Query 016982
Match_columns 379
No_of_seqs 610 out of 1830
Neff 11.8
Searched_HMMs 46136
Date Fri Mar 29 04:34:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016982.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016982hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 3.2E-54 7E-59 338.0 26.0 297 4-377 109-447 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 2.7E-52 5.9E-57 331.0 23.0 282 8-367 173-458 (459)
3 KOG0271 Notchless-like WD40 re 100.0 2.3E-50 4.9E-55 316.5 24.3 287 4-367 151-479 (480)
4 KOG0286 G-protein beta subunit 100.0 5.1E-46 1.1E-50 282.1 32.6 287 4-367 49-343 (343)
5 KOG0645 WD40 repeat protein [G 100.0 1.5E-44 3.2E-49 271.3 32.5 298 4-369 8-311 (312)
6 KOG0279 G protein beta subunit 100.0 4.5E-44 9.8E-49 269.8 32.1 299 4-369 9-313 (315)
7 KOG0315 G-protein beta subunit 100.0 6.8E-44 1.5E-48 264.7 28.8 279 23-377 11-296 (311)
8 KOG0272 U4/U6 small nuclear ri 100.0 8.4E-46 1.8E-50 294.2 18.3 244 4-274 211-458 (459)
9 KOG0284 Polyadenylation factor 100.0 8.5E-46 1.8E-50 293.0 17.0 284 9-369 95-380 (464)
10 KOG1523 Actin-related protein 100.0 1E-42 2.2E-47 267.6 26.1 359 1-368 1-361 (361)
11 KOG0318 WD40 repeat stress pro 100.0 2.5E-40 5.5E-45 270.1 33.4 296 5-369 185-602 (603)
12 KOG0263 Transcription initiati 100.0 2.3E-41 5E-46 289.1 27.1 247 6-277 374-650 (707)
13 KOG0295 WD40 repeat-containing 100.0 1.7E-41 3.7E-46 264.9 23.9 287 4-368 102-405 (406)
14 KOG0285 Pleiotropic regulator 100.0 7.3E-41 1.6E-45 261.0 26.8 295 5-370 146-440 (460)
15 KOG0265 U5 snRNP-specific prot 100.0 1.8E-40 4E-45 252.9 27.9 287 4-367 41-336 (338)
16 KOG0273 Beta-transducin family 100.0 2.1E-40 4.5E-45 267.1 27.6 295 5-377 173-490 (524)
17 KOG0273 Beta-transducin family 100.0 7.4E-40 1.6E-44 263.9 29.6 279 10-369 235-523 (524)
18 KOG0279 G protein beta subunit 100.0 2.8E-39 6E-44 244.0 28.6 259 44-379 5-272 (315)
19 cd00200 WD40 WD40 domain, foun 100.0 1.7E-38 3.7E-43 265.7 36.7 286 4-367 3-289 (289)
20 KOG0315 G-protein beta subunit 100.0 3.1E-39 6.8E-44 239.9 27.2 255 6-279 36-291 (311)
21 KOG0291 WD40-repeat-containing 100.0 1.4E-38 3E-43 270.5 32.8 312 10-378 307-621 (893)
22 KOG0282 mRNA splicing factor [ 100.0 1.1E-40 2.4E-45 269.6 18.1 288 4-367 208-503 (503)
23 KOG0293 WD40 repeat-containing 100.0 2.3E-39 5E-44 257.1 24.0 293 4-371 218-515 (519)
24 KOG0263 Transcription initiati 100.0 1.4E-39 3E-44 278.3 24.3 207 4-236 445-651 (707)
25 KOG0296 Angio-associated migra 100.0 5.4E-38 1.2E-42 245.5 30.1 307 2-369 56-398 (399)
26 KOG0266 WD40 repeat-containing 100.0 5.2E-38 1.1E-42 274.8 32.6 284 10-369 159-454 (456)
27 KOG0286 G-protein beta subunit 100.0 2E-37 4.4E-42 235.5 29.6 261 45-377 46-311 (343)
28 KOG0640 mRNA cleavage stimulat 100.0 1.1E-38 2.3E-43 244.6 21.1 295 5-369 107-426 (430)
29 KOG0291 WD40-repeat-containing 100.0 2.4E-36 5.3E-41 256.9 34.9 332 4-370 139-509 (893)
30 PLN00181 protein SPA1-RELATED; 100.0 3.8E-36 8.2E-41 282.2 39.9 299 5-368 478-792 (793)
31 KOG0281 Beta-TrCP (transducin 100.0 2.8E-39 6E-44 251.6 13.9 283 10-371 197-479 (499)
32 KOG0643 Translation initiation 100.0 1.6E-36 3.5E-41 227.8 27.4 306 1-370 1-318 (327)
33 KOG0645 WD40 repeat protein [G 100.0 1.8E-36 4E-41 227.9 27.4 242 8-275 59-310 (312)
34 KOG0319 WD40-repeat-containing 100.0 4.9E-37 1.1E-41 260.5 27.0 293 5-370 318-620 (775)
35 KOG0285 Pleiotropic regulator 100.0 1.6E-37 3.5E-42 242.4 21.9 257 44-377 141-397 (460)
36 KOG0284 Polyadenylation factor 100.0 1.1E-38 2.4E-43 252.8 14.6 245 5-276 133-380 (464)
37 KOG0318 WD40 repeat stress pro 100.0 3.2E-35 7E-40 240.4 33.0 293 4-375 53-356 (603)
38 KOG0306 WD40-repeat-containing 100.0 5.1E-35 1.1E-39 248.8 28.7 291 3-370 366-665 (888)
39 KOG0295 WD40 repeat-containing 100.0 2.9E-36 6.4E-41 235.7 19.4 244 5-274 145-404 (406)
40 KOG0277 Peroxisomal targeting 100.0 1.6E-35 3.6E-40 220.8 21.8 283 13-368 11-308 (311)
41 KOG0313 Microtubule binding pr 100.0 5.8E-35 1.3E-39 229.7 25.7 287 6-369 101-418 (423)
42 KOG0276 Vesicle coat complex C 100.0 6.3E-35 1.4E-39 243.5 26.8 247 5-277 8-258 (794)
43 KOG1332 Vesicle coat complex C 100.0 1E-35 2.2E-40 220.7 19.2 263 6-285 7-295 (299)
44 KOG0266 WD40 repeat-containing 100.0 1.4E-34 2.9E-39 253.3 29.0 248 5-276 198-454 (456)
45 KOG0278 Serine/threonine kinas 100.0 4.8E-36 1E-40 223.3 16.8 291 3-373 7-301 (334)
46 KOG0316 Conserved WD40 repeat- 100.0 2.7E-34 5.9E-39 212.1 25.4 246 5-279 12-260 (307)
47 KOG0275 Conserved WD40 repeat- 100.0 4.8E-36 1E-40 231.7 16.5 285 7-367 210-507 (508)
48 KOG1407 WD40 repeat protein [F 100.0 6.5E-34 1.4E-38 213.1 26.9 246 4-276 14-261 (313)
49 KOG0316 Conserved WD40 repeat- 100.0 1.8E-34 4E-39 213.0 22.7 256 45-377 8-265 (307)
50 KOG0319 WD40-repeat-containing 100.0 4.2E-35 9.2E-40 248.8 21.8 252 2-276 357-619 (775)
51 KOG0289 mRNA splicing factor [ 100.0 1.2E-33 2.6E-38 226.0 27.3 285 10-368 219-505 (506)
52 KOG0292 Vesicle coat complex C 100.0 1.1E-34 2.3E-39 251.1 22.1 256 49-377 4-288 (1202)
53 KOG0277 Peroxisomal targeting 100.0 1.2E-34 2.6E-39 216.3 19.3 243 9-275 59-308 (311)
54 KOG0268 Sof1-like rRNA process 100.0 2.5E-35 5.3E-40 230.6 15.9 290 4-376 60-352 (433)
55 KOG0292 Vesicle coat complex C 100.0 1.5E-33 3.3E-38 244.0 27.0 263 9-279 8-283 (1202)
56 KOG0276 Vesicle coat complex C 100.0 1.4E-33 3E-38 235.5 22.8 251 48-373 7-261 (794)
57 KOG0305 Anaphase promoting com 100.0 1E-32 2.2E-37 232.1 27.7 273 16-370 183-462 (484)
58 KOG0282 mRNA splicing factor [ 100.0 1.2E-34 2.5E-39 234.8 15.1 261 45-378 205-471 (503)
59 KOG0973 Histone transcription 100.0 1.9E-32 4E-37 242.7 28.2 295 5-372 7-358 (942)
60 KOG0274 Cdc4 and related F-box 100.0 4.3E-32 9.4E-37 236.8 29.7 281 9-377 207-490 (537)
61 KOG0300 WD40 repeat-containing 100.0 1.6E-32 3.4E-37 211.7 23.3 298 5-372 143-479 (481)
62 KOG0283 WD40 repeat-containing 100.0 7.6E-33 1.6E-37 239.1 23.8 247 8-277 265-577 (712)
63 KOG0265 U5 snRNP-specific prot 100.0 2.6E-32 5.7E-37 208.5 23.2 245 4-272 84-334 (338)
64 cd00200 WD40 WD40 domain, foun 100.0 2E-31 4.4E-36 222.9 30.7 243 5-274 46-289 (289)
65 KOG0296 Angio-associated migra 100.0 1.4E-31 3.1E-36 209.7 27.3 303 45-377 55-364 (399)
66 KOG0772 Uncharacterized conser 100.0 3.2E-32 7E-37 222.5 24.6 244 5-266 162-428 (641)
67 PLN00181 protein SPA1-RELATED; 100.0 2.8E-31 6.1E-36 249.5 34.8 269 31-371 457-740 (793)
68 KOG0281 Beta-TrCP (transducin 100.0 7.2E-34 1.6E-38 221.5 14.2 240 4-278 231-479 (499)
69 PTZ00421 coronin; Provisional 100.0 3.3E-31 7.3E-36 231.0 31.1 231 4-258 69-314 (493)
70 KOG1446 Histone H3 (Lys4) meth 100.0 6E-30 1.3E-34 197.4 33.3 245 8-279 12-265 (311)
71 KOG0288 WD40 repeat protein Ti 100.0 5E-33 1.1E-37 221.1 16.3 285 4-367 169-459 (459)
72 KOG2096 WD40 repeat protein [G 100.0 1.9E-31 4.2E-36 205.6 24.3 299 3-367 79-400 (420)
73 PTZ00421 coronin; Provisional 100.0 5.3E-30 1.1E-34 223.5 36.5 247 11-279 21-293 (493)
74 KOG0310 Conserved WD40 repeat- 100.0 4E-31 8.8E-36 214.7 25.0 284 6-369 22-309 (487)
75 KOG0973 Histone transcription 100.0 5.9E-31 1.3E-35 233.3 26.1 251 5-278 64-357 (942)
76 KOG0641 WD40 repeat protein [G 100.0 3.7E-29 8.1E-34 184.2 31.2 292 7-369 29-349 (350)
77 KOG0313 Microtubule binding pr 100.0 6.8E-31 1.5E-35 206.9 23.3 252 4-276 138-418 (423)
78 KOG0306 WD40-repeat-containing 100.0 4.8E-31 1.1E-35 224.8 23.3 243 11-278 413-666 (888)
79 KOG0305 Anaphase promoting com 100.0 8E-31 1.7E-35 220.7 24.1 239 10-277 217-462 (484)
80 KOG0310 Conserved WD40 repeat- 100.0 6.5E-31 1.4E-35 213.5 22.2 239 6-272 64-304 (487)
81 KOG0283 WD40 repeat-containing 100.0 9.4E-31 2E-35 226.2 24.1 248 47-370 259-577 (712)
82 KOG0278 Serine/threonine kinas 100.0 6.5E-32 1.4E-36 201.3 14.2 247 4-279 53-300 (334)
83 PTZ00420 coronin; Provisional 100.0 1.1E-28 2.5E-33 216.1 34.2 226 28-278 50-295 (568)
84 KOG1063 RNA polymerase II elon 100.0 1.2E-29 2.5E-34 214.5 26.8 319 4-371 185-650 (764)
85 KOG0301 Phospholipase A2-activ 100.0 6.9E-30 1.5E-34 215.9 25.3 278 4-369 8-288 (745)
86 PTZ00420 coronin; Provisional 100.0 4.9E-29 1.1E-33 218.4 31.7 230 4-259 68-318 (568)
87 KOG0264 Nucleosome remodeling 100.0 2.6E-30 5.7E-35 208.3 21.8 266 51-369 121-404 (422)
88 KOG0293 WD40 repeat-containing 100.0 9.8E-31 2.1E-35 208.3 18.5 245 5-277 264-514 (519)
89 KOG0294 WD40 repeat-containing 100.0 4.2E-29 9E-34 192.4 26.4 269 24-371 3-283 (362)
90 KOG0264 Nucleosome remodeling 100.0 3.9E-30 8.4E-35 207.3 21.2 252 7-277 121-405 (422)
91 KOG0275 Conserved WD40 repeat- 100.0 9.4E-31 2E-35 202.6 16.1 253 54-377 213-475 (508)
92 KOG1446 Histone H3 (Lys4) meth 100.0 5E-28 1.1E-32 186.8 30.6 259 45-377 5-270 (311)
93 KOG0647 mRNA export protein (c 100.0 9.1E-30 2E-34 194.9 20.7 238 10-267 27-315 (347)
94 KOG2055 WD40 repeat protein [G 100.0 3.5E-29 7.5E-34 202.1 24.2 289 10-369 213-512 (514)
95 KOG1407 WD40 repeat protein [F 100.0 3.3E-29 7.2E-34 188.0 21.7 254 48-377 14-269 (313)
96 KOG1539 WD repeat protein [Gen 100.0 1.3E-28 2.8E-33 212.4 28.0 359 4-378 196-615 (910)
97 KOG0641 WD40 repeat protein [G 100.0 5.4E-28 1.2E-32 178.1 26.4 246 7-276 86-349 (350)
98 KOG0289 mRNA splicing factor [ 100.0 1E-28 2.3E-33 197.9 24.3 246 5-274 256-504 (506)
99 KOG0639 Transducin-like enhanc 100.0 1.8E-29 4E-34 206.0 20.0 285 6-368 415-703 (705)
100 KOG0308 Conserved WD40 repeat- 100.0 9.8E-30 2.1E-34 213.5 18.9 251 8-277 19-286 (735)
101 KOG0308 Conserved WD40 repeat- 100.0 2.2E-29 4.9E-34 211.4 20.2 324 5-378 68-402 (735)
102 KOG0294 WD40 repeat-containing 100.0 1.7E-28 3.7E-33 189.0 23.4 243 3-278 36-283 (362)
103 KOG0299 U3 snoRNP-associated p 100.0 9E-29 2E-33 199.7 22.7 262 47-371 135-412 (479)
104 KOG0299 U3 snoRNP-associated p 100.0 2.6E-28 5.7E-33 197.0 25.1 248 5-278 137-412 (479)
105 KOG1273 WD40 repeat protein [G 100.0 5.3E-28 1.1E-32 186.4 25.4 244 13-283 26-287 (405)
106 KOG0288 WD40 repeat protein Ti 100.0 2.3E-29 5E-34 200.4 17.7 238 5-273 214-458 (459)
107 KOG0643 Translation initiation 100.0 5.1E-28 1.1E-32 182.3 23.4 249 4-277 46-318 (327)
108 KOG2445 Nuclear pore complex c 100.0 1.4E-27 2.9E-32 183.5 26.0 270 6-290 9-332 (361)
109 KOG2048 WD40 repeat protein [G 100.0 5.5E-27 1.2E-31 198.0 31.5 284 10-369 25-319 (691)
110 KOG0274 Cdc4 and related F-box 100.0 5.1E-28 1.1E-32 211.4 25.8 240 5-279 244-485 (537)
111 KOG0269 WD40 repeat-containing 100.0 6.5E-29 1.4E-33 212.6 19.6 290 10-370 39-341 (839)
112 KOG1408 WD40 repeat protein [F 100.0 1.7E-27 3.7E-32 202.5 26.3 300 15-370 329-714 (1080)
113 KOG0640 mRNA cleavage stimulat 100.0 8.2E-29 1.8E-33 190.6 15.7 251 5-276 167-426 (430)
114 KOG0772 Uncharacterized conser 100.0 4.7E-28 1E-32 198.3 21.0 249 10-277 214-488 (641)
115 KOG4283 Transcription-coupled 100.0 5.4E-27 1.2E-31 179.3 24.8 300 7-368 40-364 (397)
116 KOG0301 Phospholipase A2-activ 100.0 6.3E-28 1.4E-32 204.2 21.4 249 44-376 4-254 (745)
117 KOG0647 mRNA export protein (c 100.0 3E-27 6.5E-32 181.2 22.8 257 52-376 25-288 (347)
118 KOG1036 Mitotic spindle checkp 100.0 2.7E-27 5.9E-32 182.0 22.5 243 10-267 13-294 (323)
119 KOG1332 Vesicle coat complex C 100.0 5.6E-28 1.2E-32 179.8 17.7 255 50-370 7-287 (299)
120 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 1.5E-25 3.2E-30 189.0 34.8 274 22-378 1-288 (300)
121 KOG0646 WD40 repeat protein [G 100.0 4E-27 8.7E-32 190.6 22.5 291 32-377 18-315 (476)
122 KOG0646 WD40 repeat protein [G 100.0 2.9E-27 6.3E-32 191.4 21.5 239 10-258 81-330 (476)
123 KOG0650 WD40 repeat nucleolar 100.0 1.7E-26 3.7E-31 192.5 26.1 294 4-366 394-732 (733)
124 KOG0269 WD40 repeat-containing 100.0 2.6E-28 5.7E-33 208.9 15.7 240 13-274 90-338 (839)
125 KOG2445 Nuclear pore complex c 100.0 8.3E-26 1.8E-30 173.8 27.4 274 51-369 10-318 (361)
126 KOG2106 Uncharacterized conser 100.0 2.3E-25 5.1E-30 182.2 31.6 236 10-276 246-521 (626)
127 KOG1036 Mitotic spindle checkp 100.0 1.9E-26 4.2E-31 177.3 23.5 248 54-378 13-271 (323)
128 KOG1063 RNA polymerase II elon 100.0 3.6E-26 7.8E-31 193.6 26.2 303 6-369 263-699 (764)
129 KOG0321 WD40 repeat-containing 100.0 2.8E-26 6E-31 192.6 23.8 298 14-370 53-392 (720)
130 KOG0267 Microtubule severing p 100.0 1.5E-28 3.3E-33 208.8 9.7 238 7-271 25-262 (825)
131 KOG0300 WD40 repeat-containing 100.0 2.3E-26 5E-31 177.8 20.3 264 35-370 129-429 (481)
132 KOG1539 WD repeat protein [Gen 99.9 6.3E-25 1.4E-29 189.9 28.9 287 7-369 240-648 (910)
133 KOG1274 WD40 repeat protein [G 99.9 4.3E-25 9.2E-30 192.9 27.9 244 7-277 10-263 (933)
134 KOG2048 WD40 repeat protein [G 99.9 4.4E-24 9.6E-29 180.6 32.9 209 4-234 62-275 (691)
135 KOG0268 Sof1-like rRNA process 99.9 6.7E-27 1.5E-31 183.5 13.8 246 46-373 58-306 (433)
136 KOG0302 Ribosome Assembly prot 99.9 2.1E-25 4.5E-30 176.1 22.0 245 7-268 148-431 (440)
137 KOG1009 Chromatin assembly com 99.9 1.2E-24 2.7E-29 173.4 26.2 312 6-371 8-374 (434)
138 KOG2106 Uncharacterized conser 99.9 3.2E-23 7E-28 169.8 33.6 285 7-368 197-520 (626)
139 KOG0639 Transducin-like enhanc 99.9 6.4E-26 1.4E-30 185.5 16.5 239 8-274 463-702 (705)
140 KOG4328 WD40 protein [Function 99.9 1.3E-24 2.8E-29 175.7 22.8 254 7-278 183-452 (498)
141 KOG1274 WD40 repeat protein [G 99.9 2.4E-24 5.2E-29 188.2 26.2 245 51-370 10-263 (933)
142 KOG2919 Guanine nucleotide-bin 99.9 2.3E-24 5E-29 167.0 22.7 248 13-279 52-330 (406)
143 KOG2055 WD40 repeat protein [G 99.9 8.5E-25 1.9E-29 177.0 21.1 248 10-276 257-512 (514)
144 KOG4283 Transcription-coupled 99.9 5.7E-24 1.2E-28 162.9 21.8 205 51-278 40-278 (397)
145 KOG0270 WD40 repeat-containing 99.9 7.8E-24 1.7E-28 170.7 23.6 241 15-278 130-406 (463)
146 KOG1408 WD40 repeat protein [F 99.9 7.9E-25 1.7E-29 186.5 18.4 245 9-278 458-715 (1080)
147 KOG2096 WD40 repeat protein [G 99.9 1.2E-23 2.5E-28 162.9 23.1 253 12-276 134-402 (420)
148 KOG4227 WD40 repeat protein [G 99.9 3.8E-24 8.3E-29 170.2 20.6 321 6-369 52-387 (609)
149 KOG1007 WD repeat protein TSSC 99.9 8.7E-24 1.9E-28 161.4 20.9 307 21-370 25-362 (370)
150 KOG0267 Microtubule severing p 99.9 5.1E-26 1.1E-30 193.6 9.0 196 4-225 64-259 (825)
151 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.3E-21 2.9E-26 164.9 33.5 239 10-279 30-282 (300)
152 KOG1188 WD40 repeat protein [G 99.9 1.9E-23 4.1E-28 163.1 19.4 197 23-238 41-246 (376)
153 KOG1034 Transcriptional repres 99.9 3E-22 6.6E-27 155.7 25.7 310 7-369 35-383 (385)
154 KOG4378 Nuclear protein COP1 [ 99.9 6E-24 1.3E-28 173.8 17.1 223 12-259 81-305 (673)
155 KOG1007 WD repeat protein TSSC 99.9 1.9E-23 4.1E-28 159.6 18.6 248 5-274 58-359 (370)
156 KOG0302 Ribosome Assembly prot 99.9 1.7E-23 3.8E-28 165.3 18.9 221 4-227 205-432 (440)
157 KOG0307 Vesicle coat complex C 99.9 1.1E-24 2.4E-29 194.7 13.6 251 9-279 63-330 (1049)
158 KOG2919 Guanine nucleotide-bin 99.9 2.9E-23 6.3E-28 161.0 19.5 243 10-274 104-367 (406)
159 KOG0270 WD40 repeat-containing 99.9 2.9E-23 6.2E-28 167.4 19.7 242 11-277 174-450 (463)
160 KOG1034 Transcriptional repres 99.9 1.5E-23 3.2E-28 162.9 16.1 259 8-274 87-381 (385)
161 KOG1538 Uncharacterized conser 99.9 8.9E-23 1.9E-27 173.0 20.7 272 12-370 14-294 (1081)
162 KOG0321 WD40 repeat-containing 99.9 1.5E-22 3.2E-27 170.4 20.8 257 6-278 96-393 (720)
163 KOG4378 Nuclear protein COP1 [ 99.9 1.1E-22 2.4E-27 166.4 19.5 262 31-370 11-281 (673)
164 KOG1445 Tumor-specific antigen 99.9 1.4E-22 3.1E-27 170.8 18.6 165 4-173 73-247 (1012)
165 KOG0290 Conserved WD40 repeat- 99.9 7.4E-22 1.6E-26 151.1 19.8 243 7-272 93-361 (364)
166 KOG1009 Chromatin assembly com 99.9 2.4E-21 5.1E-26 154.8 22.0 254 4-277 59-373 (434)
167 KOG4328 WD40 protein [Function 99.9 7.2E-22 1.6E-26 160.0 19.2 211 45-276 177-399 (498)
168 KOG0307 Vesicle coat complex C 99.9 3.9E-23 8.5E-28 185.0 12.7 288 14-372 10-330 (1049)
169 KOG1273 WD40 repeat protein [G 99.9 9.8E-21 2.1E-25 146.6 22.3 258 57-378 26-289 (405)
170 KOG0650 WD40 repeat nucleolar 99.9 2.5E-21 5.4E-26 162.0 20.5 249 45-368 391-679 (733)
171 KOG1963 WD40 repeat protein [G 99.9 5.5E-20 1.2E-24 160.7 29.0 294 7-370 202-539 (792)
172 COG2319 FOG: WD40 repeat [Gene 99.9 1.1E-18 2.3E-23 154.9 37.9 293 5-372 60-362 (466)
173 KOG0303 Actin-binding protein 99.9 6.2E-21 1.3E-25 152.0 20.2 232 3-257 74-319 (472)
174 PRK11028 6-phosphogluconolacto 99.9 1.4E-18 3E-23 147.9 34.7 237 26-278 6-260 (330)
175 KOG0322 G-protein beta subunit 99.9 6.2E-21 1.3E-25 144.1 16.9 297 4-368 8-322 (323)
176 KOG2110 Uncharacterized conser 99.9 1E-18 2.2E-23 138.4 29.5 235 10-277 5-249 (391)
177 KOG0290 Conserved WD40 repeat- 99.9 1.5E-19 3.3E-24 138.5 23.2 250 10-277 44-319 (364)
178 PRK11028 6-phosphogluconolacto 99.9 4.9E-18 1.1E-22 144.5 33.7 261 9-285 33-314 (330)
179 KOG0642 Cell-cycle nuclear pro 99.9 1.7E-20 3.7E-25 156.0 16.9 214 5-236 289-563 (577)
180 KOG0644 Uncharacterized conser 99.9 1.9E-21 4.2E-26 168.7 11.7 241 5-278 185-428 (1113)
181 KOG1538 Uncharacterized conser 99.9 2.2E-20 4.8E-25 158.6 17.7 240 4-275 47-292 (1081)
182 KOG0771 Prolactin regulatory e 99.9 2E-20 4.4E-25 150.4 15.8 201 14-235 148-355 (398)
183 KOG1334 WD40 repeat protein [G 99.9 2.1E-20 4.4E-25 152.9 15.4 304 4-372 136-469 (559)
184 PRK01742 tolB translocation pr 99.9 2.6E-19 5.6E-24 156.9 22.9 220 5-258 198-426 (429)
185 COG2319 FOG: WD40 repeat [Gene 99.9 4.3E-17 9.3E-22 144.6 37.5 288 4-370 149-443 (466)
186 KOG0642 Cell-cycle nuclear pro 99.9 3.1E-20 6.6E-25 154.6 15.7 261 44-376 284-568 (577)
187 KOG1240 Protein kinase contain 99.8 1.3E-18 2.8E-23 157.3 26.9 339 4-367 1042-1431(1431)
188 KOG0303 Actin-binding protein 99.8 1.7E-19 3.8E-24 143.8 18.9 208 48-279 75-297 (472)
189 KOG1587 Cytoplasmic dynein int 99.8 3.7E-19 8.1E-24 154.9 22.4 253 6-276 238-516 (555)
190 KOG1963 WD40 repeat protein [G 99.8 8.7E-18 1.9E-22 147.2 29.5 300 13-371 163-489 (792)
191 KOG1523 Actin-related protein 99.8 1.8E-18 3.9E-23 134.5 21.5 209 53-276 9-236 (361)
192 KOG1524 WD40 repeat-containing 99.8 1.9E-19 4.1E-24 149.1 16.8 208 23-274 76-283 (737)
193 PRK01742 tolB translocation pr 99.8 4.1E-18 8.9E-23 149.3 25.8 212 31-275 183-400 (429)
194 KOG1524 WD40 repeat-containing 99.8 6.7E-19 1.4E-23 146.0 19.3 227 7-266 11-245 (737)
195 KOG0649 WD40 repeat protein [G 99.8 9.5E-18 2.1E-22 125.6 21.6 235 11-276 11-274 (325)
196 KOG0771 Prolactin regulatory e 99.8 3.5E-19 7.5E-24 143.4 15.1 202 58-277 148-355 (398)
197 KOG1310 WD40 repeat protein [G 99.8 8.8E-19 1.9E-23 145.7 17.9 234 4-239 44-308 (758)
198 KOG1445 Tumor-specific antigen 99.8 5.2E-19 1.1E-23 149.6 14.6 217 9-246 626-856 (1012)
199 KOG1188 WD40 repeat protein [G 99.8 7.6E-19 1.7E-23 137.6 14.3 227 5-233 65-345 (376)
200 KOG4227 WD40 repeat protein [G 99.8 9.1E-18 2E-22 134.2 20.4 260 48-370 50-323 (609)
201 PRK03629 tolB translocation pr 99.8 4.7E-17 1E-21 142.3 26.2 220 5-257 193-427 (429)
202 KOG1517 Guanine nucleotide bin 99.8 4.6E-17 9.9E-22 145.4 25.1 297 11-372 1065-1384(1387)
203 KOG1334 WD40 repeat protein [G 99.8 1.6E-18 3.4E-23 142.1 14.1 279 45-377 133-432 (559)
204 KOG2394 WD40 protein DMR-N9 [G 99.8 2.3E-17 5E-22 136.9 21.0 222 13-257 126-384 (636)
205 KOG1587 Cytoplasmic dynein int 99.8 7.1E-17 1.5E-21 140.8 25.2 278 32-370 222-517 (555)
206 KOG4497 Uncharacterized conser 99.8 5.5E-18 1.2E-22 132.4 15.6 235 1-274 1-238 (447)
207 PRK03629 tolB translocation pr 99.8 4.3E-16 9.3E-21 136.3 28.4 206 33-269 180-396 (429)
208 KOG2139 WD40 repeat protein [G 99.8 2.3E-16 4.9E-21 125.0 22.8 233 10-270 98-368 (445)
209 KOG1272 WD40-repeat-containing 99.8 2.1E-18 4.6E-23 140.5 11.4 232 12-276 131-362 (545)
210 PRK02889 tolB translocation pr 99.8 3.3E-16 7.2E-21 137.2 26.1 205 32-265 176-388 (427)
211 KOG0649 WD40 repeat protein [G 99.8 3.4E-16 7.4E-21 117.4 21.6 200 56-279 12-238 (325)
212 PRK04922 tolB translocation pr 99.8 2.6E-16 5.6E-21 138.3 24.5 220 5-257 198-432 (433)
213 KOG2110 Uncharacterized conser 99.8 9E-16 2E-20 121.9 24.6 194 12-235 48-249 (391)
214 PRK05137 tolB translocation pr 99.8 4.9E-16 1.1E-20 136.8 25.9 219 5-257 196-432 (435)
215 KOG4497 Uncharacterized conser 99.8 1.3E-15 2.9E-20 119.3 24.7 256 10-277 48-392 (447)
216 PRK05137 tolB translocation pr 99.8 1.7E-15 3.6E-20 133.5 28.3 200 32-264 182-393 (435)
217 KOG1240 Protein kinase contain 99.8 1.2E-15 2.6E-20 138.5 26.9 222 37-279 1034-1276(1431)
218 KOG2321 WD40 repeat protein [G 99.8 1.1E-15 2.5E-20 128.1 24.4 283 7-370 48-344 (703)
219 PRK02889 tolB translocation pr 99.8 6E-16 1.3E-20 135.5 24.2 223 5-258 190-425 (427)
220 PRK04922 tolB translocation pr 99.8 9.9E-16 2.1E-20 134.7 25.5 201 32-265 184-396 (433)
221 KOG1310 WD40 repeat protein [G 99.7 2.5E-17 5.5E-22 137.2 13.6 225 45-279 41-306 (758)
222 KOG2111 Uncharacterized conser 99.7 2.2E-14 4.8E-19 111.9 28.5 179 32-236 75-258 (346)
223 KOG0644 Uncharacterized conser 99.7 3.5E-18 7.6E-23 148.8 8.4 250 47-377 183-434 (1113)
224 KOG1517 Guanine nucleotide bin 99.7 3.7E-16 7.9E-21 139.8 20.6 249 11-278 1110-1383(1387)
225 KOG2139 WD40 repeat protein [G 99.7 6E-16 1.3E-20 122.6 19.1 200 55-276 99-309 (445)
226 KOG1409 Uncharacterized conser 99.7 5.4E-15 1.2E-19 116.5 23.7 249 5-278 19-272 (404)
227 KOG2394 WD40 protein DMR-N9 [G 99.7 1.1E-16 2.4E-21 133.0 14.9 173 20-214 183-384 (636)
228 KOG2111 Uncharacterized conser 99.7 2.3E-14 4.9E-19 111.9 25.3 236 11-277 6-257 (346)
229 KOG0322 G-protein beta subunit 99.7 5.8E-16 1.3E-20 117.5 16.0 205 9-233 55-322 (323)
230 PF02239 Cytochrom_D1: Cytochr 99.7 1.3E-13 2.7E-18 117.3 31.9 190 23-237 6-205 (369)
231 PF10282 Lactonase: Lactonase, 99.7 1.7E-12 3.7E-17 110.6 38.5 262 10-285 36-332 (345)
232 PF02239 Cytochrom_D1: Cytochr 99.7 1.7E-13 3.6E-18 116.5 31.8 259 13-279 39-350 (369)
233 KOG1354 Serine/threonine prote 99.7 9.3E-15 2E-19 115.2 22.0 264 10-278 25-361 (433)
234 KOG1272 WD40-repeat-containing 99.7 3.7E-17 7.9E-22 133.4 8.6 236 10-277 170-409 (545)
235 PF08662 eIF2A: Eukaryotic tra 99.7 3.7E-15 8.1E-20 115.1 19.1 150 58-235 9-180 (194)
236 PF08662 eIF2A: Eukaryotic tra 99.7 7.5E-15 1.6E-19 113.4 20.6 148 14-173 9-178 (194)
237 KOG3881 Uncharacterized conser 99.7 2.6E-15 5.6E-20 120.2 18.3 250 10-279 55-323 (412)
238 PF10282 Lactonase: Lactonase, 99.7 7.8E-12 1.7E-16 106.6 40.7 280 25-369 2-322 (345)
239 PRK00178 tolB translocation pr 99.7 4.1E-14 9E-19 124.9 26.1 220 5-257 193-427 (430)
240 COG2706 3-carboxymuconate cycl 99.7 1.5E-12 3.2E-17 104.1 31.7 262 3-277 32-322 (346)
241 PRK01029 tolB translocation pr 99.7 5.7E-14 1.2E-18 122.5 25.9 227 6-258 180-425 (428)
242 TIGR02800 propeller_TolB tol-p 99.7 3.9E-14 8.5E-19 124.9 24.7 218 5-255 184-416 (417)
243 TIGR02800 propeller_TolB tol-p 99.7 1.8E-13 3.8E-18 120.8 28.5 199 33-264 171-381 (417)
244 PRK04792 tolB translocation pr 99.7 5.8E-14 1.3E-18 123.5 24.7 219 6-257 213-446 (448)
245 KOG3881 Uncharacterized conser 99.7 1.9E-14 4.2E-19 115.2 19.5 250 54-376 55-327 (412)
246 PRK04792 tolB translocation pr 99.7 2.8E-13 6E-18 119.2 26.8 198 33-263 199-408 (448)
247 PRK00178 tolB translocation pr 99.6 5.1E-13 1.1E-17 118.0 27.8 211 33-276 180-404 (430)
248 KOG2041 WD40 repeat protein [G 99.6 2.1E-13 4.5E-18 117.9 23.6 267 10-285 14-346 (1189)
249 PRK01029 tolB translocation pr 99.6 1.1E-12 2.4E-17 114.5 28.2 223 32-278 165-405 (428)
250 COG2706 3-carboxymuconate cycl 99.6 3.1E-11 6.7E-16 96.7 32.9 236 31-284 15-283 (346)
251 KOG0280 Uncharacterized conser 99.6 2E-12 4.3E-17 100.1 22.8 243 12-276 16-284 (339)
252 KOG0309 Conserved WD40 repeat- 99.6 2.6E-14 5.7E-19 123.6 13.2 303 9-370 23-340 (1081)
253 KOG0974 WD-repeat protein WDR6 99.6 1.1E-13 2.3E-18 124.1 16.9 274 9-370 6-289 (967)
254 KOG4547 WD40 repeat-containing 99.6 3.1E-12 6.7E-17 108.3 23.9 193 19-235 2-221 (541)
255 KOG0974 WD-repeat protein WDR6 99.5 3.6E-13 7.7E-18 120.9 17.2 198 10-235 87-289 (967)
256 KOG4547 WD40 repeat-containing 99.5 7.4E-12 1.6E-16 106.0 24.0 190 64-277 3-221 (541)
257 KOG1354 Serine/threonine prote 99.5 8.6E-13 1.9E-17 104.3 17.1 246 10-274 84-432 (433)
258 KOG1409 Uncharacterized conser 99.5 1.2E-12 2.5E-17 103.6 15.5 254 44-370 14-271 (404)
259 KOG2315 Predicted translation 99.5 6.3E-11 1.4E-15 99.9 25.9 285 10-378 34-353 (566)
260 COG5170 CDC55 Serine/threonine 99.5 1.6E-12 3.4E-17 101.6 15.1 264 10-278 26-369 (460)
261 TIGR02658 TTQ_MADH_Hv methylam 99.5 1.5E-09 3.2E-14 90.5 33.4 265 32-377 27-338 (352)
262 KOG1064 RAVE (regulator of V-A 99.5 5.8E-13 1.3E-17 125.7 14.2 200 6-244 2204-2407(2439)
263 KOG0280 Uncharacterized conser 99.5 1.5E-11 3.3E-16 95.3 19.3 238 11-271 70-327 (339)
264 COG4946 Uncharacterized protei 99.5 1E-10 2.3E-15 96.8 24.6 215 18-263 274-504 (668)
265 KOG4532 WD40-like repeat conta 99.4 1.4E-10 2.9E-15 89.1 21.7 237 14-267 71-322 (344)
266 PF04762 IKI3: IKI3 family; I 99.4 1.4E-09 3E-14 102.9 32.9 253 11-286 22-342 (928)
267 KOG2315 Predicted translation 99.4 1E-10 2.2E-15 98.6 22.4 232 14-278 129-392 (566)
268 PRK04043 tolB translocation pr 99.4 1.4E-09 3E-14 94.6 30.0 212 32-279 169-401 (419)
269 PRK04043 tolB translocation pr 99.4 3.2E-10 6.9E-15 98.5 26.0 209 11-254 188-418 (419)
270 KOG2321 WD40 repeat protein [G 99.4 1.7E-11 3.6E-16 103.6 17.0 189 21-235 145-344 (703)
271 PF04762 IKI3: IKI3 family; I 99.4 1.5E-09 3.2E-14 102.8 31.9 315 10-370 75-457 (928)
272 COG4946 Uncharacterized protei 99.4 8.5E-10 1.8E-14 91.5 25.9 147 7-163 356-507 (668)
273 KOG2314 Translation initiation 99.4 1.9E-10 4E-15 97.0 22.4 242 14-284 214-487 (698)
274 TIGR02658 TTQ_MADH_Hv methylam 99.4 5.9E-09 1.3E-13 87.0 30.0 239 18-279 53-333 (352)
275 KOG1912 WD40 repeat protein [G 99.3 6.2E-09 1.3E-13 91.6 27.9 245 11-277 16-305 (1062)
276 KOG1064 RAVE (regulator of V-A 99.3 1.3E-11 2.9E-16 116.9 12.1 192 52-279 2206-2401(2439)
277 COG5354 Uncharacterized protei 99.3 1.1E-09 2.3E-14 91.6 21.5 240 10-278 32-308 (561)
278 PLN02919 haloacid dehalogenase 99.3 1.6E-08 3.5E-13 97.7 32.0 252 14-280 571-892 (1057)
279 PF08450 SGL: SMP-30/Gluconola 99.3 6.6E-08 1.4E-12 78.7 31.3 223 14-262 3-240 (246)
280 KOG0882 Cyclophilin-related pe 99.3 1.7E-10 3.6E-15 94.9 15.6 272 7-286 6-315 (558)
281 PLN02919 haloacid dehalogenase 99.3 1.6E-08 3.4E-13 97.8 30.4 269 58-373 571-892 (1057)
282 KOG2041 WD40 repeat protein [G 99.3 2E-09 4.3E-14 93.9 21.8 191 4-221 65-325 (1189)
283 KOG4190 Uncharacterized conser 99.3 6.5E-11 1.4E-15 100.0 11.7 211 5-236 730-950 (1034)
284 KOG2314 Translation initiation 99.3 5.3E-09 1.1E-13 88.5 22.3 237 11-276 250-525 (698)
285 KOG3914 WD repeat protein WDR4 99.2 2.7E-10 5.9E-15 92.3 14.0 162 57-239 65-228 (390)
286 COG5354 Uncharacterized protei 99.2 2.3E-08 5.1E-13 83.8 25.3 235 10-276 71-348 (561)
287 KOG3914 WD repeat protein WDR4 99.2 8.4E-10 1.8E-14 89.6 16.2 154 12-173 64-222 (390)
288 KOG4532 WD40-like repeat conta 99.2 1.5E-08 3.4E-13 78.0 21.6 227 30-285 50-291 (344)
289 PF15492 Nbas_N: Neuroblastoma 99.2 1.1E-07 2.4E-12 74.4 26.4 220 16-237 3-262 (282)
290 KOG4714 Nucleoporin [Nuclear s 99.2 1.1E-09 2.5E-14 83.7 13.6 200 13-235 39-255 (319)
291 PF07433 DUF1513: Protein of u 99.2 4.8E-07 1E-11 73.1 28.8 232 12-270 6-279 (305)
292 KOG0309 Conserved WD40 repeat- 99.1 3.2E-10 6.9E-15 99.0 10.3 206 54-278 24-234 (1081)
293 KOG2066 Vacuolar assembly/sort 99.1 6E-09 1.3E-13 92.1 17.8 185 10-235 39-234 (846)
294 TIGR03300 assembly_YfgL outer 99.1 1.4E-07 3.1E-12 82.1 25.9 270 21-377 64-346 (377)
295 KOG1912 WD40 repeat protein [G 99.1 5.9E-08 1.3E-12 85.7 22.3 106 6-115 51-173 (1062)
296 KOG4714 Nucleoporin [Nuclear s 99.1 1E-09 2.3E-14 83.9 10.1 204 19-232 98-316 (319)
297 PF15492 Nbas_N: Neuroblastoma 99.1 6.1E-07 1.3E-11 70.4 24.5 236 103-377 2-267 (282)
298 KOG2114 Vacuolar assembly/sort 99.0 1.9E-07 4.1E-12 83.5 23.4 202 17-239 30-248 (933)
299 PF08450 SGL: SMP-30/Gluconola 99.0 3.8E-06 8.1E-11 68.4 29.4 185 13-222 42-243 (246)
300 KOG2695 WD40 repeat protein [G 99.0 2.7E-09 5.9E-14 85.0 9.8 161 70-256 228-401 (425)
301 TIGR03300 assembly_YfgL outer 99.0 1.8E-06 3.8E-11 75.3 28.3 227 21-278 104-340 (377)
302 KOG4190 Uncharacterized conser 99.0 1.6E-09 3.4E-14 91.8 7.6 205 46-274 727-946 (1034)
303 KOG1832 HIV-1 Vpr-binding prot 99.0 4.1E-10 8.9E-15 100.3 4.2 218 5-263 1096-1317(1516)
304 COG5170 CDC55 Serine/threonine 99.0 3.4E-08 7.3E-13 77.9 13.9 209 54-278 26-311 (460)
305 PF00400 WD40: WD domain, G-be 99.0 4.8E-09 1E-13 58.0 6.8 38 45-82 2-39 (39)
306 PF07433 DUF1513: Protein of u 99.0 4.9E-07 1.1E-11 73.1 20.5 189 16-230 56-281 (305)
307 KOG1645 RING-finger-containing 98.9 1.3E-07 2.9E-12 77.1 16.2 245 6-275 189-460 (463)
308 KOG0882 Cyclophilin-related pe 98.9 4.7E-08 1E-12 80.8 13.6 287 53-378 8-314 (558)
309 PF11768 DUF3312: Protein of u 98.9 4E-06 8.6E-11 72.6 25.5 118 98-236 205-331 (545)
310 PF08596 Lgl_C: Lethal giant l 98.9 1.6E-05 3.4E-10 68.5 29.2 245 12-277 3-336 (395)
311 PF00400 WD40: WD domain, G-be 98.9 8.5E-09 1.8E-13 57.0 6.1 38 195-232 2-39 (39)
312 KOG1920 IkappaB kinase complex 98.9 1.5E-06 3.2E-11 81.0 23.6 203 11-236 69-324 (1265)
313 PF13360 PQQ_2: PQQ-like domai 98.9 7.5E-06 1.6E-10 66.4 25.1 217 31-278 2-232 (238)
314 PF00930 DPPIV_N: Dipeptidyl p 98.9 3E-06 6.4E-11 72.9 23.5 233 10-263 42-343 (353)
315 PF11768 DUF3312: Protein of u 98.8 1.3E-06 2.9E-11 75.5 20.4 136 34-176 186-331 (545)
316 KOG1920 IkappaB kinase complex 98.8 1.2E-05 2.5E-10 75.3 27.4 209 54-286 68-331 (1265)
317 KOG1275 PAB-dependent poly(A) 98.8 2E-07 4.4E-12 83.9 15.6 185 21-232 146-340 (1118)
318 KOG2066 Vacuolar assembly/sort 98.8 2E-07 4.4E-12 82.7 15.0 182 55-276 40-233 (846)
319 KOG1275 PAB-dependent poly(A) 98.8 3.2E-07 6.9E-12 82.7 16.0 187 67-282 148-348 (1118)
320 COG0823 TolB Periplasmic compo 98.8 1.3E-06 2.8E-11 75.8 18.9 186 10-225 192-390 (425)
321 COG0823 TolB Periplasmic compo 98.8 2E-06 4.4E-11 74.6 19.7 208 48-282 186-406 (425)
322 PRK11138 outer membrane biogen 98.7 2.6E-05 5.7E-10 68.3 25.6 225 21-278 68-314 (394)
323 KOG3621 WD40 repeat-containing 98.7 6.4E-06 1.4E-10 72.6 20.9 147 12-161 35-186 (726)
324 KOG2114 Vacuolar assembly/sort 98.7 3.3E-06 7.1E-11 75.9 19.3 201 62-279 31-246 (933)
325 PF06977 SdiA-regulated: SdiA- 98.7 4.3E-05 9.3E-10 61.1 23.8 202 6-231 17-247 (248)
326 PRK11138 outer membrane biogen 98.7 4.3E-05 9.2E-10 67.0 26.2 228 22-278 120-355 (394)
327 KOG1008 Uncharacterized conser 98.7 5.1E-09 1.1E-13 90.3 1.2 203 11-235 57-276 (783)
328 KOG2695 WD40 repeat protein [G 98.7 1.7E-07 3.7E-12 75.1 9.3 141 26-173 228-375 (425)
329 KOG3617 WD40 and TPR repeat-co 98.6 1.3E-06 2.8E-11 78.5 14.5 113 13-131 18-134 (1416)
330 PF06977 SdiA-regulated: SdiA- 98.6 4.9E-05 1.1E-09 60.7 21.7 207 48-273 15-247 (248)
331 PF04841 Vps16_N: Vps16, N-ter 98.6 8.2E-05 1.8E-09 65.0 25.0 224 16-274 34-285 (410)
332 KOG1008 Uncharacterized conser 98.6 1.6E-08 3.5E-13 87.3 1.9 202 54-275 56-274 (783)
333 PF00930 DPPIV_N: Dipeptidyl p 98.6 0.00035 7.5E-09 60.2 27.4 95 19-118 1-120 (353)
334 KOG3617 WD40 and TPR repeat-co 98.6 1.2E-06 2.7E-11 78.5 12.3 72 12-85 61-132 (1416)
335 PF13360 PQQ_2: PQQ-like domai 98.6 5.5E-05 1.2E-09 61.3 21.5 191 21-239 35-235 (238)
336 KOG3621 WD40 repeat-containing 98.5 2.8E-05 6.1E-10 68.7 19.6 118 55-173 34-153 (726)
337 PF04053 Coatomer_WDAD: Coatom 98.5 8.2E-05 1.8E-09 65.1 22.4 229 9-275 31-261 (443)
338 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.00027 5.8E-09 55.1 24.2 98 22-124 63-161 (354)
339 PRK02888 nitrous-oxide reducta 98.5 0.00028 6.1E-09 63.1 25.0 169 76-277 215-405 (635)
340 PF06433 Me-amine-dh_H: Methyl 98.5 0.0005 1.1E-08 56.8 29.8 177 32-237 17-216 (342)
341 KOG1645 RING-finger-containing 98.5 1.3E-05 2.8E-10 66.0 14.9 74 95-173 190-265 (463)
342 cd00216 PQQ_DH Dehydrogenases 98.4 0.0005 1.1E-08 61.9 26.1 109 22-133 61-188 (488)
343 PF04053 Coatomer_WDAD: Coatom 98.4 0.00022 4.9E-09 62.4 22.4 178 53-272 31-219 (443)
344 KOG4649 PQQ (pyrrolo-quinoline 98.4 0.00049 1.1E-08 53.8 21.3 141 67-234 24-165 (354)
345 PRK02888 nitrous-oxide reducta 98.3 0.0002 4.4E-09 63.9 20.3 198 18-235 200-405 (635)
346 PF14870 PSII_BNR: Photosynthe 98.3 0.0014 3E-08 54.2 30.4 244 9-283 15-267 (302)
347 KOG1832 HIV-1 Vpr-binding prot 98.2 1.3E-06 2.9E-11 78.8 5.0 188 44-265 1091-1284(1516)
348 COG3391 Uncharacterized conser 98.2 0.0035 7.5E-08 54.6 24.8 220 13-258 76-309 (381)
349 PF14583 Pectate_lyase22: Olig 98.2 0.0029 6.3E-08 53.4 28.4 218 17-264 42-299 (386)
350 PRK13616 lipoprotein LpqB; Pro 98.1 0.00079 1.7E-08 61.4 20.2 151 11-173 350-524 (591)
351 PF03178 CPSF_A: CPSF A subuni 98.1 0.0043 9.4E-08 52.8 28.0 144 22-173 42-201 (321)
352 PF08553 VID27: VID27 cytoplas 98.1 0.00042 9E-09 64.3 18.1 133 118-275 502-646 (794)
353 KOG4640 Anaphase-promoting com 98.1 2.6E-05 5.6E-10 68.1 9.6 95 10-108 20-115 (665)
354 COG3204 Uncharacterized protei 98.1 0.0037 8E-08 50.1 21.5 178 50-236 81-265 (316)
355 KOG4640 Anaphase-promoting com 98.0 4E-05 8.7E-10 66.9 9.5 95 144-257 20-115 (665)
356 PF03178 CPSF_A: CPSF A subuni 98.0 0.0066 1.4E-07 51.7 25.2 216 33-273 3-262 (321)
357 PF14870 PSII_BNR: Photosynthe 98.0 0.0073 1.6E-07 50.0 26.2 232 12-273 63-301 (302)
358 PF08596 Lgl_C: Lethal giant l 97.9 0.0046 1E-07 53.6 20.5 192 9-223 85-325 (395)
359 COG3386 Gluconolactonase [Carb 97.9 0.0088 1.9E-07 49.9 23.4 195 59-276 29-243 (307)
360 PF14783 BBS2_Mid: Ciliary BBS 97.9 0.0025 5.5E-08 43.3 14.1 100 13-123 2-109 (111)
361 PF00780 CNH: CNH domain; Int 97.9 0.01 2.2E-07 49.3 24.5 150 64-237 5-168 (275)
362 COG3386 Gluconolactonase [Carb 97.9 0.011 2.4E-07 49.3 25.5 224 16-262 30-270 (307)
363 COG3204 Uncharacterized protei 97.9 0.009 2E-07 48.0 20.6 164 6-173 81-262 (316)
364 PRK13616 lipoprotein LpqB; Pro 97.9 0.0023 5.1E-08 58.5 18.2 163 99-277 350-526 (591)
365 PF08553 VID27: VID27 cytoplas 97.9 0.0051 1.1E-07 57.4 20.3 135 30-174 502-647 (794)
366 PF00780 CNH: CNH domain; Int 97.9 0.012 2.5E-07 48.9 28.5 243 20-284 5-263 (275)
367 smart00320 WD40 WD40 repeats. 97.8 7.6E-05 1.6E-09 40.3 5.7 38 45-82 3-40 (40)
368 PF02897 Peptidase_S9_N: Proly 97.8 0.019 4E-07 51.0 30.1 227 12-262 125-385 (414)
369 PF14783 BBS2_Mid: Ciliary BBS 97.8 0.0033 7.2E-08 42.7 13.8 98 147-270 2-108 (111)
370 PF06433 Me-amine-dh_H: Methyl 97.8 0.015 3.1E-07 48.4 26.8 248 15-282 40-326 (342)
371 smart00320 WD40 WD40 repeats. 97.8 0.00011 2.4E-09 39.6 5.6 38 195-232 3-40 (40)
372 PHA02713 hypothetical protein; 97.8 0.0017 3.8E-08 59.4 15.9 192 21-237 303-536 (557)
373 COG3490 Uncharacterized protei 97.8 0.013 2.9E-07 46.8 20.3 238 15-274 72-346 (366)
374 PF10647 Gmad1: Lipoprotein Lp 97.7 0.016 3.5E-07 47.2 22.1 150 12-166 25-187 (253)
375 COG3490 Uncharacterized protei 97.7 0.002 4.4E-08 51.2 13.6 190 17-232 120-346 (366)
376 KOG4441 Proteins containing BT 97.7 0.0055 1.2E-07 56.1 18.2 191 21-237 284-502 (571)
377 COG3391 Uncharacterized conser 97.6 0.035 7.6E-07 48.4 28.5 237 12-278 32-285 (381)
378 cd00216 PQQ_DH Dehydrogenases 97.6 0.04 8.6E-07 49.9 22.6 53 215-269 405-459 (488)
379 PF10647 Gmad1: Lipoprotein Lp 97.6 0.026 5.7E-07 46.0 24.6 155 56-226 25-187 (253)
380 PF04841 Vps16_N: Vps16, N-ter 97.6 0.043 9.3E-07 48.3 23.9 30 144-173 216-245 (410)
381 PRK13684 Ycf48-like protein; P 97.6 0.037 7.9E-07 47.3 29.4 241 10-284 45-295 (334)
382 PF05694 SBP56: 56kDa selenium 97.6 0.04 8.6E-07 47.4 24.2 203 21-239 86-347 (461)
383 PF12894 Apc4_WD40: Anaphase-p 97.5 0.00039 8.5E-09 39.3 5.3 34 7-40 8-41 (47)
384 PF14583 Pectate_lyase22: Olig 97.5 0.051 1.1E-06 46.2 25.6 233 13-274 83-379 (386)
385 PHA02713 hypothetical protein; 97.5 0.019 4.1E-07 52.8 18.2 125 33-165 273-408 (557)
386 KOG4441 Proteins containing BT 97.4 0.014 3.1E-07 53.4 16.3 145 21-173 332-498 (571)
387 KOG2079 Vacuolar assembly/sort 97.4 0.0084 1.8E-07 56.5 14.6 105 21-128 98-203 (1206)
388 KOG2444 WD40 repeat protein [G 97.4 0.00027 5.8E-09 54.1 4.2 140 71-235 35-178 (238)
389 KOG2395 Protein involved in va 97.3 0.0084 1.8E-07 52.0 13.2 140 114-276 350-500 (644)
390 PF15390 DUF4613: Domain of un 97.3 0.014 3E-07 51.5 14.5 154 6-172 15-184 (671)
391 KOG2079 Vacuolar assembly/sort 97.3 0.02 4.4E-07 54.1 15.8 101 66-173 99-202 (1206)
392 PHA03098 kelch-like protein; P 97.3 0.028 6.2E-07 51.7 17.1 145 21-173 294-463 (534)
393 KOG2395 Protein involved in va 97.2 0.011 2.3E-07 51.4 12.7 142 66-233 345-499 (644)
394 PF05694 SBP56: 56kDa selenium 97.2 0.13 2.8E-06 44.4 22.7 156 17-174 136-342 (461)
395 TIGR02604 Piru_Ver_Nterm putat 97.1 0.062 1.3E-06 46.7 17.0 146 11-163 14-202 (367)
396 PF12234 Rav1p_C: RAVE protein 97.0 0.029 6.2E-07 51.2 14.2 113 12-127 31-155 (631)
397 PF12234 Rav1p_C: RAVE protein 97.0 0.088 1.9E-06 48.2 17.0 121 99-233 30-155 (631)
398 PHA02790 Kelch-like protein; P 97.0 0.1 2.2E-06 47.2 17.4 142 21-173 271-422 (480)
399 TIGR02604 Piru_Ver_Nterm putat 96.9 0.098 2.1E-06 45.5 16.3 106 56-163 15-142 (367)
400 PF07995 GSDH: Glucose / Sorbo 96.9 0.22 4.8E-06 42.5 27.6 254 12-270 3-329 (331)
401 PF15390 DUF4613: Domain of un 96.9 0.085 1.8E-06 46.9 15.2 151 99-274 20-184 (671)
402 PRK13684 Ycf48-like protein; P 96.9 0.25 5.3E-06 42.3 24.3 150 98-274 172-329 (334)
403 PF12894 Apc4_WD40: Anaphase-p 96.8 0.0068 1.5E-07 34.3 5.6 31 54-84 11-41 (47)
404 PLN00033 photosystem II stabil 96.8 0.33 7.1E-06 42.4 31.7 78 204-284 280-363 (398)
405 KOG2280 Vacuolar assembly/sort 96.7 0.27 5.8E-06 45.2 17.2 199 33-259 65-271 (829)
406 KOG2444 WD40 repeat protein [G 96.7 0.0083 1.8E-07 46.3 7.0 104 66-173 70-176 (238)
407 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.6 0.54 1.2E-05 43.1 26.8 209 22-238 69-337 (527)
408 KOG1897 Damage-specific DNA bi 96.6 0.7 1.5E-05 44.0 31.5 120 11-131 488-616 (1096)
409 KOG1897 Damage-specific DNA bi 96.5 0.77 1.7E-05 43.7 28.2 227 25-277 687-943 (1096)
410 KOG3630 Nuclear pore complex, 96.5 0.15 3.3E-06 49.0 15.0 145 99-263 101-259 (1405)
411 KOG4499 Ca2+-binding protein R 96.5 0.3 6.4E-06 38.3 17.3 214 23-257 28-263 (310)
412 PF08728 CRT10: CRT10; InterP 96.4 0.4 8.7E-06 44.6 17.0 148 22-173 49-245 (717)
413 PF14655 RAB3GAP2_N: Rab3 GTPa 96.4 0.58 1.3E-05 40.9 26.3 39 199-237 302-340 (415)
414 PRK10115 protease 2; Provision 96.2 1.1 2.5E-05 42.5 28.7 113 12-128 128-255 (686)
415 COG5276 Uncharacterized conser 96.2 0.51 1.1E-05 38.4 27.8 157 56-237 88-244 (370)
416 PLN00033 photosystem II stabil 96.1 0.83 1.8E-05 39.9 25.8 146 101-273 241-396 (398)
417 KOG2377 Uncharacterized conser 96.1 0.17 3.8E-06 43.5 11.8 143 59-222 27-171 (657)
418 KOG3630 Nuclear pore complex, 96.1 0.054 1.2E-06 51.8 9.6 148 11-161 101-260 (1405)
419 TIGR03074 PQQ_membr_DH membran 96.0 1.6 3.5E-05 41.8 22.1 107 22-133 194-349 (764)
420 PF10313 DUF2415: Uncharacteri 95.9 0.069 1.5E-06 29.3 5.8 32 205-236 1-35 (43)
421 PF14727 PHTB1_N: PTHB1 N-term 95.9 1.1 2.5E-05 39.2 28.3 146 22-173 37-203 (418)
422 PF02897 Peptidase_S9_N: Proly 95.7 1.4 3E-05 39.2 32.3 112 57-173 126-259 (414)
423 PLN02153 epithiospecifier prot 95.6 1.3 2.9E-05 38.1 16.7 69 21-90 85-173 (341)
424 PHA03098 kelch-like protein; P 95.6 0.56 1.2E-05 43.3 14.5 145 21-173 342-510 (534)
425 PF10313 DUF2415: Uncharacteri 95.6 0.061 1.3E-06 29.5 4.8 32 11-42 1-35 (43)
426 TIGR03118 PEPCTERM_chp_1 conse 95.6 1.1 2.4E-05 36.9 22.1 207 12-238 24-283 (336)
427 TIGR03606 non_repeat_PQQ dehyd 95.5 1.7 3.7E-05 38.7 19.4 110 10-119 29-166 (454)
428 PRK14131 N-acetylneuraminic ac 95.5 1.6 3.4E-05 38.3 16.1 55 21-75 84-149 (376)
429 COG5276 Uncharacterized conser 95.4 1.2 2.6E-05 36.4 20.5 157 97-277 85-242 (370)
430 KOG1916 Nuclear protein, conta 95.3 0.024 5.3E-07 52.6 4.5 119 51-176 129-267 (1283)
431 TIGR03547 muta_rot_YjhT mutatr 95.3 1.8 3.8E-05 37.4 16.7 96 21-118 63-209 (346)
432 PHA02790 Kelch-like protein; P 95.2 0.8 1.7E-05 41.5 13.6 142 21-173 318-469 (480)
433 PLN02193 nitrile-specifier pro 95.2 2.4 5.2E-05 38.4 16.7 148 22-173 176-350 (470)
434 PLN02153 epithiospecifier prot 95.0 2 4.4E-05 36.9 17.2 68 21-90 32-115 (341)
435 PF07569 Hira: TUP1-like enhan 94.9 0.18 3.8E-06 40.0 7.8 73 212-285 18-103 (219)
436 KOG2377 Uncharacterized conser 94.8 2.5 5.4E-05 36.9 17.4 105 141-263 63-169 (657)
437 PF03022 MRJP: Major royal jel 94.7 2.1 4.7E-05 35.7 16.6 183 77-264 35-252 (287)
438 COG4590 ABC-type uncharacteriz 94.6 0.31 6.7E-06 42.1 8.7 164 98-278 220-388 (733)
439 PF14761 HPS3_N: Hermansky-Pud 94.5 1.8 3.8E-05 33.8 14.3 115 12-130 19-165 (215)
440 PF08728 CRT10: CRT10; InterP 94.5 4.3 9.3E-05 38.2 16.4 152 66-233 49-245 (717)
441 PF05096 Glu_cyclase_2: Glutam 94.5 2.2 4.7E-05 34.7 22.7 184 11-223 45-249 (264)
442 KOG4499 Ca2+-binding protein R 94.5 1.9 4.1E-05 34.0 13.6 94 57-154 160-263 (310)
443 PF10168 Nup88: Nuclear pore c 94.4 4.9 0.00011 38.3 17.2 93 145-243 85-188 (717)
444 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.2 4.5 9.7E-05 37.2 26.2 147 23-175 121-334 (527)
445 PLN02193 nitrile-specifier pro 94.1 4.3 9.4E-05 36.8 16.3 140 21-165 228-387 (470)
446 PRK10115 protease 2; Provision 94.1 5.7 0.00012 37.9 24.9 112 56-173 128-254 (686)
447 COG5167 VID27 Protein involved 93.9 2.2 4.8E-05 37.8 12.4 61 215-276 572-632 (776)
448 PF14781 BBS2_N: Ciliary BBSom 93.8 1.7 3.7E-05 31.0 11.7 113 14-131 2-128 (136)
449 COG4590 ABC-type uncharacteriz 93.7 0.63 1.4E-05 40.3 8.8 162 54-237 220-389 (733)
450 PF07995 GSDH: Glucose / Sorbo 93.6 4.2 9.2E-05 34.8 14.8 108 57-166 4-135 (331)
451 COG4257 Vgb Streptogramin lyas 93.6 3.3 7.3E-05 33.6 21.8 228 11-263 62-291 (353)
452 PF13449 Phytase-like: Esteras 93.6 4.2 9.2E-05 34.7 24.4 163 10-173 19-248 (326)
453 PF07569 Hira: TUP1-like enhan 93.5 0.95 2.1E-05 36.0 9.2 79 11-92 13-103 (219)
454 PF14655 RAB3GAP2_N: Rab3 GTPa 93.4 1.2 2.7E-05 39.0 10.5 82 7-92 304-406 (415)
455 COG5167 VID27 Protein involved 93.4 3.5 7.7E-05 36.6 12.8 145 65-234 478-632 (776)
456 TIGR03548 mutarot_permut cycli 93.2 2.3 5E-05 36.3 11.9 69 21-90 123-200 (323)
457 KOG1916 Nuclear protein, conta 93.0 0.15 3.2E-06 47.8 4.5 120 141-275 129-264 (1283)
458 KOG1900 Nuclear pore complex, 93.0 2.8 6.1E-05 41.6 12.8 169 58-236 82-274 (1311)
459 PF13449 Phytase-like: Esteras 92.9 5.5 0.00012 34.1 17.4 162 99-264 20-231 (326)
460 PF12657 TFIIIC_delta: Transcr 92.8 1.6 3.6E-05 33.2 9.3 30 56-85 87-122 (173)
461 TIGR03606 non_repeat_PQQ dehyd 92.7 7.1 0.00015 34.9 15.6 56 55-110 30-90 (454)
462 PF14727 PHTB1_N: PTHB1 N-term 92.7 6.8 0.00015 34.6 29.7 147 66-233 37-203 (418)
463 COG4257 Vgb Streptogramin lyas 92.6 4.8 0.0001 32.7 17.2 205 57-289 64-274 (353)
464 KOG2247 WD40 repeat-containing 92.5 0.014 3.1E-07 50.3 -2.3 145 58-229 38-183 (615)
465 TIGR03548 mutarot_permut cycli 92.4 6.3 0.00014 33.6 20.2 105 65-173 72-193 (323)
466 KOG1900 Nuclear pore complex, 92.3 3 6.5E-05 41.4 12.1 162 163-370 96-273 (1311)
467 PF11715 Nup160: Nucleoporin N 92.2 1.2 2.6E-05 41.2 9.5 73 20-93 156-257 (547)
468 KOG2247 WD40 repeat-containing 92.1 0.021 4.6E-07 49.3 -1.8 136 15-160 39-175 (615)
469 PF08801 Nucleoporin_N: Nup133 92.1 8.4 0.00018 34.4 15.8 31 335-370 190-220 (422)
470 PF10168 Nup88: Nuclear pore c 91.9 12 0.00027 35.8 26.0 75 98-173 84-178 (717)
471 PF07250 Glyoxal_oxid_N: Glyox 91.8 5.1 0.00011 32.4 11.2 143 78-237 48-200 (243)
472 PF07676 PD40: WD40-like Beta 91.5 1.1 2.4E-05 24.0 5.2 28 204-231 8-38 (39)
473 KOG1983 Tomosyn and related SN 91.4 5.9 0.00013 39.5 13.3 34 8-41 33-66 (993)
474 PF07676 PD40: WD40-like Beta 91.2 0.85 1.8E-05 24.4 4.6 32 6-37 4-38 (39)
475 KOG4460 Nuclear pore complex, 91.0 5.7 0.00012 35.5 11.3 26 100-125 105-130 (741)
476 KOG4460 Nuclear pore complex, 90.5 12 0.00025 33.7 12.7 76 56-131 105-201 (741)
477 PF05096 Glu_cyclase_2: Glutam 90.5 8.4 0.00018 31.4 22.7 153 99-278 45-205 (264)
478 PF10214 Rrn6: RNA polymerase 90.2 19 0.00042 35.0 17.8 160 10-171 145-326 (765)
479 PF14761 HPS3_N: Hermansky-Pud 90.0 7.9 0.00017 30.4 15.1 51 67-118 29-79 (215)
480 TIGR03118 PEPCTERM_chp_1 conse 89.4 11 0.00024 31.3 20.8 218 57-278 25-281 (336)
481 PRK13615 lipoprotein LpqB; Pro 89.1 18 0.0004 33.4 23.9 162 58-237 337-505 (557)
482 KOG1983 Tomosyn and related SN 88.9 26 0.00057 35.2 15.4 32 56-87 37-68 (993)
483 COG5290 IkappaB kinase complex 88.6 14 0.0003 35.1 12.2 30 10-39 112-141 (1243)
484 PF12657 TFIIIC_delta: Transcr 88.3 9.6 0.00021 29.0 10.1 35 335-370 86-122 (173)
485 PF03088 Str_synth: Strictosid 88.0 5.8 0.00012 26.2 8.7 48 224-273 35-82 (89)
486 PF12768 Rax2: Cortical protei 87.8 15 0.00032 30.6 12.6 96 31-128 15-121 (281)
487 PF07250 Glyoxal_oxid_N: Glyox 87.5 14 0.0003 30.0 12.3 136 34-173 48-196 (243)
488 PF11715 Nup160: Nucleoporin N 87.5 5.3 0.00011 37.1 9.6 66 108-174 156-248 (547)
489 TIGR03547 muta_rot_YjhT mutatr 86.9 19 0.00042 31.0 21.3 97 21-119 17-128 (346)
490 KOG2280 Vacuolar assembly/sort 86.5 30 0.00064 32.8 18.1 154 12-173 85-245 (829)
491 TIGR03032 conserved hypothetic 86.4 18 0.00039 30.4 10.7 84 21-109 212-315 (335)
492 PF14781 BBS2_N: Ciliary BBSom 86.3 10 0.00022 27.2 12.5 106 60-172 4-123 (136)
493 PF12768 Rax2: Cortical protei 85.7 19 0.00042 29.9 11.7 91 76-172 16-121 (281)
494 PF12341 DUF3639: Protein of u 84.4 3.4 7.3E-05 20.1 3.6 26 11-38 2-27 (27)
495 TIGR02171 Fb_sc_TIGR02171 Fibr 83.8 12 0.00025 36.3 9.7 87 113-220 321-414 (912)
496 PRK13615 lipoprotein LpqB; Pro 83.7 37 0.00081 31.5 21.2 154 14-173 337-501 (557)
497 PF08801 Nucleoporin_N: Nup133 83.4 33 0.00071 30.7 15.2 30 145-174 190-219 (422)
498 PF01436 NHL: NHL repeat; Int 83.2 4 8.7E-05 19.9 4.1 26 12-37 3-28 (28)
499 TIGR02276 beta_rpt_yvtn 40-res 82.8 5.6 0.00012 21.4 6.0 31 20-52 1-32 (42)
500 KOG1896 mRNA cleavage and poly 82.5 58 0.0013 32.9 19.4 179 77-278 1005-1215(1366)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.2e-54 Score=338.03 Aligned_cols=297 Identities=15% Similarity=0.250 Sum_probs=261.9
Q ss_pred cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982 4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ 83 (379)
Q Consensus 4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~ 83 (379)
..+-+|.++|.|++|+|+|..||+|+.|.++++||+.+. .+..+.++|...|.|++|+|||+.||+|+.||+|++||.
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te--Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE--TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC--CcceeecCCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence 456799999999999999999999999999999999998 789999999999999999999999999999999999999
Q ss_pred cCCceeeeEEeecCCCceeEEEECC-----CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcE
Q 016982 84 EGSEWVPTLVILRLNRAALCVQWSP-----KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVF 158 (379)
Q Consensus 84 ~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 158 (379)
++++.+.. .+.+|...|++++|.| ..++|++++.||.++|||+..+. +...+ .+|..+|+|+.|--+ .+
T Consensus 187 ktg~~~g~-~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~---~~~~l-sgHT~~VTCvrwGG~-gl 260 (480)
T KOG0271|consen 187 KTGQQIGR-ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT---CVRTL-SGHTASVTCVRWGGE-GL 260 (480)
T ss_pred CCCCcccc-cccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce---EEEEe-ccCccceEEEEEcCC-ce
Confidence 99875544 3478999999999977 56799999999999999999887 45666 899999999999643 58
Q ss_pred EEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEEC-----------CCCC----------
Q 016982 159 LATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWS-----------PSGN---------- 217 (379)
Q Consensus 159 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----------p~~~---------- 217 (379)
+++|+.|++|++|+. ..+.+...+.+|..+|+.++++ |.++
T Consensus 261 iySgS~DrtIkvw~a------------------~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~ 322 (480)
T KOG0271|consen 261 IYSGSQDRTIKVWRA------------------LDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQK 322 (480)
T ss_pred EEecCCCceEEEEEc------------------cchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHH
Confidence 999999999999996 5688899999999999999887 2233
Q ss_pred ---------------EEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcE
Q 016982 218 ---------------TLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIW 281 (379)
Q Consensus 218 ---------------~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~ 281 (379)
.|++|+.|.++.+|+....++.+..+.+|..-|+.+.||||++++| ++.|..+++|+...++..
