligned_cols=77 Identities=18% Similarity=0.074 Sum_probs=49.9
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC----------CCCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPDG 225 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~ 225 (379)
++++|=.|++.|. +..+++.+ |.+|+.++-+....+.+.+.+.......++.++.+|+.+.. -..+
T Consensus 14 gk~~lITGas~GI-G~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~~ 92 (313)
T PRK05854 14 GKRAVVTGASDGL-GLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEGR 92 (313)
T ss_pred CCEEEEeCCCChH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 6788888876654 44444333 78999999888766666555543321236888899987642 1125
Q ss_pred cccEEEecccc
Q 016981 226 QFDLVWSMESG 236 (379)
Q Consensus 226 ~fD~V~~~~~l 236 (379)
..|+++.+-..
T Consensus 93 ~iD~li~nAG~ 103 (313)
T PRK05854 93 PIHLLINNAGV 103 (313)
T ss_pred CccEEEECCcc
Confidence 68999876544
No 380
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=84.98 E-value=9.8 Score=37.19 Aligned_cols=88 Identities=16% Similarity=0.157 Sum_probs=55.6
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecccc
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (379)
.+.+|+=+|+|. |......++..|.+|+.+|.++.....+.. .| ..+ .++.+. -...|+|+..-
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~----~G----~~v--~~l~ea---l~~aDVVI~aT-- 275 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAM----DG----FRV--MTMEEA---AELGDIFVTAT-- 275 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHh----cC----CEe--cCHHHH---HhCCCEEEECC--
Confidence 388999999985 444444455558899999999865443322 12 111 122221 13589998642
Q ss_pred CCCCCHHHHHH-HHHHhcCCCCEEEEEec
Q 016981 237 EHMPDKSKFVS-ELARVTAPAGTIIIVTW 264 (379)
Q Consensus 237 ~~~~~~~~~l~-~~~r~LkpgG~l~i~~~ 264 (379)
.. ..++. +....+|+|+.++....
T Consensus 276 ---G~-~~vI~~~~~~~mK~GailiNvG~ 300 (425)
T PRK05476 276 ---GN-KDVITAEHMEAMKDGAILANIGH 300 (425)
T ss_pred ---CC-HHHHHHHHHhcCCCCCEEEEcCC
Confidence 22 34555 68899999999888764
No 381
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=84.91 E-value=7.6 Score=30.92 Aligned_cols=90 Identities=23% Similarity=0.376 Sum_probs=49.6
Q ss_pred CCEEEEeCCcccH-HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCC-CCcccEEEecccc
Q 016981 159 PKNVVDVGCGIGG-SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP-DGQFDLVWSMESG 236 (379)
Q Consensus 159 ~~~vLDiGcGtG~-~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~V~~~~~l 236 (379)
..+|+|+|-|.=. .+..|.+. |..|+++|+.+. .+ +..+.++..|+.+..+. -...|+|++..
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~-G~dV~~tDi~~~---~a---------~~g~~~v~DDif~P~l~iY~~a~lIYSiR-- 78 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKER-GFDVIATDINPR---KA---------PEGVNFVVDDIFNPNLEIYEGADLIYSIR-- 78 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHH-S-EEEEE-SS-S----------------STTEE---SSS--HHHHTTEEEEEEES--
T ss_pred CCcEEEECcCCCHHHHHHHHHc-CCcEEEEECccc---cc---------ccCcceeeecccCCCHHHhcCCcEEEEeC--
Confidence 5699999999765 45556655 799999999986 11 13577899998774311 13578888654
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEeccC
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCH 266 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 266 (379)
.-++.+..+.++++.+ |.-+++.....
T Consensus 79 -PP~El~~~il~lA~~v--~adlii~pL~~ 105 (127)
T PF03686_consen 79 -PPPELQPPILELAKKV--GADLIIRPLGG 105 (127)
T ss_dssp ---TTSHHHHHHHHHHH--T-EEEEE-BTT
T ss_pred -CChHHhHHHHHHHHHh--CCCEEEECCCC
Confidence 3345577777777744 56677766543
No 382
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=84.66 E-value=5.9 Score=37.43 Aligned_cols=97 Identities=23% Similarity=0.263 Sum_probs=59.8
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC-C-C-CCCCcccEEEe
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-Q-P-FPDGQFDLVWS 232 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~-~~~~~fD~V~~ 232 (379)
++.+||=.|+| .|..+..+++..|. .++++|.++...+.+++ .|...-+.....+... . . .....+|+|+-
T Consensus 166 ~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld 241 (351)
T cd08285 166 LGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLTGGKGVDAVII 241 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHhCCCCCcEEEE
Confidence 47889888876 45667777777776 59999999887777664 2321111111111100 0 1 12245898874
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
... . ...+.++.+.|+++|+++....
T Consensus 242 ~~g-----~-~~~~~~~~~~l~~~G~~v~~g~ 267 (351)
T cd08285 242 AGG-----G-QDTFEQALKVLKPGGTISNVNY 267 (351)
T ss_pred CCC-----C-HHHHHHHHHHhhcCCEEEEecc
Confidence 211 1 3568899999999999887654
No 383
>PRK12939 short chain dehydrogenase; Provisional
Probab=84.64 E-value=7.5 Score=34.43 Aligned_cols=75 Identities=19% Similarity=0.134 Sum_probs=49.6
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----CC-----CC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----DG 225 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~~ 225 (379)
++++|=.|+ +|.++..+++.+ |.+|++++-++..+....+.++..+ .++.++.+|+.+.. +. -+
T Consensus 7 ~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK12939 7 GKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAALG 83 (250)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 678887775 555566665544 7899999988877666555554433 46888899987632 10 14
Q ss_pred cccEEEecccc
Q 016981 226 QFDLVWSMESG 236 (379)
Q Consensus 226 ~fD~V~~~~~l 236 (379)
..|+|+.+...
T Consensus 84 ~id~vi~~ag~ 94 (250)
T PRK12939 84 GLDGLVNNAGI 94 (250)
T ss_pred CCCEEEECCCC
Confidence 68998876543
No 384
>PRK07109 short chain dehydrogenase; Provisional
Probab=84.36 E-value=17 Score=34.29 Aligned_cols=75 Identities=23% Similarity=0.157 Sum_probs=49.9
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-C---------CCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-F---------PDG 225 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~---------~~~ 225 (379)
+.+||=.|++.| ++..+++.+ |.+|+.++-++..++...+.+...+ .++.++.+|+.+.. . .-+
T Consensus 8 ~k~vlITGas~g-IG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 8 RQVVVITGASAG-VGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred CCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence 567888886544 444444433 7899999999887776666665544 36788889987632 0 124
Q ss_pred cccEEEecccc
Q 016981 226 QFDLVWSMESG 236 (379)
Q Consensus 226 ~fD~V~~~~~l 236 (379)
.+|+++.+-..
T Consensus 85 ~iD~lInnAg~ 95 (334)
T PRK07109 85 PIDTWVNNAMV 95 (334)
T ss_pred CCCEEEECCCc
Confidence 68999876554
No 385
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=84.29 E-value=13 Score=37.89 Aligned_cols=88 Identities=18% Similarity=0.179 Sum_probs=54.6
Q ss_pred CEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC----CCCCcccEEEe
Q 016981 160 KNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVWS 232 (379)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~V~~ 232 (379)
.+|+=+||| .++..+++.. +..|+.+|.+++.++.+++ .....+.+|..+.. ..-+..|.+++
T Consensus 418 ~hiiI~G~G--~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~--------~g~~~i~GD~~~~~~L~~a~i~~a~~viv 487 (558)
T PRK10669 418 NHALLVGYG--RVGSLLGEKLLAAGIPLVVIETSRTRVDELRE--------RGIRAVLGNAANEEIMQLAHLDCARWLLL 487 (558)
T ss_pred CCEEEECCC--hHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH--------CCCeEEEcCCCCHHHHHhcCccccCEEEE
Confidence 456666555 5555565544 6789999999998888764 24778999988742 12346786654
Q ss_pred ccccCCCCCH--HHHHHHHHHhcCCCCEEEEE
Q 016981 233 MESGEHMPDK--SKFVSELARVTAPAGTIIIV 262 (379)
Q Consensus 233 ~~~l~~~~~~--~~~l~~~~r~LkpgG~l~i~ 262 (379)
. .+|. ...+-...+...|...++..
T Consensus 488 ~-----~~~~~~~~~iv~~~~~~~~~~~iiar 514 (558)
T PRK10669 488 T-----IPNGYEAGEIVASAREKRPDIEIIAR 514 (558)
T ss_pred E-----cCChHHHHHHHHHHHHHCCCCeEEEE
Confidence 2 1222 22233445666777766653
No 386
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=84.04 E-value=14 Score=34.94 Aligned_cols=97 Identities=22% Similarity=0.133 Sum_probs=58.0
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCC----CC-C-CCCCcccE
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL----QQ-P-FPDGQFDL 229 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~----~~-~-~~~~~fD~ 229 (379)
++.+||=.|+| .|..+..+++..|. +|++++.++...+.+++ .|...-+.....+.. .+ . .....+|+
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d~ 252 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE----FGADATIDIDELPDPQRRAIVRDITGGRGADV 252 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCCeEEcCcccccHHHHHHHHHHhCCCCCcE
Confidence 47788888865 35556667777788 89999998877666543 232110111110100 00 0 12246898
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
|+-... . ...+....+.|+++|+++....
T Consensus 253 vid~~g-----~-~~~~~~~~~~l~~~G~~v~~g~ 281 (361)
T cd08231 253 VIEASG-----H-PAAVPEGLELLRRGGTYVLVGS 281 (361)
T ss_pred EEECCC-----C-hHHHHHHHHHhccCCEEEEEcC
Confidence 874321 1 3467788899999999987653
No 387
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=83.24 E-value=8.5 Score=36.04 Aligned_cols=94 Identities=21% Similarity=0.215 Sum_probs=58.5
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC---CCCCcccEEEec
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLVWSM 233 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~V~~~ 233 (379)
++.+||=.|+| .|..+..+++..|.+++.++.++...+.+++ .|. . .++...-.+.. .....+|+|+..
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~----~g~-~--~~i~~~~~~~~~~~~~~~~~d~vi~~ 235 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARK----LGA-H--HYIDTSKEDVAEALQELGGAKLILAT 235 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH----cCC-c--EEecCCCccHHHHHHhcCCCCEEEEC
Confidence 37889988865 3556667777778899999999887777644 222 1 11111101110 001347888742
Q ss_pred cccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
. . ....+..+.+.|+++|+++....
T Consensus 236 ~--g----~~~~~~~~~~~l~~~G~~v~~g~ 260 (333)
T cd08296 236 A--P----NAKAISALVGGLAPRGKLLILGA 260 (333)
T ss_pred C--C----chHHHHHHHHHcccCCEEEEEec
Confidence 1 1 13568888999999999887764
No 388
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=83.18 E-value=5.9 Score=33.80 Aligned_cols=80 Identities=16% Similarity=0.219 Sum_probs=49.9
Q ss_pred CEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCC--CCCeEEEEccCCCCC---------CCCCcc
Q 016981 160 KNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGL--ADKVSFQVGDALQQP---------FPDGQF 227 (379)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~i~~~~~d~~~~~---------~~~~~f 227 (379)
..|+.+|||--.....+.... +..++-+|. |++++.-++.+...+. +.+.+++.+|+.+.. +..+..
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~p 158 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDRP 158 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTSE
T ss_pred cEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCCC
Confidence 489999999988888887754 567888888 5566666666555421 123567888987521 334556
Q ss_pred cEEEeccccCCCC
Q 016981 228 DLVWSMESGEHMP 240 (379)
Q Consensus 228 D~V~~~~~l~~~~ 240 (379)
-++++-+++.+++
T Consensus 159 tl~i~Egvl~Yl~ 171 (183)
T PF04072_consen 159 TLFIAEGVLMYLS 171 (183)
T ss_dssp EEEEEESSGGGS-
T ss_pred eEEEEcchhhcCC
Confidence 6777788888885
No 389
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=83.12 E-value=8.8 Score=36.51 Aligned_cols=97 Identities=16% Similarity=0.127 Sum_probs=57.3
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecccc
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (379)
++.+||-.|+| .|..+..+++..|.++++++.++.....+.+. .|. ..+ +...+...+.-....+|+|+-.-
T Consensus 180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~---~Ga-~~~-i~~~~~~~~~~~~~~~D~vid~~-- 252 (357)
T PLN02514 180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEH---LGA-DDY-LVSSDAAEMQEAADSLDYIIDTV-- 252 (357)
T ss_pred CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHh---cCC-cEE-ecCCChHHHHHhcCCCcEEEECC--
Confidence 47888888765 46667778887788899998887665544332 232 111 11111011100012478776431
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
. . ...+..+.+.|++||+++.....
T Consensus 253 g---~-~~~~~~~~~~l~~~G~iv~~G~~ 277 (357)
T PLN02514 253 P---V-FHPLEPYLSLLKLDGKLILMGVI 277 (357)
T ss_pred C---c-hHHHHHHHHHhccCCEEEEECCC
Confidence 1 1 34677888999999999887643
No 390
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=83.07 E-value=13 Score=37.23 Aligned_cols=106 Identities=18% Similarity=0.207 Sum_probs=65.3
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc--C---CEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEccCCCC-CC-CCCcccE
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF--G---AKCQGITLSPVQAQRANALAAARGLA-DKVSFQVGDALQQ-PF-PDGQFDL 229 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~---~~v~gvD~s~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~-~~-~~~~fD~ 229 (379)
++..|.|..||+|.+.....+.. + ..++|.+..+.+...++.+..-.+.. +......+|-... .+ ....||.
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence 36799999999999887654432 2 46999999999999888875444332 1222223332221 11 2345777
Q ss_pred EEecccc--------------------CC----CCC-HHHHHHHHHHhcCCCCEEEEEe
Q 016981 230 VWSMESG--------------------EH----MPD-KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 230 V~~~~~l--------------------~~----~~~-~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
|+++--+ .| ..+ -..++..+..+|++||+..++-
T Consensus 297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~ 355 (501)
T TIGR00497 297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVC 355 (501)
T ss_pred EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEe
Confidence 7654311 11 111 2467788889999999866654
No 391
>PRK08339 short chain dehydrogenase; Provisional
Probab=82.94 E-value=26 Score=31.53 Aligned_cols=76 Identities=20% Similarity=0.219 Sum_probs=49.5
Q ss_pred CCEEEEeCCcccH---HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----C----CCCc
Q 016981 159 PKNVVDVGCGIGG---SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F----PDGQ 226 (379)
Q Consensus 159 ~~~vLDiGcGtG~---~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~----~~~~ 226 (379)
++++|=.|++.|. ++..+++. |.+|+.++.++..++.+.+.+.... ..++.++.+|+.+.. + .-+.
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~ 85 (263)
T PRK08339 8 GKLAFTTASSKGIGFGVARVLARA-GADVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIGE 85 (263)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence 6788888877654 23334443 7899999999887776665554321 236888889987642 1 1146
Q ss_pred ccEEEecccc
Q 016981 227 FDLVWSMESG 236 (379)
Q Consensus 227 fD~V~~~~~l 236 (379)
.|+++.+...
T Consensus 86 iD~lv~nag~ 95 (263)
T PRK08339 86 PDIFFFSTGG 95 (263)
T ss_pred CcEEEECCCC
Confidence 8988876543
No 392
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=82.94 E-value=16 Score=34.33 Aligned_cols=96 Identities=22% Similarity=0.249 Sum_probs=57.2
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccC---CCCCCCCCcccEEEe
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDA---LQQPFPDGQFDLVWS 232 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~---~~~~~~~~~fD~V~~ 232 (379)
++.+||-.|+|. |..+..+++..|. .|++++-++.-.+.+++ .|...-+.....+. .+. .+.+.+|+|+.
T Consensus 163 ~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~-~~~~~vd~vld 237 (341)
T cd05281 163 SGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKK----MGADVVINPREEDVVEVKSV-TDGTGVDVVLE 237 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCcceeeCcccccHHHHHHH-cCCCCCCEEEE
Confidence 477888777653 6667777877777 78888877766665553 22210011111111 011 12346899875
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
.-. ....+.++.+.|+++|+++....
T Consensus 238 ~~g------~~~~~~~~~~~l~~~G~~v~~g~ 263 (341)
T cd05281 238 MSG------NPKAIEQGLKALTPGGRVSILGL 263 (341)
T ss_pred CCC------CHHHHHHHHHHhccCCEEEEEcc
Confidence 321 13467888899999999887653
No 393
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=82.74 E-value=6.4 Score=36.52 Aligned_cols=90 Identities=20% Similarity=0.221 Sum_probs=53.3
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecccc
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (379)
.+.+|+=+|.|. |..+...++..|++|+.+|.++...+.++. .| ..+. +..++...-..+|+|+..-
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~----~G----~~~~--~~~~l~~~l~~aDiVI~t~-- 218 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITE----MG----LSPF--HLSELAEEVGKIDIIFNTI-- 218 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----cC----Ceee--cHHHHHHHhCCCCEEEECC--
Confidence 478999999874 344444445558899999999876555433 22 2222 1112111124689998742
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+. .-+-++..+.++||+.++-..
T Consensus 219 ---p~-~~i~~~~l~~~~~g~vIIDla 241 (296)
T PRK08306 219 ---PA-LVLTKEVLSKMPPEALIIDLA 241 (296)
T ss_pred ---Ch-hhhhHHHHHcCCCCcEEEEEc
Confidence 11 123356677899988766443
No 394
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=82.73 E-value=13 Score=34.51 Aligned_cols=89 Identities=17% Similarity=0.179 Sum_probs=56.4
Q ss_pred CCEEEEeCCcc-cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcGt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
+.+||=.|||. |..+..+++..|.+++.++.++...+.+++ .|. .... +.... +...+|+++....
T Consensus 168 ~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~----~g~----~~~~-~~~~~--~~~~vD~vi~~~~-- 234 (329)
T cd08298 168 GQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARE----LGA----DWAG-DSDDL--PPEPLDAAIIFAP-- 234 (329)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH----hCC----cEEe-ccCcc--CCCcccEEEEcCC--
Confidence 77888787653 344555666668899999998877666643 232 1111 11111 2345888774321
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 238 HMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
....+.++.+.|+++|++++...
T Consensus 235 ----~~~~~~~~~~~l~~~G~~v~~g~ 257 (329)
T cd08298 235 ----VGALVPAALRAVKKGGRVVLAGI 257 (329)
T ss_pred ----cHHHHHHHHHHhhcCCEEEEEcC
Confidence 13468899999999999997653
No 395
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=82.71 E-value=22 Score=31.96 Aligned_cols=103 Identities=16% Similarity=0.087 Sum_probs=59.8
Q ss_pred CCCEEEEeCCccc-HHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC----------CC
Q 016981 158 RPKNVVDVGCGIG-GSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FP 223 (379)
Q Consensus 158 ~~~~vLDiGcGtG-~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~ 223 (379)
.++.+|-.|+++| ..+..+++++ |.+|+.++.+....+.+++..... ..+.++.+|+.+.. -.
