BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016982
(379 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 285 bits (730), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 158/380 (41%), Positives = 222/380 (58%), Gaps = 22/380 (5%)
Query: 4 IAVHQF-AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDW 62
+A H F + I+CHAW+ D +A CPNN+EVHIY+ KW ++H L++H+ V+GIDW
Sbjct: 1 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDW 60
Query: 63 SVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTV 122
+ SNRIVT DRN+YVW +G W PTLVILR+NRAA CV+W+P E KFAVGSG++ +
Sbjct: 61 APDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVI 120
Query: 123 CICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKE 182
ICY+EQEN+WWV K I+K S+V S+ WHPN+V LA S D KCR+FS +IK V+ +
Sbjct: 121 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERP 180
Query: 183 KKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQN 242
S FGE + + S W GV +S +G+ +A+V H+S + D +A
Sbjct: 181 APTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVA-T 239
Query: 243 VAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADE-TGIWTFIKFLDERKTSSSGPKYGS 301
+A LPL V F++E ++ G DC P++F D G +F LD K SS + G
Sbjct: 240 LASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSS---QRGL 296
Query: 302 QFSEAFGKL------YGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFT 355
E F L G + G G D++ H N ++ I L G ++ ++F
Sbjct: 297 TARERFQNLDKKASSEGSAAAGAGLDSL---------HKNSVSQISVL-SGGKAKCSQFC 346
Query: 356 TSGLDGKIVTWDLESQEDLL 375
T+G+DG + WD+ S E L
Sbjct: 347 TTGMDGGMSIWDVRSLESAL 366
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 285 bits (728), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 157/380 (41%), Positives = 222/380 (58%), Gaps = 22/380 (5%)
Query: 4 IAVHQF-AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDW 62
+A H F + I+CHAW+ D +A CPNN+EVHIY+ KW ++H L++H+ V+G+DW
Sbjct: 1 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDW 60
Query: 63 SVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTV 122
+ SNRIVT DRN+YVW +G W PTLVILR+NRAA CV+W+P E KFAVGSG++ +
Sbjct: 61 APDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVI 120
Query: 123 CICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKE 182
ICY+EQEN+WWV K I+K S+V S+ WHPN+V LA S D KCR+FS +IK V+ +
Sbjct: 121 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERP 180
Query: 183 KKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQN 242
S FGE + + S W GV +S +G+ +A+V H+S + D +A
Sbjct: 181 APTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVA-T 239
Query: 243 VAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADE-TGIWTFIKFLDERKTSSSGPKYGS 301
+A LPL V F++E ++ G DC P++F D G +F LD K SS + G
Sbjct: 240 LASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSS---QRGL 296
Query: 302 QFSEAFGKL------YGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFT 355
E F L G + G G D++ H N ++ I L G ++ ++F
Sbjct: 297 TARERFQNLDKKASSEGSAAAGAGLDSL---------HKNSVSQISVL-SGGKAKCSQFC 346
Query: 356 TSGLDGKIVTWDLESQEDLL 375
T+G+DG + WD+ S E L
Sbjct: 347 TTGMDGGMSIWDVRSLESAL 366
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 222 bits (566), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 131/365 (35%), Positives = 193/365 (52%), Gaps = 16/365 (4%)
Query: 16 HAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD 75
HA++ N+V +Y+ W+ HD+IV+ +DW+ +SNRIVT S D
Sbjct: 17 HAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQD 76
Query: 76 RNSYVWNQE-GSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWW 134
RN+YV+ + W TLV+LRLNRAA V+WSP E+KFAVGSGA+ + +CY+EQEN+WW
Sbjct: 77 RNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWW 136
Query: 135 VSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFG 194
VSK +++ S++ S+ WHPNNV LA D K V S +++ VD K + S F
Sbjct: 137 VSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFN 196
Query: 195 EQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPS--PLAQ-NVAFRDLPLR 251
+ S W V +SPSGN LAY GH+S + P P A V LPLR
Sbjct: 197 TVCAEYP-SGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLR 255
Query: 252 DVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDE-------RKTSSSGPKYGSQFS 304
+L+ +E ++ G++ +P++ +E+G W + LD T ++G +
Sbjct: 256 SLLWANESAIVAAGYNYSPILLQGNESG-WAHTRDLDAGTSKTSFTHTGNTGEGREEEGP 314
Query: 305 EAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGS-SRITRFTTSGLDGKI 363
+F L + + +S + H N I + P AG+ IT FT+SG DG++
Sbjct: 315 VSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPY--AGTPGNITAFTSSGTDGRV 372
Query: 364 VTWDL 368
V W L
Sbjct: 373 VLWTL 377
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 3/162 (1%)
Query: 17 AWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDR 76
AWSP +A + I+K Q+ +E + L+ H+ V + W+ N + T S D+
Sbjct: 68 AWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDK 127
Query: 77 NSYVWN-QEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWV 135
+ +VW E E+ V+ + V W P + A S TV + Y E+E++ WV
Sbjct: 128 SVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKL-YREEEDD-WV 185
Query: 136 SKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKG 177
+ H+S+V S+A+ P+ LA+ S D R++ ++ G
Sbjct: 186 CCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPG 227
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 88/215 (40%), Gaps = 22/215 (10%)
Query: 17 AWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQK-HDQIVSGIDWSVRSNRIVTVSHD 75
AW+P ++A C + + I+ + W VL + H + V + WS N + + S D
Sbjct: 23 AWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD 82
Query: 76 RNSYVW--NQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNW 133
+ +W NQ+ E V TL V W+P N A S K+V + ++E+ +
Sbjct: 83 ATTCIWKKNQDDFECVTTLE--GHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEY 140
Query: 134 WVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKF 193
++ H V V WHP+ LA+ S D +++ +E+ + T
Sbjct: 141 ECVSVLNS-HTQDVKHVVWHPSQELLASASYDDTVKLYR--------EEEDDWVCCATLE 191
Query: 194 GEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMI 228
G + L+F PSG LA + +
Sbjct: 192 GHESTVWSLAF--------DPSGQRLASCSDDRTV 218
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 69/170 (40%), Gaps = 18/170 (10%)
Query: 60 IDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILR-LNRAALCVQWSPKENKFAVGSG 118
+ W+ + + DR +W EG W+ V+ R V WSP N A S