T Consensus 323 ~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~l 402 (480)
T KOG0271|consen 323 KALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFL 402 (480)
T ss_pred HHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchh
Confidence 4999999999999998887777788999999999999999999999 789999999997765311
Q ss_pred EEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCc
Q 016982 282 TFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDG 361 (379)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg 361 (379)
. .+.||-+.|+.++ ++.|. ++|++||.|.
T Consensus 403 a----------------------------------------------sfRGHv~~VYqva-wsaDs----RLlVS~SkDs 431 (480)
T KOG0271|consen 403 A----------------------------------------------SFRGHVAAVYQVA-WSADS----RLLVSGSKDS 431 (480)
T ss_pred h----------------------------------------------hhhhccceeEEEE-eccCc----cEEEEcCCCc
Confidence 1 3479999999999 77776 9999999999
Q ss_pred eEEEEeCCCccccccC
Q 016982 362 KIVTWDLESQEDLLNY 377 (379)
Q Consensus 362 ~v~iW~~~~~~~~~~~ 377 (379)
++++|++++.+..+.|
T Consensus 432 TLKvw~V~tkKl~~DL 447 (480)
T KOG0271|consen 432 TLKVWDVRTKKLKQDL 447 (480)
T ss_pred eEEEEEeeeeeecccC
Confidence 9999999987765543
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.7e-52 Score=331.02 Aligned_cols=282 Identities=19% Similarity=0.215 Sum_probs=256.7
Q ss_pred ccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCC--CCEEEEEeCCCeEEEEeccC
Q 016982 8 QFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVR--SNRIVTVSHDRNSYVWNQEG 85 (379)
Q Consensus 8 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~vw~~~~ 85 (379)
+-..+|..+.|++|++.||+|+.+|.+++|+..+. ..+.+|.+|...|.++.|+|. +..+++|+.||++++|++.+
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~--~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC--NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ 250 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCc--ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence 34679999999999999999999999999999887 789999999999999999997 56899999999999999998
Q ss_pred CceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCC
Q 016982 86 SEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTD 165 (379)
Q Consensus 86 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d 165 (379)
...+..+ .+|...|..++|+|+|++|++++.|.+-++||++++.. -..+.+|...|.+++|+|||.++++|+.|
T Consensus 251 e~~l~~l--~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E----lL~QEGHs~~v~~iaf~~DGSL~~tGGlD 324 (459)
T KOG0272|consen 251 ETPLQDL--EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE----LLLQEGHSKGVFSIAFQPDGSLAATGGLD 324 (459)
T ss_pred Ccchhhh--hcchhhheeeeecCCCceeeecccccchhhcccccchh----hHhhcccccccceeEecCCCceeeccCcc
Confidence 8755555 78999999999999999999999999999999999873 22338999999999999999999999999
Q ss_pred CeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeee
Q 016982 166 GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAF 245 (379)
Q Consensus 166 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 245 (379)
..-+|||+ +++.++..+.+|..+|.+++|+|+|..||+|+.|++++|||++.... +.++.+
T Consensus 325 ~~~RvWDl------------------Rtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~-ly~ipA 385 (459)
T KOG0272|consen 325 SLGRVWDL------------------RTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE-LYTIPA 385 (459)
T ss_pred chhheeec------------------ccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccccc-ceeccc
Confidence 99999997 89999999999999999999999999999999999999999998875 588899
Q ss_pred ecCCeeeEEEec-CCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCccccc
Q 016982 246 RDLPLRDVLFVS-EKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAV 323 (379)
Q Consensus 246 ~~~~i~~~~~s~-~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (379)
|..-|+.|.|+| .|.+|+ +++|+++++|.... |..++
T Consensus 386 H~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~---~~~~k-------------------------------------- 424 (459)
T KOG0272|consen 386 HSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT---WSPLK-------------------------------------- 424 (459)
T ss_pred ccchhhheEecccCCeEEEEcccCcceeeecCCC---cccch--------------------------------------
Confidence 999999999999 677877 88999999998654 55544
Q ss_pred ccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEe
Q 016982 324 ESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWD 367 (379)
Q Consensus 324 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~ 367 (379)
.+.||.+.|.+++ .++++ ++++|+|.|.++++|.
T Consensus 425 -----sLaGHe~kV~s~D-is~d~----~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 425 -----SLAGHEGKVISLD-ISPDS----QAIATSSFDRTIKLWR 458 (459)
T ss_pred -----hhcCCccceEEEE-eccCC----ceEEEeccCceeeecc
Confidence 4479999999999 77766 9999999999999996
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.3e-50 Score=316.47 Aligned_cols=287 Identities=16% Similarity=0.250 Sum_probs=252.2
Q ss_pred cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcC-----CCCEEEEEeCCCeE
Q 016982 4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSV-----RSNRIVTVSHDRNS 78 (379)
Q Consensus 4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i 78 (379)
.+.++|...|.|++|+|||+.||+|+.||.|++||.++++ +....|.+|...|++++|.| ..++|++++.||.+
T Consensus 151 ~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~-~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~v 229 (480)
T KOG0271|consen 151 FTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ-QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSV 229 (480)
T ss_pred eeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCC-cccccccCcccceeEEeecccccCCCccceecccCCCCE
Confidence 4678999999999999999999999999999999998874 67788999999999999976 45799999999999
Q ss_pred EEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEc-----
Q 016982 79 YVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWH----- 153 (379)
Q Consensus 79 ~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----- 153 (379)
+|||+..+.++..+ .+|..+|+|+.|--+| +|++++.|++|++|+...+. +.+.+ .+|...|+.++.+
T Consensus 230 rIWd~~~~~~~~~l--sgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~---~~r~l-kGHahwvN~lalsTdy~L 302 (480)
T KOG0271|consen 230 RIWDTKLGTCVRTL--SGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGK---LCREL-KGHAHWVNHLALSTDYVL 302 (480)
T ss_pred EEEEccCceEEEEe--ccCccceEEEEEcCCc-eEEecCCCceEEEEEccchh---HHHhh-cccchheeeeeccchhhh
Confidence 99999999865554 8899999999998554 89999999999999988876 56777 8999999988876
Q ss_pred ------CCCc-------------------------EEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeec
Q 016982 154 ------PNNV-------------------------FLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDL 202 (379)
Q Consensus 154 ------p~~~-------------------------~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (379)
|.++ .|++|+.|.++.+|+. ....+++..+.+
T Consensus 303 Rtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p-----------------~~~kkpi~rmtg 365 (480)
T KOG0271|consen 303 RTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNP-----------------FKSKKPITRMTG 365 (480)
T ss_pred hccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecc-----------------cccccchhhhhc
Confidence 3233 4999999999999986 366778889999
Q ss_pred CCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcE
Q 016982 203 SFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIW 281 (379)
Q Consensus 203 ~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~ 281 (379)
|..-|+.+.||||++++|+++-|..|++||.++++. +..+.+|-.+|+.++|+.|.++|+ ++.|.++++|+....+
T Consensus 366 Hq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~-lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkK-- 442 (480)
T KOG0271|consen 366 HQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKF-LASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKK-- 442 (480)
T ss_pred hhhheeeEEECCCccEEEEeecccceeeeeCCCcch-hhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeee--
Confidence 999999999999999999999999999999999885 489999999999999999999998 6678899999865432
Q ss_pred EEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCc
Q 016982 282 TFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDG 361 (379)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg 361 (379)
+.. -+.||.++|.++. ++||| ..+++||.|.
T Consensus 443 -l~~-------------------------------------------DLpGh~DEVf~vD-wspDG----~rV~sggkdk 473 (480)
T KOG0271|consen 443 -LKQ-------------------------------------------DLPGHADEVFAVD-WSPDG----QRVASGGKDK 473 (480)
T ss_pred -ecc-------------------------------------------cCCCCCceEEEEE-ecCCC----ceeecCCCce
Confidence 111 3479999999999 87776 9999999999
Q ss_pred eEEEEe
Q 016982 362 KIVTWD 367 (379)
Q Consensus 362 ~v~iW~ 367 (379)
.+++|.
T Consensus 474 v~~lw~ 479 (480)
T KOG0271|consen 474 VLRLWR 479 (480)
T ss_pred EEEeec
Confidence 999995
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=5.1e-46 Score=282.14 Aligned_cols=287 Identities=15% Similarity=0.192 Sum_probs=248.1
Q ss_pred cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982 4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ 83 (379)
Q Consensus 4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~ 83 (379)
..|++|.+.|+++.|++|.++|++++.||.+.|||.-+. .+++.++-....|..++|+|.|++++.|+-|+...||++
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Tt--nK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTT--NKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL 126 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccc--cceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence 468999999999999999999999999999999999887 567777777889999999999999999999999999999
Q ss_pred cCC--c--eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcC-CCcE
Q 016982 84 EGS--E--WVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHP-NNVF 158 (379)
Q Consensus 84 ~~~--~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~ 158 (379)
.+. + ......+.+|.+.+.++.|-+| ..|++++.|.+..+||+++++ ....+ .+|.+.|.+++++| +++.
T Consensus 127 s~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~---~~~~f-~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 127 STRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQ---QTQVF-HGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred ccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccce---EEEEe-cCCcccEEEEecCCCCCCe
Confidence 855 1 1222335789999999999985 568899999999999999998 46666 89999999999999 8899
Q ss_pred EEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCc
Q 016982 159 LATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSP 238 (379)
Q Consensus 159 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~ 238 (379)
+++|+-|+..++||+ +.+.++++|.+|...|+++.|.|+|.-+++|+.|++.++||++...+
T Consensus 202 FvSg~cD~~aklWD~------------------R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~ 263 (343)
T KOG0286|consen 202 FVSGGCDKSAKLWDV------------------RSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQE 263 (343)
T ss_pred EEecccccceeeeec------------------cCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcE
Confidence 999999999999997 78899999999999999999999999999999999999999999775
Q ss_pred eeeeeee--ecCCeeeEEEecCCcEEEE-EeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeecccc
Q 016982 239 LAQNVAF--RDLPLRDVLFVSEKMVIGV-GFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSK 315 (379)
Q Consensus 239 ~~~~~~~--~~~~i~~~~~s~~~~~l~~-~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (379)
+ ..+.. ...+|++++||..|++|.+ ..|.++.+|+.-.....-
T Consensus 264 ~-a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg--------------------------------- 309 (343)
T KOG0286|consen 264 L-AVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVG--------------------------------- 309 (343)
T ss_pred E-eeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEE---------------------------------
Confidence 4 44432 2467999999999999886 456688888743322111
Q ss_pred ccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEe
Q 016982 316 YGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWD 367 (379)
Q Consensus 316 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~ 367 (379)
.+.||.+.|.|+. .+||| .-|+|||+|..+|||.
T Consensus 310 -------------~L~GHeNRvScl~-~s~DG----~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 310 -------------VLAGHENRVSCLG-VSPDG----MAVATGSWDSTLRIWA 343 (343)
T ss_pred -------------EeeccCCeeEEEE-ECCCC----cEEEecchhHheeecC
Confidence 3469999999999 77776 8999999999999994
No 5
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.5e-44 Score=271.33 Aligned_cols=298 Identities=20% Similarity=0.363 Sum_probs=251.1
Q ss_pred cceeccCcceeEEEeCCC-CcEEEEEecCCeEEEEEec-CCceEEEEEe-ccCCCceEEEEEcCCCCEEEEEeCCCeEEE
Q 016982 4 IAVHQFAQCITCHAWSPD-HAMVAFCPNNNEVHIYKLI-QEKWEKLHVL-QKHDQIVSGIDWSVRSNRIVTVSHDRNSYV 80 (379)
Q Consensus 4 ~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v 80 (379)
..+.+|.+.+..++|+|- |..||+++.|+.|++|+.. ...+.+...+ .+|...|.+++|+|.|++|++++.|.++.|
T Consensus 8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~I 87 (312)
T KOG0645|consen 8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVI 87 (312)
T ss_pred EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEE
Confidence 457789999999999997 8899999999999999998 4446666666 468999999999999999999999999999
Q ss_pred EeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEE
Q 016982 81 WNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLA 160 (379)
Q Consensus 81 w~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 160 (379)
|.-..+++...-.+.+|...|.+++|+++|++||+++.|+.|-||.........+...+ ..|...|..+.|+|...+|+
T Consensus 88 w~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL-~~HtqDVK~V~WHPt~dlL~ 166 (312)
T KOG0645|consen 88 WKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVL-QEHTQDVKHVIWHPTEDLLF 166 (312)
T ss_pred eecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeee-ccccccccEEEEcCCcceeE
Confidence 99988887777778899999999999999999999999999999999988877788888 89999999999999999999
Q ss_pred EeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCcee
Q 016982 161 TTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA 240 (379)
Q Consensus 161 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~ 240 (379)
++++|.+|++|+-. . .....++.++.+|...|++++|+|.|..|++++.|++++||-....-
T Consensus 167 S~SYDnTIk~~~~~------~---------dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~--- 228 (312)
T KOG0645|consen 167 SCSYDNTIKVYRDE------D---------DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL--- 228 (312)
T ss_pred EeccCCeEEEEeec------C---------CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc---
Confidence 99999999999741 0 14568899999999999999999999999999999999999865322
Q ss_pred eeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEecCC---CcEEEEEEecccccCCCCCccCCCcccccceeecccccc
Q 016982 241 QNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADET---GIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYG 317 (379)
Q Consensus 241 ~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (379)
-..|..+++.+.|. +|-+-.++.|+.+++|..... ..|++..
T Consensus 229 --~~~~sr~~Y~v~W~-~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~-------------------------------- 273 (312)
T KOG0645|consen 229 --SGMHSRALYDVPWD-NGVIASGGGDDAIRLFKESDSPDEPSWNLLA-------------------------------- 273 (312)
T ss_pred --chhcccceEeeeec-ccceEeccCCCEEEEEEecCCCCCchHHHHH--------------------------------
Confidence 12366789999998 555555888999998875421 1121110
Q ss_pred CcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCC
Q 016982 318 VGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLE 369 (379)
Q Consensus 318 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~ 369 (379)
..-..|...|++|. +.|.. ..+|++||+||.|++|.+.
T Consensus 274 ----------~~~~aHe~dVNsV~-w~p~~---~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 274 ----------KKEGAHEVDVNSVQ-WNPKV---SNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ----------hhhcccccccceEE-EcCCC---CCceeecCCCceEEEEEec
Confidence 02257999999999 65532 3799999999999999875
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.5e-44 Score=269.85 Aligned_cols=299 Identities=15% Similarity=0.175 Sum_probs=247.7
Q ss_pred cceeccCcceeEEEeCCC-CcEEEEEecCCeEEEEEecCCc---eEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEE
Q 016982 4 IAVHQFAQCITCHAWSPD-HAMVAFCPNNNEVHIYKLIQEK---WEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSY 79 (379)
Q Consensus 4 ~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 79 (379)
.++.+|.+.|+.++..+. ...++++++|..+.+|++.... ..+++.+.+|...|..+..+++|++.++++.|++++
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lr 88 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLR 88 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEE
Confidence 467899999999999886 4688899999999999997643 256889999999999999999999999999999999
Q ss_pred EEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCC--Cc
Q 016982 80 VWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPN--NV 157 (379)
Q Consensus 80 vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~ 157 (379)
+||+.+++..+.+ .+|...|.+++|++|.+++++|+.|++|++|+...... .......+.+.|.|+.|+|+ ..
T Consensus 89 lWDl~~g~~t~~f--~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck---~t~~~~~~~~WVscvrfsP~~~~p 163 (315)
T KOG0279|consen 89 LWDLATGESTRRF--VGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCK---YTIHEDSHREWVSCVRFSPNESNP 163 (315)
T ss_pred EEEecCCcEEEEE--EecCCceEEEEecCCCceeecCCCcceeeeeeecccEE---EEEecCCCcCcEEEEEEcCCCCCc
Confidence 9999999755544 78999999999999999999999999999999877642 22221334889999999998 68
Q ss_pred EEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCC
Q 016982 158 FLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPS 237 (379)
Q Consensus 158 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~ 237 (379)
+|++++.|+++++||+ ...+....+.+|.+.++.+++||||.+.++|+.||.+.+||++.++
T Consensus 164 ~Ivs~s~DktvKvWnl------------------~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k 225 (315)
T KOG0279|consen 164 IIVSASWDKTVKVWNL------------------RNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK 225 (315)
T ss_pred EEEEccCCceEEEEcc------------------CCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCc
Confidence 9999999999999997 6667778889999999999999999999999999999999999987
Q ss_pred ceeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeecccccc
Q 016982 238 PLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYG 317 (379)
Q Consensus 238 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (379)
.+ ..+. +...|.+++|+|+...|+.+.+..|+||+.+......-.+. +.. ..
T Consensus 226 ~l-ysl~-a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~-d~~--g~----------------------- 277 (315)
T KOG0279|consen 226 NL-YSLE-AFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKL-DGI--GP----------------------- 277 (315)
T ss_pred ee-Eecc-CCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccc-ccc--cc-----------------------
Confidence 53 5554 78899999999999999999999999999887543322210 000 00
Q ss_pred CcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCC
Q 016982 318 VGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLE 369 (379)
Q Consensus 318 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~ 369 (379)
...+-.....+++ ++.+| ..|..|-.|+.|++|.+.
T Consensus 278 -----------s~~~~~~~clsla-ws~dG----~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 278 -----------SSKAGDPICLSLA-WSADG----QTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred -----------ccccCCcEEEEEE-EcCCC----cEEEeeecCCcEEEEEee
Confidence 0011223345666 77666 899999999999999875
No 7
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=6.8e-44 Score=264.65 Aligned_cols=279 Identities=14% Similarity=0.175 Sum_probs=239.1
Q ss_pred cEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCcee
Q 016982 23 AMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAAL 102 (379)
Q Consensus 23 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~ 102 (379)
-+|+++++|.+|++|...++ .+..+++..+..|+.+.+.|+++.|++++. ..|++||+.++...+...+..|...|+
T Consensus 11 viLvsA~YDhTIRfWqa~tG--~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTG--ICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVT 87 (311)
T ss_pred eEEEeccCcceeeeeehhcC--eEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceE
Confidence 57899999999999999998 899999988889999999999999998876 579999999998777888889999999
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEecccccccccc
Q 016982 103 CVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKE 182 (379)
Q Consensus 103 ~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 182 (379)
.+.|..+|+++++|++||+++|||++... +.+. ..|..+|+++..+|+...|++|..+|.|++||+
T Consensus 88 aVgF~~dgrWMyTgseDgt~kIWdlR~~~---~qR~--~~~~spVn~vvlhpnQteLis~dqsg~irvWDl--------- 153 (311)
T KOG0315|consen 88 AVGFQCDGRWMYTGSEDGTVKIWDLRSLS---CQRN--YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDL--------- 153 (311)
T ss_pred EEEEeecCeEEEecCCCceEEEEeccCcc---cchh--ccCCCCcceEEecCCcceEEeecCCCcEEEEEc---------
Confidence 99999999999999999999999999865 3444 478899999999999999999999999999998
Q ss_pred ccCCCccCCcccceEEEe-ecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCC-----ceeeeeeeecCCeeeEEEe
Q 016982 183 KKEGTSSDTKFGEQILQL-DLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPS-----PLAQNVAFRDLPLRDVLFV 256 (379)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~-----~~~~~~~~~~~~i~~~~~s 256 (379)
....+...+ ......|.++...|||.+|+.+...|..++|++.+.. +.+..++.|..-+..+.+|
T Consensus 154 ---------~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lS 224 (311)
T KOG0315|consen 154 ---------GENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLS 224 (311)
T ss_pred ---------cCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEEC
Confidence 223233322 2334679999999999999999999999999986532 2345677889999999999
Q ss_pred cCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCccccccccccccccccc
Q 016982 257 SEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVN 335 (379)
Q Consensus 257 ~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 335 (379)
||+++|| ++.|.+++||+.++- .+... .+.+|..
T Consensus 225 Pd~k~lat~ssdktv~iwn~~~~--~kle~-------------------------------------------~l~gh~r 259 (311)
T KOG0315|consen 225 PDVKYLATCSSDKTVKIWNTDDF--FKLEL-------------------------------------------VLTGHQR 259 (311)
T ss_pred CCCcEEEeecCCceEEEEecCCc--eeeEE-------------------------------------------EeecCCc
Confidence 9999999 788999999997753 23222 3368999
Q ss_pred ceeeeeeecccCCcccceEEEeecCceEEEEeCCCccccccC
Q 016982 336 CINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDLLNY 377 (379)
Q Consensus 336 ~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~~~~ 377 (379)
-+..++ |+.|+ +||+||+.|+.+|+|++..++.++.+
T Consensus 260 WvWdc~-FS~dg----~YlvTassd~~~rlW~~~~~k~v~qy 296 (311)
T KOG0315|consen 260 WVWDCA-FSADG----EYLVTASSDHTARLWDLSAGKEVRQY 296 (311)
T ss_pred eEEeee-eccCc----cEEEecCCCCceeecccccCceeeec
Confidence 999999 88887 99999999999999999998877654
No 8
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8.4e-46 Score=294.20 Aligned_cols=244 Identities=18% Similarity=0.234 Sum_probs=224.7
Q ss_pred cceeccCcceeEEEeCCC--CcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEE
Q 016982 4 IAVHQFAQCITCHAWSPD--HAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVW 81 (379)
Q Consensus 4 ~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw 81 (379)
.++.+|.+.|.++.|+|. +..+|+|+.||++++|++++. .++..+.+|...|..++|+|+|++|+|++.|.+-++|
T Consensus 211 ~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e--~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlW 288 (459)
T KOG0272|consen 211 QTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE--TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLW 288 (459)
T ss_pred EEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC--cchhhhhcchhhheeeeecCCCceeeecccccchhhc
Confidence 468899999999999996 568999999999999999987 7899999999999999999999999999999999999
Q ss_pred eccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEE
Q 016982 82 NQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLAT 161 (379)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~ 161 (379)
|++++.... ...+|...|.+++|+|||.++++|+.|..-+|||++++. ..-.+ .+|..+|.+++|+|+|..|||
T Consensus 289 D~~tk~ElL--~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr---~im~L-~gH~k~I~~V~fsPNGy~lAT 362 (459)
T KOG0272|consen 289 DLETKSELL--LQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR---CIMFL-AGHIKEILSVAFSPNGYHLAT 362 (459)
T ss_pred ccccchhhH--hhcccccccceeEecCCCceeeccCccchhheeecccCc---EEEEe-cccccceeeEeECCCceEEee
Confidence 999997433 337899999999999999999999999999999999998 34444 889999999999999999999
Q ss_pred eeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCcee
Q 016982 162 TSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSP-SGNTLAYVGHNSMIYFVDDVGPSPLA 240 (379)
Q Consensus 162 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~i~v~d~~~~~~~~ 240 (379)
|+.|++++|||+ +...++.++.+|..-|+.+.|+| .|.+|++++.|+++++|...+.. ++
T Consensus 363 gs~Dnt~kVWDL------------------R~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~-~~ 423 (459)
T KOG0272|consen 363 GSSDNTCKVWDL------------------RMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWS-PL 423 (459)
T ss_pred cCCCCcEEEeee------------------cccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcc-cc
Confidence 999999999998 55667899999999999999999 78999999999999999987766 56
Q ss_pred eeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEE
Q 016982 241 QNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFA 274 (379)
Q Consensus 241 ~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~ 274 (379)
+.+.+|.+.|.++..++|+++++ ++.|.++++|.
T Consensus 424 ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 424 KSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred hhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999999999999999999888 78999999985
No 9
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=8.5e-46 Score=292.96 Aligned_cols=284 Identities=16% Similarity=0.216 Sum_probs=244.0
Q ss_pred cCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCce
Q 016982 9 FAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEW 88 (379)
Q Consensus 9 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~ 88 (379)
.+.+|..+.|.|+|+.|++|+..|.+.+|+... +.....++.|+.+|.++.|++++.++++|+.+|.|++|+......
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~--fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV 172 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS--FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV 172 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCce--eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh
Confidence 356899999999999999999999999999754 345566789999999999999999999999999999999876652
Q ss_pred eeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeE
Q 016982 89 VPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKC 168 (379)
Q Consensus 89 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i 168 (379)
. .+ ...|...|++++|+|+...++++++||+|+|||...... ...+ .+|.-.|.+++|+|...++++++.|..|
T Consensus 173 k-~~-~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke---e~vL-~GHgwdVksvdWHP~kgLiasgskDnlV 246 (464)
T KOG0284|consen 173 K-II-QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE---ERVL-RGHGWDVKSVDWHPTKGLIASGSKDNLV 246 (464)
T ss_pred H-Hh-hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch---hhee-ccCCCCcceeccCCccceeEEccCCcee
Confidence 2 22 133458999999999999999999999999999988773 4555 8999999999999999999999999999
Q ss_pred EEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecC
Q 016982 169 RVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDL 248 (379)
Q Consensus 169 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 248 (379)
++||. +++.|+.++..|...|..+.|+|++++|+++|.|..++++|+++.+++ ..+++|..
T Consensus 247 KlWDp------------------rSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl-~~~r~Hkk 307 (464)
T KOG0284|consen 247 KLWDP------------------RSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKEL-FTYRGHKK 307 (464)
T ss_pred EeecC------------------CCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHH-HHhhcchh
Confidence 99996 899999999999999999999999999999999999999999976654 88889999
Q ss_pred CeeeEEEecCC-cEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccc
Q 016982 249 PLRDVLFVSEK-MVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESS 326 (379)
Q Consensus 249 ~i~~~~~s~~~-~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (379)
.++++.|+|-. .+++ +|.|+.+..|...... +.
T Consensus 308 dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~---------------------------------------------p~ 342 (464)
T KOG0284|consen 308 DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE---------------------------------------------PL 342 (464)
T ss_pred hheeeccccccccceeeccCCCceEEEeccccc---------------------------------------------cc
Confidence 99999999943 3444 8899999988754111 01
Q ss_pred cccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCC
Q 016982 327 RTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLE 369 (379)
Q Consensus 327 ~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~ 369 (379)
..+..+|...|++++++ |-|.+|+||+.|.++|+|.-.
T Consensus 343 ~~i~~AHd~~iwsl~~h-----PlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 343 GEIPPAHDGEIWSLAYH-----PLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred cCCCcccccceeeeecc-----ccceeEeecCCCcceeeeccC
Confidence 11335899999999954 445999999999999999754
No 10
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=100.00 E-value=1e-42 Score=267.60 Aligned_cols=359 Identities=53% Similarity=0.956 Sum_probs=319.4
Q ss_pred CcccceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCc-eEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEE
Q 016982 1 MAAIAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEK-WEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSY 79 (379)
Q Consensus 1 m~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 79 (379)
|+...++-...+|+|.+|++|+..+|++.++..|.||.....+ ++..+++..|...|+.+.|+|..+.|++++.|..-+
T Consensus 1 ~~~~~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnay 80 (361)
T KOG1523|consen 1 MAVVVFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAY 80 (361)
T ss_pred CceEEeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcc
Confidence 4455566668999999999999999999999999999999887 899999999999999999999999999999999999
Q ss_pred EEec-cCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcE
Q 016982 80 VWNQ-EGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVF 158 (379)
Q Consensus 80 vw~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 158 (379)
+|.. ..+++.+.+.+..++..++++.|+|.++.|++|+....|.||-++..+.|++.+.+...+...|.+++|+|++-+
T Consensus 81 Vw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVL 160 (361)
T KOG1523|consen 81 VWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVL 160 (361)
T ss_pred ccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcce
Confidence 9999 788999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred EEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCc
Q 016982 159 LATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSP 238 (379)
Q Consensus 159 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~ 238 (379)
|++|+.|+.++||...++++|.++.+.++....+.++.+.++....+.+..+.|+|+|..|+..+.|..+.+-|...+.+
T Consensus 161 laaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~ 240 (361)
T KOG1523|consen 161 LAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSE 240 (361)
T ss_pred ecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCch
Confidence 99999999999999999999999999999999999999888877788999999999999999999999999999888765
Q ss_pred eeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccC
Q 016982 239 LAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGV 318 (379)
Q Consensus 239 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (379)
.++.+.....|..++.|-.+...+++++|....+|..++.+.|.+...++.+....... ...++.+|++.+++++
T Consensus 241 ~v~~~~~~~lP~ls~~~ise~~vv~ag~~c~P~lf~~~~~~~l~~~~~ld~p~~s~s~~-----lt~a~~kF~~~d~k~~ 315 (361)
T KOG1523|consen 241 RVQSVATAQLPLLSVSWISENSVVAAGYDCGPVLFVTDEEGGLSFARRLDAPKASSSSP-----LTSAWRKFLGMDRKGR 315 (361)
T ss_pred hccchhhccCCceeeEeecCCceeecCCCCCceEEEeccccceeeehhcCCccccCCch-----hHHHHHHHhccccccc
Confidence 55666656689999999999999999999999999999988899999888765554322 2237888998888877
Q ss_pred cccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeC
Q 016982 319 GNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDL 368 (379)
Q Consensus 319 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~ 368 (379)
.+...... ...|.+.|+.++.|.... +.-..+-|+|.||.|.+|++
T Consensus 316 ~~~~~~~~---~~~h~N~i~~l~~~~~~~-~~i~~f~t~g~Dg~~viw~l 361 (361)
T KOG1523|consen 316 TENDRSAR---WGAHQNCITSLRPFAGGK-GKITKFSTSGLDGKLVIWDL 361 (361)
T ss_pred cccccccc---chHhHhhhhhhhecccCC-cceEEEEecCccceEEEecC
Confidence 66554332 467999999999888443 55568889999999999986
No 11
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.5e-40 Score=270.13 Aligned_cols=296 Identities=20% Similarity=0.287 Sum_probs=236.8
Q ss_pred ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEec---cCCCceEEEEEcCCCCEEEEEeCCCeEEEE
Q 016982 5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQ---KHDQIVSGIDWSVRSNRIVTVSHDRNSYVW 81 (379)
Q Consensus 5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw 81 (379)
.+..|..-|.|+.|+|||+++|+++.||+|.+||-.++ +.+..+. +|.+.|.+++|+||+.++++++.|.+++||
T Consensus 185 s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktg--e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIW 262 (603)
T KOG0318|consen 185 SFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTG--EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIW 262 (603)
T ss_pred cccccccceeeEEECCCCCeEEEecCCccEEEEcCCCc--cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEE
Confidence 45668889999999999999999999999999999887 6777777 899999999999999999999999999999
Q ss_pred eccCCceeeeE-----------------------------------------EeecCCCceeEEEECCCCCEEEEEeCCC
Q 016982 82 NQEGSEWVPTL-----------------------------------------VILRLNRAALCVQWSPKENKFAVGSGAK 120 (379)
Q Consensus 82 ~~~~~~~~~~~-----------------------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 120 (379)
|+.+.+++..+ ...+|...|+++..+|++++|++|+.||
T Consensus 263 dVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG 342 (603)
T KOG0318|consen 263 DVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDG 342 (603)
T ss_pred EeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCc
Confidence 98776443322 2457888999999999999999999999
Q ss_pred eEEEEEeecCCceeE----------------------------EEEE-------------e-------------------
Q 016982 121 TVCICYYEQENNWWV----------------------------SKLI-------------R------------------- 140 (379)
Q Consensus 121 ~v~i~~~~~~~~~~~----------------------------~~~~-------------~------------------- 140 (379)
.|.-|+...+....+ .+.+ .
T Consensus 343 ~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv 422 (603)
T KOG0318|consen 343 HINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVV 422 (603)
T ss_pred eEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEE
Confidence 999999865431100 0000 0
Q ss_pred ---------ec--------CCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecC
Q 016982 141 ---------KR--------HDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS 203 (379)
Q Consensus 141 ---------~~--------~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (379)
.. -.-...+++++|+++.++.|+.|+.++||.+.. ...........|
T Consensus 423 ~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g----------------~~l~ee~~~~~h 486 (603)
T KOG0318|consen 423 ACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSG----------------DELKEEAKLLEH 486 (603)
T ss_pred EecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecC----------------Ccccceeeeecc
Confidence 00 011235788899999999999999999998731 111233345678
Q ss_pred CcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEE
Q 016982 204 FSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWT 282 (379)
Q Consensus 204 ~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~ 282 (379)
.++|+.++||||+.+||++...+.+.+||+.+.+........|...|.+++|+|+..++| ++-|..+.+|+.+.....-
T Consensus 487 ~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i 566 (603)
T KOG0318|consen 487 RAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHI 566 (603)
T ss_pred cCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhhe
Confidence 999999999999999999999999999999988765566667999999999999999999 5568899999876533211
Q ss_pred EEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCce
Q 016982 283 FIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGK 362 (379)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~ 362 (379)
. +..+|...|+.++|..+ ..|+|.|.|..
T Consensus 567 ~---------------------------------------------iknAH~~gVn~v~wlde------~tvvSsG~Da~ 595 (603)
T KOG0318|consen 567 I---------------------------------------------IKNAHLGGVNSVAWLDE------STVVSSGQDAN 595 (603)
T ss_pred E---------------------------------------------eccccccCceeEEEecC------ceEEeccCcce
Confidence 1 22579888999996533 58999999999
Q ss_pred EEEEeCC
Q 016982 363 IVTWDLE 369 (379)
Q Consensus 363 v~iW~~~ 369 (379)
|++|++.
T Consensus 596 iK~W~v~ 602 (603)
T KOG0318|consen 596 IKVWNVT 602 (603)
T ss_pred eEEeccc
Confidence 9999874
No 12
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.3e-41 Score=289.08 Aligned_cols=247 Identities=21% Similarity=0.270 Sum_probs=222.9
Q ss_pred eeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCc-----------------------------eEEEEEeccCCCc
Q 016982 6 VHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEK-----------------------------WEKLHVLQKHDQI 56 (379)
Q Consensus 6 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~-----------------------------~~~~~~~~~~~~~ 56 (379)
++.....++|+.|++|+++||.|-.|..|++|.+...+ .....++.+|.++
T Consensus 374 ~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GP 453 (707)
T KOG0263|consen 374 FHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGP 453 (707)
T ss_pred EEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCc
Confidence 44456789999999999999999999999999987311 1234568899999
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEE
Q 016982 57 VSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVS 136 (379)
Q Consensus 57 v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~ 136 (379)
|..+.|+|+.++|++++.|+++++|.+.+..+...+ .+|..+|+++.|+|.|-++|+++.|++-++|..+... ..
T Consensus 454 Vyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y--~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~---Pl 528 (707)
T KOG0263|consen 454 VYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIY--KGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK---PL 528 (707)
T ss_pred eeeeeecccccceeeccCCcceeeeecccceeEEEe--cCCCcceeeEEecCCceEEEecCCCceeeeeecccCC---ch
Confidence 999999999999999999999999999998865555 6899999999999999999999999999999988866 35
Q ss_pred EEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCC
Q 016982 137 KLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSG 216 (379)
Q Consensus 137 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 216 (379)
+.+ .+|.+.|.|+.|+|+..|+++|+.|.+|++||+ .++..++.|.+|.++|.+++|||+|
T Consensus 529 Rif-aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv------------------~~G~~VRiF~GH~~~V~al~~Sp~G 589 (707)
T KOG0263|consen 529 RIF-AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDV------------------STGNSVRIFTGHKGPVTALAFSPCG 589 (707)
T ss_pred hhh-cccccccceEEECCcccccccCCCCceEEEEEc------------------CCCcEEEEecCCCCceEEEEEcCCC
Confidence 666 899999999999999999999999999999997 7899999999999999999999999
Q ss_pred CEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecC
Q 016982 217 NTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADE 277 (379)
Q Consensus 217 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~ 277 (379)
++|++|+.|+.|.+||+.++.. +..+.+|.+.|.++.|+.||..|+ +|.|+++++|+...
T Consensus 590 r~LaSg~ed~~I~iWDl~~~~~-v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 590 RYLASGDEDGLIKIWDLANGSL-VKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred ceEeecccCCcEEEEEcCCCcc-hhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 9999999999999999999874 477788999999999999999988 77899999998654
No 13
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-41 Score=264.91 Aligned_cols=287 Identities=16% Similarity=0.179 Sum_probs=254.2
Q ss_pred cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982 4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ 83 (379)
Q Consensus 4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~ 83 (379)
..+.+|..+|+.+-|+|+-..+++++.|++|++||..++ +....+++|.+.+..++|+..|++|++++.|-.+++||.
T Consensus 102 ~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg--~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~ 179 (406)
T KOG0295|consen 102 QKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETG--ELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDF 179 (406)
T ss_pred hhhhccccceeeeeeccCceEEEEecCCceEEEEEccch--hhhhhhhccccceeEEEEecCccEEEecCCccchhheeH
Confidence 346789999999999999999999999999999999998 668999999999999999999999999999999999999
Q ss_pred cCC-ceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEe
Q 016982 84 EGS-EWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATT 162 (379)
Q Consensus 84 ~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~ 162 (379)
.+. +++... .+|...|.++.|-|.|.++++++.|.+|+.|++.++- +.+.+ .+|...|..++.+.||.+++++
T Consensus 180 ~~~~~c~ks~--~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~---cv~t~-~~h~ewvr~v~v~~DGti~As~ 253 (406)
T KOG0295|consen 180 DTFFRCIKSL--IGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGY---CVKTF-PGHSEWVRMVRVNQDGTIIASC 253 (406)
T ss_pred HHHHHHHHHh--cCcccceeeEEEEecCCeeeecccccceeEEecccce---eEEec-cCchHhEEEEEecCCeeEEEec
Confidence 873 333333 6788999999999999999999999999999999987 57777 8999999999999999999999
Q ss_pred eCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCC---------------CCEEEEEcCCCe
Q 016982 163 STDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPS---------------GNTLAYVGHNSM 227 (379)
Q Consensus 163 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---------------~~~l~~~~~d~~ 227 (379)
+.|.++++|-+ .+.++...+..|..+|-+++|.|. +.++++++.|++
T Consensus 254 s~dqtl~vW~~------------------~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDkt 315 (406)
T KOG0295|consen 254 SNDQTLRVWVV------------------ATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKT 315 (406)
T ss_pred CCCceEEEEEe------------------ccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccce
Confidence 99999999986 677778888899999999999873 358999999999
Q ss_pred EEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccc
Q 016982 228 IYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEA 306 (379)
Q Consensus 228 i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (379)
|++||+.++. ++.++.+|...|..++|+|.|+||+ ++.|+++++|++.+..+.+.
T Consensus 316 Ik~wdv~tg~-cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~----------------------- 371 (406)
T KOG0295|consen 316 IKIWDVSTGM-CLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKT----------------------- 371 (406)
T ss_pred EEEEeccCCe-EEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeec-----------------------
Confidence 9999999987 6688999999999999999999998 67888999999887543332
Q ss_pred cceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeC
Q 016982 307 FGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDL 368 (379)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~ 368 (379)
+.+|..-|++++ |..+. .+++||+.|..+++|..
T Consensus 372 -----------------------~~ah~hfvt~lD-fh~~~----p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 372 -----------------------LEAHEHFVTSLD-FHKTA----PYVVTGSVDQTVKVWEC 405 (406)
T ss_pred -----------------------cCCCcceeEEEe-cCCCC----ceEEeccccceeeeeec
Confidence 246888999999 55554 69999999999999975
No 14
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=7.3e-41 Score=260.99 Aligned_cols=295 Identities=16% Similarity=0.192 Sum_probs=255.5
Q ss_pred ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982 5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE 84 (379)
Q Consensus 5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~ 84 (379)
.+.+|.+.|.|+++.|.+.+|++|+.|++++|||+.++ ++..++.+|-..|..+++|+...|+++++.|+.|+.||++
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg--~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe 223 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG--QLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLE 223 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccC--eEEEeecchhheeeeeeecccCceEEEecCCCeeEEEech
Confidence 46789999999999999999999999999999999998 7888999999999999999999999999999999999999
Q ss_pred CCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC
Q 016982 85 GSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST 164 (379)
Q Consensus 85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 164 (379)
..+.++.+ .+|-..|.+++.+|.-..|++|+.|..+++||+++... ...+ .+|..+|..+.+.|-+..+++|+.
T Consensus 224 ~nkvIR~Y--hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~---V~~l-~GH~~~V~~V~~~~~dpqvit~S~ 297 (460)
T KOG0285|consen 224 YNKVIRHY--HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRAS---VHVL-SGHTNPVASVMCQPTDPQVITGSH 297 (460)
T ss_pred hhhhHHHh--ccccceeEEEeccccceeEEecCCcceEEEeeecccce---EEEe-cCCCCcceeEEeecCCCceEEecC
Confidence 99977776 78999999999999999999999999999999999873 5555 899999999999998899999999
Q ss_pred CCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeee
Q 016982 165 DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVA 244 (379)
Q Consensus 165 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~ 244 (379)
|++|++||+ ..++...++..|...+.+++.+|....+++++.| .|+-|++..+.-+ +.+.
T Consensus 298 D~tvrlWDl------------------~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~-~nls 357 (460)
T KOG0285|consen 298 DSTVRLWDL------------------RAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFL-QNLS 357 (460)
T ss_pred CceEEEeee------------------ccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchh-hccc
Confidence 999999997 7788888999999999999999999999988776 5899999988744 6688
Q ss_pred eecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccc
Q 016982 245 FRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVE 324 (379)
Q Consensus 245 ~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (379)
+|..-|++++...||-+++++..+.+.+|+...+..++.......+ |.
T Consensus 358 gh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqp--------------------------GS------ 405 (460)
T KOG0285|consen 358 GHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQP--------------------------GS------ 405 (460)
T ss_pred cccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccC--------------------------Cc------
Confidence 9999999999999999998998899999987665433332211000 00
Q ss_pred cccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCC
Q 016982 325 SSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLES 370 (379)
Q Consensus 325 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~ 370 (379)
..-+..|.+.+ |...+ ..|+||..|.+|++|.-.+
T Consensus 406 ------l~sEagI~as~-fDktg----~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 406 ------LESEAGIFASC-FDKTG----SRLITGEADKTIKMYKEDE 440 (460)
T ss_pred ------cccccceeEEe-ecccC----ceEEeccCCcceEEEeccc
Confidence 01245688887 76555 8999999999999998654
No 15
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.8e-40 Score=252.87 Aligned_cols=287 Identities=13% Similarity=0.106 Sum_probs=241.2
Q ss_pred cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982 4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ 83 (379)
Q Consensus 4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~ 83 (379)
+.+.+|++.|+.+.|+|+|.+||+|+.|..|.+|+.... .+-...+++|.+.|..+.|.+|++.|++++.|++++.||+
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd-ceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGD-CENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccc-ccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence 457889999999999999999999999999999997654 3667788899999999999999999999999999999999
Q ss_pred cCCceeeeEEeecCCCceeEEEECCCC-CEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEe
Q 016982 84 EGSEWVPTLVILRLNRAALCVQWSPKE-NKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATT 162 (379)
Q Consensus 84 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~ 162 (379)
++++....+ ..|..-|..+.-+.-| .++.+++.|+++++||++... ..+.+ ....+++++.|..++..+.+|
T Consensus 120 ~tG~~~rk~--k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~---~~~t~--~~kyqltAv~f~d~s~qv~sg 192 (338)
T KOG0265|consen 120 ETGKRIRKH--KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE---AIKTF--ENKYQLTAVGFKDTSDQVISG 192 (338)
T ss_pred ccceeeehh--ccccceeeecCccccCCeEEEecCCCceEEEEeecccc---hhhcc--ccceeEEEEEecccccceeec
Confidence 999976665 6788889888854444 466778889999999999877 34443 456788999999999999999
Q ss_pred eCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCC---Cce
Q 016982 163 STDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGP---SPL 239 (379)
Q Consensus 163 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~---~~~ 239 (379)
+-|+.|++||+ +.....+.+.+|...|+.+..+|+|.++.+-+.|.++++||++-- .++
T Consensus 193 gIdn~ikvWd~------------------r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~ 254 (338)
T KOG0265|consen 193 GIDNDIKVWDL------------------RKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRC 254 (338)
T ss_pred cccCceeeecc------------------ccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCce
Confidence 99999999997 677889999999999999999999999999999999999998653 334
Q ss_pred eeeeeeec----CCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccc
Q 016982 240 AQNVAFRD----LPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQS 314 (379)
Q Consensus 240 ~~~~~~~~----~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (379)
+..+.+|. .....++|+|++..+. ++.|..+++|+....+ ++ |
T Consensus 255 v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~---~l--------------------------y--- 302 (338)
T KOG0265|consen 255 VKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRR---IL--------------------------Y--- 302 (338)
T ss_pred EEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccccc---EE--------------------------E---
Confidence 56666553 2356789999999887 6788899999866533 11 1
Q ss_pred cccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEe
Q 016982 315 KYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWD 367 (379)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~ 367 (379)
.+.||.+.|++++|+ |. ..+|.+|+.|.+|.+=+
T Consensus 303 --------------klpGh~gsvn~~~Fh-p~----e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 303 --------------KLPGHYGSVNEVDFH-PT----EPIILSCSSDKTIYLGE 336 (338)
T ss_pred --------------EcCCcceeEEEeeec-CC----CcEEEEeccCceeEeec
Confidence 347999999999954 44 48999999999998744
No 16
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.1e-40 Score=267.09 Aligned_cols=295 Identities=17% Similarity=0.286 Sum_probs=243.6
Q ss_pred ceeccCcceeEEEeCCCCc-EEEEEecCCeEEEEEecCCceE--EEEEec------c----CCCceEEEEEcCCCCEEEE
Q 016982 5 AVHQFAQCITCHAWSPDHA-MVAFCPNNNEVHIYKLIQEKWE--KLHVLQ------K----HDQIVSGIDWSVRSNRIVT 71 (379)
Q Consensus 5 ~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~~~~~~~~~--~~~~~~------~----~~~~v~~~~~~~~~~~l~~ 71 (379)
.+..|..+|.+++|+|-.. .+++|+.|-..++|++...... ....|+ + ....|++++|+.+|..||+
T Consensus 173 kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~Lat 252 (524)
T KOG0273|consen 173 KVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLAT 252 (524)
T ss_pred eeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEE
Confidence 3455999999999999665 8999999999999999752111 111111 1 2357999999999999999
Q ss_pred EeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEE
Q 016982 72 VSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVA 151 (379)
Q Consensus 72 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~ 151 (379)
|+.||.+++|+..... ... +..|+++|.++.|+..|++|++++.|+++.+||..++. ..+.+ .-|..+-.++.
T Consensus 253 G~~~G~~riw~~~G~l-~~t--l~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~---~~q~f-~~~s~~~lDVd 325 (524)
T KOG0273|consen 253 GSEDGEARIWNKDGNL-IST--LGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGT---VKQQF-EFHSAPALDVD 325 (524)
T ss_pred eecCcEEEEEecCchh-hhh--hhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCce---EEEee-eeccCCccceE
Confidence 9999999999987654 333 36799999999999999999999999999999998887 45555 66777778889
Q ss_pred EcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEE
Q 016982 152 WHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFV 231 (379)
Q Consensus 152 ~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~ 231 (379)
|-. ...+++++.|+.|+|+.+ ....++.++.+|.++|.++.|+|.|.+|++++.|++++||
T Consensus 326 W~~-~~~F~ts~td~~i~V~kv------------------~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiW 386 (524)
T KOG0273|consen 326 WQS-NDEFATSSTDGCIHVCKV------------------GEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIW 386 (524)
T ss_pred Eec-CceEeecCCCceEEEEEe------------------cCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEee
Confidence 974 457899999999999987 4567888999999999999999999999999999999999
Q ss_pred ECCCCCceeeeeeeecCCeeeEEEecCCc----------EEEEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCC
Q 016982 232 DDVGPSPLAQNVAFRDLPLRDVLFVSEKM----------VIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGS 301 (379)
Q Consensus 232 d~~~~~~~~~~~~~~~~~i~~~~~s~~~~----------~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (379)
.+.... ....+..|...|..+.|+|+|. ++.++.|..+++|+........
T Consensus 387 s~~~~~-~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~------------------- 446 (524)
T KOG0273|consen 387 SMGQSN-SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIH------------------- 446 (524)
T ss_pred ecCCCc-chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeE-------------------
Confidence 977655 4478889999999999999653 4458899999999866543211
Q ss_pred CcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCccccccC
Q 016982 302 QFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDLLNY 377 (379)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~~~~ 377 (379)
.+..|..+|.+|+ |++++ +++|+|+.||.|.+|+.++++..+.+
T Consensus 447 ---------------------------~f~kH~~pVysva-fS~~g----~ylAsGs~dg~V~iws~~~~~l~~s~ 490 (524)
T KOG0273|consen 447 ---------------------------TLMKHQEPVYSVA-FSPNG----RYLASGSLDGCVHIWSTKTGKLVKSY 490 (524)
T ss_pred ---------------------------eeccCCCceEEEE-ecCCC----cEEEecCCCCeeEeccccchheeEee
Confidence 2257999999999 88776 99999999999999999999887765
No 17
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=7.4e-40 Score=263.92 Aligned_cols=279 Identities=19% Similarity=0.355 Sum_probs=242.4
Q ss_pred CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCcee
Q 016982 10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWV 89 (379)
Q Consensus 10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~ 89 (379)
...|++++|+.+|.+||+|..||.++||+... ..+.++..|.++|.++.|+..|++|++++.|+++.+||..+++..
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G---~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~ 311 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDG---NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVK 311 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCc---hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEE
Confidence 36799999999999999999999999999887 488889999999999999999999999999999999999999877
Q ss_pred eeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEE
Q 016982 90 PTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCR 169 (379)
Q Consensus 90 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~ 169 (379)
..+.+ |..+..++.|-.+ ..+++++.|+.|+++.+....+ ...+ .+|.++|.++.|+|.+.+|++++.|++++
T Consensus 312 q~f~~--~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P---~~t~-~GH~g~V~alk~n~tg~LLaS~SdD~Tlk 384 (524)
T KOG0273|consen 312 QQFEF--HSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRP---VKTF-IGHHGEVNALKWNPTGSLLASCSDDGTLK 384 (524)
T ss_pred Eeeee--ccCCccceEEecC-ceEeecCCCceEEEEEecCCCc---ceee-ecccCceEEEEECCCCceEEEecCCCeeE
Confidence 77754 6666688889744 5689999999999999887773 5566 68999999999999999999999999999
Q ss_pred EEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCC---------CEEEEEcCCCeEEEEECCCCCcee
Q 016982 170 VFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSG---------NTLAYVGHNSMIYFVDDVGPSPLA 240 (379)
Q Consensus 170 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~---------~~l~~~~~d~~i~v~d~~~~~~~~ 240 (379)
||.. ....+...+..|...|..+.|+|.| ..+++++.|++|++||+..+.+ +
T Consensus 385 iWs~------------------~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~-i 445 (524)
T KOG0273|consen 385 IWSM------------------GQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVP-I 445 (524)
T ss_pred eeec------------------CCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCce-e
Confidence 9985 5677788899999999999999964 5689999999999999999875 4
Q ss_pred eeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCc
Q 016982 241 QNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVG 319 (379)
Q Consensus 241 ~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (379)
..+..|..+|++++|+|+|+++| ++.|+.+.+|+......++..
T Consensus 446 ~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~----------------------------------- 490 (524)
T KOG0273|consen 446 HTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSY----------------------------------- 490 (524)
T ss_pred EeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEee-----------------------------------
Confidence 77888999999999999999999 567999999997765544431
Q ss_pred ccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCC
Q 016982 320 NDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLE 369 (379)
Q Consensus 320 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~ 369 (379)
.-.+.|..++ |+.+| .+|..+-.||.+++-|++
T Consensus 491 ------------~~~~~Ifel~-Wn~~G----~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 491 ------------QGTGGIFELC-WNAAG----DKLGACASDGSVCVLDLR 523 (524)
T ss_pred ------------cCCCeEEEEE-EcCCC----CEEEEEecCCCceEEEec
Confidence 2345689999 77766 789999999999998875
No 18
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-39 Score=244.05 Aligned_cols=259 Identities=16% Similarity=0.191 Sum_probs=220.6
Q ss_pred eEEEEEeccCCCceEEEEEcCCC-CEEEEEeCCCeEEEEeccCCcee---eeEEeecCCCceeEEEECCCCCEEEEEeCC
Q 016982 44 WEKLHVLQKHDQIVSGIDWSVRS-NRIVTVSHDRNSYVWNQEGSEWV---PTLVILRLNRAALCVQWSPKENKFAVGSGA 119 (379)
Q Consensus 44 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~vw~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 119 (379)
.....++++|++.|+.++..+.+ +.+++++.|.++.+|++...... +...+.+|...|..+..+++|+++++++.|
T Consensus 5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD 84 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD 84 (315)
T ss_pred heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecccc
Confidence 35667899999999999998875 68899999999999998765321 233447899999999999999999999999
Q ss_pred CeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEE
Q 016982 120 KTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQ 199 (379)
Q Consensus 120 ~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (379)
+.+++||+.+++ ..+.+ .+|...|.+++|+||++.+++|+.|.+|++|++ .+.+..+
T Consensus 85 ~~lrlWDl~~g~---~t~~f-~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt-------------------~g~ck~t 141 (315)
T KOG0279|consen 85 GTLRLWDLATGE---STRRF-VGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNT-------------------LGVCKYT 141 (315)
T ss_pred ceEEEEEecCCc---EEEEE-EecCCceEEEEecCCCceeecCCCcceeeeeee-------------------cccEEEE
Confidence 999999999986 46666 899999999999999999999999999999996 4677777
Q ss_pred eecC--CcceEEEEECCC--CCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEE
Q 016982 200 LDLS--FSWAFGVKWSPS--GNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFA 274 (379)
Q Consensus 200 ~~~~--~~~v~~~~~sp~--~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~ 274 (379)
+..+ ..+|.++.|+|+ ..++++++.|++|++||+++.+ +...+.+|.+-++.+++||||.+.+ ++.|+.+.+|+
T Consensus 142 ~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~-l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~Lwd 220 (315)
T KOG0279|consen 142 IHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ-LRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWD 220 (315)
T ss_pred EecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc-hhhccccccccEEEEEECCCCCEEecCCCCceEEEEE
Confidence 7544 789999999997 7789999999999999998865 5578889999999999999999999 67899999999
Q ss_pred ecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceE
Q 016982 275 ADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRF 354 (379)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l 354 (379)
+++.+.... .+|...|.+++ |+|.. +.
T Consensus 221 L~~~k~lys-----------------------------------------------l~a~~~v~sl~-fspnr-----yw 247 (315)
T KOG0279|consen 221 LNEGKNLYS-----------------------------------------------LEAFDIVNSLC-FSPNR-----YW 247 (315)
T ss_pred ccCCceeEe-----------------------------------------------ccCCCeEeeEE-ecCCc-----ee
Confidence 987653211 35888999999 87763 55
Q ss_pred EEeecCceEEEEeCCCccccccCCC
Q 016982 355 TTSGLDGKIVTWDLESQEDLLNYHL 379 (379)
Q Consensus 355 ~t~~~Dg~v~iW~~~~~~~~~~~~~ 379 (379)
+.+..+-.|+|||+.++.++..|++
T Consensus 248 L~~at~~sIkIwdl~~~~~v~~l~~ 272 (315)
T KOG0279|consen 248 LCAATATSIKIWDLESKAVVEELKL 272 (315)
T ss_pred EeeccCCceEEEeccchhhhhhccc
Confidence 5566677799999999998887754
No 19
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.7e-38 Score=265.74 Aligned_cols=286 Identities=22% Similarity=0.323 Sum_probs=243.4
Q ss_pred cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982 4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ 83 (379)
Q Consensus 4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~ 83 (379)
..+.+|.++|++++|+|++++|++++.+|.|++|++.++ +....+..|...+..+.|+|++++|++++.++.|++|++
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~ 80 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG--ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL 80 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCC--CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEc
Confidence 356789999999999999999999999999999999887 466777889999999999999999999999999999999
Q ss_pred cCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee
Q 016982 84 EGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS 163 (379)
Q Consensus 84 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 163 (379)
.+++....+ ..|...+.++.|+|+++++++++.++.+.+||++..+ ....+ ..|...+.+++|+|++.++++++
T Consensus 81 ~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~-~~~~~~i~~~~~~~~~~~l~~~~ 154 (289)
T cd00200 81 ETGECVRTL--TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK---CLTTL-RGHTDWVNSVAFSPDGTFVASSS 154 (289)
T ss_pred CcccceEEE--eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE---EEEEe-ccCCCcEEEEEEcCcCCEEEEEc
Confidence 987644444 5677899999999998888888889999999998665 34455 57888999999999999999888
Q ss_pred CCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeee
Q 016982 164 TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNV 243 (379)
Q Consensus 164 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 243 (379)
.++.+++||+ +.++.+..+..|...+.++.|+|+++.+++++.++.+++||+.... ....+
T Consensus 155 ~~~~i~i~d~------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~-~~~~~ 215 (289)
T cd00200 155 QDGTIKLWDL------------------RTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK-CLGTL 215 (289)
T ss_pred CCCcEEEEEc------------------cccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCc-eecch
Confidence 8999999997 4566677777888899999999999999999999999999998765 34666
Q ss_pred eeecCCeeeEEEecCCcEEEEEe-CCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccc
Q 016982 244 AFRDLPLRDVLFVSEKMVIGVGF-DCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDA 322 (379)
Q Consensus 244 ~~~~~~i~~~~~s~~~~~l~~~~-d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (379)
..|..++.++.|+|++.+++++. ++.+.+|+........
T Consensus 216 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~---------------------------------------- 255 (289)
T cd00200 216 RGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQ---------------------------------------- 255 (289)
T ss_pred hhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEE----------------------------------------
Confidence 67788999999999988888776 9999999876432111
Q ss_pred cccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEe
Q 016982 323 VESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWD 367 (379)
Q Consensus 323 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~ 367 (379)
.+.+|...|.+++ +.+++ .+|++++.||.|++|+
T Consensus 256 ------~~~~~~~~i~~~~-~~~~~----~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 256 ------TLSGHTNSVTSLA-WSPDG----KRLASGSADGTIRIWD 289 (289)
T ss_pred ------EccccCCcEEEEE-ECCCC----CEEEEecCCCeEEecC
Confidence 1236888999999 66555 8999999999999996
No 20
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.1e-39 Score=239.93 Aligned_cols=255 Identities=14% Similarity=0.191 Sum_probs=220.2
Q ss_pred eeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccC
Q 016982 6 VHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEG 85 (379)
Q Consensus 6 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~ 85 (379)
+..-.+.|+.+...|+++.||+++. ..|++||+.+++..++.++.+|...|+++.|..+|+.+++|+.||+++|||++.
T Consensus 36 iqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~ 114 (311)
T KOG0315|consen 36 IQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS 114 (311)
T ss_pred EecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccC
Confidence 3444789999999999999999976 699999999987779999999999999999999999999999999999999999
Q ss_pred CceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCC
Q 016982 86 SEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTD 165 (379)
Q Consensus 86 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d 165 (379)
..+.+.+ .+..+|+++..+|+-..|++|..+|.|++||+.... ....+.......|.++...|||.+++.+...
T Consensus 115 ~~~qR~~---~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~---c~~~liPe~~~~i~sl~v~~dgsml~a~nnk 188 (311)
T KOG0315|consen 115 LSCQRNY---QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENS---CTHELIPEDDTSIQSLTVMPDGSMLAAANNK 188 (311)
T ss_pred cccchhc---cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCc---cccccCCCCCcceeeEEEcCCCcEEEEecCC
Confidence 7654444 567999999999999999999999999999998875 2333325566789999999999999999999
Q ss_pred CeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeee
Q 016982 166 GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAF 245 (379)
Q Consensus 166 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 245 (379)
|.+++|++-. .+. ...-+++..++.|.+.+....+|||+++|++++.|.+++||+..+.-.....+++
T Consensus 189 G~cyvW~l~~-----~~~-------~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~g 256 (311)
T KOG0315|consen 189 GNCYVWRLLN-----HQT-------ASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTG 256 (311)
T ss_pred ccEEEEEccC-----CCc-------cccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeec
Confidence 9999999732 111 1234566778999999999999999999999999999999998887445577888
Q ss_pred ecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCC
Q 016982 246 RDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETG 279 (379)
Q Consensus 246 ~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~ 279 (379)
|+..++.++||.||+||+ ++.|..+++|+....+
T Consensus 257 h~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 257 HQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGK 291 (311)
T ss_pred CCceEEeeeeccCccEEEecCCCCceeecccccCc
Confidence 999999999999999998 6788899999987654
No 21
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-38 Score=270.53 Aligned_cols=312 Identities=18% Similarity=0.197 Sum_probs=256.3
Q ss_pred CcceeEEEeCCCCcEEEEEecC-CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCce
Q 016982 10 AQCITCHAWSPDHAMVAFCPNN-NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEW 88 (379)
Q Consensus 10 ~~~i~~~~~s~~~~~l~~~~~d-g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~ 88 (379)
..+|..++|+..|..||.|+.. |.+.+|+.... ..+...++|...+++++++|||++|++|+.||+|+|||..++-|
T Consensus 307 ~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE--sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC 384 (893)
T KOG0291|consen 307 DQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE--SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFC 384 (893)
T ss_pred cceeeEEEecccCCEEEEcCCccceEEEEEeecc--ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceE
Confidence 4689999999999999999764 89999999987 67778899999999999999999999999999999999999987
Q ss_pred eeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCC-e
Q 016982 89 VPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDG-K 167 (379)
Q Consensus 89 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~-~ 167 (379)
..++ ..|+..|+.+.|+..|+.+++.+-||+|+.||+....+ .+.+....+-...|++..|.|..+..|+.|. .
T Consensus 385 ~vTF--teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN---fRTft~P~p~QfscvavD~sGelV~AG~~d~F~ 459 (893)
T KOG0291|consen 385 FVTF--TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN---FRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFE 459 (893)
T ss_pred EEEe--ccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce---eeeecCCCceeeeEEEEcCCCCEEEeeccceEE
Confidence 6665 78999999999999999999999999999999988774 5555345566778999999999999888776 5
Q ss_pred EEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeec
Q 016982 168 CRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRD 247 (379)
Q Consensus 168 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 247 (379)
|.+|++ ++++.+-.+.+|.++|.+++|+|++..|+++|.|.+|++||+-.....+.++. +.
T Consensus 460 IfvWS~------------------qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~ 520 (893)
T KOG0291|consen 460 IFVWSV------------------QTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IR 520 (893)
T ss_pred EEEEEe------------------ecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-ec
Confidence 999997 89999999999999999999999999999999999999999987755556665 56
Q ss_pred CCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccc
Q 016982 248 LPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESS 326 (379)
Q Consensus 248 ~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (379)
..+..++|+|+|+-|+ +..||.+.+|+..+......+ +....... .+.. . +..
T Consensus 521 sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~I---dgrkD~~~------------gR~~-~----------D~~ 574 (893)
T KOG0291|consen 521 SDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSI---DGRKDLSG------------GRKE-T----------DRI 574 (893)
T ss_pred cceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccc---cchhhccc------------cccc-c----------cee
Confidence 7899999999999888 678999999998765422111 11110000 0000 0 000
Q ss_pred cccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCccccccCC
Q 016982 327 RTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDLLNYH 378 (379)
Q Consensus 327 ~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~~~~~ 378 (379)
.+.-.+.....+.++ ++.|| .+|++||....|++|++.++-.++++.
T Consensus 575 ta~~sa~~K~Ftti~-ySaDG----~~IlAgG~sn~iCiY~v~~~vllkkfq 621 (893)
T KOG0291|consen 575 TAENSAKGKTFTTIC-YSADG----KCILAGGESNSICIYDVPEGVLLKKFQ 621 (893)
T ss_pred ehhhcccCCceEEEE-EcCCC----CEEEecCCcccEEEEECchhheeeeEE
Confidence 011123456789999 88887 899999999999999999998888764
No 22
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.1e-40 Score=269.58 Aligned_cols=288 Identities=16% Similarity=0.236 Sum_probs=240.4
Q ss_pred cceeccCcceeEEEeCC-CCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 016982 4 IAVHQFAQCITCHAWSP-DHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWN 82 (379)
Q Consensus 4 ~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~ 82 (379)
..+.+|...|+++.|.| .+.+|++++.|+.|+||++... ..+++++.+|..+|.+++|+++|..+++++.|+.|++||
T Consensus 208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~-~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwD 286 (503)
T KOG0282|consen 208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD-RRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWD 286 (503)
T ss_pred eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecC-cceehhhhcchhhhhhhhccccCCeeeeeecceeeeeec
Confidence 46789999999999999 8899999999999999999873 389999999999999999999999999999999999999
Q ss_pred ccCCceeeeEEeecCCCceeEEEECCCC-CEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEE
Q 016982 83 QEGSEWVPTLVILRLNRAALCVQWSPKE-NKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLAT 161 (379)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~ 161 (379)
+++|++...+. ....++++.|+|++ +.+++|+.|+.|+.||++.++ +.+.+ ..|-+.|..+.|-++|+++++
T Consensus 287 tETG~~~~~f~---~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k---vvqeY-d~hLg~i~~i~F~~~g~rFis 359 (503)
T KOG0282|consen 287 TETGQVLSRFH---LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK---VVQEY-DRHLGAILDITFVDEGRRFIS 359 (503)
T ss_pred cccceEEEEEe---cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH---HHHHH-HhhhhheeeeEEccCCceEee
Confidence 99999777764 36788999999988 899999999999999999988 55666 788899999999999999999
Q ss_pred eeCCCeEEEEeccccccccccccCCCccCCcccceEEEe-ecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCc--
Q 016982 162 TSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL-DLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSP-- 238 (379)
Q Consensus 162 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~-- 238 (379)
.+.|+.++||+. .....++.+ ..+.....++..+|++.+++.-+.|+.|.++.+...-+
T Consensus 360 sSDdks~riWe~------------------~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~n 421 (503)
T KOG0282|consen 360 SSDDKSVRIWEN------------------RIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLN 421 (503)
T ss_pred eccCccEEEEEc------------------CCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccC
Confidence 999999999985 223333222 22233467899999999999999999999998654322
Q ss_pred eeeeeeeecC--CeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeecccc
Q 016982 239 LAQNVAFRDL--PLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSK 315 (379)
Q Consensus 239 ~~~~~~~~~~--~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (379)
..+.+.+|.. --..+.|||||++|+ +..||.+.+|+.+......
T Consensus 422 kkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~--------------------------------- 468 (503)
T KOG0282|consen 422 KKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVS--------------------------------- 468 (503)
T ss_pred HhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhh---------------------------------
Confidence 2245566643 356789999999999 5578999999955443222
Q ss_pred ccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEe
Q 016982 316 YGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWD 367 (379)
Q Consensus 316 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~ 367 (379)
.+.+|.+.+..+.|++... ..+||||.||.|++|+
T Consensus 469 -------------~lkah~~~ci~v~wHP~e~----Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 469 -------------KLKAHDQPCIGVDWHPVEP----SKVATCGWDGLIKIWD 503 (503)
T ss_pred -------------ccccCCcceEEEEecCCCc----ceeEecccCceeEecC
Confidence 3368999999999776655 7999999999999997
No 23
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.3e-39 Score=257.12 Aligned_cols=293 Identities=15% Similarity=0.172 Sum_probs=237.1
Q ss_pred cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCC-ceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 016982 4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQE-KWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWN 82 (379)
Q Consensus 4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~ 82 (379)
..++.|.+.|.-+.||++|++||+++.|.+..||++... ..+...++.+|..+|..+.||||.++|++|+.|..+.+||
T Consensus 218 qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwD 297 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWD 297 (519)
T ss_pred hhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeecc
Confidence 346789999999999999999999999999999998653 3677899999999999999999999999999999999999
Q ss_pred ccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEe
Q 016982 83 QEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATT 162 (379)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~ 162 (379)
+.++.....+. .++...+.+++|.|||..+++|+.|+.+..||++... ...-.......|.+++..+||+++++.
T Consensus 298 v~tgd~~~~y~-~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~----~~~W~gvr~~~v~dlait~Dgk~vl~v 372 (519)
T KOG0293|consen 298 VDTGDLRHLYP-SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI----LGNWEGVRDPKVHDLAITYDGKYVLLV 372 (519)
T ss_pred CCcchhhhhcc-cCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch----hhcccccccceeEEEEEcCCCcEEEEE
Confidence 99998665553 3356789999999999999999999999999998765 122212233568999999999999999
Q ss_pred eCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeee
Q 016982 163 STDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQN 242 (379)
Q Consensus 163 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 242 (379)
+.|..+++++. .+......+ ....+|+++..|.+++++++.-.+..+++||+.... +++.
T Consensus 373 ~~d~~i~l~~~------------------e~~~dr~li-se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~-lv~k 432 (519)
T KOG0293|consen 373 TVDKKIRLYNR------------------EARVDRGLI-SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENK-LVRK 432 (519)
T ss_pred ecccceeeech------------------hhhhhhccc-cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhh-HHHH
Confidence 99999999986 222222222 225679999999999999999999999999999655 5567
Q ss_pred eeeecCC--eeeEEEec-CCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccC
Q 016982 243 VAFRDLP--LRDVLFVS-EKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGV 318 (379)
Q Consensus 243 ~~~~~~~--i~~~~~s~-~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (379)
+.+|... +..-+|.- +..+++ ++.|+.++||....+....
T Consensus 433 Y~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~------------------------------------ 476 (519)
T KOG0293|consen 433 YFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLA------------------------------------ 476 (519)
T ss_pred hhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeE------------------------------------
Confidence 7777543 44556654 457888 5578899999876654322
Q ss_pred cccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCc
Q 016982 319 GNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQ 371 (379)
Q Consensus 319 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~ 371 (379)
.+.||...|++|+ ++|.. | ..|||||+||+||||.....
T Consensus 477 ----------~LsGHs~~vNcVs-wNP~~-p--~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 477 ----------VLSGHSKTVNCVS-WNPAD-P--EMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred ----------eecCCcceeeEEe-cCCCC-H--HHhhccCCCCeEEEecCCcc
Confidence 4479999999999 55543 2 89999999999999988653
No 24
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.4e-39 Score=278.25 Aligned_cols=207 Identities=21% Similarity=0.330 Sum_probs=194.7
Q ss_pred cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982 4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ 83 (379)
Q Consensus 4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~ 83 (379)
.++.+|.++|+.+.|+|+.++|++++.|++|++|.+.+. ..+-.+.+|..||..+.|+|.|-++||++.|++-++|..
T Consensus 445 ~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~--s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~ 522 (707)
T KOG0263|consen 445 RTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW--SCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWST 522 (707)
T ss_pred EEeecCCCceeeeeecccccceeeccCCcceeeeecccc--eeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeec
Confidence 358999999999999999999999999999999999986 788888899999999999999999999999999999999
Q ss_pred cCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee
Q 016982 84 EGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS 163 (379)
Q Consensus 84 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 163 (379)
......+.+ .+|-+.|.|+.|+|+.+++++|+.|.+|++||..++. ..+.+ .+|.++|.+++|+|+|++|++|+
T Consensus 523 d~~~PlRif--aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~---~VRiF-~GH~~~V~al~~Sp~Gr~LaSg~ 596 (707)
T KOG0263|consen 523 DHNKPLRIF--AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN---SVRIF-TGHKGPVTALAFSPCGRYLASGD 596 (707)
T ss_pred ccCCchhhh--cccccccceEEECCcccccccCCCCceEEEEEcCCCc---EEEEe-cCCCCceEEEEEcCCCceEeecc
Confidence 888766665 7899999999999999999999999999999999998 56777 99999999999999999999999
Q ss_pred CCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Q 016982 164 TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGP 236 (379)
Q Consensus 164 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~ 236 (379)
.|+.|++||+ ..+..+..+.+|.+.|.++.|+.+|..||+++.|.+|++||+...