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~v~~~~~~~~~~ 85 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEEL---DAPIFLPLDVREPGQLEAVFARIAEE 85 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhh---ccceEEecCcCCHHHHHHHHHHHHHH
Confidence 3678999998762 5555555544 789988888765433333332222 13456778876531 01
Q ss_pred CCcccEEEeccccCC-------CC--C---HHH-----------HHHHHHHhcCCCCEEEEEe
Q 016981 224 DGQFDLVWSMESGEH-------MP--D---KSK-----------FVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 224 ~~~fD~V~~~~~l~~-------~~--~---~~~-----------~l~~~~r~LkpgG~l~i~~ 263 (379)
-+..|+++.+-.+.. +. + +.. +.+.+...++.+|.++...
T Consensus 86 ~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~is 148 (258)
T PRK07533 86 WGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMS 148 (258)
T ss_pred cCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEe
Confidence 257899987755432 11 1 111 3455667777788876654
No 396
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=82.51 E-value=2.6 Score=39.37 Aligned_cols=64 Identities=23% Similarity=0.255 Sum_probs=49.3
Q ss_pred EEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC---CCCCcccEEEec
Q 016981 161 NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLVWSM 233 (379)
Q Consensus 161 ~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~V~~~ 233 (379)
+++|+=||.|.+..-+....-..+.++|+++.+.+.-+.++. .....|+.++. ++. .+|+++..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~-~~D~l~gg 68 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPK-DVDLLIGG 68 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHH-T-SEEEEE
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccc-cceEEEec
Confidence 799999999999998887632468899999999998888762 67888988764 443 59999864
No 397
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=82.40 E-value=14 Score=31.67 Aligned_cols=85 Identities=20% Similarity=0.248 Sum_probs=57.6
Q ss_pred CCEEEEeCCc-ccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 159 PKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 159 ~~~vLDiGcG-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
+.+||=+|.= ||.....+... ..+|+.+|+.|.|-.. +|+++.|... +-+..+.+|+|+-.-.+.
T Consensus 45 ~~~vli~G~YltG~~~a~~Ls~-~~~vtv~Di~p~~r~~---------lp~~v~Fr~~----~~~~~G~~DlivDlTGlG 110 (254)
T COG4017 45 FKEVLIFGVYLTGNYTAQMLSK-ADKVTVVDIHPFMRGF---------LPNNVKFRNL----LKFIRGEVDLIVDLTGLG 110 (254)
T ss_pred cceEEEEEeeehhHHHHHHhcc-cceEEEecCCHHHHhc---------CCCCccHhhh----cCCCCCceeEEEeccccC
Confidence 7889999864 67666665554 6799999999987554 5678887644 334568899999877776
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 238 HMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
-+. .++ .+-+.|+ .+++-+.
T Consensus 111 G~~--Pe~----L~~fnp~-vfiVEdP 130 (254)
T COG4017 111 GIE--PEF----LAKFNPK-VFIVEDP 130 (254)
T ss_pred CCC--HHH----HhccCCc-eEEEECC
Confidence 652 222 3445565 4445444
No 398
>PRK08267 short chain dehydrogenase; Provisional
Probab=82.39 E-value=16 Score=32.71 Aligned_cols=73 Identities=16% Similarity=0.176 Sum_probs=46.7
Q ss_pred CEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----CC------CC
Q 016981 160 KNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP------DG 225 (379)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~------~~ 225 (379)
+++|-.|++. .++..+++.+ |.+|+.++.++..++...+... ..++.++.+|+.+.. +. .+
T Consensus 2 k~vlItGasg-~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~ 76 (260)
T PRK08267 2 KSIFITGAAS-GIGRATALLFAAEGWRVGAYDINEAGLAALAAELG----AGNAWTGALDVTDRAAWDAALADFAAATGG 76 (260)
T ss_pred cEEEEeCCCc-hHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc----CCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 3577777654 4444444433 7899999998876665544332 136888999987632 10 35
Q ss_pred cccEEEeccccC
Q 016981 226 QFDLVWSMESGE 237 (379)
Q Consensus 226 ~fD~V~~~~~l~ 237 (379)
.+|+|+.+....
T Consensus 77 ~id~vi~~ag~~ 88 (260)
T PRK08267 77 RLDVLFNNAGIL 88 (260)
T ss_pred CCCEEEECCCCC
Confidence 689998765543
No 399
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=82.26 E-value=4.2 Score=39.10 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=34.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAA 202 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~ 202 (379)
+++||-|.+|......++.+. ..+|++||++|.++...+-+.+
T Consensus 36 ~d~vl~ItSaG~N~L~yL~~~-P~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 36 DDRVLTITSAGCNALDYLLAG-PKRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred CCeEEEEccCCchHHHHHhcC-CceEEEEeCCHHHHHHHHHHHH
Confidence 899999987776666666654 7899999999999988776654
No 400
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=82.22 E-value=4.4 Score=38.73 Aligned_cols=108 Identities=18% Similarity=0.192 Sum_probs=72.3
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC-CCCCeEEEEccCCCCC--------------
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG-LADKVSFQVGDALQQP-------------- 221 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~i~~~~~d~~~~~-------------- 221 (379)
.+.++||.+|+.+.....+++.+ ..+--|+++....+..+..+....+ ...+..+..+|+...+
T Consensus 180 d~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~ 259 (364)
T KOG1269|consen 180 DGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSFG 259 (364)
T ss_pred CcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhcc
Confidence 46799999999999999999877 3456688888887777665433211 1123444444433211
Q ss_pred ---------------CCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCC
Q 016981 222 ---------------FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRD 268 (379)
Q Consensus 222 ---------------~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~ 268 (379)
++...+|. ..++.|+.+...++......++|+|.+.+.+.....
T Consensus 260 ~~~~~~~~dl~~~~s~~w~~~~~---~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~e~~~~~ 318 (364)
T KOG1269|consen 260 FEHLKLEKDLALKSSFPWNTPLT---RDTITHWQDKSALFRGRVATLKPGGKVLILEYIRGL 318 (364)
T ss_pred chhhhhcccccCCCccccccccc---hhheeecccccHHHHhHhhccCcCceEEehhhcCcC
Confidence 12233444 455667777778889999999999999998876543
No 401
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=82.12 E-value=11 Score=35.80 Aligned_cols=98 Identities=20% Similarity=0.250 Sum_probs=59.4
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccC--CC-C-CCCCCcccEEE
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDA--LQ-Q-PFPDGQFDLVW 231 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~--~~-~-~~~~~~fD~V~ 231 (379)
++.+||=+|+| .|..+..+++..|. +|+++|.++...+.+++ .|...-+.....+. .+ . ....+.+|+|+
T Consensus 184 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~~~g~d~vi 259 (365)
T cd08277 184 PGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKE----FGATDFINPKDSDKPVSEVIREMTGGGVDYSF 259 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCCcEeccccccchHHHHHHHHhCCCCCEEE
Confidence 48899988875 35566677777777 79999999988887754 23210011111000 00 0 01124589887
Q ss_pred eccccCCCCCHHHHHHHHHHhcCCC-CEEEEEecc
Q 016981 232 SMESGEHMPDKSKFVSELARVTAPA-GTIIIVTWC 265 (379)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~r~Lkpg-G~l~i~~~~ 265 (379)
-.- .. ...+....+.|+++ |++++....
T Consensus 260 d~~-----g~-~~~~~~~~~~l~~~~G~~v~~g~~ 288 (365)
T cd08277 260 ECT-----GN-ADLMNEALESTKLGWGVSVVVGVP 288 (365)
T ss_pred ECC-----CC-hHHHHHHHHhcccCCCEEEEEcCC
Confidence 421 11 35678888899886 999887643
No 402
>PRK06701 short chain dehydrogenase; Provisional
Probab=81.66 E-value=17 Score=33.44 Aligned_cols=102 Identities=19% Similarity=0.150 Sum_probs=58.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHH-HHHHHHHHHHHcCCCCCeEEEEccCCCCC-----CC-----C
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPV-QAQRANALAAARGLADKVSFQVGDALQQP-----FP-----D 224 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~ 224 (379)
+++||-.|++.| ++..+++++ |.+|+.++.+.. ..+.....+...+ .++.++.+|+.+.. +. -
T Consensus 46 ~k~iLItGasgg-IG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~i~~~~ 122 (290)
T PRK06701 46 GKVALITGGDSG-IGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEG--VKCLLIPGDVSDEAFCKDAVEETVREL 122 (290)
T ss_pred CCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 678888886554 344444433 789998887642 3333333343333 36778889987632 10 1
Q ss_pred CcccEEEeccccCCC----CC----------------HHHHHHHHHHhcCCCCEEEEEe
Q 016981 225 GQFDLVWSMESGEHM----PD----------------KSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 225 ~~fD~V~~~~~l~~~----~~----------------~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+.+|+|+.+...... .+ ...+++.+.+.++++|.+++..
T Consensus 123 ~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 123 GRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred CCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 467988865443221 11 1234555666677788877655
No 403
>PRK06940 short chain dehydrogenase; Provisional
Probab=81.59 E-value=27 Score=31.72 Aligned_cols=99 Identities=20% Similarity=0.223 Sum_probs=60.8
Q ss_pred CEEEEeCCcccHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----C----CCCccc
Q 016981 160 KNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F----PDGQFD 228 (379)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~----~~~~fD 228 (379)
+.+|=-|+ |.++..+++.+ |.+|+.+|.++..++.+.+.+...+ .++.++.+|+.+.. + ..+.+|
T Consensus 3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id 78 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPVT 78 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCCC
Confidence 34555564 45777777666 7899999998876665555554433 36778888987632 1 125689
Q ss_pred EEEeccccCCC-CCHH-----------HHHHHHHHhcCCCCEEEEE
Q 016981 229 LVWSMESGEHM-PDKS-----------KFVSELARVTAPAGTIIIV 262 (379)
Q Consensus 229 ~V~~~~~l~~~-~~~~-----------~~l~~~~r~LkpgG~l~i~ 262 (379)
+++.+-.+... .++. .+++.+.+.++++|.+++.
T Consensus 79 ~li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~i 124 (275)
T PRK06940 79 GLVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVI 124 (275)
T ss_pred EEEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEE
Confidence 99877654332 2222 2455566666777765443
No 404
>PRK05650 short chain dehydrogenase; Provisional
Probab=81.57 E-value=25 Score=31.68 Aligned_cols=74 Identities=16% Similarity=0.170 Sum_probs=47.4
Q ss_pred EEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-C---------CCCcc
Q 016981 161 NVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-F---------PDGQF 227 (379)
Q Consensus 161 ~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~---------~~~~f 227 (379)
+||-.|+ +|.++..+++.+ |.+|+.++.+...++.+...+...+ .++.+..+|+.+.. . ..+.+
T Consensus 2 ~vlVtGa-sggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~i~~~~~~i 78 (270)
T PRK05650 2 RVMITGA-ASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAG--GDGFYQRCDVRDYSQLTALAQACEEKWGGI 78 (270)
T ss_pred EEEEecC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 5776775 444455554444 7899999998877666555554433 46778888987632 0 11468
Q ss_pred cEEEeccccC
Q 016981 228 DLVWSMESGE 237 (379)
Q Consensus 228 D~V~~~~~l~ 237 (379)
|+|+.+....
T Consensus 79 d~lI~~ag~~ 88 (270)
T PRK05650 79 DVIVNNAGVA 88 (270)
T ss_pred CEEEECCCCC
Confidence 9998776543
No 405
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=81.10 E-value=12 Score=35.54 Aligned_cols=98 Identities=16% Similarity=0.205 Sum_probs=59.4
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc--cCCC-C-CCCCCcccEEE
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVG--DALQ-Q-PFPDGQFDLVW 231 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~--d~~~-~-~~~~~~fD~V~ 231 (379)
++.+||=.|+| .|..+..+++..|. +|+++|.++...+.+++ .|...-+..... +..+ + ....+.+|+|+
T Consensus 187 ~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~v~~~~~~~~d~vi 262 (369)
T cd08301 187 KGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK----FGVTEFVNPKDHDKPVQEVIAEMTGGGVDYSF 262 (369)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCceEEcccccchhHHHHHHHHhCCCCCEEE
Confidence 48899999875 35566777777777 79999999988887754 232100111100 0000 0 01123588887
Q ss_pred eccccCCCCCHHHHHHHHHHhcCCC-CEEEEEecc
Q 016981 232 SMESGEHMPDKSKFVSELARVTAPA-GTIIIVTWC 265 (379)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~r~Lkpg-G~l~i~~~~ 265 (379)
-.- .. ...+....+.+++| |++++....
T Consensus 263 d~~-----G~-~~~~~~~~~~~~~~~g~~v~~g~~ 291 (369)
T cd08301 263 ECT-----GN-IDAMISAFECVHDGWGVTVLLGVP 291 (369)
T ss_pred ECC-----CC-hHHHHHHHHHhhcCCCEEEEECcC
Confidence 431 11 45677788899996 999887654
No 406
>PRK06128 oxidoreductase; Provisional
Probab=81.09 E-value=24 Score=32.47 Aligned_cols=102 Identities=21% Similarity=0.207 Sum_probs=59.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHH--HHHHHHHHHHHcCCCCCeEEEEccCCCCC-----C-----C
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPV--QAQRANALAAARGLADKVSFQVGDALQQP-----F-----P 223 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~--~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~ 223 (379)
+++||=.|++. .++..+++.+ |.+|+.+..+.. ..+...+.+...+ .++.++.+|+.+.. + .
T Consensus 55 ~k~vlITGas~-gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~ 131 (300)
T PRK06128 55 GRKALITGADS-GIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEG--RKAVALPGDLKDEAFCRQLVERAVKE 131 (300)
T ss_pred CCEEEEecCCC-cHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHHHHH
Confidence 67889888654 4445555444 788887766432 2233333333333 35778888987631 1 0
Q ss_pred CCcccEEEeccccCC----CCC-----H-----------HHHHHHHHHhcCCCCEEEEEe
Q 016981 224 DGQFDLVWSMESGEH----MPD-----K-----------SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 224 ~~~fD~V~~~~~l~~----~~~-----~-----------~~~l~~~~r~LkpgG~l~i~~ 263 (379)
-+..|+++.+-.... +.+ + ..+++.+.+.++++|.++...
T Consensus 132 ~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~s 191 (300)
T PRK06128 132 LGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTG 191 (300)
T ss_pred hCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEEC
Confidence 146899987765422 111 1 135566667778888877754
No 407
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=81.02 E-value=27 Score=30.90 Aligned_cols=77 Identities=21% Similarity=0.144 Sum_probs=50.7
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----C-----CCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~ 225 (379)
+.+||=.|. +|.++..+++++ |.+|++++-++...+.........+ .++.++.+|+.+.. + ..+
T Consensus 4 ~~~vlItG~-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK12429 4 GKVALVTGA-ASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAG--GKAIGVAMDVTDEEAINAGIDYAVETFG 80 (258)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 567776665 566677766655 7799999998877666555554433 46888889987531 0 113
Q ss_pred cccEEEeccccCC
Q 016981 226 QFDLVWSMESGEH 238 (379)
Q Consensus 226 ~fD~V~~~~~l~~ 238 (379)
.+|+|+.+....+
T Consensus 81 ~~d~vi~~a~~~~ 93 (258)
T PRK12429 81 GVDILVNNAGIQH 93 (258)
T ss_pred CCCEEEECCCCCC
Confidence 5899987655433
No 408
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=80.98 E-value=12 Score=32.72 Aligned_cols=71 Identities=30% Similarity=0.353 Sum_probs=46.9
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHH-HHHHHHHHHHHcCCCCCeEEEEccCCCC-----------CC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPV-QAQRANALAAARGLADKVSFQVGDALQQ-----------PF 222 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----------~~ 222 (379)
....||-.||..|..+..+++.+ |..|+++--+-+ |-+.+.+ . .+.....|+.+. .+
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~----~----gl~~~kLDV~~~~~V~~v~~evr~~ 77 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQ----F----GLKPYKLDVSKPEEVVTVSGEVRAN 77 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHh----h----CCeeEEeccCChHHHHHHHHHHhhC
Confidence 36789999999999999988877 778888754432 3333222 1 345556666542 24
Q ss_pred CCCcccEEEecccc
Q 016981 223 PDGQFDLVWSMESG 236 (379)
Q Consensus 223 ~~~~fD~V~~~~~l 236 (379)
++++.|+.+.+...
T Consensus 78 ~~Gkld~L~NNAG~ 91 (289)
T KOG1209|consen 78 PDGKLDLLYNNAGQ 91 (289)
T ss_pred CCCceEEEEcCCCC
Confidence 67888888865433
No 409
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=80.96 E-value=4.2 Score=38.81 Aligned_cols=94 Identities=16% Similarity=0.184 Sum_probs=59.5
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC----C-CCCCCcccEE
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ----Q-PFPDGQFDLV 230 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~----~-~~~~~~fD~V 230 (379)
++.+||=.|+|. |..+..+++..|. .++++|.++...+.+++ .+. ..++..+-.. + ......+|+|
T Consensus 186 ~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~----~g~---~~~i~~~~~~~~~~v~~~~~~~~d~v 258 (365)
T cd08278 186 PGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKE----LGA---THVINPKEEDLVAAIREITGGGVDYA 258 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCC---cEEecCCCcCHHHHHHHHhCCCCcEE
Confidence 478898888754 6677777877777 69999999887776654 221 1111111111 0 0113458988
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+-... . ...+..+.+.|+++|+++....
T Consensus 259 ld~~g-----~-~~~~~~~~~~l~~~G~~v~~g~ 286 (365)
T cd08278 259 LDTTG-----V-PAVIEQAVDALAPRGTLALVGA 286 (365)
T ss_pred EECCC-----C-cHHHHHHHHHhccCCEEEEeCc
Confidence 75321 1 2457888999999999887653
No 410
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=80.91 E-value=23 Score=33.35 Aligned_cols=123 Identities=16% Similarity=0.124 Sum_probs=76.6
Q ss_pred CCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC---CCCCcccEEEeccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLVWSMES 235 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~V~~~~~ 235 (379)
..+++|+=||.|.+..-+....-.-+.++|+++.+++.-+.++. ...+...|+.... +....+|+++...-
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~------~~~~~~~di~~~~~~~~~~~~~DvligGpP 76 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFP------HGDIILGDIKELDGEALRKSDVDVLIGGPP 76 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCC------CCceeechHhhcChhhccccCCCEEEeCCC
Confidence 56899999999999877777632357789999999988777653 2445566665442 21116899886433
Q ss_pred cCCC---------CCHH----HHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHH
Q 016981 236 GEHM---------PDKS----KFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADY 302 (379)
Q Consensus 236 l~~~---------~~~~----~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (379)
-..+ .|+. --+.++...++| .+++.+-+. .++.. . ....+.+
T Consensus 77 CQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~---------------gl~~~-----~---~~~~~~i 131 (328)
T COG0270 77 CQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVK---------------GLLSS-----K---GQTFDEI 131 (328)
T ss_pred CcchhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCc---------------hHHhc-----C---chHHHHH
Confidence 3222 2321 234556667788 555555221 11111 0 1256788
Q ss_pred HHHHHhCCCc
Q 016981 303 VKLLQSLSLE 312 (379)
Q Consensus 303 ~~~l~~aGF~ 312 (379)
.+.|++.||.