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 119 AKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGV 178
T CI Q++ V+ L + H++ V SVAW P+ LAT S D S ++ V
Sbjct: 82 DATTCIWKKNQDDFECVTTL--EGHENEVKSVAWAPSGNLLATCSRDK-----SVWVWEV 134
Query: 179 DIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMI 228
D +++ E S + + V W PS LA ++ +
Sbjct: 135 DEEDEYECVSVLNSHTQDVKH----------VVWHPSQELLASASYDDTV 174
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 66/168 (39%), Gaps = 13/168 (7%)
Query: 17 AWSPDHAMVAFCPNNNEVHIYKLIQE-KWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD 75
AW+P ++A C + V ++++ +E ++E + VL H Q V + W + + S+D
Sbjct: 112 AWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYD 171
Query: 76 RNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENN--- 132
++ +E +WV + + + P + A S +TV I N
Sbjct: 172 DTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQG 231
Query: 133 ---------WWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVF 171
W + H ++ +AW LAT D RVF
Sbjct: 232 VACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVF 279
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 50/126 (39%), Gaps = 17/126 (13%)
Query: 104 VQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS 163
+ W+P A G + + I + + ++W ++ + H +V VAW P +LA+ S
Sbjct: 22 LAWNPAGTLLASCGGDRRIRI-WGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASAS 80
Query: 164 TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVG 223
D ++ + EG ++ K V W+PSGN LA
Sbjct: 81 FDATTCIWKKNQDDFECVTTLEGHENEVK----------------SVAWAPSGNLLATCS 124
Query: 224 HNSMIY 229
+ ++
Sbjct: 125 RDKSVW 130
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 102/252 (40%), Gaps = 40/252 (15%)
Query: 8 QFAQCITCH-------AWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGI 60
Q Q +T H A+SPD +A ++ V KL + L L H V G+
Sbjct: 335 QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV---KLWNRNGQLLQTLTGHSSSVRGV 391
Query: 61 DWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120
+S I + S D+ +WN+ G + + TL + + V +SP + A S K
Sbjct: 392 AFSPDGQTIASASDDKTVKLWNRNG-QLLQTLT--GHSSSVWGVAFSPDDQTIASASDDK 448
Query: 121 TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVF--------- 171
TV + N + L H SSV VA+ P+ +A+ S D +++
Sbjct: 449 TVKLW---NRNGQLLQTLTG--HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT 503
Query: 172 ----STFIKGVDIKEKKE--GTSSDTKF-------GEQILQLDLSFSWAFGVKWSPSGNT 218
S+ ++GV + ++SD K G+ + L S +GV +SP G T
Sbjct: 504 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQT 563
Query: 219 LAYVGHNSMIYF 230
+A + +
Sbjct: 564 IASASSDKTVKL 575
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 67/289 (23%), Positives = 113/289 (39%), Gaps = 42/289 (14%)
Query: 8 QFAQCITCH-------AWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGI 60
Q Q +T H A+SPD +A ++ V KL + L L H V+G+
Sbjct: 212 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV---KLWNRNGQLLQTLTGHSSSVNGV 268
Query: 61 DWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120
+ I + S D+ +WN+ G + + TL + + V +SP A S K
Sbjct: 269 AFRPDGQTIASASDDKTVKLWNRNG-QLLQTLT--GHSSSVWGVAFSPDGQTIASASDDK 325
Query: 121 TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVF--------- 171
TV + ++ + L H SSV VA+ P+ +A+ S D +++
Sbjct: 326 TVKLWNRNGQH---LQTLT--GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT 380
Query: 172 ----STFIKGVDIKEKKE--GTSSDTKF-------GEQILQLDLSFSWAFGVKWSPSGNT 218
S+ ++GV + ++SD K G+ + L S +GV +SP T
Sbjct: 381 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQT 440
Query: 219 LAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFD 267
+A + + + G L Q + +R V F + I D
Sbjct: 441 IASASDDKTVKLWNRNG--QLLQTLTGHSSSVRGVAFSPDGQTIASASD 487
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 98/251 (39%), Gaps = 32/251 (12%)
Query: 17 AWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDR 76
A+SPD +A ++ V KL + L L H V G+ +S I + S D+
Sbjct: 23 AFSPDGQTIASASDDKTV---KLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDK 79
Query: 77 NSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVS 136
+WN+ G + + TL + + V +SP A S KTV + N +
Sbjct: 80 TVKLWNRNG-QLLQTLT--GHSSSVRGVAFSPDGQTIASASDDKTVKLW---NRNGQLLQ 133
Query: 137 KLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQ 196
L H SSV VA+ P+ +A+ S D ++++ + G+
Sbjct: 134 TLTG--HSSSVWGVAFSPDGQTIASASDDKTVKLWN-------------------RNGQL 172
Query: 197 ILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFV 256
+ L S +GV +SP G T+A + + + G L Q + +R V F
Sbjct: 173 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVRGVAFS 230
Query: 257 SEKMVIGVGFD 267
+ I D
Sbjct: 231 PDGQTIASASD 241
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 73/171 (42%), Gaps = 18/171 (10%)
Query: 8 QFAQCITCH-------AWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGI 60
Q Q +T H A+SPD +A ++ V KL + L L H V G+
Sbjct: 417 QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTV---KLWNRNGQLLQTLTGHSSSVRGV 473
Query: 61 DWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120
+S I + S D+ +WN+ G + + TL + + V +SP A S K
Sbjct: 474 AFSPDGQTIASASDDKTVKLWNRNG-QLLQTLT--GHSSSVRGVAFSPDGQTIASASDDK 530
Query: 121 TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVF 171
TV + N + L H SSV VA+ P+ +A+ S+D +++
Sbjct: 531 TVKLW---NRNGQLLQTLTG--HSSSVWGVAFSPDGQTIASASSDKTVKLW 576
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 73/181 (40%), Gaps = 27/181 (14%)
Query: 50 LQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPK 109
L+ H V G+ +S I + S D+ +WN+ G + + TL + + V +SP
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLT--GHSSSVWGVAFSPD 68
Query: 110 ENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCR 169
A S KTV + N + L H SSV VA+ P+ +A+ S D +
Sbjct: 69 GQTIASASDDKTVKLW---NRNGQLLQTLTG--HSSSVRGVAFSPDGQTIASASDDKTVK 123
Query: 170 VFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIY 229
+++ + G+ + L S +GV +SP G T+A + +
Sbjct: 124 LWN-------------------RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVK 164
Query: 230 F 230
Sbjct: 165 L 165
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 71/161 (44%), Gaps = 12/161 (7%)
Query: 17 AWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQK----HDQIVSGIDWSVRSNRIVTV 72
A++P +A +N+ +Y L +K E + +K H +S ++ +I+T
Sbjct: 113 AYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTA 172