T Consensus 597 ed~~I~iWDl------------------~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 597 EDGLIKIWDL------------------ANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cCCcEEEEEc------------------CCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 9999999997 778999999999999999999999999999999999999997653
No 25
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=5.4e-38 Score=245.52 Aligned_cols=307 Identities=13% Similarity=0.100 Sum_probs=244.7
Q ss_pred cccceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEE
Q 016982 2 AAIAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVW 81 (379)
Q Consensus 2 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw 81 (379)
+...+..|.+.|.+++.+|+.+++|+|+.|..-.+|++.++ +....+.+|...|+++.|+.+|.+||||+.+|.|+||
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~g--e~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTG--EFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVF 133 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCC--cceeEecCCCCceEEEEEccCceEEEecCCCccEEEE
Confidence 56678999999999999999999999999999999999998 5888899999999999999999999999999999999
Q ss_pred eccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEE
Q 016982 82 NQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLAT 161 (379)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~ 161 (379)
...++.....+ ...-..+.=+.|+|.+..|+.|+.||.+-+|.+.... ..+.+ .+|..++++=.|.|+|+.+++
T Consensus 134 ~~stg~~~~~~--~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~---~~kv~-~Gh~~~ct~G~f~pdGKr~~t 207 (399)
T KOG0296|consen 134 KVSTGGEQWKL--DQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA---LCKVM-SGHNSPCTCGEFIPDGKRILT 207 (399)
T ss_pred EcccCceEEEe--ecccCceEEEEecccccEEEeecCCCcEEEEECCCcc---eeeEe-cCCCCCcccccccCCCceEEE
Confidence 99999755544 3455778889999999999999999999999998864 46777 899999999999999999999
Q ss_pred eeCCCeEEEEeccccccccccc-----cCCCcc--------------------CCcccceEEEee--------cCCcceE
Q 016982 162 TSTDGKCRVFSTFIKGVDIKEK-----KEGTSS--------------------DTKFGEQILQLD--------LSFSWAF 208 (379)
Q Consensus 162 ~~~d~~i~v~d~~~~~~~~~~~-----~~~~~~--------------------~~~~~~~~~~~~--------~~~~~v~ 208 (379)
+..||+|++||++......+.. ..+... ...+++.+.... .+...+.
T Consensus 208 gy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~e 287 (399)
T KOG0296|consen 208 GYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDE 287 (399)
T ss_pred EecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhh
Confidence 9999999999987543222221 000000 011222222222 1222233
Q ss_pred EEEECC---CCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEEEE
Q 016982 209 GVKWSP---SGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIK 285 (379)
Q Consensus 209 ~~~~sp---~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~~~ 285 (379)
++.+.| .-.+.|+|+-||+|.|||+..... +..-.|..+|..+.|.++..+++++.++.++.|+...+.+..
T Consensus 288 sve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~--R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~--- 362 (399)
T KOG0296|consen 288 SVESIPSSSKLPLAACGSVDGTIAIYDLAASTL--RHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKF--- 362 (399)
T ss_pred hhhhcccccccchhhcccccceEEEEecccchh--heeccCCCceEEEEEcCcchheeeccCceEEeeeccccceEE---
Confidence 444444 456778899999999999887652 444568889999999996667779999999999977654211
Q ss_pred EecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEE
Q 016982 286 FLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVT 365 (379)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~i 365 (379)
.+.||...|.+++ .+++. ++++|+|.|++.+|
T Consensus 363 -------------------------------------------~y~GH~~~Il~f~-ls~~~----~~vvT~s~D~~a~V 394 (399)
T KOG0296|consen 363 -------------------------------------------TYTGHQMGILDFA-LSPQK----RLVVTVSDDNTALV 394 (399)
T ss_pred -------------------------------------------EEecCchheeEEE-EcCCC----cEEEEecCCCeEEE
Confidence 2369999999999 77665 99999999999999
Q ss_pred EeCC
Q 016982 366 WDLE 369 (379)
Q Consensus 366 W~~~ 369 (379)
+++.
T Consensus 395 F~v~ 398 (399)
T KOG0296|consen 395 FEVP 398 (399)
T ss_pred EecC
Confidence 9874
No 26
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.2e-38 Score=274.82 Aligned_cols=284 Identities=21% Similarity=0.275 Sum_probs=236.5
Q ss_pred CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc-CCce
Q 016982 10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE-GSEW 88 (379)
Q Consensus 10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~-~~~~ 88 (379)
...|+++.|+|+|+.+++++.++.+++|+..+.+......+.+|...|.+++|+|+++++++++.|++|++||+. .+..
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~ 238 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRN 238 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeE
Confidence 789999999999999999999999999999665212667778999999999999999999999999999999994 4454
Q ss_pred eeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeE
Q 016982 89 VPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKC 168 (379)
Q Consensus 89 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i 168 (379)
...+ .+|...|++++|+|+++.+++|+.|++|++||++++. +.+.+ .+|.+.|.+++|++++++|++++.|+.|
T Consensus 239 ~~~l--~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~---~~~~l-~~hs~~is~~~f~~d~~~l~s~s~d~~i 312 (456)
T KOG0266|consen 239 LKTL--KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE---CVRKL-KGHSDGISGLAFSPDGNLLVSASYDGTI 312 (456)
T ss_pred EEEe--cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe---EEEee-eccCCceEEEEECCCCCEEEEcCCCccE
Confidence 4544 6899999999999999999999999999999999976 57777 8999999999999999999999999999
Q ss_pred EEEeccccccccccccCCCccCCcccc--eEEEeecCCc--ceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeee
Q 016982 169 RVFSTFIKGVDIKEKKEGTSSDTKFGE--QILQLDLSFS--WAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVA 244 (379)
Q Consensus 169 ~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~ 244 (379)
++||+ .++. ++..+..+.. +++.+.|+|++.+++++..|+.+++||+...... ....
T Consensus 313 ~vwd~------------------~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~-~~~~ 373 (456)
T KOG0266|consen 313 RVWDL------------------ETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV-GTYT 373 (456)
T ss_pred EEEEC------------------CCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcce-eeec
Confidence 99997 4555 4566655544 4999999999999999999999999999987643 5666
Q ss_pred eecC---CeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcc
Q 016982 245 FRDL---PLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGN 320 (379)
Q Consensus 245 ~~~~---~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (379)
+|.. .+.+...++.++++. ++.|+.+.+|+........
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~-------------------------------------- 415 (456)
T KOG0266|consen 374 GHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQ-------------------------------------- 415 (456)
T ss_pred ccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhh--------------------------------------
Confidence 6655 344555677888887 6678899999876532111
Q ss_pred ccccccccccccc-ccceeeeeeecccCCcccceEEEee--cCceEEEEeCC
Q 016982 321 DAVESSRTRGGTH-VNCINCIVPLREAGSSRITRFTTSG--LDGKIVTWDLE 369 (379)
Q Consensus 321 ~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~l~t~~--~Dg~v~iW~~~ 369 (379)
.+.+| ...|..+. +.+.. +++++++ .|+.+++|...
T Consensus 416 --------~l~~h~~~~~~~~~-~~~~~----~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 416 --------RLEGHSKAAVSDLS-SHPTE----NLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred --------hhcCCCCCceeccc-cCCCc----CeeeecCcCCCceEEEecCC
Confidence 23578 77888888 54443 8999998 79999999864
No 27
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2e-37 Score=235.48 Aligned_cols=261 Identities=18% Similarity=0.201 Sum_probs=223.7
Q ss_pred EEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEE
Q 016982 45 EKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCI 124 (379)
Q Consensus 45 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i 124 (379)
+..++|++|.+.|.++.|++|.++|++++.||.+.|||.-+...+..+. -....|..++|+|.|+++|+|+-|+...|
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haip--l~s~WVMtCA~sPSg~~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIP--LPSSWVMTCAYSPSGNFVACGGLDNKCSI 123 (343)
T ss_pred eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEe--cCceeEEEEEECCCCCeEEecCcCceeEE
Confidence 4558899999999999999999999999999999999998876555443 35688999999999999999999999999
Q ss_pred EEeecCCc---eeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEee
Q 016982 125 CYYEQENN---WWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD 201 (379)
Q Consensus 125 ~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (379)
|++.+... ..+.+.+ .+|.+.+.|+.|-+ +..|+|++.|.++.+||+ ++++.+..|.
T Consensus 124 y~ls~~d~~g~~~v~r~l-~gHtgylScC~f~d-D~~ilT~SGD~TCalWDi------------------e~g~~~~~f~ 183 (343)
T KOG0286|consen 124 YPLSTRDAEGNVRVSREL-AGHTGYLSCCRFLD-DNHILTGSGDMTCALWDI------------------ETGQQTQVFH 183 (343)
T ss_pred Eecccccccccceeeeee-cCccceeEEEEEcC-CCceEecCCCceEEEEEc------------------ccceEEEEec
Confidence 99986632 2345566 89999999999987 567899999999999998 8899999999
Q ss_pred cCCcceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCC
Q 016982 202 LSFSWAFGVKWSP-SGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETG 279 (379)
Q Consensus 202 ~~~~~v~~~~~sp-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~ 279 (379)
+|.+.|.+++++| +++.+++|+.|+..++||++.+. +.+.+.+|...|+++.|.|+|.-++ ++.|+..++|++....
T Consensus 184 GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~-c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~ 262 (343)
T KOG0286|consen 184 GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ-CVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQ 262 (343)
T ss_pred CCcccEEEEecCCCCCCeEEecccccceeeeeccCcc-eeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCc
Confidence 9999999999999 99999999999999999999985 6799999999999999999999888 5567789999988765
Q ss_pred cEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeec
Q 016982 280 IWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGL 359 (379)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~ 359 (379)
...+.. ...-..+|++++ |+..| ++|..|..
T Consensus 263 ~~a~ys--------------------------------------------~~~~~~gitSv~-FS~SG----RlLfagy~ 293 (343)
T KOG0286|consen 263 ELAVYS--------------------------------------------HDSIICGITSVA-FSKSG----RLLFAGYD 293 (343)
T ss_pred EEeeec--------------------------------------------cCcccCCceeEE-Ecccc----cEEEeeec
Confidence 333211 012344799999 88877 99999999
Q ss_pred CceEEEEeCCCccccccC
Q 016982 360 DGKIVTWDLESQEDLLNY 377 (379)
Q Consensus 360 Dg~v~iW~~~~~~~~~~~ 377 (379)
|..+.+||.-.++....|
T Consensus 294 d~~c~vWDtlk~e~vg~L 311 (343)
T KOG0286|consen 294 DFTCNVWDTLKGERVGVL 311 (343)
T ss_pred CCceeEeeccccceEEEe
Confidence 999999999887765443
No 28
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=1.1e-38 Score=244.64 Aligned_cols=295 Identities=13% Similarity=0.157 Sum_probs=237.2
Q ss_pred ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecC----------------CceEEEEEeccCCCceEEEEEcCCCCE
Q 016982 5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQ----------------EKWEKLHVLQKHDQIVSGIDWSVRSNR 68 (379)
Q Consensus 5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~ 68 (379)
.+..|++++.+.+|||||.++|+|+.|..|+|.|++. .....++++..|..+|+++.|+|....
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~I 186 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETI 186 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhhe
Confidence 3577999999999999999999999999999999861 013567889999999999999999999
Q ss_pred EEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEE
Q 016982 69 IVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVT 148 (379)
Q Consensus 69 l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~ 148 (379)
|++++.|++|+++|+.....++.+.......+|.+++|+|.|.+|++|.....+++||+++-+......+- ..|.+.|+
T Consensus 187 LiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd-~qht~ai~ 265 (430)
T KOG0640|consen 187 LISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPD-DQHTGAIT 265 (430)
T ss_pred EEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcc-ccccccee
Confidence 99999999999999987655555554556789999999999999999999999999999987643323332 68999999
Q ss_pred EEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEee-cCC-cceEEEEECCCCCEEEEEcCCC
Q 016982 149 SVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD-LSF-SWAFGVKWSPSGNTLAYVGHNS 226 (379)
Q Consensus 149 ~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~v~~~~~sp~~~~l~~~~~d~ 226 (379)
++.+++.+++.++++.||.|++||- -+++|+.++. .|. ..|.+..|..+|+++++.+.|.
T Consensus 266 ~V~Ys~t~~lYvTaSkDG~IklwDG------------------VS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS 327 (430)
T KOG0640|consen 266 QVRYSSTGSLYVTASKDGAIKLWDG------------------VSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDS 327 (430)
T ss_pred EEEecCCccEEEEeccCCcEEeecc------------------ccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcc
Confidence 9999999999999999999999994 6778888873 443 4799999999999999999999
Q ss_pred eEEEEECCCCCceeeeeeeec-----CCeeeEEEecCCcEEEEEeC--CCeEEEEecCCCcEEEEEEecccccCCCCCcc
Q 016982 227 MIYFVDDVGPSPLAQNVAFRD-----LPLRDVLFVSEKMVIGVGFD--CNPMVFAADETGIWTFIKFLDERKTSSSGPKY 299 (379)
Q Consensus 227 ~i~v~d~~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~~~~d--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (379)
.+++|.+.++..+ +...+.+ .--+...|.....++..-.+ +.+.-|+..+.....+
T Consensus 328 ~vkLWEi~t~R~l-~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l---------------- 390 (430)
T KOG0640|consen 328 TVKLWEISTGRML-KEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVAL---------------- 390 (430)
T ss_pred eeeeeeecCCceE-EEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhh----------------
Confidence 9999999998754 5554432 11344567766666664333 3455555443321111
Q ss_pred CCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCC
Q 016982 300 GSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLE 369 (379)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~ 369 (379)
...||.+.+..+. ++|.+ .-|+|||.|.++|+|--+
T Consensus 391 -----------------------------~slgHn~a~R~i~-HSP~~----p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 391 -----------------------------LSLGHNGAVRWIV-HSPVE----PAFMTCSDDFRARFWYRR 426 (430)
T ss_pred -----------------------------cccCCCCCceEEE-eCCCC----Cceeeecccceeeeeeec
Confidence 1158999999999 98776 899999999999999754
No 29
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.4e-36 Score=256.94 Aligned_cols=332 Identities=14% Similarity=0.155 Sum_probs=263.2
Q ss_pred cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982 4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ 83 (379)
Q Consensus 4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~ 83 (379)
.+..+|-+.|+++.|+.|.++|++|+.|-.+++|.++..+.-....+.+|.++|-++-|..+...+++.+.||.+.+|..
T Consensus 139 r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~ 218 (893)
T KOG0291|consen 139 RTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTC 218 (893)
T ss_pred eeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEe
Confidence 34678899999999999999999999999999999987644557889999999999999999999999999999999987
Q ss_pred cC------------------------Cc------e--eeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCC
Q 016982 84 EG------------------------SE------W--VPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQEN 131 (379)
Q Consensus 84 ~~------------------------~~------~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~ 131 (379)
.. .+ + .....+......+++.+|++..+.|+++-..|...+|.+..-.
T Consensus 219 ~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~ 298 (893)
T KOG0291|consen 219 DLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFN 298 (893)
T ss_pred cCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCce
Confidence 61 11 0 0011122233789999999999999999999999999887765
Q ss_pred ceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCC-CeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEE
Q 016982 132 NWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTD-GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGV 210 (379)
Q Consensus 132 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 210 (379)
+...+ .-...+|..++|+..|.+|+.|+.. |.+.||+- ++...+...++|...++++
T Consensus 299 ---lih~L-Sis~~~I~t~~~N~tGDWiA~g~~klgQLlVweW------------------qsEsYVlKQQgH~~~i~~l 356 (893)
T KOG0291|consen 299 ---LIHSL-SISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEW------------------QSESYVLKQQGHSDRITSL 356 (893)
T ss_pred ---EEEEe-ecccceeeEEEecccCCEEEEcCCccceEEEEEe------------------eccceeeeccccccceeeE
Confidence 55555 5556789999999999999998864 89999985 6677788889999999999
Q ss_pred EECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecc
Q 016982 211 KWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDE 289 (379)
Q Consensus 211 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~ 289 (379)
+++|||+++++|+.||.|+|||...+. +..++..|...|+.+.|+..|+.+. ++-||+++.|++.....++....+..
T Consensus 357 ~YSpDgq~iaTG~eDgKVKvWn~~Sgf-C~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p 435 (893)
T KOG0291|consen 357 AYSPDGQLIATGAEDGKVKVWNTQSGF-CFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEP 435 (893)
T ss_pred EECCCCcEEEeccCCCcEEEEeccCce-EEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCc
Confidence 999999999999999999999998877 6688899999999999999998776 78899999999887654443332222
Q ss_pred cccC-----CCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEE
Q 016982 290 RKTS-----SSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIV 364 (379)
Q Consensus 290 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~ 364 (379)
.+.. ..+...-.+....+..|.|.-+.|. ...++.||+++|.+++ |++++ ..|||+|+|.+||
T Consensus 436 ~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq-------llDiLsGHEgPVs~l~-f~~~~----~~LaS~SWDkTVR 503 (893)
T KOG0291|consen 436 IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ-------LLDILSGHEGPVSGLS-FSPDG----SLLASGSWDKTVR 503 (893)
T ss_pred eeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe-------eeehhcCCCCcceeeE-Ecccc----CeEEeccccceEE
Confidence 2111 1111111122234445554444443 3337799999999999 88776 8999999999999
Q ss_pred EEeCCC
Q 016982 365 TWDLES 370 (379)
Q Consensus 365 iW~~~~ 370 (379)
+||+-+
T Consensus 504 iW~if~ 509 (893)
T KOG0291|consen 504 IWDIFS 509 (893)
T ss_pred EEEeec
Confidence 999965
No 30
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=3.8e-36 Score=282.23 Aligned_cols=299 Identities=13% Similarity=0.106 Sum_probs=231.2
Q ss_pred ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCc------eEEEEEeccCCCceEEEEEcCC-CCEEEEEeCCCe
Q 016982 5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEK------WEKLHVLQKHDQIVSGIDWSVR-SNRIVTVSHDRN 77 (379)
Q Consensus 5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~------~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~ 77 (379)
.+..|.+.|++++|+|+|++||+|+.|+.|+||+..... ..+...+. +...+.+++|+|. +.+|++++.|++
T Consensus 478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~ 556 (793)
T PLN00181 478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGV 556 (793)
T ss_pred cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCe
Confidence 355689999999999999999999999999999975310 01222333 3457899999875 689999999999
Q ss_pred EEEEeccCCceeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEc-CC
Q 016982 78 SYVWNQEGSEWVPTLVILRLNRAALCVQWSP-KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWH-PN 155 (379)
Q Consensus 78 i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~ 155 (379)
|++||+.+++....+ ..|...|++++|+| ++.+|++|+.|+.|++||++.+. ....+ . +...+.++.|+ ++
T Consensus 557 v~lWd~~~~~~~~~~--~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~---~~~~~-~-~~~~v~~v~~~~~~ 629 (793)
T PLN00181 557 VQVWDVARSQLVTEM--KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV---SIGTI-K-TKANICCVQFPSES 629 (793)
T ss_pred EEEEECCCCeEEEEe--cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc---EEEEE-e-cCCCeEEEEEeCCC
Confidence 999999988755544 67999999999997 78999999999999999998776 34444 3 34678999995 46
Q ss_pred CcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCC
Q 016982 156 NVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVG 235 (379)
Q Consensus 156 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~ 235 (379)
+.+|++|+.|+.|++||+. .....+..+.+|...|.++.|. ++.+|++++.|+.|++||+..
T Consensus 630 g~~latgs~dg~I~iwD~~-----------------~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~ 691 (793)
T PLN00181 630 GRSLAFGSADHKVYYYDLR-----------------NPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSM 691 (793)
T ss_pred CCEEEEEeCCCeEEEEECC-----------------CCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCC
Confidence 8999999999999999972 2223456777899999999997 678999999999999999875
Q ss_pred C-----CceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCC-cEEEEEEecccccCCCCCccCCCcccccc
Q 016982 236 P-----SPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETG-IWTFIKFLDERKTSSSGPKYGSQFSEAFG 308 (379)
Q Consensus 236 ~-----~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (379)
. ...+..+.+|...+..++|++++.+|+ ++.|+.+.+|+..... .+.... .... ..
T Consensus 692 ~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~--~~~~-~~-------------- 754 (793)
T PLN00181 692 SISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKF--KTID-PV-------------- 754 (793)
T ss_pred CccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEec--ccCC-cc--------------
Confidence 3 234577888989999999999999888 5578999999865432 111100 0000 00
Q ss_pred eeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeC
Q 016982 309 KLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDL 368 (379)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~ 368 (379)
.......|...|.+++ |++++ .+|++|+.||.|+||++
T Consensus 755 -----------------~~~~~~~~~~~V~~v~-ws~~~----~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 755 -----------------SGLEVDDASQFISSVC-WRGQS----STLVAANSTGNIKILEM 792 (793)
T ss_pred -----------------cccccCCCCcEEEEEE-EcCCC----CeEEEecCCCcEEEEec
Confidence 0001134677899999 66665 89999999999999997
No 31
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.8e-39 Score=251.56 Aligned_cols=283 Identities=17% Similarity=0.222 Sum_probs=236.4
Q ss_pred CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCcee
Q 016982 10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWV 89 (379)
Q Consensus 10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~ 89 (379)
...|+|+.+. ...+++|..|++|+|||..+- .+...+.+|++.|.|+.|. .+.|++|+.|.+|++||+++++++
T Consensus 197 skgVYClQYD--D~kiVSGlrDnTikiWD~n~~--~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l 270 (499)
T KOG0281|consen 197 SKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSL--ECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPL 270 (499)
T ss_pred CCceEEEEec--chhhhcccccCceEEeccccH--HHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchh
Confidence 4679999984 567999999999999998875 7889999999999999996 569999999999999999999977
Q ss_pred eeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEE
Q 016982 90 PTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCR 169 (379)
Q Consensus 90 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~ 169 (379)
..+ ..|...|..+.|+ ..++++++.|.++.+||+.......+.+.+ .+|...|+.+.| +.+++++++.|.+|+
T Consensus 271 ~tl--ihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVL-vGHrAaVNvVdf--d~kyIVsASgDRTik 343 (499)
T KOG0281|consen 271 NTL--IHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVL-VGHRAAVNVVDF--DDKYIVSASGDRTIK 343 (499)
T ss_pred hHH--hhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHH-hhhhhheeeecc--ccceEEEecCCceEE
Confidence 766 6799999999998 569999999999999999887644444555 899999999999 567999999999999
Q ss_pred EEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCC
Q 016982 170 VFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLP 249 (379)
Q Consensus 170 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 249 (379)
+|++ .+.+.+.++.+|...|.++.+. ++++++|+.|.+|++||+..+. +++.+++|+.-
T Consensus 344 vW~~------------------st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~-cLRvLeGHEeL 402 (499)
T KOG0281|consen 344 VWST------------------STCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGA-CLRVLEGHEEL 402 (499)
T ss_pred EEec------------------cceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccH-HHHHHhchHHh
Confidence 9997 7899999999999999998875 8999999999999999999887 56899999999
Q ss_pred eeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCccccccccccc
Q 016982 250 LRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTR 329 (379)
Q Consensus 250 i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (379)
|.++.|. +.+++.+++||++++|++...- ++..... .+. ...
T Consensus 403 vRciRFd-~krIVSGaYDGkikvWdl~aal--------dpra~~~-----------~~C------------------l~~ 444 (499)
T KOG0281|consen 403 VRCIRFD-NKRIVSGAYDGKIKVWDLQAAL--------DPRAPAS-----------TLC------------------LRT 444 (499)
T ss_pred hhheeec-CceeeeccccceEEEEeccccc--------CCccccc-----------chH------------------HHh
Confidence 9999995 3456668999999998865421 1110000 000 013
Q ss_pred ccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCc
Q 016982 330 GGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQ 371 (379)
Q Consensus 330 ~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~ 371 (379)
+..|++.|..+. |. ...+++++.|-+|.|||+.++
T Consensus 445 lv~hsgRVFrLQ-FD------~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 445 LVEHSGRVFRLQ-FD------EFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred hhhccceeEEEe-ec------ceEEEeccCCCeEEEEEcCCC
Confidence 356999999998 53 268999999999999999864
No 32
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-36 Score=227.80 Aligned_cols=306 Identities=17% Similarity=0.216 Sum_probs=241.8
Q ss_pred CcccceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEE
Q 016982 1 MAAIAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYV 80 (379)
Q Consensus 1 m~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v 80 (379)
|.+..+++|+.+++-+.++.+|.+|++++.|....+|-..++ +.+-++.+|.+.|.++..+-+.+++++|+.|.++++
T Consensus 1 mrpi~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG--erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kL 78 (327)
T KOG0643|consen 1 MRPILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG--ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKL 78 (327)
T ss_pred CCccccccCccccceEEecCCCcEEEEecCCCCceEEEecCC--ceeeeecCCCceEEEEEecCCcceeeeccccceeEE
Confidence 667789999999999999999999999999999999988777 899999999999999999999999999999999999
Q ss_pred EeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeC-----CCeEEEEEeecCC----ceeEEEEEeecCCcCEEEEE
Q 016982 81 WNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSG-----AKTVCICYYEQEN----NWWVSKLIRKRHDSSVTSVA 151 (379)
Q Consensus 81 w~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~v~i~~~~~~~----~~~~~~~~~~~~~~~v~~~~ 151 (379)
||+++++.+..+. ...+|..+.|+++|++++.+.. .+.|.++|++... .......+ ..+...++.+-
T Consensus 79 WDv~tGk~la~~k---~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI-~t~~skit~a~ 154 (327)
T KOG0643|consen 79 WDVETGKQLATWK---TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKI-PTPDSKITSAL 154 (327)
T ss_pred EEcCCCcEEEEee---cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEe-cCCccceeeee
Confidence 9999999666653 5789999999999998888765 4678999988443 11112233 46678899999
Q ss_pred EcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCccc-ceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEE
Q 016982 152 WHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFG-EQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYF 230 (379)
Q Consensus 152 ~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v 230 (379)
|.|-++.|++|.++|.|.+||+ +++ +.+...+.|...|+.+.++||..++++++.|.+-++
T Consensus 155 Wg~l~~~ii~Ghe~G~is~~da------------------~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl 216 (327)
T KOG0643|consen 155 WGPLGETIIAGHEDGSISIYDA------------------RTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKL 216 (327)
T ss_pred ecccCCEEEEecCCCcEEEEEc------------------ccCceeeechhhhccccccccccCCcceEEecccCcccee
Confidence 9999999999999999999997 554 555666888899999999999999999999999999
Q ss_pred EECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEecC--CCcEEEEEEecccccCCCCCccCCCcccccc
Q 016982 231 VDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADE--TGIWTFIKFLDERKTSSSGPKYGSQFSEAFG 308 (379)
Q Consensus 231 ~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (379)
||+.+-. +++++. ...||++.+++|....++.+.....+=..... .+.++ .
T Consensus 217 ~D~~tl~-v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFE-------------------------A 269 (327)
T KOG0643|consen 217 VDVRTLE-VLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFE-------------------------A 269 (327)
T ss_pred eecccee-eEEEee-ecccccceecccccceEEecCCceeeeeeeecccccchh-------------------------h
Confidence 9998865 445554 47899999999976666643322221111100 01000 1
Q ss_pred eeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCC
Q 016982 309 KLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLES 370 (379)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~ 370 (379)
+|+ ....++.-...+||-++|++|+ |.|+| .-.+|||+||.||+.-+..
T Consensus 270 rFy--------h~i~eEEigrvkGHFGPINsvA-fhPdG----ksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 270 RFY--------HLIFEEEIGRVKGHFGPINSVA-FHPDG----KSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred hHH--------HHHHHHHhccccccccCcceeE-ECCCC----cccccCCCCceEEEEEecc
Confidence 111 0111233335589999999999 66665 8999999999999987765
No 33
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.8e-36 Score=227.90 Aligned_cols=242 Identities=20% Similarity=0.353 Sum_probs=207.6
Q ss_pred ccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCC-
Q 016982 8 QFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGS- 86 (379)
Q Consensus 8 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~- 86 (379)
+|+..|..++|+|.|++||+|+.|.++.||.-..++++++.++++|...|.+++|+++|++||+++.|+.|-+|.+..+
T Consensus 59 ~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd 138 (312)
T KOG0645|consen 59 GHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD 138 (312)
T ss_pred cchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC
Confidence 5889999999999999999999999999999999999999999999999999999999999999999999999998744
Q ss_pred ceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCC
Q 016982 87 EWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDG 166 (379)
Q Consensus 87 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~ 166 (379)
+....-.+.+|...|..+.|+|...+|++++.|.+|++|.-.....|.+...+ .+|...|.+++|+|.|..|++++.|+
T Consensus 139 Efec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl-~g~~~TVW~~~F~~~G~rl~s~sdD~ 217 (312)
T KOG0645|consen 139 EFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTL-DGHENTVWSLAFDNIGSRLVSCSDDG 217 (312)
T ss_pred cEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEe-cCccceEEEEEecCCCceEEEecCCc
Confidence 34444455889999999999999999999999999999988767778888888 89999999999999999999999999
Q ss_pred eEEEEeccccccccccccCCCccCCcccceEEEe-ecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCC--c----e
Q 016982 167 KCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL-DLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPS--P----L 239 (379)
Q Consensus 167 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~--~----~ 239 (379)
+++||.. . ..+ ..|...+..+.|. ...|++++.|+.|++|...... + +
T Consensus 218 tv~Iw~~------------------~-----~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~ 272 (312)
T KOG0645|consen 218 TVSIWRL------------------Y-----TDLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLL 272 (312)
T ss_pred ceEeeee------------------c-----cCcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHH
Confidence 9999964 1 111 2356778899998 4579999999999999754321 1 1
Q ss_pred eeeeeeecCCeeeEEEec--CCcEEEEEeCCCeEEEEe
Q 016982 240 AQNVAFRDLPLRDVLFVS--EKMVIGVGFDCNPMVFAA 275 (379)
Q Consensus 240 ~~~~~~~~~~i~~~~~s~--~~~~l~~~~d~~~~i~~~ 275 (379)
...-..|+..|+++.|.| .++++.++.||.+++|.+
T Consensus 273 ~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 273 AKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred HhhhcccccccceEEEcCCCCCceeecCCCceEEEEEe
Confidence 123346888999999999 456666888999999875
No 34
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.9e-37 Score=260.53 Aligned_cols=293 Identities=16% Similarity=0.154 Sum_probs=245.3
Q ss_pred ceeccCcceeEEEe-CCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982 5 AVHQFAQCITCHAW-SPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ 83 (379)
Q Consensus 5 ~~~~~~~~i~~~~~-s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~ 83 (379)
.+.+..+.|..++| .|+.++||++++.+.+++|++.+. .-..+.+|+..|.++....+|.+|+||+.|.++++|.+
T Consensus 318 ~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~---~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~ 394 (775)
T KOG0319|consen 318 QIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTS---YCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRL 394 (775)
T ss_pred hhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCC---ceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEe
Confidence 45677889999988 578899999999999999998886 23388999999999996677889999999999999988
Q ss_pred cCCc--eeeeEEeecCCCceeEEEECCCC-CEEEEEeCCCeEEEEEeecCCceeEEEE-----EeecCCcCEEEEEEcCC
Q 016982 84 EGSE--WVPTLVILRLNRAALCVQWSPKE-NKFAVGSGAKTVCICYYEQENNWWVSKL-----IRKRHDSSVTSVAWHPN 155 (379)
Q Consensus 84 ~~~~--~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~p~ 155 (379)
+.+. ........+|...|.+++++..+ .+|++++.|+++++|++...++...... ....|...|++++.+|+
T Consensus 395 ~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~n 474 (775)
T KOG0319|consen 395 NNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPN 474 (775)
T ss_pred cCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCC
Confidence 5442 22223346799999999997744 6899999999999999987332111111 12579999999999999
Q ss_pred CcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCC
Q 016982 156 NVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVG 235 (379)
Q Consensus 156 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~ 235 (379)
.++++||+.|.+.+||++ +.......+.+|...|+++.|+|..+.++++|.|++|+||.+.+
T Consensus 475 dkLiAT~SqDktaKiW~l------------------e~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~ 536 (775)
T KOG0319|consen 475 DKLIATGSQDKTAKIWDL------------------EQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST 536 (775)
T ss_pred CceEEecccccceeeecc------------------cCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEecc
Confidence 999999999999999997 56788899999999999999999999999999999999999998
Q ss_pred CCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccc
Q 016982 236 PSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQS 314 (379)
Q Consensus 236 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (379)
.. +++++.+|...|..+.|-.+|+.|+ ++.||-+++|+.....+..
T Consensus 537 fS-ClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~-------------------------------- 583 (775)
T KOG0319|consen 537 FS-CLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEM-------------------------------- 583 (775)
T ss_pred ce-eeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhh--------------------------------
Confidence 76 6799999999999999999876555 8899999999987653222
Q ss_pred cccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCC
Q 016982 315 KYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLES 370 (379)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~ 370 (379)
.+.+|.+.|++++ .++.. ..++|||.||.|.+|.=.+
T Consensus 584 --------------tlD~H~DrvWaL~-~~~~~----~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 584 --------------TLDAHNDRVWALS-VSPLL----DMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred --------------hhhhccceeEEEe-ecCcc----ceeEecCCCeEEEEeecCc
Confidence 3468999999999 66555 7999999999999997554
No 35
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.6e-37 Score=242.42 Aligned_cols=257 Identities=18% Similarity=0.187 Sum_probs=227.7
Q ss_pred eEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEE
Q 016982 44 WEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVC 123 (379)
Q Consensus 44 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~ 123 (379)
++..+.+.+|.+.|.|+++.|.++++++++.|++++|||+.++++...+ .+|...|..+++++...++++++.|+.|+
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltl--tGhi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTL--TGHIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEee--cchhheeeeeeecccCceEEEecCCCeeE
Confidence 5667788999999999999999999999999999999999999966555 78999999999999999999999999999
Q ss_pred EEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecC
Q 016982 124 ICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS 203 (379)
Q Consensus 124 i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (379)
.||++.++ +.+.+ .+|-..|.|++.+|.-..|++|+.|..++|||+ ++...+..+.+|
T Consensus 219 CwDLe~nk---vIR~Y-hGHlS~V~~L~lhPTldvl~t~grDst~RvWDi------------------Rtr~~V~~l~GH 276 (460)
T KOG0285|consen 219 CWDLEYNK---VIRHY-HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDI------------------RTRASVHVLSGH 276 (460)
T ss_pred EEechhhh---hHHHh-ccccceeEEEeccccceeEEecCCcceEEEeee------------------cccceEEEecCC
Confidence 99999988 56776 899999999999999999999999999999997 788899999999
Q ss_pred CcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEE
Q 016982 204 FSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTF 283 (379)
Q Consensus 204 ~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~ 283 (379)
..+|.++.+.|-...+++|+.|++|++||++.++.. ..+..|...+.+++.+|....+|+++.+.+.-|....+....
T Consensus 277 ~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~-~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~- 354 (460)
T KOG0285|consen 277 TNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTM-ITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQ- 354 (460)
T ss_pred CCcceeEEeecCCCceEEecCCceEEEeeeccCcee-EeeecccceeeEEecCCchhhhhccCCccceeccCCccchhh-
Confidence 999999999997778999999999999999998854 777789999999999999999998888888877765432110
Q ss_pred EEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceE
Q 016982 284 IKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKI 363 (379)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v 363 (379)
.+.+|...|++++ ...|+ ++++|++.|.+
T Consensus 355 ---------------------------------------------nlsgh~~iintl~-~nsD~-----v~~~G~dng~~ 383 (460)
T KOG0285|consen 355 ---------------------------------------------NLSGHNAIINTLS-VNSDG-----VLVSGGDNGSI 383 (460)
T ss_pred ---------------------------------------------ccccccceeeeee-eccCc-----eEEEcCCceEE
Confidence 2368999999999 55554 89999999999
Q ss_pred EEEeCCCccccccC
Q 016982 364 VTWDLESQEDLLNY 377 (379)
Q Consensus 364 ~iW~~~~~~~~~~~ 377 (379)
.+||.+++-..|.+
T Consensus 384 ~fwdwksg~nyQ~~ 397 (460)
T KOG0285|consen 384 MFWDWKSGHNYQRG 397 (460)
T ss_pred EEEecCcCcccccc
Confidence 99999998776654
No 36
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.1e-38 Score=252.76 Aligned_cols=245 Identities=15% Similarity=0.238 Sum_probs=217.1
Q ss_pred ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCC-CceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982 5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHD-QIVSGIDWSVRSNRIVTVSHDRNSYVWNQ 83 (379)
Q Consensus 5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~vw~~ 83 (379)
.++.|.++|+++.|+++|.++++|..+|.|++|+..-+ .+..++.|. ..|++++|+|+...+++++.||+|+|||.
T Consensus 133 ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn---nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf 209 (464)
T KOG0284|consen 133 ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN---NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDF 209 (464)
T ss_pred HhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh---hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEec
Confidence 45789999999999999999999999999999998764 445555554 89999999999999999999999999999
Q ss_pred cCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee
Q 016982 84 EGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS 163 (379)
Q Consensus 84 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 163 (379)
...+....+ .+|.-.|.+++|+|...++++++.|..|++||.+++. +...+ ..|...|..+.|+|++++|++++
T Consensus 210 ~~~kee~vL--~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~---cl~tl-h~HKntVl~~~f~~n~N~Llt~s 283 (464)
T KOG0284|consen 210 RMPKEERVL--RGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS---CLATL-HGHKNTVLAVKFNPNGNWLLTGS 283 (464)
T ss_pred cCCchhhee--ccCCCCcceeccCCccceeEEccCCceeEeecCCCcc---hhhhh-hhccceEEEEEEcCCCCeeEEcc
Confidence 887755555 7899999999999999999999999999999999988 45555 78999999999999999999999
Q ss_pred CCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCceeee
Q 016982 164 TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSP-SGNTLAYVGHNSMIYFVDDVGPSPLAQN 242 (379)
Q Consensus 164 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 242 (379)
.|..++++|+ ++.+.+..+++|...++++.|+| ...+|.+|+.||.|..|.+...+++...
T Consensus 284 kD~~~kv~Di------------------R~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i 345 (464)
T KOG0284|consen 284 KDQSCKVFDI------------------RTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEI 345 (464)
T ss_pred CCceEEEEeh------------------hHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCC
Confidence 9999999998 56777888999999999999999 6778889999999999998866666555
Q ss_pred eeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEec
Q 016982 243 VAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAAD 276 (379)
Q Consensus 243 ~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~ 276 (379)
-.+|...|++++|+|=|.+|+ ++.|.++++|...
T Consensus 346 ~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 346 PPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred CcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 667899999999999999999 5578889999754
No 37
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.2e-35 Score=240.40 Aligned_cols=293 Identities=20% Similarity=0.301 Sum_probs=238.0
Q ss_pred cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC----CeEE
Q 016982 4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD----RNSY 79 (379)
Q Consensus 4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~ 79 (379)
..+.+|..+++-..|||.|.++|+|...|+|+|||....+.-+..+++.-.++|..++|++++++|+..++. |.+.
T Consensus 53 ~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F 132 (603)
T KOG0318|consen 53 DIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVF 132 (603)
T ss_pred eeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEE
Confidence 446789999999999999999999999999999999886666777788888999999999999999877643 3466
Q ss_pred EEeccCCceeeeEEeecCCCceeEEEECCCC-CEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcE
Q 016982 80 VWNQEGSEWVPTLVILRLNRAALCVQWSPKE-NKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVF 158 (379)
Q Consensus 80 vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 158 (379)
+||. +..... +.+|...|.++.|-|.. -.+++|++|++|.+|+= .+......+ ..|..-|.|+.|+|||.+
T Consensus 133 ~~DS--G~SvGe--i~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeG---PPFKFk~s~-r~HskFV~~VRysPDG~~ 204 (603)
T KOG0318|consen 133 LWDS--GNSVGE--ITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEG---PPFKFKSSF-REHSKFVNCVRYSPDGSR 204 (603)
T ss_pred EecC--CCccce--eeccceeEeeeeccCCCceEEEeccCCCeEEEeeC---CCeeeeecc-cccccceeeEEECCCCCe
Confidence 6664 443344 47899999999999954 47999999999998753 222234444 788999999999999999
Q ss_pred EEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEee---cCCcceEEEEECCCCCEEEEEcCCCeEEEEECCC
Q 016982 159 LATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD---LSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVG 235 (379)
Q Consensus 159 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~ 235 (379)
+++.+.||++.+||- .+++.+..+. +|.+.|.+++|+||+..+++++.|.+++|||+.+
T Consensus 205 Fat~gsDgki~iyDG------------------ktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~ 266 (603)
T KOG0318|consen 205 FATAGSDGKIYIYDG------------------KTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVST 266 (603)
T ss_pred EEEecCCccEEEEcC------------------CCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeec
Confidence 999999999999994 8899999987 8999999999999999999999999999999988
Q ss_pred CCceeeeeeeec---CCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeec
Q 016982 236 PSPLAQNVAFRD---LPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYG 312 (379)
Q Consensus 236 ~~~~~~~~~~~~---~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (379)
.+ +++++.... .....+.|. .+.++..+.+|.+.+++.+.....+
T Consensus 267 ~s-lv~t~~~~~~v~dqqvG~lWq-kd~lItVSl~G~in~ln~~d~~~~~------------------------------ 314 (603)
T KOG0318|consen 267 NS-LVSTWPMGSTVEDQQVGCLWQ-KDHLITVSLSGTINYLNPSDPSVLK------------------------------ 314 (603)
T ss_pred cc-eEEEeecCCchhceEEEEEEe-CCeEEEEEcCcEEEEecccCCChhh------------------------------
Confidence 75 556655322 223456665 6678888889988887765432111
Q ss_pred cccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCccccc
Q 016982 313 QSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDLL 375 (379)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~~ 375 (379)
.+.||...|+++. .++++ .+|.||+.||.|.-|+..++..-+
T Consensus 315 ----------------~i~GHnK~ITaLt-v~~d~----~~i~SgsyDG~I~~W~~~~g~~~~ 356 (603)
T KOG0318|consen 315 ----------------VISGHNKSITALT-VSPDG----KTIYSGSYDGHINSWDSGSGTSDR 356 (603)
T ss_pred ----------------eecccccceeEEE-EcCCC----CEEEeeccCceEEEEecCCccccc
Confidence 3369999999999 66665 899999999999999998876543
No 38
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.1e-35 Score=248.82 Aligned_cols=291 Identities=15% Similarity=0.164 Sum_probs=244.3
Q ss_pred ccceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 016982 3 AIAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWN 82 (379)
Q Consensus 3 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~ 82 (379)
..++.+|...|.++++|.+...+++|+. +.+++|+..+. ++++++.. +.+.+..|-|.++++++|...|.+.++|
T Consensus 366 ~i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~--kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfd 440 (888)
T KOG0306|consen 366 NIEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTL--KCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFD 440 (888)
T ss_pred eeeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCc--ceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEE
Confidence 3567899999999999999888888754 79999999986 78888874 3889999999999999999999999999
Q ss_pred ccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCc--eeEEEEEe------ecCCcCEEEEEEcC
Q 016982 83 QEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENN--WWVSKLIR------KRHDSSVTSVAWHP 154 (379)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~--~~~~~~~~------~~~~~~v~~~~~~p 154 (379)
+.+...+..+ ..|.+.+++++.+||+..+++|+.|.+|++||+..... ....+.+. -.-...|.|++++|
T Consensus 441 laS~~l~Eti--~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp 518 (888)
T KOG0306|consen 441 LASASLVETI--RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP 518 (888)
T ss_pred eehhhhhhhh--hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC
Confidence 9998866665 58999999999999999999999999999999864321 00111111 24467899999999
Q ss_pred CCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECC
Q 016982 155 NNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDV 234 (379)
Q Consensus 155 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~ 234 (379)
|+++|+++--|.+++||-+ .+-+-..++.+|.-+|.++..|||++++++||.|..|++|-+.
T Consensus 519 dgk~LaVsLLdnTVkVyfl------------------DtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLd 580 (888)
T KOG0306|consen 519 DGKLLAVSLLDNTVKVYFL------------------DTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLD 580 (888)
T ss_pred CCcEEEEEeccCeEEEEEe------------------cceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccc
Confidence 9999999999999999986 5677778899999999999999999999999999999999887
Q ss_pred CCCceeeeeeeecCCeeeEEEecCCcEE-EEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeecc
Q 016982 235 GPSPLAQNVAFRDLPLRDVLFVSEKMVI-GVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQ 313 (379)
Q Consensus 235 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (379)
-+. +.+.+-+|+..|.++.|.|+..++ ++|.|+.++-|+... +....
T Consensus 581 FGD-CHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k---Fe~iq---------------------------- 628 (888)
T KOG0306|consen 581 FGD-CHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK---FEEIQ---------------------------- 628 (888)
T ss_pred cch-hhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhh---hhhhe----------------------------
Confidence 765 457888899999999999976644 588999999887432 11111
Q ss_pred ccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCC
Q 016982 314 SKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLES 370 (379)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~ 370 (379)
.+.+|...|+|++ ..++| .+++|+|.|.+||+|....
T Consensus 629 ---------------~L~~H~~ev~cLa-v~~~G----~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 629 ---------------KLDGHHSEVWCLA-VSPNG----SFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred ---------------eeccchheeeeeE-EcCCC----CeEEeccCCceeEeeeccC
Confidence 3468999999999 55554 8999999999999998755
No 39
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.9e-36 Score=235.72 Aligned_cols=244 Identities=15% Similarity=0.224 Sum_probs=221.4
Q ss_pred ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982 5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE 84 (379)
Q Consensus 5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~ 84 (379)
.+.+|.+.|..++|+..|++||+++.|=.+++||..+. .+++..+.+|...|.++.|-|.|.+|++++.|.+|+.|++.
T Consensus 145 ~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~-~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~ 223 (406)
T KOG0295|consen 145 SLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF-FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECD 223 (406)
T ss_pred hhhccccceeEEEEecCccEEEecCCccchhheeHHHH-HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecc
Confidence 57899999999999999999999999988999999875 46778888999999999999999999999999999999999
Q ss_pred CCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCC---------
Q 016982 85 GSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPN--------- 155 (379)
Q Consensus 85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--------- 155 (379)
++.++..+ .+|...|.-++.+.||..+++++.|.++++|-+.+++ +...+ ..|..+|.+++|.|.
T Consensus 224 tg~cv~t~--~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~---~k~~l-R~hEh~vEci~wap~~~~~~i~~a 297 (406)
T KOG0295|consen 224 TGYCVKTF--PGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQ---CKAEL-REHEHPVECIAWAPESSYPSISEA 297 (406)
T ss_pred cceeEEec--cCchHhEEEEEecCCeeEEEecCCCceEEEEEeccch---hhhhh-hccccceEEEEecccccCcchhhc
Confidence 99977766 7899999999999999999999999999999999886 34444 789999999999873
Q ss_pred ------CcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEE
Q 016982 156 ------NVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIY 229 (379)
Q Consensus 156 ------~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~ 229 (379)
++++.+++.|++|++||+ .++.++.++.+|..+|..++|+|.|+||+++..|++++
T Consensus 298 t~~~~~~~~l~s~SrDktIk~wdv------------------~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlr 359 (406)
T KOG0295|consen 298 TGSTNGGQVLGSGSRDKTIKIWDV------------------STGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLR 359 (406)
T ss_pred cCCCCCccEEEeecccceEEEEec------------------cCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEE
Confidence 258999999999999997 88999999999999999999999999999999999999
Q ss_pred EEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEE
Q 016982 230 FVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFA 274 (379)
Q Consensus 230 v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~ 274 (379)
+||+++.. +.+.+..|..-++++.|..+..+++ ++-|..+++|.
T Consensus 360 vwdl~~~~-cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 360 VWDLKNLQ-CMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred EEEeccce-eeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 99998876 5688889999999999999888877 55688888876
No 40
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-35 Score=220.84 Aligned_cols=283 Identities=16% Similarity=0.250 Sum_probs=223.9
Q ss_pred eeEEEeCC-CCcEEEEEe-------cCCeEEEEEecC-CceEEEEEeccCCCceEEEEEcCCC-CEEEEEeCCCeEEEEe
Q 016982 13 ITCHAWSP-DHAMVAFCP-------NNNEVHIYKLIQ-EKWEKLHVLQKHDQIVSGIDWSVRS-NRIVTVSHDRNSYVWN 82 (379)
Q Consensus 13 i~~~~~s~-~~~~l~~~~-------~dg~i~i~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~vw~ 82 (379)
=+++.||| -.++||++. ..|++.|.++.. +.......+. -.+.+..++|+++. +.+++++.||++++||
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d 89 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFD 89 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeee-cccceeEeeecCCCcceEEEEecCceEEEec
Confidence 36789999 234444432 368999999963 3344444444 35678999999975 6788999999999999
Q ss_pred ccCCceeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCC-CcEEE
Q 016982 83 QEGSEWVPTLVILRLNRAALCVQWSP-KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPN-NVFLA 160 (379)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~ 160 (379)
+.... .+....++|+..|.++.|++ +...+++++.|++|++|+.+.++ ....+ .+|..-|...+|+|. .+.++
T Consensus 90 ~~~~s-~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~---Sv~Tf-~gh~~~Iy~a~~sp~~~nlfa 164 (311)
T KOG0277|consen 90 LTMPS-KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN---SVQTF-NGHNSCIYQAAFSPHIPNLFA 164 (311)
T ss_pred cCCCC-cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc---ceEee-cCCccEEEEEecCCCCCCeEE
Confidence 65443 34455588999999999999 56678888999999999988777 35556 899999999999995 58999
Q ss_pred EeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCce
Q 016982 161 TTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSP-SGNTLAYVGHNSMIYFVDDVGPSPL 239 (379)
Q Consensus 161 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~i~v~d~~~~~~~ 239 (379)
+++.|+.+++||++ ..++.+. +..|...+.++.|+. +.+.|++|+.|+.|++||+++-+..
T Consensus 165 s~Sgd~~l~lwdvr-----------------~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~p 226 (311)
T KOG0277|consen 165 SASGDGTLRLWDVR-----------------SPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTP 226 (311)
T ss_pred EccCCceEEEEEec-----------------CCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhcccc
Confidence 99999999999982 4455544 889999999999998 6778999999999999999998888
Q ss_pred eeeeeeecCCeeeEEEecCC-cEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeecccccc
Q 016982 240 AQNVAFRDLPLRDVLFVSEK-MVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYG 317 (379)
Q Consensus 240 ~~~~~~~~~~i~~~~~s~~~-~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (379)
+..+.+|+..|..+.|||.. .+|+ +++|-++++|+..... ... .
T Consensus 227 l~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d--s~~-----------------------e--------- 272 (311)
T KOG0277|consen 227 LFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD--SAI-----------------------E--------- 272 (311)
T ss_pred ceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch--hhh-----------------------h---------
Confidence 88999999999999999964 4666 7899999999865321 000 1
Q ss_pred CcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeC
Q 016982 318 VGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDL 368 (379)
Q Consensus 318 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~ 368 (379)
...-|+.-|..+. ++.-. +.++|++|.|+.++||+-
T Consensus 273 -----------~~~~HtEFv~g~D-ws~~~---~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 273 -----------TVDHHTEFVCGLD-WSLFD---PGQVASTGWDELLYVWNP 308 (311)
T ss_pred -----------hhhccceEEeccc-ccccc---Cceeeecccccceeeecc
Confidence 1135888899999 54432 389999999999999983
No 41
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=5.8e-35 Score=229.70 Aligned_cols=287 Identities=15% Similarity=0.156 Sum_probs=233.1
Q ss_pred eeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCC---CEEEEEeCCCeEEEEe
Q 016982 6 VHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRS---NRIVTVSHDRNSYVWN 82 (379)
Q Consensus 6 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~vw~ 82 (379)
-+.|.+.|.++... ++.+++|++||.+++||... +...++.+|.++|.+++|.-.. ..+++++.|.++++|.
T Consensus 101 ~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~G---k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~ 175 (423)
T KOG0313|consen 101 CFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKG---KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWK 175 (423)
T ss_pred cccchhhhhhhccc--CceEEEeecCCeeEEEecCC---ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEE
Confidence 35688889988887 68999999999999999987 5888899999999988885333 4699999999999999
Q ss_pred ccCCceeeeE--EeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCc----------------------eeEEEE
Q 016982 83 QEGSEWVPTL--VILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENN----------------------WWVSKL 138 (379)
Q Consensus 83 ~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~----------------------~~~~~~ 138 (379)
++.++..... ...+|...|.+++..++|..+++|+.|..|.+|+...... ......
T Consensus 176 ~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vt 255 (423)
T KOG0313|consen 176 WNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVT 255 (423)
T ss_pred ecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEE
Confidence 9877533222 2248999999999999999999999999999999332110 011223
Q ss_pred EeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCE
Q 016982 139 IRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNT 218 (379)
Q Consensus 139 ~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 218 (379)
+ .+|..+|.++.|++ ...+.+++.|.+|+.||+ .++.++.++.. +..++++.++|..++
T Consensus 256 l-~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDl------------------etg~~~~~~~~-~ksl~~i~~~~~~~L 314 (423)
T KOG0313|consen 256 L-EGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDL------------------ETGGLKSTLTT-NKSLNCISYSPLSKL 314 (423)
T ss_pred e-cccccceeeEEEcC-CCceEeecccceEEEEEe------------------ecccceeeeec-CcceeEeecccccce
Confidence 3 79999999999997 678999999999999997 67787777765 567999999999999
Q ss_pred EEEEcCCCeEEEEECCCC--CceeeeeeeecCCeeeEEEecCCcEE--EEEeCCCeEEEEecCCCcEEEEEEecccccCC
Q 016982 219 LAYVGHNSMIYFVDDVGP--SPLAQNVAFRDLPLRDVLFVSEKMVI--GVGFDCNPMVFAADETGIWTFIKFLDERKTSS 294 (379)
Q Consensus 219 l~~~~~d~~i~v~d~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l--~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~ 294 (379)
|++|+.|..+++||.+++ ....+.+.+|.+.|.++.|+|...++ .+++|+.+++|+..... .
T Consensus 315 l~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k--~------------ 380 (423)
T KOG0313|consen 315 LASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK--A------------ 380 (423)
T ss_pred eeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC--C------------
Confidence 999999999999998875 33557788999999999999976543 37899999999876532 0
Q ss_pred CCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCC
Q 016982 295 SGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLE 369 (379)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~ 369 (379)
+.| .+.+|.+.|.++.|. ++.+|+|||.|.+|+|+.-.
T Consensus 381 --------------ply-----------------dI~~h~DKvl~vdW~------~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 381 --------------PLY-----------------DIAGHNDKVLSVDWN------EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred --------------cce-----------------eeccCCceEEEEecc------CCceEEeccCcceEEEeccc
Confidence 111 346899999999943 23589999999999998754
No 42
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.3e-35 Score=243.50 Aligned_cols=247 Identities=18% Similarity=0.160 Sum_probs=222.9
Q ss_pred ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982 5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE 84 (379)
Q Consensus 5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~ 84 (379)
++..+.+.|.++.|+|....++++-.+|.|.||+.++. ..+..+.-..-||.+..|-+..+.+++|+.|..|++|+.+
T Consensus 8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetq--tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn 85 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQ--TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYN 85 (794)
T ss_pred HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccc--eeeeeeeecccchhhheeeeccceEEEecCCceEEEEecc
Confidence 45668999999999999999999999999999999997 7888888888899999999999999999999999999999
Q ss_pred CCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCC-CcEEEEee
Q 016982 85 GSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPN-NVFLATTS 163 (379)
Q Consensus 85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~ 163 (379)
+.+.+..+ ..|...|++++.+|.-.++++++.|-.|++||++.. |.+.+.+ .+|...|.+++|+|. .+.+++++
T Consensus 86 t~ekV~~F--eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~--wa~~qtf-eGH~HyVMqv~fnPkD~ntFaS~s 160 (794)
T KOG0276|consen 86 TGEKVKTF--EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE--WACEQTF-EGHEHYVMQVAFNPKDPNTFASAS 160 (794)
T ss_pred cceeeEEe--eccccceeeeeecCCCCeEEecCCccEEEEeeccCc--eeeeeEE-cCcceEEEEEEecCCCccceeeee
Confidence 99866665 789999999999999999999999999999999875 4466677 999999999999995 58999999
Q ss_pred CCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECC--CCCEEEEEcCCCeEEEEECCCCCceee
Q 016982 164 TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSP--SGNTLAYVGHNSMIYFVDDVGPSPLAQ 241 (379)
Q Consensus 164 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~~i~v~d~~~~~~~~~ 241 (379)
-|++|+||.+ .+..+..++++|...|+++.|-+ |..+|++|+.|.+++|||.++.. +++
T Consensus 161 LDrTVKVWsl------------------gs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~-CV~ 221 (794)
T KOG0276|consen 161 LDRTVKVWSL------------------GSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS-CVQ 221 (794)
T ss_pred ccccEEEEEc------------------CCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHH-HHH
Confidence 9999999997 55677889999999999999998 44699999999999999988855 779
Q ss_pred eeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecC
Q 016982 242 NVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADE 277 (379)
Q Consensus 242 ~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~ 277 (379)
++.+|...|..+.|+|.-.+++ ++.||++++|....
T Consensus 222 TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~T 258 (794)
T KOG0276|consen 222 TLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKT 258 (794)
T ss_pred HhhcccccceEEEecCCCcEEEEecCCccEEEecCcc
Confidence 9999999999999999988777 67899999998543
No 43
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-35 Score=220.69 Aligned_cols=263 Identities=18% Similarity=0.280 Sum_probs=221.8
Q ss_pred eeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCce-EEEEEeccCCCceEEEEEcC--CCCEEEEEeCCCeEEEEe
Q 016982 6 VHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKW-EKLHVLQKHDQIVSGIDWSV--RSNRIVTVSHDRNSYVWN 82 (379)
Q Consensus 6 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~-~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~vw~ 82 (379)
..+|++.|..+...-.|++||+++.|++|+|+...++.. .++.+|.+|.+||..++|.. .|.+|++++.||+|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 467899999999988999999999999999999987654 78899999999999999976 689999999999999999
Q ss_pred ccCCceeeeEEeecCCCceeEEEECCC--CCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCC---C-
Q 016982 83 QEGSEWVPTLVILRLNRAALCVQWSPK--ENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPN---N- 156 (379)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~- 156 (379)
-+++++........|...|++++|.|. |-.|++++.||.|.|.+++....+...+.. ..|.-.|++++|.|. |
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~-~aH~~GvnsVswapa~~~g~ 165 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIV-FAHEIGVNSVSWAPASAPGS 165 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhh-hccccccceeeecCcCCCcc
Confidence 999988777777889999999999995 678999999999999999887555445555 899999999999995 3
Q ss_pred ----------cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCC----CCEEEEE
Q 016982 157 ----------VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPS----GNTLAYV 222 (379)
Q Consensus 157 ----------~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~----~~~l~~~ 222 (379)
+.|++|+.|..|+||+.. ......-..+.+|.+.|+.++|.|. ..+++++
T Consensus 166 ~~~~~~~~~~krlvSgGcDn~VkiW~~~----------------~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~ 229 (299)
T KOG1332|consen 166 LVDQGPAAKVKRLVSGGCDNLVKIWKFD----------------SDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASC 229 (299)
T ss_pred ccccCcccccceeeccCCccceeeeecC----------------CcchhhhhhhhhcchhhhhhhhccccCCCceeeEEe
Confidence 579999999999999862 1123444558899999999999995 3579999
Q ss_pred cCCCeEEEEECCCCCc--eeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEE
Q 016982 223 GHNSMIYFVDDVGPSP--LAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIK 285 (379)
Q Consensus 223 ~~d~~i~v~d~~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~ 285 (379)
+.||++.||-...... ....+......++.+.||..|.+|+ ++.|+.+.+|..+..|.|..+.
T Consensus 230 SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw~~v~ 295 (299)
T KOG1332|consen 230 SQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKWEEVG 295 (299)
T ss_pred cCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCcEEEcc
Confidence 9999999997653311 1233334467799999999999999 6788899999999999998754
No 44
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.4e-34 Score=253.35 Aligned_cols=248 Identities=19% Similarity=0.262 Sum_probs=214.3
Q ss_pred ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982 5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE 84 (379)
Q Consensus 5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~ 84 (379)
.+.+|...|.+++|+|+++++++++.|++|+|||+... ...++++.+|...|++++|+|+++++++|+.|++|++||++
T Consensus 198 ~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~-~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~ 276 (456)
T KOG0266|consen 198 ELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD-GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVR 276 (456)
T ss_pred cccccccceeeeEECCCCcEEEEecCCceEEEeeccCC-CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEecc
Confidence 34689999999999999999999999999999999332 37889999999999999999999999999999999999999
Q ss_pred CCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCc--CEEEEEEcCCCcEEEEe
Q 016982 85 GSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDS--SVTSVAWHPNNVFLATT 162 (379)
Q Consensus 85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~p~~~~l~~~ 162 (379)
++++...+ ..|...|.+++|++++++|++++.|+.|++||+.++... +.+.+ ..+.. +++++.|+|++.+++++
T Consensus 277 ~~~~~~~l--~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~-~~~~~-~~~~~~~~~~~~~fsp~~~~ll~~ 352 (456)
T KOG0266|consen 277 TGECVRKL--KGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL-CLKLL-SGAENSAPVTSVQFSPNGKYLLSA 352 (456)
T ss_pred CCeEEEee--eccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee-eeecc-cCCCCCCceeEEEECCCCcEEEEe
Confidence 99877766 779999999999999999999999999999999988732 12333 34433 59999999999999999
Q ss_pred eCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCc---ceEEEEECCCCCEEEEEcCCCeEEEEECCCCCce
Q 016982 163 STDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFS---WAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPL 239 (379)
Q Consensus 163 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~ 239 (379)
+.|+.+++||+ ..+.+...+.+|.. .+.+...++.+.++++++.|+.|++||+.+.. .
T Consensus 353 ~~d~~~~~w~l------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~-~ 413 (456)
T KOG0266|consen 353 SLDRTLKLWDL------------------RSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGG-I 413 (456)
T ss_pred cCCCeEEEEEc------------------cCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccc-h
Confidence 99999999997 66777777777765 34556667899999999999999999998855 4
Q ss_pred eeeeeee-cCCeeeEEEecCCcEEEEE---eCCCeEEEEec
Q 016982 240 AQNVAFR-DLPLRDVLFVSEKMVIGVG---FDCNPMVFAAD 276 (379)
Q Consensus 240 ~~~~~~~-~~~i~~~~~s~~~~~l~~~---~d~~~~i~~~~ 276 (379)
++.+.+| ...+..+.++|...+++.+ .|+.+++|..+
T Consensus 414 ~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 414 LQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred hhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 5788888 8889999999999999854 48888888754
No 45
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=4.8e-36 Score=223.26 Aligned_cols=291 Identities=15% Similarity=0.223 Sum_probs=242.6
Q ss_pred ccceeccCcceeEEEeCC---CCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEE
Q 016982 3 AIAVHQFAQCITCHAWSP---DHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSY 79 (379)
Q Consensus 3 ~~~~~~~~~~i~~~~~s~---~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 79 (379)
+..-++|..+|-.++||| +|-+|++++.|+.-.+-+-+++ .-+-++.+|.+.|.+...+.+..+-++++.|-+-+
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tg--dwigtfeghkgavw~~~l~~na~~aasaaadftak 84 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTG--DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAK 84 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCC--CcEEeeeccCcceeeeecCchhhhhhhhcccchhh
Confidence 345689999999999986 8899999999999999888887 67889999999999999988888889999999999
Q ss_pred EEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEE
Q 016982 80 VWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFL 159 (379)
Q Consensus 80 vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l 159 (379)
+||.-++..+.. ..|+.-|.+++|+.|.++|++|+.++.+++||++..+. ....+ .+|.+.|..+-|....+.+
T Consensus 85 vw~a~tgdelhs---f~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~A--pp~E~-~ghtg~Ir~v~wc~eD~~i 158 (334)
T KOG0278|consen 85 VWDAVTGDELHS---FEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKA--PPKEI-SGHTGGIRTVLWCHEDKCI 158 (334)
T ss_pred hhhhhhhhhhhh---hhhhheeeeEEecccchhhhccchHHHhhhhhccCCCC--Cchhh-cCCCCcceeEEEeccCceE
Confidence 999999974444 46888999999999999999999999999999988763 23334 7999999999999988999
Q ss_pred EEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCce
Q 016982 160 ATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPL 239 (379)
Q Consensus 160 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~ 239 (379)
++.+.|++||+||. +++..++++.. +.+|+++.++++|++|.++ ..+.|.+||..+-..
T Consensus 159 LSSadd~tVRLWD~------------------rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~- 217 (334)
T KOG0278|consen 159 LSSADDKTVRLWDH------------------RTGTEVQSLEF-NSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGL- 217 (334)
T ss_pred EeeccCCceEEEEe------------------ccCcEEEEEec-CCCCcceeeccCCCEEEEe-cCceeEEeccccccc-
Confidence 99999999999997 78888888876 5679999999999988665 567899999887653
Q ss_pred eeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccC
Q 016982 240 AQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGV 318 (379)
Q Consensus 240 ~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (379)
++..+ ....|.+.+.+|+..+++ ++.|..++.|+++.+..... |
T Consensus 218 lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~--------------------------~-------- 262 (334)
T KOG0278|consen 218 LKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS--------------------------Y-------- 262 (334)
T ss_pred eeecc-CccccccccccCCCceEEecCcceEEEEEeccCCceeee--------------------------c--------
Confidence 35544 356688999999866554 66777788777765432211 1
Q ss_pred cccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCccc
Q 016982 319 GNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQED 373 (379)
Q Consensus 319 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~ 373 (379)
..||.++|.||. |+|+| ...|+||.||+||+|....++.
T Consensus 263 -----------nkgh~gpVhcVr-FSPdG----E~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 263 -----------NKGHFGPVHCVR-FSPDG----ELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred -----------ccCCCCceEEEE-ECCCC----ceeeccCCCceEEEEEecCCCc
Confidence 168999999999 88777 8999999999999999876543
No 46
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.7e-34 Score=212.07 Aligned_cols=246 Identities=12% Similarity=0.105 Sum_probs=209.4
Q ss_pred ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982 5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE 84 (379)
Q Consensus 5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~ 84 (379)
.+..+.++|.++.|+-||+|.++++.|.+|++|+...+ .+++++.+|...|..++.+.|+..|++|+.|+.+.+||+.
T Consensus 12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg--~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG--ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN 89 (307)
T ss_pred eecccccceEEEEEccCCCEEEEcCCCceEEeeccccc--ceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc
Confidence 45678999999999999999999999999999999887 8999999999999999999999999999999999999999
Q ss_pred CCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC
Q 016982 85 GSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST 164 (379)
Q Consensus 85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 164 (379)
+++..+.+ .+|.+.|..+.|+.+...+++|+.|.++++||.+..... ..+.+ ......|.++.. .+..+++|+.
T Consensus 90 TGkv~Rr~--rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~e-PiQil-dea~D~V~Si~v--~~heIvaGS~ 163 (307)
T KOG0316|consen 90 TGKVDRRF--RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFE-PIQIL-DEAKDGVSSIDV--AEHEIVAGSV 163 (307)
T ss_pred cCeeeeec--ccccceeeEEEecCcceEEEeccccceeEEEEcccCCCC-ccchh-hhhcCceeEEEe--cccEEEeecc
Confidence 99987776 789999999999999999999999999999999887633 24444 566788999888 4678999999
Q ss_pred CCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeee
Q 016982 165 DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVA 244 (379)
Q Consensus 165 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~ 244 (379)
||+++.||+ +.+......- ..+|+++.|+++++.++.++.|+++++.|-.+++ +++..+
T Consensus 164 DGtvRtydi------------------R~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGk-lL~sYk 222 (307)
T KOG0316|consen 164 DGTVRTYDI------------------RKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGK-LLKSYK 222 (307)
T ss_pred CCcEEEEEe------------------ecceeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhH-HHHHhc
Confidence 999999997 4555444333 4579999999999999999999999999988776 568888
Q ss_pred eecCCee--eEEEecCCcEEE-EEeCCCeEEEEecCCC
Q 016982 245 FRDLPLR--DVLFVSEKMVIG-VGFDCNPMVFAADETG 279 (379)
Q Consensus 245 ~~~~~i~--~~~~s~~~~~l~-~~~d~~~~i~~~~~~~ 279 (379)
+|...-+ ..+++.....++ ++.||.+++|++-+..
T Consensus 223 Ghkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 223 GHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDET 260 (307)
T ss_pred ccccceeeeeeeecccceeEEeccCCceEEEEEeccce
Confidence 8865533 345555455555 7789999999876653
No 47
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.8e-36 Score=231.72 Aligned_cols=285 Identities=15% Similarity=0.192 Sum_probs=236.9
Q ss_pred eccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEE------EEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEE
Q 016982 7 HQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEK------LHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYV 80 (379)
Q Consensus 7 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v 80 (379)
++..+-+.|..|||||++|++|+.||-|.+|+..+++.+. ...+.-+..+|.|+.|+.|...|++|+.||.|++
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV 289 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence 5567789999999999999999999999999998874322 2334457789999999999999999999999999
Q ss_pred EeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEE
Q 016982 81 WNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLA 160 (379)
Q Consensus 81 w~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 160 (379)
|.+.++.+.+.+. ..|...|+++.|+.|+..+++++.|.++++.-+..++ +.+.+ .+|...|+...|.++|.+++
T Consensus 290 Wri~tG~ClRrFd-rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK---~LKEf-rGHsSyvn~a~ft~dG~~ii 364 (508)
T KOG0275|consen 290 WRIETGQCLRRFD-RAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK---CLKEF-RGHSSYVNEATFTDDGHHII 364 (508)
T ss_pred EEEecchHHHHhh-hhhccCeeEEEEccCcchhhcccccceEEEeccccch---hHHHh-cCccccccceEEcCCCCeEE
Confidence 9999999988885 5799999999999999999999999999999998887 56777 89999999999999999999
Q ss_pred EeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecC--CcceEEEEECC-CCCEEEEEcCCCeEEEEECCCCC
Q 016982 161 TTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS--FSWAFGVKWSP-SGNTLAYVGHNSMIYFVDDVGPS 237 (379)
Q Consensus 161 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~sp-~~~~l~~~~~d~~i~v~d~~~~~ 237 (379)
+++.||+|++|+. ++.+|+.++... ..+|+++..-| +-..++++...++++|.++...
T Consensus 365 saSsDgtvkvW~~------------------KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ- 425 (508)
T KOG0275|consen 365 SASSDGTVKVWHG------------------KTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ- 425 (508)
T ss_pred EecCCccEEEecC------------------cchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce-
Confidence 9999999999996 788888888543 45788888888 5567888889999999998753
Q ss_pred ceeeeeee---ecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeecc
Q 016982 238 PLAQNVAF---RDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQ 313 (379)
Q Consensus 238 ~~~~~~~~---~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (379)
+++.+.. .++...+.+.||.|.++. .+.|+.++.|....++.-.
T Consensus 426 -vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~------------------------------- 473 (508)
T KOG0275|consen 426 -VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLER------------------------------- 473 (508)
T ss_pred -EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceee-------------------------------
Confidence 4455542 245566788999999887 6778777777755443211
Q ss_pred ccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEe
Q 016982 314 SKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWD 367 (379)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~ 367 (379)
.+.-|...|..++ +.|.. +.|||=++||.+++|.