T Consensus 132 ~~~L~~~GY~ 141 (328)
T COG0270 132 KKELEELGYG 141 (328)
T ss_pred HHHHHHcCCc
Confidence 8999999986
No 411
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=80.81 E-value=7.1 Score=35.46 Aligned_cols=63 Identities=17% Similarity=0.147 Sum_probs=40.5
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF------GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 221 (379)
+...++|+|||.|.++.+++... ...++.||-...-. .+-.++........+.=+..|+.++.
T Consensus 18 ~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~dl~ 86 (259)
T PF05206_consen 18 PDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKDLD 86 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeeccc
Confidence 37799999999999999999876 24788999754322 33333333221124555566766653
No 412
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=80.32 E-value=9.5 Score=35.98 Aligned_cols=98 Identities=19% Similarity=0.157 Sum_probs=59.5
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC-C-C-CCCCcccEEEe
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-Q-P-FPDGQFDLVWS 232 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~-~~~~~fD~V~~ 232 (379)
++.+||=.|+| .|..+..+++..|. .|++++.++...+.+++. |...-+.....+..+ + . ...+.+|+|+-
T Consensus 172 ~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~l~~~~~~~~~d~vid 247 (351)
T cd08233 172 PGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL----GATIVLDPTEVDVVAEVRKLTGGGGVDVSFD 247 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEECCCccCHHHHHHHHhCCCCCCEEEE
Confidence 37888888764 35566677777787 899999998887777542 321001111111100 0 0 12234899875
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
... ....+..+.+.|+++|+++.....
T Consensus 248 ~~g------~~~~~~~~~~~l~~~G~~v~~g~~ 274 (351)
T cd08233 248 CAG------VQATLDTAIDALRPRGTAVNVAIW 274 (351)
T ss_pred CCC------CHHHHHHHHHhccCCCEEEEEccC
Confidence 321 134678889999999998887643
No 413
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=79.55 E-value=28 Score=32.59 Aligned_cols=97 Identities=20% Similarity=0.171 Sum_probs=57.2
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC-C--CCCCCcccEEEe
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-Q--PFPDGQFDLVWS 232 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~--~~~~~~fD~V~~ 232 (379)
++.+||-.|+| .|..+..+++..|.+ |++++-++...+.+++ .+...-+.....+..+ + ......+|+|+-
T Consensus 161 ~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~l~~~~~~~~~d~vld 236 (340)
T TIGR00692 161 SGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKK----MGATYVVNPFKEDVVKEVADLTDGEGVDVFLE 236 (340)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCcEEEcccccCHHHHHHHhcCCCCCCEEEE
Confidence 36777777765 455667777777876 8899888766665544 2221001111111100 0 112346899975
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
... ....+.++.+.|+++|+++....
T Consensus 237 ~~g------~~~~~~~~~~~l~~~g~~v~~g~ 262 (340)
T TIGR00692 237 MSG------APKALEQGLQAVTPGGRVSLLGL 262 (340)
T ss_pred CCC------CHHHHHHHHHhhcCCCEEEEEcc
Confidence 411 13568888999999999887654
No 414
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.28 E-value=12 Score=35.26 Aligned_cols=96 Identities=19% Similarity=0.225 Sum_probs=57.2
Q ss_pred CCEEEEeCCcc--cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH-------cCCC-----CCeEEEEccCCCCCCCC
Q 016981 159 PKNVVDVGCGI--GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAA-------RGLA-----DKVSFQVGDALQQPFPD 224 (379)
Q Consensus 159 ~~~vLDiGcGt--G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~-------~~~~-----~~i~~~~~d~~~~~~~~ 224 (379)
-.+|-=||+|+ ..++..++.. |.+|+..|.++..++.++.++.. .++. .++.+. .++.+ .-
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a-G~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~---av 81 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH-GLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEA---CV 81 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHH---Hh
Confidence 46788899885 2344455544 89999999999988776654431 2211 122221 11111 01
Q ss_pred CcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEE
Q 016981 225 GQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTII 260 (379)
Q Consensus 225 ~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~ 260 (379)
...|+|+-. +.+.+.-...+++++.+.++|+..|.
T Consensus 82 ~~aDlViEa-vpE~l~vK~~lf~~l~~~~~~~aIla 116 (321)
T PRK07066 82 ADADFIQES-APEREALKLELHERISRAAKPDAIIA 116 (321)
T ss_pred cCCCEEEEC-CcCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 345777643 33443345788999999999987443
No 415
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=79.07 E-value=7.1 Score=30.43 Aligned_cols=89 Identities=19% Similarity=0.266 Sum_probs=55.4
Q ss_pred CCEEEEeCCcccH-HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCC-CCcccEEEecccc
Q 016981 159 PKNVVDVGCGIGG-SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP-DGQFDLVWSMESG 236 (379)
Q Consensus 159 ~~~vLDiGcGtG~-~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~V~~~~~l 236 (379)
..+|.|+|-|-=. .+..|+++ |..|+++|+.+. . .+..++++..|+++.... -...|+|++ +
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~-g~dv~atDI~~~---~---------a~~g~~~v~DDitnP~~~iY~~A~lIYS---i 77 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAER-GFDVLATDINEK---T---------APEGLRFVVDDITNPNISIYEGADLIYS---I 77 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHc-CCcEEEEecccc---c---------CcccceEEEccCCCccHHHhhCccceee---c
Confidence 4599999988654 45566665 799999999876 1 124688999999875321 133567664 3
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
..-++....+-.+++.+ |..+++....
T Consensus 78 RpppEl~~~ildva~aV--ga~l~I~pL~ 104 (129)
T COG1255 78 RPPPELQSAILDVAKAV--GAPLYIKPLT 104 (129)
T ss_pred CCCHHHHHHHHHHHHhh--CCCEEEEecC
Confidence 33344455555555543 4455555433
No 416
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=79.06 E-value=18 Score=34.69 Aligned_cols=98 Identities=18% Similarity=0.091 Sum_probs=58.3
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc---cCCC-C-C-CCCCcccE
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVG---DALQ-Q-P-FPDGQFDL 229 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~---d~~~-~-~-~~~~~fD~ 229 (379)
++.+||=.|+|. |..+..+++..|. .|++++.++...+.+++ .|...-+..... +... + . .....+|+
T Consensus 203 ~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~~v~~~~~g~gvDv 278 (384)
T cd08265 203 PGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKE----MGADYVFNPTKMRDCLSGEKVMEVTKGWGADI 278 (384)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCCEEEcccccccccHHHHHHHhcCCCCCCE
Confidence 377888887753 4455667776677 79999998876555544 333111111110 1000 0 0 12345898
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
|+.. ..+....+.++.+.|+++|+++....
T Consensus 279 vld~-----~g~~~~~~~~~~~~l~~~G~~v~~g~ 308 (384)
T cd08265 279 QVEA-----AGAPPATIPQMEKSIAINGKIVYIGR 308 (384)
T ss_pred EEEC-----CCCcHHHHHHHHHHHHcCCEEEEECC
Confidence 8753 22334568888999999999987653
No 417
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=79.03 E-value=6.6 Score=32.30 Aligned_cols=53 Identities=25% Similarity=0.338 Sum_probs=30.9
Q ss_pred EeCCccc--HHHHHHH--HHc-CCEEEEEeCCHHHHHHHHHH--HHHcCCCCCeEEEEcc
Q 016981 164 DVGCGIG--GSSRYLA--KKF-GAKCQGITLSPVQAQRANAL--AAARGLADKVSFQVGD 216 (379)
Q Consensus 164 DiGcGtG--~~~~~l~--~~~-~~~v~gvD~s~~~~~~a~~~--~~~~~~~~~i~~~~~d 216 (379)
|||++.| .....+. ... +.+|+++|++|...+..+++ +.-......+++....
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~ 60 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYA 60 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEee
Confidence 8999999 4444443 222 57899999999999998888 5544322235555443
No 418
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=78.42 E-value=18 Score=37.49 Aligned_cols=89 Identities=18% Similarity=0.173 Sum_probs=56.4
Q ss_pred CCEEEEeCCcccHHHHHHHHH---cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC----CCCCcccEEE
Q 016981 159 PKNVVDVGCGIGGSSRYLAKK---FGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVW 231 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~---~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~V~ 231 (379)
..+|+=+|||. ++..+++. .+..++.+|.+++.++.+++ .....+.+|..+.. ..-+..|+|+
T Consensus 400 ~~~vII~G~Gr--~G~~va~~L~~~g~~vvvID~d~~~v~~~~~--------~g~~v~~GDat~~~~L~~agi~~A~~vv 469 (621)
T PRK03562 400 QPRVIIAGFGR--FGQIVGRLLLSSGVKMTVLDHDPDHIETLRK--------FGMKVFYGDATRMDLLESAGAAKAEVLI 469 (621)
T ss_pred cCcEEEEecCh--HHHHHHHHHHhCCCCEEEEECCHHHHHHHHh--------cCCeEEEEeCCCHHHHHhcCCCcCCEEE
Confidence 46788887764 33333332 26789999999999988865 24567889988752 1234677777
Q ss_pred eccccCCCCCH--HHHHHHHHHhcCCCCEEEEE
Q 016981 232 SMESGEHMPDK--SKFVSELARVTAPAGTIIIV 262 (379)
Q Consensus 232 ~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~i~ 262 (379)
+. .+|. ...+-...|.+.|+-.++.-
T Consensus 470 v~-----~~d~~~n~~i~~~ar~~~p~~~iiaR 497 (621)
T PRK03562 470 NA-----IDDPQTSLQLVELVKEHFPHLQIIAR 497 (621)
T ss_pred EE-----eCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 53 2333 23344456667787766553
No 419
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=78.15 E-value=6 Score=34.65 Aligned_cols=73 Identities=22% Similarity=0.275 Sum_probs=51.1
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 219 (379)
++.+++.+.++.-. ..-|.+||.|.|..++.+.+....+...++.++..+.-.+-..+. -+.+..+..+|+..
T Consensus 37 ~lT~KIvK~A~~~~-----~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EA--a~~~~~IHh~D~LR 109 (326)
T KOG0821|consen 37 RLTDKIVKKAGNLT-----NAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEA--APGKLRIHHGDVLR 109 (326)
T ss_pred HHHHHHHHhccccc-----cceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhc--CCcceEEeccccce
Confidence 35566666665443 788999999999999999987545778888887766655444332 23467777777754
No 420
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=78.03 E-value=16 Score=34.29 Aligned_cols=96 Identities=22% Similarity=0.214 Sum_probs=56.7
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC-C--CCCCCcccEEEe
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-Q--PFPDGQFDLVWS 232 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~--~~~~~~fD~V~~ 232 (379)
++.+||=.|+| .|..+..+++..| .+|++++.++.....+++ .|...-+.....+... + ..+...+|+|+.
T Consensus 166 ~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld 241 (345)
T cd08286 166 PGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLELTDGRGVDVVIE 241 (345)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHHhCCCCCCEEEE
Confidence 36777777764 2445566677667 789999998877666654 2321111111111100 0 012346898874
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.- .. ...+..+.+.|+++|+++...
T Consensus 242 ~~-----g~-~~~~~~~~~~l~~~g~~v~~g 266 (345)
T cd08286 242 AV-----GI-PATFELCQELVAPGGHIANVG 266 (345)
T ss_pred CC-----CC-HHHHHHHHHhccCCcEEEEec
Confidence 32 22 345788889999999988765
No 421
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=78.00 E-value=39 Score=31.61 Aligned_cols=91 Identities=21% Similarity=0.307 Sum_probs=56.0
Q ss_pred CCCEEEEeCC--cccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC---C-CCCCCcccEEE
Q 016981 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ---Q-PFPDGQFDLVW 231 (379)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~---~-~~~~~~fD~V~ 231 (379)
++.+||=.|+ +.|..+..+++..|+++++++.+. ..+.+++ .|. . .+...+-.. . ......+|+|+
T Consensus 177 ~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~~----~g~--~-~~~~~~~~~~~~~~~~~~~~~d~vi 248 (350)
T cd08274 177 AGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVRA----LGA--D-TVILRDAPLLADAKALGGEPVDVVA 248 (350)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHHh----cCC--e-EEEeCCCccHHHHHhhCCCCCcEEE
Confidence 4889999987 456677778887788999988654 4444432 332 1 111111000 0 01234689887
Q ss_pred eccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 232 SMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.... ...+..+.+.|+++|.++...
T Consensus 249 ~~~g-------~~~~~~~~~~l~~~G~~v~~g 273 (350)
T cd08274 249 DVVG-------GPLFPDLLRLLRPGGRYVTAG 273 (350)
T ss_pred ecCC-------HHHHHHHHHHhccCCEEEEec
Confidence 5322 235788899999999988664
No 422
>PRK06182 short chain dehydrogenase; Validated
Probab=77.99 E-value=29 Score=31.33 Aligned_cols=71 Identities=14% Similarity=0.144 Sum_probs=45.6
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----C-----CCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~ 225 (379)
+++||=.|++ |.++..+++.+ |.+|++++-++..++.... .++.++.+|+.+.. + ..+
T Consensus 3 ~k~vlItGas-ggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~--------~~~~~~~~Dv~~~~~~~~~~~~~~~~~~ 73 (273)
T PRK06182 3 KKVALVTGAS-SGIGKATARRLAAQGYTVYGAARRVDKMEDLAS--------LGVHPLSLDVTDEASIKAAVDTIIAEEG 73 (273)
T ss_pred CCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh--------CCCeEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 5678877864 44566665544 7899999988765543221 24778888887642 1 124
Q ss_pred cccEEEeccccCC
Q 016981 226 QFDLVWSMESGEH 238 (379)
Q Consensus 226 ~fD~V~~~~~l~~ 238 (379)
..|+++.+.....
T Consensus 74 ~id~li~~ag~~~ 86 (273)
T PRK06182 74 RIDVLVNNAGYGS 86 (273)
T ss_pred CCCEEEECCCcCC
Confidence 6899998765543
No 423
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=77.83 E-value=9.6 Score=34.38 Aligned_cols=88 Identities=14% Similarity=0.143 Sum_probs=63.0
Q ss_pred CCCCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccc
Q 016981 156 TKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (379)
Q Consensus 156 ~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (379)
..+++...|+|.-.|.|+-.|.++ +..|++||-.+-.... -. ...++....|..+..-.....|-.+|..+
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr-~m~V~aVDng~ma~sL-----~d---tg~v~h~r~DGfk~~P~r~~idWmVCDmV 279 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKR-NMRVYAVDNGPMAQSL-----MD---TGQVTHLREDGFKFRPTRSNIDWMVCDMV 279 (358)
T ss_pred hcCCceeeecccCCCccchhhhhc-ceEEEEeccchhhhhh-----hc---ccceeeeeccCcccccCCCCCceEEeehh
Confidence 346999999999999999999998 7899999986532221 11 14677777787766323467888887533
Q ss_pred cCCCCCHHHHHHHHHHhcCCC
Q 016981 236 GEHMPDKSKFVSELARVTAPA 256 (379)
Q Consensus 236 l~~~~~~~~~l~~~~r~Lkpg 256 (379)
..+.++-..+...|..|
T Consensus 280 ----EkP~rv~~li~~Wl~nG 296 (358)
T COG2933 280 ----EKPARVAALIAKWLVNG 296 (358)
T ss_pred ----cCcHHHHHHHHHHHHcc
Confidence 55667777777777654
No 424
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=77.82 E-value=8 Score=35.69 Aligned_cols=74 Identities=19% Similarity=0.198 Sum_probs=45.4
Q ss_pred CcccHHHHHHHHHc----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEE----EEccCCCCC-----CCCCcccEEEec
Q 016981 167 CGIGGSSRYLAKKF----GAKCQGITLSPVQAQRANALAAARGLADKVSF----QVGDALQQP-----FPDGQFDLVWSM 233 (379)
Q Consensus 167 cGtG~~~~~l~~~~----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~----~~~d~~~~~-----~~~~~fD~V~~~ 233 (379)
.|+|..+..|+++. ..+++.+|.++..+-..++.+......+++.+ +.+|+.+.. +....+|+|+-.
T Consensus 5 Ga~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiVfHa 84 (293)
T PF02719_consen 5 GAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDIVFHA 84 (293)
T ss_dssp TTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SEEEE-
T ss_pred ccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCEEEEC
Confidence 47888888888876 36899999999998888887754322234554 478887632 555689999999
Q ss_pred cccCCCC
Q 016981 234 ESGEHMP 240 (379)
Q Consensus 234 ~~l~~~~ 240 (379)
..+-|++
T Consensus 85 AA~KhVp 91 (293)
T PF02719_consen 85 AALKHVP 91 (293)
T ss_dssp -----HH
T ss_pred hhcCCCC
Confidence 9999984
No 425
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=77.79 E-value=25 Score=31.61 Aligned_cols=104 Identities=16% Similarity=0.131 Sum_probs=58.2
Q ss_pred CCEEEEeCCcc-cHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----C-----CC
Q 016981 159 PKNVVDVGCGI-GGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PD 224 (379)
Q Consensus 159 ~~~vLDiGcGt-G~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~ 224 (379)
++++|=.|+++ +..+..+++.+ |.+|+.++.+....+..++...... ..++.++.+|+.+.. + .-
T Consensus 7 ~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 85 (257)
T PRK08594 7 GKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE-GQESLLLPCDVTSDEEITACFETIKEEV 85 (257)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC-CCceEEEecCCCCHHHHHHHHHHHHHhC
Confidence 67899999873 55555555544 7888888654221222222222211 136778888987632 0 12
Q ss_pred CcccEEEeccccCC-------CC--CHH--------------HHHHHHHHhcCCCCEEEEEe
Q 016981 225 GQFDLVWSMESGEH-------MP--DKS--------------KFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 225 ~~fD~V~~~~~l~~-------~~--~~~--------------~~l~~~~r~LkpgG~l~i~~ 263 (379)
+.+|+++.+-.+.. +. +.+ .+.+.+.+.++++|.++...