Query: 73 SHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKE--NKFAVGSGAKTVCICYYEQE 130
S D +W+ E + + + + LC+ +P E N F G K + ++
Sbjct: 173 SGDGTCALWDVESGQLLQSFHGHGAD--VLCLDLAPSETGNTFVSGGCDKKAMV--WDMR 228
Query: 131 NNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVF 171
+ V + H+S V SV ++P+ A+ S D CR++
Sbjct: 229 SGQCVQAF--ETHESDVNSVRYYPSGDAFASGSDDATCRLY 267
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 65/165 (39%), Gaps = 24/165 (14%)
Query: 49 VLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVW-----NQEGSEWVPTLVILRLNRAALC 103
L+ H V +DW RIV+ S D VW N+E + +P + +
Sbjct: 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWV-------MA 111
Query: 104 VQWSPKENKFAVGSGAKTVCICY---YEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLA 160
++P A G G C Y +++ N K H + +++ ++ +++ +
Sbjct: 112 CAYAPSGCAIACG-GLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQIL 170
Query: 161 TTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFS 205
T S DG C ++ E + S G +L LDL+ S
Sbjct: 171 TASGDGTCALWDV--------ESGQLLQSFHGHGADVLCLDLAPS 207
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 74/163 (45%), Gaps = 11/163 (6%)
Query: 18 WSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRN 77
+SPD +A + + I+ + E + + +LQ H+Q + +D+ +++V+ S DR
Sbjct: 131 FSPDGKFLATGAEDRLIRIWDI--ENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRT 188
Query: 78 SYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSK 137
+W+ + TL I V SP + K+ + +G+ + ++ E + V +
Sbjct: 189 VRIWDLRTGQCSLTLSI---EDGVTTVAVSPGDGKY-IAAGSLDRAVRVWDSETGFLVER 244
Query: 138 LIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDI 180
L DS S H ++V+ + DG+ V + + V +
Sbjct: 245 L-----DSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKL 282
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 80/173 (46%), Gaps = 10/173 (5%)
Query: 1 MAAIAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGI 60
M +A H A ++ +SP+ +A + + I+ K+EK + H +S +
Sbjct: 19 MFTLAGHTKA--VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDV 74
Query: 61 DWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120
WS SN +V+ S D+ +W+ + + TL + C ++P+ N GS +
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 121 TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFST 173
+V I ++ + + L H V++V ++ + + ++S DG CR++ T
Sbjct: 133 SVRI--WDVKTGMCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 80/173 (46%), Gaps = 10/173 (5%)
Query: 1 MAAIAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGI 60
M +A H A ++ +SP+ +A + + I+ K+EK + H +S +
Sbjct: 19 MFTLAGHTKA--VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDV 74
Query: 61 DWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120
WS SN +V+ S D+ +W+ + + TL + C ++P+ N GS +
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 121 TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFST 173
+V I ++ + + L H V++V ++ + + ++S DG CR++ T
Sbjct: 133 SVRI--WDVKTGMCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 18 WSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRN 77
+SP+ +A + + I+ K+EK + H +S + WS SN +V+ S D+
Sbjct: 34 FSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKT 91
Query: 78 SYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSK 137
+W+ + + TL + C ++P+ N GS ++V I ++ + +
Sbjct: 92 LKIWDVSSGKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRI--WDVKTGKCLKT 147
Query: 138 LIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFST 173
L H V++V ++ + + ++S DG CR++ T
Sbjct: 148 L--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 18 WSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRN 77
+SP+ +A + + I+ K+EK + H +S + WS SN +V+ S D+
Sbjct: 34 FSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKT 91
Query: 78 SYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSK 137
+W+ + + TL + C ++P+ N GS ++V I ++ + +
Sbjct: 92 LKIWDVSSGKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRI--WDVKTGKCLKT 147
Query: 138 LIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFST 173
L H V++V ++ + + ++S DG CR++ T
Sbjct: 148 L--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 18 WSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRN 77
+SP+ +A + + I+ K+EK + H +S + WS SN +V+ S D+
Sbjct: 34 FSPNGEWLAASSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKT 91
Query: 78 SYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSK 137
+W+ + + TL + C ++P+ N GS ++V I ++ + +
Sbjct: 92 LKIWDVSSGKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRI--WDVKTGKCLKT 147
Query: 138 LIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFST 173
L H V++V ++ + + ++S DG CR++ T
Sbjct: 148 L--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 18 WSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRN 77
+SP+ +A + + I+ K+EK + H +S + WS SN +V+ S D+
Sbjct: 37 FSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKT 94
Query: 78 SYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSK 137
+W+ + + TL + C ++P+ N GS ++V I ++ + +
Sbjct: 95 LKIWDVSSGKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRI--WDVKTGKCLKT 150
Query: 138 LIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFST 173
L H V++V ++ + + ++S DG CR++ T
Sbjct: 151 L--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 184
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 18 WSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRN 77
+SP+ +A + + I+ K+EK + H +S + WS SN +V+ S D+
Sbjct: 30 FSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKT 87
Query: 78 SYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSK 137
+W+ + + TL + C ++P+ N GS ++V I ++ + +
Sbjct: 88 LKIWDVSSGKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRI--WDVKTGKCLKT 143
Query: 138 LIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFST 173
L H V++V ++ + + ++S DG CR++ T
Sbjct: 144 L--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 177
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 18 WSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRN 77
+SP+ +A + + I+ K+EK + H +S + WS SN +V+ S D+
Sbjct: 48 FSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKT 105
Query: 78 SYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSK 137
+W+ + + TL + C ++P+ N GS ++V I ++ + +
Sbjct: 106 LKIWDVSSGKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRI--WDVKTGKCLKT 161