T Consensus 474 ---------------tl~VhEkdvIGl~-HHPHq----NllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 474 ---------------TLPVHEKDVIGLT-HHPHQ----NLLASYSEDGLLKLWK 507 (508)
T ss_pred ---------------eeecccccccccc-cCccc----chhhhhcccchhhhcC
Confidence 2245888888999 66655 7999999999999996
No 48
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=6.5e-34 Score=213.14 Aligned_cols=246 Identities=15% Similarity=0.258 Sum_probs=206.7
Q ss_pred cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCC-CEEEEEeCCCeEEEEe
Q 016982 4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRS-NRIVTVSHDRNSYVWN 82 (379)
Q Consensus 4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~vw~ 82 (379)
..+.+|...|.+++|+.+|..|++|+.|+++.+|+++...........+|.+.|-.++|+|.. ..+++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 356788999999999999999999999999999999987555556678899999999999865 7899999999999999
Q ss_pred ccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEe
Q 016982 83 QEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATT 162 (379)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~ 162 (379)
+..+++...... ++.-.-+.|+|+|+++++++.|..|.+.|.++.+. ... ......+..++|+.++.+++..
T Consensus 94 ~r~~k~~~~i~~---~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~---~~~--~~~~~e~ne~~w~~~nd~Fflt 165 (313)
T KOG1407|consen 94 IRSGKCTARIET---KGENINITWSPDGEYIAVGNKDDRITFIDARTYKI---VNE--EQFKFEVNEISWNNSNDLFFLT 165 (313)
T ss_pred eccCcEEEEeec---cCcceEEEEcCCCCEEEEecCcccEEEEEecccce---eeh--hcccceeeeeeecCCCCEEEEe
Confidence 999987666543 45556789999999999999999999999887762 222 3455667889999888887777
Q ss_pred eCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeee
Q 016982 163 STDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQN 242 (379)
Q Consensus 163 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 242 (379)
+..|.|.|... +.-+++.+++.|.....++.|+|+|+++|+|+.|..+.+||+..-- +.+.
T Consensus 166 ~GlG~v~ILsy------------------psLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELi-C~R~ 226 (313)
T KOG1407|consen 166 NGLGCVEILSY------------------PSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELI-CERC 226 (313)
T ss_pred cCCceEEEEec------------------cccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhh-hhee
Confidence 77899999875 6788999999999999999999999999999999999999987754 4577
Q ss_pred eeeecCCeeeEEEecCCcEEEEEe-CCCeEEEEec
Q 016982 243 VAFRDLPLRDVLFVSEKMVIGVGF-DCNPMVFAAD 276 (379)
Q Consensus 243 ~~~~~~~i~~~~~s~~~~~l~~~~-d~~~~i~~~~ 276 (379)
+..+..||..++||.||++||+++ |..|-|-...
T Consensus 227 isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~ve 261 (313)
T KOG1407|consen 227 ISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVE 261 (313)
T ss_pred eccccCceEEEEeccCcceeeccCccceEEeEecc
Confidence 778899999999999999999655 4455454443
No 49
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.8e-34 Score=212.97 Aligned_cols=256 Identities=18% Similarity=0.230 Sum_probs=212.9
Q ss_pred EEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEE
Q 016982 45 EKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCI 124 (379)
Q Consensus 45 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i 124 (379)
+..+.+..+.++|.++.|+-+|++.++++.|.+|++|+...+.++..+ .+|...|..++.+.|+..+++|+.|+.+.+
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktY--sghG~EVlD~~~s~Dnskf~s~GgDk~v~v 85 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTY--SGHGHEVLDAALSSDNSKFASCGGDKAVQV 85 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeee--cCCCceeeeccccccccccccCCCCceEEE
Confidence 356778889999999999999999999999999999999999987776 789999999999999999999999999999
Q ss_pred EEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCC
Q 016982 125 CYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSF 204 (379)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (379)
||+++++ +.+.+ .+|.+.|+.++|+.+...+++|+.|..+++||.+ .+..++++.+....
T Consensus 86 wDV~TGk---v~Rr~-rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCR----------------S~s~ePiQildea~ 145 (307)
T KOG0316|consen 86 WDVNTGK---VDRRF-RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCR----------------SRSFEPIQILDEAK 145 (307)
T ss_pred EEcccCe---eeeec-ccccceeeEEEecCcceEEEeccccceeEEEEcc----------------cCCCCccchhhhhc
Confidence 9999998 67777 8999999999999999999999999999999984 35667888888778
Q ss_pred cceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEE-EEEeCCCeEEEEecCCCcEEE
Q 016982 205 SWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVI-GVGFDCNPMVFAADETGIWTF 283 (379)
Q Consensus 205 ~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~d~~~~i~~~~~~~~~~~ 283 (379)
..|.++..+ +..+++|+.||+++.||++.+.. .....+.||++++|++|++.+ +++-|..+++.+...+++.+
T Consensus 146 D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l---~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~- 219 (307)
T KOG0316|consen 146 DGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTL---SSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLK- 219 (307)
T ss_pred CceeEEEec--ccEEEeeccCCcEEEEEeeccee---ehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHH-
Confidence 889999887 56799999999999999998863 223346799999999999865 47778888887654433211
Q ss_pred EEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeee-ecccCCcccceEEEeecCce
Q 016982 284 IKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVP-LREAGSSRITRFTTSGLDGK 362 (379)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~~~~~~l~t~~~Dg~ 362 (379)
...||.+.=..+.. +.... ..+++||+||.
T Consensus 220 ---------------------------------------------sYkGhkn~eykldc~l~qsd----thV~sgSEDG~ 250 (307)
T KOG0316|consen 220 ---------------------------------------------SYKGHKNMEYKLDCCLNQSD----THVFSGSEDGK 250 (307)
T ss_pred ---------------------------------------------Hhcccccceeeeeeeecccc----eeEEeccCCce
Confidence 22577665544442 22222 68999999999
Q ss_pred EEEEeCCCccccccC
Q 016982 363 IVTWDLESQEDLLNY 377 (379)
Q Consensus 363 v~iW~~~~~~~~~~~ 377 (379)
|.+||+.+...+-++
T Consensus 251 Vy~wdLvd~~~~sk~ 265 (307)
T KOG0316|consen 251 VYFWDLVDETQISKL 265 (307)
T ss_pred EEEEEeccceeeeee
Confidence 999999987766544
No 50
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.2e-35 Score=248.83 Aligned_cols=252 Identities=16% Similarity=0.149 Sum_probs=220.1
Q ss_pred cccceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCC--ceEEEEEeccCCCceEEEEEcCCC-CEEEEEeCCCeE
Q 016982 2 AAIAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQE--KWEKLHVLQKHDQIVSGIDWSVRS-NRIVTVSHDRNS 78 (379)
Q Consensus 2 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i 78 (379)
....+.+|.+.|.+++...+|-+|++|+.|.++++|.++++ +..++....+|.+.|.+++++..+ .+|+++|.|.++
T Consensus 357 ~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tl 436 (775)
T KOG0319|consen 357 YCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTL 436 (775)
T ss_pred ceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceE
Confidence 44567899999999996667889999999999999998543 234566678999999999997766 689999999999
Q ss_pred EEEeccCCc-------eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEE
Q 016982 79 YVWNQEGSE-------WVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVA 151 (379)
Q Consensus 79 ~vw~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~ 151 (379)
++|++...+ .........|...|++++++|+.+++|+|+.|++.+||+++... +...+ .+|...|.++.
T Consensus 437 K~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~---l~~vL-sGH~RGvw~V~ 512 (775)
T KOG0319|consen 437 KLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR---LLGVL-SGHTRGVWCVS 512 (775)
T ss_pred EEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCce---EEEEe-eCCccceEEEE
Confidence 999997621 11111334688999999999999999999999999999999655 56667 89999999999
Q ss_pred EcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEE
Q 016982 152 WHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFV 231 (379)
Q Consensus 152 ~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~ 231 (379)
|+|.++.++|++.|++|+||.+ .+..|+++|.+|...|..+.|-.+|+.|++++.||.|++|
T Consensus 513 Fs~~dq~laT~SgD~TvKIW~i------------------s~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlW 574 (775)
T KOG0319|consen 513 FSKNDQLLATCSGDKTVKIWSI------------------STFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLW 574 (775)
T ss_pred eccccceeEeccCCceEEEEEe------------------ccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEE
Confidence 9999999999999999999998 7899999999999999999999999999999999999999
Q ss_pred ECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEec
Q 016982 232 DDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAAD 276 (379)
Q Consensus 232 d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~ 276 (379)
++.++. +..++..|+..|++++-+|.+.+++ ++.|+.+.+|...
T Consensus 575 nikt~e-C~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~ 619 (775)
T KOG0319|consen 575 NIKTNE-CEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDV 619 (775)
T ss_pred eccchh-hhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecC
Confidence 999876 6699999999999999999887666 6788899998754
No 51
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=1.2e-33 Score=226.01 Aligned_cols=285 Identities=15% Similarity=0.223 Sum_probs=236.8
Q ss_pred CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCcee
Q 016982 10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWV 89 (379)
Q Consensus 10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~ 89 (379)
...|+++...|....+++|+.|..+.++|...+ +.+.+++||...|+.+.++|+...+++++.|..|++|........
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~--q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSN--QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP 296 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchh--hhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCc
Confidence 356888888888789999999999999999987 788999999999999999999999999999999999998877633
Q ss_pred eeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEE
Q 016982 90 PTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCR 169 (379)
Q Consensus 90 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~ 169 (379)
.. ...|..+|+.+..+|.|.+|++++.|+...+.|++.+.. +.........-.+++.+|+|||..|.+|..|+.++
T Consensus 297 ~~--~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~--lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vk 372 (506)
T KOG0289|consen 297 TS--SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQ--LTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVK 372 (506)
T ss_pred cc--cccccccceeeeeccCCcEEEEecCCceEEEEEccCCcE--EEEEeeccccceeEEeeEcCCceEEeccCCCceEE
Confidence 33 367999999999999999999999999999999998874 22222112334689999999999999999999999
Q ss_pred EEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeee-ecC
Q 016982 170 VFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAF-RDL 248 (379)
Q Consensus 170 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~ 248 (379)
|||+ +....+..|.+|.++|..++|+.+|-+|++++.|+.|++||+++.+.. +++.. ...
T Consensus 373 iwdl------------------ks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~-kt~~l~~~~ 433 (506)
T KOG0289|consen 373 IWDL------------------KSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNF-KTIQLDEKK 433 (506)
T ss_pred EEEc------------------CCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhccc-ceeeccccc
Confidence 9997 566688899999999999999999999999999999999999987643 44443 235
Q ss_pred CeeeEEEecCCcEEEEEeCCCeEEEEec-CCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCccccccccc
Q 016982 249 PLRDVLFVSEKMVIGVGFDCNPMVFAAD-ETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSR 327 (379)
Q Consensus 249 ~i~~~~~s~~~~~l~~~~d~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (379)
++.++.|.+.|.+|+.+ ...+.+|... ..+.|......
T Consensus 434 ~v~s~~fD~SGt~L~~~-g~~l~Vy~~~k~~k~W~~~~~~---------------------------------------- 472 (506)
T KOG0289|consen 434 EVNSLSFDQSGTYLGIA-GSDLQVYICKKKTKSWTEIKEL---------------------------------------- 472 (506)
T ss_pred cceeEEEcCCCCeEEee-cceeEEEEEecccccceeeehh----------------------------------------
Confidence 79999999999999855 3345555544 24457765422
Q ss_pred ccccccccceeeeeeecccCCcccceEEEeecCceEEEEeC
Q 016982 328 TRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDL 368 (379)
Q Consensus 328 ~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~ 368 (379)
..|.+..+++. |.... ++++++|.|..++++.+
T Consensus 473 ---~~~sg~st~v~-Fg~~a----q~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 473 ---ADHSGLSTGVR-FGEHA----QYLASTSMDAILRLYAL 505 (506)
T ss_pred ---hhcccccceee-ecccc----eEEeeccchhheEEeec
Confidence 45777888888 76655 89999999999998764
No 52
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-34 Score=251.12 Aligned_cols=256 Identities=14% Similarity=0.201 Sum_probs=225.2
Q ss_pred EeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEee
Q 016982 49 VLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYE 128 (379)
Q Consensus 49 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~ 128 (379)
.++..+..|..++|+|....|+++-..|.|++||.+.+.++..+ ..|.++|..++|+|+..++++|+.|-.|++|++.
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rF--deHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk 81 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRF--DEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK 81 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhh--hccCCccceeeecCCCCeEEecCCccEEEEEecc
Confidence 34556678999999999999999999999999999999877766 7899999999999999999999999999999999
Q ss_pred cCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceE
Q 016982 129 QENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAF 208 (379)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 208 (379)
+.. +...+ .+|-+.|..+.|++.-.++++++.|.+|+||+- .+.+++..+.+|+..|.
T Consensus 82 ~rr---clftL-~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNw------------------qsr~~iavltGHnHYVM 139 (1202)
T KOG0292|consen 82 TRR---CLFTL-LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNW------------------QSRKCIAVLTGHNHYVM 139 (1202)
T ss_pred cce---ehhhh-ccccceeEEeeccCCCceEEEccCCCeEEEEec------------------cCCceEEEEecCceEEE
Confidence 987 55666 799999999999999999999999999999994 88999999999999999
Q ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCC----------------------------ceeeeeeeecCCeeeEEEecCCc
Q 016982 209 GVKWSPSGNTLAYVGHNSMIYFVDDVGPS----------------------------PLAQNVAFRDLPLRDVLFVSEKM 260 (379)
Q Consensus 209 ~~~~sp~~~~l~~~~~d~~i~v~d~~~~~----------------------------~~~~~~~~~~~~i~~~~~s~~~~ 260 (379)
|..|+|....++++|-|.+|+|||+..-+ .+...+.+|...|+-++|+|.-.
T Consensus 140 cAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp 219 (1202)
T KOG0292|consen 140 CAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP 219 (1202)
T ss_pred eeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc
Confidence 99999999999999999999999975310 01245668888999999999988
Q ss_pred EEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceee
Q 016982 261 VIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINC 339 (379)
Q Consensus 261 ~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 339 (379)
+++ ++.|..+++|..++.+.|++- ...||.+.|.+
T Consensus 220 liVSG~DDRqVKlWrmnetKaWEvD--------------------------------------------tcrgH~nnVss 255 (1202)
T KOG0292|consen 220 LIVSGADDRQVKLWRMNETKAWEVD--------------------------------------------TCRGHYNNVSS 255 (1202)
T ss_pred eEEecCCcceeeEEEeccccceeeh--------------------------------------------hhhcccCCcce
Confidence 888 556778999999999999862 23699999999
Q ss_pred eeeecccCCcccceEEEeecCceEEEEeCCCccccccC
Q 016982 340 IVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDLLNY 377 (379)
Q Consensus 340 ~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~~~~ 377 (379)
+.++ |. ..+++|.|+|++||+||+...+.++.+
T Consensus 256 vlfh-p~----q~lIlSnsEDksirVwDm~kRt~v~tf 288 (1202)
T KOG0292|consen 256 VLFH-PH----QDLILSNSEDKSIRVWDMTKRTSVQTF 288 (1202)
T ss_pred EEec-Cc----cceeEecCCCccEEEEecccccceeee
Confidence 9954 33 379999999999999999988777765
No 53
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-34 Score=216.26 Aligned_cols=243 Identities=20% Similarity=0.265 Sum_probs=208.9
Q ss_pred cCcceeEEEeCCCC-cEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCC-CEEEEEeCCCeEEEEeccCC
Q 016982 9 FAQCITCHAWSPDH-AMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRS-NRIVTVSHDRNSYVWNQEGS 86 (379)
Q Consensus 9 ~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~vw~~~~~ 86 (379)
..+.+..++|+++. +.+++++.||.++|||+... -.++..++.|...|.++.|++-. +.+++++.|++|++|+...+
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~-s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~ 137 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP-SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP 137 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCC-CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC
Confidence 46889999999854 67888899999999996544 36899999999999999999864 56788899999999999988
Q ss_pred ceeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcC-CCcEEEEeeC
Q 016982 87 EWVPTLVILRLNRAALCVQWSP-KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHP-NNVFLATTST 164 (379)
Q Consensus 87 ~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~ 164 (379)
+.+.++ .+|...|....|+| ..+++++++.|+.+++||++.... ...+ ..|...+.++.|+. +.+.++||+.
T Consensus 138 ~Sv~Tf--~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk---~~~i-~ah~~Eil~cdw~ky~~~vl~Tg~v 211 (311)
T KOG0277|consen 138 NSVQTF--NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK---FMSI-EAHNSEILCCDWSKYNHNVLATGGV 211 (311)
T ss_pred cceEee--cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc---eeEE-EeccceeEeecccccCCcEEEecCC
Confidence 866655 78999999999999 688999999999999999988752 2234 78999999999987 4588999999
Q ss_pred CCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCC-CCEEEEEcCCCeEEEEECCCCCceeeee
Q 016982 165 DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPS-GNTLAYVGHNSMIYFVDDVGPSPLAQNV 243 (379)
Q Consensus 165 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 243 (379)
|+.|+.||++ ....++..+.+|.-.|..++|||. ...|++++.|-+++|||...+...+.+.
T Consensus 212 d~~vr~wDir-----------------~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~ 274 (311)
T KOG0277|consen 212 DNLVRGWDIR-----------------NLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETV 274 (311)
T ss_pred CceEEEEehh-----------------hccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhh
Confidence 9999999983 556778889999999999999995 5678999999999999988776677778
Q ss_pred eeecCCeeeEEEec-CCcEEE-EEeCCCeEEEEe
Q 016982 244 AFRDLPLRDVLFVS-EKMVIG-VGFDCNPMVFAA 275 (379)
Q Consensus 244 ~~~~~~i~~~~~s~-~~~~l~-~~~d~~~~i~~~ 275 (379)
..|..-+..+.|++ ++.++| ++.|..+++|+.
T Consensus 275 ~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 275 DHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hccceEEeccccccccCceeeecccccceeeecc
Confidence 88888899999998 566777 899999999973
No 54
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.5e-35 Score=230.55 Aligned_cols=290 Identities=18% Similarity=0.248 Sum_probs=232.8
Q ss_pred cceeccCcceeEEEeCCCC-cEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 016982 4 IAVHQFAQCITCHAWSPDH-AMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWN 82 (379)
Q Consensus 4 ~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~ 82 (379)
..|.+|.+.|.|++=+|.. ..+|+|+.||.|+|||+... ++..++..|.+.|..|++.. ..+++++.|.+|+.|.
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR--~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR--ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhhh--hhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence 4578999999999999977 78999999999999999987 78899999999999999986 6788999999999999
Q ss_pred ccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCC-cEEEE
Q 016982 83 QEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNN-VFLAT 161 (379)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~ 161 (379)
++.. ....+ .....+..+.-+..++.+++++. .|.|||.+...+ ...+ .-....+.++.|+|.. ..|++
T Consensus 136 ~~~~-p~~ti---lg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~P---v~sm-swG~Dti~svkfNpvETsILas 205 (433)
T KOG0268|consen 136 IDGP-PLHTI---LGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNP---VSSM-SWGADSISSVKFNPVETSILAS 205 (433)
T ss_pred ccCC-cceee---eccccccccccccccccccccCc--eeeecccccCCc---ccee-ecCCCceeEEecCCCcchheee
Confidence 8874 22222 34567778887777888999885 588999877663 4444 3345678999999976 67778
Q ss_pred eeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceee
Q 016982 162 TSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQ 241 (379)
Q Consensus 162 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~ 241 (379)
+..|+.|.+||+ +...+++.... .-.-+.++|+|.+-.++++++|..++.||++.-...+.
T Consensus 206 ~~sDrsIvLyD~------------------R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~ 266 (433)
T KOG0268|consen 206 CASDRSIVLYDL------------------RQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLN 266 (433)
T ss_pred eccCCceEEEec------------------ccCCccceeee-eccccceecCccccceeeccccccceehhhhhhcccch
Confidence 889999999997 55555554432 22346799999888889999999999999998877778
Q ss_pred eeeeecCCeeeEEEecCCcEE-EEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcc
Q 016982 242 NVAFRDLPLRDVLFVSEKMVI-GVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGN 320 (379)
Q Consensus 242 ~~~~~~~~i~~~~~s~~~~~l-~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (379)
...+|.+.|.++.|||.|+-+ ++++|.+|+||..+.....++ ++
T Consensus 267 v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdi--------------------------Yh--------- 311 (433)
T KOG0268|consen 267 VHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDI--------------------------YH--------- 311 (433)
T ss_pred hhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhh--------------------------hh---------
Confidence 888999999999999999755 488999999999877543332 10
Q ss_pred cccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCcccccc
Q 016982 321 DAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDLLN 376 (379)
Q Consensus 321 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~~~ 376 (379)
.---..|.||. |+-|. ++++|||+|+.||+|..+..+.+..
T Consensus 312 ----------tkRMq~V~~Vk-~S~Ds----kyi~SGSdd~nvRlWka~Aseklgv 352 (433)
T KOG0268|consen 312 ----------TKRMQHVFCVK-YSMDS----KYIISGSDDGNVRLWKAKASEKLGV 352 (433)
T ss_pred ----------HhhhheeeEEE-Eeccc----cEEEecCCCcceeeeecchhhhcCC
Confidence 11234688999 77776 9999999999999999987666543
No 55
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-33 Score=244.04 Aligned_cols=263 Identities=14% Similarity=0.114 Sum_probs=220.9
Q ss_pred cCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCce
Q 016982 9 FAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEW 88 (379)
Q Consensus 9 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~ 88 (379)
-...|..++|+|....++++-..|.|++||..-+ .++..|..|.++|..+.|+|+..++++|+.|-+|++|+..+.++
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~--tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrc 85 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMG--TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRC 85 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhh--hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccccee
Confidence 3578999999999999999999999999999877 78899999999999999999999999999999999999999985
Q ss_pred eeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeE
Q 016982 89 VPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKC 168 (379)
Q Consensus 89 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i 168 (379)
..+ +.+|-..|..+.|++.-.+|++++.|.+|+||++.+++ +...+ .+|...|.|..|+|....+++++-|.+|
T Consensus 86 lft--L~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~---~iavl-tGHnHYVMcAqFhptEDlIVSaSLDQTV 159 (1202)
T KOG0292|consen 86 LFT--LLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK---CIAVL-TGHNHYVMCAQFHPTEDLIVSASLDQTV 159 (1202)
T ss_pred hhh--hccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc---eEEEE-ecCceEEEeeccCCccceEEEecccceE
Confidence 554 48999999999999999999999999999999999998 56667 8999999999999999999999999999
Q ss_pred EEEecccccccccccc--------CCCccCC--c-ccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCC
Q 016982 169 RVFSTFIKGVDIKEKK--------EGTSSDT--K-FGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPS 237 (379)
Q Consensus 169 ~v~d~~~~~~~~~~~~--------~~~~~~~--~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~ 237 (379)
+|||+.+-+.....+. .....+. . ..-..+.+++|...|+-++|+|.-.++++|+.|..|++|.+...+
T Consensus 160 RVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK 239 (1202)
T KOG0292|consen 160 RVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK 239 (1202)
T ss_pred EEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc
Confidence 9999964221111111 0000000 0 111224568999999999999999999999999999999987654
Q ss_pred c-eeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCC
Q 016982 238 P-LAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETG 279 (379)
Q Consensus 238 ~-~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~ 279 (379)
. .+.+..+|.+.|.++.|+|...++. .|.|+.+++|+.+...
T Consensus 240 aWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt 283 (1202)
T KOG0292|consen 240 AWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT 283 (1202)
T ss_pred ceeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccccc
Confidence 2 3356779999999999999776665 7889999999987644
No 56
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-33 Score=235.51 Aligned_cols=251 Identities=14% Similarity=0.185 Sum_probs=217.8
Q ss_pred EEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEe
Q 016982 48 HVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYY 127 (379)
Q Consensus 48 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~ 127 (379)
+++..++..|.++.++|....++++-.+|.|.|||.++...+..+.. ...+|++..|-+..+++++|+.|..|++|++
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV--~~~PvRa~kfiaRknWiv~GsDD~~IrVfny 84 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEV--SEVPVRAAKFIARKNWIVTGSDDMQIRVFNY 84 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeee--cccchhhheeeeccceEEEecCCceEEEEec
Confidence 45566889999999999999999999999999999999988887754 5678999999999999999999999999999
Q ss_pred ecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcce
Q 016982 128 EQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWA 207 (379)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 207 (379)
++.+ ..+.+ ..|.+.|.+++.+|...++++++.|-.|++||- .....+.++|++|...|
T Consensus 85 nt~e---kV~~F-eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~w-----------------e~~wa~~qtfeGH~HyV 143 (794)
T KOG0276|consen 85 NTGE---KVKTF-EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDW-----------------ENEWACEQTFEGHEHYV 143 (794)
T ss_pred ccce---eeEEe-eccccceeeeeecCCCCeEEecCCccEEEEeec-----------------cCceeeeeEEcCcceEE
Confidence 9988 46667 899999999999999999999999999999996 36678899999999999
Q ss_pred EEEEECC-CCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCC--cEEE-EEeCCCeEEEEecCCCcEEE
Q 016982 208 FGVKWSP-SGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEK--MVIG-VGFDCNPMVFAADETGIWTF 283 (379)
Q Consensus 208 ~~~~~sp-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~-~~~d~~~~i~~~~~~~~~~~ 283 (379)
.+++|+| |.+.+++++-|++|++|.+.++.+ ..++++|...|+++.+-+.| .+|+ ++.|..+++|++....+.+
T Consensus 144 Mqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~-nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~- 221 (794)
T KOG0276|consen 144 MQVAFNPKDPNTFASASLDRTVKVWSLGSPHP-NFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQ- 221 (794)
T ss_pred EEEEecCCCccceeeeeccccEEEEEcCCCCC-ceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHH-
Confidence 9999999 778899999999999999988775 48899999999999999855 4555 6677789998865433222
Q ss_pred EEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceE
Q 016982 284 IKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKI 363 (379)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v 363 (379)
.+.||...|..+.++ |.-++++|||+||+|
T Consensus 222 ---------------------------------------------TLeGHt~Nvs~v~fh-----p~lpiiisgsEDGTv 251 (794)
T KOG0276|consen 222 ---------------------------------------------TLEGHTNNVSFVFFH-----PELPIIISGSEDGTV 251 (794)
T ss_pred ---------------------------------------------HhhcccccceEEEec-----CCCcEEEEecCCccE
Confidence 457999999999955 333799999999999
Q ss_pred EEEeCCCccc
Q 016982 364 VTWDLESQED 373 (379)
Q Consensus 364 ~iW~~~~~~~ 373 (379)
|||+..+-+.
T Consensus 252 riWhs~Ty~l 261 (794)
T KOG0276|consen 252 RIWNSKTYKL 261 (794)
T ss_pred EEecCcceeh
Confidence 9999887433
No 57
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-32 Score=232.09 Aligned_cols=273 Identities=14% Similarity=0.239 Sum_probs=223.7
Q ss_pred EEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEee
Q 016982 16 HAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVIL 95 (379)
Q Consensus 16 ~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~ 95 (379)
+.|+ ..+.||+|.. ..|++|+..++....+..+. ...|+++.|+++|.+|++|..+|.|.|||....+..+.+ .
T Consensus 183 ldWs-s~n~laValg-~~vylW~~~s~~v~~l~~~~--~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~--~ 256 (484)
T KOG0305|consen 183 LDWS-SANVLAVALG-QSVYLWSASSGSVTELCSFG--EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTL--R 256 (484)
T ss_pred hhcc-cCCeEEEEec-ceEEEEecCCCceEEeEecC--CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccc--c
Confidence 5677 4567777744 58999999998544444443 789999999999999999999999999999888766655 4
Q ss_pred c-CCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEecc
Q 016982 96 R-LNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTF 174 (379)
Q Consensus 96 ~-~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~ 174 (379)
. |...|-+++|+ +..+.+|+.|+.|..+|++..+. ....+ .+|...|..++|++|+++||+|+.|+.+.|||.
T Consensus 257 ~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~--~~~~~-~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~- 330 (484)
T KOG0305|consen 257 GSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQH--VVSTL-QGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDG- 330 (484)
T ss_pred CCcCceeEEEecc--CceEEEecCCCcEEEEEEecchh--hhhhh-hcccceeeeeEECCCCCeeccCCCccceEeccC-
Confidence 4 89999999998 77899999999999999998774 22334 789999999999999999999999999999996
Q ss_pred ccccccccccCCCccCCcccceEEEeecCCcceEEEEECC-CCCEEEEEc--CCCeEEEEECCCCCceeeeeeeecCCee
Q 016982 175 IKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSP-SGNTLAYVG--HNSMIYFVDDVGPSPLAQNVAFRDLPLR 251 (379)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~i~ 251 (379)
...++...+..|...|..++|+| ...+||+|+ .|+.|++||..++..+ ..+. .+..|.
T Consensus 331 -----------------~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i-~~vd-tgsQVc 391 (484)
T KOG0305|consen 331 -----------------LSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARI-DSVD-TGSQVC 391 (484)
T ss_pred -----------------CCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEe-cccc-cCCcee
Confidence 56677888999999999999999 677888875 7999999999987643 4444 467899
Q ss_pred eEEEecCCcEEEE---EeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccc
Q 016982 252 DVLFVSEKMVIGV---GFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRT 328 (379)
Q Consensus 252 ~~~~s~~~~~l~~---~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (379)
++.|++..+-|++ -.++.+.||.+..-. ...
T Consensus 392 sL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~---~~~------------------------------------------- 425 (484)
T KOG0305|consen 392 SLIWSKKYKELLSTHGYSENQITLWKYPSMK---LVA------------------------------------------- 425 (484)
T ss_pred eEEEcCCCCEEEEecCCCCCcEEEEeccccc---eee-------------------------------------------
Confidence 9999998754442 246678888765421 111
Q ss_pred cccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCC
Q 016982 329 RGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLES 370 (379)
Q Consensus 329 ~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~ 370 (379)
.+.||...|..++ .+||+ ..++||+.|.++++|++-+
T Consensus 426 ~l~gH~~RVl~la-~SPdg----~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 426 ELLGHTSRVLYLA-LSPDG----ETIVTGAADETLRFWNLFD 462 (484)
T ss_pred eecCCcceeEEEE-ECCCC----CEEEEecccCcEEeccccC
Confidence 3479999999999 77776 9999999999999999976
No 58
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.2e-34 Score=234.81 Aligned_cols=261 Identities=15% Similarity=0.191 Sum_probs=216.2
Q ss_pred EEEEEeccCCCceEEEEEcC-CCCEEEEEeCCCeEEEEeccC-CceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeE
Q 016982 45 EKLHVLQKHDQIVSGIDWSV-RSNRIVTVSHDRNSYVWNQEG-SEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTV 122 (379)
Q Consensus 45 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v 122 (379)
+.+..+.+|...|+++.|.| .+.+|++++.|+.|+||++.. +.+++.+ .+|..+|.+++|+++|..+++++.|+.+
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf--~gH~k~Vrd~~~s~~g~~fLS~sfD~~l 282 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTF--KGHRKPVRDASFNNCGTSFLSASFDRFL 282 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhh--hcchhhhhhhhccccCCeeeeeecceee
Confidence 45678899999999999999 788999999999999999987 6666665 7899999999999999999999999999
Q ss_pred EEEEeecCCceeEEEEEeecCCcCEEEEEEcCCC-cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEee
Q 016982 123 CICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNN-VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD 201 (379)
Q Consensus 123 ~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (379)
++||.+++. +...+ .....++|+.|+|++ +.+++|+.|+.|+.||+ ++++.++++.
T Consensus 283 KlwDtETG~---~~~~f--~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDi------------------Rs~kvvqeYd 339 (503)
T KOG0282|consen 283 KLWDTETGQ---VLSRF--HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDI------------------RSGKVVQEYD 339 (503)
T ss_pred eeeccccce---EEEEE--ecCCCceeeecCCCCCcEEEEecCCCcEEEEec------------------cchHHHHHHH
Confidence 999999998 44444 445678999999998 89999999999999997 7888888899
Q ss_pred cCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCc
Q 016982 202 LSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGI 280 (379)
Q Consensus 202 ~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~ 280 (379)
.|-+.|..+.|-++|+++++++.|++++||+.+.+.........+.....++..+|++.+++ -+.|+.+.+|.....-
T Consensus 340 ~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~- 418 (503)
T KOG0282|consen 340 RHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPF- 418 (503)
T ss_pred hhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccc-
Confidence 99999999999999999999999999999998887654334444455677899999999887 5788889888854321
Q ss_pred EEEEEEecccccCCCCCccCCCcccccceeeccccccCccccccccccccccccc--ceeeeeeecccCCcccceEEEee
Q 016982 281 WTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVN--CINCIVPLREAGSSRITRFTTSG 358 (379)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~~~~l~t~~ 358 (379)
+... .. .+.||.. --..+. |+||| ++|++|+
T Consensus 419 -r~nk---------------------kK--------------------~feGh~vaGys~~v~-fSpDG----~~l~SGd 451 (503)
T KOG0282|consen 419 -RLNK---------------------KK--------------------RFEGHSVAGYSCQVD-FSPDG----RTLCSGD 451 (503)
T ss_pred -ccCH---------------------hh--------------------hhcceeccCceeeEE-EcCCC----CeEEeec
Confidence 1100 01 2256743 334555 88776 9999999
Q ss_pred cCceEEEEeCCCccccccCC
Q 016982 359 LDGKIVTWDLESQEDLLNYH 378 (379)
Q Consensus 359 ~Dg~v~iW~~~~~~~~~~~~ 378 (379)
.||.+.+||.++-+.+.+++
T Consensus 452 sdG~v~~wdwkt~kl~~~lk 471 (503)
T KOG0282|consen 452 SDGKVNFWDWKTTKLVSKLK 471 (503)
T ss_pred CCccEEEeechhhhhhhccc
Confidence 99999999999988777654
No 59
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=1.9e-32 Score=242.70 Aligned_cols=295 Identities=19% Similarity=0.253 Sum_probs=232.3
Q ss_pred ceecc-CcceeEEEeCCCCcEEEEEe--cCCeEEEEEecCC----------ceEEEEEeccCCCceEEEEEcCCCCEEEE
Q 016982 5 AVHQF-AQCITCHAWSPDHAMVAFCP--NNNEVHIYKLIQE----------KWEKLHVLQKHDQIVSGIDWSVRSNRIVT 71 (379)
Q Consensus 5 ~~~~~-~~~i~~~~~s~~~~~l~~~~--~dg~i~i~~~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 71 (379)
+..+| ...|.+++.+|||..+|+|+ .|+.+.||+.+.= -.+.+.++..|.+.|+|+.|+|||++||+
T Consensus 7 ~wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAs 86 (942)
T KOG0973|consen 7 TWVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLAS 86 (942)
T ss_pred cccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEee
Confidence 33444 67899999999999999999 7999999997521 12456677889999999999999999999
Q ss_pred EeCCCeEEEEeccC----------------CceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeE
Q 016982 72 VSHDRNSYVWNQEG----------------SEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWV 135 (379)
Q Consensus 72 ~~~d~~i~vw~~~~----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~ 135 (379)
|+.|+.|.+|.... ..+.....+.+|...|..++|+|++.++++++.|++|.+|+..+.+ .
T Consensus 87 GSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~---~ 163 (942)
T KOG0973|consen 87 GSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFE---L 163 (942)
T ss_pred ccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccce---e
Confidence 99999999999772 0233445567899999999999999999999999999999998885 5
Q ss_pred EEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecC------CcceEE
Q 016982 136 SKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS------FSWAFG 209 (379)
Q Consensus 136 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~ 209 (379)
.+.+ .+|.+.|..+.|.|-|++|++-+.|++|+||++ ......+.+..+ ...+..
T Consensus 164 ~~vl-~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt------------------~dw~i~k~It~pf~~~~~~T~f~R 224 (942)
T KOG0973|consen 164 LKVL-RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRT------------------SDWGIEKSITKPFEESPLTTFFLR 224 (942)
T ss_pred eeee-ecccccccceEECCccCeeeeecCCceEEEEEc------------------ccceeeEeeccchhhCCCcceeee
Confidence 7777 899999999999999999999999999999986 233344444332 234789
Q ss_pred EEECCCCCEEEEEc----CCCeEEEEECCCCCceeeeeeeecCCeeeEEEec------CC---------c--EEE-EEeC
Q 016982 210 VKWSPSGNTLAYVG----HNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVS------EK---------M--VIG-VGFD 267 (379)
Q Consensus 210 ~~~sp~~~~l~~~~----~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~------~~---------~--~l~-~~~d 267 (379)
+.|||||.+|++.. .-..+.|.+-.+-+ .-..+-+|..++..+.|+| .. . .+| ++.|
T Consensus 225 lSWSPDG~~las~nA~n~~~~~~~IieR~tWk-~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqD 303 (942)
T KOG0973|consen 225 LSWSPDGHHLASPNAVNGGKSTIAIIERGTWK-VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQD 303 (942)
T ss_pred cccCCCcCeecchhhccCCcceeEEEecCCce-eeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCC
Confidence 99999999999864 23478888864443 4477889999999999998 11 1 334 6789
Q ss_pred CCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccC
Q 016982 268 CNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAG 347 (379)
Q Consensus 268 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 347 (379)
+.+.||.....+-. |. ...--...|..++ |++||
T Consensus 304 rSlSVW~T~~~RPl----------------------------~v-----------------i~~lf~~SI~Dms-WspdG 337 (942)
T KOG0973|consen 304 RSLSVWNTALPRPL----------------------------FV-----------------IHNLFNKSIVDMS-WSPDG 337 (942)
T ss_pred ccEEEEecCCCCch----------------------------hh-----------------hhhhhcCceeeee-EcCCC
Confidence 99999985322100 10 0011256799999 88776
Q ss_pred CcccceEEEeecCceEEEEeCCCcc
Q 016982 348 SSRITRFTTSGLDGKIVTWDLESQE 372 (379)
Q Consensus 348 ~~~~~~l~t~~~Dg~v~iW~~~~~~ 372 (379)
..|..||.||+|.+..+...+
T Consensus 338 ----~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 338 ----FSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred ----CeEEEEecCCeEEEEEcchHH
Confidence 899999999999999998643
No 60
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=4.3e-32 Score=236.76 Aligned_cols=281 Identities=17% Similarity=0.229 Sum_probs=238.3
Q ss_pred cCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEE-eccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCc
Q 016982 9 FAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHV-LQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSE 87 (379)
Q Consensus 9 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~ 87 (379)
+...+.+..|. ..++++++.+++|++|+..++ ..+.. +.+|.+.|.++++...+.+|++|+.|.++++||..+++
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~--~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~ 282 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNG--YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE 282 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccc--eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc
Confidence 46788888887 578999999999999999987 45555 99999999999998878899999999999999999999
Q ss_pred eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCe
Q 016982 88 WVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGK 167 (379)
Q Consensus 88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~ 167 (379)
+...+ .+|...+.++... ...+++|+.|.+|++|++.++. ....+ .+|.++|.++..+ +.++++|+.|++
T Consensus 283 C~~~l--~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~---~l~l~-~~h~~~V~~v~~~--~~~lvsgs~d~~ 352 (537)
T KOG0274|consen 283 CTHSL--QGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGA---CLNLL-RGHTGPVNCVQLD--EPLLVSGSYDGT 352 (537)
T ss_pred EEEEe--cCCCceEEEEEcc--CceEeeccCCceEEEEeccCcc---eEEEe-ccccccEEEEEec--CCEEEEEecCce
Confidence 87777 6899999998876 4578888999999999999887 56666 6699999999996 889999999999
Q ss_pred EEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeec
Q 016982 168 CRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRD 247 (379)
Q Consensus 168 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 247 (379)
|++||+ .++++++++.+|..+|.++.+.+. ..+++|+.|+.|++||+.+...++..+.+|.
T Consensus 353 v~VW~~------------------~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~ 413 (537)
T KOG0274|consen 353 VKVWDP------------------RTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHT 413 (537)
T ss_pred EEEEEh------------------hhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCc
Confidence 999997 689999999999999999988876 8899999999999999999845778888888
Q ss_pred CCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccc
Q 016982 248 LPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESS 326 (379)
Q Consensus 248 ~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (379)
.-+..+.+ .+++|. ++.|+.|++|+..+.+..+..
T Consensus 414 ~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~------------------------------------------ 449 (537)
T KOG0274|consen 414 SLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTL------------------------------------------ 449 (537)
T ss_pred cccccccc--ccceeEeccccccEEEeecccCceeeee------------------------------------------
Confidence 87766554 345555 788999999987776544432
Q ss_pred cccccc-cccceeeeeeecccCCcccceEEEeecCceEEEEeCCCccccccC
Q 016982 327 RTRGGT-HVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDLLNY 377 (379)
Q Consensus 327 ~~~~~~-h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~~~~ 377 (379)
.+ |...|..++ +. + ..+++++.||.+++||+++++..+.+
T Consensus 450 ----~~~~~~~v~~l~-~~-~-----~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 450 ----EGRHVGGVSALA-LG-K-----EEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred ----ccCCcccEEEee-cC-c-----ceEEEEecCCeeEEEecccCchhhhh
Confidence 23 667788888 42 1 57999999999999999998887754
No 61
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-32 Score=211.73 Aligned_cols=298 Identities=15% Similarity=0.213 Sum_probs=250.7
Q ss_pred ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec-
Q 016982 5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ- 83 (379)
Q Consensus 5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~- 83 (379)
.+.+|.+.|+.++.......+.+++.|.+-+||.++++ .++.++.+|.+.|++++|++.+.++++++.|++-.||..
T Consensus 143 e~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg--~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~a 220 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESG--ACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAA 220 (481)
T ss_pred hhcccccceeeehhhcCCcceeecccccceeEEeeccc--cceeeecccccceeeEEeccccceEEEccCCcchHHHHHh
Confidence 46789999999999888889999999999999999998 899999999999999999999999999999999999962
Q ss_pred -----cCC--------------------------------ceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEE
Q 016982 84 -----EGS--------------------------------EWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICY 126 (379)
Q Consensus 84 -----~~~--------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~ 126 (379)
... -.++...+.+|.+.|.+..|-..|+.+++++.|.+-.+||
T Consensus 221 v~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwD 300 (481)
T KOG0300|consen 221 VNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWD 300 (481)
T ss_pred hcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeee
Confidence 110 0123445677889999999999999999999999999999
Q ss_pred eecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcc
Q 016982 127 YEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSW 206 (379)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (379)
++++. +...+ .+|....+.++-+|..+++++.+.|.+.++||. .+.-..+..|++|...
T Consensus 301 VEtge---~v~~L-tGHd~ELtHcstHptQrLVvTsSrDtTFRLWDF-----------------ReaI~sV~VFQGHtdt 359 (481)
T KOG0300|consen 301 VETGE---VVNIL-TGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDF-----------------REAIQSVAVFQGHTDT 359 (481)
T ss_pred eccCc---eeccc-cCcchhccccccCCcceEEEEeccCceeEeccc-----------------hhhcceeeeecccccc
Confidence 99998 57777 899999999999999999999999999999997 2455677889999999
Q ss_pred eEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEeCC-CeEEEEecCCCcEEEEE
Q 016982 207 AFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDC-NPMVFAADETGIWTFIK 285 (379)
Q Consensus 207 v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~-~~~i~~~~~~~~~~~~~ 285 (379)
|+++.|..+.+ +++|+.|.+|++||+++....+.++. ...+++.++.+..+.+|+.-.|+ .+++|++++...-.+.+
T Consensus 360 VTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPr 437 (481)
T KOG0300|consen 360 VTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPR 437 (481)
T ss_pred eeEEEEecCCc-eeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCc
Confidence 99999997654 78999999999999999877777776 47889999999988899977665 79999988764322210
Q ss_pred EecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEE
Q 016982 286 FLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVT 365 (379)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~i 365 (379)
. .-.||..-|+|++| ..+- |- .-|.|||-|..+.=
T Consensus 438 ---t---------------------------------------sRqgHrRMV~c~AW-~eeh-p~-cnLftcGFDR~v~g 472 (481)
T KOG0300|consen 438 ---T---------------------------------------SRQGHRRMVTCCAW-LEEH-PA-CNLFTCGFDRMVAG 472 (481)
T ss_pred ---c---------------------------------------cccccceeeeeeec-cccC-cc-cccccccccceeee
Confidence 0 11589999999994 4432 33 56789999999999
Q ss_pred EeCCCcc
Q 016982 366 WDLESQE 372 (379)
Q Consensus 366 W~~~~~~ 372 (379)
|+++...
T Consensus 473 W~in~p~ 479 (481)
T KOG0300|consen 473 WKINTPT 479 (481)
T ss_pred eEecccC
Confidence 9997643
No 62
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.6e-33 Score=239.06 Aligned_cols=247 Identities=17% Similarity=0.226 Sum_probs=194.0
Q ss_pred ccCcceeEEEeCCCCcEEEEEecCCeEEEEEecC--------------------------------C-------------
Q 016982 8 QFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQ--------------------------------E------------- 42 (379)
Q Consensus 8 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~--------------------------------~------------- 42 (379)
.|.+.|.++.||+||+|||+|+.|+.|+||.+.. .
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 7999999999999999999999999999999865 0
Q ss_pred -------------ceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECC-
Q 016982 43 -------------KWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSP- 108 (379)
Q Consensus 43 -------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~- 108 (379)
.-+++..+.+|.+.|..+.||.+ ++|++++.|++|+||++...+++..+ .|..-|+|++|+|
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F---~HndfVTcVaFnPv 420 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF---SHNDFVTCVAFNPV 420 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE---ecCCeeEEEEeccc
Confidence 01234457889999999999965 59999999999999999999876665 5999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCc
Q 016982 109 KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTS 188 (379)
Q Consensus 109 ~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 188 (379)
|.++|++|+-|+.++||++...+ +..- .....-|++++|.|||++.+.|+.+|.+++|++........
T Consensus 421 DDryFiSGSLD~KvRiWsI~d~~---Vv~W--~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~------- 488 (712)
T KOG0283|consen 421 DDRYFISGSLDGKVRLWSISDKK---VVDW--NDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSD------- 488 (712)
T ss_pred CCCcEeecccccceEEeecCcCe---eEee--hhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEe-------
Confidence 88999999999999999998876 3332 35558899999999999999999999999999742111110
Q ss_pred cCCcccceEEEe---ecCCcceEEEEECCC-CCEEEEEcCCCeEEEEECCCCCceeeeeeeec--CCeeeEEEecCCcEE
Q 016982 189 SDTKFGEQILQL---DLSFSWAFGVKWSPS-GNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRD--LPLRDVLFVSEKMVI 262 (379)
Q Consensus 189 ~~~~~~~~~~~~---~~~~~~v~~~~~sp~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~--~~i~~~~~s~~~~~l 262 (379)
..+..- ......|+.+.|.|. -..+++.+.|..|+|||.+... ++..+++.. ..-....|+.||++|
T Consensus 489 ------~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~-lv~KfKG~~n~~SQ~~Asfs~Dgk~I 561 (712)
T KOG0283|consen 489 ------FHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD-LVHKFKGFRNTSSQISASFSSDGKHI 561 (712)
T ss_pred ------eeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchh-hhhhhcccccCCcceeeeEccCCCEE
Confidence 000000 011237999999984 3456777899999999987654 446666543 233567899999998
Q ss_pred E-EEeCCCeEEEEecC
Q 016982 263 G-VGFDCNPMVFAADE 277 (379)
Q Consensus 263 ~-~~~d~~~~i~~~~~ 277 (379)
+ ++.|..+++|..+.
T Consensus 562 Vs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 562 VSASEDSWVYIWKNDS 577 (712)
T ss_pred EEeecCceEEEEeCCC
Confidence 8 55677999999743
No 63
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.6e-32 Score=208.52 Aligned_cols=245 Identities=13% Similarity=0.178 Sum_probs=210.0
Q ss_pred cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCC-CEEEEEeCCCeEEEEe
Q 016982 4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRS-NRIVTVSHDRNSYVWN 82 (379)
Q Consensus 4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~vw~ 82 (379)
..+.+|.++|..+.|++|++.|++++.|.+|+.||.+++ +..+.+++|..-|+++.-+.-| .++.+++.|+++++||
T Consensus 84 ~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG--~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D 161 (338)
T KOG0265|consen 84 WVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETG--KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWD 161 (338)
T ss_pred eeeccccceeEeeeeccCCCEEEEecCCceEEEEecccc--eeeehhccccceeeecCccccCCeEEEecCCCceEEEEe
Confidence 467899999999999999999999999999999999998 8999999999999999855445 4678889999999999
Q ss_pred ccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEe
Q 016982 83 QEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATT 162 (379)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~ 162 (379)
+++.+.+..+ ..+.+++++.|..++..+.+|+-|+.|++||++... ....+ .+|.++|+.+..+|+|.++.+-
T Consensus 162 ~R~k~~~~t~---~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d---~~~~l-sGh~DtIt~lsls~~gs~llsn 234 (338)
T KOG0265|consen 162 IRKKEAIKTF---ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKND---GLYTL-SGHADTITGLSLSRYGSFLLSN 234 (338)
T ss_pred ecccchhhcc---ccceeEEEEEecccccceeeccccCceeeeccccCc---ceEEe-ecccCceeeEEeccCCCccccc
Confidence 9988755554 346789999999999999999999999999998887 45566 8999999999999999999999
Q ss_pred eCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCc----ceEEEEECCCCCEEEEEcCCCeEEEEECCCCCc
Q 016982 163 STDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFS----WAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSP 238 (379)
Q Consensus 163 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~ 238 (379)
+.|.++++||++ +- -+...++..+.+|.. .....+|+|++..+.+++.|..+++||.....
T Consensus 235 sMd~tvrvwd~r-------p~-------~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~- 299 (338)
T KOG0265|consen 235 SMDNTVRVWDVR-------PF-------APSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRR- 299 (338)
T ss_pred cccceEEEEEec-------cc-------CCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccccc-
Confidence 999999999872 11 123455777766532 34678999999999999999999999966644
Q ss_pred eeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEE
Q 016982 239 LAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMV 272 (379)
Q Consensus 239 ~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i 272 (379)
++..+.+|.+.|.+++|+|...+|. +++|.++++
T Consensus 300 ~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 300 ILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred EEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 6688999999999999999888776 778888765
No 64
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2e-31 Score=222.87 Aligned_cols=243 Identities=19% Similarity=0.213 Sum_probs=208.9
Q ss_pred ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982 5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE 84 (379)
Q Consensus 5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~ 84 (379)
.+..|...+..+.|+|++++|++++.+|.|++|++.++ +....+..|...+.++.|+|+++++++++.++.+.+||+.
T Consensus 46 ~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (289)
T cd00200 46 TLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG--ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE 123 (289)
T ss_pred EEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc--cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECC
Confidence 45668889999999999999999999999999999886 5667778898899999999998888888889999999999
Q ss_pred CCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC
Q 016982 85 GSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST 164 (379)
Q Consensus 85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 164 (379)
+++....+ ..|...+.++.|+|++.++++++.++.+++||++..+ ....+ ..|...+.++.|+|+++.+++++.
T Consensus 124 ~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~---~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~ 197 (289)
T cd00200 124 TGKCLTTL--RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK---CVATL-TGHTGEVNSVAFSPDGEKLLSSSS 197 (289)
T ss_pred CcEEEEEe--ccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc---cceeE-ecCccccceEEECCCcCEEEEecC
Confidence 77755544 4688899999999999988888889999999998765 34455 678889999999999999999999
Q ss_pred CCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeee
Q 016982 165 DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVA 244 (379)
Q Consensus 165 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~ 244 (379)
++.+++||+ ..++.+..+..|...+.++.|+|++.++++++.++.|++||+.+.. ....+.
T Consensus 198 ~~~i~i~d~------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~-~~~~~~ 258 (289)
T cd00200 198 DGTIKLWDL------------------STGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE-CVQTLS 258 (289)
T ss_pred CCcEEEEEC------------------CCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCce-eEEEcc
Confidence 999999997 4566777777788899999999999888888889999999998765 346677
Q ss_pred eecCCeeeEEEecCCcEEE-EEeCCCeEEEE
Q 016982 245 FRDLPLRDVLFVSEKMVIG-VGFDCNPMVFA 274 (379)
Q Consensus 245 ~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~ 274 (379)
.|...+.+++|+|++.+++ ++.|+.+.+|+
T Consensus 259 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 259 GHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred ccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 7888999999999988777 67788888874
No 65
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.4e-31 Score=209.68 Aligned_cols=303 Identities=14% Similarity=0.125 Sum_probs=220.6
Q ss_pred EEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEE
Q 016982 45 EKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCI 124 (379)
Q Consensus 45 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i 124 (379)
..+..|..|.++|.+++.+|+.++++||+.|..-.+|++.++..... ..+|+..|+++.|+.+|.+||+|..+|.|+|
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~e--ltgHKDSVt~~~FshdgtlLATGdmsG~v~v 132 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGE--LTGHKDSVTCCSFSHDGTLLATGDMSGKVLV 132 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeE--ecCCCCceEEEEEccCceEEEecCCCccEEE
Confidence 35678899999999999999999999999999999999999985444 4789999999999999999999999999999
Q ss_pred EEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCC
Q 016982 125 CYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSF 204 (379)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (379)
|...++.. ...+ ...-..+.-+.|+|.+..|+.|+.||.+.+|.+ ......+.+.+|+
T Consensus 133 ~~~stg~~---~~~~-~~e~~dieWl~WHp~a~illAG~~DGsvWmw~i------------------p~~~~~kv~~Gh~ 190 (399)
T KOG0296|consen 133 FKVSTGGE---QWKL-DQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQI------------------PSQALCKVMSGHN 190 (399)
T ss_pred EEcccCce---EEEe-ecccCceEEEEecccccEEEeecCCCcEEEEEC------------------CCcceeeEecCCC
Confidence 99998873 3334 345567888999999999999999999999997 4557778899999
Q ss_pred cceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEE
Q 016982 205 SWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTF 283 (379)
Q Consensus 205 ~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~ 283 (379)
.++++-.|.|+|+.++++..||+|++||+.++.++...-.....+..++.++..+..+. +..++.+++.+....+....
T Consensus 191 ~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~ 270 (399)
T KOG0296|consen 191 SPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNC 270 (399)
T ss_pred CCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEe
Confidence 99999999999999999999999999999999876444434456677888888888777 44555555544333322222
Q ss_pred EEE--eccccc--CCCCCccCCCcccccceeeccc--cccCcccccccccccccccccceeeeeeecccCCcccceEEEe
Q 016982 284 IKF--LDERKT--SSSGPKYGSQFSEAFGKLYGQS--KYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTS 357 (379)
Q Consensus 284 ~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~ 357 (379)
... +..... ..........++..+..+.-.. .....-+......+...-|...|+.+.|.. + .+|+|+
T Consensus 271 ~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t-----~~l~t~ 344 (399)
T KOG0296|consen 271 NNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-T-----DYLLTA 344 (399)
T ss_pred cCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-c-----chheee
Confidence 110 000000 0000011111112222221111 111111111222334567899999999543 3 699999
Q ss_pred ecCceEEEEeCCCccccccC
Q 016982 358 GLDGKIVTWDLESQEDLLNY 377 (379)
Q Consensus 358 ~~Dg~v~iW~~~~~~~~~~~ 377 (379)
+.||.|++||.++|+++-.+
T Consensus 345 c~~g~v~~wDaRtG~l~~~y 364 (399)
T KOG0296|consen 345 CANGKVRQWDARTGQLKFTY 364 (399)
T ss_pred ccCceEEeeeccccceEEEE
Confidence 99999999999999887543
No 66
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=3.2e-32 Score=222.51 Aligned_cols=244 Identities=17% Similarity=0.200 Sum_probs=187.5
Q ss_pred ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCc--eEEEEEec-cCCCceEEEEEcCCCCEEEEEeCCCeEEEE
Q 016982 5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEK--WEKLHVLQ-KHDQIVSGIDWSVRSNRIVTVSHDRNSYVW 81 (379)
Q Consensus 5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~--~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw 81 (379)
.+.+|...|.++++.|.|-+|++|+.|..|++||...-. .+..+.+. .....|++++|++.|..|++.+.....+|+
T Consensus 162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~ 241 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLL 241 (641)
T ss_pred eccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEE
Confidence 466778999999999999999999999999999997531 11222222 234479999999999999888888899999
Q ss_pred eccCCceeeeE----------EeecCCCceeEEEECCC-CCEEEEEeCCCeEEEEEeecCCceeEEEEEe----ecCCcC
Q 016982 82 NQEGSEWVPTL----------VILRLNRAALCVQWSPK-ENKFAVGSGAKTVCICYYEQENNWWVSKLIR----KRHDSS 146 (379)
Q Consensus 82 ~~~~~~~~~~~----------~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~----~~~~~~ 146 (379)
|-...++.... ...+|...+++.+|+|. ...+++++.||++++||++..+. ..+.+. .+..-+
T Consensus 242 DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~--q~qVik~k~~~g~Rv~ 319 (641)
T KOG0772|consen 242 DRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS--QLQVIKTKPAGGKRVP 319 (641)
T ss_pred ccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh--heeEEeeccCCCcccC
Confidence 97665433221 24568889999999995 46789999999999999987652 122221 234457
Q ss_pred EEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccce-EEEeecCCc--ceEEEEECCCCCEEEEEc
Q 016982 147 VTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQ-ILQLDLSFS--WAFGVKWSPSGNTLAYVG 223 (379)
Q Consensus 147 v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~v~~~~~sp~~~~l~~~~ 223 (379)
++.++|+|++++||+|..||.|.+|+.. ..+..+ ...-..|.. .|+++.||++|++|++-+
T Consensus 320 ~tsC~~nrdg~~iAagc~DGSIQ~W~~~----------------~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg 383 (641)
T KOG0772|consen 320 VTSCAWNRDGKLIAAGCLDGSIQIWDKG----------------SRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG 383 (641)
T ss_pred ceeeecCCCcchhhhcccCCceeeeecC----------------CcccccceEeeeccCCCCceeEEEeccccchhhhcc
Confidence 8999999999999999999999999852 111122 222345655 899999999999999999
Q ss_pred CCCeEEEEECCCCCceeeeeeee--cCCeeeEEEecCCcEEEEEe
Q 016982 224 HNSMIYFVDDVGPSPLAQNVAFR--DLPLRDVLFVSEKMVIGVGF 266 (379)
Q Consensus 224 ~d~~i~v~d~~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~ 266 (379)
.|+++++||+++.++.+....+- ..+-+.++|||+.++|++|.
T Consensus 384 ~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGt 428 (641)
T KOG0772|consen 384 FDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGT 428 (641)
T ss_pred CCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecc
Confidence 99999999999987765554432 34578899999999998653
No 67
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.8e-31 Score=249.46 Aligned_cols=269 Identities=15% Similarity=0.162 Sum_probs=208.5
Q ss_pred CCeEEEEEecCCceEEE---EEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCc----e--eeeEEeecCCCce
Q 016982 31 NNEVHIYKLIQEKWEKL---HVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSE----W--VPTLVILRLNRAA 101 (379)
Q Consensus 31 dg~i~i~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~----~--~~~~~~~~~~~~v 101 (379)
+|.+++|+...-..... ..+..|...|.+++|+|++++|++|+.|+.|++|++.... . .+... ..+...+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~-~~~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVE-LASRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEE-ecccCce
Confidence 56677887765321111 1244588999999999999999999999999999975421 0 11122 2345688
Q ss_pred eEEEECC-CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcC-CCcEEEEeeCCCeEEEEeccccccc
Q 016982 102 LCVQWSP-KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHP-NNVFLATTSTDGKCRVFSTFIKGVD 179 (379)
Q Consensus 102 ~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~d~~i~v~d~~~~~~~ 179 (379)
.+++|+| ++.+|++++.||.|++||+.+.. ....+ .+|...|.+++|+| ++.+|++|+.|+.|++||+
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~---~~~~~-~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~------ 605 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQ---LVTEM-KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSI------ 605 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCe---EEEEe-cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEEC------
Confidence 9999987 57899999999999999998765 35555 78999999999997 7899999999999999997
Q ss_pred cccccCCCccCCcccceEEEeecCCcceEEEEEC-CCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecC
Q 016982 180 IKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWS-PSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSE 258 (379)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~ 258 (379)
..+.++..+..+ ..+.++.|+ ++|.+|++|+.|+.|++||++........+.+|...|..+.|.+.
T Consensus 606 ------------~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~ 672 (793)
T PLN00181 606 ------------NQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDS 672 (793)
T ss_pred ------------CCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCC
Confidence 556677777654 578999995 579999999999999999998766445677789999999999854
Q ss_pred CcEEEEEeCCCeEEEEecCCC---cEEEEEEecccccCCCCCccCCCcccccceeeccccccCccccccccccccccccc
Q 016982 259 KMVIGVGFDCNPMVFAADETG---IWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVN 335 (379)
Q Consensus 259 ~~~l~~~~d~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 335 (379)
..+++++.|+.+++|+..... .+... . .+.+|..
T Consensus 673 ~~lvs~s~D~~ikiWd~~~~~~~~~~~~l-----------------------~--------------------~~~gh~~ 709 (793)
T PLN00181 673 STLVSSSTDNTLKLWDLSMSISGINETPL-----------------------H--------------------SFMGHTN 709 (793)
T ss_pred CEEEEEECCCEEEEEeCCCCccccCCcce-----------------------E--------------------EEcCCCC
Confidence 445558889999999875321 00100 1 2368999
Q ss_pred ceeeeeeecccCCcccceEEEeecCceEEEEeCCCc
Q 016982 336 CINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQ 371 (379)
Q Consensus 336 ~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~ 371 (379)
.++++. +++++ .+||+|+.||.|++|+....
T Consensus 710 ~i~~v~-~s~~~----~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 710 VKNFVG-LSVSD----GYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred CeeEEE-EcCCC----CEEEEEeCCCEEEEEECCCC
Confidence 999998 77665 89999999999999997654
No 68
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=7.2e-34 Score=221.49 Aligned_cols=240 Identities=13% Similarity=0.211 Sum_probs=206.6
Q ss_pred cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982 4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ 83 (379)
Q Consensus 4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~ 83 (379)
..+.+|.+.|.|+.|. .+.+++|+.|.+|++||.+++ +++.++.+|...|..+.|+ ..++++++.|.++.+||+
T Consensus 231 ~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tg--e~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm 304 (499)
T KOG0281|consen 231 KILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTG--EPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDM 304 (499)
T ss_pred HhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCC--chhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEec
Confidence 3578999999999995 569999999999999999998 8999999999999999998 459999999999999999
Q ss_pred cCCceee-eEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEe
Q 016982 84 EGSEWVP-TLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATT 162 (379)
Q Consensus 84 ~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~ 162 (379)
....-+. ...+.+|...|..+.|+ .+++++++.|.+|++|++.+.+ ..+.+ .+|...|.|+.+ .++++++|
T Consensus 305 ~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~e---fvRtl-~gHkRGIAClQY--r~rlvVSG 376 (499)
T KOG0281|consen 305 ASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCE---FVRTL-NGHKRGIACLQY--RDRLVVSG 376 (499)
T ss_pred cCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEecccee---eehhh-hcccccceehhc--cCeEEEec
Confidence 8764111 11236789999999997 5699999999999999999988 67777 899999999988 68999999
Q ss_pred eCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCc----
Q 016982 163 STDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSP---- 238 (379)
Q Consensus 163 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~---- 238 (379)
+.|.+|++||+ ..+.++..+++|..-|.++.|. .+.+++|+.||.|++||+.....
T Consensus 377 SSDntIRlwdi------------------~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~ 436 (499)
T KOG0281|consen 377 SSDNTIRLWDI------------------ECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAP 436 (499)
T ss_pred CCCceEEEEec------------------cccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCccc
Confidence 99999999997 7899999999999999999996 66799999999999999876533
Q ss_pred ----eeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEecCC
Q 016982 239 ----LAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADET 278 (379)
Q Consensus 239 ----~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~ 278 (379)
++..+..|.+.|..+.|.. -++++++.|..|.+|++.+.
T Consensus 437 ~~~~Cl~~lv~hsgRVFrLQFD~-fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 437 ASTLCLRTLVEHSGRVFRLQFDE-FQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred ccchHHHhhhhccceeEEEeecc-eEEEeccCCCeEEEEEcCCC
Confidence 2344556788899999953 46777899999999987653
No 69
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=3.3e-31 Score=230.98 Aligned_cols=231 Identities=14% Similarity=0.149 Sum_probs=183.4
Q ss_pred cceeccCcceeEEEeCC-CCcEEEEEecCCeEEEEEecCCce-----EEEEEeccCCCceEEEEEcCCC-CEEEEEeCCC
Q 016982 4 IAVHQFAQCITCHAWSP-DHAMVAFCPNNNEVHIYKLIQEKW-----EKLHVLQKHDQIVSGIDWSVRS-NRIVTVSHDR 76 (379)
Q Consensus 4 ~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~ 76 (379)
+.+.+|.+.|++++|+| ++++|++|+.|+.|++||+.++.. .++..+.+|...|.+++|+|++ ++|++++.|+
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 45788999999999999 889999999999999999976421 3567889999999999999986 6899999999
Q ss_pred eEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcC-EEEEEEcCC
Q 016982 77 NSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSS-VTSVAWHPN 155 (379)
Q Consensus 77 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~p~ 155 (379)
+|++||+.+++....+ ..|...|.+++|+|++++|++++.|+.|++||++++. ....+ ..|.+. ...+.|.++
T Consensus 149 tVrIWDl~tg~~~~~l--~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~---~v~tl-~~H~~~~~~~~~w~~~ 222 (493)
T PTZ00421 149 VVNVWDVERGKAVEVI--KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT---IVSSV-EAHASAKSQRCLWAKR 222 (493)
T ss_pred EEEEEECCCCeEEEEE--cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc---EEEEE-ecCCCCcceEEEEcCC
Confidence 9999999998754444 6788999999999999999999999999999999876 34445 567654 456789998
Q ss_pred CcEEEEee----CCCeEEEEeccccccccccccCCCccCCcccceEEEeecC-CcceEEEEECCCCCEEEEEc-CCCeEE
Q 016982 156 NVFLATTS----TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS-FSWAFGVKWSPSGNTLAYVG-HNSMIY 229 (379)
Q Consensus 156 ~~~l~~~~----~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~-~d~~i~ 229 (379)
+..+++++ .|+.|++||++ ....++.....+ ...+....|++++++|++++ .|+.|+
T Consensus 223 ~~~ivt~G~s~s~Dr~VklWDlr-----------------~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Ir 285 (493)
T PTZ00421 223 KDLIITLGCSKSQQRQIMLWDTR-----------------KMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIR 285 (493)
T ss_pred CCeEEEEecCCCCCCeEEEEeCC-----------------CCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEE
Confidence 87777654 47899999972 222333333322 33466678999999999887 599999
Q ss_pred EEECCCCCceeeeee-eecCCeeeEEEecC
Q 016982 230 FVDDVGPSPLAQNVA-FRDLPLRDVLFVSE 258 (379)
Q Consensus 230 v~d~~~~~~~~~~~~-~~~~~i~~~~~s~~ 258 (379)
+||+.++... .... .+..++..++|.|.
T Consensus 286 iwdl~~~~~~-~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 286 CFELMNERLT-FCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred EEEeeCCceE-EEeeccCCCCCcceEeccc
Confidence 9999887643 3332 24567888999884
No 70
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-30 Score=197.36 Aligned_cols=245 Identities=13% Similarity=0.166 Sum_probs=198.2
Q ss_pred ccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeC--CCeEEEEeccC
Q 016982 8 QFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSH--DRNSYVWNQEG 85 (379)
Q Consensus 8 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~vw~~~~ 85 (379)
.....|+++.|+++|.++++++.|..++|||..++ +.+.++..+.-.+..+.|....+.++.++. |.+|+..++.+
T Consensus 12 ~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g--~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~d 89 (311)
T KOG1446|consen 12 ETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSG--KQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHD 89 (311)
T ss_pred cCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCC--ceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeec
Confidence 34789999999999999999999999999999998 777888877778888899777666666665 88999999999
Q ss_pred CceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCC
Q 016982 86 SEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTD 165 (379)
Q Consensus 86 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d 165 (379)
.+.++.+ .+|...|.+++.+|-+..+++++.|++|++||++..+. ...+ +...-..++|.|.|-++|++...
T Consensus 90 NkylRYF--~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~c---qg~l---~~~~~pi~AfDp~GLifA~~~~~ 161 (311)
T KOG1446|consen 90 NKYLRYF--PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKC---QGLL---NLSGRPIAAFDPEGLIFALANGS 161 (311)
T ss_pred CceEEEc--CCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCC---ceEE---ecCCCcceeECCCCcEEEEecCC
Confidence 9987776 89999999999999999999999999999999997763 3333 22233467899999999999888
Q ss_pred CeEEEEeccccccccccccCCCccCCcccceEEEee---cCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeee
Q 016982 166 GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD---LSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQN 242 (379)
Q Consensus 166 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 242 (379)
..|++||++. -...+..++. ......+.+.|||||++++.+...+.+++.|.-.+. +...
T Consensus 162 ~~IkLyD~Rs----------------~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~-~~~t 224 (311)
T KOG1446|consen 162 ELIKLYDLRS----------------FDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGT-VKST 224 (311)
T ss_pred CeEEEEEecc----------------cCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc-Eeee
Confidence 8999999731 1123333332 335678999999999999999999999999988876 4566
Q ss_pred eeeecCC---eeeEEEecCCcEEEEE-eCCCeEEEEecCCC
Q 016982 243 VAFRDLP---LRDVLFVSEKMVIGVG-FDCNPMVFAADETG 279 (379)
Q Consensus 243 ~~~~~~~---i~~~~~s~~~~~l~~~-~d~~~~i~~~~~~~ 279 (379)
+..+... .-+.+|+||++++.+| .|+.+.+|+.....
T Consensus 225 fs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~ 265 (311)
T KOG1446|consen 225 FSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGK 265 (311)
T ss_pred EeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCc
Confidence 6655432 2578999999999855 56999999986654
No 71
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=5e-33 Score=221.15 Aligned_cols=285 Identities=13% Similarity=0.192 Sum_probs=236.5
Q ss_pred cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982 4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ 83 (379)
Q Consensus 4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~ 83 (379)
..+.-|.+.+..+.|-++...|++|+.|..|++|+...++.....+|.+..++|+++.|.++++++++++.|+.+++|++
T Consensus 169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnv 248 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNV 248 (459)
T ss_pred hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeec
Confidence 34667899999999999989999999999999999998866788899999999999999999999999999999999999
Q ss_pred cCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee
Q 016982 84 EGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS 163 (379)
Q Consensus 84 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 163 (379)
...+...++ .+|...|+++.|......+++|+.|.+|++||+.... +.+.+ -....+.+|..+ ...+++|.
T Consensus 249 d~~r~~~TL--sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~---C~kt~--l~~S~cnDI~~~--~~~~~SgH 319 (459)
T KOG0288|consen 249 DSLRLRHTL--SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAY---CSKTV--LPGSQCNDIVCS--ISDVISGH 319 (459)
T ss_pred cchhhhhhh--cccccceeeehhhccccceeeccccchhhhhhhhhhh---eeccc--cccccccceEec--ceeeeecc
Confidence 998866666 6799999999999877779999999999999998865 44443 233455666664 55688899
Q ss_pred CCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeee
Q 016982 164 TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNV 243 (379)
Q Consensus 164 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 243 (379)
.|++|++||+ +...+......+ +.|+++..+++|..|++++.|.++.++|+++.. +...+
T Consensus 320 ~DkkvRfwD~------------------Rs~~~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~e-I~~~~ 379 (459)
T KOG0288|consen 320 FDKKVRFWDI------------------RSADKTRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKE-IRQTF 379 (459)
T ss_pred cccceEEEec------------------cCCceeeEeecC-cceeeEeeccCCeEEeeecCCCceeeeeccccc-EEEEe
Confidence 9999999997 677778887775 489999999999999999999999999998865 33444
Q ss_pred eee----cCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccC
Q 016982 244 AFR----DLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGV 318 (379)
Q Consensus 244 ~~~----~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (379)
... ....+.+.|||++.|++ ++.|+.++||+...+++-....