T Consensus 86 g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~is 147 (257)
T PRK08594 86 GVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLT 147 (257)
T ss_pred CCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEc
Confidence 67899886644321 11 111 12345666778888877654
No 426
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=77.76 E-value=4.9 Score=33.54 Aligned_cols=108 Identities=16% Similarity=0.185 Sum_probs=59.5
Q ss_pred EEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 016981 161 NVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (379)
Q Consensus 161 ~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (379)
+|-=||+| ..+..+++++ |..|++.|.++...+...+. .+.. ..+..+. -...|+|++.
T Consensus 3 ~Ig~IGlG--~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~--------g~~~-~~s~~e~---~~~~dvvi~~---- 64 (163)
T PF03446_consen 3 KIGFIGLG--NMGSAMARNLAKAGYEVTVYDRSPEKAEALAEA--------GAEV-ADSPAEA---AEQADVVILC---- 64 (163)
T ss_dssp EEEEE--S--HHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHT--------TEEE-ESSHHHH---HHHBSEEEE-----
T ss_pred EEEEEchH--HHHHHHHHHHHhcCCeEEeeccchhhhhhhHHh--------hhhh-hhhhhhH---hhcccceEee----
Confidence 45556664 5555555443 78999999998776655441 2222 2222222 1335888763
Q ss_pred CCCCH---HHHHHH--HHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCc
Q 016981 238 HMPDK---SKFVSE--LARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLE 312 (379)
Q Consensus 238 ~~~~~---~~~l~~--~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~ 312 (379)
+++. ..++.. +...|++|..++-.....+ .+..++.+.+++.|..
T Consensus 65 -v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p-----------------------------~~~~~~~~~~~~~g~~ 114 (163)
T PF03446_consen 65 -VPDDDAVEAVLFGENILAGLRPGKIIIDMSTISP-----------------------------ETSRELAERLAAKGVR 114 (163)
T ss_dssp -SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS--H-----------------------------HHHHHHHHHHHHTTEE
T ss_pred -cccchhhhhhhhhhHHhhccccceEEEecCCcch-----------------------------hhhhhhhhhhhhccce
Confidence 3443 566666 7778888877665432110 0345677888889976
Q ss_pred eeEE
Q 016981 313 DIKA 316 (379)
Q Consensus 313 ~v~~ 316 (379)
.++.
T Consensus 115 ~vda 118 (163)
T PF03446_consen 115 YVDA 118 (163)
T ss_dssp EEEE
T ss_pred eeee
Confidence 6655
No 427
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=77.53 E-value=4.2 Score=38.12 Aligned_cols=64 Identities=19% Similarity=0.208 Sum_probs=45.0
Q ss_pred EEEeCCcccHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCC-CCCcccEEEec
Q 016981 162 VVDVGCGIGGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF-PDGQFDLVWSM 233 (379)
Q Consensus 162 vLDiGcGtG~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fD~V~~~ 233 (379)
|+|+-||.|.+..-+.+. |.+ +.++|+++.+.+.-+.++. + .+..+|+.++.. .-..+|+++..
T Consensus 1 vidLF~G~GG~~~Gl~~a-G~~~~~a~e~~~~a~~ty~~N~~------~-~~~~~Di~~~~~~~~~~~dvl~gg 66 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA-GFKCVFASEIDKYAQKTYEANFG------N-KVPFGDITKISPSDIPDFDILLGG 66 (315)
T ss_pred CEEEecCccHHHHHHHHc-CCeEEEEEeCCHHHHHHHHHhCC------C-CCCccChhhhhhhhCCCcCEEEec
Confidence 689999999999888765 555 5579999999888777652 2 344567766531 11247888753
No 428
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=77.10 E-value=35 Score=30.80 Aligned_cols=75 Identities=15% Similarity=-0.012 Sum_probs=43.7
Q ss_pred CCEEEEeCCccc-HHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC----------CCC
Q 016981 159 PKNVVDVGCGIG-GSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPD 224 (379)
Q Consensus 159 ~~~vLDiGcGtG-~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~ 224 (379)
++++|=.|++.| ..+..+++.+ |++|+.++.+....+.+.+..... +.+.++.+|+.+.. -.-
T Consensus 6 ~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 82 (262)
T PRK07984 6 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQL---GSDIVLPCDVAEDASIDAMFAELGKVW 82 (262)
T ss_pred CCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhcc---CCceEeecCCCCHHHHHHHHHHHHhhc
Confidence 678888998752 4444444433 788988887643223333322221 24567778887631 012
Q ss_pred CcccEEEecccc
Q 016981 225 GQFDLVWSMESG 236 (379)
Q Consensus 225 ~~fD~V~~~~~l 236 (379)
+.+|+++.+-.+
T Consensus 83 g~iD~linnAg~ 94 (262)
T PRK07984 83 PKFDGFVHSIGF 94 (262)
T ss_pred CCCCEEEECCcc
Confidence 568999987654
No 429
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=76.94 E-value=12 Score=26.85 Aligned_cols=32 Identities=31% Similarity=0.578 Sum_probs=19.5
Q ss_pred CCEEEEeCCcccH-HHHHHHHHc--CCEEEEEeCC
Q 016981 159 PKNVVDVGCGIGG-SSRYLAKKF--GAKCQGITLS 190 (379)
Q Consensus 159 ~~~vLDiGcGtG~-~~~~l~~~~--~~~v~gvD~s 190 (379)
+++||-+||.+|. ++..++..+ ++..+||-..
T Consensus 39 pK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fE 73 (78)
T PF12242_consen 39 PKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFE 73 (78)
T ss_dssp -SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE--
T ss_pred CceEEEEecCCcccHHHHHHHHhcCCCCEEEEeec
Confidence 6899999999996 454455444 6788888664
No 430
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=76.81 E-value=18 Score=35.76 Aligned_cols=101 Identities=19% Similarity=0.206 Sum_probs=59.4
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEeCCcc-cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCC
Q 016981 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (379)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~vLDiGcGt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 218 (379)
..++.+++.-+. ...+++|+=+|+|. |......++.+|++|+++|.++.....+.. .| ..+ .++.
T Consensus 239 s~~d~~~R~~~~----~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~----~G----~~~--~~le 304 (476)
T PTZ00075 239 SLIDGIFRATDV----MIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAM----EG----YQV--VTLE 304 (476)
T ss_pred HHHHHHHHhcCC----CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHh----cC----cee--ccHH
Confidence 334555544332 23589999999996 443334444458899999988765433322 12 222 2222
Q ss_pred CCCCCCCcccEEEeccccCCCCCHHHHH-HHHHHhcCCCCEEEEEe
Q 016981 219 QQPFPDGQFDLVWSMESGEHMPDKSKFV-SELARVTAPAGTIIIVT 263 (379)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~~~~~l-~~~~r~LkpgG~l~i~~ 263 (379)
++ -...|+|+..-. . ..++ .+....+|||++|+-+.
T Consensus 305 el---l~~ADIVI~atG-----t-~~iI~~e~~~~MKpGAiLINvG 341 (476)
T PTZ00075 305 DV---VETADIFVTATG-----N-KDIITLEHMRRMKNNAIVGNIG 341 (476)
T ss_pred HH---HhcCCEEEECCC-----c-ccccCHHHHhccCCCcEEEEcC
Confidence 22 135799987532 1 2344 47788899999988765
No 431
>PRK07454 short chain dehydrogenase; Provisional
Probab=76.80 E-value=19 Score=31.74 Aligned_cols=75 Identities=16% Similarity=0.032 Sum_probs=49.7
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----CC-----CC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----DG 225 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~~ 225 (379)
.+++|-.|+ +|.++..+++.+ |.+|++++-++...+...+.....+ .++.++.+|+.+.. +. -+
T Consensus 6 ~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (241)
T PRK07454 6 MPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG--VKAAAYSIDLSNPEAIAPGIAELLEQFG 82 (241)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 567888885 566666666544 7899999998876665555444332 46888899987642 11 14
Q ss_pred cccEEEecccc
Q 016981 226 QFDLVWSMESG 236 (379)
Q Consensus 226 ~fD~V~~~~~l 236 (379)
..|+|+.+...
T Consensus 83 ~id~lv~~ag~ 93 (241)
T PRK07454 83 CPDVLINNAGM 93 (241)
T ss_pred CCCEEEECCCc
Confidence 57999876554
No 432
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=76.43 E-value=51 Score=30.01 Aligned_cols=89 Identities=24% Similarity=0.266 Sum_probs=59.2
Q ss_pred CCEEEEeCC--cccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEecccc
Q 016981 159 PKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (379)
Q Consensus 159 ~~~vLDiGc--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (379)
+.+||=.|+ +.|..+..+++..|.++++++.++...+.+++ .|.. ... .+..+. .++.+|+++-..
T Consensus 133 ~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~-~~~~~~--~~~~~d~vl~~~-- 200 (305)
T cd08270 133 GRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLRE----LGAA---EVV-VGGSEL--SGAPVDLVVDSV-- 200 (305)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCc---EEE-eccccc--cCCCceEEEECC--
Confidence 788888887 45667777787778899999988877777654 2321 111 111121 224688887531
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 237 EHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
.. ..+....+.|+++|+++....
T Consensus 201 ---g~--~~~~~~~~~l~~~G~~v~~g~ 223 (305)
T cd08270 201 ---GG--PQLARALELLAPGGTVVSVGS 223 (305)
T ss_pred ---Cc--HHHHHHHHHhcCCCEEEEEec
Confidence 11 357888999999999887753
No 433
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.42 E-value=30 Score=30.36 Aligned_cols=75 Identities=20% Similarity=0.179 Sum_probs=48.5
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEE-eCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----CC-----C
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGI-TLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----D 224 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gv-D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~ 224 (379)
+++||=.|+ +|.++..+++.+ |.+++.+ +-++...+.....+...+ .++.+..+|+.+.. +. -
T Consensus 5 ~~~ilI~Ga-sg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (247)
T PRK05565 5 GKVAIVTGA-SGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEG--GDAIAVKADVSSEEDVENLVEQIVEKF 81 (247)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 457777775 566666665544 7788888 888776665555544332 46888999987642 10 1
Q ss_pred CcccEEEecccc
Q 016981 225 GQFDLVWSMESG 236 (379)
Q Consensus 225 ~~fD~V~~~~~l 236 (379)
+.+|+|+.+...
T Consensus 82 ~~id~vi~~ag~ 93 (247)
T PRK05565 82 GKIDILVNNAGI 93 (247)
T ss_pred CCCCEEEECCCc
Confidence 368999876544
No 434
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=76.40 E-value=61 Score=29.55 Aligned_cols=94 Identities=23% Similarity=0.290 Sum_probs=60.2
Q ss_pred CCCEEEEeCC--cccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC-C-CCCCCcccEEEec
Q 016981 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-Q-PFPDGQFDLVWSM 233 (379)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~fD~V~~~ 233 (379)
++.+||=.|+ +.|..+..+++..|.+|++++.++...+.+++ .|. ..+-....+... + .. ...+|+|+..
T Consensus 142 ~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~-~~~~~~~~~~~~~i~~~-~~~~d~vl~~ 215 (320)
T cd08243 142 PGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLKE----LGA-DEVVIDDGAIAEQLRAA-PGGFDKVLEL 215 (320)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCC-cEEEecCccHHHHHHHh-CCCceEEEEC
Confidence 3788988885 46778888888888999999999877666543 232 111100001000 0 12 3568988743
Q ss_pred cccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
. . ...+.++.+.|+++|+++....
T Consensus 216 ~-----~--~~~~~~~~~~l~~~g~~v~~g~ 239 (320)
T cd08243 216 V-----G--TATLKDSLRHLRPGGIVCMTGL 239 (320)
T ss_pred C-----C--hHHHHHHHHHhccCCEEEEEcc
Confidence 2 1 2457888999999999887654
No 435
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=76.10 E-value=10 Score=36.08 Aligned_cols=94 Identities=17% Similarity=0.181 Sum_probs=58.9
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC----C-C-CCCCcccE
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ----Q-P-FPDGQFDL 229 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~----~-~-~~~~~fD~ 229 (379)
++.+||-.|+| .|..+..+++..|.. |++++.++...+.+++ .|. ..++...-.+ + . .+...+|+
T Consensus 182 ~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~----~g~---~~vv~~~~~~~~~~l~~~~~~~~vd~ 254 (363)
T cd08279 182 PGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARR----FGA---THTVNASEDDAVEAVRDLTDGRGADY 254 (363)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----hCC---eEEeCCCCccHHHHHHHHcCCCCCCE
Confidence 37888888875 466677777777775 9999998887776643 222 1111111111 0 0 12356898
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
|+.... . ...+..+.+.|+++|+++....
T Consensus 255 vld~~~-----~-~~~~~~~~~~l~~~G~~v~~g~ 283 (363)
T cd08279 255 AFEAVG-----R-AATIRQALAMTRKGGTAVVVGM 283 (363)
T ss_pred EEEcCC-----C-hHHHHHHHHHhhcCCeEEEEec
Confidence 874321 1 3567888999999999887654
No 436
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=75.95 E-value=40 Score=31.82 Aligned_cols=97 Identities=20% Similarity=0.255 Sum_probs=62.6
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc----cCCCC--CCCCCcccE
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVG----DALQQ--PFPDGQFDL 229 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~----d~~~~--~~~~~~fD~ 229 (379)
++.+|.-+|||. |..++.-++.. ..+++++|+++.-++.|++.-. ..++.. |+-+. ...++-.|.
T Consensus 185 ~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGA-------T~~vn~~~~~~vv~~i~~~T~gG~d~ 257 (366)
T COG1062 185 PGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGA-------THFVNPKEVDDVVEAIVELTDGGADY 257 (366)
T ss_pred CCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCC-------ceeecchhhhhHHHHHHHhcCCCCCE
Confidence 489999999985 65566666655 4589999999999999987421 223222 11110 122334555
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCC
Q 016981 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHR 267 (379)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 267 (379)
++ +...+ ...++.....+.++|..++......
T Consensus 258 ~~-----e~~G~-~~~~~~al~~~~~~G~~v~iGv~~~ 289 (366)
T COG1062 258 AF-----ECVGN-VEVMRQALEATHRGGTSVIIGVAGA 289 (366)
T ss_pred EE-----EccCC-HHHHHHHHHHHhcCCeEEEEecCCC
Confidence 53 22222 3478888888888999999875443
No 437
>PRK12742 oxidoreductase; Provisional
Probab=75.80 E-value=43 Score=29.26 Aligned_cols=97 Identities=22% Similarity=0.242 Sum_probs=52.9
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeC-CHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----C-CCCccc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITL-SPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-PDGQFD 228 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~-s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-~~~~fD 228 (379)
+++||=.|++.| ++..+++.+ |.+|+.+.. ++...+...+ .. ++.++..|+.+.. + ..+.+|
T Consensus 6 ~k~vlItGasgg-IG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~---~~----~~~~~~~D~~~~~~~~~~~~~~~~id 77 (237)
T PRK12742 6 GKKVLVLGGSRG-IGAAIVRRFVTDGANVRFTYAGSKDAAERLAQ---ET----GATAVQTDSADRDAVIDVVRKSGALD 77 (237)
T ss_pred CCEEEEECCCCh-HHHHHHHHHHHCCCEEEEecCCCHHHHHHHHH---Hh----CCeEEecCCCCHHHHHHHHHHhCCCc
Confidence 678888886444 444444433 678877654 3433332222 11 2456677775531 1 124689
Q ss_pred EEEeccccCCCCC-----H---H-----------HHHHHHHHhcCCCCEEEEEe
Q 016981 229 LVWSMESGEHMPD-----K---S-----------KFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 229 ~V~~~~~l~~~~~-----~---~-----------~~l~~~~r~LkpgG~l~i~~ 263 (379)
+++.+-......+ . . .++.++.+.++.+|.+++..
T Consensus 78 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 131 (237)
T PRK12742 78 ILVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIG 131 (237)
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 9887654432211 1 1 23356667777788877755
No 438
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=75.51 E-value=18 Score=32.27 Aligned_cols=75 Identities=19% Similarity=0.204 Sum_probs=51.5
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-C---------CCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-F---------PDG 225 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~---------~~~ 225 (379)
++++|=.| |+|.++..+++.+ |.+|+.++-+...++...+.+...+ .++.++.+|+.+.. . ..+
T Consensus 12 ~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~~~~~ 88 (259)
T PRK08213 12 GKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG--IDALWIAADVADEADIERLAEETLERFG 88 (259)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 67888888 4556666666554 7899999998887776666554433 36778899987632 1 014
Q ss_pred cccEEEecccc
Q 016981 226 QFDLVWSMESG 236 (379)
Q Consensus 226 ~fD~V~~~~~l 236 (379)
.+|.|+.+...
T Consensus 89 ~id~vi~~ag~ 99 (259)
T PRK08213 89 HVDILVNNAGA 99 (259)
T ss_pred CCCEEEECCCC
Confidence 68998876543
No 439
>PRK07063 short chain dehydrogenase; Provisional
Probab=75.41 E-value=18 Score=32.34 Aligned_cols=77 Identities=22% Similarity=0.192 Sum_probs=51.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----C-----CCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~ 225 (379)
++++|-.|++.| .+..+++.+ |.+|+.++.++..++...+.+.......++.++.+|+.+.. + .-+
T Consensus 7 ~k~vlVtGas~g-IG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 85 (260)
T PRK07063 7 GKVALVTGAAQG-IGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAFG 85 (260)
T ss_pred CCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 678998887654 344444433 78999999988877776666654222346888889987632 1 114
Q ss_pred cccEEEecccc
Q 016981 226 QFDLVWSMESG 236 (379)
Q Consensus 226 ~fD~V~~~~~l 236 (379)
..|.++.+...
T Consensus 86 ~id~li~~ag~ 96 (260)
T PRK07063 86 PLDVLVNNAGI 96 (260)
T ss_pred CCcEEEECCCc
Confidence 68998876554
No 440
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=75.40 E-value=27 Score=33.12 Aligned_cols=94 Identities=19% Similarity=0.220 Sum_probs=57.8
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC------CCCCCcccE
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ------PFPDGQFDL 229 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~~~~fD~ 229 (379)
++.+||=.|+| .|..+..+++..|.. +++++.++...+.+++ .+. ..++..+-... ......+|+
T Consensus 187 ~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~----~g~---~~v~~~~~~~~~~~l~~~~~~~~~d~ 259 (367)
T cd08263 187 PGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKE----LGA---THTVNAAKEDAVAAIREITGGRGVDV 259 (367)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCC---ceEecCCcccHHHHHHHHhCCCCCCE
Confidence 36778877764 455666777766777 9999999887776643 222 11111111110 112356898
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
|+.. +.. ...+.++.+.|+++|+++....