Query: 138 LIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFST 173
L H V++V ++ + + ++S DG CR++ T
Sbjct: 162 L--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 195
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 18 WSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRN 77
+SP+ +A + + I+ K+EK + H +S + WS SN +V+ S D+
Sbjct: 37 FSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKT 94
Query: 78 SYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSK 137
+W+ + + TL + C ++P+ N GS ++V I ++ + +
Sbjct: 95 LKIWDVSSGKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRI--WDVKTGKCLKT 150
Query: 138 LIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFST 173
L H V++V ++ + + ++S DG CR++ T
Sbjct: 151 L--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 184
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 18 WSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRN 77
+SP+ +A + + I+ K+EK + H +S + WS SN +V+ S D+
Sbjct: 36 FSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKT 93
Query: 78 SYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSK 137
+W+ + + TL + C ++P+ N GS ++V I ++ + +
Sbjct: 94 LKIWDVSSGKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRI--WDVKTGKCLKT 149
Query: 138 LIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFST 173
L H V++V ++ + + ++S DG CR++ T
Sbjct: 150 L--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 183
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 18 WSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRN 77
+SP+ +A + + I+ K+EK + H +S + WS SN +V+ S D+
Sbjct: 37 FSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKT 94
Query: 78 SYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSK 137
+W+ + + TL + C ++P+ N GS ++V I ++ + +
Sbjct: 95 LKIWDVSSGKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRI--WDVKTGKCLKT 150
Query: 138 LIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFST 173
L H V++V ++ + + ++S DG CR++ T
Sbjct: 151 L--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 184
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 18 WSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRN 77
+SP+ +A + + I+ K+EK + H +S + WS SN +V+ S D+
Sbjct: 32 FSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKT 89
Query: 78 SYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSK 137
+W+ + + TL + C ++P+ N GS ++V I ++ + +
Sbjct: 90 LKIWDVSSGKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRI--WDVKTGKCLKT 145
Query: 138 LIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFST 173
L H V++V ++ + + ++S DG CR++ T
Sbjct: 146 L--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 179
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 18 WSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRN 77
+SP+ +A + + I+ K+EK + H +S + WS SN +V+ S D+
Sbjct: 31 FSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKT 88
Query: 78 SYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSK 137
+W+ + + TL + C ++P+ N GS ++V I ++ + +
Sbjct: 89 LKIWDVSSGKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRI--WDVKTGKCLKT 144
Query: 138 LIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFST 173
L H V++V ++ + + ++S DG CR++ T
Sbjct: 145 L--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 178
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 18 WSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRN 77
+SP+ +A + + I+ K+EK + H +S + WS SN +V+ S D+
Sbjct: 27 FSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKT 84
Query: 78 SYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSK 137
+W+ + + TL + C ++P+ N GS ++V I ++ + +
Sbjct: 85 LKIWDVSSGKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRI--WDVKTGKCLKT 140
Query: 138 LIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFST 173
L H V++V ++ + + ++S DG CR++ T
Sbjct: 141 L--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 174
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 18 WSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRN 77
+SP+ +A + + I+ K+EK + H +S + WS SN +V+ S D+
Sbjct: 31 FSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKT 88
Query: 78 SYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSK 137
+W+ + + TL + C ++P+ N GS ++V I ++ + +
Sbjct: 89 LKIWDVSSGKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRI--WDVKTGKCLKT 144
Query: 138 LIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFST 173
L H V++V ++ + + ++S DG CR++ T
Sbjct: 145 L--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 178
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 18 WSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRN 77
+SP+ +A + + I+ K+EK + H +S + WS SN +V+ S D+
Sbjct: 55 FSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKT 112
Query: 78 SYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSK 137
+W+ + + TL + C ++P+ N GS ++V I ++ + +
Sbjct: 113 LKIWDVSSGKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRI--WDVKTGKCLKT 168
Query: 138 LIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFST 173
L H V++V ++ + + ++S DG CR++ T
Sbjct: 169 L--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 202
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 18 WSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRN 77
+SP+ +A + + I+ K+EK + H +S + WS SN +V+ S D+
Sbjct: 53 FSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKT 110
Query: 78 SYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSK 137
+W+ + + TL + C ++P+ N GS ++V I ++ + +
Sbjct: 111 LKIWDVSSGKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRI--WDVKTGKCLKT 166
Query: 138 LIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFST 173
L H V++V ++ + + ++S DG CR++ T
Sbjct: 167 L--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 200
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 61/275 (22%), Positives = 104/275 (37%), Gaps = 27/275 (9%)
Query: 25 VAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVR--SNRIVTVSHDRNSYVWN 82
+A C ++ + I+++ E + + L H+ V +DW+ + + S+D +W
Sbjct: 24 MATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK 83
Query: 83 QEGSEWVPTLVILRLNRAALCVQWSPKE--NKFAVGSGAKTVCICYYEQENNWWVSKLIR 140
+E W V + + VQW+P E V S V + +++ S +I
Sbjct: 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT--TSPIII 141