T Consensus 380 sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~--------------------------------- 426 (459)
T KOG0288|consen 380 SAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLS--------------------------------- 426 (459)
T ss_pred eccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEec---------------------------------
Confidence 432 24478999999999998 6789999999988765433322
Q ss_pred ccccccccccccccccc-ceeeeeeecccCCcccceEEEeecCceEEEEe
Q 016982 319 GNDAVESSRTRGGTHVN-CINCIVPLREAGSSRITRFTTSGLDGKIVTWD 367 (379)
Q Consensus 319 ~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~ 367 (379)
..|.+ .|++++ |.+.| ..|++++.++.+.+|.
T Consensus 427 ------------~s~s~~aI~s~~-W~~sG----~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 427 ------------LSTSNAAITSLS-WNPSG----SGLLSADKQKAVTLWT 459 (459)
T ss_pred ------------cCCCCcceEEEE-EcCCC----chhhcccCCcceEecC
Confidence 12333 799999 76665 8999999999999994
No 72
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.9e-31 Score=205.60 Aligned_cols=299 Identities=12% Similarity=0.133 Sum_probs=215.0
Q ss_pred ccceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEecc--CCCceEEEEEcCCCCEE-EEEeCCCeEE
Q 016982 3 AIAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQK--HDQIVSGIDWSVRSNRI-VTVSHDRNSY 79 (379)
Q Consensus 3 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l-~~~~~d~~i~ 79 (379)
...|++|.+.|++++|+.||++||+++.|+.|++|++.+=..+..+.++. .-+..+.++|+||.+-+ +++-...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 45689999999999999999999999999999999987521111111110 11245789999998655 4455566799
Q ss_pred EEeccCCc---eeeeE-------EeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEE
Q 016982 80 VWNQEGSE---WVPTL-------VILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTS 149 (379)
Q Consensus 80 vw~~~~~~---~~~~~-------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~ 149 (379)
+|.+...+ ..... ....|+..+..+-...++.+|++++.|..|.+|+++ ++ ....+ ......-+.
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq---~L~~i-dtnq~~n~~ 233 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQ---LLQSI-DTNQSSNYD 233 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cc---eeeee-ccccccccc
Confidence 99875321 10000 112355667777778889999999999999999998 44 34555 455556678
Q ss_pred EEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEE
Q 016982 150 VAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIY 229 (379)
Q Consensus 150 ~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~ 229 (379)
.+.+|+|+++++++...-|++|.+- +..... .+.-..+.++.+|...|..++|+|+...+++.+.||.++
T Consensus 234 aavSP~GRFia~~gFTpDVkVwE~~-----f~kdG~-----fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wr 303 (420)
T KOG2096|consen 234 AAVSPDGRFIAVSGFTPDVKVWEPI-----FTKDGT-----FQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWR 303 (420)
T ss_pred eeeCCCCcEEEEecCCCCceEEEEE-----eccCcc-----hhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEE
Confidence 8999999999999999999999861 111000 122344567889999999999999999999999999999
Q ss_pred EEECCCCC------ceeeee----eeecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCcc
Q 016982 230 FVDDVGPS------PLAQNV----AFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKY 299 (379)
Q Consensus 230 v~d~~~~~------~~~~~~----~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (379)
+||..-.. .+++.. ...++....+..+|+|+.||.+....+.+|....+......
T Consensus 304 iwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~--------------- 368 (420)
T KOG2096|consen 304 IWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPEL--------------- 368 (420)
T ss_pred EeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhH---------------
Confidence 99964321 111221 12233445899999999999999888988876554322111
Q ss_pred CCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEe
Q 016982 300 GSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWD 367 (379)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~ 367 (379)
-..|...|.+++ |+++| ++++||| |..+|+..
T Consensus 369 ------------------------------e~~h~~~Is~is-~~~~g----~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 369 ------------------------------EDIHSTTISSIS-YSSDG----KYIATCG-DRYVRVIR 400 (420)
T ss_pred ------------------------------HHhhcCceeeEE-ecCCC----cEEeeec-ceeeeeec
Confidence 146999999999 87766 9999999 66788765
No 73
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=5.3e-30 Score=223.50 Aligned_cols=247 Identities=15% Similarity=0.180 Sum_probs=191.6
Q ss_pred cceeEEEeCCCCcEEEEEecCCeEEEEEecCCceE-----------EEEEeccCCCceEEEEEcC-CCCEEEEEeCCCeE
Q 016982 11 QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWE-----------KLHVLQKHDQIVSGIDWSV-RSNRIVTVSHDRNS 78 (379)
Q Consensus 11 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~-----------~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i 78 (379)
..|.....++++..+++++.+.....|+...+... ....+.+|.+.|.+++|+| ++++|++++.|++|
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtI 100 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTI 100 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence 44555666778776777777777777776543100 0124678999999999999 78899999999999
Q ss_pred EEEeccCCce-----eeeEEeecCCCceeEEEECCCC-CEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEE
Q 016982 79 YVWNQEGSEW-----VPTLVILRLNRAALCVQWSPKE-NKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAW 152 (379)
Q Consensus 79 ~vw~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 152 (379)
++||+.++.. .+...+.+|...|.+++|+|++ ++|++++.|+.|++||++++. ....+ ..|...|.+++|
T Consensus 101 kIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~---~~~~l-~~h~~~V~sla~ 176 (493)
T PTZ00421 101 MGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK---AVEVI-KCHSDQITSLEW 176 (493)
T ss_pred EEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe---EEEEE-cCCCCceEEEEE
Confidence 9999976532 1233457799999999999975 699999999999999999876 34555 789999999999
Q ss_pred cCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcc-eEEEEECCCCCEEEEEc----CCCe
Q 016982 153 HPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSW-AFGVKWSPSGNTLAYVG----HNSM 227 (379)
Q Consensus 153 ~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~sp~~~~l~~~~----~d~~ 227 (379)
+|++++|++++.|+.|++||+ ++++.+..+..|.+. +..+.|.+++..+++++ .|+.
T Consensus 177 spdG~lLatgs~Dg~IrIwD~------------------rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~ 238 (493)
T PTZ00421 177 NLDGSLLCTTSKDKKLNIIDP------------------RDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQ 238 (493)
T ss_pred ECCCCEEEEecCCCEEEEEEC------------------CCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCe
Confidence 999999999999999999997 667778888888654 45788999888877654 4789
Q ss_pred EEEEECCCCCceeeeeeeec-CCeeeEEEecCCcEEE-EE-eCCCeEEEEecCCC
Q 016982 228 IYFVDDVGPSPLAQNVAFRD-LPLRDVLFVSEKMVIG-VG-FDCNPMVFAADETG 279 (379)
Q Consensus 228 i~v~d~~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~-~~-~d~~~~i~~~~~~~ 279 (379)
|++||+++..........+. ..+....|++++.+|+ ++ .|+.|++|++....
T Consensus 239 VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 239 IMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred EEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 99999987654444443332 3455667899998777 44 48999999988754
No 74
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4e-31 Score=214.67 Aligned_cols=284 Identities=16% Similarity=0.208 Sum_probs=226.1
Q ss_pred eeccCcceeEEEeCCCCc-EEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982 6 VHQFAQCITCHAWSPDHA-MVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE 84 (379)
Q Consensus 6 ~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~ 84 (379)
+..-.+.|++++|+|... -+|+.+. -.+.||+..+. ....++......+.++.|-.||++|+.|+..|.|+++|+.
T Consensus 22 ~~ke~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~--~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k 98 (487)
T KOG0310|consen 22 VHKEHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTR--SVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMK 98 (487)
T ss_pred cccccCcceeEecCCCCCCceEEecc-cEEEEEecchh--hhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccc
Confidence 344467999999999553 3555443 58999998875 4555566677889999999999999999999999999977
Q ss_pred CCceeeeEEeecCCCceeEEEECCC-CCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCC-cEEEEe
Q 016982 85 GSEWVPTLVILRLNRAALCVQWSPK-ENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNN-VFLATT 162 (379)
Q Consensus 85 ~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~ 162 (379)
+....+.+ .+|+.++..+.|+|+ +..+++|++|+.+++||+.+.. +...+ .+|.+.|.|.+|+|.. ..+++|
T Consensus 99 ~r~iLR~~--~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~---v~~~l-~~htDYVR~g~~~~~~~hivvtG 172 (487)
T KOG0310|consen 99 SRVILRQL--YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY---VQAEL-SGHTDYVRCGDISPANDHIVVTG 172 (487)
T ss_pred cHHHHHHH--hhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE---EEEEe-cCCcceeEeeccccCCCeEEEec
Confidence 65544444 789999999999995 5577788888999999999876 33344 8999999999999965 588999
Q ss_pred eCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeee
Q 016982 163 STDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQN 242 (379)
Q Consensus 163 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 242 (379)
++||.|++||++ .....+.++ .|..+|..+.+-|.|..+++++ ...+++||+.++.+.+..
T Consensus 173 sYDg~vrl~DtR-----------------~~~~~v~el-nhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~ 233 (487)
T KOG0310|consen 173 SYDGKVRLWDTR-----------------SLTSRVVEL-NHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTS 233 (487)
T ss_pred CCCceEEEEEec-----------------cCCceeEEe-cCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhh
Confidence 999999999982 222556665 4678999999999999999876 568999999988777677
Q ss_pred eeeecCCeeeEEEecCCc-EEEEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCccc
Q 016982 243 VAFRDLPLRDVLFVSEKM-VIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGND 321 (379)
Q Consensus 243 ~~~~~~~i~~~~~s~~~~-~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (379)
...|...|+|+++..++. +|+++-|+.+++|+..+ |++....
T Consensus 234 ~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~---~Kvv~s~---------------------------------- 276 (487)
T KOG0310|consen 234 MFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTN---YKVVHSW---------------------------------- 276 (487)
T ss_pred hhcccceEEEEEeecCCceEeecccccceEEEEccc---eEEEEee----------------------------------
Confidence 767999999999999876 55588999999999654 4544322
Q ss_pred ccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCC
Q 016982 322 AVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLE 369 (379)
Q Consensus 322 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~ 369 (379)
.-.++|.+++ .++++ +.++.|..||.+.+=+..
T Consensus 277 ----------~~~~pvLsia-vs~dd----~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 277 ----------KYPGPVLSIA-VSPDD----QTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred ----------ecccceeeEE-ecCCC----ceEEEecccceeeeehhh
Confidence 2356899999 66555 899999999998876443
No 75
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=5.9e-31 Score=233.25 Aligned_cols=251 Identities=18% Similarity=0.292 Sum_probs=208.2
Q ss_pred ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecC----------------CceEEEEEeccCCCceEEEEEcCCCCE
Q 016982 5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQ----------------EKWEKLHVLQKHDQIVSGIDWSVRSNR 68 (379)
Q Consensus 5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~ 68 (379)
+...|.+.|+|+.|+|||++||+|+.|+.|.||+... ..|+....+.+|+..|..++|+|++.+
T Consensus 64 ~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~ 143 (942)
T KOG0973|consen 64 TMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSL 143 (942)
T ss_pred eeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccE
Confidence 4567999999999999999999999999999999872 137788999999999999999999999
Q ss_pred EEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEe-----ecC
Q 016982 69 IVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIR-----KRH 143 (379)
Q Consensus 69 l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~-----~~~ 143 (379)
|++++.|++|.+||..+.+....+ .+|.+.|..+.|.|-|++||+-+.|++|++|+...-. +.+.+. ...
T Consensus 144 lvS~s~DnsViiwn~~tF~~~~vl--~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~---i~k~It~pf~~~~~ 218 (942)
T KOG0973|consen 144 LVSVSLDNSVIIWNAKTFELLKVL--RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWG---IEKSITKPFEESPL 218 (942)
T ss_pred EEEecccceEEEEccccceeeeee--ecccccccceEECCccCeeeeecCCceEEEEEcccce---eeEeeccchhhCCC
Confidence 999999999999999999755555 7899999999999999999999999999999955422 344441 122
Q ss_pred CcCEEEEEEcCCCcEEEEeeC----CCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCC----
Q 016982 144 DSSVTSVAWHPNNVFLATTST----DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPS---- 215 (379)
Q Consensus 144 ~~~v~~~~~~p~~~~l~~~~~----d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---- 215 (379)
...+..+.|+|||++|++... -..+.|.+ ..+.+.-..+-+|.+++..+.|+|.
T Consensus 219 ~T~f~RlSWSPDG~~las~nA~n~~~~~~~Iie------------------R~tWk~~~~LvGH~~p~evvrFnP~lfe~ 280 (942)
T KOG0973|consen 219 TTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIE------------------RGTWKVDKDLVGHSAPVEVVRFNPKLFER 280 (942)
T ss_pred cceeeecccCCCcCeecchhhccCCcceeEEEe------------------cCCceeeeeeecCCCceEEEEeChHHhcc
Confidence 346789999999999998653 33567776 3566777888999999999999982
Q ss_pred -CC------------EEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCc-EEEEEeCCCeEEEEecCC
Q 016982 216 -GN------------TLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKM-VIGVGFDCNPMVFAADET 278 (379)
Q Consensus 216 -~~------------~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~d~~~~i~~~~~~ 278 (379)
.+ .+|+|+.|++|.||.....+++.-.....+..|..++|+|||. +++++.||++.++.+.+.
T Consensus 281 ~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 281 NNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred ccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 11 5788999999999998777765444444578899999999997 556999999999987653
No 76
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.7e-29 Score=184.19 Aligned_cols=292 Identities=16% Similarity=0.120 Sum_probs=219.7
Q ss_pred eccCcceeEEEeCCCCcEEEEEecCCeEEEEEecC------C----c---eEEEEEeccCCCceEEEEEcCCCCEEEEEe
Q 016982 7 HQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQ------E----K---WEKLHVLQKHDQIVSGIDWSVRSNRIVTVS 73 (379)
Q Consensus 7 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~------~----~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 73 (379)
..-...|.+++|+|.|.+.|+|++..+++|..... . + ......-+.|.+.|.|.+|+|+|++|++|+
T Consensus 29 l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgs 108 (350)
T KOG0641|consen 29 LEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGS 108 (350)
T ss_pred ecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecC
Confidence 34467899999999999999999999988865421 0 0 112233456889999999999999999999
Q ss_pred CCCeEEEEeccCCcee---eeEEeecCCCceeEEEECCC----CCEEEEEeC-CCeEEEEEeecCCceeEEEEEeecCCc
Q 016982 74 HDRNSYVWNQEGSEWV---PTLVILRLNRAALCVQWSPK----ENKFAVGSG-AKTVCICYYEQENNWWVSKLIRKRHDS 145 (379)
Q Consensus 74 ~d~~i~vw~~~~~~~~---~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~~~~ 145 (379)
+|++|++...+...+. ..+++.-|.+.|..++|-.+ +..|++++. |..|++-|...++. ...+ .+|.+
T Consensus 109 ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~---~~a~-sghtg 184 (350)
T KOG0641|consen 109 NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQG---FHAL-SGHTG 184 (350)
T ss_pred CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCc---ceee-cCCcc
Confidence 9999999876644321 23455668999999999653 456666554 55666666666653 4445 78999
Q ss_pred CEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeec--C-----CcceEEEEECCCCCE
Q 016982 146 SVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDL--S-----FSWAFGVKWSPSGNT 218 (379)
Q Consensus 146 ~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~v~~~~~sp~~~~ 218 (379)
.|.++ ++-++-.+++|+.|.+|++||+ +...++.++.. | ...|.+++..|.|++
T Consensus 185 hilal-yswn~~m~~sgsqdktirfwdl------------------rv~~~v~~l~~~~~~~glessavaav~vdpsgrl 245 (350)
T KOG0641|consen 185 HILAL-YSWNGAMFASGSQDKTIRFWDL------------------RVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRL 245 (350)
T ss_pred cEEEE-EEecCcEEEccCCCceEEEEee------------------eccceeeeccCcccCCCcccceeEEEEECCCcce
Confidence 98877 3447889999999999999997 44555555421 1 356899999999999
Q ss_pred EEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCC
Q 016982 219 LAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGP 297 (379)
Q Consensus 219 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (379)
|++|-.|....+||++.+. .++.+..|...|.++.|+|...++. +++|..|++-++.+.-.-++
T Consensus 246 l~sg~~dssc~lydirg~r-~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el-------------- 310 (350)
T KOG0641|consen 246 LASGHADSSCMLYDIRGGR-MIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHEL-------------- 310 (350)
T ss_pred eeeccCCCceEEEEeeCCc-eeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcC--------------
Confidence 9999999999999999987 4588889999999999999887766 78898888766543210010
Q ss_pred ccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCC
Q 016982 298 KYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLE 369 (379)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~ 369 (379)
... ....|.+.+..+.|++.+ --|++.+.|.++-+|-++
T Consensus 311 ----------~~~------------------vv~ehkdk~i~~rwh~~d-----~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 311 ----------PIM------------------VVAEHKDKAIQCRWHPQD-----FSFISSSADKTATLWALN 349 (350)
T ss_pred ----------ceE------------------EEEeccCceEEEEecCcc-----ceeeeccCcceEEEeccC
Confidence 000 124588889999977555 468899999999999764
No 77
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=6.8e-31 Score=206.91 Aligned_cols=252 Identities=16% Similarity=0.206 Sum_probs=207.2
Q ss_pred cceeccCcceeEEEeCCC---CcEEEEEecCCeEEEEEecCCce--EEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeE
Q 016982 4 IAVHQFAQCITCHAWSPD---HAMVAFCPNNNEVHIYKLIQEKW--EKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNS 78 (379)
Q Consensus 4 ~~~~~~~~~i~~~~~s~~---~~~l~~~~~dg~i~i~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 78 (379)
.++.+|.++|.+++|-.. ...|++++.|.++++|..+.+.. +.+..-.||...|.+++..++|..+++|+.|.+|
T Consensus 138 ~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~l 217 (423)
T KOG0313|consen 138 KTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTML 217 (423)
T ss_pred EEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeeccccee
Confidence 457899999998888432 24699999999999999987632 2333345999999999999999999999999999
Q ss_pred EEEeccC-----------------------CceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeE
Q 016982 79 YVWNQEG-----------------------SEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWV 135 (379)
Q Consensus 79 ~vw~~~~-----------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~ 135 (379)
.+|+... +...+...+.+|..+|.++.|++ ...+++++.|.+|+.||+.++..
T Consensus 218 kiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~--- 293 (423)
T KOG0313|consen 218 KIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGL--- 293 (423)
T ss_pred eecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccc---
Confidence 9999321 11234455678999999999998 67899999999999999999873
Q ss_pred EEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCC
Q 016982 136 SKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPS 215 (379)
Q Consensus 136 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 215 (379)
...+ .....+.+++.+|..++|++|+.|..+++||.+. ....-...++.+|...|.++.|+|.
T Consensus 294 ~~~~--~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~---------------~~gs~v~~s~~gH~nwVssvkwsp~ 356 (423)
T KOG0313|consen 294 KSTL--TTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRT---------------GDGSVVSQSLIGHKNWVSSVKWSPT 356 (423)
T ss_pred eeee--ecCcceeEeecccccceeeecCCCCceeecCCCC---------------CCCceeEEeeecchhhhhheecCCC
Confidence 3333 3556889999999999999999999999999631 1122345678999999999999995
Q ss_pred -CCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEec
Q 016982 216 -GNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAAD 276 (379)
Q Consensus 216 -~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~ 276 (379)
...|++++.|+++++||+++.+..+..+.+|+..|.++.|...+.++.+|.|.+++++...
T Consensus 357 ~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 357 NEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred CceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCceEEeccCcceEEEeccc
Confidence 5568899999999999999998667899999999999999876666678999999998754
No 78
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.8e-31 Score=224.79 Aligned_cols=243 Identities=17% Similarity=0.225 Sum_probs=213.9
Q ss_pred cceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccC-----
Q 016982 11 QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEG----- 85 (379)
Q Consensus 11 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~----- 85 (379)
+-+.|..|-|.++++++|...|.+.+||+... ..+.+.++|.+.|.+++.+||+..+++++.|.+|++||..-
T Consensus 413 ~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~--~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~ 490 (888)
T KOG0306|consen 413 GYILASKFVPGDRYIVLGTKNGELQVFDLASA--SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVP 490 (888)
T ss_pred ccEEEEEecCCCceEEEeccCCceEEEEeehh--hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccC
Confidence 36778899999999999999999999999987 67778889999999999999999999999999999999641
Q ss_pred CceeeeEE-----eecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEE
Q 016982 86 SEWVPTLV-----ILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLA 160 (379)
Q Consensus 86 ~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 160 (379)
+.....+. .......|.|+++||||++|+++--|.++++|-+++-+ ..-.+ .+|.-||.|+..+||++.++
T Consensus 491 gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlK---FflsL-YGHkLPV~smDIS~DSkliv 566 (888)
T KOG0306|consen 491 GTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLK---FFLSL-YGHKLPVLSMDISPDSKLIV 566 (888)
T ss_pred cccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEeccee---eeeee-cccccceeEEeccCCcCeEE
Confidence 21111111 12345789999999999999999999999999999876 34444 79999999999999999999
Q ss_pred EeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCcee
Q 016982 161 TTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA 240 (379)
Q Consensus 161 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~ 240 (379)
||+.|.+|++|-+ ..|.|.+++-+|...|.++.|-|....+++++.|+.|+-||-.+-. .+
T Consensus 567 TgSADKnVKiWGL------------------dFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe-~i 627 (888)
T KOG0306|consen 567 TGSADKNVKIWGL------------------DFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFE-EI 627 (888)
T ss_pred eccCCCceEEecc------------------ccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhh-hh
Confidence 9999999999986 7899999999999999999999999999999999999999977655 56
Q ss_pred eeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCC
Q 016982 241 QNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADET 278 (379)
Q Consensus 241 ~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~ 278 (379)
+.+.+|...|++++.+|+|.+++ ++.|.++++|.....
T Consensus 628 q~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde 666 (888)
T KOG0306|consen 628 QKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDE 666 (888)
T ss_pred eeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCc
Confidence 89999999999999999999888 678899999997654
No 79
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8e-31 Score=220.67 Aligned_cols=239 Identities=20% Similarity=0.254 Sum_probs=206.7
Q ss_pred CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEecc-CCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCce
Q 016982 10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQK-HDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEW 88 (379)
Q Consensus 10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~ 88 (379)
...|+++.|+++|.+||+|..+|.|.|||..+. +.+..+.+ |...|.+++|. +..+.+|+.|+.|..+|+...+.
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~--k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~ 292 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ--KKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQH 292 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhc--cccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchh
Confidence 789999999999999999999999999999886 67777888 99999999998 66899999999999999998875
Q ss_pred eeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCC-CcEEEEee--CC
Q 016982 89 VPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPN-NVFLATTS--TD 165 (379)
Q Consensus 89 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~--~d 165 (379)
... ....|...|..+.|++|++++|+|+.|+.+.|||..... ....+ ..|...|.+++|+|- ..+||+|+ .|
T Consensus 293 ~~~-~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~---p~~~~-~~H~aAVKA~awcP~q~~lLAsGGGs~D 367 (484)
T KOG0305|consen 293 VVS-TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE---PKFTF-TEHTAAVKALAWCPWQSGLLATGGGSAD 367 (484)
T ss_pred hhh-hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc---ccEEE-eccceeeeEeeeCCCccCceEEcCCCcc
Confidence 444 357899999999999999999999999999999995555 24445 799999999999995 47888865 59
Q ss_pred CeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEc--CCCeEEEEECCCCCceeeee
Q 016982 166 GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVG--HNSMIYFVDDVGPSPLAQNV 243 (379)
Q Consensus 166 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~ 243 (379)
+.|++||+ .++..+..+.. ...|.+|.|++..+-|+++. .++.|.||+..+.+ .+..+
T Consensus 368 ~~i~fwn~------------------~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~-~~~~l 427 (484)
T KOG0305|consen 368 RCIKFWNT------------------NTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMK-LVAEL 427 (484)
T ss_pred cEEEEEEc------------------CCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccc-eeeee
Confidence 99999997 67777777765 56799999999887777653 56789999998866 45888
Q ss_pred eeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecC
Q 016982 244 AFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADE 277 (379)
Q Consensus 244 ~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~ 277 (379)
.+|...|..++++|||..++ ++.|.++++|+.-+
T Consensus 428 ~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 428 LGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred cCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 99999999999999999887 77899999998654
No 80
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.5e-31 Score=213.50 Aligned_cols=239 Identities=13% Similarity=0.154 Sum_probs=199.6
Q ss_pred eeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCC-CEEEEEeCCCeEEEEecc
Q 016982 6 VHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRS-NRIVTVSHDRNSYVWNQE 84 (379)
Q Consensus 6 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~vw~~~ 84 (379)
+..+.+.|+++.|-.||++||+|...|.|+|||+.+. ..++.+.+|+.++..+.|+|++ ..+++|+.|+.+++||+.
T Consensus 64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r--~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s 141 (487)
T KOG0310|consen 64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR--VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLS 141 (487)
T ss_pred HHhhccceeEEEeecCCeEEEccCCcCcEEEeccccH--HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcC
Confidence 4556889999999999999999999999999996664 5678889999999999999977 467888899999999999
Q ss_pred CCceeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee
Q 016982 85 GSEWVPTLVILRLNRAALCVQWSP-KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS 163 (379)
Q Consensus 85 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 163 (379)
+... ...+.+|+..|.+.+|+| ++..+++|+.||.|++||.+.... .... ..|..+|..+.+-|.|..+++++
T Consensus 142 ~a~v--~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~--~v~e--lnhg~pVe~vl~lpsgs~iasAg 215 (487)
T KOG0310|consen 142 TAYV--QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS--RVVE--LNHGCPVESVLALPSGSLIASAG 215 (487)
T ss_pred CcEE--EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc--eeEE--ecCCCceeeEEEcCCCCEEEEcC
Confidence 8873 556689999999999999 456899999999999999998752 2222 58999999999999999999887
Q ss_pred CCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeee
Q 016982 164 TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNV 243 (379)
Q Consensus 164 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 243 (379)
...++|||+ ..-++.+..+..|...|+|+.+..++..|++++-|+.+++||+.+-+ .+..+
T Consensus 216 -Gn~vkVWDl-----------------~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~K-vv~s~ 276 (487)
T KOG0310|consen 216 -GNSVKVWDL-----------------TTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYK-VVHSW 276 (487)
T ss_pred -CCeEEEEEe-----------------cCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceE-EEEee
Confidence 457999998 23455555666699999999999999999999999999999965543 44555
Q ss_pred eeecCCeeeEEEecCCcEEEEEeCCCeEE
Q 016982 244 AFRDLPLRDVLFVSEKMVIGVGFDCNPMV 272 (379)
Q Consensus 244 ~~~~~~i~~~~~s~~~~~l~~~~d~~~~i 272 (379)
. ..++|.+++.+|+++.++.|..+.+..
T Consensus 277 ~-~~~pvLsiavs~dd~t~viGmsnGlv~ 304 (487)
T KOG0310|consen 277 K-YPGPVLSIAVSPDDQTVVIGMSNGLVS 304 (487)
T ss_pred e-cccceeeEEecCCCceEEEecccceee
Confidence 4 478999999999999888665544433
No 81
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.4e-31 Score=226.20 Aligned_cols=248 Identities=18% Similarity=0.252 Sum_probs=188.2
Q ss_pred EEEec-cCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccC--------------------------------C-------
Q 016982 47 LHVLQ-KHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEG--------------------------------S------- 86 (379)
Q Consensus 47 ~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~--------------------------------~------- 86 (379)
.+.+. .|.+.|.++.||+||+|||+|+.|+.|+||.+.. .
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 34455 8999999999999999999999999999998755 0
Q ss_pred -------------------ceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCE
Q 016982 87 -------------------EWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSV 147 (379)
Q Consensus 87 -------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v 147 (379)
...+...+.+|.+.|.++.|+.+ ++|++++.|++|++|++.... +.+.+ .|.+.|
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~---CL~~F--~HndfV 412 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKE---CLKVF--SHNDFV 412 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcc---eeeEE--ecCCee
Confidence 00011124678889999999965 589999999999999999777 56665 899999
Q ss_pred EEEEEcC-CCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCC
Q 016982 148 TSVAWHP-NNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNS 226 (379)
Q Consensus 148 ~~~~~~p-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~ 226 (379)
+|++|+| |.++|++|+-|+.|+||++ ...+ +.....-..-|++++|.|||++.+.|+.+|
T Consensus 413 TcVaFnPvDDryFiSGSLD~KvRiWsI------------------~d~~-Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G 473 (712)
T KOG0283|consen 413 TCVAFNPVDDRYFISGSLDGKVRLWSI------------------SDKK-VVDWNDLRDLITAVCYSPDGKGAVIGTFNG 473 (712)
T ss_pred EEEEecccCCCcEeecccccceEEeec------------------CcCe-eEeehhhhhhheeEEeccCCceEEEEEecc
Confidence 9999999 6699999999999999997 3333 333333347799999999999999999999
Q ss_pred eEEEEECCCCCceeeeeee--e------cCCeeeEEEecCC--cEEEEEeCCCeEEEEecCCCcEEEEEEecccccCCCC
Q 016982 227 MIYFVDDVGPSPLAQNVAF--R------DLPLRDVLFVSEK--MVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSG 296 (379)
Q Consensus 227 ~i~v~d~~~~~~~~~~~~~--~------~~~i~~~~~s~~~--~~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 296 (379)
.+++|+....+. ...... + ...|+++.|.|.. ++|+++.|..|+||+..+.....
T Consensus 474 ~C~fY~t~~lk~-~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~-------------- 538 (712)
T KOG0283|consen 474 YCRFYDTEGLKL-VSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVH-------------- 538 (712)
T ss_pred EEEEEEccCCeE-EEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhh--------------
Confidence 999999877542 222211 1 2369999999843 58999999999999975432211
Q ss_pred CccCCCcccccceeeccccccCccccccccccccccccc-ceeeeeeecccCCcccceEEEeecCceEEEEeCCC
Q 016982 297 PKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVN-CINCIVPLREAGSSRITRFTTSGLDGKIVTWDLES 370 (379)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~ 370 (379)
+| +|+.+ .-.--+-|+.|| ++|+++++|..|++|++..
T Consensus 539 ------------Kf--------------------KG~~n~~SQ~~Asfs~Dg----k~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 539 ------------KF--------------------KGFRNTSSQISASFSSDG----KHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred ------------hh--------------------cccccCCcceeeeEccCC----CEEEEeecCceEEEEeCCC
Confidence 11 12211 111122366666 9999999999999999854
No 82
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=6.5e-32 Score=201.34 Aligned_cols=247 Identities=13% Similarity=0.128 Sum_probs=213.0
Q ss_pred cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982 4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ 83 (379)
Q Consensus 4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~ 83 (379)
.++.+|.+.|+....+.+..+.|+++.|-+-++||.-++ ..++.+. |..-|.+++|+.|.++|++|+.++.+++||+
T Consensus 53 gtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tg--delhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdl 129 (334)
T KOG0278|consen 53 GTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTG--DELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDL 129 (334)
T ss_pred EeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhh--hhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhc
Confidence 467899999999999999999999999999999999887 6777776 7889999999999999999999999999999
Q ss_pred cCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee
Q 016982 84 EGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS 163 (379)
Q Consensus 84 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 163 (379)
+..+- +..++.+|.+.|..+.|....+.|++.+.|++|++||.+++. ..+.+ ....+|+++..+++|++|.+ .
T Consensus 130 n~p~A-pp~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt---~v~sL--~~~s~VtSlEvs~dG~ilTi-a 202 (334)
T KOG0278|consen 130 NRPKA-PPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGT---EVQSL--EFNSPVTSLEVSQDGRILTI-A 202 (334)
T ss_pred cCCCC-CchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCc---EEEEE--ecCCCCcceeeccCCCEEEE-e
Confidence 88763 334557899999999999989999999999999999999998 35555 45678999999999986655 4
Q ss_pred CCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeee
Q 016982 164 TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNV 243 (379)
Q Consensus 164 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 243 (379)
..+.|.+||. .+-..++.+.. ...|.+..++|+...+++|++|..++.||..++.++....
T Consensus 203 ~gssV~Fwda------------------ksf~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n 263 (334)
T KOG0278|consen 203 YGSSVKFWDA------------------KSFGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN 263 (334)
T ss_pred cCceeEEecc------------------ccccceeeccC-ccccccccccCCCceEEecCcceEEEEEeccCCceeeecc
Confidence 6778999996 55566666654 4568999999999999999999999999999998765545
Q ss_pred eeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCC
Q 016982 244 AFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETG 279 (379)
Q Consensus 244 ~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~ 279 (379)
++|.++|.++.|+|+|.+.+ ++.||++++|.....+
T Consensus 264 kgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 264 KGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred cCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 88999999999999999988 6689999999987654
No 83
>PTZ00420 coronin; Provisional
Probab=99.98 E-value=1.1e-28 Score=216.14 Aligned_cols=226 Identities=12% Similarity=0.105 Sum_probs=174.2
Q ss_pred EecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCC-CCEEEEEeCCCeEEEEeccCCce------eeeEEeecCCCc
Q 016982 28 CPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVR-SNRIVTVSHDRNSYVWNQEGSEW------VPTLVILRLNRA 100 (379)
Q Consensus 28 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~vw~~~~~~~------~~~~~~~~~~~~ 100 (379)
|+.++.|++|+.... ..+..+.+|.+.|.+++|+|+ +++|++|+.|++|++||+.++.. .+...+.+|...
T Consensus 50 GG~~gvI~L~~~~r~--~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~ 127 (568)
T PTZ00420 50 GGLIGAIRLENQMRK--PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKK 127 (568)
T ss_pred CCceeEEEeeecCCC--ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCc
Confidence 455788999988765 678889999999999999997 78999999999999999976421 112234678999
Q ss_pred eeEEEECCCCCE-EEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccc
Q 016982 101 ALCVQWSPKENK-FAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVD 179 (379)
Q Consensus 101 v~~~~~~~~~~~-l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~ 179 (379)
|.+++|+|++.. +++++.|+.|++||++++. ....+ .|...|.+++|+|+|++|++++.|+.|+|||+
T Consensus 128 V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~---~~~~i--~~~~~V~SlswspdG~lLat~s~D~~IrIwD~------ 196 (568)
T PTZ00420 128 ISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK---RAFQI--NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDP------ 196 (568)
T ss_pred EEEEEECCCCCeEEEEEeCCCeEEEEECCCCc---EEEEE--ecCCcEEEEEECCCCCEEEEEecCCEEEEEEC------
Confidence 999999998875 5788999999999999876 23333 35678999999999999999999999999997
Q ss_pred cccccCCCccCCcccceEEEeecCCcceE-----EEEECCCCCEEEEEcCCC----eEEEEECCCCCceeeeeeeec--C
Q 016982 180 IKEKKEGTSSDTKFGEQILQLDLSFSWAF-----GVKWSPSGNTLAYVGHNS----MIYFVDDVGPSPLAQNVAFRD--L 248 (379)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-----~~~~sp~~~~l~~~~~d~----~i~v~d~~~~~~~~~~~~~~~--~ 248 (379)
++++.+.++.+|.+.+. ...|++++.+|++++.++ .|+|||++.....+.....+. +
T Consensus 197 ------------Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~ 264 (568)
T PTZ00420 197 ------------RKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASA 264 (568)
T ss_pred ------------CCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCcc
Confidence 66778888888876543 234568999999887664 799999996544444443222 2
Q ss_pred CeeeEEEecCCcEEE-EEeCCCeEEEEecCC
Q 016982 249 PLRDVLFVSEKMVIG-VGFDCNPMVFAADET 278 (379)
Q Consensus 249 ~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~ 278 (379)
.+......++|.+++ ++.|+.+++|+....
T Consensus 265 ~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 265 PLIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred ceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 222233344577665 568999999998754
No 84
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.98 E-value=1.2e-29 Score=214.54 Aligned_cols=319 Identities=17% Similarity=0.251 Sum_probs=236.3
Q ss_pred cceeccCcceeEEEeCCCCc---EEEEEecCCeEEEEEecCCc-------------------eEEE----------EEec
Q 016982 4 IAVHQFAQCITCHAWSPDHA---MVAFCPNNNEVHIYKLIQEK-------------------WEKL----------HVLQ 51 (379)
Q Consensus 4 ~~~~~~~~~i~~~~~s~~~~---~l~~~~~dg~i~i~~~~~~~-------------------~~~~----------~~~~ 51 (379)
..+.+|.+.|.+++|...+. +||++++|..|+||.+.-.. +... ..+.
T Consensus 185 ~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~ 264 (764)
T KOG1063|consen 185 AELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLM 264 (764)
T ss_pred EEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhc
Confidence 45789999999999987543 88999999999999985321 0111 2245
Q ss_pred cCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCC--ceeeeEEee---cCCCceeEEEECCCCCEEEEEeCCCeEEEEE
Q 016982 52 KHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGS--EWVPTLVIL---RLNRAALCVQWSPKENKFAVGSGAKTVCICY 126 (379)
Q Consensus 52 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~--~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~ 126 (379)
+|.+.|.++.|+|.+..|++++.|.++.+|...+. -+.....+. +........-|+|+++.+++-+..|..++|-
T Consensus 265 GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWk 344 (764)
T KOG1063|consen 265 GHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWK 344 (764)
T ss_pred CcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEe
Confidence 89999999999999999999999999999987654 344444332 2335678999999999999999999999998
Q ss_pred eecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEecccccccc--------------------------
Q 016982 127 YEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDI-------------------------- 180 (379)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~-------------------------- 180 (379)
......|.....+ .+|...|.+++|+|.|.+|++.+.|-+-|+|-...++.+.
T Consensus 345 t~d~~~w~~~~~i-SGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FV 423 (764)
T KOG1063|consen 345 TKDKTFWTQEPVI-SGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFV 423 (764)
T ss_pred ccCccceeecccc-ccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceee
Confidence 4444445444445 8999999999999999999999999888887533100000
Q ss_pred --------cc--------------------------c-----------cCCCccCCcc----------------------
Q 016982 181 --------KE--------------------------K-----------KEGTSSDTKF---------------------- 193 (379)
Q Consensus 181 --------~~--------------------------~-----------~~~~~~~~~~---------------------- 193 (379)
|. . ++.......+
T Consensus 424 SgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~eP 503 (764)
T KOG1063|consen 424 SGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEP 503 (764)
T ss_pred ecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCC
Confidence 00 0 0000000000
Q ss_pred -----------cceEEEeecCCcceEEEEECCCCCEEEEEcCC-----CeEEEEECCCCCceeeeeeeecCCeeeEEEec
Q 016982 194 -----------GEQILQLDLSFSWAFGVKWSPSGNTLAYVGHN-----SMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVS 257 (379)
Q Consensus 194 -----------~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~ 257 (379)
...++.+.+|...|.+++.+|+|+++|+++.. ..|++|+..+-.+. +.+.+|...|+.++|||
T Consensus 504 P~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~-~~L~~HsLTVT~l~FSp 582 (764)
T KOG1063|consen 504 PTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQV-QELEGHSLTVTRLAFSP 582 (764)
T ss_pred ChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhh-heecccceEEEEEEECC
Confidence 01122456788889999999999999998743 46999998876654 68899999999999999
Q ss_pred CCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccc
Q 016982 258 EKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNC 336 (379)
Q Consensus 258 ~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 336 (379)
||++|+ ++.|..+.+|+..++..-.+ +|. ....|..-
T Consensus 583 dg~~LLsvsRDRt~sl~~~~~~~~~e~-------------------------~fa-----------------~~k~HtRI 620 (764)
T KOG1063|consen 583 DGRYLLSVSRDRTVSLYEVQEDIKDEF-------------------------RFA-----------------CLKAHTRI 620 (764)
T ss_pred CCcEEEEeecCceEEeeeeecccchhh-------------------------hhc-----------------cccccceE
Confidence 999887 78899998887533211110 011 23679999
Q ss_pred eeeeeeecccCCcccceEEEeecCceEEEEeCCCc
Q 016982 337 INCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQ 371 (379)
Q Consensus 337 v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~ 371 (379)
|.++. |+|++ .+|||+|.|.+|++|...+.
T Consensus 621 IWdcs-W~pde----~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 621 IWDCS-WSPDE----KYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred EEEcc-cCccc----ceeEEecCCceEEEEeccCc
Confidence 99999 77776 88999999999999999876
No 85
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.98 E-value=6.9e-30 Score=215.93 Aligned_cols=278 Identities=13% Similarity=0.133 Sum_probs=227.5
Q ss_pred cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEE-EEEcC-CCCEEEEEeCCCeEEEE
Q 016982 4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSG-IDWSV-RSNRIVTVSHDRNSYVW 81 (379)
Q Consensus 4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~-~~~~~-~~~~l~~~~~d~~i~vw 81 (379)
..+.+|...|..+++.+ +..++++++||++++|+-..+++.....+.+|.+-|.. +++.+ ++-.|++|+.|.++.+|
T Consensus 8 ~~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~ 86 (745)
T KOG0301|consen 8 HELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVF 86 (745)
T ss_pred EEeccCccchheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEE
Confidence 35789999999999875 45788999999999999988877777888888887776 77775 44569999999999999
Q ss_pred eccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEE
Q 016982 82 NQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLAT 161 (379)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~ 161 (379)
...+..+ ...+.+|+..|.+++...++. +++|+.|.++++|-...-. ..+ .+|+..|+++..-|.+ .++|
T Consensus 87 ~~~~~~P--~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~-----~~l-~gH~asVWAv~~l~e~-~~vT 156 (745)
T KOG0301|consen 87 KLSQAEP--LYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELV-----YSL-QGHTASVWAVASLPEN-TYVT 156 (745)
T ss_pred ecCCCCc--hhhhhccccceeeeecCCcCc-eEecccccceEEecchhhh-----ccc-CCcchheeeeeecCCC-cEEe
Confidence 9988874 445589999999999888887 9999999999999766533 335 8999999999999988 8999
Q ss_pred eeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceee
Q 016982 162 TSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQ 241 (379)
Q Consensus 162 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~ 241 (379)
|+.|.+|++|. .++.+++|.+|...|+.+++-|++. +++++.||.|++|++.. . ++.
T Consensus 157 gsaDKtIklWk--------------------~~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~~g-e-~l~ 213 (745)
T KOG0301|consen 157 GSADKTIKLWK--------------------GGTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDLDG-E-VLL 213 (745)
T ss_pred ccCcceeeecc--------------------CCchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEeccC-c-eee
Confidence 99999999995 4888999999999999999998765 66899999999999843 3 557
Q ss_pred eeeeecCCeeeEEEecCCcE-EEEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcc
Q 016982 242 NVAFRDLPLRDVLFVSEKMV-IGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGN 320 (379)
Q Consensus 242 ~~~~~~~~i~~~~~s~~~~~-l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (379)
.+.+|..-++++...+++.. +.+|.|+++++|..+.. .+.+.
T Consensus 214 ~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~--~q~I~----------------------------------- 256 (745)
T KOG0301|consen 214 EMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDEC--VQVIT----------------------------------- 256 (745)
T ss_pred eeeccceEEEEEEecCCCCeEEEecCCceEEEeecCce--EEEEe-----------------------------------
Confidence 88899999999996665554 55899999999986621 12211
Q ss_pred cccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCC
Q 016982 321 DAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLE 369 (379)
Q Consensus 321 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~ 369 (379)
-....|+++.++... -|++|+.||.||||-..
T Consensus 257 -----------lPttsiWsa~~L~Ng------DIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 257 -----------LPTTSIWSAKVLLNG------DIVVGGSDGRVRVFTVD 288 (745)
T ss_pred -----------cCccceEEEEEeeCC------CEEEeccCceEEEEEec
Confidence 122378888855333 38899999999999876
No 86
>PTZ00420 coronin; Provisional
Probab=99.98 E-value=4.9e-29 Score=218.43 Aligned_cols=230 Identities=12% Similarity=0.184 Sum_probs=176.4
Q ss_pred cceeccCcceeEEEeCCC-CcEEEEEecCCeEEEEEecCCce------EEEEEeccCCCceEEEEEcCCCCE-EEEEeCC
Q 016982 4 IAVHQFAQCITCHAWSPD-HAMVAFCPNNNEVHIYKLIQEKW------EKLHVLQKHDQIVSGIDWSVRSNR-IVTVSHD 75 (379)
Q Consensus 4 ~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i~~~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d 75 (379)
..+.+|.++|.+++|+|+ +++||+|+.|+.|+|||+.++.. .++..+.+|...|.+++|+|++.. |++++.|
T Consensus 68 ~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~D 147 (568)
T PTZ00420 68 IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFD 147 (568)
T ss_pred EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCC
Confidence 356789999999999996 78999999999999999975421 244567899999999999999875 5789999
Q ss_pred CeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEE-----E
Q 016982 76 RNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTS-----V 150 (379)
Q Consensus 76 ~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~-----~ 150 (379)
++|++||+.+++....+ .+...|.+++|+|+|++|++++.|+.|++||++++. ....+ .+|.+.+.. .
T Consensus 148 gtIrIWDl~tg~~~~~i---~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~---~i~tl-~gH~g~~~s~~v~~~ 220 (568)
T PTZ00420 148 SFVNIWDIENEKRAFQI---NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE---IASSF-HIHDGGKNTKNIWID 220 (568)
T ss_pred CeEEEEECCCCcEEEEE---ecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCc---EEEEE-ecccCCceeEEEEee
Confidence 99999999998754433 356789999999999999999999999999999876 34555 678765433 3
Q ss_pred EEcCCCcEEEEeeCCC----eEEEEeccccccccccccCCCccCCcccceEEEee--cCCcceEEEEECCCCCEEEEEcC
Q 016982 151 AWHPNNVFLATTSTDG----KCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD--LSFSWAFGVKWSPSGNTLAYVGH 224 (379)
Q Consensus 151 ~~~p~~~~l~~~~~d~----~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~ 224 (379)
.|++++.+|++++.++ .|+|||++ ...+++..+. .+.+.+......++|.++++|+.
T Consensus 221 ~fs~d~~~IlTtG~d~~~~R~VkLWDlr-----------------~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkG 283 (568)
T PTZ00420 221 GLGGDDNYILSTGFSKNNMREMKLWDLK-----------------NTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKG 283 (568)
T ss_pred eEcCCCCEEEEEEcCCCCccEEEEEECC-----------------CCCCceEEEEecCCccceEEeeeCCCCCEEEEEEC
Confidence 3558888999887764 79999972 2344554443 33333333444556899999999
Q ss_pred CCeEEEEECCCCCceeeeee--eecCCeeeEEEecCC
Q 016982 225 NSMIYFVDDVGPSPLAQNVA--FRDLPLRDVLFVSEK 259 (379)
Q Consensus 225 d~~i~v~d~~~~~~~~~~~~--~~~~~i~~~~~s~~~ 259 (379)
|+.|++|++..+. + ..+. .+..+..+++|.|..
T Consensus 284 D~tIr~~e~~~~~-~-~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 284 DGNCRYYQHSLGS-I-RKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred CCeEEEEEccCCc-E-EeecccccCCCccceEEcccc
Confidence 9999999997653 1 2222 245778899999953
No 87
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.98 E-value=2.6e-30 Score=208.29 Aligned_cols=266 Identities=16% Similarity=0.224 Sum_probs=207.0
Q ss_pred ccCCCceEEEEEcCCC-CEEEEEeCCCeEEEEeccCC--------ceeeeEEeecCCCceeEEEECCC-CCEEEEEeCCC
Q 016982 51 QKHDQIVSGIDWSVRS-NRIVTVSHDRNSYVWNQEGS--------EWVPTLVILRLNRAALCVQWSPK-ENKFAVGSGAK 120 (379)
Q Consensus 51 ~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~vw~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~ 120 (379)
..|.+.|+.+.+.|+. ..+++.+..+.+.|||.... ++.+.+.+.+|...-+.++|++. .-.+++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 4488999999999987 45677788899999998643 34455577888888899999994 45789999999
Q ss_pred eEEEEEeecCCc----eeEEEEEeecCCcCEEEEEEcCCC-cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccc
Q 016982 121 TVCICYYEQENN----WWVSKLIRKRHDSSVTSVAWHPNN-VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGE 195 (379)
Q Consensus 121 ~v~i~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 195 (379)
.|++||+..... ......+ .+|...|..++|+|.. .+|++++.|+.+.|||++. .+.+
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~-~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~----------------~~~~ 263 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIF-SGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRS----------------NTSK 263 (422)
T ss_pred cEEEEeccccccCCccccceEEe-ecCCcceehhhccccchhhheeecCCCeEEEEEcCC----------------CCCC
Confidence 999999986553 1223334 8999999999999965 7889999999999999721 1455
Q ss_pred eEEEeecCCcceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCC-cEEE-EEeCCCeEE
Q 016982 196 QILQLDLSFSWAFGVKWSP-SGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEK-MVIG-VGFDCNPMV 272 (379)
Q Consensus 196 ~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~-~~~d~~~~i 272 (379)
+.....+|.+.|++++|+| ++..||+|+.|++|++||+++....+..+.+|...|..+.|+|.. ..|| +|.|+.+.+
T Consensus 264 ~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~v 343 (422)
T KOG0264|consen 264 PSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNV 343 (422)
T ss_pred CcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEE
Confidence 6667788999999999999 677889999999999999999888889999999999999999965 4666 778999999
Q ss_pred EEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccc
Q 016982 273 FAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRIT 352 (379)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 352 (379)
|++...+.-+. .+...... +. -.| +..||...|..+. +.|.. | .
T Consensus 344 WDls~ig~eq~---~eda~dgp----------pE-llF------------------~HgGH~~kV~Dfs-Wnp~e-P--W 387 (422)
T KOG0264|consen 344 WDLSRIGEEQS---PEDAEDGP----------PE-LLF------------------IHGGHTAKVSDFS-WNPNE-P--W 387 (422)
T ss_pred EeccccccccC---hhhhccCC----------cc-eeE------------------EecCccccccccc-CCCCC-C--e
Confidence 99775431111 00000000 00 012 4579999999999 55554 3 7
Q ss_pred eEEEeecCceEEEEeCC
Q 016982 353 RFTTSGLDGKIVTWDLE 369 (379)
Q Consensus 353 ~l~t~~~Dg~v~iW~~~ 369 (379)
.|+|+++|+.+.||++.
T Consensus 388 ~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 388 TIASVAEDNILQIWQMA 404 (422)
T ss_pred EEEEecCCceEEEeecc
Confidence 99999999999999987
No 88
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=9.8e-31 Score=208.26 Aligned_cols=245 Identities=12% Similarity=0.136 Sum_probs=199.4
Q ss_pred ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEec-cCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982 5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQ-KHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ 83 (379)
Q Consensus 5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~ 83 (379)
++.+|..+|..+.||||.++|++++.+..+.+||+.++ ...+.+. +|...+.+++|.|||..+++|+.|+++..||+
T Consensus 264 tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tg--d~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdl 341 (519)
T KOG0293|consen 264 TLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTG--DLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDL 341 (519)
T ss_pred eeecccCceEEEEECCCCCeEEecCchHheeeccCCcc--hhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecC
Confidence 56789999999999999999999999999999999998 4444433 24578999999999999999999999999999
Q ss_pred cCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee
Q 016982 84 EGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS 163 (379)
Q Consensus 84 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 163 (379)
+.... ..... -....|.+++..+||+++++.+.|..+++++.++... ... .....+|++++.+.+++++++.-
T Consensus 342 Dgn~~-~~W~g-vr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d---r~l--ise~~~its~~iS~d~k~~LvnL 414 (519)
T KOG0293|consen 342 DGNIL-GNWEG-VRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD---RGL--ISEEQPITSFSISKDGKLALVNL 414 (519)
T ss_pred Ccchh-hcccc-cccceeEEEEEcCCCcEEEEEecccceeeechhhhhh---hcc--ccccCceeEEEEcCCCcEEEEEc
Confidence 87641 22211 1235699999999999999999999999999887752 222 35567899999999999999999
Q ss_pred CCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcc--eEEEEECC-CCCEEEEEcCCCeEEEEECCCCCcee
Q 016982 164 TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSW--AFGVKWSP-SGNTLAYVGHNSMIYFVDDVGPSPLA 240 (379)
Q Consensus 164 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~sp-~~~~l~~~~~d~~i~v~d~~~~~~~~ 240 (379)
.+..+++||+ +....+..+.+|... +..-+|.- +..++++|++|+.|+||+..+++ ++
T Consensus 415 ~~qei~LWDl------------------~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgk-ll 475 (519)
T KOG0293|consen 415 QDQEIHLWDL------------------EENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGK-LL 475 (519)
T ss_pred ccCeeEEeec------------------chhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCc-ee
Confidence 9999999998 445566666666542 34445554 56899999999999999988877 56
Q ss_pred eeeeeecCCeeeEEEecCC-cEEE-EEeCCCeEEEEecC
Q 016982 241 QNVAFRDLPLRDVLFVSEK-MVIG-VGFDCNPMVFAADE 277 (379)
Q Consensus 241 ~~~~~~~~~i~~~~~s~~~-~~l~-~~~d~~~~i~~~~~ 277 (379)
..+.+|...|++++|+|.. .++| ++.|++|+||....
T Consensus 476 ~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 476 AVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred EeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 9999999999999999955 5666 77899999998653
No 89
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.2e-29 Score=192.39 Aligned_cols=269 Identities=18% Similarity=0.225 Sum_probs=206.6
Q ss_pred EEEEEecCCeEEEEEecCC----------ceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEE
Q 016982 24 MVAFCPNNNEVHIYKLIQE----------KWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLV 93 (379)
Q Consensus 24 ~l~~~~~dg~i~i~~~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~ 93 (379)
.|++|++...|.=+++... .+.++..+..|.++|++++.+ +.++++|+.|.+|+|||+........+
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~l- 79 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGIL- 79 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcce-
Confidence 4677888777777776432 134466778999999999997 889999999999999999988755544
Q ss_pred eecCCCceeEEEECCCCC--EEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEE
Q 016982 94 ILRLNRAALCVQWSPKEN--KFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVF 171 (379)
Q Consensus 94 ~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~ 171 (379)
..|.+.|+++.|.++-. .|++|+.||.|.+|+... |.+...+ .+|.+.|+.++.+|.+++-++.+.|+.+++|
T Consensus 80 -l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~---W~~~~sl-K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~W 154 (362)
T KOG0294|consen 80 -LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS---WELLKSL-KAHKGQVTDLSIHPSGKLALSVGGDQVLRTW 154 (362)
T ss_pred -eccccceEEEEecCCcchhheeeecCCCcEEEEEcCC---eEEeeee-cccccccceeEecCCCceEEEEcCCceeeee
Confidence 67899999999998764 899999999999998765 4477788 8999999999999999999999999999999
Q ss_pred eccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCee
Q 016982 172 STFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLR 251 (379)
Q Consensus 172 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~ 251 (379)
|+ -.++.-..... ....+.+.|+|.|.+++.++.+ .|-+|.+.+.. +...+.. ...+.
T Consensus 155 NL------------------V~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~-v~~~i~~-~~r~l 212 (362)
T KOG0294|consen 155 NL------------------VRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNAS-VFREIEN-PKRIL 212 (362)
T ss_pred hh------------------hcCccceeecc-CCcceeeEEcCCCCEEEEEecc-EEEEEecccHh-Hhhhhhc-cccce
Confidence 97 22332222222 1223459999999988887654 58899877654 2233322 24577
Q ss_pred eEEEecCCcEEEEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCccccccccccccc
Q 016982 252 DVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGG 331 (379)
Q Consensus 252 ~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (379)
++.|...+.+++++.++.+.+|+.+..... . .+.
T Consensus 213 ~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~--------------------------~--------------------~~~ 246 (362)
T KOG0294|consen 213 CATFLDGSELLVGGDNEWISLKDTDSDTPL--------------------------T--------------------EFL 246 (362)
T ss_pred eeeecCCceEEEecCCceEEEeccCCCccc--------------------------e--------------------eee
Confidence 788877777888888888888887652211 1 336
Q ss_pred ccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCc
Q 016982 332 THVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQ 371 (379)
Q Consensus 332 ~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~ 371 (379)
+|.++|.++.++.. |.+.+|+|+|.||.|++||++..
T Consensus 247 AH~~RVK~i~~~~~---~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 247 AHENRVKDIASYTN---PEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred cchhheeeeEEEec---CCceEEEEeccCceEEEEEcccc
Confidence 89999999996542 34589999999999999999865
No 90
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=3.9e-30 Score=207.30 Aligned_cols=252 Identities=17% Similarity=0.236 Sum_probs=203.4
Q ss_pred eccCcceeEEEeCCCC-cEEEEEecCCeEEEEEecCCc--------eEEEEEeccCCCceEEEEEcCCC-CEEEEEeCCC
Q 016982 7 HQFAQCITCHAWSPDH-AMVAFCPNNNEVHIYKLIQEK--------WEKLHVLQKHDQIVSGIDWSVRS-NRIVTVSHDR 76 (379)
Q Consensus 7 ~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~ 76 (379)
..|.+.|+.+.+.|.. ..+|+.+..+.|+|||..... ..+-..|.+|.+.-.++.|++.. -.|++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 5688999999999955 567778889999999987532 23334788999877899999865 4789999999
Q ss_pred eEEEEeccCCc-----eeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEE
Q 016982 77 NSYVWNQEGSE-----WVPTLVILRLNRAALCVQWSP-KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSV 150 (379)
Q Consensus 77 ~i~vw~~~~~~-----~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~ 150 (379)
+|++||+.... ..+...+.+|...|..++|++ +...|++++.|+.+.|||.++. ........ .+|.+.+.|+
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~-~ah~~~vn~~ 278 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-TSKPSHSV-KAHSAEVNCV 278 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-CCCCcccc-cccCCceeEE
Confidence 99999997543 234455678999999999999 5678999999999999999963 22234444 8999999999
Q ss_pred EEcCC-CcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCC-CCEEEEEcCCCeE
Q 016982 151 AWHPN-NVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPS-GNTLAYVGHNSMI 228 (379)
Q Consensus 151 ~~~p~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~i 228 (379)
+|+|- +..||+|+.|++|++||+ +...+++.++.+|...|.++.|+|+ ...|++++.|+.+
T Consensus 279 ~fnp~~~~ilAT~S~D~tV~LwDl-----------------RnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl 341 (422)
T KOG0264|consen 279 AFNPFNEFILATGSADKTVALWDL-----------------RNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRL 341 (422)
T ss_pred EeCCCCCceEEeccCCCcEEEeec-----------------hhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcE
Confidence 99995 578999999999999998 3667789999999999999999995 6678899999999
Q ss_pred EEEECCCCC-------------ceeeeeeeecCCeeeEEEecCCcEEE--EEeCCCeEEEEecC
Q 016982 229 YFVDDVGPS-------------PLAQNVAFRDLPLRDVLFVSEKMVIG--VGFDCNPMVFAADE 277 (379)
Q Consensus 229 ~v~d~~~~~-------------~~~~~~~~~~~~i~~~~~s~~~~~l~--~~~d~~~~i~~~~~ 277 (379)
.+||+..-. +++..-.+|...|..+.|+|+..+++ ++.|+.+.||...+
T Consensus 342 ~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 342 NVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred EEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 999986422 23344457888899999999877655 55777888887653
No 91
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=9.4e-31 Score=202.57 Aligned_cols=253 Identities=16% Similarity=0.211 Sum_probs=203.1
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEe------ecCCCceeEEEECCCCCEEEEEeCCCeEEEEEe
Q 016982 54 DQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVI------LRLNRAALCVQWSPKENKFAVGSGAKTVCICYY 127 (379)
Q Consensus 54 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~ 127 (379)
...+.|..|+|||++|++++.||.|.+||..+++....+.. .-+..+|.|++|+.|...+|+|+.||.|++|.+
T Consensus 213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri 292 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI 292 (508)
T ss_pred ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence 44677899999999999999999999999998865443322 235689999999999999999999999999999
Q ss_pred ecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcce
Q 016982 128 EQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWA 207 (379)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 207 (379)
.++. +.+.+...|...|+|+.|+.|+..+++++.|.++++.-+ +++++++.+.+|...|
T Consensus 293 ~tG~---ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGl------------------KSGK~LKEfrGHsSyv 351 (508)
T KOG0275|consen 293 ETGQ---CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGL------------------KSGKCLKEFRGHSSYV 351 (508)
T ss_pred ecch---HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecc------------------ccchhHHHhcCccccc
Confidence 9998 566775799999999999999999999999999999986 8899999999999999
Q ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeee--ecCCeeeEEEecCC--cEEEEEeCCCeEEEEecCCCcEEE
Q 016982 208 FGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAF--RDLPLRDVLFVSEK--MVIGVGFDCNPMVFAADETGIWTF 283 (379)
Q Consensus 208 ~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--~~~~i~~~~~s~~~--~~l~~~~d~~~~i~~~~~~~~~~~ 283 (379)
+...|.++|.++++++.||+|++|+..+.. +..+++. ...+|+++..-|.+ .++++...+++++.+..+ ++
T Consensus 352 n~a~ft~dG~~iisaSsDgtvkvW~~Ktte-C~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG----Qv 426 (508)
T KOG0275|consen 352 NEATFTDDGHHIISASSDGTVKVWHGKTTE-CLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG----QV 426 (508)
T ss_pred cceEEcCCCCeEEEecCCccEEEecCcchh-hhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc----eE
Confidence 999999999999999999999999988865 4455553 35678888888843 567787888888876554 22
Q ss_pred EEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceE
Q 016982 284 IKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKI 363 (379)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v 363 (379)
.+.+... + ..-.+-|.++ .+ |.|.++...++|+.+
T Consensus 427 VrsfsSG------k---------------------------------REgGdFi~~~--lS----pkGewiYcigED~vl 461 (508)
T KOG0275|consen 427 VRSFSSG------K---------------------------------REGGDFINAI--LS----PKGEWIYCIGEDGVL 461 (508)
T ss_pred EeeeccC------C---------------------------------ccCCceEEEE--ec----CCCcEEEEEccCcEE
Confidence 2221110 0 0112234443 44 445899999999999
Q ss_pred EEEeCCCccccccC
Q 016982 364 VTWDLESQEDLLNY 377 (379)
Q Consensus 364 ~iW~~~~~~~~~~~ 377 (379)
+-+...+|..-..+
T Consensus 462 YCF~~~sG~LE~tl 475 (508)
T KOG0275|consen 462 YCFSVLSGKLERTL 475 (508)
T ss_pred EEEEeecCceeeee
Confidence 99999887765443
No 92
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5e-28 Score=186.82 Aligned_cols=259 Identities=14% Similarity=0.151 Sum_probs=194.2
Q ss_pred EEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeC--CCeE
Q 016982 45 EKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSG--AKTV 122 (379)
Q Consensus 45 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~v 122 (379)
++.+.+......|+++.|+++|.++++++.|.++++||..++.....+ ..++-.+..++|....+.++.++. |.+|
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti--~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTI--NSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEe--ecccccccEEEEecCCceEEEccCCCCCce
Confidence 344556666779999999999999999999999999999999877766 446677888888777776776666 8899
Q ss_pred EEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeec
Q 016982 123 CICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDL 202 (379)
Q Consensus 123 ~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (379)
+..++..++ ..+.+ .+|...|..++.+|-+..+++++.|++|++||+ +..++...+..
T Consensus 83 ryLsl~dNk---ylRYF-~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDl------------------R~~~cqg~l~~ 140 (311)
T KOG1446|consen 83 RYLSLHDNK---YLRYF-PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDL------------------RVKKCQGLLNL 140 (311)
T ss_pred EEEEeecCc---eEEEc-CCCCceEEEEEecCCCCeEEecccCCeEEeeEe------------------cCCCCceEEec
Confidence 999999888 67777 999999999999999999999999999999997 45555555543
Q ss_pred CCcceEEEEECCCCCEEEEEcCCCeEEEEECCCC-Cceeeeee---eecCCeeeEEEecCCcEEEEEeCC-CeEEEEecC
Q 016982 203 SFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGP-SPLAQNVA---FRDLPLRDVLFVSEKMVIGVGFDC-NPMVFAADE 277 (379)
Q Consensus 203 ~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~d~-~~~i~~~~~ 277 (379)
... ...+|+|+|-++|++.....|++||++.- +.....+. ......+.+.|||||++|..+.+. .+++.+.-
T Consensus 141 ~~~--pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf- 217 (311)
T KOG1446|consen 141 SGR--PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAF- 217 (311)
T ss_pred CCC--cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEcc-
Confidence 333 34799999999999988889999999864 22223333 235668899999999988855554 44444432
Q ss_pred CCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEe
Q 016982 278 TGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTS 357 (379)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~ 357 (379)
.|. +....... .-.+.+..-+.|.||+ +++++|
T Consensus 218 ~G~--~~~tfs~~-----------------------------------------~~~~~~~~~a~ftPds----~Fvl~g 250 (311)
T KOG1446|consen 218 DGT--VKSTFSGY-----------------------------------------PNAGNLPLSATFTPDS----KFVLSG 250 (311)
T ss_pred CCc--EeeeEeec-----------------------------------------cCCCCcceeEEECCCC----cEEEEe
Confidence 221 11111000 0112233334587776 999999
Q ss_pred ecCceEEEEeCCCccccccC
Q 016982 358 GLDGKIVTWDLESQEDLLNY 377 (379)
Q Consensus 358 ~~Dg~v~iW~~~~~~~~~~~ 377 (379)
+.||+|.+|++++++.+..+
T Consensus 251 s~dg~i~vw~~~tg~~v~~~ 270 (311)
T KOG1446|consen 251 SDDGTIHVWNLETGKKVAVL 270 (311)
T ss_pred cCCCcEEEEEcCCCcEeeEe
Confidence 99999999999998776543
No 93
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=9.1e-30 Score=194.88 Aligned_cols=238 Identities=16% Similarity=0.202 Sum_probs=182.9
Q ss_pred CcceeEEEeCC-CCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCce
Q 016982 10 AQCITCHAWSP-DHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEW 88 (379)
Q Consensus 10 ~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~ 88 (379)
.+.|.+++||| ...+++.++.||+|++|+++......-.....|.++|.+++|+.||..+++|+.|+.+++||+.+++.
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~ 106 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV 106 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe
Confidence 57899999999 55677789999999999998742223355677999999999999999999999999999999999963
Q ss_pred eeeEEeecCCCceeEEEECCCCC--EEEEEeCCCeEEEEEeecCCceeEEE---------------------------EE
Q 016982 89 VPTLVILRLNRAALCVQWSPKEN--KFAVGSGAKTVCICYYEQENNWWVSK---------------------------LI 139 (379)
Q Consensus 89 ~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~~~~~~~~~~~~~---------------------------~~ 139 (379)
..+..|.++|.++.|-+... .|++|+.|++|+.||.+...+..... .+
T Consensus 107 ---~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL 183 (347)
T KOG0647|consen 107 ---SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNL 183 (347)
T ss_pred ---eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEc
Confidence 33467999999999987655 89999999999999998754210000 00
Q ss_pred ----------eecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCC-----
Q 016982 140 ----------RKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSF----- 204 (379)
Q Consensus 140 ----------~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 204 (379)
.....-.++|++..++....+.|+-+|.+.|..+. .+. .+.-.+|+.|.
T Consensus 184 ~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id-----~~~-----------~~~nFtFkCHR~~~~~ 247 (347)
T KOG0647|consen 184 ENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYID-----DPN-----------PKDNFTFKCHRSTNSV 247 (347)
T ss_pred CCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecC-----CCC-----------ccCceeEEEeccCCCC
Confidence 00112356788888888777888999998888772 110 01122333332
Q ss_pred ----cceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE--EEeC
Q 016982 205 ----SWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG--VGFD 267 (379)
Q Consensus 205 ----~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~--~~~d 267 (379)
..|++++|+|....|++++.||+..+||-....+ ++..+.|..+|++.+|+.+|.+++ .|+|
T Consensus 248 ~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~k-Lk~s~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 248 NDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTK-LKTSETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred CCceEEecceEeecccceEEEecCCceEEEecchhhhh-hhccCcCCCccceeEecCCCCEEEEEeecc
Confidence 3588999999988999999999999999666554 366677899999999999999887 5666
No 94
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3.5e-29 Score=202.15 Aligned_cols=289 Identities=11% Similarity=0.153 Sum_probs=222.5
Q ss_pred CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCC-EEEEEeCCCeEEEEeccCCce
Q 016982 10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSN-RIVTVSHDRNSYVWNQEGSEW 88 (379)
Q Consensus 10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~vw~~~~~~~ 88 (379)
.++|+++.|+|....|++++.|+.++||.++...-..++.+.-...+|.+..|.|+|. .+++++....++.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 5799999999999999999999999999998765566777666678999999999998 899999999999999999875
Q ss_pred eeeEEeecCC-CceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCe
Q 016982 89 VPTLVILRLN-RAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGK 167 (379)
Q Consensus 89 ~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~ 167 (379)
.+.-...++. ..+.....+|++++|+..+..|.|.+....++. ....+ ...+.|..++|+.+++.|+.++.+|.
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~e---li~s~--KieG~v~~~~fsSdsk~l~~~~~~Ge 367 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKE---LITSF--KIEGVVSDFTFSSDSKELLASGGTGE 367 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhh---hhhee--eeccEEeeEEEecCCcEEEEEcCCce
Confidence 5544433333 467788899999999999999999997776665 23333 45678999999999999999999999
Q ss_pred EEEEeccccccccccccCCCccCCcccceEEEeecCCc-ceEEEEECCCCCEEEEEcCCCeEEEEECCCC-----Cceee
Q 016982 168 CRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFS-WAFGVKWSPSGNTLAYVGHNSMIYFVDDVGP-----SPLAQ 241 (379)
Q Consensus 168 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~-----~~~~~ 241 (379)
|.+||+ +...+++.+....+ .-++++.++++.|||+|+..|.|.|||..+. .+++.
T Consensus 368 V~v~nl------------------~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik 429 (514)
T KOG2055|consen 368 VYVWNL------------------RQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIK 429 (514)
T ss_pred EEEEec------------------CCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchh
Confidence 999998 55677777754221 2367888899999999999999999996542 22335
Q ss_pred eeeeecCCeeeEEEecCCcEEEEEe---CCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccC
Q 016982 242 NVAFRDLPLRDVLFVSEKMVIGVGF---DCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGV 318 (379)
Q Consensus 242 ~~~~~~~~i~~~~~s~~~~~l~~~~---d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (379)
.+..-...|+++.|++|+++||.++ ++.+++....... + +..|-
T Consensus 430 ~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~T---V-----------------------FsNfP------- 476 (514)
T KOG2055|consen 430 TVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCT---V-----------------------FSNFP------- 476 (514)
T ss_pred hhhhhheeeeeeeeCcchhhhhhhhhccccceEEEecccee---e-----------------------eccCC-------
Confidence 5554567799999999999998433 3445544332211 0 00110
Q ss_pred cccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCC
Q 016982 319 GNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLE 369 (379)
Q Consensus 319 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~ 369 (379)
....--+.|+||+ |+|.+ .+||.|..+|+|.+|.+.
T Consensus 477 ----------~~n~~vg~vtc~a-FSP~s----G~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 477 ----------TSNTKVGHVTCMA-FSPNS----GYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ----------CCCCcccceEEEE-ecCCC----ceEEeecCCCceeeEeec
Confidence 0012345689999 88765 899999999999999874
No 95
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=3.3e-29 Score=188.01 Aligned_cols=254 Identities=16% Similarity=0.223 Sum_probs=207.5
Q ss_pred EEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCeEEEEE
Q 016982 48 HVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSP-KENKFAVGSGAKTVCICY 126 (379)
Q Consensus 48 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~~ 126 (379)
+.+++|...|.+++|+.+|..|++++.|+++.+|+++..+........+|...|-.++|+| ....+++++.|..|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 4567899999999999999999999999999999999887666667778999999999998 567999999999999999
Q ss_pred eecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcc
Q 016982 127 YEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSW 206 (379)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (379)
++..+. ...+ .....-.-+.|+|+|.+++.++.|..|.+.|. ++.+.....+. ...