T Consensus 260 vld~-----vg~-~~~~~~~~~~l~~~G~~v~~g~ 288 (367)
T cd08263 260 VVEA-----LGK-PETFKLALDVVRDGGRAVVVGL 288 (367)
T ss_pred EEEe-----CCC-HHHHHHHHHHHhcCCEEEEEcc
Confidence 8743 222 1367888999999999887653
No 441
>PRK07985 oxidoreductase; Provisional
Probab=75.00 E-value=35 Score=31.39 Aligned_cols=102 Identities=19% Similarity=0.192 Sum_probs=58.4
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCH--HHHHHHHHHHHHcCCCCCeEEEEccCCCCC----------CC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSP--VQAQRANALAAARGLADKVSFQVGDALQQP----------FP 223 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~--~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~ 223 (379)
++++|-.|++.| ++..+++.+ |.+|+.++.+. ...+...+.....+ .++.++.+|+.+.. -.
T Consensus 49 ~k~vlITGas~g-IG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 125 (294)
T PRK07985 49 DRKALVTGGDSG-IGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECG--RKAVLLPGDLSDEKFARSLVHEAHKA 125 (294)
T ss_pred CCEEEEECCCCc-HHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 678999986544 444444433 78888876542 33444444443333 35778888987631 01
Q ss_pred CCcccEEEeccccCC----CCC-----H-----------HHHHHHHHHhcCCCCEEEEEe
Q 016981 224 DGQFDLVWSMESGEH----MPD-----K-----------SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 224 ~~~fD~V~~~~~l~~----~~~-----~-----------~~~l~~~~r~LkpgG~l~i~~ 263 (379)
-+..|+++.+..... +.+ + ..+++.+.+.++.+|.+++..
T Consensus 126 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iS 185 (294)
T PRK07985 126 LGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTS 185 (294)
T ss_pred hCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEEC
Confidence 246798887654321 111 1 135556666777788877754
No 442
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=74.92 E-value=38 Score=32.68 Aligned_cols=96 Identities=18% Similarity=0.139 Sum_probs=60.3
Q ss_pred EEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCC-eEEEEccCCCCCCCCCcccEEEeccccCCC
Q 016981 161 NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADK-VSFQVGDALQQPFPDGQFDLVWSMESGEHM 239 (379)
Q Consensus 161 ~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~-i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~ 239 (379)
+||=++=..|.++..++.. +. +.+-=|--.-...+++++.++++.. +.+. +..+ ++ .+.+|+|+.... -..
T Consensus 47 ~~~i~nd~fGal~~~l~~~-~~--~~~~ds~~~~~~~~~n~~~n~~~~~~~~~~--~~~~-~~-~~~~d~vl~~~P-K~~ 118 (378)
T PRK15001 47 PVLILNDAFGALSCALAEH-KP--YSIGDSYISELATRENLRLNGIDESSVKFL--DSTA-DY-PQQPGVVLIKVP-KTL 118 (378)
T ss_pred CEEEEcCchhHHHHHHHhC-CC--CeeehHHHHHHHHHHHHHHcCCCcccceee--cccc-cc-cCCCCEEEEEeC-CCH
Confidence 7999999999999999853 32 2332223333456677888877543 4444 2222 22 245898875321 111
Q ss_pred CCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 240 PDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 240 ~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
......|..+.++|.||+.+++...
T Consensus 119 ~~l~~~l~~l~~~l~~~~~ii~g~~ 143 (378)
T PRK15001 119 ALLEQQLRALRKVVTSDTRIIAGAK 143 (378)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEEEe
Confidence 2236678889999999999876653
No 443
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=74.82 E-value=20 Score=31.88 Aligned_cols=75 Identities=17% Similarity=0.164 Sum_probs=49.9
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----C-----CCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~ 225 (379)
+++||=.|++ |.++..+++.+ |.+|+.++-++..++...+.++..+ .++.++.+|+.+.. + .-+
T Consensus 11 ~k~ilItGas-~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 87 (256)
T PRK06124 11 GQVALVTGSA-RGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDAEHG 87 (256)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 7788888864 44455555443 7899999999877766665555443 36888888987631 0 124
Q ss_pred cccEEEecccc
Q 016981 226 QFDLVWSMESG 236 (379)
Q Consensus 226 ~fD~V~~~~~l 236 (379)
++|.|+.+...
T Consensus 88 ~id~vi~~ag~ 98 (256)
T PRK06124 88 RLDILVNNVGA 98 (256)
T ss_pred CCCEEEECCCC
Confidence 67888876544
No 444
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=74.70 E-value=13 Score=34.56 Aligned_cols=77 Identities=19% Similarity=0.277 Sum_probs=46.2
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-CC--CCcccEEEe
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FP--DGQFDLVWS 232 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~--~~~fD~V~~ 232 (379)
+++||-.| |+|..+..+++++ |.+|++++.++.............+...++.++.+|+.+.. +. -...|+|+.
T Consensus 5 ~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih 83 (325)
T PLN02989 5 GKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFH 83 (325)
T ss_pred CCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEE
Confidence 67888887 5677777777655 67888876665433332222221222246888999987642 10 124788876
Q ss_pred cccc
Q 016981 233 MESG 236 (379)
Q Consensus 233 ~~~l 236 (379)
....
T Consensus 84 ~A~~ 87 (325)
T PLN02989 84 TASP 87 (325)
T ss_pred eCCC
Confidence 6543
No 445
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=74.54 E-value=34 Score=31.99 Aligned_cols=95 Identities=16% Similarity=0.086 Sum_probs=58.8
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC------CCCCCcccE
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ------PFPDGQFDL 229 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~~~~fD~ 229 (379)
++.+||-.|+|. |..+..+++..|. .|++++.++...+.+++ .|.. .++...-.+. ......+|+
T Consensus 163 ~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----lg~~---~~~~~~~~~~~~~~~~~~~~~~~d~ 235 (341)
T PRK05396 163 VGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARK----MGAT---RAVNVAKEDLRDVMAELGMTEGFDV 235 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCCc---EEecCccccHHHHHHHhcCCCCCCE
Confidence 377888777764 6667777877777 68888888877666554 2321 1111110110 012346888
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
|+.... ....+..+.+.|+++|.++.....
T Consensus 236 v~d~~g------~~~~~~~~~~~l~~~G~~v~~g~~ 265 (341)
T PRK05396 236 GLEMSG------APSAFRQMLDNMNHGGRIAMLGIP 265 (341)
T ss_pred EEECCC------CHHHHHHHHHHHhcCCEEEEEecC
Confidence 875321 145678889999999999888643
No 446
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=74.39 E-value=45 Score=31.19 Aligned_cols=94 Identities=27% Similarity=0.345 Sum_probs=56.4
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-CCCCCcccEEEeccc
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLVWSMES 235 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~V~~~~~ 235 (379)
++.+||=.||| .|..+..+++..|.++++++.++...+.+++ .+. . .++...-... ....+.+|+|+....
T Consensus 169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~----~g~-~--~vi~~~~~~~~~~~~~~~d~v~~~~g 241 (337)
T cd05283 169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALK----LGA-D--EFIATKDPEAMKKAAGSLDLIIDTVS 241 (337)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----cCC-c--EEecCcchhhhhhccCCceEEEECCC
Confidence 36777777774 3555666677668899999999887777643 221 1 1111110010 001356888874321
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 236 GEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
. ...+..+.+.|+++|+++....
T Consensus 242 -----~-~~~~~~~~~~l~~~G~~v~~g~ 264 (337)
T cd05283 242 -----A-SHDLDPYLSLLKPGGTLVLVGA 264 (337)
T ss_pred -----C-cchHHHHHHHhcCCCEEEEEec
Confidence 1 1246778899999999887754
No 447
>PRK06914 short chain dehydrogenase; Provisional
Probab=74.39 E-value=20 Score=32.39 Aligned_cols=77 Identities=17% Similarity=0.143 Sum_probs=48.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-C--------CCCc
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-F--------PDGQ 226 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~--------~~~~ 226 (379)
+.++|-.|++. .++..+++.+ |.+|++++-++...+...+.....+...++.++.+|+.+.. . .-+.
T Consensus 3 ~k~~lItGasg-~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 81 (280)
T PRK06914 3 KKIAIVTGASS-GFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR 81 (280)
T ss_pred CCEEEEECCCc-hHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence 45788888544 4444444433 78999999887766655544444333346888899987642 1 0145
Q ss_pred ccEEEecccc
Q 016981 227 FDLVWSMESG 236 (379)
Q Consensus 227 fD~V~~~~~l 236 (379)
.|.|+.+...
T Consensus 82 id~vv~~ag~ 91 (280)
T PRK06914 82 IDLLVNNAGY 91 (280)
T ss_pred eeEEEECCcc
Confidence 7888876543
No 448
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=73.99 E-value=11 Score=32.01 Aligned_cols=96 Identities=25% Similarity=0.322 Sum_probs=56.1
Q ss_pred EEEEeCCcccH--HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH-------cC-C--------CCCeEEEEccCCCCCC
Q 016981 161 NVVDVGCGIGG--SSRYLAKKFGAKCQGITLSPVQAQRANALAAA-------RG-L--------ADKVSFQVGDALQQPF 222 (379)
Q Consensus 161 ~vLDiGcGtG~--~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~-------~~-~--------~~~i~~~~~d~~~~~~ 222 (379)
+|-=+|+|+=. ++..++.. |.+|+.+|.+++.++.+++++.. .+ + ..++.+ ..|+.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~dl~~~-- 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTDLEEA-- 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESSGGGG--
T ss_pred CEEEEcCCHHHHHHHHHHHhC-CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccCHHHH--
Confidence 35567777522 33333433 89999999999999988877654 11 1 123443 3344332
Q ss_pred CCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 223 PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 223 ~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
...|+|+=. +.+.++-..++++++.+++.|+-.|.-.+
T Consensus 77 --~~adlViEa-i~E~l~~K~~~~~~l~~~~~~~~ilasnT 114 (180)
T PF02737_consen 77 --VDADLVIEA-IPEDLELKQELFAELDEICPPDTILASNT 114 (180)
T ss_dssp --CTESEEEE--S-SSHHHHHHHHHHHHCCS-TTSEEEE--
T ss_pred --hhhheehhh-ccccHHHHHHHHHHHHHHhCCCceEEecC
Confidence 146777633 23444445889999999999998876654
No 449
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=73.85 E-value=50 Score=30.01 Aligned_cols=102 Identities=16% Similarity=0.127 Sum_probs=59.0
Q ss_pred CCEEEEeCCcc-cHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC----------CCC
Q 016981 159 PKNVVDVGCGI-GGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPD 224 (379)
Q Consensus 159 ~~~vLDiGcGt-G~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~ 224 (379)
++.+|=.|+++ +..+..+++.+ |++|+.++.+....+.+++.....+ .. .++.+|+.+.. -..
T Consensus 5 ~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~--~~-~~~~~Dv~d~~~v~~~~~~i~~~~ 81 (274)
T PRK08415 5 GKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELG--SD-YVYELDVSKPEHFKSLAESLKKDL 81 (274)
T ss_pred CcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHc
Confidence 67889889862 34455555444 7899988887543333333333322 23 46778887642 012
Q ss_pred CcccEEEeccccCC-------CCC--H--------------HHHHHHHHHhcCCCCEEEEEe
Q 016981 225 GQFDLVWSMESGEH-------MPD--K--------------SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 225 ~~fD~V~~~~~l~~-------~~~--~--------------~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+.+|+++.+-.+.. +.+ . ..+.+.+...++.+|.++...
T Consensus 82 g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~is 143 (274)
T PRK08415 82 GKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLS 143 (274)
T ss_pred CCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEe
Confidence 67899987765421 111 1 124455667777788877654
No 450
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=73.62 E-value=39 Score=31.71 Aligned_cols=94 Identities=21% Similarity=0.262 Sum_probs=58.4
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC----C-CCCCCcccEE
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ----Q-PFPDGQFDLV 230 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~----~-~~~~~~fD~V 230 (379)
++.+||-.|+| .|..+..+++..|. .|++++.++...+.+++ .|. . .++...-.. + ....+.+|+|
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~--~-~~~~~~~~~~~~~~~~~~~~~~d~v 247 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA----AGA--D-VVVNGSDPDAAKRIIKAAGGGVDAV 247 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCC--c-EEecCCCccHHHHHHHHhCCCCcEE
Confidence 37888888875 35666777777777 79999998888777644 222 1 111111001 0 0112258888
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+.... . ...+..+.+.|+++|+++....
T Consensus 248 id~~g-----~-~~~~~~~~~~l~~~g~~v~~g~ 275 (350)
T cd08240 248 IDFVN-----N-SATASLAFDILAKGGKLVLVGL 275 (350)
T ss_pred EECCC-----C-HHHHHHHHHHhhcCCeEEEECC
Confidence 74311 1 3468889999999999987654
No 451
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=73.37 E-value=21 Score=31.75 Aligned_cols=76 Identities=16% Similarity=0.118 Sum_probs=51.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----C-----CCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~ 225 (379)
+++||=.|+ +|.++..+++++ |.+|++++-++..++...+.+...+ .++.++.+|+.+.. + .-+
T Consensus 10 ~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (255)
T PRK07523 10 GRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG--LSAHALAFDVTDHDAVRAAIDAFEAEIG 86 (255)
T ss_pred CCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--ceEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 678898885 556666665544 7899999999877766666555433 35778888887631 1 124
Q ss_pred cccEEEeccccC
Q 016981 226 QFDLVWSMESGE 237 (379)
Q Consensus 226 ~fD~V~~~~~l~ 237 (379)
..|.|+.+....
T Consensus 87 ~~d~li~~ag~~ 98 (255)
T PRK07523 87 PIDILVNNAGMQ 98 (255)
T ss_pred CCCEEEECCCCC
Confidence 589888766543
No 452
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=73.33 E-value=4.9 Score=36.97 Aligned_cols=67 Identities=18% Similarity=0.225 Sum_probs=41.6
Q ss_pred CCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHH
Q 016981 224 DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYV 303 (379)
Q Consensus 224 ~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (379)
.+.||+|+......|+-.+. +.++++|||.|++-..-. .-.+.+.. ... -.+.+.
T Consensus 220 ~~~Fd~ifvs~s~vh~L~p~-----l~~~~a~~A~LvvEtaKf------mvdLrKEq---~~~-----------F~~kv~ 274 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLKPE-----LFQALAPDAVLVVETAKF------MVDLRKEQ---LQE-----------FVKKVK 274 (289)
T ss_pred cCCCCEEEEhhhhHhhcchH-----HHHHhCCCCEEEEEcchh------heeCCHHH---HHH-----------HHHHHH
Confidence 36799999877665553333 778899999988855200 00111111 111 146788
Q ss_pred HHHHhCCCceeE
Q 016981 304 KLLQSLSLEDIK 315 (379)
Q Consensus 304 ~~l~~aGF~~v~ 315 (379)
++++++||+.+.
T Consensus 275 eLA~~aG~~p~~ 286 (289)
T PF14740_consen 275 ELAKAAGFKPVT 286 (289)
T ss_pred HHHHHCCCcccc
Confidence 999999998653
No 453
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=73.19 E-value=16 Score=33.93 Aligned_cols=97 Identities=16% Similarity=0.097 Sum_probs=56.6
Q ss_pred CCEEEEeCCcc--cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC----CCeEEEEccCCCCCCCCCcccEEEe
Q 016981 159 PKNVVDVGCGI--GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLA----DKVSFQVGDALQQPFPDGQFDLVWS 232 (379)
Q Consensus 159 ~~~vLDiGcGt--G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~----~~i~~~~~d~~~~~~~~~~fD~V~~ 232 (379)
.++|+=+|+|. |.++..|++. |..|+.++-+...++..++. .|+. ........... .+-..+.||+|+.
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~-G~~V~lv~r~~~~~~~i~~~---~Gl~i~~~g~~~~~~~~~~-~~~~~~~~D~viv 76 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARA-GLPVRLILRDRQRLAAYQQA---GGLTLVEQGQASLYAIPAE-TADAAEPIHRLLL 76 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhC-CCCeEEEEechHHHHHHhhc---CCeEEeeCCcceeeccCCC-CcccccccCEEEE
Confidence 35799999984 4456666664 77899999887655554431 1110 00001000000 1112357998875
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
.-=-+ +...+++.+...+.++..++...
T Consensus 77 ~vK~~---~~~~al~~l~~~l~~~t~vv~lQ 104 (305)
T PRK05708 77 ACKAY---DAEPAVASLAHRLAPGAELLLLQ 104 (305)
T ss_pred ECCHH---hHHHHHHHHHhhCCCCCEEEEEe
Confidence 42222 34778889999999998776654
No 454
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=73.17 E-value=13 Score=34.26 Aligned_cols=89 Identities=24% Similarity=0.176 Sum_probs=54.2
Q ss_pred CCEEEEeCCcc--cHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE-ccCCCCCCCCCcccEEEecc
Q 016981 159 PKNVVDVGCGI--GGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQV-GDALQQPFPDGQFDLVWSME 234 (379)
Q Consensus 159 ~~~vLDiGcGt--G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~fD~V~~~~ 234 (379)
..+|+=+|.|- |.+++.+.+.. ...++|.|.+...++.+.+. | +.... .+... ......|+|+..-
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l----g----v~d~~~~~~~~--~~~~~aD~Vivav 72 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL----G----VIDELTVAGLA--EAAAEADLVIVAV 72 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc----C----cccccccchhh--hhcccCCEEEEec
Confidence 45677788773 45566666654 34679999998887776542 2 22211 11101 1134579998754
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCCEEE
Q 016981 235 SGEHMPDKSKFVSELARVTAPAGTII 260 (379)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~ 260 (379)
-+.. ...+++++...|++|..+.
T Consensus 73 Pi~~---~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 73 PIEA---TEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred cHHH---HHHHHHHhcccCCCCCEEE
Confidence 4433 3778888888888887654
No 455
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=73.03 E-value=51 Score=31.41 Aligned_cols=98 Identities=24% Similarity=0.217 Sum_probs=60.2
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-------CCCCCccc
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-------PFPDGQFD 228 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-------~~~~~~fD 228 (379)
++.+||=.|+| .|..+..+++..|. .++++|.++...+.+++ .|. ..+ +..+. .+..+.+|
T Consensus 176 ~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~----~g~----~~v--~~~~~~~~~~i~~~~~~~~d 245 (375)
T cd08282 176 PGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAES----IGA----IPI--DFSDGDPVEQILGLEPGGVD 245 (375)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCC----eEe--ccCcccHHHHHHHhhCCCCC
Confidence 37788888876 36666777776676 79999998877776654 221 111 21110 11124588
Q ss_pred EEEeccccCCC-----CCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 229 LVWSMESGEHM-----PDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 229 ~V~~~~~l~~~-----~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
+|+-...-.-. .+....+.++.++|+++|.+.+....