Query: 141 KRHDSSVTSVAWHPNNVFLATTSTDG------KCRVFSTFIKGVDIKEKKEGTSSDTKFG 194
H V S +W P AT DG + R F T +K K + + T
Sbjct: 142 DAHAIGVNSASWAP-----ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL 196
Query: 195 EQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSM----IYFVDDVGPSP----LAQNVAFR 246
E L+ W V WSP+ +Y+ S I + D P L + F
Sbjct: 197 ESTLE--GHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFP 254
Query: 247 DLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIW 281
D+ R +S ++ G D ++ + G W
Sbjct: 255 DVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW 289
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 98/255 (38%), Gaps = 48/255 (18%)
Query: 7 HQFAQCITCH---AWSPDHA------MVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIV 57
H+ +T H W D A ++A C + +V I+K +W ++ V H V
Sbjct: 43 HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASV 102
Query: 58 SGIDWSVRS---NRIVTVSHDRNSYVWNQEGSEWVPTLV---ILRLNRAALCVQWSP--- 108
+ + W+ +V S + S V +E P ++ + +N A+ W+P
Sbjct: 103 NSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS----WAPATI 158
Query: 109 ----------KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNV- 157
+ KF G V I Y + +V + + H V VAW P +
Sbjct: 159 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 218
Query: 158 --FLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPS 215
++A+ S D C +++ ++ ++G T E+ L + WS S
Sbjct: 219 RSYMASVSQDRTCIIWT--------QDNEQGPWKKTLLKEEKFPDVL-----WRASWSLS 265
Query: 216 GNTLAYVGHNSMIYF 230
GN LA G ++ +
Sbjct: 266 GNVLALSGGDNKVTL 280
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 61/275 (22%), Positives = 104/275 (37%), Gaps = 27/275 (9%)
Query: 25 VAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVR--SNRIVTVSHDRNSYVWN 82
+A C ++ + I+++ E + + L H+ V +DW+ + + S+D +W
Sbjct: 24 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83
Query: 83 QEGSEWVPTLVILRLNRAALCVQWSPKENK--FAVGSGAKTVCICYYEQENNWWVSKLIR 140
+E W V + + VQW+P E V S V + +++ S +I
Sbjct: 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT--TSPIII 141
Query: 141 KRHDSSVTSVAWHPNNVFLATTSTDG------KCRVFSTFIKGVDIKEKKEGTSSDTKFG 194
H V S +W P AT DG + R F T +K K + + T
Sbjct: 142 DAHAIGVNSASWAP-----ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL 196
Query: 195 EQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSM----IYFVDDVGPSP----LAQNVAFR 246
E L+ W V WSP+ +Y+ S I + D P L + F
Sbjct: 197 ESTLE--GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFP 254
Query: 247 DLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIW 281
D+ R +S ++ G D ++ + G W
Sbjct: 255 DVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW 289
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 56/255 (21%), Positives = 98/255 (38%), Gaps = 48/255 (18%)
Query: 7 HQFAQCITCH---AWSPDHA------MVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIV 57
H+ +T H W D A ++A C + +V I+K +W ++ V H V
Sbjct: 43 HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASV 102
Query: 58 SGIDWSVRSN---RIVTVSHDRNSYVWNQEGSEWVPTLV---ILRLNRAALCVQWSP--- 108
+ + W+ +V S + S V +E P ++ + +N A+ W+P
Sbjct: 103 NSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS----WAPATI 158
Query: 109 ----------KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNV- 157
+ KF G V I Y + +V + + H V VAW P +
Sbjct: 159 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 218
Query: 158 --FLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPS 215
+LA+ S D C +++ ++ ++G T E+ L + WS S
Sbjct: 219 RSYLASVSQDRTCIIWT--------QDNEQGPWKKTLLKEEKFPDVL-----WRASWSLS 265
Query: 216 GNTLAYVGHNSMIYF 230
GN LA G ++ +
Sbjct: 266 GNVLALSGGDNKVTL 280
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 61/275 (22%), Positives = 104/275 (37%), Gaps = 27/275 (9%)
Query: 25 VAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVR--SNRIVTVSHDRNSYVWN 82
+A C ++ + I+++ E + + L H+ V +DW+ + + S+D +W
Sbjct: 26 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 85
Query: 83 QEGSEWVPTLVILRLNRAALCVQWSPKENK--FAVGSGAKTVCICYYEQENNWWVSKLIR 140
+E W V + + VQW+P E V S V + +++ S +I
Sbjct: 86 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT--TSPIII 143
Query: 141 KRHDSSVTSVAWHPNNVFLATTSTDG------KCRVFSTFIKGVDIKEKKEGTSSDTKFG 194
H V S +W P AT DG + R F T +K K + + T
Sbjct: 144 DAHAIGVNSASWAP-----ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL 198
Query: 195 EQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSM----IYFVDDVGPSP----LAQNVAFR 246
E L+ W V WSP+ +Y+ S I + D P L + F
Sbjct: 199 ESTLE--GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFP 256
Query: 247 DLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIW 281
D+ R +S ++ G D ++ + G W
Sbjct: 257 DVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW 291
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 56/255 (21%), Positives = 98/255 (38%), Gaps = 48/255 (18%)
Query: 7 HQFAQCITCH---AWSPDHA------MVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIV 57
H+ +T H W D A ++A C + +V I+K +W ++ V H V
Sbjct: 45 HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASV 104
Query: 58 SGIDWSVRSN---RIVTVSHDRNSYVWNQEGSEWVPTLV---ILRLNRAALCVQWSP--- 108
+ + W+ +V S + S V +E P ++ + +N A+ W+P
Sbjct: 105 NSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS----WAPATI 160
Query: 109 ----------KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNV- 157
+ KF G V I Y + +V + + H V VAW P +
Sbjct: 161 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 220
Query: 158 --FLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPS 215
+LA+ S D C +++ ++ ++G T E+ L + WS S
Sbjct: 221 RSYLASVSQDRTCIIWT--------QDNEQGPWKKTLLKEEKFPDVL-----WRASWSLS 267
Query: 216 GNTLAYVGHNSMIYF 230
GN LA G ++ +
Sbjct: 268 GNVLALSGGDNKVTL 282
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 83/209 (39%), Gaps = 19/209 (9%)
Query: 25 VAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRS--NRIVTVSHDRNSYVWN 82
+A C ++ + I+++ E + + L H+ V +DW+ + + S+D +W
Sbjct: 24 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83
Query: 83 QEGSEWVPTLVILRLNRAALCVQWSPKENK--FAVGSGAKTVCICYYEQENNWWVSKLIR 140
+E W V + + VQW+P E V S V + +++ N S +I
Sbjct: 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE--NGTTSPIII 141
Query: 141 KRHDSSVTSVAWHPNNVFLATTSTDG------KCRVFSTFIKGVDIKEKKEGTSSDTKFG 194
H V S +W P AT DG + R F T +K K + + T