T Consensus 94 ~r~~k~---~~~i--~~~~eni~i~wsp~g~~~~~~~kdD~it~id~------------------r~~~~~~~~~~-~~e 149 (313)
T KOG1407|consen 94 IRSGKC---TARI--ETKGENINITWSPDGEYIAVGNKDDRITFIDA------------------RTYKIVNEEQF-KFE 149 (313)
T ss_pred eccCcE---EEEe--eccCcceEEEEcCCCCEEEEecCcccEEEEEe------------------cccceeehhcc-cce
Confidence 999883 4443 33344456889999999999999999999996 34444433332 455
Q ss_pred eEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEE
Q 016982 207 AFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIK 285 (379)
Q Consensus 207 v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~ 285 (379)
+..+.|+-++.+++.....|.|.|.....-++ ++.++.|.....++.|+|+|+++| ++.|..+.+|+.++--+.+..
T Consensus 150 ~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkp-v~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i- 227 (313)
T KOG1407|consen 150 VNEISWNNSNDLFFLTNGLGCVEILSYPSLKP-VQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCI- 227 (313)
T ss_pred eeeeeecCCCCEEEEecCCceEEEEecccccc-ccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheee-
Confidence 78899998888888777889999999887664 589999999999999999999999 567778889887653322221
Q ss_pred EecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEE
Q 016982 286 FLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVT 365 (379)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~i 365 (379)
.-|.=+|..+. |+.+| ++||+||+|..|-|
T Consensus 228 ---------------------------------------------sRldwpVRTlS-FS~dg----~~lASaSEDh~IDI 257 (313)
T KOG1407|consen 228 ---------------------------------------------SRLDWPVRTLS-FSHDG----RMLASASEDHFIDI 257 (313)
T ss_pred ---------------------------------------------ccccCceEEEE-eccCc----ceeeccCccceEEe
Confidence 34566899999 98887 99999999999999
Q ss_pred EeCCCccccccC
Q 016982 366 WDLESQEDLLNY 377 (379)
Q Consensus 366 W~~~~~~~~~~~ 377 (379)
=++++|..+..+
T Consensus 258 A~vetGd~~~eI 269 (313)
T KOG1407|consen 258 AEVETGDRVWEI 269 (313)
T ss_pred EecccCCeEEEe
Confidence 888888776554
No 96
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=1.3e-28 Score=212.40 Aligned_cols=359 Identities=13% Similarity=0.095 Sum_probs=256.4
Q ss_pred cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCE-EEEEeCCCeEEEEe
Q 016982 4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNR-IVTVSHDRNSYVWN 82 (379)
Q Consensus 4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~vw~ 82 (379)
.++.++.+.|+++.-+|--..+|.|..+|+|.|++++.+ +.+..++...+.|++++|..||+. +++++..|.+.+||
T Consensus 196 ~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~d--kil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wD 273 (910)
T KOG1539|consen 196 YTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFD--KILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWD 273 (910)
T ss_pred EEecccccceeEeccCCcceEEEEeccCceEEEEEcccC--cEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEE
Confidence 456677899999999999999999999999999999998 788888865699999999999965 57777779999999
Q ss_pred ccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEc-CCCcEEEE
Q 016982 83 QEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWH-PNNVFLAT 161 (379)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~l~~ 161 (379)
++..+.+.... ..|.+.+....|-|....+++++.|+.+++|-++++...+-.-..+.+|..+..++.|. .++..+.+
T Consensus 274 Le~kkl~~v~~-nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ils 352 (910)
T KOG1539|consen 274 LEKKKLINVTR-NAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILS 352 (910)
T ss_pred cCCCeeeeeee-ccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEe
Confidence 99987665553 46889999999999999999999999999998886654221222237999999999998 57899999
Q ss_pred eeCCCeEEEEecccccccccccc---------CCCc-cCCccc--------------------------ceEEE------
Q 016982 162 TSTDGKCRVFSTFIKGVDIKEKK---------EGTS-SDTKFG--------------------------EQILQ------ 199 (379)
Q Consensus 162 ~~~d~~i~v~d~~~~~~~~~~~~---------~~~~-~~~~~~--------------------------~~~~~------ 199 (379)
++.|++.+.+++....+...... .... .....- ....+
T Consensus 353 a~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~ 432 (910)
T KOG1539|consen 353 AKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNK 432 (910)
T ss_pred cccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCc
Confidence 99999999888642111100000 0000 000000 00000
Q ss_pred ------e-----ecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeee---eeecCCeeeEEEecCCcEEE-E
Q 016982 200 ------L-----DLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNV---AFRDLPLRDVLFVSEKMVIG-V 264 (379)
Q Consensus 200 ------~-----~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~~i~~~~~s~~~~~l~-~ 264 (379)
+ +.....+++++.+++|++.+.|...|.|-+|+++++-.. ..+ +.|..+|++++...-++.++ +
T Consensus 433 ~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r-~sf~~~~ah~~~V~gla~D~~n~~~vsa 511 (910)
T KOG1539|consen 433 TSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHR-KSFGDSPAHKGEVTGLAVDGTNRLLVSA 511 (910)
T ss_pred ccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeee-cccccCccccCceeEEEecCCCceEEEc
Confidence 1 011245889999999999999999999999999987533 444 47899999999988777665 8
Q ss_pred EeCCCeEEEEecCCCcEEEEEEecccccC--CCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeee
Q 016982 265 GFDCNPMVFAADETGIWTFIKFLDERKTS--SSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVP 342 (379)
Q Consensus 265 ~~d~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 342 (379)
+.+|-+.+|+..... +...++..... ....+.+..+..+...| ..--....+....+.+.||.+.|++++
T Consensus 512 ~~~Gilkfw~f~~k~---l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf----~I~vvD~~t~kvvR~f~gh~nritd~~- 583 (910)
T KOG1539|consen 512 GADGILKFWDFKKKV---LKKSLRLGSSITGIVYHRVSDLLAIALDDF----SIRVVDVVTRKVVREFWGHGNRITDMT- 583 (910)
T ss_pred cCcceEEEEecCCcc---eeeeeccCCCcceeeeeehhhhhhhhcCce----eEEEEEchhhhhhHHhhccccceeeeE-
Confidence 899999999987653 22222111111 00011111111111111 001122234456667899999999999
Q ss_pred ecccCCcccceEEEeecCceEEEEeCCCccccccCC
Q 016982 343 LREAGSSRITRFTTSGLDGKIVTWDLESQEDLLNYH 378 (379)
Q Consensus 343 ~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~~~~~ 378 (379)
|++|| ++|++++.|++||+||+.++.++-.+.
T Consensus 584 FS~Dg----rWlisasmD~tIr~wDlpt~~lID~~~ 615 (910)
T KOG1539|consen 584 FSPDG----RWLISASMDSTIRTWDLPTGTLIDGLL 615 (910)
T ss_pred eCCCC----cEEEEeecCCcEEEEeccCcceeeeEe
Confidence 88877 999999999999999999998876543
No 97
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=5.4e-28 Score=178.10 Aligned_cols=246 Identities=18% Similarity=0.221 Sum_probs=197.5
Q ss_pred eccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCce---EEEEEeccCCCceEEEEEcCC----CCEEEEEe-CCCeE
Q 016982 7 HQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKW---EKLHVLQKHDQIVSGIDWSVR----SNRIVTVS-HDRNS 78 (379)
Q Consensus 7 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~-~d~~i 78 (379)
++|.+.|+|.+|+|+|.+||+|++|.+|++........ ..-..+.-|.+.|..++|..+ +..|++++ .|..|
T Consensus 86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~i 165 (350)
T KOG0641|consen 86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKI 165 (350)
T ss_pred cccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceE
Confidence 56899999999999999999999999999977654311 123456678999999999643 45677765 46677
Q ss_pred EEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEe-ecC-----CcCEEEEEE
Q 016982 79 YVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIR-KRH-----DSSVTSVAW 152 (379)
Q Consensus 79 ~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~-~~~-----~~~v~~~~~ 152 (379)
++-|...++... .+.+|.+-|.++ ++-++-++++|+.|.+|++||++-.. ....+. .-| ...|.+++.
T Consensus 166 y~tdc~~g~~~~--a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~---~v~~l~~~~~~~glessavaav~v 239 (350)
T KOG0641|consen 166 YITDCGRGQGFH--ALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNS---CVNTLDNDFHDGGLESSAVAAVAV 239 (350)
T ss_pred EEeecCCCCcce--eecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccc---eeeeccCcccCCCcccceeEEEEE
Confidence 777888887444 447899888876 44468899999999999999999876 334331 111 257899999
Q ss_pred cCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEE
Q 016982 153 HPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVD 232 (379)
Q Consensus 153 ~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d 232 (379)
.|.|++|++|-.|....+||+ +-+..++.+..|...|.++.|+|...|+++++.|..|++-|
T Consensus 240 dpsgrll~sg~~dssc~lydi------------------rg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltd 301 (350)
T KOG0641|consen 240 DPSGRLLASGHADSSCMLYDI------------------RGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTD 301 (350)
T ss_pred CCCcceeeeccCCCceEEEEe------------------eCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEee
Confidence 999999999999999999998 67889999999999999999999999999999999999999
Q ss_pred CCCCC---ceeeeeeeecCCeeeEEEecCC-cEEEEEeCCCeEEEEec
Q 016982 233 DVGPS---PLAQNVAFRDLPLRDVLFVSEK-MVIGVGFDCNPMVFAAD 276 (379)
Q Consensus 233 ~~~~~---~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~d~~~~i~~~~ 276 (379)
++... -.+..+..|...+..+.|.|.. .+|.++.|.++.+|.++
T Consensus 302 lqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 302 LQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred cccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 87642 1234455688888899999965 57778899999998764
No 98
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=1e-28 Score=197.92 Aligned_cols=246 Identities=14% Similarity=0.187 Sum_probs=203.8
Q ss_pred ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982 5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE 84 (379)
Q Consensus 5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~ 84 (379)
.+.+|.-.|+.+.|+|+...+++++.|..|++|..... ........|..+|+.+..+|.|.||++++.|++..+.|+.
T Consensus 256 ~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~--s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~ 333 (506)
T KOG0289|consen 256 TLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS--SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDIS 333 (506)
T ss_pred hccCcceEEEEEEeccchhheeecCCcceEEeeccccc--cCccccccccccceeeeeccCCcEEEEecCCceEEEEEcc
Confidence 46889999999999999999999999999999998876 4666778899999999999999999999999999999999
Q ss_pred CCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC
Q 016982 85 GSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST 164 (379)
Q Consensus 85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 164 (379)
++............-.+++.+|+|||..|.+|..|+.|++||+..... ...+ .+|.++|..++|+.+|.+|++++.
T Consensus 334 ~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~---~a~F-pght~~vk~i~FsENGY~Lat~ad 409 (506)
T KOG0289|consen 334 SGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTN---VAKF-PGHTGPVKAISFSENGYWLATAAD 409 (506)
T ss_pred CCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccc---cccC-CCCCCceeEEEeccCceEEEEEec
Confidence 998665554322335689999999999999999999999999988773 4455 789999999999999999999999
Q ss_pred CCeEEEEeccccccccccccCCCccCCcccceEEEeecC-CcceEEEEECCCCCEEEEEcCCCeEEEEECCCC-Cceeee
Q 016982 165 DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS-FSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGP-SPLAQN 242 (379)
Q Consensus 165 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~-~~~~~~ 242 (379)
|+.|++||+ +..+...++... ...+.++.|.+.|.+|+.++.|=.|++++-.+. -..+..
T Consensus 410 d~~V~lwDL------------------RKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~ 471 (506)
T KOG0289|consen 410 DGSVKLWDL------------------RKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKE 471 (506)
T ss_pred CCeEEEEEe------------------hhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeeh
Confidence 999999997 444455555432 236999999999999999988877777763332 223455
Q ss_pred eeeecCCeeeEEEecCCcEEE-EEeCCCeEEEE
Q 016982 243 VAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFA 274 (379)
Q Consensus 243 ~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~ 274 (379)
+..|.+..+.+.|....++++ ++.|..++++.
T Consensus 472 ~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 472 LADHSGLSTGVRFGEHAQYLASTSMDAILRLYA 504 (506)
T ss_pred hhhcccccceeeecccceEEeeccchhheEEee
Confidence 666777889999999889998 55666666554
No 99
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.97 E-value=1.8e-29 Score=206.01 Aligned_cols=285 Identities=12% Similarity=0.123 Sum_probs=227.9
Q ss_pred eeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCc-eEEEEEecc--CCCceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 016982 6 VHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEK-WEKLHVLQK--HDQIVSGIDWSVRSNRIVTVSHDRNSYVWN 82 (379)
Q Consensus 6 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~-~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~ 82 (379)
...|..-|.++.+|...+.+.+|+. |.|+|||+.... ..++..|.. ....|.++..+|||+.|++|+.-.++.|||
T Consensus 415 tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWD 493 (705)
T KOG0639|consen 415 TLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWD 493 (705)
T ss_pred hhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeee
Confidence 4568899999999999999999976 899999997531 133444432 356799999999999999999999999999
Q ss_pred ccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEe
Q 016982 83 QEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATT 162 (379)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~ 162 (379)
+.........++....-.+.+++.+||.+..++++.||.|.|||+.... +.+.+ .+|.+.+.||..++||..|-+|
T Consensus 494 LAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~---~Vrqf-qGhtDGascIdis~dGtklWTG 569 (705)
T KOG0639|consen 494 LAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT---LVRQF-QGHTDGASCIDISKDGTKLWTG 569 (705)
T ss_pred ccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce---eeecc-cCCCCCceeEEecCCCceeecC
Confidence 9877633333333334567889999999999999999999999999877 67777 8999999999999999999999
Q ss_pred eCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeee
Q 016982 163 STDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQN 242 (379)
Q Consensus 163 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 242 (379)
+-|.+|+.||+ +.+..+..... ...|.++..+|++.+|+.|-+++.+.|.......+ ..
T Consensus 570 GlDntvRcWDl------------------regrqlqqhdF-~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k--yq 628 (705)
T KOG0639|consen 570 GLDNTVRCWDL------------------REGRQLQQHDF-SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK--YQ 628 (705)
T ss_pred CCccceeehhh------------------hhhhhhhhhhh-hhhheecccCCCccceeeecccCcEEEEecCCccc--ee
Confidence 99999999997 44544444332 45699999999999999999999999888666543 55
Q ss_pred eeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCccc
Q 016982 243 VAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGND 321 (379)
Q Consensus 243 ~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (379)
+..|..-|.++.|.+.|++++ +|.|+-+..|....+. .+ |.
T Consensus 629 lhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGa--si--------------------------Fq---------- 670 (705)
T KOG0639|consen 629 LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA--SI--------------------------FQ---------- 670 (705)
T ss_pred ecccccEEEEEEecccCceeeecCchhhhhhccCcccc--ce--------------------------ee----------
Confidence 666889999999999999888 7888888887755332 11 10
Q ss_pred ccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeC
Q 016982 322 AVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDL 368 (379)
Q Consensus 322 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~ 368 (379)
..-...|.++. .+.+. ++|+|||.|....+|.+
T Consensus 671 ---------skE~SsVlsCD-IS~dd----kyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 671 ---------SKESSSVLSCD-ISFDD----KYIVTGSGDKKATVYEV 703 (705)
T ss_pred ---------ccccCcceeee-eccCc----eEEEecCCCcceEEEEE
Confidence 12445799999 66665 89999999998888865
No 100
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=9.8e-30 Score=213.53 Aligned_cols=251 Identities=12% Similarity=0.104 Sum_probs=206.0
Q ss_pred ccCccee---EEEeC-CCCcEEEEEecCCeEEEEEecCCce----EEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEE
Q 016982 8 QFAQCIT---CHAWS-PDHAMVAFCPNNNEVHIYKLIQEKW----EKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSY 79 (379)
Q Consensus 8 ~~~~~i~---~~~~s-~~~~~l~~~~~dg~i~i~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 79 (379)
+|...|. ++..+ |.+++|++|++||.|++|+...... .....++.|.+.|+.++..-+++.|++++.|-+|+
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK 98 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVK 98 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEE
Confidence 3444555 44554 4667899999999999999875422 24677899999999999999999999999999999
Q ss_pred EEeccCCceeeeEEeecCCCceeEEEE-CCCCCEEEEEeCCCeEEEEEeecCCc-------eeEEEEEeecCCcCEEEEE
Q 016982 80 VWNQEGSEWVPTLVILRLNRAALCVQW-SPKENKFAVGSGAKTVCICYYEQENN-------WWVSKLIRKRHDSSVTSVA 151 (379)
Q Consensus 80 vw~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~v~i~~~~~~~~-------~~~~~~~~~~~~~~v~~~~ 151 (379)
+|+...+.....-.+..|...|.|+++ .++..++|+|+-|+.|.+||++++.. ......+..++...|++++
T Consensus 99 ~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA 178 (735)
T KOG0308|consen 99 VWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLA 178 (735)
T ss_pred EeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeee
Confidence 999987742222234679999999999 77889999999999999999997631 0011122137889999999
Q ss_pred EcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEE
Q 016982 152 WHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFV 231 (379)
Q Consensus 152 ~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~ 231 (379)
.++.|..+++|+..+.+++||. ++.+.+..+.+|...|..+..++||..+++++.||+|++|
T Consensus 179 ~N~t~t~ivsGgtek~lr~wDp------------------rt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlW 240 (735)
T KOG0308|consen 179 MNQTGTIIVSGGTEKDLRLWDP------------------RTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLW 240 (735)
T ss_pred cCCcceEEEecCcccceEEecc------------------ccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEee
Confidence 9999999999999999999996 7888899999999999999999999999999999999999
Q ss_pred ECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecC
Q 016982 232 DDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADE 277 (379)
Q Consensus 232 d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~ 277 (379)
|+...+ ++.++..|...|+++..+|+-..+. ++.|+.++.-++.+
T Consensus 241 dLgqQr-Cl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 241 DLGQQR-CLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred eccccc-eeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCC
Confidence 998866 6688899999999999998866665 66777776655443
No 101
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.2e-29 Score=211.39 Aligned_cols=324 Identities=11% Similarity=0.126 Sum_probs=242.6
Q ss_pred ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEE-cCCCCEEEEEeCCCeEEEEec
Q 016982 5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDW-SVRSNRIVTVSHDRNSYVWNQ 83 (379)
Q Consensus 5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~vw~~ 83 (379)
.+..|.+.|..++...+++.|++++.|-+|++|+...+..-+..++..|.+.|.|+++ .++..++|+|+-|+.|.+||+
T Consensus 68 sme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDi 147 (735)
T KOG0308|consen 68 SMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDI 147 (735)
T ss_pred hhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEc
Confidence 4677899999999999999999999999999999987644577889999999999999 788889999999999999999
Q ss_pred cCCc--eee------eEEee-cCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcC
Q 016982 84 EGSE--WVP------TLVIL-RLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHP 154 (379)
Q Consensus 84 ~~~~--~~~------~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 154 (379)
+++. ... .-... ++...|++++-++.|..|++|+..+.+++||.++.+. .-.+ .+|...|.++-.++
T Consensus 148 n~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~k---imkL-rGHTdNVr~ll~~d 223 (735)
T KOG0308|consen 148 NTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKK---IMKL-RGHTDNVRVLLVND 223 (735)
T ss_pred cCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccc---eeee-eccccceEEEEEcC
Confidence 9772 111 11112 5678899999999999999999999999999999874 3334 69999999999999
Q ss_pred CCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECC
Q 016982 155 NNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDV 234 (379)
Q Consensus 155 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~ 234 (379)
||+.+++++.||+|++||+ ...+|+.++..|...|+++..+|+-..+.+|+.||.|..=|++
T Consensus 224 DGt~~ls~sSDgtIrlWdL------------------gqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~ 285 (735)
T KOG0308|consen 224 DGTRLLSASSDGTIRLWDL------------------GQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLR 285 (735)
T ss_pred CCCeEeecCCCceEEeeec------------------cccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccC
Confidence 9999999999999999997 6778999999999999999999999999999999999999999
Q ss_pred CCCceeeeeeeecCCeeeEEEec-CCcEEEEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeecc
Q 016982 235 GPSPLAQNVAFRDLPLRDVLFVS-EKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQ 313 (379)
Q Consensus 235 ~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (379)
+.... ..+.....+|..+.... +..+-++..|..|.-|.....-.....+.++ .+.+.
T Consensus 286 n~~~~-tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~--------------------~~~T~ 344 (735)
T KOG0308|consen 286 NPAKS-TLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLD--------------------FFSTD 344 (735)
T ss_pred Cchhh-eEeecCCCchhhhhhccccCCceeeeccccceecCCccccccccCCCCC--------------------ccccc
Confidence 87544 33333567888887774 3445677888888877654321111100000 00000
Q ss_pred ccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCccccccCC
Q 016982 314 SKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDLLNYH 378 (379)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~~~~~ 378 (379)
...-.......+.. .+.|- ..|...++.. +.+.++|=..+|.+.+||+-....+..|+
T Consensus 345 ~~~~~~~~~~tp~~-vi~Gg-~ai~k~~mL~-----dkRhVlTkDa~gnv~lwDIl~~~~~~d~g 402 (735)
T KOG0308|consen 345 SNNHSCDLTNTPDS-VIPGG-AAIKKHAMLN-----DKRHVLTKDAKGNVALWDILACVKVEDFG 402 (735)
T ss_pred CCCccccccCCCce-eccCc-hhhhhhhhhc-----CcceEeeecCCCCEEEEEeeeeeehhhcc
Confidence 00000000000111 11111 1344444332 33899999999999999998877766554
No 102
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.7e-28 Score=189.02 Aligned_cols=243 Identities=15% Similarity=0.196 Sum_probs=193.8
Q ss_pred ccceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCC--EEEEEeCCCeEEE
Q 016982 3 AIAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSN--RIVTVSHDRNSYV 80 (379)
Q Consensus 3 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~v 80 (379)
-..+..|.++|++++. ++.++|+|+.|.+|+|||+... ..+..+-.|.+.|+++.|.+.-. .|++|+.||.|.+
T Consensus 36 lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~--~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~i 111 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKR--KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIII 111 (362)
T ss_pred cccccccccceeEEEe--cceeEeccCCCCcEEEEeccch--hhhcceeccccceEEEEecCCcchhheeeecCCCcEEE
Confidence 4456778999999998 4799999999999999999987 67788888999999999998764 8999999999999
Q ss_pred EeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEE
Q 016982 81 WNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLA 160 (379)
Q Consensus 81 w~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 160 (379)
|+...-.+...+ .+|.+.|+.++.+|.+++.++.+.|+.+++||+-.++...+.+ ..+. -+.+.|+|.|.+++
T Consensus 112 w~~~~W~~~~sl--K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~---L~~~--at~v~w~~~Gd~F~ 184 (362)
T KOG0294|consen 112 WRVGSWELLKSL--KAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLN---LKNK--ATLVSWSPQGDHFV 184 (362)
T ss_pred EEcCCeEEeeee--cccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeec---cCCc--ceeeEEcCCCCEEE
Confidence 998877655554 7899999999999999999999999999999998887432222 2233 34499999999998
Q ss_pred EeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCcee
Q 016982 161 TTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA 240 (379)
Q Consensus 161 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~ 240 (379)
.+..+ .|-+|.+ ........+.. ...+.++.|- ++..|++|+.|+.|.+||..... +.
T Consensus 185 v~~~~-~i~i~q~------------------d~A~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~-~~ 242 (362)
T KOG0294|consen 185 VSGRN-KIDIYQL------------------DNASVFREIEN-PKRILCATFL-DGSELLVGGDNEWISLKDTDSDT-PL 242 (362)
T ss_pred EEecc-EEEEEec------------------ccHhHhhhhhc-cccceeeeec-CCceEEEecCCceEEEeccCCCc-cc
Confidence 88766 4788876 22232222222 2345666664 56788899999999999988755 44
Q ss_pred eeeeeecCCeeeEEEe--cCCcEEE-EEeCCCeEEEEecCC
Q 016982 241 QNVAFRDLPLRDVLFV--SEKMVIG-VGFDCNPMVFAADET 278 (379)
Q Consensus 241 ~~~~~~~~~i~~~~~s--~~~~~l~-~~~d~~~~i~~~~~~ 278 (379)
..+.+|...|.++.+- |++.+|+ +++||.|++|+.+-.
T Consensus 243 ~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 243 TEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 7888999999999853 4677777 889999999998743
No 103
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=9e-29 Score=199.67 Aligned_cols=262 Identities=14% Similarity=0.133 Sum_probs=209.4
Q ss_pred EEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCcee----ee----------EEe--ecCCCceeEEEECCCC
Q 016982 47 LHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWV----PT----------LVI--LRLNRAALCVQWSPKE 110 (379)
Q Consensus 47 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~----~~----------~~~--~~~~~~v~~~~~~~~~ 110 (379)
...+..|.-+|.+++++|++.+.++++.+++|.-|++.++... +. ... ..|...+.+++.++||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 4566779999999999999999999999999999999877522 11 001 2577889999999999
Q ss_pred CEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccC
Q 016982 111 NKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSD 190 (379)
Q Consensus 111 ~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~ 190 (379)
++|++|+.|..|.||+.++.+. .+.+ .+|.+.|.+++|-.....|++++.|+.+++|++
T Consensus 215 kylatgg~d~~v~Iw~~~t~eh---v~~~-~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~----------------- 273 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEH---VKVF-KGHRGAVSSLAFRKGTSELYSASADRSVKVWSI----------------- 273 (479)
T ss_pred cEEEecCCCceEEEecCcccch---hhcc-cccccceeeeeeecCccceeeeecCCceEEEeh-----------------
Confidence 9999999999999999999883 5556 899999999999988889999999999999997
Q ss_pred CcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEeCCCe
Q 016982 191 TKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNP 270 (379)
Q Consensus 191 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~ 270 (379)
.....+.++.+|...|.++.-..-++.+-+|+.|+++++|++....+ ..+.++.+.+-+++|-.+..++.++.+|.|
T Consensus 274 -~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq--lifrg~~~sidcv~~In~~HfvsGSdnG~I 350 (479)
T KOG0299|consen 274 -DQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQ--LIFRGGEGSIDCVAFINDEHFVSGSDNGSI 350 (479)
T ss_pred -hHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccce--eeeeCCCCCeeeEEEecccceeeccCCceE
Confidence 55667788899999999998888888888888999999999966554 345567889999999999999999999999
Q ss_pred EEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcc
Q 016982 271 MVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSR 350 (379)
Q Consensus 271 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 350 (379)
.+|.+-.....-......... +.+ ....+.-.|+++++. |.
T Consensus 351 aLWs~~KKkplf~~~~AHgv~-------------~~~---------------------~~~~~~~Witsla~i-----~~ 391 (479)
T KOG0299|consen 351 ALWSLLKKKPLFTSRLAHGVI-------------PEL---------------------DPVNGNFWITSLAVI-----PG 391 (479)
T ss_pred EEeeecccCceeEeecccccc-------------CCc---------------------cccccccceeeeEec-----cc
Confidence 999876543222211110000 000 001233579999965 34
Q ss_pred cceEEEeecCceEEEEeCCCc
Q 016982 351 ITRFTTSGLDGKIVTWDLESQ 371 (379)
Q Consensus 351 ~~~l~t~~~Dg~v~iW~~~~~ 371 (379)
..++|||+.||.||+|.+.++
T Consensus 392 sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 392 SDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred CceEEecCCCCceEEEEecCC
Confidence 489999999999999999886
No 104
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=2.6e-28 Score=197.01 Aligned_cols=248 Identities=13% Similarity=0.132 Sum_probs=204.8
Q ss_pred ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceE---------------EEEEe-ccCCCceEEEEEcCCCCE
Q 016982 5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWE---------------KLHVL-QKHDQIVSGIDWSVRSNR 68 (379)
Q Consensus 5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~---------------~~~~~-~~~~~~v~~~~~~~~~~~ 68 (379)
.+..|.-+|+|++++|++++.++++.+++|.=|++.++.-. +...- ..|...+.+++.++||++
T Consensus 137 ~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgky 216 (479)
T KOG0299|consen 137 VIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKY 216 (479)
T ss_pred eeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcE
Confidence 35678999999999999999999999999999998776311 01111 378889999999999999
Q ss_pred EEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEE
Q 016982 69 IVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVT 148 (379)
Q Consensus 69 l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~ 148 (379)
|++|+.|..|.||+.++.+.+..+ ..|.+.|.+++|-.....+++++.|+.+++|+++... ..+.+ .+|++.|.
T Consensus 217 latgg~d~~v~Iw~~~t~ehv~~~--~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s---~vetl-yGHqd~v~ 290 (479)
T KOG0299|consen 217 LATGGRDRHVQIWDCDTLEHVKVF--KGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS---YVETL-YGHQDGVL 290 (479)
T ss_pred EEecCCCceEEEecCcccchhhcc--cccccceeeeeeecCccceeeeecCCceEEEehhHhH---HHHHH-hCCcccee
Confidence 999999999999999999866654 7899999999999888899999999999999998876 45566 79999999
Q ss_pred EEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeE
Q 016982 149 SVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMI 228 (379)
Q Consensus 149 ~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i 228 (379)
.+......+.+-+|+.|+++++|++. .+....+.++.+.+-+++|-.+. .+++|+.+|.|
T Consensus 291 ~IdaL~reR~vtVGgrDrT~rlwKi~-------------------eesqlifrg~~~sidcv~~In~~-HfvsGSdnG~I 350 (479)
T KOG0299|consen 291 GIDALSRERCVTVGGRDRTVRLWKIP-------------------EESQLIFRGGEGSIDCVAFINDE-HFVSGSDNGSI 350 (479)
T ss_pred eechhcccceEEeccccceeEEEecc-------------------ccceeeeeCCCCCeeeEEEeccc-ceeeccCCceE
Confidence 99988888888888899999999971 22233456778889999998654 57899999999
Q ss_pred EEEECCCCCceeeeeeeec-----------CCeeeEEEecCCcEEE-EEeCCCeEEEEecCC
Q 016982 229 YFVDDVGPSPLAQNVAFRD-----------LPLRDVLFVSEKMVIG-VGFDCNPMVFAADET 278 (379)
Q Consensus 229 ~v~d~~~~~~~~~~~~~~~-----------~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~ 278 (379)
.+|++.+.+++...-..|+ ..|++++..|...+++ ++.+|.+++|...++
T Consensus 351 aLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 351 ALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred EEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 9999988776544333331 2688999999999998 567999999998764
No 105
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=5.3e-28 Score=186.43 Aligned_cols=244 Identities=15% Similarity=0.215 Sum_probs=184.5
Q ss_pred eeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeE
Q 016982 13 ITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTL 92 (379)
Q Consensus 13 i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~ 92 (379)
-.|+.|++.|.+||+|+.||.|.|||+.+- ..-+.+.+|..+|++++||++|++|+|++.|..|.+||+..+.+...+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~--~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF--RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI 103 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEcccc--chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE
Confidence 679999999999999999999999999986 677889999999999999999999999999999999999999877766
Q ss_pred EeecCCCceeEEEECCCC-CEEEEEeCCCeEEEEEeecCCceeEEEEEeecCC----cCEEEEEEcCCCcEEEEeeCCCe
Q 016982 93 VILRLNRAALCVQWSPKE-NKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHD----SSVTSVAWHPNNVFLATTSTDGK 167 (379)
Q Consensus 93 ~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~p~~~~l~~~~~d~~ 167 (379)
. ..++|+.+.|+|.. +..++.-.+..-.+.++..+. ...+..... ..-.+..|.+.|+++++|...|.
T Consensus 104 r---f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~----h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGk 176 (405)
T KOG1273|consen 104 R---FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK----HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGK 176 (405)
T ss_pred E---ccCccceeeeccccCCeEEEEEecCCcEEEEecCCc----eeeccCCCccccccccccccccCCCCEEEEecCcce
Confidence 5 47899999999943 334444344555565665433 233311111 12233468899999999999999
Q ss_pred EEEEeccccccccccccCCCccCCcccceEEEeecCC-cceEEEEECCCCCEEEEEcCCCeEEEEECCCC------Cce-
Q 016982 168 CRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSF-SWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGP------SPL- 239 (379)
Q Consensus 168 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~------~~~- 239 (379)
+.++|. .+.+++..++... ..|..+.++..|++|+..+.|..|+.|+++.- .++
T Consensus 177 llv~~a------------------~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e 238 (405)
T KOG1273|consen 177 LLVYDA------------------ETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVE 238 (405)
T ss_pred EEEEec------------------chheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcC
Confidence 999996 6678888776555 67899999999999999999999999987631 111
Q ss_pred -eeeeee--ecCCeeeEEEecCCcEEEEEe--CCCeEEEEecCCCcEEE
Q 016982 240 -AQNVAF--RDLPLRDVLFVSEKMVIGVGF--DCNPMVFAADETGIWTF 283 (379)
Q Consensus 240 -~~~~~~--~~~~i~~~~~s~~~~~l~~~~--d~~~~i~~~~~~~~~~~ 283 (379)
.+.++. ....=.+++|+.+|.|+++++ ...+++|....+.+.++
T Consensus 239 ~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKI 287 (405)
T KOG1273|consen 239 PEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKI 287 (405)
T ss_pred hhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeee
Confidence 011110 122345789999999998654 34688888665544443
No 106
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=2.3e-29 Score=200.39 Aligned_cols=238 Identities=15% Similarity=0.159 Sum_probs=195.3
Q ss_pred ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982 5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE 84 (379)
Q Consensus 5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~ 84 (379)
+|.+..++|+++.|.++++.+++++.|+.+++|++... +...+|.+|.+.|+++.|......+++++.|.+|++||+.
T Consensus 214 tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~--r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~ 291 (459)
T KOG0288|consen 214 TLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSL--RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQ 291 (459)
T ss_pred hhhccCCCcceeeecCCCceEEeecCCCceeeeeccch--hhhhhhcccccceeeehhhccccceeeccccchhhhhhhh
Confidence 45667789999999999999999999999999999886 7889999999999999999877779999999999999999
Q ss_pred CCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC
Q 016982 85 GSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST 164 (379)
Q Consensus 85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 164 (379)
...+...... ...+.+|..+ ...+++|-.|+.|++||.+... ..... ...+.|+++..++++..+.+++.
T Consensus 292 k~~C~kt~l~---~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~---~~~sv--~~gg~vtSl~ls~~g~~lLsssR 361 (459)
T KOG0288|consen 292 KAYCSKTVLP---GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSAD---KTRSV--PLGGRVTSLDLSMDGLELLSSSR 361 (459)
T ss_pred hhheeccccc---cccccceEec--ceeeeecccccceEEEeccCCc---eeeEe--ecCcceeeEeeccCCeEEeeecC
Confidence 9876665532 3555666665 5578899999999999999887 34443 44459999999999999999999
Q ss_pred CCeEEEEeccccccccccccCCCccCCcccceEEEeecC----CcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCcee
Q 016982 165 DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS----FSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA 240 (379)
Q Consensus 165 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~ 240 (379)
|.++.+.|+ ++.+....+... ....+.+.|||++.|+++|+.||.|+||++.+++ +.
T Consensus 362 Ddtl~viDl------------------Rt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgK-lE 422 (459)
T KOG0288|consen 362 DDTLKVIDL------------------RTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGK-LE 422 (459)
T ss_pred CCceeeeec------------------ccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCce-EE
Confidence 999999997 444444444322 2347899999999999999999999999999876 44
Q ss_pred eeeeeecC--CeeeEEEecCCcEEE-EEeCCCeEEE
Q 016982 241 QNVAFRDL--PLRDVLFVSEKMVIG-VGFDCNPMVF 273 (379)
Q Consensus 241 ~~~~~~~~--~i~~~~~s~~~~~l~-~~~d~~~~i~ 273 (379)
..+..... .|++++|+|.|..++ ++.+..+.+|
T Consensus 423 ~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 423 KVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred EEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 55554443 599999999998776 6666677776
No 107
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=5.1e-28 Score=182.28 Aligned_cols=249 Identities=13% Similarity=0.127 Sum_probs=199.1
Q ss_pred cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeC-----CCeE
Q 016982 4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSH-----DRNS 78 (379)
Q Consensus 4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i 78 (379)
.++.+|.+.|+|++.+.+.+.+++|+.|.++++||++++ +.+..++. ..+|..+.|+++|++++.+.. .+.|
T Consensus 46 Gty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG--k~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v 122 (327)
T KOG0643|consen 46 GTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG--KQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFV 122 (327)
T ss_pred eeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC--cEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEE
Confidence 467899999999999999999999999999999999998 67777763 568999999999998877653 3569
Q ss_pred EEEeccCCc-----eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEc
Q 016982 79 YVWNQEGSE-----WVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWH 153 (379)
Q Consensus 79 ~vw~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 153 (379)
.++|++... ..+.+.+..+...++.+-|.|-+++|++|..||.|..||.+++.. ..... ..|...|+.++++
T Consensus 123 ~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~--~v~s~-~~h~~~Ind~q~s 199 (327)
T KOG0643|consen 123 SVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKE--LVDSD-EEHSSKINDLQFS 199 (327)
T ss_pred EEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCce--eeech-hhhcccccccccc
Confidence 999987331 113344456678999999999999999999999999999998763 33333 6788999999999
Q ss_pred CCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEE--
Q 016982 154 PNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFV-- 231 (379)
Q Consensus 154 p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~-- 231 (379)
||..++++++.|.+-++||. .+-+.++++.. ..+|++.+++|....++.++.....-|=
T Consensus 200 ~d~T~FiT~s~Dttakl~D~------------------~tl~v~Kty~t-e~PvN~aaisP~~d~VilgGGqeA~dVTTT 260 (327)
T KOG0643|consen 200 RDRTYFITGSKDTTAKLVDV------------------RTLEVLKTYTT-ERPVNTAAISPLLDHVILGGGQEAMDVTTT 260 (327)
T ss_pred CCcceEEecccCccceeeec------------------cceeeEEEeee-cccccceecccccceEEecCCceeeeeeee
Confidence 99999999999999999996 66777777765 5789999999987777776543221111
Q ss_pred ECCCC-----------CceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecC
Q 016982 232 DDVGP-----------SPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADE 277 (379)
Q Consensus 232 d~~~~-----------~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~ 277 (379)
+.+.+ ++.+..+++|-+||++++|+|+|+..+ +|.||.+++...+.
T Consensus 261 ~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 261 STRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred cccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 11111 123456788999999999999999887 67888998877654
No 108
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.4e-27 Score=183.52 Aligned_cols=270 Identities=16% Similarity=0.270 Sum_probs=212.6
Q ss_pred eeccCcceeEEEeCCCCcEEEEEecCCeEEEEEec--CCceEEEEEeccCCCceEEEEEcCC--CCEEEEEeCCCeEEEE
Q 016982 6 VHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLI--QEKWEKLHVLQKHDQIVSGIDWSVR--SNRIVTVSHDRNSYVW 81 (379)
Q Consensus 6 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~vw 81 (379)
..+|.+-|.++.|.+.|+++|+|+.|++|+|||.. ++++.+....+.|.+.|..+.|.+- |+.+|+++.|+++.||
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 46789999999999999999999999999999964 4568899999999999999999764 7999999999999999
Q ss_pred ecc-------CCceeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCeEEEEEeecCC---ceeEEEEEe------ecC
Q 016982 82 NQE-------GSEWVPTLVILRLNRAALCVQWSP--KENKFAVGSGAKTVCICYYEQEN---NWWVSKLIR------KRH 143 (379)
Q Consensus 82 ~~~-------~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~i~~~~~~~---~~~~~~~~~------~~~ 143 (379)
.-. +.+++....+......|+++.|.| -|-.+|+++.||.++||+.-... .|.+...+. ..+
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence 752 235666666677889999999999 57899999999999999765432 222222221 246
Q ss_pred CcCEEEEEEcCC---CcEEEEeeCC-----CeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCC
Q 016982 144 DSSVTSVAWHPN---NVFLATTSTD-----GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPS 215 (379)
Q Consensus 144 ~~~v~~~~~~p~---~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 215 (379)
..+..|+.|+|. ..+|+.|+.+ +.++||.... ..+....+.++..|..+|+.++|.|+
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e--------------~~rKw~kva~L~d~~dpI~di~wAPn 234 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNE--------------NGRKWLKVAELPDHTDPIRDISWAPN 234 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecC--------------CcceeeeehhcCCCCCcceeeeeccc
Confidence 678899999985 3678888765 4788886410 01233456677899999999999995
Q ss_pred ----CCEEEEEcCCCeEEEEECCCC-------------------CceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeE
Q 016982 216 ----GNTLAYVGHNSMIYFVDDVGP-------------------SPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPM 271 (379)
Q Consensus 216 ----~~~l~~~~~d~~i~v~d~~~~-------------------~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~ 271 (379)
-..||+++.|| |+||.+... -+.+..+..|++.|+.+.|.-.|..|+ +|.||.++
T Consensus 235 ~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VR 313 (361)
T KOG2445|consen 235 IGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVR 313 (361)
T ss_pred cCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceee
Confidence 34689999999 999987631 113345667899999999999999998 78999999
Q ss_pred EEEecCCCcEEEEEEeccc
Q 016982 272 VFAADETGIWTFIKFLDER 290 (379)
Q Consensus 272 i~~~~~~~~~~~~~~~~~~ 290 (379)
+|..+-...|+....+...
T Consensus 314 LWkany~n~~kC~sv~~~e 332 (361)
T KOG2445|consen 314 LWKANYNNLWKCTSVLKAE 332 (361)
T ss_pred ehhhhhhhhheeeeEEecc
Confidence 9999888888877665443
No 109
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=5.5e-27 Score=198.02 Aligned_cols=284 Identities=15% Similarity=0.251 Sum_probs=220.9
Q ss_pred CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCC-CceEEEEEcCCCCEEEEEeCCCeEEEEeccCCce
Q 016982 10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHD-QIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEW 88 (379)
Q Consensus 10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~ 88 (379)
.++|+++||+.+.+.||.+-.+|.|.||++..+ +-....+.++. ..|.+++|++ +..|++.+.+|.|.-||+.+.+.
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~-w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN-WFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCC-ceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCce
Confidence 589999999999999999999999999999986 66666676664 5799999995 55788889999999999999985
Q ss_pred eeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeE
Q 016982 89 VPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKC 168 (379)
Q Consensus 89 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i 168 (379)
...+ ....+.|++++.+|.+..+++|++||.+..++...+.- ...+.+ ....+.+.+++|+|++..++.|+.||.|
T Consensus 103 ~~~~--d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I-~~~r~l-~rq~sRvLslsw~~~~~~i~~Gs~Dg~I 178 (691)
T KOG2048|consen 103 KYNI--DSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKI-TYKRSL-MRQKSRVLSLSWNPTGTKIAGGSIDGVI 178 (691)
T ss_pred eEEe--cCCCcceeEEEeCCccceEEeecCCceEEEEecCCceE-EEEeec-ccccceEEEEEecCCccEEEecccCceE
Confidence 4444 56789999999999999999999999776666655542 112233 4556899999999999999999999999
Q ss_pred EEEeccccccccccccCCCccCCcccceEEEe-----e---cCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCcee
Q 016982 169 RVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL-----D---LSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA 240 (379)
Q Consensus 169 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~ 240 (379)
++||. ..+..++.. . ....-|+++.|-.++ .+++|...|+|.+||...+. ++
T Consensus 179 riwd~------------------~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gT-Li 238 (691)
T KOG2048|consen 179 RIWDV------------------KSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGT-LI 238 (691)
T ss_pred EEEEc------------------CCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcc-hh
Confidence 99997 334433311 1 122347888887665 58899999999999988776 56
Q ss_pred eeeeeecCCeeeEEEecCCc-EEEEEeCCCeEEEEecCCCc-EEEEEEecccccCCCCCccCCCcccccceeeccccccC
Q 016982 241 QNVAFRDLPLRDVLFVSEKM-VIGVGFDCNPMVFAADETGI-WTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGV 318 (379)
Q Consensus 241 ~~~~~~~~~i~~~~~s~~~~-~l~~~~d~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (379)
+....|...|.+++..+++. ++.+|.|+.+..|.....+. |.....
T Consensus 239 qS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~-------------------------------- 286 (691)
T KOG2048|consen 239 QSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSR-------------------------------- 286 (691)
T ss_pred hhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeecc--------------------------------
Confidence 88888999999999999855 45588999998888776543 443221
Q ss_pred cccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCC
Q 016982 319 GNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLE 369 (379)
Q Consensus 319 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~ 369 (379)
-..|...|.+++++. ..+++||.|+.+.+=...
T Consensus 287 -----------r~~h~hdvrs~av~~-------~~l~sgG~d~~l~i~~s~ 319 (691)
T KOG2048|consen 287 -----------RDLHAHDVRSMAVIE-------NALISGGRDFTLAICSSR 319 (691)
T ss_pred -----------ccCCcccceeeeeec-------ceEEecceeeEEEEcccc
Confidence 145777888888652 478888888887775544
No 110
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=5.1e-28 Score=211.38 Aligned_cols=240 Identities=15% Similarity=0.094 Sum_probs=208.3
Q ss_pred ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982 5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE 84 (379)
Q Consensus 5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~ 84 (379)
.+.+|.+.|.++++..-+.+|++|+.|.++++||..++ ++...+.+|...|.++... ..++++|+.|.+|++|+++
T Consensus 244 ~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg--~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~ 319 (537)
T KOG0274|consen 244 RLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG--ECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVT 319 (537)
T ss_pred eccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC--cEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEecc
Confidence 37899999999999877889999999999999999988 8999999999999999876 4578889999999999999
Q ss_pred CCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC
Q 016982 85 GSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST 164 (379)
Q Consensus 85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 164 (379)
++.++..+ .+|..+|.++..+ +.++++|+.|+.|++||+.+.+ +.+.+ .+|...|.++.+.+. .++++|+.
T Consensus 320 n~~~l~l~--~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~---cl~sl-~gH~~~V~sl~~~~~-~~~~Sgs~ 390 (537)
T KOG0274|consen 320 NGACLNLL--RGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGK---CLKSL-SGHTGRVYSLIVDSE-NRLLSGSL 390 (537)
T ss_pred CcceEEEe--ccccccEEEEEec--CCEEEEEecCceEEEEEhhhce---eeeee-cCCcceEEEEEecCc-ceEEeeee
Confidence 99877666 4599999999998 8899999999999999999877 67777 889999999988654 89999999
Q ss_pred CCeEEEEeccccccccccccCCCccCCccc-ceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeee
Q 016982 165 DGKCRVFSTFIKGVDIKEKKEGTSSDTKFG-EQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNV 243 (379)
Q Consensus 165 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 243 (379)
|+.|++||+ ... +++..+.+|..-+..+.+ .+++|++++.|+.|++||...++ +.+.+
T Consensus 391 D~~IkvWdl------------------~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~-~~~~~ 449 (537)
T KOG0274|consen 391 DTTIKVWDL------------------RTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGE-CLRTL 449 (537)
T ss_pred ccceEeecC------------------CchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCc-eeeee
Confidence 999999997 555 899999999888866654 57899999999999999988876 45777
Q ss_pred ee-ecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCC
Q 016982 244 AF-RDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETG 279 (379)
Q Consensus 244 ~~-~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~ 279 (379)
.+ |...|..+++. +..+++++.++.+.+|+.....
T Consensus 450 ~~~~~~~v~~l~~~-~~~il~s~~~~~~~l~dl~~~~ 485 (537)
T KOG0274|consen 450 EGRHVGGVSALALG-KEEILCSSDDGSVKLWDLRSGT 485 (537)
T ss_pred ccCCcccEEEeecC-cceEEEEecCCeeEEEecccCc
Confidence 77 56778888876 5667779999999999877543
No 111
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6.5e-29 Score=212.55 Aligned_cols=290 Identities=14% Similarity=0.155 Sum_probs=218.7
Q ss_pred CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceE--EEEEeccCC---CceEEEEEcC-CCCEEEEEeCCCeEEEEec
Q 016982 10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWE--KLHVLQKHD---QIVSGIDWSV-RSNRIVTVSHDRNSYVWNQ 83 (379)
Q Consensus 10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~--~~~~~~~~~---~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~ 83 (379)
+....+++.+++-..++.+++ ..++||........ +...+..-. -.+..+.|+. +.++|+|++.+|.|.+||+
T Consensus 39 k~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL 117 (839)
T ss_pred ccccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence 566778888898888888876 47888887654221 111111111 1345678874 3589999999999999999
Q ss_pred cCC-ceeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCC-CcEEE
Q 016982 84 EGS-EWVPTLVILRLNRAALCVQWSP-KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPN-NVFLA 160 (379)
Q Consensus 84 ~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~ 160 (379)
... +......+..|...+.++.|++ ..++|++|+.||+|++||++.... ...+ .+....|.+++|+|. +..|+
T Consensus 118 nk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S---~~t~-~~nSESiRDV~fsp~~~~~F~ 193 (839)
T KOG0269|consen 118 NKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS---KSTF-RSNSESIRDVKFSPGYGNKFA 193 (839)
T ss_pred CccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc---cccc-cccchhhhceeeccCCCceEE
Confidence 872 1112233477999999999998 567899999999999999998873 3444 677889999999995 58999
Q ss_pred EeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCcee
Q 016982 161 TTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA 240 (379)
Q Consensus 161 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~ 240 (379)
++.+.|.+++||+ .+..++...+..|.++|.++.|+|++.+||+|+.|+.|+|||+.+++...
T Consensus 194 s~~dsG~lqlWDl-----------------Rqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~ 256 (839)
T KOG0269|consen 194 SIHDSGYLQLWDL-----------------RQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKP 256 (839)
T ss_pred EecCCceEEEeec-----------------cCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccc
Confidence 9999999999998 46678888999999999999999999999999999999999998664322
Q ss_pred eeeeeecCCeeeEEEecCCc-EEEE---EeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccc
Q 016982 241 QNVAFRDLPLRDVLFVSEKM-VIGV---GFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKY 316 (379)
Q Consensus 241 ~~~~~~~~~i~~~~~s~~~~-~l~~---~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (379)
...-....++..+.|-|+.+ .|++ ..|-.|+||+..... .++.
T Consensus 257 ~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY----------------------------IP~~----- 303 (839)
T KOG0269|consen 257 KHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY----------------------------IPYA----- 303 (839)
T ss_pred eeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecccc----------------------------ccce-----
Confidence 22222467899999999765 4553 246688888754321 1111
Q ss_pred cCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCC
Q 016982 317 GVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLES 370 (379)
Q Consensus 317 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~ 370 (379)
.+..|...++.++|-+.|. ..|.+++.||+|..-.+++
T Consensus 304 ------------t~~eH~~~vt~i~W~~~d~----~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 304 ------------TFLEHTDSVTGIAWDSGDR----INLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred ------------eeeccCccccceeccCCCc----eeeEeecCccHHHHhhhhc
Confidence 3357999999999554343 7899999999988766654
No 112
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.7e-27 Score=202.53 Aligned_cols=300 Identities=12% Similarity=0.099 Sum_probs=215.9
Q ss_pred EEEeCCCCcEEEEEecCCeEEEEEecCC-ceEEEEEeccCCCceEEEEEcCC-----------CCEEEEEeCCCeEEEEe
Q 016982 15 CHAWSPDHAMVAFCPNNNEVHIYKLIQE-KWEKLHVLQKHDQIVSGIDWSVR-----------SNRIVTVSHDRNSYVWN 82 (379)
Q Consensus 15 ~~~~s~~~~~l~~~~~dg~i~i~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~-----------~~~l~~~~~d~~i~vw~ 82 (379)
++.|++....|.+...|..+++||+.+- +......+-.|...|..+.--|- ...++|++.|++|++|+
T Consensus 329 A~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~ 408 (1080)
T KOG1408|consen 329 ACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWD 408 (1080)
T ss_pred EEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEee
Confidence 5689998899999999999999999863 23344555568888887776551 13588999999999999
Q ss_pred ccCCceeeeE-----------------------------------EeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEe
Q 016982 83 QEGSEWVPTL-----------------------------------VILRLNRAALCVQWSPKENKFAVGSGAKTVCICYY 127 (379)
Q Consensus 83 ~~~~~~~~~~-----------------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~ 127 (379)
+.....-..+ ........+.+++.+|+|+.||+|..-|.+++|++
T Consensus 409 l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~L 488 (1080)
T KOG1408|consen 409 LAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDL 488 (1080)
T ss_pred cccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEe
Confidence 8763110000 01122346899999999999999999999999999
Q ss_pred ecCCceeEEEEEeecCCcCEEEEEEcCC---CcEEEEeeCCCeEEEEeccccc-----ccc-----------------cc
Q 016982 128 EQENNWWVSKLIRKRHDSSVTSVAWHPN---NVFLATTSTDGKCRVFSTFIKG-----VDI-----------------KE 182 (379)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~l~~~~~d~~i~v~d~~~~~-----~~~-----------------~~ 182 (379)
.... ..-.+ ..|...|.|+.|+.. .++|++++.|..|.|||+..+- ++. +.
T Consensus 489 q~l~---~~~~~-eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~M 564 (1080)
T KOG1408|consen 489 QELE---YTCFM-EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKM 564 (1080)
T ss_pred hhhh---hhhhe-ecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEE
Confidence 8766 23334 799999999999853 4789999999999999975210 000 00
Q ss_pred c--cCCCcc---CCcccceEEEeec-----CCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeee---ecCC
Q 016982 183 K--KEGTSS---DTKFGEQILQLDL-----SFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAF---RDLP 249 (379)
Q Consensus 183 ~--~~~~~~---~~~~~~~~~~~~~-----~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~---~~~~ 249 (379)
- .+.... ..+.......+.. ....+..++..|..+++++++.|..|+|||+.++++. +.+++ |.+.
T Consensus 565 iscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~-k~FKgs~~~eG~ 643 (1080)
T KOG1408|consen 565 ISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQV-KSFKGSRDHEGD 643 (1080)
T ss_pred EeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccccee-eeecccccCCCc
Confidence 0 000000 0000000011111 1245788999999999999999999999999998854 66654 4566
Q ss_pred eeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccc
Q 016982 250 LRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRT 328 (379)
Q Consensus 250 i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (379)
...+...|.|-||+ +++|.++.++++-.+.+..
T Consensus 644 lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA---------------------------------------------- 677 (1080)
T KOG1408|consen 644 LIKVILDPSGIYLATSCSDKTLCFVDFVSGECVA---------------------------------------------- 677 (1080)
T ss_pred eEEEEECCCccEEEEeecCCceEEEEeccchhhh----------------------------------------------
Confidence 77899999999999 5678899888865543221
Q ss_pred cccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCC
Q 016982 329 RGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLES 370 (379)
Q Consensus 329 ~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~ 370 (379)
.+.||...|+.+. |.+|- +.|++.+.||.|.||.+..
T Consensus 678 ~m~GHsE~VTG~k-F~nDC----kHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 678 QMTGHSEAVTGVK-FLNDC----KHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred hhcCcchheeeee-ecccc----hhheeecCCceEEEEECch
Confidence 2258999999999 76665 8999999999999999864
No 113
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=8.2e-29 Score=190.55 Aligned_cols=251 Identities=8% Similarity=0.096 Sum_probs=202.1
Q ss_pred ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982 5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE 84 (379)
Q Consensus 5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~ 84 (379)
+++.|.++|+++.|+|....|++|+.|++|++||......+.....-....+|.++.|+|.|.+|+.|..-.++++||++
T Consensus 167 TlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~ 246 (430)
T KOG0640|consen 167 TLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVN 246 (430)
T ss_pred ehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEecc
Confidence 57889999999999999999999999999999999764222222222245689999999999999999999999999999
Q ss_pred CCceeeeE-EeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCC-cCEEEEEEcCCCcEEEEe
Q 016982 85 GSEWVPTL-VILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHD-SSVTSVAWHPNNVFLATT 162 (379)
Q Consensus 85 ~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~l~~~ 162 (379)
+-++-... ....|.+.|+++.+++.+++.++++.||.|++||--.+. +.+.+...|. ..|.+..|..+++++++.
T Consensus 247 T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~r---Cv~t~~~AH~gsevcSa~Ftkn~kyiLsS 323 (430)
T KOG0640|consen 247 TYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNR---CVRTIGNAHGGSEVCSAVFTKNGKYILSS 323 (430)
T ss_pred ceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHH---HHHHHHhhcCCceeeeEEEccCCeEEeec
Confidence 98743322 224588999999999999999999999999999977666 4555545665 578899999999999999
Q ss_pred eCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCC-----cceEEEEECCCCCEEEEEc-CCCeEEEEECCCC
Q 016982 163 STDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSF-----SWAFGVKWSPSGNTLAYVG-HNSMIYFVDDVGP 236 (379)
Q Consensus 163 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~sp~~~~l~~~~-~d~~i~v~d~~~~ 236 (379)
+.|..+++|.+ .++.++..+.+.. .--+...|+....+++.-. ..+.++-||.++.
T Consensus 324 G~DS~vkLWEi------------------~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRta 385 (430)
T KOG0640|consen 324 GKDSTVKLWEI------------------STGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTA 385 (430)
T ss_pred CCcceeeeeee------------------cCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccch
Confidence 99999999997 6788888776541 1234567888888887765 4578999999987
Q ss_pred CceeeeeeeecCCeeeEEEecCCcEE-EEEeCCCeEEEEec
Q 016982 237 SPLAQNVAFRDLPLRDVLFVSEKMVI-GVGFDCNPMVFAAD 276 (379)
Q Consensus 237 ~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~d~~~~i~~~~ 276 (379)
......-.+|++.+..+.-||.+..+ .++.|...++|...
T Consensus 386 dr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 386 DRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred hhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 66544556899999999999987654 57778899998743
No 114
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=4.7e-28 Score=198.34 Aligned_cols=249 Identities=10% Similarity=0.124 Sum_probs=192.8
Q ss_pred CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceE----------EEEEeccCCCceEEEEEcCCC-CEEEEEeCCCeE
Q 016982 10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWE----------KLHVLQKHDQIVSGIDWSVRS-NRIVTVSHDRNS 78 (379)
Q Consensus 10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~----------~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i 78 (379)
...|.+++|++.|..|++.+.....+|+|...-.+. -....++|...++|.+|+|.. +.++|++.||++
T Consensus 214 ~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgtl 293 (641)
T KOG0772|consen 214 THQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTL 293 (641)
T ss_pred ccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcE
Confidence 468999999999998888888889999998764211 122346799999999999986 678999999999
Q ss_pred EEEeccCCce-eeeEEee---cCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCc--CEEEEEE
Q 016982 79 YVWNQEGSEW-VPTLVIL---RLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDS--SVTSVAW 152 (379)
Q Consensus 79 ~vw~~~~~~~-~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~--~v~~~~~ 152 (379)
++||++..+. ...+... +..-+++.++|+|+|+.||.|+.||.|.+|+....... ....+...|.. .|+|+.|
T Consensus 294 RiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~-p~~~vk~AH~~g~~Itsi~F 372 (641)
T KOG0772|consen 294 RIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVR-PVMKVKDAHLPGQDITSISF 372 (641)
T ss_pred EEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccc-cceEeeeccCCCCceeEEEe
Confidence 9999986532 2222211 23357899999999999999999999999998544321 12223367877 9999999
Q ss_pred cCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecC--CcceEEEEECCCCCEEEEEc------C
Q 016982 153 HPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS--FSWAFGVKWSPSGNTLAYVG------H 224 (379)
Q Consensus 153 ~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~sp~~~~l~~~~------~ 224 (379)
+++|++|++-+.|+++++||+ .+..+++....+- ..+-+.++|||+.+++++|. .
T Consensus 373 S~dg~~LlSRg~D~tLKvWDL-----------------rq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~ 435 (641)
T KOG0772|consen 373 SYDGNYLLSRGFDDTLKVWDL-----------------RQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMT 435 (641)
T ss_pred ccccchhhhccCCCceeeeec-----------------cccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCC
Confidence 999999999999999999998 3555666555433 23457899999999999985 3
Q ss_pred CCeEEEEECCCCCceeeeeeeecCCeeeEEEecC-CcEEEEEeCCCeEEEEecC
Q 016982 225 NSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSE-KMVIGVGFDCNPMVFAADE 277 (379)
Q Consensus 225 d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~d~~~~i~~~~~ 277 (379)
.|.+.+||..+-. .++.+......|..+.|+|. +++++++.||.+++|....
T Consensus 436 ~g~L~f~d~~t~d-~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~ 488 (641)
T KOG0772|consen 436 AGTLFFFDRMTLD-TVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDPN 488 (641)
T ss_pred CceEEEEecccee-eEEEecCCCceEEEEeecchhhheeeecCCCceEEEECcc
Confidence 5789999976654 45666666788999999995 6788889999999887543
No 115
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.96 E-value=5.4e-27 Score=179.32 Aligned_cols=300 Identities=16% Similarity=0.241 Sum_probs=208.8
Q ss_pred eccCcceeEEEeCC-CCcEEEEEecCCeEEEEEecCCc----------eEEE---EEeccCCCceEEEEEcCCC-CEEEE
Q 016982 7 HQFAQCITCHAWSP-DHAMVAFCPNNNEVHIYKLIQEK----------WEKL---HVLQKHDQIVSGIDWSVRS-NRIVT 71 (379)
Q Consensus 7 ~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~----------~~~~---~~~~~~~~~v~~~~~~~~~-~~l~~ 71 (379)
..|.+.|+++...+ .|+++++|+.||.|.+||+++.. ..++ ..-.+|.-.|.++.|-|-. -.+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 45889999999988 78999999999999999998642 0110 1123567789999999944 57788
Q ss_pred EeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCC---CCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEE
Q 016982 72 VSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPK---ENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVT 148 (379)
Q Consensus 72 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~ 148 (379)
++.|.++++||..+-+....+ ...+.|++-+++|- ..++|+|..+-.|++.|+..+. ....+ .+|.+.|.
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F---~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs---~sH~L-sGHr~~vl 192 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDF---KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS---FSHTL-SGHRDGVL 192 (397)
T ss_pred ccccceEEEeecccceeeEEe---ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc---ceeee-ccccCceE
Confidence 899999999999998755444 34788999999983 4578888889999999999998 56677 99999999
Q ss_pred EEEEcCCCc-EEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCe
Q 016982 149 SVAWHPNNV-FLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSM 227 (379)
Q Consensus 149 ~~~~~p~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~ 227 (379)
++.|+|... .|++|+.||.|++||++...--++...... ......++.-..|.+.++.++|+.++.++++.+.|..
T Consensus 193 aV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn---~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r 269 (397)
T KOG4283|consen 193 AVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHN---TKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDR 269 (397)
T ss_pred EEEeccCceeEEEecCCCceEEEEEeecccceeEEeeccc---CccCccccccccccceeeeeeecccchhhhhccCccc
Confidence 999999875 577899999999999842111111000000 0011122234567788999999999999999999999
Q ss_pred EEEEECCCCCceeeeee--eecCCeeeEEEe---cC-CcEEEEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCC
Q 016982 228 IYFVDDVGPSPLAQNVA--FRDLPLRDVLFV---SE-KMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGS 301 (379)
Q Consensus 228 i~v~d~~~~~~~~~~~~--~~~~~i~~~~~s---~~-~~~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (379)
+++|+..++......+- .|+.. .++.+. -+ +.++..-.++.+.+++.-+.. .++
T Consensus 270 ~r~wn~~~G~ntl~~~g~~~~n~~-~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs---~ir---------------- 329 (397)
T KOG4283|consen 270 IRVWNMESGRNTLREFGPIIHNQT-TSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGS---FVR---------------- 329 (397)
T ss_pred eEEeecccCccccccccccccccc-ccceEEEeecccceEEEEecCCeEEEEEccCce---EEE----------------
Confidence 99999888764322221 11111 122221 11 122223333444444332211 111
Q ss_pred CcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeC
Q 016982 302 QFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDL 368 (379)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~ 368 (379)
.+.+|-..|.|.. +.++- +...+|..|+.|..|-.
T Consensus 330 ---------------------------~l~~h~k~i~c~~-~~~~f----q~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 330 ---------------------------RLSTHLKRINCAA-YRPDF----EQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ---------------------------eeecccceeeEEe-ecCch----hhhhccccCCccccccc
Confidence 4467888888877 66554 78999999999999976
No 116
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=6.3e-28 Score=204.16 Aligned_cols=249 Identities=17% Similarity=0.214 Sum_probs=209.4
Q ss_pred eEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeE-EEECC-CCCEEEEEeCCCe
Q 016982 44 WEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALC-VQWSP-KENKFAVGSGAKT 121 (379)
Q Consensus 44 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~-~~~~~-~~~~l~~~~~d~~ 121 (379)
.+..+.+.+|...|..+++.+.. .+++++.||++++|+-..+++.....+.++.+-+.. +++-+ ++-.+++|+.|.+
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred ceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence 46778899999999999887554 889999999999999988888776666777777766 88876 4556999999999
Q ss_pred EEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEee
Q 016982 122 VCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD 201 (379)
Q Consensus 122 v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (379)
+.+|......+ ...+ .+|...|.+++...++. +++|+.|.++++|.. +++...++
T Consensus 83 i~v~~~~~~~P---~~~L-kgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--------------------~~l~~~l~ 137 (745)
T KOG0301|consen 83 IIVFKLSQAEP---LYTL-KGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--------------------GELVYSLQ 137 (745)
T ss_pred EEEEecCCCCc---hhhh-hccccceeeeecCCcCc-eEecccccceEEecc--------------------hhhhcccC
Confidence 99999888773 5556 89999999999877777 999999999999954 78888899
Q ss_pred cCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcE
Q 016982 202 LSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIW 281 (379)
Q Consensus 202 ~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~ 281 (379)
+|...|++++.-|++ .+++|+.|.+|++|.- ..+++++.+|..-|+.+++-+++.++.++.|+.|++|+.++....
T Consensus 138 gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~---~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~ 213 (745)
T KOG0301|consen 138 GHTASVWAVASLPEN-TYVTGSADKTIKLWKG---GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLL 213 (745)
T ss_pred CcchheeeeeecCCC-cEEeccCcceeeeccC---CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEeccCceee
Confidence 999999999999988 6889999999999974 235689999999999999999999999999999999998654322
Q ss_pred EEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCc
Q 016982 282 TFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDG 361 (379)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg 361 (379)
. +.||++-|.++... .+. ..++|+|+|+
T Consensus 214 ~-----------------------------------------------~~ghtn~vYsis~~-~~~----~~Ivs~gEDr 241 (745)
T KOG0301|consen 214 E-----------------------------------------------MHGHTNFVYSISMA-LSD----GLIVSTGEDR 241 (745)
T ss_pred e-----------------------------------------------eeccceEEEEEEec-CCC----CeEEEecCCc
Confidence 2 25899999999943 333 6999999999
Q ss_pred eEEEEeCCCcccccc
Q 016982 362 KIVTWDLESQEDLLN 376 (379)
Q Consensus 362 ~v~iW~~~~~~~~~~ 376 (379)
++|||+.. ++.|.
T Consensus 242 tlriW~~~--e~~q~ 254 (745)
T KOG0301|consen 242 TLRIWKKD--ECVQV 254 (745)
T ss_pred eEEEeecC--ceEEE
Confidence 99999987 44443
No 117
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=3e-27 Score=181.18 Aligned_cols=257 Identities=18% Similarity=0.201 Sum_probs=186.5
Q ss_pred cCCCceEEEEEcC-CCCEEEEEeCCCeEEEEeccC-CceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeec
Q 016982 52 KHDQIVSGIDWSV-RSNRIVTVSHDRNSYVWNQEG-SEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQ 129 (379)
Q Consensus 52 ~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~ 129 (379)
...+.|.+|+||| ...+++.++.|++|++|+++. +...+. ....|.++|.+++|+.||..+++|+.|+.+++||+.+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~k-a~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPK-AQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccch-hhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence 3467899999999 456677899999999999987 454443 3367899999999999999999999999999999999
Q ss_pred CCceeEEEEEeecCCcCEEEEEEcCCCc--EEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcce
Q 016982 130 ENNWWVSKLIRKRHDSSVTSVAWHPNNV--FLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWA 207 (379)
Q Consensus 130 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~--~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 207 (379)
++ ...+ ..|.++|..+.|-+... .|+||+.|.+|+.||+ +...++.+++. ...+
T Consensus 104 ~Q----~~~v-~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~------------------R~~~pv~t~~L-PeRv 159 (347)
T KOG0647|consen 104 GQ----VSQV-AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDT------------------RSSNPVATLQL-PERV 159 (347)
T ss_pred CC----eeee-eecccceeEEEEecCCCcceeEecccccceeeccc------------------CCCCeeeeeec-ccee
Confidence 97 3444 68999999999987664 8999999999999997 56667776655 3445
Q ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeee-eecCCeeeEEEecCCc-EEEEEeCCCeEEEEecCCCc-EEEE
Q 016982 208 FGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVA-FRDLPLRDVLFVSEKM-VIGVGFDCNPMVFAADETGI-WTFI 284 (379)
Q Consensus 208 ~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~i~~~~~s~~~~-~l~~~~d~~~~i~~~~~~~~-~~~~ 284 (379)
.++..- ..+++++..++.|.+|+++++....+... .-...+++++..+|.. ++.++-+|.+.+...+.... -++.
T Consensus 160 Ya~Dv~--~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFt 237 (347)
T KOG0647|consen 160 YAADVL--YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFT 237 (347)
T ss_pred eehhcc--CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCcee
Confidence 555432 45677888899999999987653322222 1234578888877765 44588899998888776321 1111
Q ss_pred EEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEE
Q 016982 285 KFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIV 364 (379)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~ 364 (379)
-......... .+.-=.|++|+|++.. ..|+|+|.||+..
T Consensus 238 FkCHR~~~~~------------------------------------~~~VYaVNsi~FhP~h-----gtlvTaGsDGtf~ 276 (347)
T KOG0647|consen 238 FKCHRSTNSV------------------------------------NDDVYAVNSIAFHPVH-----GTLVTAGSDGTFS 276 (347)
T ss_pred EEEeccCCCC------------------------------------CCceEEecceEeeccc-----ceEEEecCCceEE
Confidence 0000000000 0001158889976544 5999999999999
Q ss_pred EEeCCCcccccc
Q 016982 365 TWDLESQEDLLN 376 (379)
Q Consensus 365 iW~~~~~~~~~~ 376 (379)
+||-.....|+.
T Consensus 277 FWDkdar~kLk~ 288 (347)
T KOG0647|consen 277 FWDKDARTKLKT 288 (347)
T ss_pred Eecchhhhhhhc
Confidence 999887776654
No 118
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=2.7e-27 Score=181.97 Aligned_cols=243 Identities=12% Similarity=0.126 Sum_probs=184.8
Q ss_pred CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCcee
Q 016982 10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWV 89 (379)
Q Consensus 10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~ 89 (379)
.+.|+.+.|+|.++.|++++.||.+++|+.... .....+ .|..++.+++|.+ ...+++|+.||.|+++|+.+++
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~--~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~-- 86 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN--SLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN-- 86 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccch--hhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCCc--
Confidence 578999999999999999999999999999886 333333 4888999999987 4588999999999999999986
Q ss_pred eeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEE
Q 016982 90 PTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCR 169 (379)
Q Consensus 90 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~ 169 (379)
...+..|..++.++.+++....+++|+.|++|++||.+... .... ......|.++.. .++.|++|+.+..+.