T Consensus 246 ~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g~~ 287 (375)
T cd08282 246 RAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIVGVY 287 (375)
T ss_pred EEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEEecc
Confidence 88754221110 12345688999999999999776543
No 456
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=72.77 E-value=39 Score=30.76 Aligned_cols=93 Identities=19% Similarity=0.211 Sum_probs=58.2
Q ss_pred CCCEEEEeCC--cccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-----C-CCCCcccE
Q 016981 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----P-FPDGQFDL 229 (379)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~-~~~~~fD~ 229 (379)
++.+||-.|| +.|..+..+++..|..|++++.++...+.+++ .+. . .+...+-.+. . .....+|+
T Consensus 139 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~--~-~~~~~~~~~~~~~i~~~~~~~~~d~ 211 (323)
T cd08241 139 PGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARA----LGA--D-HVIDYRDPDLRERVKALTGGRGVDV 211 (323)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHH----cCC--c-eeeecCCccHHHHHHHHcCCCCcEE
Confidence 3789999998 35566667777668899999999887776643 222 1 1111111111 0 12345888
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
++.... ...+..+.+.++++|.++....
T Consensus 212 v~~~~g-------~~~~~~~~~~~~~~g~~v~~~~ 239 (323)
T cd08241 212 VYDPVG-------GDVFEASLRSLAWGGRLLVIGF 239 (323)
T ss_pred EEECcc-------HHHHHHHHHhhccCCEEEEEcc
Confidence 875422 1346677889999999887654
No 457
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=72.60 E-value=1e+02 Score=30.24 Aligned_cols=130 Identities=22% Similarity=0.298 Sum_probs=82.0
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCC----CCCCCEEEEeC-Cccc------HHHHHHHHHc-CCEEEEEeC-CHHHHHHHHH
Q 016981 133 DHRAAQVRMIEETLRFAGVSEDP----TKRPKNVVDVG-CGIG------GSSRYLAKKF-GAKCQGITL-SPVQAQRANA 199 (379)
Q Consensus 133 ~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~vLDiG-cGtG------~~~~~l~~~~-~~~v~gvD~-s~~~~~~a~~ 199 (379)
+.+....-..++++..++-...+ .+++..||=+| =|+| -++.++.++. ..-+++.|. -|.++++.+.
T Consensus 70 p~q~~iKiV~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~ 149 (451)
T COG0541 70 PGQQFIKIVYEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQ 149 (451)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHH
Confidence 35556666778888888742211 23567888887 2444 3455555532 234677785 4677888888
Q ss_pred HHHHcCCCCCeEEEEccCCCCC----------CCCCcccEEEecccc-CCCC-CHHHHHHHHHHhcCCCCEEEEEeccC
Q 016981 200 LAAARGLADKVSFQVGDALQQP----------FPDGQFDLVWSMESG-EHMP-DKSKFVSELARVTAPAGTIIIVTWCH 266 (379)
Q Consensus 200 ~~~~~~~~~~i~~~~~d~~~~~----------~~~~~fD~V~~~~~l-~~~~-~~~~~l~~~~r~LkpgG~l~i~~~~~ 266 (379)
.....+ +.|+..+....| +....||+|+.--.= +|+. +.-.-+.++.++++|.=.|++.|-..
T Consensus 150 La~q~~----v~~f~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~ 224 (451)
T COG0541 150 LAEQVG----VPFFGSGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMI 224 (451)
T ss_pred HHHHcC----CceecCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEeccc
Confidence 777654 445554433333 235679999875444 3332 22456778899999999999988543
No 458
>PRK08703 short chain dehydrogenase; Provisional
Probab=72.54 E-value=23 Score=31.11 Aligned_cols=75 Identities=16% Similarity=0.194 Sum_probs=45.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC---C----------
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---F---------- 222 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~---------- 222 (379)
+++||=.|++ |.++..+++.+ |.+|++++-++...+.....+...+- ..+.+...|+.+.. +
T Consensus 6 ~k~vlItG~s-ggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~i~~~ 83 (239)
T PRK08703 6 DKTILVTGAS-QGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGH-PEPFAIRFDLMSAEEKEFEQFAATIAEA 83 (239)
T ss_pred CCEEEEECCC-CcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCC-CCcceEEeeecccchHHHHHHHHHHHHH
Confidence 6789999964 44555555444 78999999998776665555543322 24556666664311 0
Q ss_pred CCCcccEEEeccc
Q 016981 223 PDGQFDLVWSMES 235 (379)
Q Consensus 223 ~~~~fD~V~~~~~ 235 (379)
..+.+|.|+.+..
T Consensus 84 ~~~~id~vi~~ag 96 (239)
T PRK08703 84 TQGKLDGIVHCAG 96 (239)
T ss_pred hCCCCCEEEEecc
Confidence 0146798886654
No 459
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=72.46 E-value=60 Score=29.90 Aligned_cols=93 Identities=18% Similarity=0.177 Sum_probs=57.3
Q ss_pred CCCEEEEeCCc--ccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCC--C-C--CCCCCcccEE
Q 016981 158 RPKNVVDVGCG--IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL--Q-Q--PFPDGQFDLV 230 (379)
Q Consensus 158 ~~~~vLDiGcG--tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~--~-~--~~~~~~fD~V 230 (379)
++.+||-.|.+ .|..+..++...|.+++.++.++...+.++. .+. ...+...+.. . + ......+|++
T Consensus 166 ~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~ 239 (342)
T cd08266 166 PGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKE----LGA--DYVIDYRKEDFVREVRELTGKRGVDVV 239 (342)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCC--CeEEecCChHHHHHHHHHhCCCCCcEE
Confidence 37788888875 4566666777668899999998877666543 222 1111111100 0 0 0123468988
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+.... ...+.++.+.|+++|.++...
T Consensus 240 i~~~g-------~~~~~~~~~~l~~~G~~v~~~ 265 (342)
T cd08266 240 VEHVG-------AATWEKSLKSLARGGRLVTCG 265 (342)
T ss_pred EECCc-------HHHHHHHHHHhhcCCEEEEEe
Confidence 76432 235677788999999988765
No 460
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=72.45 E-value=57 Score=29.05 Aligned_cols=100 Identities=15% Similarity=0.101 Sum_probs=57.8
Q ss_pred CCEEEEeCCcc-cHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----C-----CC
Q 016981 159 PKNVVDVGCGI-GGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PD 224 (379)
Q Consensus 159 ~~~vLDiGcGt-G~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~ 224 (379)
++++|-.|.++ +..+..+++.+ |.+|+.++-+....+.+++. . ..++.++.+|+.+.. + .-
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~----~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 81 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKL----V-DEEDLLVECDVASDESIERAFATIKERV 81 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhh----c-cCceeEEeCCCCCHHHHHHHHHHHHHHh
Confidence 67899888763 34455555444 78999887764322222221 1 135778888987631 0 12
Q ss_pred CcccEEEeccccCC-------CCC-----H-----------HHHHHHHHHhcCCCCEEEEEe
Q 016981 225 GQFDLVWSMESGEH-------MPD-----K-----------SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 225 ~~fD~V~~~~~l~~-------~~~-----~-----------~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+.+|+++.+-.+.. +.+ + ..+.+.+...|+.+|.++...
T Consensus 82 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~is 143 (252)
T PRK06079 82 GKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLT 143 (252)
T ss_pred CCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEe
Confidence 56899987654432 111 1 123455667777788776654
No 461
>PRK08177 short chain dehydrogenase; Provisional
Probab=72.45 E-value=30 Score=30.10 Aligned_cols=67 Identities=18% Similarity=0.225 Sum_probs=40.2
Q ss_pred EEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC--------CCCCcccE
Q 016981 161 NVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQFDL 229 (379)
Q Consensus 161 ~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~fD~ 229 (379)
+||=.|+ +|.++..+++.+ |.+|++++.++...+.+++ . .++.+..+|+.+.. +..+.+|+
T Consensus 3 ~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~----~---~~~~~~~~D~~d~~~~~~~~~~~~~~~id~ 74 (225)
T PRK08177 3 TALIIGA-SRGLGLGLVDRLLERGWQVTATVRGPQQDTALQA----L---PGVHIEKLDMNDPASLDQLLQRLQGQRFDL 74 (225)
T ss_pred EEEEeCC-CchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHh----c---cccceEEcCCCCHHHHHHHHHHhhcCCCCE
Confidence 5666665 455555444444 7899999988755443322 1 24667777876531 22346899
Q ss_pred EEeccc
Q 016981 230 VWSMES 235 (379)
Q Consensus 230 V~~~~~ 235 (379)
|+.+..
T Consensus 75 vi~~ag 80 (225)
T PRK08177 75 LFVNAG 80 (225)
T ss_pred EEEcCc
Confidence 887643
No 462
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=72.35 E-value=33 Score=32.63 Aligned_cols=97 Identities=16% Similarity=0.211 Sum_probs=57.7
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc--cCCC-C-CCCCCcccEEE
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVG--DALQ-Q-PFPDGQFDLVW 231 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~--d~~~-~-~~~~~~fD~V~ 231 (379)
++.+||=.|+| .|..+..+++..|. .|++++.++...+.+++ .|...-+..... +... + ....+.+|+|+
T Consensus 183 ~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~l~~~~~~~~d~vi 258 (365)
T cd05279 183 PGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQ----LGATECINPRDQDKPIVEVLTEMTDGGVDYAF 258 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCCeecccccccchHHHHHHHHhCCCCcEEE
Confidence 37888888875 34556667776676 48899988888777744 222111111111 1000 0 01124689887
Q ss_pred eccccCCCCCHHHHHHHHHHhcC-CCCEEEEEec
Q 016981 232 SMESGEHMPDKSKFVSELARVTA-PAGTIIIVTW 264 (379)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~r~Lk-pgG~l~i~~~ 264 (379)
-.. .. ...+..+.+.|+ ++|+++....
T Consensus 259 d~~-----g~-~~~~~~~~~~l~~~~G~~v~~g~ 286 (365)
T cd05279 259 EVI-----GS-ADTLKQALDATRLGGGTSVVVGV 286 (365)
T ss_pred ECC-----CC-HHHHHHHHHHhccCCCEEEEEec
Confidence 432 11 356778889999 9999987754
No 463
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=72.29 E-value=9.7 Score=35.34 Aligned_cols=75 Identities=9% Similarity=0.051 Sum_probs=51.7
Q ss_pred EEEeCCcccHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-------CCCCcccEEEec
Q 016981 162 VVDVGCGIGGSSRYLA-KKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-------FPDGQFDLVWSM 233 (379)
Q Consensus 162 vLDiGcGtG~~~~~l~-~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~~fD~V~~~ 233 (379)
-+|||.|+-..--.+. .+++...+++|++...+..|.++..++++...+.++.....+.- .++..||++.|+
T Consensus 106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcN 185 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCN 185 (419)
T ss_pred eeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecC
Confidence 4788877654332232 23367899999999999999999999888877777766443211 123458888887
Q ss_pred ccc
Q 016981 234 ESG 236 (379)
Q Consensus 234 ~~l 236 (379)
--+
T Consensus 186 PPF 188 (419)
T KOG2912|consen 186 PPF 188 (419)
T ss_pred Cch
Confidence 543
No 464
>PRK09291 short chain dehydrogenase; Provisional
Probab=72.17 E-value=24 Score=31.31 Aligned_cols=74 Identities=20% Similarity=0.160 Sum_probs=47.4
Q ss_pred CEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC----CCCCcccEEEe
Q 016981 160 KNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVWS 232 (379)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~V~~ 232 (379)
.+||=.|++. .++..+++.+ |.+|++++-++...+..+......+ .++.++.+|+.+.. ......|+|+.
T Consensus 3 ~~vlVtGasg-~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~id~vi~ 79 (257)
T PRK09291 3 KTILITGAGS-GFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRG--LALRVEKLDLTDAIDRAQAAEWDVDVLLN 79 (257)
T ss_pred CEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcceEEEeeCCCHHHHHHHhcCCCCEEEE
Confidence 4688788754 4455554433 7899999988776665555444433 35788888887642 11346899987
Q ss_pred cccc
Q 016981 233 MESG 236 (379)
Q Consensus 233 ~~~l 236 (379)
+...
T Consensus 80 ~ag~ 83 (257)
T PRK09291 80 NAGI 83 (257)
T ss_pred CCCc
Confidence 6543
No 465
>PRK07814 short chain dehydrogenase; Provisional
Probab=72.11 E-value=25 Score=31.58 Aligned_cols=74 Identities=19% Similarity=0.152 Sum_probs=49.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-C----C-----CC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-F----P-----DG 225 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~----~-----~~ 225 (379)
+.++|=.|+ +|.++..+++.+ |.+|++++-++..++...+.+...+ .++.++.+|+.+.. . . -+
T Consensus 10 ~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (263)
T PRK07814 10 DQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAG--RRAHVVAADLAHPEATAGLAGQAVEAFG 86 (263)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 678888885 555555555544 7899999998877666555554333 46788888987642 1 0 14
Q ss_pred cccEEEeccc
Q 016981 226 QFDLVWSMES 235 (379)
Q Consensus 226 ~fD~V~~~~~ 235 (379)
.+|+|+.+-.
T Consensus 87 ~id~vi~~Ag 96 (263)
T PRK07814 87 RLDIVVNNVG 96 (263)
T ss_pred CCCEEEECCC
Confidence 6899886543
No 466
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=72.05 E-value=30 Score=31.68 Aligned_cols=93 Identities=20% Similarity=0.274 Sum_probs=54.9
Q ss_pred CEEEEeCCcc--cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH-------HHcCC-C--------CCeEEEEccCCCCC
Q 016981 160 KNVVDVGCGI--GGSSRYLAKKFGAKCQGITLSPVQAQRANALA-------AARGL-A--------DKVSFQVGDALQQP 221 (379)
Q Consensus 160 ~~vLDiGcGt--G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~-------~~~~~-~--------~~i~~~~~d~~~~~ 221 (379)
.+|-=||+|. +.++..++.. |.+|+++|.++..++.+++++ .+.+. . .++.+ ..|...
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~-g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~-- 79 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA-GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD-- 79 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC-CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH--
Confidence 3577788874 3445555554 779999999999987665432 22221 0 02222 223221
Q ss_pred CCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEE
Q 016981 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTI 259 (379)
Q Consensus 222 ~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l 259 (379)
-...|+|+.. +...+.-...++.++.+.++|+..+
T Consensus 80 --~~~aDlVi~a-v~e~~~~k~~~~~~l~~~~~~~~il 114 (282)
T PRK05808 80 --LKDADLVIEA-ATENMDLKKKIFAQLDEIAKPEAIL 114 (282)
T ss_pred --hccCCeeeec-ccccHHHHHHHHHHHHhhCCCCcEE
Confidence 2446888753 2222222358899999999998766
No 467
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=71.99 E-value=22 Score=32.85 Aligned_cols=94 Identities=15% Similarity=0.140 Sum_probs=59.0
Q ss_pred CCEEEEeCC--cccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccC--CCC-CCCCCcccEEEec
Q 016981 159 PKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA--LQQ-PFPDGQFDLVWSM 233 (379)
Q Consensus 159 ~~~vLDiGc--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~--~~~-~~~~~~fD~V~~~ 233 (379)
+.+||=.|+ +.|..+..+++..|.+|+.++.++...+.+++ .|. ..+ +...+. ... ......+|+|+-.
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~-~~v-~~~~~~~~~~~~~~~~~~~d~vld~ 220 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLKK----LGA-KEV-IPREELQEESIKPLEKQRWAGAVDP 220 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHHH----cCC-CEE-EcchhHHHHHHHhhccCCcCEEEEC
Confidence 568888886 35667777888778899999999887776643 232 111 101110 000 1123458887643
Q ss_pred cccCCCCCHHHHHHHHHHhcCCCCEEEEEecc
Q 016981 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (379)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 265 (379)
. . ...+....+.|+++|+++.....
T Consensus 221 ~-----g--~~~~~~~~~~l~~~G~~i~~g~~ 245 (326)
T cd08289 221 V-----G--GKTLAYLLSTLQYGGSVAVSGLT 245 (326)
T ss_pred C-----c--HHHHHHHHHHhhcCCEEEEEeec
Confidence 1 2 24577889999999999887643
No 468
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=71.92 E-value=15 Score=33.72 Aligned_cols=84 Identities=21% Similarity=0.148 Sum_probs=48.8
Q ss_pred EEEEeCCcc--cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 016981 161 NVVDVGCGI--GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (379)
Q Consensus 161 ~vLDiGcGt--G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (379)
+|.=||+|. |.++..+.+. |.+|+++|.++..++.+.+. +. +.....+.+ .-...|+|+..-....
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~-g~~V~~~d~~~~~~~~a~~~----g~---~~~~~~~~~----~~~~aDlVilavp~~~ 69 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL-GHTVYGVSRRESTCERAIER----GL---VDEASTDLS----LLKDCDLVILALPIGL 69 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHC----CC---cccccCCHh----HhcCCCEEEEcCCHHH
Confidence 466677764 3455555554 67999999999887776542 21 111111111 1245788886543222
Q ss_pred CCCHHHHHHHHHHhcCCCCEE
Q 016981 239 MPDKSKFVSELARVTAPAGTI 259 (379)
Q Consensus 239 ~~~~~~~l~~~~r~LkpgG~l 259 (379)
..++++++...++|+..+
T Consensus 70 ---~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 70 ---LLPPSEQLIPALPPEAIV 87 (279)
T ss_pred ---HHHHHHHHHHhCCCCcEE
Confidence 256778888888877443
No 469
>PRK06114 short chain dehydrogenase; Provisional
Probab=71.85 E-value=72 Score=28.29 Aligned_cols=76 Identities=16% Similarity=0.146 Sum_probs=46.6
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHH-HHHHHHHHHHHcCCCCCeEEEEccCCCCC-----C-----CC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPV-QAQRANALAAARGLADKVSFQVGDALQQP-----F-----PD 224 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~ 224 (379)
++++|=.|++ |.++..+++++ |.+|+.++.+.. .++...+.+...+ .++.++.+|+.+.. + .-
T Consensus 8 ~k~~lVtG~s-~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~ 84 (254)
T PRK06114 8 GQVAFVTGAG-SGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAG--RRAIQIAADVTSKADLRAAVARTEAEL 84 (254)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 6678877754 44566655544 789999987642 3344434444333 36778888886531 0 12
Q ss_pred CcccEEEeccccC
Q 016981 225 GQFDLVWSMESGE 237 (379)
Q Consensus 225 ~~fD~V~~~~~l~ 237 (379)
+..|.++.+....
T Consensus 85 g~id~li~~ag~~ 97 (254)
T PRK06114 85 GALTLAVNAAGIA 97 (254)
T ss_pred CCCCEEEECCCCC
Confidence 5679998776553
No 470
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=71.71 E-value=29 Score=32.48 Aligned_cols=97 Identities=16% Similarity=0.167 Sum_probs=59.0
Q ss_pred CCCEEEEeCCc-ccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE-ccCCC-C-CCCCCcccEEEec
Q 016981 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV-GDALQ-Q-PFPDGQFDLVWSM 233 (379)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~-~-~~~~~~fD~V~~~ 233 (379)
++.+||=.|+| .|..+..+++..|.+|++++-+++..+.+++ .|...-+.... .+... + .+..+.+|+|+..