Sbjct: 142 DAHAIGVNSASWAP-----ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL 196
Query: 195 EQILQLDLSFSWAFGVKWSPSGNTLAYVG 223
E L+ W V WSP+ +Y+
Sbjct: 197 ESTLE--GHSDWVRDVAWSPTVLLRSYLA 223
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 98/254 (38%), Gaps = 48/254 (18%)
Query: 6 VHQFAQCITCH---AWSPDHA------MVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQI 56
H+ +T H W D A ++A C + +V I+K +W ++ V H
Sbjct: 42 THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSAS 101
Query: 57 VSGIDWSVRSN---RIVTVSHDRNSYVWNQEGSEWVPTLV---ILRLNRAALCVQWSP-- 108
V+ + W+ +V S + S V +E P ++ + +N A+ W+P
Sbjct: 102 VNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS----WAPAT 157
Query: 109 -----------KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNV 157
+ KF G V I Y + +V + + H V VAW P +
Sbjct: 158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL 217
Query: 158 ---FLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSP 214
+LA+ S D C +++ ++ ++G T E+ L + WS
Sbjct: 218 LRSYLASVSQDRTCIIWT--------QDNEQGPWKKTLLKEEKFPDVL-----WRASWSL 264
Query: 215 SGNTLAYVGHNSMI 228
SGN LA G ++ +
Sbjct: 265 SGNVLALSGGDNKV 278
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/274 (22%), Positives = 102/274 (37%), Gaps = 27/274 (9%)
Query: 26 AFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVR--SNRIVTVSHDRNSYVWNQ 83
A C ++ + I+++ E + + L H+ V +DW+ + + S+D +W +
Sbjct: 25 ATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKE 84
Query: 84 EGSEWVPTLVILRLNRAALCVQWSPKE--NKFAVGSGAKTVCICYYEQENNWWVSKLIRK 141
E W V + + VQW+P E V S V + +++ S +I
Sbjct: 85 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVSVVEFKENGT--TSPIIID 142
Query: 142 RHDSSVTSVAWHPNNVFLATTSTDG------KCRVFSTFIKGVDIKEKKEGTSSDTKFGE 195
H V S +W P AT DG + R F T +K K + + T E
Sbjct: 143 AHAIGVNSASWAP-----ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE 197
Query: 196 QILQLDLSFSWAFGVKWSPSGNTLAYVGHNSM----IYFVDDVGPSP----LAQNVAFRD 247
L+ W V WSP+ +Y S I + D P L + F D
Sbjct: 198 STLE--GHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD 255
Query: 248 LPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIW 281
+ R +S ++ G D ++ + G W
Sbjct: 256 VLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW 289
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 97/255 (38%), Gaps = 48/255 (18%)
Query: 7 HQFAQCITCH---AWSPDHA------MVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIV 57
H+ +T H W D A ++A C + +V I+K +W ++ V H V
Sbjct: 43 HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASV 102
Query: 58 SGIDWSVRS---NRIVTVSHDRNSYVWNQEGSEWVPTLV---ILRLNRAALCVQWSP--- 108
+ + W+ +V S + S V +E P ++ + +N A+ W+P
Sbjct: 103 NSVQWAPHEYGPXLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS----WAPATI 158
Query: 109 ----------KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNV- 157
+ KF G V I Y + +V + + H V VAW P +
Sbjct: 159 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 218
Query: 158 --FLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPS 215
+ A+ S D C +++ ++ ++G T E+ L + WS S
Sbjct: 219 RSYXASVSQDRTCIIWT--------QDNEQGPWKKTLLKEEKFPDVL-----WRASWSLS 265
Query: 216 GNTLAYVGHNSMIYF 230
GN LA G ++ +
Sbjct: 266 GNVLALSGGDNKVTL 280
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 82/179 (45%), Gaps = 29/179 (16%)
Query: 52 KHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKEN 111
++D ++ +DWS S ++ V+ D + Y+W+ + + L + + V W + N
Sbjct: 23 RNDYYLNLVDWS--SGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGN 80
Query: 112 KFAVGSGAKTVCICYYEQENNWWVSKLIRK--RHDSSVTSVAWHPNNVFLATTSTDGKCR 169
AVG+ + V + +Q+ K +R H + V S++W N+ L++ S G
Sbjct: 81 YLAVGTSSAEVQLWDVQQQ------KRLRNMTSHSARVGSLSW--NSYILSSGSRSG--- 129
Query: 170 VFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMI 228
I D++ + ++ + +++ G++W+P G LA G+++++
Sbjct: 130 ----HIHHHDVRVAEHHVATLSGHSQEVC----------GLRWAPDGRHLASGGNDNLV 174
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/155 (20%), Positives = 63/155 (40%), Gaps = 7/155 (4%)
Query: 1 MAAIAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGI 60
+ + + Q + I+ AW + +A ++ EV ++ + Q+K +L + H V +
Sbjct: 58 LQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK--RLRNMTSHSARVGSL 115
Query: 61 DWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALC-VQWSPKENKFAVGSGA 119
W N + S R+ ++ + + + L + +C ++W+P A G
Sbjct: 116 SW----NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGND 171
Query: 120 KTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHP 154
V + WV +H +V +VAW P
Sbjct: 172 NLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 206
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 82/179 (45%), Gaps = 29/179 (16%)
Query: 52 KHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKEN 111
++D ++ +DWS S ++ V+ D + Y+W+ + + L + + V W + N
Sbjct: 114 RNDYYLNLVDWS--SGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGN 171
Query: 112 KFAVGSGAKTVCICYYEQENNWWVSKLIRK--RHDSSVTSVAWHPNNVFLATTSTDGKCR 169
AVG+ + V + +Q+ K +R H + V S++W N+ L++ S G
Sbjct: 172 YLAVGTSSAEVQLWDVQQQ------KRLRNMTSHSARVGSLSW--NSYILSSGSRSG--- 220
Query: 170 VFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMI 228
I D++ + ++ + +++ G++W+P G LA G+++++
Sbjct: 221 ----HIHHHDVRVAEHHVATLSGHSQEVC----------GLRWAPDGRHLASGGNDNLV 265
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/152 (20%), Positives = 62/152 (40%), Gaps = 7/152 (4%)
Query: 4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWS 63
+ + Q + I+ AW + +A ++ EV ++ + Q+K +L + H V + W
Sbjct: 152 LQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK--RLRNMTSHSARVGSLSW- 208
Query: 64 VRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALC-VQWSPKENKFAVGSGAKTV 122
N + S R+ ++ + + + L + +C ++W+P A G V
Sbjct: 209 ---NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLV 265
Query: 123 CICYYEQENNWWVSKLIRKRHDSSVTSVAWHP 154
+ WV +H +V +VAW P
Sbjct: 266 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 297
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 82/179 (45%), Gaps = 29/179 (16%)
Query: 52 KHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKEN 111
++D ++ +DWS S ++ V+ D + Y+W+ + + L + + V W + N
Sbjct: 103 RNDYYLNLVDWS--SGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGN 160
Query: 112 KFAVGSGAKTVCICYYEQENNWWVSKLIRK--RHDSSVTSVAWHPNNVFLATTSTDGKCR 169