T Consensus 87 -~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~---~~~~--~d~~kkVy~~~v--~g~~LvVg~~~r~v~ 158 (323)
T KOG1036|consen 87 -EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV---VVGT--FDQGKKVYCMDV--SGNRLVVGTSDRKVL 158 (323)
T ss_pred -ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc---cccc--cccCceEEEEec--cCCEEEEeecCceEE
Confidence 44457799999999999988899999999999999998643 1222 234457888876 577899999999999
Q ss_pred EEeccccccccccccCCCc------------------------------cCCcccceEEEeecCC---------cceEEE
Q 016982 170 VFSTFIKGVDIKEKKEGTS------------------------------SDTKFGEQILQLDLSF---------SWAFGV 210 (379)
Q Consensus 170 v~d~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~---------~~v~~~ 210 (379)
+||++............+. ......+....|..|. .+|+++
T Consensus 159 iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai 238 (323)
T KOG1036|consen 159 IYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAI 238 (323)
T ss_pred EEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEecee
Confidence 9998632222100000000 0000111223344442 369999
Q ss_pred EECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEeC
Q 016982 211 KWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFD 267 (379)
Q Consensus 211 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d 267 (379)
+|+|-...|++|+.||.|.+||+.+.+.+ ..+......|.+++|+.+|..||.+.+
T Consensus 239 ~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl-~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 239 AFHPIHGTFATGGSDGIVNIWDLFNRKRL-KQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EeccccceEEecCCCceEEEccCcchhhh-hhccCCCCceEEEEeccCCCeEEEEec
Confidence 99999999999999999999999887755 555555677999999999999997654
No 119
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.6e-28 Score=179.76 Aligned_cols=255 Identities=20% Similarity=0.219 Sum_probs=199.5
Q ss_pred eccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCce-eeeEEeecCCCceeEEEECC--CCCEEEEEeCCCeEEEEE
Q 016982 50 LQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEW-VPTLVILRLNRAALCVQWSP--KENKFAVGSGAKTVCICY 126 (379)
Q Consensus 50 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~-~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~i~~ 126 (379)
-..|.+.|..+...-.|++|+|++.|++|+|+.++.... ....++.+|.++|..++|.. -|.+||+++.||.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 356888888888777899999999999999999987654 55667789999999999965 799999999999999998
Q ss_pred eecCCceeEEEEEeecCCcCEEEEEEcCCC--cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCC
Q 016982 127 YEQENNWWVSKLIRKRHDSSVTSVAWHPNN--VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSF 204 (379)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (379)
-..+ .|...... ..|...|++++|.|.+ -.|++++.||.|.|.+.... ......+....|.
T Consensus 87 e~~g-~w~k~~e~-~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~---------------g~w~t~ki~~aH~ 149 (299)
T KOG1332|consen 87 EENG-RWTKAYEH-AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS---------------GGWTTSKIVFAHE 149 (299)
T ss_pred cCCC-chhhhhhh-hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCC---------------CCccchhhhhccc
Confidence 7776 34333333 6899999999999964 78899999999999987310 0011223346788
Q ss_pred cceEEEEECCC---C-----------CEEEEEcCCCeEEEEECCCCCc-eeeeeeeecCCeeeEEEecCC----cEEE-E
Q 016982 205 SWAFGVKWSPS---G-----------NTLAYVGHNSMIYFVDDVGPSP-LAQNVAFRDLPLRDVLFVSEK----MVIG-V 264 (379)
Q Consensus 205 ~~v~~~~~sp~---~-----------~~l~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~i~~~~~s~~~----~~l~-~ 264 (379)
-.|+++.|.|- | +.|++|+.|..|+||+.....- +.+++.+|...|+.++|.|.- ..|| +
T Consensus 150 ~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~ 229 (299)
T KOG1332|consen 150 IGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASC 229 (299)
T ss_pred cccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEe
Confidence 88999999995 5 5699999999999999877532 234588999999999999953 3566 7
Q ss_pred EeCCCeEEEEecCC-CcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeee
Q 016982 265 GFDCNPMVFAADET-GIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPL 343 (379)
Q Consensus 265 ~~d~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 343 (379)
+.|+++.||..+.+ +.|+.. .+......+..+. +
T Consensus 230 SqDg~viIwt~~~e~e~wk~t--------------------------------------------ll~~f~~~~w~vS-W 264 (299)
T KOG1332|consen 230 SQDGTVIIWTKDEEYEPWKKT--------------------------------------------LLEEFPDVVWRVS-W 264 (299)
T ss_pred cCCCcEEEEEecCccCccccc--------------------------------------------ccccCCcceEEEE-E
Confidence 88999999998754 345431 1122345688888 7
Q ss_pred cccCCcccceEEEeecCceEEEEeCCC
Q 016982 344 REAGSSRITRFTTSGLDGKIVTWDLES 370 (379)
Q Consensus 344 ~~~~~~~~~~l~t~~~Dg~v~iW~~~~ 370 (379)
+..| .+|+.++.|..|.+|.-+.
T Consensus 265 S~sG----n~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 265 SLSG----NILAVSGGDNKVTLWKENV 287 (299)
T ss_pred eccc----cEEEEecCCcEEEEEEeCC
Confidence 7666 8999999999999998654
No 120
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.96 E-value=1.5e-25 Score=188.98 Aligned_cols=274 Identities=12% Similarity=0.094 Sum_probs=192.9
Q ss_pred CcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEE-EEEeCCCeEEEEeccCCceeeeEEeecCCCc
Q 016982 22 HAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRI-VTVSHDRNSYVWNQEGSEWVPTLVILRLNRA 100 (379)
Q Consensus 22 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~ 100 (379)
++.+++++.|+.|++||+.++ +.+..+..+. .+.+++|+|+++.+ ++++.++.|++||..+++....+. . ...
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~--~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--~-~~~ 74 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATL--EVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP--S-GPD 74 (300)
T ss_pred CcEEEEecCCCEEEEEECCCC--ceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc--C-CCC
Confidence 357889999999999999887 5666676554 36789999999876 566788999999999887554432 2 234
Q ss_pred eeEEEECCCCCEEEEE-eCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCC-eEEEEecccccc
Q 016982 101 ALCVQWSPKENKFAVG-SGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDG-KCRVFSTFIKGV 178 (379)
Q Consensus 101 v~~~~~~~~~~~l~~~-~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~-~i~v~d~~~~~~ 178 (379)
+..++|+|+++.++++ ..++.+++||+.+.. ....+ .+...+.+++|+|++++++++..++ .+.+||.
T Consensus 75 ~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~---~~~~~--~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~----- 144 (300)
T TIGR03866 75 PELFALHPNGKILYIANEDDNLVTVIDIETRK---VLAEI--PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDT----- 144 (300)
T ss_pred ccEEEECCCCCEEEEEcCCCCeEEEEECCCCe---EEeEe--eCCCCcceEEECCCCCEEEEEecCCCeEEEEeC-----
Confidence 5778999999977665 458999999998765 23333 2234467899999999999888765 4667785
Q ss_pred ccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEE-cCCCeEEEEECCCCCceeeeeeeec-------CCe
Q 016982 179 DIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYV-GHNSMIYFVDDVGPSPLAQNVAFRD-------LPL 250 (379)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~-------~~i 250 (379)
.+.+....+.. ...+..++|+|++++|+++ ..++.|++||+.+++. ...+..+. ...
T Consensus 145 -------------~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~-~~~~~~~~~~~~~~~~~~ 209 (300)
T TIGR03866 145 -------------KTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV-IKKITFEIPGVHPEAVQP 209 (300)
T ss_pred -------------CCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee-eeeeeecccccccccCCc
Confidence 33444433322 2345789999999988655 4689999999988653 23333211 123
Q ss_pred eeEEEecCCcEEE--EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccc
Q 016982 251 RDVLFVSEKMVIG--VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRT 328 (379)
Q Consensus 251 ~~~~~s~~~~~l~--~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (379)
..++|+|+++++. .+.++.+.+|+.... ++....
T Consensus 210 ~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~---~~~~~~----------------------------------------- 245 (300)
T TIGR03866 210 VGIKLTKDGKTAFVALGPANRVAVVDAKTY---EVLDYL----------------------------------------- 245 (300)
T ss_pred cceEECCCCCEEEEEcCCCCeEEEEECCCC---cEEEEE-----------------------------------------
Confidence 4688999998754 345667888876532 222111
Q ss_pred cccccccceeeeeeecccCCcccceEEEe-ecCceEEEEeCCCccccccCC
Q 016982 329 RGGTHVNCINCIVPLREAGSSRITRFTTS-GLDGKIVTWDLESQEDLLNYH 378 (379)
Q Consensus 329 ~~~~h~~~v~~~~~~~~~~~~~~~~l~t~-~~Dg~v~iW~~~~~~~~~~~~ 378 (379)
.+...+.+++ |++++ .+|+++ +.+|.|++||+.+++.++.+.
T Consensus 246 ---~~~~~~~~~~-~~~~g----~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 246 ---LVGQRVWQLA-FTPDE----KYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred ---EeCCCcceEE-ECCCC----CEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 1233577888 77666 777765 579999999999998876653
No 121
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=4e-27 Score=190.58 Aligned_cols=291 Identities=12% Similarity=0.081 Sum_probs=209.0
Q ss_pred CeEEEEEecCCceEEEEEeccC-CCceEEEEEcCCCCEEEEEeC-CCeEEEEeccCCceeeeEEeecCCCceeEEEECCC
Q 016982 32 NEVHIYKLIQEKWEKLHVLQKH-DQIVSGIDWSVRSNRIVTVSH-DRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPK 109 (379)
Q Consensus 32 g~i~i~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 109 (379)
..+.+||+.++ ....++++. ...-.++..- .+++++++.. -..+.+|.+......... .-.++++.+++-+|+
T Consensus 18 ~~~~~~dl~TG--t~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~--~v~Pg~v~al~s~n~ 92 (476)
T KOG0646|consen 18 INCIVWDLRTG--TSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQY--IVLPGPVHALASSNL 92 (476)
T ss_pred cceeEEecCCC--ceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhh--cccccceeeeecCCC
Confidence 45999999998 455555543 1111122211 2356666653 346899998776533311 224688999999999
Q ss_pred CCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCcc
Q 016982 110 ENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSS 189 (379)
Q Consensus 110 ~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 189 (379)
|.+++.|+..|.+++|.+.++. +...+ ..|...|+|+.|+-||.+|++|+.||.|.+|.+.. .-....
T Consensus 93 G~~l~ag~i~g~lYlWelssG~---LL~v~-~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~----lv~a~~---- 160 (476)
T KOG0646|consen 93 GYFLLAGTISGNLYLWELSSGI---LLNVL-SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTD----LVSADN---- 160 (476)
T ss_pred ceEEEeecccCcEEEEEecccc---HHHHH-HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEe----eccccc----
Confidence 9999999899999999999998 45666 89999999999999999999999999999998731 111000
Q ss_pred CCcccceEEEeecCCcceEEEEECCC--CCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEe
Q 016982 190 DTKFGEQILQLDLSFSWAFGVKWSPS--GNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGF 266 (379)
Q Consensus 190 ~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~ 266 (379)
..+.++++.+..|.-+|+++...+. ..+|+++|.|.++++||+..+. ++..+. ...++.+++.+|-++.+. ++.
T Consensus 161 -~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~-LLlti~-fp~si~av~lDpae~~~yiGt~ 237 (476)
T KOG0646|consen 161 -DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV-LLLTIT-FPSSIKAVALDPAERVVYIGTE 237 (476)
T ss_pred -CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce-eeEEEe-cCCcceeEEEcccccEEEecCC
Confidence 1256778889999999999988875 4579999999999999999886 444444 467899999999877665 667
Q ss_pred CCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCccccccccccccccccc--ceeeeeeec
Q 016982 267 DCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVN--CINCIVPLR 344 (379)
Q Consensus 267 d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~ 344 (379)
+|.+.+..+....... ..+... ++ .........+.||.+ .|+|++ .+
T Consensus 238 ~G~I~~~~~~~~~~~~--~~v~~k-----------~~-----------------~~~~t~~~~~~Gh~~~~~ITcLa-is 286 (476)
T KOG0646|consen 238 EGKIFQNLLFKLSGQS--AGVNQK-----------GR-----------------HEENTQINVLVGHENESAITCLA-IS 286 (476)
T ss_pred cceEEeeehhcCCccc--cccccc-----------cc-----------------ccccceeeeeccccCCcceeEEE-Ee
Confidence 8887766644311000 000000 00 000001114478988 999999 88
Q ss_pred ccCCcccceEEEeecCceEEEEeCCCccccccC
Q 016982 345 EAGSSRITRFTTSGLDGKIVTWDLESQEDLLNY 377 (379)
Q Consensus 345 ~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~~~~ 377 (379)
.|| .+|++|+.||.|+|||+.+.++++.+
T Consensus 287 ~Dg----tlLlSGd~dg~VcvWdi~S~Q~iRtl 315 (476)
T KOG0646|consen 287 TDG----TLLLSGDEDGKVCVWDIYSKQCIRTL 315 (476)
T ss_pred cCc----cEEEeeCCCCCEEEEecchHHHHHHH
Confidence 777 99999999999999999999988765
No 122
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.9e-27 Score=191.39 Aligned_cols=239 Identities=15% Similarity=0.080 Sum_probs=195.3
Q ss_pred CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc-----
Q 016982 10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE----- 84 (379)
Q Consensus 10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~----- 84 (379)
.++|.|++-+|+|.+|+.|+..|.|++|.+.++ ..+..+.+|-..|+++.|+-||.+|+||+.||.|.+|.+.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG--~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a 158 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSG--ILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSA 158 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccc--cHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccc
Confidence 678999999999999999989999999999998 7888899999999999999999999999999999999863
Q ss_pred --CCceeeeEEeecCCCceeEEEECCC--CCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEE
Q 016982 85 --GSEWVPTLVILRLNRAALCVQWSPK--ENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLA 160 (379)
Q Consensus 85 --~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 160 (379)
+....+...+..|.-+|+++...+- ..++++++.|.++++||+..+. +...+ .....+.+++.+|-++.+.
T Consensus 159 ~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~---LLlti--~fp~si~av~lDpae~~~y 233 (476)
T KOG0646|consen 159 DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV---LLLTI--TFPSSIKAVALDPAERVVY 233 (476)
T ss_pred ccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce---eeEEE--ecCCcceeEEEcccccEEE
Confidence 2244455566789999999988764 4689999999999999999986 33333 5677899999999999999
Q ss_pred EeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCc--ceEEEEECCCCCEEEEEcCCCeEEEEECCCCCc
Q 016982 161 TTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFS--WAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSP 238 (379)
Q Consensus 161 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~ 238 (379)
.|+.+|.|.+.++....-..+ .-. .......+..+..+.+|.+ .|++++.+-||.+|++|+.||.++|||+.+.+
T Consensus 234 iGt~~G~I~~~~~~~~~~~~~-~v~-~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q- 310 (476)
T KOG0646|consen 234 IGTEEGKIFQNLLFKLSGQSA-GVN-QKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ- 310 (476)
T ss_pred ecCCcceEEeeehhcCCcccc-ccc-ccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH-
Confidence 999999999988742110000 000 0001234566777888887 99999999999999999999999999988754
Q ss_pred eeeeeeeecCCeeeEEEecC
Q 016982 239 LAQNVAFRDLPLRDVLFVSE 258 (379)
Q Consensus 239 ~~~~~~~~~~~i~~~~~s~~ 258 (379)
+++++....++|+.+.+.|-
T Consensus 311 ~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 311 CIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred HHHHHhhhccccceeEeecc
Confidence 66777656789999998664
No 123
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.7e-26 Score=192.52 Aligned_cols=294 Identities=15% Similarity=0.230 Sum_probs=218.5
Q ss_pred cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCC--EEEEEeCCCeEEEE
Q 016982 4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSN--RIVTVSHDRNSYVW 81 (379)
Q Consensus 4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~vw 81 (379)
..+.+|.+.|.|++..|.|..||+|+.||+|+||.+.++ .++.++. ..+.|.|++|+|.+. .||++- +..+.+.
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg--Rcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~-~~~~~iv 469 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATG--RCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAV-GECVLIV 469 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecc--eEEEEEe-ecceeEEEEecCCCCceeEEEEe-cCceEEe
Confidence 457899999999999999999999999999999999998 7777766 356899999999874 344433 2234443
Q ss_pred ec---------------------------------cCCc--eeeeEEeecCCCceeEEEECCCCCEEEEEeC---CCeEE
Q 016982 82 NQ---------------------------------EGSE--WVPTLVILRLNRAALCVQWSPKENKFAVGSG---AKTVC 123 (379)
Q Consensus 82 ~~---------------------------------~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~v~ 123 (379)
+. ...+ .........|...|..+.|+..|.+|++... ...|.
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 32 1100 0001122457788999999999999999865 35688
Q ss_pred EEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecC
Q 016982 124 ICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS 203 (379)
Q Consensus 124 i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (379)
|+++..... ...+ ....+.+.++.|+|...+|++++ ...|+|||+ .....++.+...
T Consensus 550 iHQLSK~~s---Q~PF-~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL------------------~kqelvKkL~tg 606 (733)
T KOG0650|consen 550 IHQLSKRKS---QSPF-RKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDL------------------SKQELVKKLLTG 606 (733)
T ss_pred EEecccccc---cCch-hhcCCceeEEEecCCCceEEEEe-ccceEEEeh------------------hHHHHHHHHhcC
Confidence 888877652 3333 45667899999999998888776 457999997 345555666556
Q ss_pred CcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEeC-CCeEEEEecCCCcEE
Q 016982 204 FSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFD-CNPMVFAADETGIWT 282 (379)
Q Consensus 204 ~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d-~~~~i~~~~~~~~~~ 282 (379)
...|..++.+|.|..|+.++.|+.+..||+.-.....+++..|...+++++|++.-.++++++| +.+.+|...-.. +
T Consensus 607 ~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~--D 684 (733)
T KOG0650|consen 607 SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYN--D 684 (733)
T ss_pred CeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeeh--h
Confidence 7789999999999999999999999999998877677889999999999999999899996655 788887633111 1
Q ss_pred EEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccc----eeeeeeecccCCcccceEEEee
Q 016982 283 FIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNC----INCIVPLREAGSSRITRFTTSG 358 (379)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~----v~~~~~~~~~~~~~~~~l~t~~ 358 (379)
+.+ ++. .- +...+.||... |..+.|+ |...+|.|+|
T Consensus 685 l~q------npl------------iV-----------------PlK~L~gH~~~~~~gVLd~~wH-----P~qpWLfsAG 724 (733)
T KOG0650|consen 685 LLQ------NPL------------IV-----------------PLKRLRGHEKTNDLGVLDTIWH-----PRQPWLFSAG 724 (733)
T ss_pred hhc------CCc------------eE-----------------eeeeccCceeecccceEeeccc-----CCCceEEecC
Confidence 100 000 00 11145788665 8888855 4447999999
Q ss_pred cCceEEEE
Q 016982 359 LDGKIVTW 366 (379)
Q Consensus 359 ~Dg~v~iW 366 (379)
.||+||+|
T Consensus 725 Ad~tirlf 732 (733)
T KOG0650|consen 725 ADGTIRLF 732 (733)
T ss_pred CCceEEee
Confidence 99999998
No 124
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.6e-28 Score=208.89 Aligned_cols=240 Identities=18% Similarity=0.262 Sum_probs=191.7
Q ss_pred eeEEEeCC-CCcEEEEEecCCeEEEEEecCC-ceEEEEEeccCCCceEEEEEcCCC-CEEEEEeCCCeEEEEeccCCcee
Q 016982 13 ITCHAWSP-DHAMVAFCPNNNEVHIYKLIQE-KWEKLHVLQKHDQIVSGIDWSVRS-NRIVTVSHDRNSYVWNQEGSEWV 89 (379)
Q Consensus 13 i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~vw~~~~~~~~ 89 (379)
+..|.|+. +.++||+++..|.|.+||+... .-+.+..|..|...++++.|++.. ++|++|+.||+|++||++..+-.
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~ 169 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK 169 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc
Confidence 44566764 5578999999999999999862 125667889999999999999865 78899999999999999988755
Q ss_pred eeEEeecCCCceeEEEECC-CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeE
Q 016982 90 PTLVILRLNRAALCVQWSP-KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKC 168 (379)
Q Consensus 90 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i 168 (379)
..+ ......|.++.|+| .+..++++.+.|.+++||++....+ ...+ ..|.++|.|+.|+|++.+||+|+.|+.|
T Consensus 170 ~t~--~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~--~~k~-~AH~GpV~c~nwhPnr~~lATGGRDK~v 244 (839)
T KOG0269|consen 170 STF--RSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRC--EKKL-TAHNGPVLCLNWHPNREWLATGGRDKMV 244 (839)
T ss_pred ccc--cccchhhhceeeccCCCceEEEecCCceEEEeeccCchhH--HHHh-hcccCceEEEeecCCCceeeecCCCccE
Confidence 554 55678999999999 6889999999999999999987752 3344 7899999999999999999999999999
Q ss_pred EEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCE-EEEEc--CCCeEEEEECCCCCceeeeeee
Q 016982 169 RVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNT-LAYVG--HNSMIYFVDDVGPSPLAQNVAF 245 (379)
Q Consensus 169 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~~~--~d~~i~v~d~~~~~~~~~~~~~ 245 (379)
+|||... .....+.++.. ..++..+.|-|...+ |++++ .|-.|+|||++.+.-...++..
T Consensus 245 kiWd~t~----------------~~~~~~~tInT-iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~e 307 (839)
T KOG0269|consen 245 KIWDMTD----------------SRAKPKHTINT-IAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLE 307 (839)
T ss_pred EEEeccC----------------CCccceeEEee-cceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeec
Confidence 9999721 12233344433 567999999997655 66655 5789999999998777788889
Q ss_pred ecCCeeeEEEecCC--cEEEEEeCCCeEEEE
Q 016982 246 RDLPLRDVLFVSEK--MVIGVGFDCNPMVFA 274 (379)
Q Consensus 246 ~~~~i~~~~~s~~~--~~l~~~~d~~~~i~~ 274 (379)
|...++.++|.... .++.++.|+.+..-.
T Consensus 308 H~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~ 338 (839)
T KOG0269|consen 308 HTDSVTGIAWDSGDRINLWSCSKDGTVLQHL 338 (839)
T ss_pred cCccccceeccCCCceeeEeecCccHHHHhh
Confidence 99999999997732 244477777765443
No 125
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=8.3e-26 Score=173.77 Aligned_cols=274 Identities=18% Similarity=0.263 Sum_probs=192.5
Q ss_pred ccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccC--CceeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCeEEEEE
Q 016982 51 QKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEG--SEWVPTLVILRLNRAALCVQWSP--KENKFAVGSGAKTVCICY 126 (379)
Q Consensus 51 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~--~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~i~~ 126 (379)
.+|.+-|+++.|.+.|+++++|+.|++|+|||.+. +.+...-....|.+.|..+.|.+ -|+.+|+++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 46888999999999999999999999999999654 45555555677999999999966 489999999999999997
Q ss_pred eecC------CceeEEEEEeecCCcCEEEEEEcCC--CcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEE
Q 016982 127 YEQE------NNWWVSKLIRKRHDSSVTSVAWHPN--NVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQIL 198 (379)
Q Consensus 127 ~~~~------~~~~~~~~~~~~~~~~v~~~~~~p~--~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (379)
-... ..|.....+ ......|+++.|.|. |-.|++++.||.++||+.- ............
T Consensus 90 E~~~~~~~~~~~Wv~~ttl-~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~------------dp~nLs~W~Lq~ 156 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTL-VDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAP------------DPMNLSQWTLQH 156 (361)
T ss_pred ecccccccccceeEEEEEe-ecCCcceeEEEecchhcceEEEEeccCcEEEEEecC------------Cccccccchhhh
Confidence 5221 234444455 677889999999995 6789999999999999851 001112222223
Q ss_pred Eee-------cCCcceEEEEECCC---CCEEEEEcCC-----CeEEEEECCCCC---ceeeeeeeecCCeeeEEEecC-C
Q 016982 199 QLD-------LSFSWAFGVKWSPS---GNTLAYVGHN-----SMIYFVDDVGPS---PLAQNVAFRDLPLRDVLFVSE-K 259 (379)
Q Consensus 199 ~~~-------~~~~~v~~~~~sp~---~~~l~~~~~d-----~~i~v~d~~~~~---~~~~~~~~~~~~i~~~~~s~~-~ 259 (379)
++. .+..+..|+.|+|. ..+|+.|+.+ +.++||...... ..+..+..|..+|++++|.|+ |
T Consensus 157 Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~G 236 (361)
T KOG2445|consen 157 EIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIG 236 (361)
T ss_pred hhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccC
Confidence 332 34556789999984 5678888755 478899765543 133566688999999999995 3
Q ss_pred ---cEEEE-EeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCccccccccccccccccc
Q 016982 260 ---MVIGV-GFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVN 335 (379)
Q Consensus 260 ---~~l~~-~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 335 (379)
.+||+ +.|| ++||...... ..+. .++...+. .+..+ .-+....+.+|.+
T Consensus 237 r~y~~lAvA~kDg-v~I~~v~~~~--s~i~-~ee~~~~~-----------~~~~l------------~v~~vs~~~~H~~ 289 (361)
T KOG2445|consen 237 RSYHLLAVATKDG-VRIFKVKVAR--SAIE-EEEVLAPD-----------LMTDL------------PVEKVSELDDHNG 289 (361)
T ss_pred CceeeEEEeecCc-EEEEEEeecc--chhh-hhcccCCC-----------Ccccc------------ceEEeeeccCCCC
Confidence 46774 4555 9999865421 0000 00000000 00000 0012225678999
Q ss_pred ceeeeeeecccCCcccceEEEeecCceEEEEeCC
Q 016982 336 CINCIVPLREAGSSRITRFTTSGLDGKIVTWDLE 369 (379)
Q Consensus 336 ~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~ 369 (379)
+|..++ |+-.| ..|+|.|+||+||+|...
T Consensus 290 ~VWrv~-wNmtG----tiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 290 EVWRVR-WNMTG----TILSSTGDDGCVRLWKAN 318 (361)
T ss_pred ceEEEE-Eeeee----eEEeecCCCceeeehhhh
Confidence 999999 76555 899999999999999875
No 126
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.96 E-value=2.3e-25 Score=182.21 Aligned_cols=236 Identities=15% Similarity=0.200 Sum_probs=182.7
Q ss_pred CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCc--
Q 016982 10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSE-- 87 (379)
Q Consensus 10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~-- 87 (379)
+.-|.|++|.++|. +++|..+|.|.||+..+. +..+....|++.|.++....+|. |++|+.|..|..||-.-.+
T Consensus 246 kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~--~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~k~r 321 (626)
T KOG2106|consen 246 KKFVLCVTFLENGD-VITGDSGGNILIWSKGTN--RISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNYRKLR 321 (626)
T ss_pred ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCc--eEEeEeeecCCceEEEEEecCcc-EeecCccceEEeccccccccc
Confidence 36799999999887 678999999999998776 45555559999999999999885 4559999999999821100
Q ss_pred ---------ee---------------------------eeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCC
Q 016982 88 ---------WV---------------------------PTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQEN 131 (379)
Q Consensus 88 ---------~~---------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~ 131 (379)
.+ ..+...+|....+.++.+|+.+++++++.|+.+++|+ ..+
T Consensus 322 ~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k 399 (626)
T KOG2106|consen 322 ETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHK 399 (626)
T ss_pred cccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCc
Confidence 00 0122345677888999999999999999999999999 222
Q ss_pred ceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEE
Q 016982 132 NWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVK 211 (379)
Q Consensus 132 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 211 (379)
. .-. .....++.|+.|+|.| .++.|+..|...+.|+ ++...+ ++...+.+++.++
T Consensus 400 ~----~wt-~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~------------------e~~~lv-~~~~d~~~ls~v~ 454 (626)
T KOG2106|consen 400 L----EWT-KIIEDPAECADFHPSG-VVAVGTATGRWFVLDT------------------ETQDLV-TIHTDNEQLSVVR 454 (626)
T ss_pred e----eEE-EEecCceeEeeccCcc-eEEEeeccceEEEEec------------------ccceeE-EEEecCCceEEEE
Confidence 1 111 3345788999999999 9999999999999997 443333 3333378899999
Q ss_pred ECCCCCEEEEEcCCCeEEEEECCCCCceeeee-eeecCCeeeEEEecCCcEEEE-EeCCCeEEEEec
Q 016982 212 WSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNV-AFRDLPLRDVLFVSEKMVIGV-GFDCNPMVFAAD 276 (379)
Q Consensus 212 ~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~-~~d~~~~i~~~~ 276 (379)
|+|+|.+||.|+.|+.|++|-+..+......+ +.+..+|+.+.||+|++++.+ +.|-.+..|...
T Consensus 455 ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 455 YSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPS 521 (626)
T ss_pred EcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccc
Confidence 99999999999999999999887665443333 345689999999999999984 556678788443
No 127
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=1.9e-26 Score=177.31 Aligned_cols=248 Identities=16% Similarity=0.131 Sum_probs=186.1
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCce
Q 016982 54 DQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNW 133 (379)
Q Consensus 54 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~ 133 (379)
...|.++.|+|.++.|+.++.||.+++|++...+.... ..|..++.+++|.+ ...+++|+-||.|+.+|++++.
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~---~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~-- 86 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLK---FKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN-- 86 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhh---eecCCceeeeeccC-CceEEEeccCceEEEEEecCCc--
Confidence 56799999999999999999999999999988864333 35789999999997 5678999999999999999987
Q ss_pred eEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEEC
Q 016982 134 WVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWS 213 (379)
Q Consensus 134 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 213 (379)
...+ ..|..++.|+.+++-...+++|+.|++|++||. +.......+.. ...|.++..+
T Consensus 87 --~~~i-gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~------------------R~~~~~~~~d~-~kkVy~~~v~ 144 (323)
T KOG1036|consen 87 --EDQI-GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDP------------------RNKVVVGTFDQ-GKKVYCMDVS 144 (323)
T ss_pred --ceee-ccCCCceEEEEeeccCCeEEEcccCccEEEEec------------------ccccccccccc-CceEEEEecc
Confidence 3444 689999999999998889999999999999996 22333333333 3368777665
Q ss_pred CCCCEEEEEcCCCeEEEEECCCCCceeeeee-eecCCeeeEEEecCCc-EEEEEeCCCeEEEEecCCCcEEEEEEecccc
Q 016982 214 PSGNTLAYVGHNSMIYFVDDVGPSPLAQNVA-FRDLPLRDVLFVSEKM-VIGVGFDCNPMVFAADETGIWTFIKFLDERK 291 (379)
Q Consensus 214 p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~i~~~~~s~~~~-~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~ 291 (379)
|+.|++|+.+..+.+||+++.....+.-. .-...+.++++-|++. +++++-||.+.+=..+....-.-
T Consensus 145 --g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~s-------- 214 (323)
T KOG1036|consen 145 --GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQS-------- 214 (323)
T ss_pred --CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhh--------
Confidence 77899999999999999998765432211 2245689999999655 66688898876543333200000
Q ss_pred cCCCCCccCCCcccccceeeccccccCcccccccccccccccc---------cceeeeeeecccCCcccceEEEeecCce
Q 016982 292 TSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHV---------NCINCIVPLREAGSSRITRFTTSGLDGK 362 (379)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---------~~v~~~~~~~~~~~~~~~~l~t~~~Dg~ 362 (379)
.+| .+..|. =+|++|+|++ -...|||||.||.
T Consensus 215 ----------------kky------------------aFkCHr~~~~~~~~~yPVNai~Fhp-----~~~tfaTgGsDG~ 255 (323)
T KOG1036|consen 215 ----------------KKY------------------AFKCHRLSEKDTEIIYPVNAIAFHP-----IHGTFATGGSDGI 255 (323)
T ss_pred ----------------hce------------------eEEeeecccCCceEEEEeceeEecc-----ccceEEecCCCce
Confidence 000 111221 2799999553 2368999999999
Q ss_pred EEEEeCCCccccccCC
Q 016982 363 IVTWDLESQEDLLNYH 378 (379)
Q Consensus 363 v~iW~~~~~~~~~~~~ 378 (379)
|.+||+.+.+.++.|+
T Consensus 256 V~~Wd~~~rKrl~q~~ 271 (323)
T KOG1036|consen 256 VNIWDLFNRKRLKQLA 271 (323)
T ss_pred EEEccCcchhhhhhcc
Confidence 9999999988877653
No 128
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.96 E-value=3.6e-26 Score=193.60 Aligned_cols=303 Identities=15% Similarity=0.160 Sum_probs=230.7
Q ss_pred eeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCc--eEEEEE---eccCCCceEEEEEcCCCCEEEEEeCCCeEEE
Q 016982 6 VHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEK--WEKLHV---LQKHDQIVSGIDWSVRSNRIVTVSHDRNSYV 80 (379)
Q Consensus 6 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~--~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v 80 (379)
+.+|.+.|+++.|+|.+..|++++.|.++.+|...+.. |...-. +.+.........|+|+++.+++-+..|..++
T Consensus 263 l~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hl 342 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHL 342 (764)
T ss_pred hcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEE
Confidence 45999999999999999999999999999999987652 333322 2334456889999999999999999999999
Q ss_pred Eec-cCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCC-ce-------------------------
Q 016982 81 WNQ-EGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQEN-NW------------------------- 133 (379)
Q Consensus 81 w~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~-~~------------------------- 133 (379)
|.. +...+.....+.+|...|.+++|+|.|.+|++.+.|.+-++|---.++ .|
T Consensus 343 Wkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~F 422 (764)
T KOG1063|consen 343 WKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQF 422 (764)
T ss_pred EeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCcee
Confidence 983 334555666668899999999999999999999988877764322000 00
Q ss_pred --------------------------------------------------------------------------------
Q 016982 134 -------------------------------------------------------------------------------- 133 (379)
Q Consensus 134 -------------------------------------------------------------------------------- 133 (379)
T Consensus 423 VSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~e 502 (764)
T KOG1063|consen 423 VSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTE 502 (764)
T ss_pred eecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccC
Confidence
Q ss_pred -------------eEEEEEeecCCcCEEEEEEcCCCcEEEEeeCC-----CeEEEEeccccccccccccCCCccCCcccc
Q 016982 134 -------------WVSKLIRKRHDSSVTSVAWHPNNVFLATTSTD-----GKCRVFSTFIKGVDIKEKKEGTSSDTKFGE 195 (379)
Q Consensus 134 -------------~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 195 (379)
+..+.+ .+|...|.+++.+|+++++|+++.. ..|++|+. .+..
T Consensus 503 PP~EdqLq~~tLwPEv~KL-YGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t------------------~~W~ 563 (764)
T KOG1063|consen 503 PPTEDQLQQNTLWPEVHKL-YGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNT------------------ANWL 563 (764)
T ss_pred CChHHHHHHhccchhhHHh-ccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEec------------------cchh
Confidence 000011 3677789999999999999998864 35999986 6677
Q ss_pred eEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCce---eeeeeeecCCeeeEEEecCCcEEE-EEeCCCeE
Q 016982 196 QILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPL---AQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPM 271 (379)
Q Consensus 196 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~---~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~ 271 (379)
.++.+.+|.-.|+.++|||||++|++.+.|.++.+|........ ....+.|.--|+++.|+|++++++ ++.|..++
T Consensus 564 ~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~Vk 643 (764)
T KOG1063|consen 564 QVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVK 643 (764)
T ss_pred hhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEE
Confidence 77889999999999999999999999999999999986543221 223567888899999999999777 77899999
Q ss_pred EEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCccc
Q 016982 272 VFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRI 351 (379)
Q Consensus 272 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 351 (379)
+|...+.. -+.+.. + ....+...|+.+++.+.+....+
T Consensus 644 VW~~~~~~-d~~i~~-----------------------~------------------a~~~~~~aVTAv~~~~~~~~e~~ 681 (764)
T KOG1063|consen 644 VWEEPDLR-DKYISR-----------------------F------------------ACLKFSLAVTAVAYLPVDHNEKG 681 (764)
T ss_pred EEeccCch-hhhhhh-----------------------h------------------chhccCCceeeEEeecccccccc
Confidence 99876542 111110 0 01247789999997776663333
Q ss_pred ceEEEeecCceEEEEeCC
Q 016982 352 TRFTTSGLDGKIVTWDLE 369 (379)
Q Consensus 352 ~~l~t~~~Dg~v~iW~~~ 369 (379)
..++.|-..|.|.+|+..
T Consensus 682 ~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 682 DVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred ceEEEEecccEEEEEecc
Confidence 466777789999999976
No 129
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.95 E-value=2.8e-26 Score=192.59 Aligned_cols=298 Identities=14% Similarity=0.144 Sum_probs=209.7
Q ss_pred eEEEeCC---CCcEEEEEecCCeEEEEEecCCceE----EEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCC
Q 016982 14 TCHAWSP---DHAMVAFCPNNNEVHIYKLIQEKWE----KLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGS 86 (379)
Q Consensus 14 ~~~~~s~---~~~~l~~~~~dg~i~i~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~ 86 (379)
.++.|++ ....||.+.++|.|.++|.....++ .+.....|.+.|..+.|.|....|++++.|.++++||+++.
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence 3467765 3357899999999999998765433 23556789999999999996678999999999999999999
Q ss_pred ceeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCeEEEEEeecCCce---------------------eEEEEEe--ec
Q 016982 87 EWVPTLVILRLNRAALCVQWSP-KENKFAVGSGAKTVCICYYEQENNW---------------------WVSKLIR--KR 142 (379)
Q Consensus 87 ~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~---------------------~~~~~~~--~~ 142 (379)
++...-...+|.+.|.+++|.| +...|++|+.||.+.|||++..... ...+... ..
T Consensus 133 ~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA 212 (720)
T KOG0321|consen 133 RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA 212 (720)
T ss_pred eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence 8777755689999999999999 4568899999999999999754300 0000000 22
Q ss_pred CCcCEEE---EEEcCCCcEEEEeeC-CCeEEEEeccccccccccccCCCccCCcccceEEEeecC---CcceEEEEECCC
Q 016982 143 HDSSVTS---VAWHPNNVFLATTST-DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS---FSWAFGVKWSPS 215 (379)
Q Consensus 143 ~~~~v~~---~~~~p~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~sp~ 215 (379)
+...|.. +.+..|...||+++. |+.|+|||++...-..+..+.. +..+..| ...+.++.....
T Consensus 213 ~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~----------~~~~~t~skrs~G~~nL~lDss 282 (720)
T KOG0321|consen 213 ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRG----------SDKYPTHSKRSVGQVNLILDSS 282 (720)
T ss_pred ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCc----------ccCccCcccceeeeEEEEecCC
Confidence 3333444 445567888998887 9999999985332222222111 1111222 335788888888
Q ss_pred CCEEEEEcCCCeEEEEECCCCCc-eeeeeeeecCC--eeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccc
Q 016982 216 GNTLAYVGHNSMIYFVDDVGPSP-LAQNVAFRDLP--LRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERK 291 (379)
Q Consensus 216 ~~~l~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~--i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~ 291 (379)
|.+|++.+.|+.|++|++..... .+..+.++... -..-..+||+.+++ ++.|...++|..+... .
T Consensus 283 Gt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e--~--------- 351 (720)
T KOG0321|consen 283 GTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE--A--------- 351 (720)
T ss_pred CCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc--C---------
Confidence 99999888999999999887532 22223222111 11234578999888 6788899998765421 1
Q ss_pred cCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCC
Q 016982 292 TSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLES 370 (379)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~ 370 (379)
....+.||..+|++++|.+.+- .-++||++|-++++|++.+
T Consensus 352 ----------------------------------~~~~l~Ght~eVt~V~w~pS~~----t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 352 ----------------------------------PPALLLGHTREVTTVRWLPSAT----TPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred ----------------------------------ChhhhhCcceEEEEEeeccccC----CCceeeccCcceEEEeccC
Confidence 1114579999999999654443 4578889999999999975
No 130
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=1.5e-28 Score=208.85 Aligned_cols=238 Identities=14% Similarity=0.182 Sum_probs=209.5
Q ss_pred eccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCC
Q 016982 7 HQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGS 86 (379)
Q Consensus 7 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~ 86 (379)
.-|...|.++..-..++.+++|+.|..+.+|.+..- ..+..+.+|..+|.++.|+++..+|++|+.+|+|++||++..
T Consensus 25 ~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp--~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA 102 (825)
T KOG0267|consen 25 VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP--NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA 102 (825)
T ss_pred hhhhhhhceeeeeccceeeccCCCceeeccccccCC--chhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhh
Confidence 446788888888778899999999999999988764 566678999999999999999999999999999999999998
Q ss_pred ceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCC
Q 016982 87 EWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDG 166 (379)
Q Consensus 87 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~ 166 (379)
+.++.+ .+|...+.++.|+|-+.+.+.|+.|..+++||.+... +...+ .+|...+..+.|+|+|++++.+++|.
T Consensus 103 k~vrtL--tgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G---c~~~~-~s~~~vv~~l~lsP~Gr~v~~g~ed~ 176 (825)
T KOG0267|consen 103 KIVRTL--TGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG---CSHTY-KSHTRVVDVLRLSPDGRWVASGGEDN 176 (825)
T ss_pred hhhhhh--hccccCcceeeeccceEEeccccccccceehhhhccC---ceeee-cCCcceeEEEeecCCCceeeccCCcc
Confidence 866655 7899999999999999999999999999999999766 45666 77999999999999999999999999
Q ss_pred eEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeee
Q 016982 167 KCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFR 246 (379)
Q Consensus 167 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 246 (379)
.++|||. ..++.+..|..|.+.+..+.|+|..-+++.|+.|+++++||+++.. ++......
T Consensus 177 tvki~d~------------------~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe-~I~s~~~~ 237 (825)
T KOG0267|consen 177 TVKIWDL------------------TAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFE-VISSGKPE 237 (825)
T ss_pred eeeeecc------------------cccccccccccccccccccccCchhhhhccCCCCceeeeeccceeE-EeeccCCc
Confidence 9999996 6788899999999999999999999999999999999999998754 33444445
Q ss_pred cCCeeeEEEecCCcEEEEEeCCCeE
Q 016982 247 DLPLRDVLFVSEKMVIGVGFDCNPM 271 (379)
Q Consensus 247 ~~~i~~~~~s~~~~~l~~~~d~~~~ 271 (379)
...|.+..|+|+++.+.+|....+.
T Consensus 238 ~~~v~~~~fn~~~~~~~~G~q~sl~ 262 (825)
T KOG0267|consen 238 TDGVRSLAFNPDGKIVLSGEQISLS 262 (825)
T ss_pred cCCceeeeecCCceeeecCchhhhh
Confidence 6789999999999998887666555
No 131
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.3e-26 Score=177.84 Aligned_cols=264 Identities=13% Similarity=0.100 Sum_probs=214.9
Q ss_pred EEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEE
Q 016982 35 HIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFA 114 (379)
Q Consensus 35 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 114 (379)
..|...+-.+..++.+.+|.+.|..++.......+.+++.|.+-+||.++++.+...+ .+|.+.|.++.|++.+.+++
T Consensus 129 ssFk~~t~~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y--~GH~GSVNsikfh~s~~L~l 206 (481)
T KOG0300|consen 129 SSFKDGTVKFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATY--TGHTGSVNSIKFHNSGLLLL 206 (481)
T ss_pred eeecCCceeEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeee--cccccceeeEEeccccceEE
Confidence 3343333335677889999999999998777778999999999999999999976665 78999999999999999999
Q ss_pred EEeCCCeEEEEEee----cCCc---------------------------------eeEEEEEeecCCcCEEEEEEcCCCc
Q 016982 115 VGSGAKTVCICYYE----QENN---------------------------------WWVSKLIRKRHDSSVTSVAWHPNNV 157 (379)
Q Consensus 115 ~~~~d~~v~i~~~~----~~~~---------------------------------~~~~~~~~~~~~~~v~~~~~~p~~~ 157 (379)
+++.|++-.||... ..++ ....-.+ .+|.+.|.+..|...++
T Consensus 207 TaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~l-tgH~~vV~a~dWL~gg~ 285 (481)
T KOG0300|consen 207 TASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRL-TGHRAVVSACDWLAGGQ 285 (481)
T ss_pred EccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeee-eccccceEehhhhcCcc
Confidence 99999999998621 1000 0011122 68999999999999999
Q ss_pred EEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCC
Q 016982 158 FLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPS 237 (379)
Q Consensus 158 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~ 237 (379)
.+++++.|.+..+||+ ++++.+..+.+|....+.++-+|..+++++++.|-+.++||++..-
T Consensus 286 Q~vTaSWDRTAnlwDV------------------Etge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI 347 (481)
T KOG0300|consen 286 QMVTASWDRTANLWDV------------------ETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAI 347 (481)
T ss_pred eeeeeeccccceeeee------------------ccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhc
Confidence 9999999999999997 8899999999999999999999999999999999999999999776
Q ss_pred ceeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeecccccc
Q 016982 238 PLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYG 317 (379)
Q Consensus 238 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (379)
+-+..+++|...|+++.|..+.+.+.++.|.++++|++.+-.. .+. .+
T Consensus 348 ~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRs--plA-----------------------TI------- 395 (481)
T KOG0300|consen 348 QSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRS--PLA-----------------------TI------- 395 (481)
T ss_pred ceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccC--cce-----------------------ee-------
Confidence 6778899999999999999999999999999999999765331 000 00
Q ss_pred CcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCC
Q 016982 318 VGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLES 370 (379)
Q Consensus 318 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~ 370 (379)
--..+++.++ .+..+ +.||---++..||++|++-
T Consensus 396 --------------RtdS~~NRva-vs~g~----~iIAiPhDNRqvRlfDlnG 429 (481)
T KOG0300|consen 396 --------------RTDSPANRVA-VSKGH----PIIAIPHDNRQVRLFDLNG 429 (481)
T ss_pred --------------ecCCccceeE-eecCC----ceEEeccCCceEEEEecCC
Confidence 1234567777 44333 5777778888999999854
No 132
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=6.3e-25 Score=189.87 Aligned_cols=287 Identities=14% Similarity=0.150 Sum_probs=220.1
Q ss_pred ecc-CcceeEEEeCCCCc-EEEEEecCCeEEEEEecCCceEEEEEec-cCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982 7 HQF-AQCITCHAWSPDHA-MVAFCPNNNEVHIYKLIQEKWEKLHVLQ-KHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ 83 (379)
Q Consensus 7 ~~~-~~~i~~~~~s~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~ 83 (379)
+.| .+.|+.++|..||+ .+|+|+..|.+.+||++.. +....+. .|.+.|....|.|....+++++.|+.+++|=.
T Consensus 240 Fk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~k--kl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vf 317 (910)
T KOG1539|consen 240 FKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKK--KLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVF 317 (910)
T ss_pred EEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCC--eeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEe
Confidence 445 49999999999996 5577777899999999987 4544444 78899999999999999999999999998866
Q ss_pred cCCceeeeE--EeecCCCceeEEEEC-CCCCEEEEEeCCCeEEEEEee--------------------------------
Q 016982 84 EGSEWVPTL--VILRLNRAALCVQWS-PKENKFAVGSGAKTVCICYYE-------------------------------- 128 (379)
Q Consensus 84 ~~~~~~~~~--~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~v~i~~~~-------------------------------- 128 (379)
+++.-.+.+ .-.+|..+..++.|. .+|..+.+++.|++++.+++.
T Consensus 318 D~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~ 397 (910)
T KOG1539|consen 318 DSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPP 397 (910)
T ss_pred eCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCc
Confidence 644322211 225688888888887 477778888777766554432
Q ss_pred ---------------------------------cCCceeEEEEEeec------CCcCEEEEEEcCCCcEEEEeeCCCeEE
Q 016982 129 ---------------------------------QENNWWVSKLIRKR------HDSSVTSVAWHPNNVFLATTSTDGKCR 169 (379)
Q Consensus 129 ---------------------------------~~~~~~~~~~~~~~------~~~~v~~~~~~p~~~~l~~~~~d~~i~ 169 (379)
... ..+.. .. ....+++++.++.|++.+.|+..|.|-
T Consensus 398 i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~---~G~~~-L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id 473 (910)
T KOG1539|consen 398 IVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKT---SGRHV-LDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTID 473 (910)
T ss_pred ceeeecccchhhhhcceeEEecCcceEEEEeccCcc---cccEE-ecCccccccCcceEEEEEeccCceEEEeccCCeEE
Confidence 111 00111 11 225688999999999999999999999
Q ss_pred EEeccccccccccccCCCccCCcccceEEEe---ecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCC---------
Q 016982 170 VFSTFIKGVDIKEKKEGTSSDTKFGEQILQL---DLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPS--------- 237 (379)
Q Consensus 170 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~--------- 237 (379)
+|++ +++-...++ ..|.++|++++...-++.+++++.+|.+++||..+..
T Consensus 474 ~fNm------------------QSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~ 535 (910)
T KOG1539|consen 474 RFNM------------------QSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGS 535 (910)
T ss_pred EEEc------------------ccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCC
Confidence 9997 666666666 5889999999999999999999999999999976532
Q ss_pred -------------------------------ceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEE
Q 016982 238 -------------------------------PLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIK 285 (379)
Q Consensus 238 -------------------------------~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~ 285 (379)
.+++.+.+|...|++++|||||++|+ ++.|++|++|+.....+.+...
T Consensus 536 ~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~ 615 (910)
T KOG1539|consen 536 SITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL 615 (910)
T ss_pred CcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe
Confidence 12234557889999999999999988 7789999999988776555422
Q ss_pred EecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecC-ceEE
Q 016982 286 FLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLD-GKIV 364 (379)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~D-g~v~ 364 (379)
-..+.+.+. ++|.+ .+|||...| .-|+
T Consensus 616 -----------------------------------------------vd~~~~sls-~SPng----D~LAT~Hvd~~gIy 643 (910)
T KOG1539|consen 616 -----------------------------------------------VDSPCTSLS-FSPNG----DFLATVHVDQNGIY 643 (910)
T ss_pred -----------------------------------------------cCCcceeeE-ECCCC----CEEEEEEecCceEE
Confidence 345677888 77665 999999999 6799
Q ss_pred EEeCC
Q 016982 365 TWDLE 369 (379)
Q Consensus 365 iW~~~ 369 (379)
+|-=.
T Consensus 644 lWsNk 648 (910)
T KOG1539|consen 644 LWSNK 648 (910)
T ss_pred EEEch
Confidence 99643
No 133
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=4.3e-25 Score=192.87 Aligned_cols=244 Identities=19% Similarity=0.268 Sum_probs=194.1
Q ss_pred eccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCC
Q 016982 7 HQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGS 86 (379)
Q Consensus 7 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~ 86 (379)
+.|....+.++|.|+|++|++++.||.|++|+..... +...++..+...|.+++-. +++|++++.+++|.+|.+..+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~-e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE-EEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcc-cCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCC
Confidence 4688899999999999999999999999999976542 2223333367778887765 558999999999999999888
Q ss_pred ceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCC
Q 016982 87 EWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDG 166 (379)
Q Consensus 87 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~ 166 (379)
+....+ ....-++.+++|+-+|+++|.|+.|-.|++.++.... ..+.+ .+|.++|.++.|+|.+++||+.+-||
T Consensus 87 ~~~~iL--~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s---~~~~l-rgh~apVl~l~~~p~~~fLAvss~dG 160 (933)
T KOG1274|consen 87 EEDTIL--ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS---QEKVL-RGHDAPVLQLSYDPKGNFLAVSSCDG 160 (933)
T ss_pred Ccccee--eeeeccceEEEEecCCcEEEeecCceeEEEEeccccc---hheee-cccCCceeeeeEcCCCCEEEEEecCc
Confidence 643333 4567899999999999999999999999998887776 35566 89999999999999999999999999
Q ss_pred eEEEEeccccccccccccCCCccCCcccceEEEeec-------C-CcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCc
Q 016982 167 KCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDL-------S-FSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSP 238 (379)
Q Consensus 167 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~ 238 (379)
.|++||+ ..+.+..++.+ . ...+..++|+|+|..|+..+.|+.|++|+..+...
T Consensus 161 ~v~iw~~------------------~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~ 222 (933)
T KOG1274|consen 161 KVQIWDL------------------QDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWEL 222 (933)
T ss_pred eEEEEEc------------------ccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCcee
Confidence 9999998 33333333221 1 34567899999988888888999999999877654
Q ss_pred eeeeee-eecCCeeeEEEecCCcEEE-EEeCCCeEEEEecC
Q 016982 239 LAQNVA-FRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADE 277 (379)
Q Consensus 239 ~~~~~~-~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~ 277 (379)
...... .+...+..+.|+|+|+||| ++.++.|.||+.+.
T Consensus 223 ~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 223 QFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred heeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 322222 2234488999999999999 55799999999663
No 134
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=4.4e-24 Score=180.63 Aligned_cols=209 Identities=14% Similarity=0.163 Sum_probs=170.8
Q ss_pred cceecc-CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 016982 4 IAVHQF-AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWN 82 (379)
Q Consensus 4 ~~~~~~-~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~ 82 (379)
+.++++ ...|.+++|++ +.+|++.+.+|.|.-||+.+. +....+....+.|.+++.+|.+..++.|+.||.+..++
T Consensus 62 ~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~l--k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s 138 (691)
T KOG2048|consen 62 PVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTL--KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFS 138 (691)
T ss_pred EEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccC--ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEe
Confidence 456666 56899999995 556777778899999999997 67778888889999999999999999999999888888
Q ss_pred ccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEE-E---eecCCcCEEEEEEcCCCcE
Q 016982 83 QEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKL-I---RKRHDSSVTSVAWHPNNVF 158 (379)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~-~---~~~~~~~v~~~~~~p~~~~ 158 (379)
...+.......+...++++.+++|+|++..++.|+.||.|++||...+........ + ......-|+++.|-.+ ..
T Consensus 139 ~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~t 217 (691)
T KOG2048|consen 139 IGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-ST 217 (691)
T ss_pred cCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-Cc
Confidence 88887665555566779999999999999999999999999999998874221111 1 0112334677777754 46
Q ss_pred EEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECC
Q 016982 159 LATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDV 234 (379)
Q Consensus 159 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~ 234 (379)
|++|...|+|.+||. ..+..++.+..|...|.+++.++++.++++++.|+.|.-|...
T Consensus 218 I~sgDS~G~V~FWd~------------------~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~ 275 (691)
T KOG2048|consen 218 IASGDSAGTVTFWDS------------------IFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLT 275 (691)
T ss_pred EEEecCCceEEEEcc------------------cCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEec
Confidence 999999999999995 7788889999999999999999999999999998887777543
No 135
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=6.7e-27 Score=183.54 Aligned_cols=246 Identities=16% Similarity=0.186 Sum_probs=195.1
Q ss_pred EEEEeccCCCceEEEEEcCCC-CEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEE
Q 016982 46 KLHVLQKHDQIVSGIDWSVRS-NRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCI 124 (379)
Q Consensus 46 ~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i 124 (379)
.+..|.+|.+.|.+++=+|.. ..+++|+.||.|++||+.+.++...+ ..|.+.|..+++.. ..+++++.|++|+.
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f--~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~ 133 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTF--KAHEGLVRGICVTQ--TSFFTVGDDKTVKQ 133 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhee--ecccCceeeEEecc--cceEEecCCcceee
Confidence 455678999999999999987 78999999999999999998866666 78999999999986 67889999999999
Q ss_pred EEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCC
Q 016982 125 CYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSF 204 (379)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (379)
|-++... .+.+ .....+..+.-+..+..++|++.+ |.|||. .-..++.++....
T Consensus 134 wk~~~~p----~~ti--lg~s~~~gIdh~~~~~~FaTcGe~--i~IWD~------------------~R~~Pv~smswG~ 187 (433)
T KOG0268|consen 134 WKIDGPP----LHTI--LGKSVYLGIDHHRKNSVFATCGEQ--IDIWDE------------------QRDNPVSSMSWGA 187 (433)
T ss_pred eeccCCc----ceee--eccccccccccccccccccccCce--eeeccc------------------ccCCccceeecCC
Confidence 9988752 4443 345667778777778889998765 899996 4556778887777
Q ss_pred cceEEEEECCC-CCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCc-EEEEEeCCCeEEEEecCCCcEE
Q 016982 205 SWAFGVKWSPS-GNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKM-VIGVGFDCNPMVFAADETGIWT 282 (379)
Q Consensus 205 ~~v~~~~~sp~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~d~~~~i~~~~~~~~~~ 282 (379)
..|.++.|+|. ...|++++.|+.|.+||+++..++.+... ...-+.++|+|.+- ++++..|.+++.|+...-. .
T Consensus 188 Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~--~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~--~ 263 (433)
T KOG0268|consen 188 DSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL--TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS--R 263 (433)
T ss_pred CceeEEecCCCcchheeeeccCCceEEEecccCCccceeee--eccccceecCccccceeeccccccceehhhhhhc--c
Confidence 88999999995 45677888999999999999887644443 44567899999654 4457778888887754311 0
Q ss_pred EEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCce
Q 016982 283 FIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGK 362 (379)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~ 362 (379)
.+. ...+|...|.+|+ |+|.| +-|+|||.|.+
T Consensus 264 -----------------------p~~--------------------v~~dhvsAV~dVd-fsptG----~EfvsgsyDks 295 (433)
T KOG0268|consen 264 -----------------------PLN--------------------VHKDHVSAVMDVD-FSPTG----QEFVSGSYDKS 295 (433)
T ss_pred -----------------------cch--------------------hhcccceeEEEec-cCCCc----chhccccccce
Confidence 011 3368999999999 87665 99999999999
Q ss_pred EEEEeCCCccc
Q 016982 363 IVTWDLESQED 373 (379)
Q Consensus 363 v~iW~~~~~~~ 373 (379)
|||+..+.+..
T Consensus 296 IRIf~~~~~~S 306 (433)
T KOG0268|consen 296 IRIFPVNHGHS 306 (433)
T ss_pred EEEeecCCCcc
Confidence 99999987644
No 136
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.95 E-value=2.1e-25 Score=176.12 Aligned_cols=245 Identities=18% Similarity=0.277 Sum_probs=188.2
Q ss_pred eccCcceeEEEeCCCC--cEEEEEecCCeEEEEEecC--------------CceEEEEEeccCCCceEEEEEcCCC-CEE
Q 016982 7 HQFAQCITCHAWSPDH--AMVAFCPNNNEVHIYKLIQ--------------EKWEKLHVLQKHDQIVSGIDWSVRS-NRI 69 (379)
Q Consensus 7 ~~~~~~i~~~~~s~~~--~~l~~~~~dg~i~i~~~~~--------------~~~~~~~~~~~~~~~v~~~~~~~~~-~~l 69 (379)
..|.+.+..+.-++-+ .+.|+-+..|.|+||++.. .+.+++.++.+|...=++|.|||-. ..|
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 4566777777777654 4566667899999999852 2356788999999988999999943 357
Q ss_pred EEEeCCCeEEEEeccCCceeee-EEeecCCCceeEEEECCC-CCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCE
Q 016982 70 VTVSHDRNSYVWNQEGSEWVPT-LVILRLNRAALCVQWSPK-ENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSV 147 (379)
Q Consensus 70 ~~~~~d~~i~vw~~~~~~~~~~-~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v 147 (379)
++|..-+.|++|...++.+..- ..+.+|+..|..++|+|. ...|++|+-||+|+|||++.+....+ .+.+.|.+.|
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~--~~~kAh~sDV 305 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAA--VSTKAHNSDV 305 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccce--eEeeccCCce
Confidence 8888888999999988865432 223569999999999995 56899999999999999998853222 2227899999
Q ss_pred EEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCC-CCEEEEEcCCC
Q 016982 148 TSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPS-GNTLAYVGHNS 226 (379)
Q Consensus 148 ~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~ 226 (379)
+.+.|+..-.+|++|+.||+++|||++. .+.++++..|..|..+|+++.|+|. ...|++++.|.
T Consensus 306 NVISWnr~~~lLasG~DdGt~~iwDLR~---------------~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~ 370 (440)
T KOG0302|consen 306 NVISWNRREPLLASGGDDGTLSIWDLRQ---------------FKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDN 370 (440)
T ss_pred eeEEccCCcceeeecCCCceEEEEEhhh---------------ccCCCcceeEEeccCCeeEEEeccccCceEEeccCCC
Confidence 9999998888999999999999999731 2456889999999999999999994 56788888999
Q ss_pred eEEEEECCCCCc---------------eeeeeeee--cCCeeeEEEecC--CcEEEEEeCC
Q 016982 227 MIYFVDDVGPSP---------------LAQNVAFR--DLPLRDVLFVSE--KMVIGVGFDC 268 (379)
Q Consensus 227 ~i~v~d~~~~~~---------------~~~~~~~~--~~~i~~~~~s~~--~~~l~~~~d~ 268 (379)
+|.+||+.-... ..+.+-.| ...+..+.|++. |.++.++.||
T Consensus 371 QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG 431 (440)
T KOG0302|consen 371 QITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG 431 (440)
T ss_pred cEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence 999999753211 01122234 345788999985 4455566665
No 137
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.95 E-value=1.2e-24 Score=173.36 Aligned_cols=312 Identities=18% Similarity=0.262 Sum_probs=219.3
Q ss_pred eecc-CcceeEEEeCCCCc-EEEEEecCCeEEEEEecCC-------ceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCC
Q 016982 6 VHQF-AQCITCHAWSPDHA-MVAFCPNNNEVHIYKLIQE-------KWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDR 76 (379)
Q Consensus 6 ~~~~-~~~i~~~~~s~~~~-~l~~~~~dg~i~i~~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 76 (379)
+.-| ..+|..+.|.++.. +||+|+.|..|+||.+..+ +.+.+..|..|...|+++.|+|+|+.|++|+.+|
T Consensus 8 i~wH~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g 87 (434)
T KOG1009|consen 8 ISWHDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGG 87 (434)
T ss_pred EEecCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCc
Confidence 3344 57999999998776 9999999999999998643 3566778899999999999999999999999999
Q ss_pred eEEEEecc--------C------CceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeec
Q 016982 77 NSYVWNQE--------G------SEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKR 142 (379)
Q Consensus 77 ~i~vw~~~--------~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~ 142 (379)
.+.+|... + ..++.......|...+..++|+|+++++++++.|..+++||+..+. +...+ ..
T Consensus 88 ~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~---l~~~~-~d 163 (434)
T KOG1009|consen 88 EVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQ---LLAIL-DD 163 (434)
T ss_pred eEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccce---eEeec-cc
Confidence 99999866 2 2344455566789999999999999999999999999999999998 55566 89
Q ss_pred CCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccc--cCCCccC-CcccceEEEeec--CCcceEEEEECCCCC
Q 016982 143 HDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEK--KEGTSSD-TKFGEQILQLDL--SFSWAFGVKWSPSGN 217 (379)
Q Consensus 143 ~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~--~~~~v~~~~~sp~~~ 217 (379)
|...+..++|.|-++++++-+.|...+.+.+...+...+.. ..+.... ...+...+.+.. -..-...++|+|+|.
T Consensus 164 h~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~ 243 (434)
T KOG1009|consen 164 HEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGS 243 (434)
T ss_pred cccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCc
Confidence 99999999999999999999999877777664322221111 0000000 011122222211 122357789999999
Q ss_pred EEEEEcC----C-----CeEEEEECCCCCceeeeeeeecCCeeeEEEec------------------CCcEEEEEeCCCe
Q 016982 218 TLAYVGH----N-----SMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVS------------------EKMVIGVGFDCNP 270 (379)
Q Consensus 218 ~l~~~~~----d-----~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~------------------~~~~l~~~~d~~~ 270 (379)
+|++.+. . +..++|+-..-++....+.....+...+.|+| -+..+|.+..+.+
T Consensus 244 llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~sv 323 (434)
T KOG1009|consen 244 LLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSV 323 (434)
T ss_pred EEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceE
Confidence 9988642 2 23456654433334445555555555666654 1223445666677
Q ss_pred EEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcc
Q 016982 271 MVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSR 350 (379)
Q Consensus 271 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 350 (379)
++|+.....-.-+.. .-|-..|+.++ |+++|
T Consensus 324 yvydtq~~~P~~~v~---------------------------------------------nihy~~iTDia-ws~dg--- 354 (434)
T KOG1009|consen 324 YVYDTQTLEPLAVVD---------------------------------------------NIHYSAITDIA-WSDDG--- 354 (434)
T ss_pred EEeccccccceEEEe---------------------------------------------eeeeeeeccee-ecCCC---
Confidence 777654332222211 34888999999 77666
Q ss_pred cceEEEeecCceEEEEeCCCc
Q 016982 351 ITRFTTSGLDGKIVTWDLESQ 371 (379)
Q Consensus 351 ~~~l~t~~~Dg~v~iW~~~~~ 371 (379)
.+|+-.|.||...+=-++..
T Consensus 355 -~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 355 -SVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred -cEEEEeccCCceEEEEEcch
Confidence 89999999998777665543
No 138
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=3.2e-23 Score=169.80 Aligned_cols=285 Identities=12% Similarity=0.166 Sum_probs=214.7
Q ss_pred eccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCce-EEEEEeccCC-CceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982 7 HQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKW-EKLHVLQKHD-QIVSGIDWSVRSNRIVTVSHDRNSYVWNQE 84 (379)
Q Consensus 7 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~-~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~ 84 (379)
...++.|..+.|+|.+..|+.....+.+..|+.+++.+ +....++.++ ..|.|+.|.++|+ +++|..+|.|.||+..
T Consensus 197 k~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~ 275 (626)
T KOG2106|consen 197 KTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKG 275 (626)
T ss_pred eeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCC
Confidence 34467788999999665554444568999999988743 2333444443 5799999999985 6799999999999997
Q ss_pred CCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCce-----------------------------eE
Q 016982 85 GSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNW-----------------------------WV 135 (379)
Q Consensus 85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~-----------------------------~~ 135 (379)
+.+..... ..|.+.|.+++.-.+|.++- |+.|+.|..||-+-.+.. -+
T Consensus 276 ~~~~~k~~--~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL 352 (626)
T KOG2106|consen 276 TNRISKQV--HAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFIL 352 (626)
T ss_pred CceEEeEe--eecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEE
Confidence 77654444 48999999999999997655 999999999984322100 00
Q ss_pred E-------EEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceE
Q 016982 136 S-------KLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAF 208 (379)
Q Consensus 136 ~-------~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 208 (379)
. .....+|......++.+|+.+++++++.|+.+++|+- .+++-+.. -..+..
T Consensus 353 ~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~--------------------~k~~wt~~-~~d~~~ 411 (626)
T KOG2106|consen 353 QGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWND--------------------HKLEWTKI-IEDPAE 411 (626)
T ss_pred EeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccC--------------------CceeEEEE-ecCcee
Confidence 0 0111467778889999999999999999999999962 22222222 145688
Q ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEe
Q 016982 209 GVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFL 287 (379)
Q Consensus 209 ~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~ 287 (379)
++.|+|.| .++.|...|...+.|..+. .++..-. .+.+++.+.|+|+|.+|| ++.|+.+++|..+.++ ..+.+.
T Consensus 412 ~~~fhpsg-~va~Gt~~G~w~V~d~e~~-~lv~~~~-d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g-~~y~r~- 486 (626)
T KOG2106|consen 412 CADFHPSG-VVAVGTATGRWFVLDTETQ-DLVTIHT-DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANG-RKYSRV- 486 (626)
T ss_pred EeeccCcc-eEEEeeccceEEEEecccc-eeEEEEe-cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCC-cEEEEe-
Confidence 99999999 8999999999999998883 3434333 388999999999999999 7789999999988766 222110
Q ss_pred cccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEe
Q 016982 288 DERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWD 367 (379)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~ 367 (379)
-..|..+|+.+. |+.|+ ++|.+-+-|-.|.+|.
T Consensus 487 ------------------------------------------~k~~gs~ithLD-wS~Ds----~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 487 ------------------------------------------GKCSGSPITHLD-WSSDS----QFLVSNSGDYEILYWK 519 (626)
T ss_pred ------------------------------------------eeecCceeEEee-ecCCC----ceEEeccCceEEEEEc
Confidence 023448999999 87776 9999999999999994
Q ss_pred C
Q 016982 368 L 368 (379)
Q Consensus 368 ~ 368 (379)
.
T Consensus 520 ~ 520 (626)
T KOG2106|consen 520 P 520 (626)
T ss_pred c
Confidence 3
No 139
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=6.4e-26 Score=185.49 Aligned_cols=239 Identities=16% Similarity=0.174 Sum_probs=201.5
Q ss_pred ccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCc
Q 016982 8 QFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSE 87 (379)
Q Consensus 8 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~ 87 (379)
.-..-|.++.+.|||+.|++|++-.++.|||+..........+......+.+++.+||.+..+++..||.|.|||+.+..
T Consensus 463 ~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~ 542 (705)
T KOG0639|consen 463 NRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT 542 (705)
T ss_pred CcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce
Confidence 34567899999999999999999999999999876545555555555678899999999999999999999999999998
Q ss_pred eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCe
Q 016982 88 WVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGK 167 (379)
Q Consensus 88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~ 167 (379)
.++.+ .+|...+.||.++++|..|.+|+-|++|+-||++++.. .........|.++..+|++.+++.|-.++.
T Consensus 543 ~Vrqf--qGhtDGascIdis~dGtklWTGGlDntvRcWDlregrq-----lqqhdF~SQIfSLg~cP~~dWlavGMens~ 615 (705)
T KOG0639|consen 543 LVRQF--QGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQ-----LQQHDFSSQIFSLGYCPTGDWLAVGMENSN 615 (705)
T ss_pred eeecc--cCCCCCceeEEecCCCceeecCCCccceeehhhhhhhh-----hhhhhhhhhheecccCCCccceeeecccCc
Confidence 77766 88999999999999999999999999999999998762 221345678999999999999999999999
Q ss_pred EEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeec
Q 016982 168 CRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRD 247 (379)
Q Consensus 168 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 247 (379)
+.|... ++...+.+..|...|.++.|++.|+++++.+.|+.+..|.+.-+..+.+ .+ ..
T Consensus 616 vevlh~-------------------skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFq-sk-E~ 674 (705)
T KOG0639|consen 616 VEVLHT-------------------SKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-SK-ES 674 (705)
T ss_pred EEEEec-------------------CCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceee-cc-cc
Confidence 988864 4555667778899999999999999999999999999998777665433 22 36
Q ss_pred CCeeeEEEecCCcEEEEEe-CCCeEEEE
Q 016982 248 LPLRDVLFVSEKMVIGVGF-DCNPMVFA 274 (379)
Q Consensus 248 ~~i~~~~~s~~~~~l~~~~-d~~~~i~~ 274 (379)
.+|.++..|.|.++|++|+ |....+|.