T Consensus 165 ~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~~~~~~~~~~~d~vi~~ 240 (345)
T cd08260 165 PGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELARE----LGAVATVNASEVEDVAAAVRDLTGGGAHVSVDA 240 (345)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH----hCCCEEEccccchhHHHHHHHHhCCCCCEEEEc
Confidence 37788888864 3556667777778899999999888777643 23210011111 11100 0 1112268988753
Q ss_pred cccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
- . . ...+..+.+.|+++|.++....
T Consensus 241 ~--g---~-~~~~~~~~~~l~~~g~~i~~g~ 265 (345)
T cd08260 241 L--G---I-PETCRNSVASLRKRGRHVQVGL 265 (345)
T ss_pred C--C---C-HHHHHHHHHHhhcCCEEEEeCC
Confidence 1 1 1 3467788999999999887653
No 471
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=71.64 E-value=33 Score=31.06 Aligned_cols=91 Identities=18% Similarity=0.189 Sum_probs=54.7
Q ss_pred CCCEEEEeCC--cccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC--CCCCCcccEEEec
Q 016981 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDGQFDLVWSM 233 (379)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~V~~~ 233 (379)
++.+||=.|+ +.|..+..+++..|.+++.++.+. ..+.+++ .+. ..+......+. ......+|+++..
T Consensus 144 ~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~-~~~~~~~----~g~---~~~~~~~~~~~~~~~~~~~~d~v~~~ 215 (309)
T cd05289 144 AGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA-NADFLRS----LGA---DEVIDYTKGDFERAAAPGGVDAVLDT 215 (309)
T ss_pred CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch-hHHHHHH----cCC---CEEEeCCCCchhhccCCCCceEEEEC
Confidence 3788988886 356666777776688999888766 5554432 232 11111111111 1123458888743
Q ss_pred cccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
... ..+..+.+.|+++|.++...
T Consensus 216 -----~~~--~~~~~~~~~l~~~g~~v~~g 238 (309)
T cd05289 216 -----VGG--ETLARSLALVKPGGRLVSIA 238 (309)
T ss_pred -----Cch--HHHHHHHHHHhcCcEEEEEc
Confidence 122 26788889999999988765
No 472
>PRK12937 short chain dehydrogenase; Provisional
Probab=71.57 E-value=70 Score=27.99 Aligned_cols=102 Identities=20% Similarity=0.192 Sum_probs=57.6
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCC-HHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----CC-----C
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLS-PVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----D 224 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s-~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~ 224 (379)
+.+||=.|++ |.++..+++.+ |.+++.+.-+ +...+...+.+...+ .++.++.+|+.+.. +. .
T Consensus 5 ~~~vlItG~~-~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (245)
T PRK12937 5 NKVAIVTGAS-RGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAG--GRAIAVQADVADAAAVTRLFDAAETAF 81 (245)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 6788888875 44455555443 6777766543 333333333333332 46888888986631 11 1
Q ss_pred CcccEEEeccccCCC---C--C---H-----------HHHHHHHHHhcCCCCEEEEEe
Q 016981 225 GQFDLVWSMESGEHM---P--D---K-----------SKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 225 ~~fD~V~~~~~l~~~---~--~---~-----------~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+..|+|+.+...... . + . ..+++.+.+.++++|.++...
T Consensus 82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 139 (245)
T PRK12937 82 GRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLS 139 (245)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEe
Confidence 468988876544321 0 0 1 134556666777888877765
No 473
>PRK08251 short chain dehydrogenase; Provisional
Probab=71.38 E-value=27 Score=30.83 Aligned_cols=77 Identities=18% Similarity=0.100 Sum_probs=50.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-C---------CCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-F---------PDG 225 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~---------~~~ 225 (379)
+.++|=.|+ +|.++..+++++ +.+|+.++-++..++.....+.......++.++.+|+.+.. . ..+
T Consensus 2 ~k~vlItGa-s~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK08251 2 RQKILITGA-SSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG 80 (248)
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 456887775 566666666555 78999999988777666555443321236888899987642 0 124
Q ss_pred cccEEEecccc
Q 016981 226 QFDLVWSMESG 236 (379)
Q Consensus 226 ~fD~V~~~~~l 236 (379)
..|.|+.+..+
T Consensus 81 ~id~vi~~ag~ 91 (248)
T PRK08251 81 GLDRVIVNAGI 91 (248)
T ss_pred CCCEEEECCCc
Confidence 68988876554
No 474
>PRK06172 short chain dehydrogenase; Provisional
Probab=71.30 E-value=27 Score=31.03 Aligned_cols=75 Identities=21% Similarity=0.233 Sum_probs=49.9
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----C-----CCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~ 225 (379)
+++||=.|++. .++..+++++ |.+|+.++-++..++...+.+...+ .++.++.+|+.+.. + ..+
T Consensus 7 ~k~ilItGas~-~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~g 83 (253)
T PRK06172 7 GKVALVTGGAA-GIGRATALAFAREGAKVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAAYG 83 (253)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 67888888754 4444444433 7899999999877766665555433 46888899987631 0 014
Q ss_pred cccEEEecccc
Q 016981 226 QFDLVWSMESG 236 (379)
Q Consensus 226 ~fD~V~~~~~l 236 (379)
.+|+|+.+...
T Consensus 84 ~id~li~~ag~ 94 (253)
T PRK06172 84 RLDYAFNNAGI 94 (253)
T ss_pred CCCEEEECCCC
Confidence 67999876554
No 475
>PRK06949 short chain dehydrogenase; Provisional
Probab=71.22 E-value=27 Score=31.01 Aligned_cols=75 Identities=17% Similarity=0.131 Sum_probs=49.8
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-C---------CCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-F---------PDG 225 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~---------~~~ 225 (379)
+++||=.| |+|.++..+++.+ |.+|++++.++..++.....+...+ .++.++.+|+.+.. . ..+
T Consensus 9 ~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 85 (258)
T PRK06949 9 GKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEG--GAAHVVSLDVTDYQSIKAAVAHAETEAG 85 (258)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 67888888 4555555555544 7899999999887766665554332 36778888886531 0 124
Q ss_pred cccEEEecccc
Q 016981 226 QFDLVWSMESG 236 (379)
Q Consensus 226 ~fD~V~~~~~l 236 (379)
..|+|+.+...
T Consensus 86 ~~d~li~~ag~ 96 (258)
T PRK06949 86 TIDILVNNSGV 96 (258)
T ss_pred CCCEEEECCCC
Confidence 67988876654
No 476
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=71.19 E-value=81 Score=28.79 Aligned_cols=81 Identities=21% Similarity=0.122 Sum_probs=58.1
Q ss_pred CCCEEEEeCCcccHH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC-CCCeEEEEccCCCCC----------CC
Q 016981 158 RPKNVVDVGCGIGGS---SRYLAKKFGAKCQGITLSPVQAQRANALAAARGL-ADKVSFQVGDALQQP----------FP 223 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~---~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~~i~~~~~d~~~~~----------~~ 223 (379)
.++.+|--|.++|.- +..+++. |++|+.++.+.+.++...+.....+. ..++....+|+.+.+ ..
T Consensus 7 ~gkvalVTG~s~GIG~aia~~la~~-Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~~ 85 (270)
T KOG0725|consen 7 AGKVALVTGGSSGIGKAIALLLAKA-GAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVEK 85 (270)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHHH
Confidence 377888888888763 4444544 89999999999998887777665544 256888899987532 11
Q ss_pred -CCcccEEEeccccCCC
Q 016981 224 -DGQFDLVWSMESGEHM 239 (379)
Q Consensus 224 -~~~fD~V~~~~~l~~~ 239 (379)
.+..|+++.+......
T Consensus 86 ~~GkidiLvnnag~~~~ 102 (270)
T KOG0725|consen 86 FFGKIDILVNNAGALGL 102 (270)
T ss_pred hCCCCCEEEEcCCcCCC
Confidence 4789999987665543
No 477
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=71.02 E-value=28 Score=30.58 Aligned_cols=75 Identities=19% Similarity=0.159 Sum_probs=49.3
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----CC-----CC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----DG 225 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~~ 225 (379)
+.++|-.|+ +|.++..+++++ |.+|+.++.++...+.....+...+ .++.++.+|+.+.. +. .+
T Consensus 7 ~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (239)
T PRK07666 7 GKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYG--VKVVIATADVSDYEEVTAAIEQLKNELG 83 (239)
T ss_pred CCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 567888885 666666666554 7899999998876655444444332 46888889986532 10 13
Q ss_pred cccEEEecccc
Q 016981 226 QFDLVWSMESG 236 (379)
Q Consensus 226 ~fD~V~~~~~l 236 (379)
..|+|+.+...
T Consensus 84 ~id~vi~~ag~ 94 (239)
T PRK07666 84 SIDILINNAGI 94 (239)
T ss_pred CccEEEEcCcc
Confidence 68998876544
No 478
>PRK07102 short chain dehydrogenase; Provisional
Probab=70.56 E-value=26 Score=30.89 Aligned_cols=73 Identities=23% Similarity=0.203 Sum_probs=46.1
Q ss_pred CEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-C------CCCcccE
Q 016981 160 KNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-F------PDGQFDL 229 (379)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~------~~~~fD~ 229 (379)
++||-.|+ +|.++..+++.+ |.+|++++.++.-.+...+.....+ ..++.++.+|+.+.. . -...+|+
T Consensus 2 ~~vlItGa-s~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~ 79 (243)
T PRK07102 2 KKILIIGA-TSDIARACARRYAAAGARLYLAARDVERLERLADDLRARG-AVAVSTHELDILDTASHAAFLDSLPALPDI 79 (243)
T ss_pred cEEEEEcC-CcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEecCCCChHHHHHHHHHHhhcCCE
Confidence 36787774 455566555544 7899999998876655444433322 247889999987642 0 0134788
Q ss_pred EEecc
Q 016981 230 VWSME 234 (379)
Q Consensus 230 V~~~~ 234 (379)
|+.+.
T Consensus 80 vv~~a 84 (243)
T PRK07102 80 VLIAV 84 (243)
T ss_pred EEECC
Confidence 88654
No 479
>PRK10083 putative oxidoreductase; Provisional
Probab=70.07 E-value=33 Score=32.01 Aligned_cols=97 Identities=11% Similarity=0.050 Sum_probs=54.9
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHH-cCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCC-CCCCCCcccEEEec
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKK-FGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-QPFPDGQFDLVWSM 233 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~-~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~fD~V~~~ 233 (379)
++.+||=.|+|. |..+..+++. .|. .++++|.++...+.+++. |...-+.....+... +.-....+|+|+-.
T Consensus 160 ~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~----Ga~~~i~~~~~~~~~~~~~~g~~~d~vid~ 235 (339)
T PRK10083 160 EQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKES----GADWVINNAQEPLGEALEEKGIKPTLIIDA 235 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHh----CCcEEecCccccHHHHHhcCCCCCCEEEEC
Confidence 478899898652 4455666664 366 588899988887776542 221001111111100 11011124566532
Q ss_pred cccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
. .. ...+.+..+.|+++|+++....
T Consensus 236 ~-----g~-~~~~~~~~~~l~~~G~~v~~g~ 260 (339)
T PRK10083 236 A-----CH-PSILEEAVTLASPAARIVLMGF 260 (339)
T ss_pred C-----CC-HHHHHHHHHHhhcCCEEEEEcc
Confidence 1 11 3468888999999999988764
No 480
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=70.06 E-value=19 Score=33.49 Aligned_cols=92 Identities=11% Similarity=0.053 Sum_probs=54.8
Q ss_pred CCEEEEe--CC-cccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-----C-CCCCcccE
Q 016981 159 PKNVVDV--GC-GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----P-FPDGQFDL 229 (379)
Q Consensus 159 ~~~vLDi--Gc-GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~-~~~~~fD~ 229 (379)
+.++|=+ |+ +.|..+..+++..|.++++++.++...+.+++ .|.. .++..+-.+. . .....+|+
T Consensus 143 ~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~----~g~~---~~i~~~~~~~~~~v~~~~~~~~~d~ 215 (324)
T cd08291 143 GAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLKK----IGAE---YVLNSSDPDFLEDLKELIAKLNATI 215 (324)
T ss_pred CCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCc---EEEECCCccHHHHHHHHhCCCCCcE
Confidence 3344443 43 35667777888778899999999988777765 2321 1221111111 0 12245898
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
|+-.-. . ..+....+.|++||+++....
T Consensus 216 vid~~g-----~--~~~~~~~~~l~~~G~~v~~g~ 243 (324)
T cd08291 216 FFDAVG-----G--GLTGQILLAMPYGSTLYVYGY 243 (324)
T ss_pred EEECCC-----c--HHHHHHHHhhCCCCEEEEEEe
Confidence 874321 1 234556788999999988764
No 481
>PRK12744 short chain dehydrogenase; Provisional
Probab=69.80 E-value=72 Score=28.34 Aligned_cols=101 Identities=22% Similarity=0.226 Sum_probs=56.5
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCC----HHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----C----
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLS----PVQAQRANALAAARGLADKVSFQVGDALQQP-----F---- 222 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s----~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~---- 222 (379)
++++|=.|++. .++..+++.+ |.+|+.++.+ ....+...+.++..+ .++.++.+|+.+.. +
T Consensus 8 ~k~vlItGa~~-gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~ 84 (257)
T PRK12744 8 GKVVLIAGGAK-NLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAG--AKAVAFQADLTTAAAVEKLFDDAK 84 (257)
T ss_pred CcEEEEECCCc-hHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhC--CcEEEEecCcCCHHHHHHHHHHHH
Confidence 57888888654 4555555544 6776666542 233333333333222 36888899987631 0
Q ss_pred -CCCcccEEEeccccCCC------C--CH-----------HHHHHHHHHhcCCCCEEEEE
Q 016981 223 -PDGQFDLVWSMESGEHM------P--DK-----------SKFVSELARVTAPAGTIIIV 262 (379)
Q Consensus 223 -~~~~fD~V~~~~~l~~~------~--~~-----------~~~l~~~~r~LkpgG~l~i~ 262 (379)
..+..|+++.+...... . +. ..+++.+.+.++++|.+++.
T Consensus 85 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~ 144 (257)
T PRK12744 85 AAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTL 144 (257)
T ss_pred HhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEE
Confidence 12468999876654221 1 11 12456666777777776654
No 482
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=69.64 E-value=66 Score=30.86 Aligned_cols=42 Identities=29% Similarity=0.316 Sum_probs=33.8
Q ss_pred CCCEEEEeCC--cccHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Q 016981 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANA 199 (379)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~ 199 (379)
++.+||=.|+ +.|..+..+++..|.++++++.++...+.+++
T Consensus 193 ~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~~~ 236 (393)
T cd08246 193 PGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYCRA 236 (393)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH
Confidence 4789999986 45667777888778899999999988887765
No 483
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=69.57 E-value=23 Score=32.47 Aligned_cols=46 Identities=20% Similarity=0.159 Sum_probs=40.3
Q ss_pred CCCEEEEeCCcccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR 204 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~ 204 (379)
++..|||.=+|+|..+...... +-.++|+|+++.-++.+.+++...
T Consensus 222 ~~diVlDpf~GsGtt~~aa~~~-~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 222 PGDIVLDPFAGSGTTGIAAKNL-GRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred CCCEEeecCCCCChHHHHHHHc-CCceEEEecCHHHHHHHHHHHHhh
Confidence 4899999999999988776654 789999999999999999998764
No 484
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=69.54 E-value=30 Score=32.16 Aligned_cols=93 Identities=24% Similarity=0.288 Sum_probs=59.3
Q ss_pred CCCEEEEeCCc--ccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccc
Q 016981 158 RPKNVVDVGCG--IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (379)
Q Consensus 158 ~~~~vLDiGcG--tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (379)
++.+||=.|++ .|..+..+++..|.+++.++.++...+.+++. ...-+..+ .+ ..++.. . +.+|+++....
T Consensus 162 ~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~~~~~~~~~-~~~~~~~~-~~-~~~v~~--~--~~~d~~ld~~g 234 (334)
T PRK13771 162 KGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAKIVSKY-ADYVIVGS-KF-SEEVKK--I--GGADIVIETVG 234 (334)
T ss_pred CCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHHhcCch-hH-HHHHHh--c--CCCcEEEEcCC
Confidence 37888888883 57777888887788999999999888877553 21111111 00 001111 1 24788875311
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 236 GEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
...+..+.+.|+++|.++....
T Consensus 235 -------~~~~~~~~~~l~~~G~~v~~g~ 256 (334)
T PRK13771 235 -------TPTLEESLRSLNMGGKIIQIGN 256 (334)
T ss_pred -------hHHHHHHHHHHhcCCEEEEEec
Confidence 1257788899999999888764
No 485
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=69.44 E-value=14 Score=36.35 Aligned_cols=68 Identities=25% Similarity=0.223 Sum_probs=46.7
Q ss_pred CCCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC----CCCCcccEE
Q 016981 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLV 230 (379)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~V 230 (379)
...+|+=+|+ |.++..+++.+ +..|+.+|.+++.++..++.. .++.++.+|..+.. ..-..+|.|
T Consensus 230 ~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~------~~~~~i~gd~~~~~~L~~~~~~~a~~v 301 (453)
T PRK09496 230 PVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL------PNTLVLHGDGTDQELLEEEGIDEADAF 301 (453)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC------CCCeEEECCCCCHHHHHhcCCccCCEE
Confidence 3678888888 55555555544 679999999999887766542 25677888886531 223567887
Q ss_pred Eec
Q 016981 231 WSM 233 (379)
Q Consensus 231 ~~~ 233 (379)
++.
T Consensus 302 i~~ 304 (453)
T PRK09496 302 IAL 304 (453)
T ss_pred EEC
Confidence 753
No 486
>PRK05872 short chain dehydrogenase; Provisional
Probab=69.32 E-value=31 Score=31.67 Aligned_cols=75 Identities=25% Similarity=0.213 Sum_probs=46.9
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----C-----CCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~ 225 (379)
+++||-.|++.| ++..+++.+ |.+|+.++.++..++...+.+.. ...+..+.+|+.+.. + ..+
T Consensus 9 gk~vlItGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 84 (296)
T PRK05872 9 GKVVVVTGAARG-IGAELARRLHARGAKLALVDLEEAELAALAAELGG---DDRVLTVVADVTDLAAMQAAAEEAVERFG 84 (296)
T ss_pred CCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC---CCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 678888886654 344444433 78999999988776655444321 134555568876631 0 115
Q ss_pred cccEEEeccccC
Q 016981 226 QFDLVWSMESGE 237 (379)
Q Consensus 226 ~fD~V~~~~~l~ 237 (379)
..|+|+.+-.+.