AVG+ + V + +Q+ K +R H + V S++W N+ L++ S G
Sbjct: 161 YLAVGTSSAEVQLWDVQQQ------KRLRNMTSHSARVGSLSW--NSYILSSGSRSG--- 209
Query: 170 VFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMI 228
I D++ + ++ + +++ G++W+P G LA G+++++
Sbjct: 210 ----HIHHHDVRVAEHHVATLSGHSQEVC----------GLRWAPDGRHLASGGNDNLV 254
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/152 (20%), Positives = 62/152 (40%), Gaps = 7/152 (4%)
Query: 4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWS 63
+ + Q + I+ AW + +A ++ EV ++ + Q+K +L + H V + W
Sbjct: 141 LQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK--RLRNMTSHSARVGSLSW- 197
Query: 64 VRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALC-VQWSPKENKFAVGSGAKTV 122
N + S R+ ++ + + + L + +C ++W+P A G V
Sbjct: 198 ---NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLV 254
Query: 123 CICYYEQENNWWVSKLIRKRHDSSVTSVAWHP 154
+ WV +H +V +VAW P
Sbjct: 255 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 286
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 83/215 (38%), Gaps = 16/215 (7%)
Query: 1 MAAIAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQ-----KHDQ 55
MA+I + + + WS D + + + I KL+ K++ ++ H +
Sbjct: 1 MASINLIKSLKLYKEKIWSFDFSQGILATGSTDRKI-KLVSVKYDDFTLIDVLDETAHKK 59
Query: 56 IVSGIDWSVRSNRIVTVSHDRNSYVWNQEGS-----EWVPTLVILRLNRAALCVQWSPKE 110
+ + W ++ + S D +W +E S E +I V WS
Sbjct: 60 AIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG 119
Query: 111 NKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRV 170
A S K+V I ++ + + + H V V WHP+ LA++S D R+
Sbjct: 120 YYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRI 179
Query: 171 FSTFIKG---VDIKEKKEGT--SSDTKFGEQILQL 200
+ + V + EGT SSD E + +L
Sbjct: 180 WKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRL 214
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 65/153 (42%), Gaps = 6/153 (3%)
Query: 18 WSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRN 77
+S D +A C + + ++K E EKL ++ H+ V +S + I T S D+
Sbjct: 630 FSQDGQRIASCGADKTLQVFK--AETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKK 687
Query: 78 SYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSK 137
+W+ + V T + C ++ K N + +G+ + ++ +
Sbjct: 688 VKIWDSATGKLVHTYD--EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNT 745
Query: 138 LIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRV 170
+ H +SV + P++ LA+ S DG R+
Sbjct: 746 MF--GHTNSVNHCRFSPDDELLASCSADGTLRL 776
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 65/153 (42%), Gaps = 6/153 (3%)
Query: 18 WSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRN 77
+S D +A C + + ++K E EKL ++ H+ V +S + I T S D+
Sbjct: 623 FSQDGQRIASCGADKTLQVFK--AETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKK 680
Query: 78 SYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSK 137
+W+ + V T + C ++ K N + +G+ + ++ +
Sbjct: 681 VKIWDSATGKLVHTYD--EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNT 738
Query: 138 LIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRV 170
+ H +SV + P++ LA+ S DG R+
Sbjct: 739 MF--GHTNSVNHCRFSPDDELLASCSADGTLRL 769
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 63/153 (41%), Gaps = 6/153 (3%)
Query: 18 WSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRN 77
+S D +A C + + ++K E EKL ++ H+ V +S I T S D+
Sbjct: 629 FSEDGQRIASCGADKTLQVFK--AETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKK 686
Query: 78 SYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSK 137
+WN E V T + C ++ + + +G+ + ++ +
Sbjct: 687 VKIWNSMTGELVHTYD--EHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNT 744
Query: 138 LIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRV 170
+ H +SV + P++ LA+ S DG ++
Sbjct: 745 MF--GHTNSVNHCRFSPDDKLLASCSADGTLKL 775
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 35.0 bits (79), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 4/134 (2%)
Query: 53 HDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENK 112
H + V + +S + +IV+ D VWN +G E + TL CV++SP +
Sbjct: 108 HTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKG-ECMHTLSRGAHTDWVSCVRFSPSLDA 166
Query: 113 FAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFS 172
+ SG + ++ V+ L K H + VTSV P+ A++ DG R++
Sbjct: 167 PVIVSGGWDNLVKVWDLATGRLVTDL--KGHTNYVTSVTVSPDGSLCASSDKDGVARLWD 224
Query: 173 TFIKGVDIKEKKEG 186
KG + E G
Sbjct: 225 -LTKGEALSEMAAG 237
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 74/200 (37%), Gaps = 18/200 (9%)
Query: 33 EVHIYKLIQEKWEKLHVLQKHDQIVSG----IDWSVRSNRIVTVSHDRNSYVWNQEGSEW 88
+VH I + + H+L+ + SG I W S RI V R +
Sbjct: 78 DVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG 137
Query: 89 VPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVT 148
+ RA V + P F + SG+ + +E + S H V
Sbjct: 138 TSNGNLTGQARAMNSVDFKPSR-PFRIISGSDDNTVAIFEGPPFKFKSTF--GEHTKFVH 194
Query: 149 SVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAF 208
SV ++P+ A+T DG +++ GVD GT + F + L+ F
Sbjct: 195 SVRYNPDGSLFASTGGDGTIVLYN----GVD------GTKTGV-FEDDSLKNVAHSGSVF 243
Query: 209 GVKWSPSGNTLAYVGHNSMI 228
G+ WSP G +A + I
Sbjct: 244 GLTWSPDGTKIASASADKTI 263
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 5/141 (3%)
Query: 14 TCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVS 73
+C A S D VA +++VH+YKL ++ + H ++ + +S +V
Sbjct: 452 SCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV-HPAEITSVAFSNNGAFLVATD 510
Query: 74 HDRNSYVWNQEGS-EWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENN 132
R ++ + E T CV WSP + A GS +V + + ++
Sbjct: 511 QSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD 570
Query: 133 WWVSKLIRKRHD-SSVTSVAW 152
+ +I+ H SSV SV W
Sbjct: 571 HPI--IIKGAHAMSSVNSVIW 589
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 6/119 (5%)
Query: 45 EKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCV 104
++ LQ H V G+ W ++ + +D +W+ S +P N A V
Sbjct: 208 HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS--IPKFTKTNHNAAVKAV 265
Query: 105 QWSP-KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATT 162
W P + N A G G I ++ V+ + S VTS+ W P++ + +T
Sbjct: 266 AWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV---DAGSQVTSLIWSPHSKEIMST 321
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 54 DQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKF 113
D ++ +DWS + +V V+ +RN YVWN + V L + V+WS +