T Consensus 85 ~id~vI~nAG~~ 96 (296)
T PRK05872 85 GIDVVVANAGIA 96 (296)
T ss_pred CCCEEEECCCcC
Confidence 689999876653
No 487
>PRK05867 short chain dehydrogenase; Provisional
Probab=68.93 E-value=28 Score=30.94 Aligned_cols=76 Identities=17% Similarity=0.113 Sum_probs=50.5
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----C-----CCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~ 225 (379)
++++|=.|++.|. +..+++.+ |.+|+.++.++..++...+.+...+ .++.++.+|+.+.. + .-+
T Consensus 9 ~k~vlVtGas~gI-G~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g 85 (253)
T PRK05867 9 GKRALITGASTGI-GKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAELG 85 (253)
T ss_pred CCEEEEECCCchH-HHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 6789988976554 44444333 7899999998887776666555433 36778888887631 0 114
Q ss_pred cccEEEeccccC
Q 016981 226 QFDLVWSMESGE 237 (379)
Q Consensus 226 ~fD~V~~~~~l~ 237 (379)
..|+++.+....
T Consensus 86 ~id~lv~~ag~~ 97 (253)
T PRK05867 86 GIDIAVCNAGII 97 (253)
T ss_pred CCCEEEECCCCC
Confidence 789998765543
No 488
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=68.90 E-value=32 Score=31.67 Aligned_cols=94 Identities=22% Similarity=0.271 Sum_probs=54.2
Q ss_pred CEEEEeCCcc-c-HHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc----------CC---------CCCeEEEEccCC
Q 016981 160 KNVVDVGCGI-G-GSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR----------GL---------ADKVSFQVGDAL 218 (379)
Q Consensus 160 ~~vLDiGcGt-G-~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~----------~~---------~~~i~~~~~d~~ 218 (379)
.+|.=||+|. | .++..++.. |.+|+.+|.++..++.+++++... +. ..++.+. .|..
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~-G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~ 81 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART-GYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSYE 81 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCHH
Confidence 4688888885 2 234444443 789999999999998776644321 11 0112221 1211
Q ss_pred CCCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEE
Q 016981 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTII 260 (379)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~ 260 (379)
. -...|+|+.. +.........+++++.+.++|+..++
T Consensus 82 ~----~~~aDlViea-v~e~~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 82 S----LSDADFIVEA-VPEKLDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred H----hCCCCEEEEc-CcCcHHHHHHHHHHHHhhCCCCeEEE
Confidence 1 1346888754 22222224678888888888876543
No 489
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=68.70 E-value=14 Score=31.06 Aligned_cols=95 Identities=22% Similarity=0.250 Sum_probs=54.7
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC--------------C-
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--------------P- 221 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--------------~- 221 (379)
++.+|+=+|.|. |.-+..++..+|++++..|..+..++..+... ..+...+..+. |
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~--------~~~i~~~~~~~~~~~~~~~~~~~~~~~ 90 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLG--------AYFIEVDYEDHLERKDFDKADYYEHPE 90 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT--------TEESEETTTTTTTSB-CCHHHCHHHCC
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhccc--------CceEEEcccccccccccchhhhhHHHH
Confidence 478999999985 66778888888999999999987776655422 22222221110 1
Q ss_pred -----CC--CCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEE
Q 016981 222 -----FP--DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTII 260 (379)
Q Consensus 222 -----~~--~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~ 260 (379)
|. -..+|+|+......--..|.-+-++..+.||||-.++
T Consensus 91 ~~~~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIv 136 (168)
T PF01262_consen 91 SYESNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIV 136 (168)
T ss_dssp HHHHHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEE
T ss_pred HhHHHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEE
Confidence 10 1347888865554433444445566677788776543
No 490
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=68.70 E-value=27 Score=28.68 Aligned_cols=114 Identities=17% Similarity=0.143 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEeCCcccHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEE
Q 016981 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQ 213 (379)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~ 213 (379)
-.++...++......... ..-|||+|=|+|+.=.+|.+.+ +.+++.+|-.-..-. ...|+.-.++
T Consensus 11 mtaQR~~L~~a~~~v~~~------~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp--------~~~P~~~~~i 76 (160)
T PF12692_consen 11 MTAQRDCLNWAAAQVAGL------PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHP--------SSTPPEEDLI 76 (160)
T ss_dssp HHHHHHHHHHHHHHTTT--------S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-G--------GG---GGGEE
T ss_pred HHHHHHHHHHHHHHhcCC------CCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCC--------CCCCchHhee
Confidence 345556666666654422 5679999999999999999988 789999996432211 1134455677
Q ss_pred EccCCCC-C---CCCCcccEEEeccccCCCCCHH-----HHHHHHHHhcCCCCEEEEEe
Q 016981 214 VGDALQQ-P---FPDGQFDLVWSMESGEHMPDKS-----KFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 214 ~~d~~~~-~---~~~~~fD~V~~~~~l~~~~~~~-----~~l~~~~r~LkpgG~l~i~~ 263 (379)
.+|+.+. + +.....-++++-...++ ++.. .+-.-+..+|.|||.++-..
T Consensus 77 lGdi~~tl~~~~~~g~~a~laHaD~G~g~-~~~d~a~a~~lspli~~~la~gGi~vS~~ 134 (160)
T PF12692_consen 77 LGDIRETLPALARFGAGAALAHADIGTGD-KEKDDATAAWLSPLIAPVLAPGGIMVSGQ 134 (160)
T ss_dssp ES-HHHHHHHHHHH-S-EEEEEE----S--HHHHHHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred eccHHHHhHHHHhcCCceEEEEeecCCCC-cchhHHHHHhhhHHHHHHhcCCcEEEeCC
Confidence 7887653 2 11233444444333332 2221 22234678999999876644
No 491
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=68.52 E-value=59 Score=30.01 Aligned_cols=93 Identities=15% Similarity=0.136 Sum_probs=58.8
Q ss_pred CCCEEEEeCC--cccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-----CCCCCcccEE
Q 016981 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----PFPDGQFDLV 230 (379)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~fD~V 230 (379)
++.+||=.|+ +.|..+..+++..|.++++++.++...+.+++.+ +. ..++..+-.+. ....+.+|+|
T Consensus 145 ~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~~---g~---~~~~~~~~~~~~~~v~~~~~~~~d~v 218 (329)
T cd05288 145 PGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLVEEL---GF---DAAINYKTPDLAEALKEAAPDGIDVY 218 (329)
T ss_pred CCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhhc---CC---ceEEecCChhHHHHHHHhccCCceEE
Confidence 3788888884 4577777888877889999999887777665432 21 11111110000 0112458888
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCCEEEEEe
Q 016981 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~ 263 (379)
+... . ...+....+.|+++|+++...
T Consensus 219 i~~~-----g--~~~~~~~~~~l~~~G~~v~~g 244 (329)
T cd05288 219 FDNV-----G--GEILDAALTLLNKGGRIALCG 244 (329)
T ss_pred EEcc-----h--HHHHHHHHHhcCCCceEEEEe
Confidence 7431 1 246888899999999988665
No 492
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=68.47 E-value=53 Score=29.95 Aligned_cols=97 Identities=16% Similarity=0.281 Sum_probs=53.0
Q ss_pred CCCEEEEeCC--cccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCCCCCCcccEEEeccc
Q 016981 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (379)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (379)
++.+||-.|+ +.|..+..+++..|.++++++.+ ...+.+++ .+...-+.....+........+.+|+|+....
T Consensus 143 ~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~-~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~ 217 (319)
T cd08267 143 PGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST-RNAELVRS----LGADEVIDYTTEDFVALTAGGEKYDVIFDAVG 217 (319)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH-HHHHHHHH----cCCCEeecCCCCCcchhccCCCCCcEEEECCC
Confidence 3889999997 35677777888778899998854 44444432 23210011000011001122356899875422
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 236 GEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
- ....... ....|+++|+++....
T Consensus 218 ~----~~~~~~~-~~~~l~~~g~~i~~g~ 241 (319)
T cd08267 218 N----SPFSLYR-ASLALKPGGRYVSVGG 241 (319)
T ss_pred c----hHHHHHH-hhhccCCCCEEEEecc
Confidence 1 1122222 2334999999988754
No 493
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=68.42 E-value=53 Score=29.37 Aligned_cols=100 Identities=12% Similarity=0.002 Sum_probs=59.5
Q ss_pred CCEEEEeCCc-ccHHHHHHHHHc---CCEEEEEeCCH--HHHHHHHHHHHHcCCCCCeEEEEccCCCCC----------C
Q 016981 159 PKNVVDVGCG-IGGSSRYLAKKF---GAKCQGITLSP--VQAQRANALAAARGLADKVSFQVGDALQQP----------F 222 (379)
Q Consensus 159 ~~~vLDiGcG-tG~~~~~l~~~~---~~~v~gvD~s~--~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~ 222 (379)
++++|=.|+| ++.++..+++.+ |.+|+.++.+. ..++...+.+ ..++.++.+|+.+.. -
T Consensus 7 ~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~i~~~~~~~~~ 81 (256)
T PRK07889 7 GKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRL-----PEPAPVLELDVTNEEHLASLADRVRE 81 (256)
T ss_pred CCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhc-----CCCCcEEeCCCCCHHHHHHHHHHHHH
Confidence 6789999984 455555555544 78999888653 3333332221 135667888887632 0
Q ss_pred CCCcccEEEeccccCC-------CC--CHH--------------HHHHHHHHhcCCCCEEEEEe
Q 016981 223 PDGQFDLVWSMESGEH-------MP--DKS--------------KFVSELARVTAPAGTIIIVT 263 (379)
Q Consensus 223 ~~~~fD~V~~~~~l~~-------~~--~~~--------------~~l~~~~r~LkpgG~l~i~~ 263 (379)
..+.+|+++.+-.+.. +. +.+ .+.+.+...++++|.++...
T Consensus 82 ~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is 145 (256)
T PRK07889 82 HVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLD 145 (256)
T ss_pred HcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEe
Confidence 1257999987654431 11 111 23455667788888877654
No 494
>PRK07890 short chain dehydrogenase; Provisional
Probab=68.24 E-value=34 Score=30.33 Aligned_cols=75 Identities=21% Similarity=0.129 Sum_probs=49.3
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-C---------CCC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-F---------PDG 225 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~---------~~~ 225 (379)
+++||=.|++.| ++..+++.+ |.+|++++.++.-++...+.+...+ .++.++..|+.+.. . .-+
T Consensus 5 ~k~vlItGa~~~-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (258)
T PRK07890 5 GKVVVVSGVGPG-LGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALERFG 81 (258)
T ss_pred CCEEEEECCCCc-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence 678887776544 444444433 7899999998877666655554433 46788899986531 0 014
Q ss_pred cccEEEecccc
Q 016981 226 QFDLVWSMESG 236 (379)
Q Consensus 226 ~fD~V~~~~~l 236 (379)
..|+|+.+...
T Consensus 82 ~~d~vi~~ag~ 92 (258)
T PRK07890 82 RVDALVNNAFR 92 (258)
T ss_pred CccEEEECCcc
Confidence 68998876644
No 495
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=68.21 E-value=67 Score=29.09 Aligned_cols=93 Identities=19% Similarity=0.106 Sum_probs=59.3
Q ss_pred CCCEEEEeCC--cccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCC-----C-CCCCcccE
Q 016981 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----P-FPDGQFDL 229 (379)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~-~~~~~fD~ 229 (379)
++.+||=.|+ +.|..+..+++..|..+++++.++...+.+++ .|. -.++..+-... . .....+|+
T Consensus 136 ~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~---~~~~~~~~~~~~~~~~~~~~~~~~d~ 208 (320)
T cd05286 136 PGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELARA----AGA---DHVINYRDEDFVERVREITGGRGVDV 208 (320)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----CCC---CEEEeCCchhHHHHHHHHcCCCCeeE
Confidence 3788998884 46677777888778999999998887776643 232 11111111110 0 12345898
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
|+... .. ..+..+.+.|+++|+++....
T Consensus 209 vl~~~-----~~--~~~~~~~~~l~~~g~~v~~g~ 236 (320)
T cd05286 209 VYDGV-----GK--DTFEGSLDSLRPRGTLVSFGN 236 (320)
T ss_pred EEECC-----Cc--HhHHHHHHhhccCcEEEEEec
Confidence 87532 22 356778899999999887653
No 496
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=68.05 E-value=34 Score=35.99 Aligned_cols=99 Identities=21% Similarity=0.147 Sum_probs=63.8
Q ss_pred CCCEEEEeCCccc--HHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc-------C-CC--------CCeEEEEccCCC
Q 016981 158 RPKNVVDVGCGIG--GSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR-------G-LA--------DKVSFQVGDALQ 219 (379)
Q Consensus 158 ~~~~vLDiGcGtG--~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~-------~-~~--------~~i~~~~~d~~~ 219 (379)
+-.+|.=||+|+= .++..++...|..|+.+|.+++.++.+++++... + +. .++.+. .|...
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~ 386 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDYRG 386 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CChHH
Confidence 3468999999972 3445555344889999999999998887655331 1 10 133332 22211
Q ss_pred CCCCCCcccEEEeccccCCCCCHHHHHHHHHHhcCCCCEEEEE
Q 016981 220 QPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (379)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~ 262 (379)
+ ...|+|+=. +.+.+.-..++++++.++++|+..|.-.
T Consensus 387 --~--~~aDlViEa-v~E~~~~K~~v~~~le~~~~~~~ilasn 424 (708)
T PRK11154 387 --F--KHADVVIEA-VFEDLALKQQMVAEVEQNCAPHTIFASN 424 (708)
T ss_pred --h--ccCCEEeec-ccccHHHHHHHHHHHHhhCCCCcEEEEC
Confidence 1 346777633 4455555689999999999999877643
No 497
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=68.03 E-value=49 Score=32.45 Aligned_cols=90 Identities=18% Similarity=0.179 Sum_probs=55.3
Q ss_pred EEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC----CCCCcccEEEec
Q 016981 161 NVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVWSM 233 (379)
Q Consensus 161 ~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~V~~~ 233 (379)
+|+=+|+ |.++..+++.+ +..|+++|.++..++.+++. ..+.+..+|..+.. ..-..+|.|++.
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~-------~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~ 72 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR-------LDVRTVVGNGSSPDVLREAGAEDADLLIAV 72 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh-------cCEEEEEeCCCCHHHHHHcCCCcCCEEEEe
Confidence 5666776 67777776644 67999999999887766542 14677888876531 123468887764
Q ss_pred cccCCCCCHHHHHHHHHHhcCCCCEEEEE
Q 016981 234 ESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (379)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r~LkpgG~l~i~ 262 (379)
..- .+....+....+.+.|.-.+++.
T Consensus 73 ~~~---~~~n~~~~~~~r~~~~~~~ii~~ 98 (453)
T PRK09496 73 TDS---DETNMVACQIAKSLFGAPTTIAR 98 (453)
T ss_pred cCC---hHHHHHHHHHHHHhcCCCeEEEE
Confidence 211 12234455556666555555443
No 498
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=68.03 E-value=17 Score=33.90 Aligned_cols=94 Identities=18% Similarity=0.165 Sum_probs=56.7
Q ss_pred CCCEEEEeCCcc-cHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCC---CC-C-CCCCcccEE
Q 016981 158 RPKNVVDVGCGI-GGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL---QQ-P-FPDGQFDLV 230 (379)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~---~~-~-~~~~~fD~V 230 (379)
++.+||=.|+|. |..+..+++..+ .+|++++-++...+.+++ .|. . .++..+-. .+ . .+...+|+|
T Consensus 167 ~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~----~g~-~--~~~~~~~~~~~~i~~~~~~~~~dvv 239 (340)
T cd05284 167 PGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAER----LGA-D--HVLNASDDVVEEVRELTGGRGADAV 239 (340)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHH----hCC-c--EEEcCCccHHHHHHHHhCCCCCCEE
Confidence 377888888553 444555666666 799999988877666543 232 1 11111100 01 0 122458988
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
+.... . ...+.++.+.|+++|+++....
T Consensus 240 ld~~g-----~-~~~~~~~~~~l~~~g~~i~~g~ 267 (340)
T cd05284 240 IDFVG-----S-DETLALAAKLLAKGGRYVIVGY 267 (340)
T ss_pred EEcCC-----C-HHHHHHHHHHhhcCCEEEEEcC
Confidence 75321 1 3568888999999999987654
No 499
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=67.97 E-value=36 Score=30.00 Aligned_cols=74 Identities=26% Similarity=0.249 Sum_probs=48.1
Q ss_pred CCEEEEeCCcccHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEccCCCCC-----CC-----CC
Q 016981 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----DG 225 (379)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~~ 225 (379)
+.++|=.|++. .++..+++.+ |.+|+.+|.++..++.+.+.+...+ .++.++..|+.+.. +. .+
T Consensus 5 ~~~~lItG~~g-~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (253)
T PRK08217 5 DKVIVITGGAQ-GLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALG--TEVRGYAANVTDEEDVEATFAQIAEDFG 81 (253)
T ss_pred CCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 67899888644 4444444433 7899999999877666655554433 46788888876531 00 14
Q ss_pred cccEEEeccc
Q 016981 226 QFDLVWSMES 235 (379)
Q Consensus 226 ~fD~V~~~~~ 235 (379)
.+|+|+.+..
T Consensus 82 ~id~vi~~ag 91 (253)
T PRK08217 82 QLNGLINNAG 91 (253)
T ss_pred CCCEEEECCC
Confidence 6899887654
No 500
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=67.60 E-value=76 Score=29.21 Aligned_cols=94 Identities=20% Similarity=0.212 Sum_probs=59.9
Q ss_pred CCCEEEEeCC--cccHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc--c-CCC-C--CCCCCcccE
Q 016981 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVG--D-ALQ-Q--PFPDGQFDL 229 (379)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~--d-~~~-~--~~~~~~fD~ 229 (379)
++.+||=.|+ +.|..+..+++..|..++.++-++...+.+++ .|. ...+... + ... + ......+|+
T Consensus 140 ~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~--~~~~~~~~~~~~~~~~~~~~~~~~~d~ 213 (334)
T PTZ00354 140 KGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFCKK----LAA--IILIRYPDEEGFAPKVKKLTGEKGVNL 213 (334)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCC--cEEEecCChhHHHHHHHHHhCCCCceE
Confidence 3778888874 46777888888778888888888887777643 232 1111111 1 100 0 012346888
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCCEEEEEec
Q 016981 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (379)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 264 (379)
++.... ...+..+.+.|+++|.++...+
T Consensus 214 ~i~~~~-------~~~~~~~~~~l~~~g~~i~~~~ 241 (334)
T PTZ00354 214 VLDCVG-------GSYLSETAEVLAVDGKWIVYGF 241 (334)
T ss_pred EEECCc-------hHHHHHHHHHhccCCeEEEEec
Confidence 885421 3567888999999999887653
Done!