Sbjct: 93 DYYLNLLDWS--NLNVVAVALERNVYVWNADSGS-VSALAETDESTYVASVKWSHDGSFL 149
Query: 114 AVGSGAKTVCICYYEQE 130
+VG G V I E +
Sbjct: 150 SVGLGNGLVDIYDVESQ 166
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 25 VAFCPNNNEVHIYKLIQE--KWEKLHVLQKHDQIVSGIDW-SVRSNRIV-TVSHDRNSYV 80
VA C ++ + ++KL ++ WE + HD + IDW S RI+ + S+D+ +
Sbjct: 24 VATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 83
Query: 81 WNQE 84
W ++
Sbjct: 84 WEED 87
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 25 VAFCPNNNEVHIYKLIQE--KWEKLHVLQKHDQIVSGIDW-SVRSNRIV-TVSHDRNSYV 80
VA C ++ + ++KL ++ WE + HD + IDW S RI+ + S+D+ +
Sbjct: 26 VATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 85
Query: 81 WNQE 84
W ++
Sbjct: 86 WEED 89
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 124 ICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNN--VFLATTSTDGKCRVFSTFIKG 177
+ + +EN W HDSSV SV W P++ + LA S+DG + + +G
Sbjct: 83 VIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEG 138
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 93/236 (39%), Gaps = 49/236 (20%)
Query: 24 MVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYV--- 80
++A C + +V I++ WEK H HD V+ + W+ ++ + +
Sbjct: 73 ILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLL 132
Query: 81 -WNQEGSEWVPTLVILRLNRAAL----CVQWSP--------------KEN---KFAVGSG 118
+ EG +W + ++N A V W+P K N +FA G G
Sbjct: 133 TYTGEG-QW----EVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASG-G 186
Query: 119 AKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPN----NVFLATTSTDGKCRVFSTF 174
+ + E+E+ W + + H V VAW P+ +A+ S DG+ +++
Sbjct: 187 CDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTC- 245
Query: 175 IKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYF 230
+ SS+T + ++L W V WS + N LA G ++ +
Sbjct: 246 ----------DDASSNT-WSPKLLHKFNDVVWH--VSWSITANILAVSGGDNKVTL 288
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 9/111 (8%)
Query: 31 NNEVHIYKLIQE-KWEKLHVLQKHDQIVSGIDWS----VRSNRIVTVSHDRNSYVW---N 82
+N + ++K ++ +W++ L+ H V + W+ + ++ I + S D ++W +
Sbjct: 188 DNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247
Query: 83 QEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNW 133
+ W P L + + N V WS N AV G V + + W
Sbjct: 248 ASSNTWSPKL-LHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQW 297
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 25 VAFCPNNNEVHIYKLIQE--KWEKLHVLQKHDQIVSGIDW-SVRSNRIV-TVSHDRNSYV 80
VA C ++ + ++KL ++ WE + HD + IDW S RI+ + S+D+ +
Sbjct: 26 VATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 85
Query: 81 WNQE 84
W ++
Sbjct: 86 WEED 89
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 6 VHQFAQCITCHAWSP---DHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDW 62
V F + + H SP H +VA +V + L H+LQ H Q + + W
Sbjct: 137 VFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS--HILQGHRQEILAVSW 194
Query: 63 SVRSNRIV-TVSHDRNSYVWN 82
S R + I+ T S D +W+
Sbjct: 195 SPRYDYILATASADSRVKLWD 215
>pdb|2QZB|A Chain A, Crystal Structure Of The Uncharacterized Protein Yfey From
Escherichia Coli
pdb|2QZB|B Chain B, Crystal Structure Of The Uncharacterized Protein Yfey From
Escherichia Coli
Length = 166
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 271 MVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGND--AVESSRT 328
MV D+ G + I LD + +G K G+ FS+ + K +G + G+D AVE +
Sbjct: 70 MVINGDQ-GTISRIDVLDSDIPADTGVKIGTPFSDLYSKAFGNCQKADGDDNRAVE-CKA 127
Query: 329 RGGTHVN 335
G H++
Sbjct: 128 EGSQHIS 134
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 143 HDSSVTSVAWHPNNVFLATTSTDGKCRVF 171
H+S + ++ + PN AT S D CR+F
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLF 253
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 143 HDSSVTSVAWHPNNVFLATTSTDGKCRVF 171
H+S + ++ + PN AT S D CR+F
Sbjct: 236 HESDINAICFFPNGNAFATGSDDATCRLF 264
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 143 HDSSVTSVAWHPNNVFLATTSTDGKCRVF 171
H+S + ++ + PN AT S D CR+F
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLF 253
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 143 HDSSVTSVAWHPNNVFLATTSTDGKCRVF 171
H+S + ++ + PN AT S D CR+F
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLF 253
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 143 HDSSVTSVAWHPNNVFLATTSTDGKCRVF 171
H+S + ++ + PN AT S D CR+F
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLF 253
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 51/126 (40%), Gaps = 10/126 (7%)
Query: 49 VLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSP 108
LQ H V +DW+ N IV+ S D VWN S+ T I + ++P
Sbjct: 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ--KTHAIKLHCPWVMECAFAP 118
Query: 109 KENKFAVGSGAKTVCICY-----YEQENNWWVSKLIRKRHDSSVTSVAWHPNN-VFLATT 162
A G G + C + +++ N VS+++ H +S + P+ L T
Sbjct: 119 NGQSVACG-GLDSACSIFNLSSQADRDGNMPVSRVLTG-HKGYASSCQYVPDQETRLITG 176
Query: 163 STDGKC 168
S D C
Sbjct: 177 SGDQTC 182
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 143 HDSSVTSVAWHPNNVFLATTSTDGKCRVF 171
H+ + SV + P+ T S DG CR+F
Sbjct: 248 HEGDINSVKFFPDGQRFGTGSDDGTCRLF 276
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 35/172 (20%), Positives = 66/172 (38%), Gaps = 21/172 (12%)
Query: 13 ITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTV 72
+TC AWS D + N E+ ++ + L+VL H + + W+ I+++
Sbjct: 111 VTCLAWSHDGNSIVTGVENGELRLW---NKTGALLNVLNFHRAPIVSVKWNKDGTHIISM 167
Query: 73 SHDRNSYVWN-------------QEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGA 119
+ + +WN + G + + V+W ++KF + G
Sbjct: 168 DVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWV-DDDKFVI-PGP 225
Query: 120 KTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVF 171
K Y E KLI H ++ + ++ N L + S DG R++
Sbjct: 226 KGAIFVYQITEKT-PTGKLI--GHHGPISVLEFNDTNKLLLSASDDGTLRIW 274
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,072,451
Number of Sequences: 62578
Number of extensions: 500131
Number of successful extensions: 1521
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1304
Number of HSP's gapped (non-prelim): 147
length of query: 379
length of database: 14,973,337
effective HSP length: 100
effective length of query: 279
effective length of database: 8,715,537
effective search space: 2431634823
effective search space used: 2431634823
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)