T Consensus 675 SsVlsCDIS~ddkyIVTGSGdkkATVYe 702 (705)
T KOG0639|consen 675 SSVLSCDISFDDKYIVTGSGDKKATVYE 702 (705)
T ss_pred CcceeeeeccCceEEEecCCCcceEEEE
Confidence 7899999999999999654 44666664
No 140
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.94 E-value=1.3e-24 Score=175.72 Aligned_cols=254 Identities=19% Similarity=0.197 Sum_probs=190.7
Q ss_pred eccCcceeEEEeCCCC--cEEEEEecCCeEEEEEecCC--ceEEEEEeccCCCceEEEEEcCCC-CEEEEEeCCCeEEEE
Q 016982 7 HQFAQCITCHAWSPDH--AMVAFCPNNNEVHIYKLIQE--KWEKLHVLQKHDQIVSGIDWSVRS-NRIVTVSHDRNSYVW 81 (379)
Q Consensus 7 ~~~~~~i~~~~~s~~~--~~l~~~~~dg~i~i~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~vw 81 (379)
.-+...|++++|+|.. +++|+|...|.|-+||+.+. ....+..+..|..+|.++.|+|.. ..+++.+.||+|++-
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~ 262 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQ 262 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeee
Confidence 4467899999999954 57889989999999999522 235567788899999999999976 688999999999999
Q ss_pred eccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCC-cEEE
Q 016982 82 NQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNN-VFLA 160 (379)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~ 160 (379)
|+++......+...........+.|+.+...++.+..=|...+||.+++... ...+ .-|...|..++++|.. .+|+
T Consensus 263 D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~--~~~~-~lh~kKI~sv~~NP~~p~~la 339 (498)
T KOG4328|consen 263 DFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE--YENL-RLHKKKITSVALNPVCPWFLA 339 (498)
T ss_pred eecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCcc--chhh-hhhhcccceeecCCCCchhee
Confidence 9998865445443334566788889888777888877779999999988731 2333 5688899999999965 7889
Q ss_pred EeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECC---CCC
Q 016982 161 TTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDV---GPS 237 (379)
Q Consensus 161 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~---~~~ 237 (379)
+++.|++++|||++. ++ ....++.....|...|.+..|||++..|++.+.|..|+|||.. ..-
T Consensus 340 T~s~D~T~kIWD~R~----l~----------~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~ 405 (498)
T KOG4328|consen 340 TASLDQTAKIWDLRQ----LR----------GKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKD 405 (498)
T ss_pred ecccCcceeeeehhh----hc----------CCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccC
Confidence 999999999999731 11 0111234445688899999999988779999999999999973 222
Q ss_pred ceeeeeeeecC------CeeeEEEecCCcEEEEE-eCCCeEEEEecCC
Q 016982 238 PLAQNVAFRDL------PLRDVLFVSEKMVIGVG-FDCNPMVFAADET 278 (379)
Q Consensus 238 ~~~~~~~~~~~------~i~~~~~s~~~~~l~~~-~d~~~~i~~~~~~ 278 (379)
+...++. |+. ......|.|+..+++.+ .-..|-+|+.+..
T Consensus 406 ~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~ 452 (498)
T KOG4328|consen 406 EPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG 452 (498)
T ss_pred Cccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCC
Confidence 2223333 321 24567899998888854 5556767665443
No 141
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.4e-24 Score=188.23 Aligned_cols=245 Identities=16% Similarity=0.185 Sum_probs=194.8
Q ss_pred ccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecC
Q 016982 51 QKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQE 130 (379)
Q Consensus 51 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~ 130 (379)
..|....+.++|.|+|++|++++.||.|++|+.....-.+... ..+...|.+++.. ++.|++++.+++|.+|.+..+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti-~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETI-DISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchh-hccCceeEEEeec--ccceEEeeccceEEEeeCCCC
Confidence 3578888999999999999999999999999987763223221 2256677776654 669999999999999999888
Q ss_pred CceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEE
Q 016982 131 NNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGV 210 (379)
Q Consensus 131 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 210 (379)
.. ...+ ....-++.+++|+-+|+++|.|+.|-.|++.++ ........+.+|.++|.++
T Consensus 87 ~~---~~iL-~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~------------------~D~s~~~~lrgh~apVl~l 144 (933)
T KOG1274|consen 87 EE---DTIL-ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNL------------------DDSSQEKVLRGHDAPVLQL 144 (933)
T ss_pred Cc---ccee-eeeeccceEEEEecCCcEEEeecCceeEEEEec------------------cccchheeecccCCceeee
Confidence 73 2233 455678999999999999999999999999996 5667778899999999999
Q ss_pred EECCCCCEEEEEcCCCeEEEEECCCCCceeeeeee-------e-cCCeeeEEEecC-CcEEEEEeCCCeEEEEecCCCcE
Q 016982 211 KWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAF-------R-DLPLRDVLFVSE-KMVIGVGFDCNPMVFAADETGIW 281 (379)
Q Consensus 211 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-------~-~~~i~~~~~s~~-~~~l~~~~d~~~~i~~~~~~~~~ 281 (379)
.|+|++++||+.+.||.|++||+.++.. ..++.+ . ...+..++|+|+ |++++.+.|+.|.+|...+ |
T Consensus 145 ~~~p~~~fLAvss~dG~v~iw~~~~~~~-~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~---w 220 (933)
T KOG1274|consen 145 SYDPKGNFLAVSSCDGKVQIWDLQDGIL-SKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKG---W 220 (933)
T ss_pred eEcCCCCEEEEEecCceEEEEEcccchh-hhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCC---c
Confidence 9999999999999999999999987642 233221 1 334678999998 6777799999999998664 6
Q ss_pred EEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCc
Q 016982 282 TFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDG 361 (379)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg 361 (379)
.....+.. .-|...+.++. |+|.| .|||+++.||
T Consensus 221 e~~f~Lr~-----------------------------------------~~~ss~~~~~~-wsPnG----~YiAAs~~~g 254 (933)
T KOG1274|consen 221 ELQFKLRD-----------------------------------------KLSSSKFSDLQ-WSPNG----KYIAASTLDG 254 (933)
T ss_pred eeheeecc-----------------------------------------cccccceEEEE-EcCCC----cEEeeeccCC
Confidence 65443321 22444577788 87766 9999999999
Q ss_pred eEEEEeCCC
Q 016982 362 KIVTWDLES 370 (379)
Q Consensus 362 ~v~iW~~~~ 370 (379)
.|.|||.++
T Consensus 255 ~I~vWnv~t 263 (933)
T KOG1274|consen 255 QILVWNVDT 263 (933)
T ss_pred cEEEEeccc
Confidence 999999986
No 142
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.94 E-value=2.3e-24 Score=167.05 Aligned_cols=248 Identities=15% Similarity=0.192 Sum_probs=188.5
Q ss_pred eeEEEeCCCCcEEEEEecCCeEEEEEecCCc----------eEEEEEec-cCCCceEEEEEc-------CCCCEEEEEeC
Q 016982 13 ITCHAWSPDHAMVAFCPNNNEVHIYKLIQEK----------WEKLHVLQ-KHDQIVSGIDWS-------VRSNRIVTVSH 74 (379)
Q Consensus 13 i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~----------~~~~~~~~-~~~~~v~~~~~~-------~~~~~l~~~~~ 74 (379)
...+.|+|||..|++-+.|..+.+|++...- .+....++ .....|....|- |+.+++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 4568999999999999999999999985320 01111111 123457777774 66789999999
Q ss_pred CCeEEEEeccCCceeeeEEeecCCC---ceeEEEECCCCCEEEEEeCCCeEEEEEe-ecCCceeEEEEEe---ecCCcCE
Q 016982 75 DRNSYVWNQEGSEWVPTLVILRLNR---AALCVQWSPKENKFAVGSGAKTVCICYY-EQENNWWVSKLIR---KRHDSSV 147 (379)
Q Consensus 75 d~~i~vw~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d~~v~i~~~-~~~~~~~~~~~~~---~~~~~~v 147 (379)
+.-|++||.-+++....+....|.. ...+++|+|||.+|++|. ..+|++||+ +.+........+. .+..+-+
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 9999999999998777776555554 457899999999998876 589999998 4443222222221 2446788
Q ss_pred EEEEEcCCC-cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEc-CC
Q 016982 148 TSVAWHPNN-VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVG-HN 225 (379)
Q Consensus 148 ~~~~~~p~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d 225 (379)
.+++|+|-. +.++.++....+-||.- ....++..+-+|.+.|+.+.|.++|+.|++|+ .|
T Consensus 211 sc~a~sP~~~~~~a~gsY~q~~giy~~------------------~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~ 272 (406)
T KOG2919|consen 211 SCFAFSPMDSKTLAVGSYGQRVGIYND------------------DGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKD 272 (406)
T ss_pred eeeeccCCCCcceeeecccceeeeEec------------------CCCCceeeecccCCCeeeEEeccCcCeecccccCC
Confidence 999999965 68999999998888873 45677888889999999999999999999987 46
Q ss_pred CeEEEEECCCCCceeeeeeeecC-CeeeEEE--ecCCcEEEEE-eCCCeEEEEecCCC
Q 016982 226 SMIYFVDDVGPSPLAQNVAFRDL-PLRDVLF--VSEKMVIGVG-FDCNPMVFAADETG 279 (379)
Q Consensus 226 ~~i~v~d~~~~~~~~~~~~~~~~-~i~~~~~--s~~~~~l~~~-~d~~~~i~~~~~~~ 279 (379)
..|..||++.....+..+..|.. .-..|.| .|++++|++| .+|.|++|+...-+
T Consensus 273 dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g 330 (406)
T KOG2919|consen 273 DKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG 330 (406)
T ss_pred CeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCC
Confidence 78999999998777777776654 3445555 4789999966 89999999987655
No 143
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=8.5e-25 Score=176.97 Aligned_cols=248 Identities=14% Similarity=0.116 Sum_probs=196.6
Q ss_pred CcceeEEEeCCCCc-EEEEEecCCeEEEEEecCCceEEEEEeccCCC-ceEEEEEcCCCCEEEEEeCCCeEEEEeccCCc
Q 016982 10 AQCITCHAWSPDHA-MVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQ-IVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSE 87 (379)
Q Consensus 10 ~~~i~~~~~s~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~ 87 (379)
..+|.+++|.|+|. .+++++.....+.||+.+.+..++..+.++.. .+.....+|++++|+..+..|.|.+....+++
T Consensus 257 ~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~e 336 (514)
T KOG2055|consen 257 KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKE 336 (514)
T ss_pred cCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhh
Confidence 57899999999998 89999999999999999987777777777653 56778899999999999999999999999999
Q ss_pred eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCe
Q 016982 88 WVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGK 167 (379)
Q Consensus 88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~ 167 (379)
++..+.+ .+.|..+.|+.+++.|++++.+|.|.+||++... +...+...-.-.-+.++.++++.+||+|+..|.
T Consensus 337 li~s~Ki---eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~---~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~Gi 410 (514)
T KOG2055|consen 337 LITSFKI---EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNS---CLHRFVDDGSVHGTSLCISLNGSYLATGSDSGI 410 (514)
T ss_pred hhheeee---ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcc---eEEEEeecCccceeeeeecCCCceEEeccCcce
Confidence 7777754 6889999999999999999999999999999986 455552222223466777889999999999999
Q ss_pred EEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEc--CCCeEEEEECCCCCceeeeeee
Q 016982 168 CRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVG--HNSMIYFVDDVGPSPLAQNVAF 245 (379)
Q Consensus 168 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~~~ 245 (379)
|.|||...... ....+++..+..-...|+++.|+|+++.|+.+| .+..+++..+.+.. +...+..
T Consensus 411 VNIYd~~s~~~------------s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~T-VFsNfP~ 477 (514)
T KOG2055|consen 411 VNIYDGNSCFA------------STNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCT-VFSNFPT 477 (514)
T ss_pred EEEeccchhhc------------cCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEecccee-eeccCCC
Confidence 99998521111 133456666666677899999999999999887 45788988876643 2222222
Q ss_pred e---cCCeeeEEEecCCcEEEEE-eCCCeEEEEec
Q 016982 246 R---DLPLRDVLFVSEKMVIGVG-FDCNPMVFAAD 276 (379)
Q Consensus 246 ~---~~~i~~~~~s~~~~~l~~~-~d~~~~i~~~~ 276 (379)
. -+.+++++|||.|.++|.| .++.+.+|.+.
T Consensus 478 ~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 478 SNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 2 3458999999999999855 56788888753
No 144
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=5.7e-24 Score=162.91 Aligned_cols=205 Identities=16% Similarity=0.131 Sum_probs=165.5
Q ss_pred ccCCCceEEEEEcCC-CCEEEEEeCCCeEEEEeccCCc----------eee---eEEeecCCCceeEEEECC-CCCEEEE
Q 016982 51 QKHDQIVSGIDWSVR-SNRIVTVSHDRNSYVWNQEGSE----------WVP---TLVILRLNRAALCVQWSP-KENKFAV 115 (379)
Q Consensus 51 ~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~vw~~~~~~----------~~~---~~~~~~~~~~v~~~~~~~-~~~~l~~ 115 (379)
..|.+.|+++.+.+. |+++++|+.||.|.+||++... .+. .-....|+-.|.++.|-| |...+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 458899999999874 6999999999999999997642 011 111234677899999999 6678888
Q ss_pred EeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCC---CcEEEEeeCCCeEEEEeccccccccccccCCCccCCc
Q 016982 116 GSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPN---NVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTK 192 (379)
Q Consensus 116 ~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~ 192 (379)
++.|.++++||.++.+. ... ...++.|++-+++|- ..++|+|..+-.|++.|+ .
T Consensus 120 sSFDhtlKVWDtnTlQ~---a~~--F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi------------------~ 176 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQE---AVD--FKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDI------------------A 176 (397)
T ss_pred ccccceEEEeeccccee---eEE--eecCceeehhhcChhhhcceEEEEecCCCcEEEEec------------------c
Confidence 99999999999998762 333 367788899999984 357888999999999997 8
Q ss_pred ccceEEEeecCCcceEEEEECCCCCE-EEEEcCCCeEEEEECCCCCceeee--------------eeeecCCeeeEEEec
Q 016982 193 FGEQILQLDLSFSWAFGVKWSPSGNT-LAYVGHNSMIYFVDDVGPSPLAQN--------------VAFRDLPLRDVLFVS 257 (379)
Q Consensus 193 ~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~~~~d~~i~v~d~~~~~~~~~~--------------~~~~~~~i~~~~~s~ 257 (379)
++.+.+.+.+|.+.|.++.|+|...+ |++|+.||.|++||++...-+... -..|.+.+++++|+.
T Consensus 177 SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS 256 (397)
T KOG4283|consen 177 SGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS 256 (397)
T ss_pred CCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc
Confidence 89999999999999999999997665 778999999999998764222222 234667799999999
Q ss_pred CCcEEE-EEeCCCeEEEEecCC
Q 016982 258 EKMVIG-VGFDCNPMVFAADET 278 (379)
Q Consensus 258 ~~~~l~-~~~d~~~~i~~~~~~ 278 (379)
++.+++ ++.|..+++|+...+
T Consensus 257 d~~~l~~~gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 257 DARYLASCGTDDRIRVWNMESG 278 (397)
T ss_pred cchhhhhccCccceEEeecccC
Confidence 999887 889999999997654
No 145
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=7.8e-24 Score=170.67 Aligned_cols=241 Identities=18% Similarity=0.250 Sum_probs=171.9
Q ss_pred EEEeCCCCcEEEEEecCC-----eEEEEEecCCceEEEEEeccCCCceEEEEEcCC-------CCEEEEEeCCCeEEEEe
Q 016982 15 CHAWSPDHAMVAFCPNNN-----EVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVR-------SNRIVTVSHDRNSYVWN 82 (379)
Q Consensus 15 ~~~~s~~~~~l~~~~~dg-----~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------~~~l~~~~~d~~i~vw~ 82 (379)
.+..-|+.++++++-.+. .|++|+-....+-..+-+.- ...-.|++|... |+++|.|+.|..|.|||
T Consensus 130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~nlYvHHD~il-pafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWD 208 (463)
T KOG0270|consen 130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEEENLYVHHDFIL-PAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWD 208 (463)
T ss_pred cceeccCCcEEEEeeccCCceEEEEEEEcCCCcceeEecceec-cCcchhhhhhhcCCCCCCCcceEEEeccCceeEEec
Confidence 345557667777765432 35555544322111111111 123356777432 58999999999999999
Q ss_pred ccCCc-eeee------------------EEeecCCCceeEEEECCC-CCEEEEEeCCCeEEEEEeecCCceeEEEEEeec
Q 016982 83 QEGSE-WVPT------------------LVILRLNRAALCVQWSPK-ENKFAVGSGAKTVCICYYEQENNWWVSKLIRKR 142 (379)
Q Consensus 83 ~~~~~-~~~~------------------~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~ 142 (379)
+.-.. ..+. ....+|+..|.+++|+.. .+.||+|+.|.+|++||+.+++ +...+ ..
T Consensus 209 LDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~---p~~s~-~~ 284 (463)
T KOG0270|consen 209 LDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGK---PKSSI-TH 284 (463)
T ss_pred cccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCC---cceeh-hh
Confidence 85321 1111 112357778889999874 5689999999999999999998 45666 67
Q ss_pred CCcCEEEEEEcCCC-cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCC-CCEEE
Q 016982 143 HDSSVTSVAWHPNN-VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPS-GNTLA 220 (379)
Q Consensus 143 ~~~~v~~~~~~p~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~ 220 (379)
|...|.++.|+|.. ..|++|+.|+++.+.|.+ .....-..+.. .+.|-.++|.|. ...++
T Consensus 285 ~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R-----------------~~~~s~~~wk~-~g~VEkv~w~~~se~~f~ 346 (463)
T KOG0270|consen 285 HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCR-----------------DPSNSGKEWKF-DGEVEKVAWDPHSENSFF 346 (463)
T ss_pred cCCceeEEEecCCCceEEEeccccceEEeeecc-----------------CccccCceEEe-ccceEEEEecCCCceeEE
Confidence 99999999999964 899999999999999973 11111122222 456899999995 45567
Q ss_pred EEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCc-EEE-EEeCCCeEEEEecCC
Q 016982 221 YVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKM-VIG-VGFDCNPMVFAADET 278 (379)
Q Consensus 221 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~-~~~d~~~~i~~~~~~ 278 (379)
++..||+++-+|++....++.+++.|..+|.++++++.-. +++ ++.|+.+.+|++...
T Consensus 347 ~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~ 406 (463)
T KOG0270|consen 347 VSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVD 406 (463)
T ss_pred EecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCC
Confidence 7789999999999999888899999999999999998543 444 788999999987754
No 146
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=7.9e-25 Score=186.49 Aligned_cols=245 Identities=18% Similarity=0.188 Sum_probs=202.1
Q ss_pred cCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCC---CCEEEEEeCCCeEEEEeccC
Q 016982 9 FAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVR---SNRIVTVSHDRNSYVWNQEG 85 (379)
Q Consensus 9 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~vw~~~~ 85 (379)
-.-.+.+++.||+|++||+|..-|++++|++..- +....+..|...|.|+.|+-. .++|++++.|..|.+||+..
T Consensus 458 ~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l--~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r 535 (1080)
T KOG1408|consen 458 SRFGFRALAVSPDGQHLASGDRGGNLRVYDLQEL--EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR 535 (1080)
T ss_pred cccceEEEEECCCcceecccCccCceEEEEehhh--hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc
Confidence 3567999999999999999999999999999875 677778999999999999853 36899999999999999876
Q ss_pred CceeeeEEeecCCCceeEEEECCCC--CEEEEEeCCCeEEEEEeecCCceeEEEEEe----ecCCcCEEEEEEcCCCcEE
Q 016982 86 SEWVPTLVILRLNRAALCVQWSPKE--NKFAVGSGAKTVCICYYEQENNWWVSKLIR----KRHDSSVTSVAWHPNNVFL 159 (379)
Q Consensus 86 ~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~p~~~~l 159 (379)
.- .....+.+|...|+++.|.-+| ..+++++.|+.|.+ +...... -...+. ......+++++..|..+++
T Consensus 536 ny-~l~qtld~HSssITsvKFa~~gln~~MiscGADksimF-r~~qk~~--~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v 611 (1080)
T KOG1408|consen 536 NY-DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQKAS--SGRLFPRHTQTLSKTTLYDMAVDPTSKLV 611 (1080)
T ss_pred cc-chhhhhcccccceeEEEEeecCCceEEEeccCchhhhe-ehhcccc--CceeccccccccccceEEEeeeCCCcceE
Confidence 52 2333447899999999998877 67889999988754 3332110 122221 1223578999999999999
Q ss_pred EEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeec---CCcceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Q 016982 160 ATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDL---SFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGP 236 (379)
Q Consensus 160 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~ 236 (379)
++++.|..|+|||+ ..+++.+.|.+ |.+....+...|.|.||++.+.|.++.++|..++
T Consensus 612 ~t~cQDrnirif~i------------------~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg 673 (1080)
T KOG1408|consen 612 VTVCQDRNIRIFDI------------------ESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG 673 (1080)
T ss_pred EEEecccceEEEec------------------cccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc
Confidence 99999999999998 77888888854 5677889999999999999999999999999988
Q ss_pred CceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCC
Q 016982 237 SPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADET 278 (379)
Q Consensus 237 ~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~ 278 (379)
+ ++..+.+|...|+.+.|.+|-+.|. ++.|+.|.+|.+...
T Consensus 674 E-cvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 674 E-CVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred h-hhhhhcCcchheeeeeecccchhheeecCCceEEEEECchh
Confidence 7 5688899999999999999977555 889999999987653
No 147
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.2e-23 Score=162.93 Aligned_cols=253 Identities=20% Similarity=0.214 Sum_probs=185.5
Q ss_pred ceeEEEeCCCCcEEEEEe-cCCeEEEEEecCCc---e-------EEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEE
Q 016982 12 CITCHAWSPDHAMVAFCP-NNNEVHIYKLIQEK---W-------EKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYV 80 (379)
Q Consensus 12 ~i~~~~~s~~~~~l~~~~-~dg~i~i~~~~~~~---~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v 80 (379)
-.+.++|+||-+-+++.. +...+++|.+...+ . .....-+.|.-.+..+-...++.+|++++.|..|.+
T Consensus 134 hpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~l 213 (420)
T KOG2096|consen 134 HPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICL 213 (420)
T ss_pred CceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEE
Confidence 567899999987665544 45689999876431 0 111122346667778888888899999999999999
Q ss_pred EeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCce---eEEE--EEeecCCcCEEEEEEcCC
Q 016982 81 WNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNW---WVSK--LIRKRHDSSVTSVAWHPN 155 (379)
Q Consensus 81 w~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~---~~~~--~~~~~~~~~v~~~~~~p~ 155 (379)
|++. |+....+ ......-+..+.+|+|+++++++..-.|++|..--.+.. ++.+ .+ .+|...|..++|+|+
T Consensus 214 w~lk-Gq~L~~i--dtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~L-kGH~saV~~~aFsn~ 289 (420)
T KOG2096|consen 214 WDLK-GQLLQSI--DTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSL-KGHQSAVLAAAFSNS 289 (420)
T ss_pred EecC-Cceeeee--ccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhhee-ccchhheeeeeeCCC
Confidence 9998 6655554 334455678899999999999999889999987543211 1112 23 799999999999999
Q ss_pred CcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCC
Q 016982 156 NVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVG 235 (379)
Q Consensus 156 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~ 235 (379)
...+++.+.||+++|||+ +.|+....-+...+.+. .-+....+....+.++|+|+.|+.+ ....+++|..+.
T Consensus 290 S~r~vtvSkDG~wriwdt-----dVrY~~~qDpk~Lk~g~--~pl~aag~~p~RL~lsP~g~~lA~s-~gs~l~~~~se~ 361 (420)
T KOG2096|consen 290 STRAVTVSKDGKWRIWDT-----DVRYEAGQDPKILKEGS--APLHAAGSEPVRLELSPSGDSLAVS-FGSDLKVFASED 361 (420)
T ss_pred cceeEEEecCCcEEEeec-----cceEecCCCchHhhcCC--cchhhcCCCceEEEeCCCCcEEEee-cCCceEEEEccc
Confidence 999999999999999998 66655432222222222 1112223344589999999998875 456799999888
Q ss_pred CCceeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEec
Q 016982 236 PSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAAD 276 (379)
Q Consensus 236 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~ 276 (379)
++.....-..|...|.+++|+++|++++++.|..++++...
T Consensus 362 g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr~vrv~~nt 402 (420)
T KOG2096|consen 362 GKDYPELEDIHSTTISSISYSSDGKYIATCGDRYVRVIRNT 402 (420)
T ss_pred CccchhHHHhhcCceeeEEecCCCcEEeeecceeeeeecCC
Confidence 76543444568899999999999999999999999988643
No 148
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3.8e-24 Score=170.19 Aligned_cols=321 Identities=14% Similarity=0.163 Sum_probs=220.9
Q ss_pred eeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCC----ceEEEEEec-cCCCceEEEEEcCCCCEEEEEeCCCeEEE
Q 016982 6 VHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQE----KWEKLHVLQ-KHDQIVSGIDWSVRSNRIVTVSHDRNSYV 80 (379)
Q Consensus 6 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~----~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~v 80 (379)
+.+|.++|.++.|+.++++||+|+.|..+++|++..- ..+++.... .|...|.|++|.....++++|..+++|.+
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~ 131 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIK 131 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEe
Confidence 5689999999999999999999999999999998642 113444333 35578999999998999999999999999
Q ss_pred EeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCC-cEE
Q 016982 81 WNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNN-VFL 159 (379)
Q Consensus 81 w~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l 159 (379)
.|+++.+.+..+.-....+.|+.+..+|..+.|++.+.++.|.+||.+...+......+ .........+.|+|.. .+|
T Consensus 132 HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~-AN~~~~F~t~~F~P~~P~Li 210 (609)
T KOG4227|consen 132 HDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLP-ANSGKNFYTAEFHPETPALI 210 (609)
T ss_pred eecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeee-cCCCccceeeeecCCCceeE
Confidence 99999985555443334469999999999999999999999999999876631111112 3445677889999965 788
Q ss_pred EEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCce
Q 016982 160 ATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPL 239 (379)
Q Consensus 160 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~ 239 (379)
++.+..+-+.+||++ .+..+.. + ......++.....-.++.|+|+|..|++-.....-.+||+-+....
T Consensus 211 ~~~~~~~G~~~~D~R-------~~~~~~~---~-~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~ 279 (609)
T KOG4227|consen 211 LVNSETGGPNVFDRR-------MQARPVY---Q-RSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCF 279 (609)
T ss_pred EeccccCCCCceeec-------cccchHH---h-hhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccce
Confidence 888889999999873 1111000 0 0001111111223467899999999988776666778887764432
Q ss_pred eeeee-e-----ecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCC---cEEEEEEecccccCCCCCccCCCccccccee
Q 016982 240 AQNVA-F-----RDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETG---IWTFIKFLDERKTSSSGPKYGSQFSEAFGKL 310 (379)
Q Consensus 240 ~~~~~-~-----~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (379)
+.... . ....+.+++|..|-.++.++.+-.+++|.+.... -+..+..-++. ++..+ |
T Consensus 280 V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~--------~~~~~------~ 345 (609)
T KOG4227|consen 280 VLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEE--------MPSEI------F 345 (609)
T ss_pred eEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhh--------Cchhh------e
Confidence 22222 1 1124778888877665556667799999865321 11111110000 00000 0
Q ss_pred eccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCC
Q 016982 311 YGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLE 369 (379)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~ 369 (379)
.+.....+.||..-++.|. |++.. .+|++.|....+++|.-.
T Consensus 346 ------------i~~~~~VLrGHRSv~NQVR-F~~H~----~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 346 ------------IEKELTVLRGHRSVPNQVR-FSQHN----NLLVSSGVENSFKLWSDH 387 (609)
T ss_pred ------------ecceeEEEeccccccccee-ecCCc----ceEeccchhhheeccccc
Confidence 1122236689999999999 87776 899999999999999754
No 149
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.93 E-value=8.7e-24 Score=161.39 Aligned_cols=307 Identities=18% Similarity=0.192 Sum_probs=206.9
Q ss_pred CCcEEEEEec----CCeEEEEEecCCceEE-EEEeccCCCceEEEEEcCCCC-EEEEEeCC-------CeEEEEeccCCc
Q 016982 21 DHAMVAFCPN----NNEVHIYKLIQEKWEK-LHVLQKHDQIVSGIDWSVRSN-RIVTVSHD-------RNSYVWNQEGSE 87 (379)
Q Consensus 21 ~~~~l~~~~~----dg~i~i~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d-------~~i~vw~~~~~~ 87 (379)
+.-.|++|.. |+.|.+.+++.+.... ...|..|.+.|..++-+|-.+ .|+++..+ -...||.+....
T Consensus 25 d~icFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~ 104 (370)
T KOG1007|consen 25 DHICFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPL 104 (370)
T ss_pred cceEEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEeccccc
Confidence 3445666653 7889988887653222 345677889999999999765 45555432 247899986542
Q ss_pred ---------eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCcee--EEEEEeecCCcCEEEEEEcC--
Q 016982 88 ---------WVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWW--VSKLIRKRHDSSVTSVAWHP-- 154 (379)
Q Consensus 88 ---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~p-- 154 (379)
++..+. ..+-+.+.|+.|.|++..+++-. |..|.+|++....... +.......+....++-+|+|
T Consensus 105 ~~S~~~tlE~v~~Ld-teavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHH 182 (370)
T KOG1007|consen 105 GQSNSSTLECVASLD-TEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHH 182 (370)
T ss_pred CccccchhhHhhcCC-HHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCC
Confidence 122221 13446899999999999988877 7889999998776411 11111134567788899999
Q ss_pred CCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEe-ecCCcceEEEEECCCCC-EEEEEcCCCeEEEEE
Q 016982 155 NNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL-DLSFSWAFGVKWSPSGN-TLAYVGHNSMIYFVD 232 (379)
Q Consensus 155 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~-~l~~~~~d~~i~v~d 232 (379)
+++.+++. .|+++..||+ ++.++...+ ..|...|..+.|+|+.+ +|++++.||.|++||
T Consensus 183 dgnqv~tt-~d~tl~~~D~------------------RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD 243 (370)
T KOG1007|consen 183 DGNQVATT-SDSTLQFWDL------------------RTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWD 243 (370)
T ss_pred ccceEEEe-CCCcEEEEEc------------------cchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEe
Confidence 67777775 4889999997 455555555 56778899999999866 578899999999999
Q ss_pred CCCCCceeeeeeeecCCeeeEEEecC-CcEE-EEEeCCCeEEEEecCCC-cEEEEEEecccccCCCCCccCCCcccccce
Q 016982 233 DVGPSPLAQNVAFRDLPLRDVLFVSE-KMVI-GVGFDCNPMVFAADETG-IWTFIKFLDERKTSSSGPKYGSQFSEAFGK 309 (379)
Q Consensus 233 ~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l-~~~~d~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (379)
.++.+..++.+.+|...|+++.|.|. .++| .+|+|..+.++...... .-++....++....... .-.+
T Consensus 244 ~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~d---------seer 314 (370)
T KOG1007|consen 244 TRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDED---------SEER 314 (370)
T ss_pred ccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchh---------hHHh
Confidence 99998888999999999999999994 3444 47888888887654211 00111111110000000 0000
Q ss_pred eeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCC
Q 016982 310 LYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLES 370 (379)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~ 370 (379)
...-.+.....+..|.+.|++++|-+.+. ..||+-|.||+|.|=++..
T Consensus 315 ---------~kpL~dg~l~tydehEDSVY~~aWSsadP----WiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 315 ---------VKPLQDGQLETYDEHEDSVYALAWSSADP----WIFASLSYDGRVIISSVPR 362 (370)
T ss_pred ---------cccccccccccccccccceEEEeeccCCC----eeEEEeccCceEEeecCCh
Confidence 00000111224578999999999665554 8999999999999977754
No 150
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=5.1e-26 Score=193.62 Aligned_cols=196 Identities=18% Similarity=0.234 Sum_probs=176.5
Q ss_pred cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982 4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ 83 (379)
Q Consensus 4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~ 83 (379)
+.+.+|..+|.++.|+++..+|++|+.+|+|++||++.. +.+++|.+|...+.++.|+|-+.+.++++.|..+++||.
T Consensus 64 ~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA--k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~ 141 (825)
T KOG0267|consen 64 TSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA--KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDI 141 (825)
T ss_pred heeeccCCcceeeecCcchhhhcccccCCceeeeehhhh--hhhhhhhccccCcceeeeccceEEeccccccccceehhh
Confidence 457899999999999999999999999999999999987 788899999999999999999999999999999999999
Q ss_pred cCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee
Q 016982 84 EGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS 163 (379)
Q Consensus 84 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 163 (379)
+...+...+ .+|...+..+.|+|+|++++.+++|..++|||...++ +...+ ..|.+.+..+.|+|..-++++|+
T Consensus 142 Rk~Gc~~~~--~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk---~~~ef-~~~e~~v~sle~hp~e~Lla~Gs 215 (825)
T KOG0267|consen 142 RKKGCSHTY--KSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGK---LSKEF-KSHEGKVQSLEFHPLEVLLAPGS 215 (825)
T ss_pred hccCceeee--cCCcceeEEEeecCCCceeeccCCcceeeeecccccc---ccccc-ccccccccccccCchhhhhccCC
Confidence 977655555 6699999999999999999999999999999998887 56666 78999999999999999999999
Q ss_pred CCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCC
Q 016982 164 TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHN 225 (379)
Q Consensus 164 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d 225 (379)
.|+++++||+ ++.+.+.........|.+++|+|++..+++|...
T Consensus 216 ~d~tv~f~dl------------------etfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 216 SDRTVRFWDL------------------ETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred CCceeeeecc------------------ceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 9999999997 5566666666667789999999999998887543
No 151
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=1.3e-21 Score=164.86 Aligned_cols=239 Identities=11% Similarity=0.088 Sum_probs=171.4
Q ss_pred CcceeEEEeCCCCcEE-EEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEE-eCCCeEEEEeccCCc
Q 016982 10 AQCITCHAWSPDHAMV-AFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTV-SHDRNSYVWNQEGSE 87 (379)
Q Consensus 10 ~~~i~~~~~s~~~~~l-~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~vw~~~~~~ 87 (379)
...+.+++|+|+++.+ ++++.++.|++||..++ +....+..+.. +..++|+|+++.++++ +.++.+++||+.+.+
T Consensus 30 ~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~--~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~ 106 (300)
T TIGR03866 30 GQRPRGITLSKDGKLLYVCASDSDTIQVIDLATG--EVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRK 106 (300)
T ss_pred CCCCCceEECCCCCEEEEEECCCCeEEEEECCCC--cEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCe
Confidence 3457789999999876 56677899999999886 45555554443 5678999999877654 568999999999876
Q ss_pred eeeeEEeecCCCceeEEEECCCCCEEEEEeCCC-eEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEe-eCC
Q 016982 88 WVPTLVILRLNRAALCVQWSPKENKFAVGSGAK-TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATT-STD 165 (379)
Q Consensus 88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-~~d 165 (379)
.+..+ .....+.+++|+|++++++++..++ .+.+||.++.. ..... ........++|+|++++|+++ ..+
T Consensus 107 ~~~~~---~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~---~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~ 178 (300)
T TIGR03866 107 VLAEI---PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYE---IVDNV--LVDQRPRFAEFTADGKELWVSSEIG 178 (300)
T ss_pred EEeEe---eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCe---EEEEE--EcCCCccEEEECCCCCEEEEEcCCC
Confidence 54443 2234568899999999999988765 46677876654 22222 123345789999999888554 468
Q ss_pred CeEEEEeccccccccccccCCCccCCcccceEEEeecCC-------cceEEEEECCCCCEEEEE-cCCCeEEEEECCCCC
Q 016982 166 GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSF-------SWAFGVKWSPSGNTLAYV-GHNSMIYFVDDVGPS 237 (379)
Q Consensus 166 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~v~~~~~sp~~~~l~~~-~~d~~i~v~d~~~~~ 237 (379)
+.+++||+ .+++.+..+..+. .....++|+|++++++++ +.++.+.+||+.+.+
T Consensus 179 ~~v~i~d~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~ 240 (300)
T TIGR03866 179 GTVSVIDV------------------ATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE 240 (300)
T ss_pred CEEEEEEc------------------CcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 99999997 4444444443211 123568899999986554 456789999998765
Q ss_pred ceeeeeeeecCCeeeEEEecCCcEEEEE--eCCCeEEEEecCCC
Q 016982 238 PLAQNVAFRDLPLRDVLFVSEKMVIGVG--FDCNPMVFAADETG 279 (379)
Q Consensus 238 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~--~d~~~~i~~~~~~~ 279 (379)
....+. +...+.+++|+|+|++|+++ .++.+.+|+.....
T Consensus 241 -~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 241 -VLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred -EEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 333332 45678999999999988753 47899999988754
No 152
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.9e-23 Score=163.11 Aligned_cols=197 Identities=17% Similarity=0.268 Sum_probs=154.6
Q ss_pred cEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcC--CCCEEEEEeCCCeEEEEeccCCceeeeEEeecCC-C
Q 016982 23 AMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSV--RSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLN-R 99 (379)
Q Consensus 23 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~-~ 99 (379)
..+|++..+|.|++||..++ +.+..+.++...++.++|.. ....+.+|+.||+|++||++.......+....++ .
T Consensus 41 ~~vav~lSngsv~lyd~~tg--~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~ 118 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG--QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT 118 (376)
T ss_pred eeEEEEecCCeEEEEeccch--hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence 56889999999999999987 78889999999999999976 3578999999999999999988766766655555 4
Q ss_pred ceeEEEECCCCCEEEEEeC----CCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCC-cEEEEeeCCCeEEEEecc
Q 016982 100 AALCVQWSPKENKFAVGSG----AKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNN-VFLATTSTDGKCRVFSTF 174 (379)
Q Consensus 100 ~v~~~~~~~~~~~l~~~~~----d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~i~v~d~~ 174 (379)
+..+++.+-.++.+++|.. +-.|.+||++..+. ..+.+...|...|+++.|+|.. ++|++|+.||.+.+||+.
T Consensus 119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq--~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~ 196 (376)
T KOG1188|consen 119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQ--LLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK 196 (376)
T ss_pred cceEeeccCcCCeEEeccccccCceEEEEEEeccccc--hhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecC
Confidence 6677777767888888864 67899999998763 2344447899999999999965 899999999999999983
Q ss_pred ccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCC-CEEEEEcCCCeEEEEECCCCCc
Q 016982 175 IKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSG-NTLAYVGHNSMIYFVDDVGPSP 238 (379)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~i~v~d~~~~~~ 238 (379)
.. .....+...-.+...|..+.|..++ +.+.+-+...+..+|++..+.+
T Consensus 197 ~d---------------~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~ 246 (376)
T KOG1188|consen 197 KD---------------NEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE 246 (376)
T ss_pred CC---------------cchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh
Confidence 11 1111222223446679999999877 3466777888999999987763
No 153
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.92 E-value=3e-22 Score=155.66 Aligned_cols=310 Identities=13% Similarity=0.113 Sum_probs=212.7
Q ss_pred eccCcceeEEEeCC-----CCcEEEEEecCCeEEEEEecCCc-eEEEEEe--ccCCCceEEEEEcCCC----CEEEEEeC
Q 016982 7 HQFAQCITCHAWSP-----DHAMVAFCPNNNEVHIYKLIQEK-WEKLHVL--QKHDQIVSGIDWSVRS----NRIVTVSH 74 (379)
Q Consensus 7 ~~~~~~i~~~~~s~-----~~~~l~~~~~dg~i~i~~~~~~~-~~~~~~~--~~~~~~v~~~~~~~~~----~~l~~~~~ 74 (379)
..|+.+|..++|++ +-..+|+.+. ..+.+|+..... ...++.. ..|......++|+-+. .++|.++.
T Consensus 35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~ 113 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGY 113 (385)
T ss_pred ccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecc
Confidence 45778999999985 2356777665 589999987652 1223322 2366678888887543 47888889
Q ss_pred CCeEEEEeccCCceeeeEEeecCCCceeEEEECCC-CCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEc
Q 016982 75 DRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPK-ENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWH 153 (379)
Q Consensus 75 d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 153 (379)
-|.|+|.|+.++++...+ .+|...|..+.++|+ .+++++++.|..|++|++++.....+..-+ .+|.+.|.++.|+
T Consensus 114 ~GvIrVid~~~~~~~~~~--~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~-egHrdeVLSvD~~ 190 (385)
T KOG1034|consen 114 LGVIRVIDVVSGQCSKNY--RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGV-EGHRDEVLSVDFS 190 (385)
T ss_pred eeEEEEEecchhhhccce--eccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccc-ccccCcEEEEEEc
Confidence 999999999999876666 789999999999995 578999999999999999998743333333 7899999999999
Q ss_pred CCCcEEEEeeCCCeEEEEeccccccccccccC----CCccCCccc---ceE---EEeecCCcceEEEEECCCCCEEEEEc
Q 016982 154 PNNVFLATTSTDGKCRVFSTFIKGVDIKEKKE----GTSSDTKFG---EQI---LQLDLSFSWAFGVKWSPSGNTLAYVG 223 (379)
Q Consensus 154 p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~----~~~~~~~~~---~~~---~~~~~~~~~v~~~~~sp~~~~l~~~~ 223 (379)
+++.++++++.|.++++|++..+++-..-+.. +.....+.. ... .+-..|...|.++.|- |.++++-+
T Consensus 191 ~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSks 268 (385)
T KOG1034|consen 191 LDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKS 268 (385)
T ss_pred CCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecc
Confidence 99999999999999999998643321111100 000000000 111 1234566677777776 68899988
Q ss_pred CCCeEEEEECCCCCc-------------eeeeeeeecCCeeeEEEe--cCCcEEE-EEeCCCeEEEEecCCCcEEEEEEe
Q 016982 224 HNSMIYFVDDVGPSP-------------LAQNVAFRDLPLRDVLFV--SEKMVIG-VGFDCNPMVFAADETGIWTFIKFL 287 (379)
Q Consensus 224 ~d~~i~v~d~~~~~~-------------~~~~~~~~~~~i~~~~~s--~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~ 287 (379)
.++.|..|..-+-++ ....+......|+-+.|+ |-+++|| +...+.+++|+++....-......
T Consensus 269 cenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~ 348 (385)
T KOG1034|consen 269 CENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLT 348 (385)
T ss_pred cCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEE
Confidence 999999997521111 112233334456666554 5567777 567889999998765321110000
Q ss_pred cccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEe
Q 016982 288 DERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWD 367 (379)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~ 367 (379)
..--...|.+.+ |+.|+ .+|+...+|++|.-||
T Consensus 349 ------------------------------------------~s~~~~tVRQ~s-fS~dg----s~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 349 ------------------------------------------HSKSGSTVRQTS-FSRDG----SILVLVCDDGTVWRWD 381 (385)
T ss_pred ------------------------------------------eccccceeeeee-ecccC----cEEEEEeCCCcEEEEE
Confidence 011234677888 88887 8999999999999998
Q ss_pred CC
Q 016982 368 LE 369 (379)
Q Consensus 368 ~~ 369 (379)
..
T Consensus 382 rv 383 (385)
T KOG1034|consen 382 RV 383 (385)
T ss_pred ee
Confidence 64
No 154
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.92 E-value=6e-24 Score=173.79 Aligned_cols=223 Identities=14% Similarity=0.181 Sum_probs=182.9
Q ss_pred ceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeee
Q 016982 12 CITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPT 91 (379)
Q Consensus 12 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~ 91 (379)
.-.|++......++++|+..+.|+|||+... ...+.+.+|...|+++.++-...+||+++..|.|.|..+.++.....
T Consensus 81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k--l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~ 158 (673)
T KOG4378|consen 81 NAFCVACASQSLYEISGGQSGCVKIWDLRAK--LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTT 158 (673)
T ss_pred hHHHHhhhhcceeeeccCcCceeeehhhHHH--HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccc
Confidence 3345555555589999999999999999965 67778899999999999999999999999999999999998874444
Q ss_pred EEeecCCCceeEEEECCCCC-EEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCC-cEEEEeeCCCeEE
Q 016982 92 LVILRLNRAALCVQWSPKEN-KFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNN-VFLATTSTDGKCR 169 (379)
Q Consensus 92 ~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~i~ 169 (379)
+. .+....|.-+.|+|..+ +|.+++.+|.|.+||.....+ ..... ..|..+...++|+|.+ .+|++.+.|..|.
T Consensus 159 f~-~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp--~~~~~-~~HsAP~~gicfspsne~l~vsVG~Dkki~ 234 (673)
T KOG4378|consen 159 FT-IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP--IFHAS-EAHSAPCRGICFSPSNEALLVSVGYDKKIN 234 (673)
T ss_pred ee-cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc--ccchh-hhccCCcCcceecCCccceEEEecccceEE
Confidence 43 22345677999999765 566788899999999987763 22333 7899999999999976 7888999999999
Q ss_pred EEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCC
Q 016982 170 VFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLP 249 (379)
Q Consensus 170 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 249 (379)
+||+ ........+.. ..+...++|+++|.+|+.|...|.|..||++..+..+..+..|...
T Consensus 235 ~yD~------------------~s~~s~~~l~y-~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~s 295 (673)
T KOG4378|consen 235 IYDI------------------RSQASTDRLTY-SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDAS 295 (673)
T ss_pred Eeec------------------ccccccceeee-cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccc
Confidence 9997 33333333332 5678999999999999999999999999999998888999999999
Q ss_pred eeeEEEecCC
Q 016982 250 LRDVLFVSEK 259 (379)
Q Consensus 250 i~~~~~s~~~ 259 (379)
|++++|-+..
T Consensus 296 Vt~vafq~s~ 305 (673)
T KOG4378|consen 296 VTRVAFQPSP 305 (673)
T ss_pred eeEEEeeecc
Confidence 9999998864
No 155
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.92 E-value=1.9e-23 Score=159.56 Aligned_cols=248 Identities=18% Similarity=0.275 Sum_probs=187.5
Q ss_pred ceeccCcceeEEEeCCC-CcEEEEEecC-------CeEEEEEecCCc-------eEEEEEec-cCCCceEEEEEcCCCCE
Q 016982 5 AVHQFAQCITCHAWSPD-HAMVAFCPNN-------NEVHIYKLIQEK-------WEKLHVLQ-KHDQIVSGIDWSVRSNR 68 (379)
Q Consensus 5 ~~~~~~~~i~~~~~s~~-~~~l~~~~~d-------g~i~i~~~~~~~-------~~~~~~~~-~~~~~v~~~~~~~~~~~ 68 (379)
.+++|.+.|..++-+|. .+.|+++..+ -...||.+.... ++++..+. .+-+.|.|+.|.|++..
T Consensus 58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~k 137 (370)
T KOG1007|consen 58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDK 137 (370)
T ss_pred hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCe
Confidence 46778899999999994 4566666441 246799986531 33444444 34568999999999999
Q ss_pred EEEEeCCCeEEEEeccCCce-eeeEEe---ecCCCceeEEEECC--CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeec
Q 016982 69 IVTVSHDRNSYVWNQEGSEW-VPTLVI---LRLNRAALCVQWSP--KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKR 142 (379)
Q Consensus 69 l~~~~~d~~i~vw~~~~~~~-~~~~~~---~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~ 142 (379)
|++.. |..|.+|++..... ...+.. ..+....++-+|+| +++.+++.+ |+++..||+++... ...+...
T Consensus 138 lasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~---~~sI~dA 212 (370)
T KOG1007|consen 138 LASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKK---NNSIEDA 212 (370)
T ss_pred eEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhh---hcchhhh
Confidence 98876 77899999987753 222211 12345677889999 788888766 78999999998763 3334478
Q ss_pred CCcCEEEEEEcCCC-cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCC-CCEEE
Q 016982 143 HDSSVTSVAWHPNN-VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPS-GNTLA 220 (379)
Q Consensus 143 ~~~~v~~~~~~p~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~ 220 (379)
|...|..+.|+|+. .+|++|+.||.|++||+ ..+..++.++.+|..+|+++.|+|. .++++
T Consensus 213 Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~-----------------R~tk~pv~el~~HsHWvW~VRfn~~hdqLiL 275 (370)
T KOG1007|consen 213 HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDT-----------------RKTKFPVQELPGHSHWVWAVRFNPEHDQLIL 275 (370)
T ss_pred hcceeeeccCCCCceEEEEEcCCCccEEEEec-----------------cCCCccccccCCCceEEEEEEecCccceEEE
Confidence 99999999999986 57889999999999998 4778889999999999999999994 66788
Q ss_pred EEcCCCeEEEEECCCC------------------------C----ceeeeeeeecCCeeeEEEecCCcEEE--EEeCCCe
Q 016982 221 YVGHNSMIYFVDDVGP------------------------S----PLAQNVAFRDLPLRDVLFVSEKMVIG--VGFDCNP 270 (379)
Q Consensus 221 ~~~~d~~i~v~d~~~~------------------------~----~~~~~~~~~~~~i~~~~~s~~~~~l~--~~~d~~~ 270 (379)
+++.|..|.+|....- + ..+.++..|...|++++||.-..++. -++||.+
T Consensus 276 s~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRv 355 (370)
T KOG1007|consen 276 SGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRV 355 (370)
T ss_pred ecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceE
Confidence 9999999999954221 0 02345667889999999999777665 5688888
Q ss_pred EEEE
Q 016982 271 MVFA 274 (379)
Q Consensus 271 ~i~~ 274 (379)
.|=.
T Consensus 356 iIs~ 359 (370)
T KOG1007|consen 356 IISS 359 (370)
T ss_pred Eeec
Confidence 7643
No 156
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=1.7e-23 Score=165.34 Aligned_cols=221 Identities=15% Similarity=0.246 Sum_probs=166.0
Q ss_pred cceeccCcceeEEEeCC-CCcEEEEEecCCeEEEEEecCCceEE-EEEeccCCCceEEEEEcCCC-CEEEEEeCCCeEEE
Q 016982 4 IAVHQFAQCITCHAWSP-DHAMVAFCPNNNEVHIYKLIQEKWEK-LHVLQKHDQIVSGIDWSVRS-NRIVTVSHDRNSYV 80 (379)
Q Consensus 4 ~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v 80 (379)
.++.+|...=++++||| ....|++|.--+.|++|...++.|.. ...+.+|...|-.++|||.. ..|++|+.||+|+|
T Consensus 205 ~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrI 284 (440)
T KOG0302|consen 205 FTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRI 284 (440)
T ss_pred EEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEE
Confidence 45667888889999999 23457788777899999999887654 34567799999999999976 68899999999999
Q ss_pred EeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCC-cEE
Q 016982 81 WNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNN-VFL 159 (379)
Q Consensus 81 w~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l 159 (379)
||++.+.....+....|.+.|+.++|+.+-.+||+|+.||+++|||++.-+.......+ ..|..+|+++.|+|.. ..|
T Consensus 285 WDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~f-k~Hk~pItsieW~p~e~s~i 363 (440)
T KOG0302|consen 285 WDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATF-KYHKAPITSIEWHPHEDSVI 363 (440)
T ss_pred EEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeE-EeccCCeeEEEeccccCceE
Confidence 99999865666666889999999999998889999999999999999987644345566 8899999999999964 778
Q ss_pred EEeeCCCeEEEEeccccccccc--cccCCCccCCcccceEEEeecCCcceEEEEECCC-CCEEEEEcCCCe
Q 016982 160 ATTSTDGKCRVFSTFIKGVDIK--EKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPS-GNTLAYVGHNSM 227 (379)
Q Consensus 160 ~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~ 227 (379)
++++.|.+|.+||+....-+-. ........+ -..+.+...++ ...+..+.|++. -.+|++.+.||.
T Consensus 364 aasg~D~QitiWDlsvE~D~ee~~~~a~~~L~d-lPpQLLFVHqG-Qke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 364 AASGEDNQITIWDLSVEADEEEIDQEAAEGLQD-LPPQLLFVHQG-QKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred EeccCCCcEEEEEeeccCChhhhccccccchhc-CCceeEEEecc-hhHhhhheeccCCCCeEEEecccce
Confidence 8889999999999864221100 000000000 00112222122 456888999994 456777777774
No 157
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.1e-24 Score=194.75 Aligned_cols=251 Identities=17% Similarity=0.228 Sum_probs=198.7
Q ss_pred cCcceeEEEeCCCCcE----EEEEecCCeEEEEEecC----CceEEEEEeccCCCceEEEEEcCCC-CEEEEEeCCCeEE
Q 016982 9 FAQCITCHAWSPDHAM----VAFCPNNNEVHIYKLIQ----EKWEKLHVLQKHDQIVSGIDWSVRS-NRIVTVSHDRNSY 79 (379)
Q Consensus 9 ~~~~i~~~~~s~~~~~----l~~~~~dg~i~i~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~ 79 (379)
....-+.++|.+.|.. ||.|..||.|.+||... .....+.+...|.+.|..+.|++.. +.|++|+.||.|.
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~ 142 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEIL 142 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEE
Confidence 3567788999987765 88899999999999864 2345667788899999999999976 5999999999999
Q ss_pred EEeccCCceeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCC-c
Q 016982 80 VWNQEGSEWVPTLVILRLNRAALCVQWSP-KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNN-V 157 (379)
Q Consensus 80 vw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~ 157 (379)
|||+...+.............|.+++|+. ....|++++.+|...|||++..+. +.+.-.......+..++|+|+. .
T Consensus 143 iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~p--ii~ls~~~~~~~~S~l~WhP~~aT 220 (1049)
T KOG0307|consen 143 IWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKP--IIKLSDTPGRMHCSVLAWHPDHAT 220 (1049)
T ss_pred EeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCc--ccccccCCCccceeeeeeCCCCce
Confidence 99998865322222233567899999997 456788999999999999998863 2332212233568899999987 6
Q ss_pred EEEEeeCCC---eEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCC-CEEEEEcCCCeEEEEEC
Q 016982 158 FLATTSTDG---KCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSG-NTLAYVGHNSMIYFVDD 233 (379)
Q Consensus 158 ~l~~~~~d~---~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~i~v~d~ 233 (379)
.+++++.|. .|.+||+ +....+++.+++|...|.++.|++.+ .+|++++.|+.|.+|+.
T Consensus 221 ql~~As~dd~~PviqlWDl-----------------R~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~ 283 (1049)
T KOG0307|consen 221 QLLVASGDDSAPVIQLWDL-----------------RFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNP 283 (1049)
T ss_pred eeeeecCCCCCceeEeecc-----------------cccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecC
Confidence 666666543 5999997 35567788889999999999999955 88999999999999999
Q ss_pred CCCCceeeeeeeecCCeeeEEEecCCc-EEE-EEeCCCeEEEEecCCC
Q 016982 234 VGPSPLAQNVAFRDLPLRDVLFVSEKM-VIG-VGFDCNPMVFAADETG 279 (379)
Q Consensus 234 ~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~-~~~d~~~~i~~~~~~~ 279 (379)
++++ .+..+...+..+..+.|+|... +++ ++.||.|-|+...+..
T Consensus 284 ~tgE-vl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 284 NTGE-VLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCce-EeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9876 4577776778899999999765 555 7899999999977644
No 158
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.92 E-value=2.9e-23 Score=161.00 Aligned_cols=243 Identities=14% Similarity=0.188 Sum_probs=187.5
Q ss_pred CcceeEEEeC-------CCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCc---eEEEEEcCCCCEEEEEeCCCeEE
Q 016982 10 AQCITCHAWS-------PDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQI---VSGIDWSVRSNRIVTVSHDRNSY 79 (379)
Q Consensus 10 ~~~i~~~~~s-------~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~~~d~~i~ 79 (379)
...|+..+|- |+..++|+.+++.-|++||.-+++.+.......|... ..+++|+|||.+|+.|. ...|+
T Consensus 104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcir 182 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIR 182 (406)
T ss_pred CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEE
Confidence 5677777774 6778999999999999999999865554444445443 46899999999998764 57899
Q ss_pred EEec-cCCceeeeEEeecC-----CCceeEEEECC-CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEE
Q 016982 80 VWNQ-EGSEWVPTLVILRL-----NRAALCVQWSP-KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAW 152 (379)
Q Consensus 80 vw~~-~~~~~~~~~~~~~~-----~~~v~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 152 (379)
++|+ +.+...+......+ .+-+.+++|+| +.+.+++++....+-||.-.... ....+ .+|.+.|+.++|
T Consensus 183 vFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~---pl~ll-ggh~gGvThL~~ 258 (406)
T KOG2919|consen 183 VFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR---PLQLL-GGHGGGVTHLQW 258 (406)
T ss_pred EeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC---ceeee-cccCCCeeeEEe
Confidence 9999 44443333322223 57789999999 56699999998899998877766 35566 799999999999
Q ss_pred cCCCcEEEEeeC-CCeEEEEeccccccccccccCCCccCCcccceEEEeecCCc-ce--EEEEECCCCCEEEEEcCCCeE
Q 016982 153 HPNNVFLATTST-DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFS-WA--FGVKWSPSGNTLAYVGHNSMI 228 (379)
Q Consensus 153 ~p~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v--~~~~~sp~~~~l~~~~~d~~i 228 (379)
.++|+.|.+|.. +..|..||+ .....++..+..|.. .- .-....|++++|++|+.||.|
T Consensus 259 ~edGn~lfsGaRk~dkIl~WDi-----------------R~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V 321 (406)
T KOG2919|consen 259 CEDGNKLFSGARKDDKILCWDI-----------------RYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSV 321 (406)
T ss_pred ccCcCeecccccCCCeEEEEee-----------------hhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccE
Confidence 999999999986 778999998 356667777766644 22 234567899999999999999
Q ss_pred EEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEE
Q 016982 229 YFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFA 274 (379)
Q Consensus 229 ~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~ 274 (379)
++||+.+....+..+..+...++.++++|--.++|+++...+.-+.
T Consensus 322 ~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr~f~~~ 367 (406)
T KOG2919|consen 322 RVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQRIFKYP 367 (406)
T ss_pred EEEecCCCCCcccccccccccccceecCcccceeeeccCceeecCC
Confidence 9999998554456667788889999999998888877766554333
No 159
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.9e-23 Score=167.42 Aligned_cols=242 Identities=17% Similarity=0.208 Sum_probs=183.6
Q ss_pred cceeEEEeCC-------CCcEEEEEecCCeEEEEEecCCc-eEE------------------EEEeccCCCceEEEEEcC
Q 016982 11 QCITCHAWSP-------DHAMVAFCPNNNEVHIYKLIQEK-WEK------------------LHVLQKHDQIVSGIDWSV 64 (379)
Q Consensus 11 ~~i~~~~~s~-------~~~~l~~~~~dg~i~i~~~~~~~-~~~------------------~~~~~~~~~~v~~~~~~~ 64 (379)
....|++|-. .|+++|.|+.|..|.|||+.-.. ..+ -..-.+|+..|.+++|+.
T Consensus 174 afPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~ 253 (463)
T KOG0270|consen 174 AFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNR 253 (463)
T ss_pred CcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcc
Confidence 4456777743 35899999999999999985210 011 112346888999999987
Q ss_pred CC-CEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeec
Q 016982 65 RS-NRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSP-KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKR 142 (379)
Q Consensus 65 ~~-~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~ 142 (379)
.- +.|++|+.|.+|++||+.++++...+ ..|...|.++.|+| ....|++|+.|++|.+.|.+.... .... -.
T Consensus 254 ~~~nVLaSgsaD~TV~lWD~~~g~p~~s~--~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~--s~~~--wk 327 (463)
T KOG0270|consen 254 NFRNVLASGSADKTVKLWDVDTGKPKSSI--THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN--SGKE--WK 327 (463)
T ss_pred ccceeEEecCCCceEEEEEcCCCCcceeh--hhcCCceeEEEecCCCceEEEeccccceEEeeeccCccc--cCce--EE
Confidence 64 68899999999999999999976666 56889999999999 577999999999999999986432 1222 34
Q ss_pred CCcCEEEEEEcCCC-cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCC-CCEEE
Q 016982 143 HDSSVTSVAWHPNN-VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPS-GNTLA 220 (379)
Q Consensus 143 ~~~~v~~~~~~p~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~ 220 (379)
..+.|..++|.|.. ..+++++.||+++-+|+ +..++++.++..|.++|.++++++. -.+|+
T Consensus 328 ~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~-----------------R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~ 390 (463)
T KOG0270|consen 328 FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDI-----------------RNPGKPVWTLKAHDDEISGLSVNIQTPGLLS 390 (463)
T ss_pred eccceEEEEecCCCceeEEEecCCceEEeeec-----------------CCCCCceeEEEeccCCcceEEecCCCCccee
Confidence 56789999999976 67788889999999998 3667999999999999999999985 45788
Q ss_pred EEcCCCeEEEEECCCCCceeeeeeee---cCCeeeEEEecCCc-EEE-EEeCCCeEEEEecC
Q 016982 221 YVGHNSMIYFVDDVGPSPLAQNVAFR---DLPLRDVLFVSEKM-VIG-VGFDCNPMVFAADE 277 (379)
Q Consensus 221 ~~~~d~~i~v~d~~~~~~~~~~~~~~---~~~i~~~~~s~~~~-~l~-~~~d~~~~i~~~~~ 277 (379)
+++.|+.|++|++....+. ....| -+...+.++.|+-. +++ +|..+.+++|+...
T Consensus 391 t~s~d~~Vklw~~~~~~~~--~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~ 450 (463)
T KOG0270|consen 391 TASTDKVVKLWKFDVDSPK--SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFT 450 (463)
T ss_pred eccccceEEEEeecCCCCc--ccccccccccceeecccCCCcceEEEecCccceEEEeeccc
Confidence 9999999999998665431 11222 23356667777543 444 55666688887543
No 160
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.92 E-value=1.5e-23 Score=162.89 Aligned_cols=259 Identities=14% Similarity=0.173 Sum_probs=190.4
Q ss_pred ccCcceeEEEeCCC----CcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCC-CEEEEEeCCCeEEEEe
Q 016982 8 QFAQCITCHAWSPD----HAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRS-NRIVTVSHDRNSYVWN 82 (379)
Q Consensus 8 ~~~~~i~~~~~s~~----~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~vw~ 82 (379)
.|....+.++|+-+ ..++|+|+.-|.|+|.|+.++ +....+.+|...|+.+.+.|+. +++++++.|..|++|+
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~--~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwn 164 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSG--QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWN 164 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchh--hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEe
Confidence 36677788888653 357888999999999999987 7888899999999999999987 7899999999999999
Q ss_pred ccCCceeeeEE-eecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCcee---EE----------------EEE---
Q 016982 83 QEGSEWVPTLV-ILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWW---VS----------------KLI--- 139 (379)
Q Consensus 83 ~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~---~~----------------~~~--- 139 (379)
+++..++..+- ..+|...|.++.|+++|.+|++++.|.++++|+++..+-.. .. ..+
T Consensus 165 I~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~f 244 (385)
T KOG1034|consen 165 IQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDF 244 (385)
T ss_pred ccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccc
Confidence 99998877663 34689999999999999999999999999999998432100 00 000
Q ss_pred --eecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEE--EECCC
Q 016982 140 --RKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGV--KWSPS 215 (379)
Q Consensus 140 --~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~sp~ 215 (379)
..-|...|.|+.|- |+++++-+-++.|..|....-+....+-.++ ......+.++......|+-+ +|+|-
T Consensus 245 st~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~----es~~Ti~~~~~~~~c~iWfirf~~d~~ 318 (385)
T KOG1034|consen 245 STTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPP----ESATTILGEFDYPMCDIWFIRFAFDPW 318 (385)
T ss_pred cccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCC----ccceeeeeEeccCccceEEEEEeecHH
Confidence 13466677777774 6789988889999999762000000000000 11223445555555555554 55677
Q ss_pred CCEEEEEcCCCeEEEEECCCCCcee-eeeee--ecCCeeeEEEecCCcEEE-EEeCCCeEEEE
Q 016982 216 GNTLAYVGHNSMIYFVDDVGPSPLA-QNVAF--RDLPLRDVLFVSEKMVIG-VGFDCNPMVFA 274 (379)
Q Consensus 216 ~~~l~~~~~d~~i~v~d~~~~~~~~-~~~~~--~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~ 274 (379)
++.||.|...|.+.+||++...+.. .++.. ....|...+|+.||.+|+ .+.|+.+.-|+
T Consensus 319 ~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 319 QKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred HHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 8999999999999999998876532 22222 245699999999999877 67777776554
No 161
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.91 E-value=8.9e-23 Score=172.97 Aligned_cols=272 Identities=20% Similarity=0.295 Sum_probs=205.6
Q ss_pred ceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeee
Q 016982 12 CITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPT 91 (379)
Q Consensus 12 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~ 91 (379)
.|..++|-|||..|+.+. +..+.+||...+ ..+.++++|.+.|++++|+.||+.+++|+.|+.|.+|+-.-.. .
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG--~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG---~ 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDG--TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG---I 87 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCc--ccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc---e
Confidence 899999999999888774 458999999988 7899999999999999999999999999999999999865433 3
Q ss_pred EEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEE
Q 016982 92 LVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVF 171 (379)
Q Consensus 92 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~ 171 (379)
+. ..|...|.|+.|+|-...+++++-. ..-+|..+... +.+ ......+.+++|..||++|+.|-.+|+|.+-
T Consensus 88 Lk-YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~---V~K---~kss~R~~~CsWtnDGqylalG~~nGTIsiR 159 (1081)
T KOG1538|consen 88 LK-YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKS---VSK---HKSSSRIICCSWTNDGQYLALGMFNGTISIR 159 (1081)
T ss_pred ee-eccCCeeeEeecCchHHHhhhcchh-hccccChhhhh---HHh---hhhheeEEEeeecCCCcEEEEeccCceEEee
Confidence 33 5689999999999999999998753 34567665543 111 2234578899999999999999999999988
Q ss_pred eccccccccccccCCCccCCcccceEEEee---cCCcceEEEEECCCC-----CEEEEEcCCCeEEEEECCCCCceeeee
Q 016982 172 STFIKGVDIKEKKEGTSSDTKFGEQILQLD---LSFSWAFGVKWSPSG-----NTLAYVGHNSMIYFVDDVGPSPLAQNV 243 (379)
Q Consensus 172 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~sp~~-----~~l~~~~~d~~i~v~d~~~~~~~~~~~ 243 (379)
+ ..++....++ +.+.+|++++|+|.. ..+++.....++.+|.+.... + ..-
T Consensus 160 N-------------------k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~-I-gk~ 218 (1081)
T KOG1538|consen 160 N-------------------KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ-I-GKD 218 (1081)
T ss_pred c-------------------CCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee-e-ccc
Confidence 6 3444444443 467789999999953 357777777888888765421 1 111
Q ss_pred eeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccc
Q 016982 244 AFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDA 322 (379)
Q Consensus 244 ~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (379)
..-+-...++.+.++|.++. +|+|+.+.+|..++- .+ ..
T Consensus 219 r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~Gv---rL-GT------------------------------------ 258 (1081)
T KOG1538|consen 219 RALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGV---RL-GT------------------------------------ 258 (1081)
T ss_pred ccCCCCchhheeccCCcEEEEccCCCceEEEeecCe---EE-ee------------------------------------
Confidence 12234456889999999876 888999998875542 11 10
Q ss_pred cccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCC
Q 016982 323 VESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLES 370 (379)
Q Consensus 323 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~ 370 (379)
+......|+.|.+. |++++++.|..||+|--|++-.
T Consensus 259 -------vg~~D~WIWtV~~~-----PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 259 -------VGEQDSWIWTVQAK-----PNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred -------ccccceeEEEEEEc-----cCCceEEEEEccCeeehhhhHH
Confidence 01234568888844 4559999999999999998753
No 162
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.91 E-value=1.5e-22 Score=170.40 Aligned_cols=257 Identities=9% Similarity=0.085 Sum_probs=187.7
Q ss_pred eeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCC-CEEEEEeCCCeEEEEecc
Q 016982 6 VHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRS-NRIVTVSHDRNSYVWNQE 84 (379)
Q Consensus 6 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~vw~~~ 84 (379)
...|...|..+.|-|-...|++++.|.++++||+++++..-...+.+|...|.+++|.|.. ..|++|+.||.|.|||+.
T Consensus 96 ~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R 175 (720)
T KOG0321|consen 96 PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCR 175 (720)
T ss_pred cccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEe
Confidence 3458999999999996678899999999999999998555555689999999999999977 578999999999999975
Q ss_pred CCce--------------------ee-----eEEeecCCCceeE---EEECCCCCEEEEEeC-CCeEEEEEeecCCceeE
Q 016982 85 GSEW--------------------VP-----TLVILRLNRAALC---VQWSPKENKFAVGSG-AKTVCICYYEQENNWWV 135 (379)
Q Consensus 85 ~~~~--------------------~~-----~~~~~~~~~~v~~---~~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~ 135 (379)
-... .. .-....+...+.+ +.+..|...||+++. |+.|+|||++.......
T Consensus 176 ~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r 255 (720)
T KOG0321|consen 176 CNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYR 255 (720)
T ss_pred ccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccc
Confidence 3210 00 0001122333444 555668888998888 99999999987653111
Q ss_pred EEEEe----ecC---CcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCc--c
Q 016982 136 SKLIR----KRH---DSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFS--W 206 (379)
Q Consensus 136 ~~~~~----~~~---~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 206 (379)
..... ..| ...+.++.....|.+|.+.+.|+.|+.|++... ...++..+.++.. -
T Consensus 256 ~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~----------------s~sP~~~~sg~~~~sf 319 (720)
T KOG0321|consen 256 QEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSL----------------SISPVAEFSGKLNSSF 319 (720)
T ss_pred cCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEecccc----------------CcCchhhccCccccee
Confidence 11110 122 235677777777888888888999999997311 1122222322211 1
Q ss_pred eEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEec--CCcEEEEEeCCCeEEEEecCC
Q 016982 207 AFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVS--EKMVIGVGFDCNPMVFAADET 278 (379)
Q Consensus 207 v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~d~~~~i~~~~~~ 278 (379)
-..-..+|++.+|++|+.|...++|.+.+.......+.+|...|+.++|.| ....++++.|..+++|.+.+.
T Consensus 320 ~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 320 YVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred eeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 122346899999999999999999999998877778889999999999988 567888999999999998543
No 163
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.91 E-value=1.1e-22 Score=166.42 Aligned_cols=262 Identities=17% Similarity=0.275 Sum_probs=192.2
Q ss_pred CCeEEEEEecCCceEEEEEeccC--CCceEEEEEcCCCCEEEEE--eCCCeEEEEeccCCc-eeeeEEeecCCCceeEEE
Q 016982 31 NNEVHIYKLIQEKWEKLHVLQKH--DQIVSGIDWSVRSNRIVTV--SHDRNSYVWNQEGSE-WVPTLVILRLNRAALCVQ 105 (379)
Q Consensus 31 dg~i~i~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~--~~d~~i~vw~~~~~~-~~~~~~~~~~~~~v~~~~ 105 (379)
...++|||...-+ ....+..| ...+.++.|+.... |+++ +.|..+++|.-.... .++.... .....-.|++
T Consensus 11 gd~~kl~D~s~~~--~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k-~~gd~~~Cv~ 86 (673)
T KOG4378|consen 11 GDKTKLSDFSDLE--TKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRK-LTGDNAFCVA 86 (673)
T ss_pred CCceEEeeccccc--CccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeec-cccchHHHHh
Confidence 3489999997642 22222222 23488999987653 4444 567889999755441 1222221 1223445555
Q ss_pred ECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccC
Q 016982 106 WSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKE 185 (379)
Q Consensus 106 ~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 185 (379)
......++++|+..+.|+|||++... +.+.+ ..|...|+++.++-.+.+||+++..|.|.|..+
T Consensus 87 ~~s~S~y~~sgG~~~~Vkiwdl~~kl---~hr~l-kdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~------------ 150 (673)
T KOG4378|consen 87 CASQSLYEISGGQSGCVKIWDLRAKL---IHRFL-KDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGT------------ 150 (673)
T ss_pred hhhcceeeeccCcCceeeehhhHHHH---Hhhhc-cCCcceeEEEEecCCcceeEEeccCCcEEEEec------------
Confidence 55566899999999999999999654 45556 899999999999999999999999999999986
Q ss_pred CCccCCcccceEEEeecC-CcceEEEEECCCCCE-EEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCc-EE
Q 016982 186 GTSSDTKFGEQILQLDLS-FSWAFGVKWSPSGNT-LAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKM-VI 262 (379)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l 262 (379)
.++.....|... ...|.-+.|+|..+. |.+++.+|.|.+||+....+.......|..|...++|+|... +|
T Consensus 151 ------~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~ 224 (673)
T KOG4378|consen 151 ------KTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALL 224 (673)
T ss_pred ------ccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceE
Confidence 455555555443 345678999997665 567889999999999988877777788999999999999765 44
Q ss_pred E-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeee
Q 016982 263 G-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIV 341 (379)
Q Consensus 263 ~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 341 (379)
+ .|.|..|.+|+......-+.+ .-..+...|+
T Consensus 225 vsVG~Dkki~~yD~~s~~s~~~l-----------------------------------------------~y~~Plstva 257 (673)
T KOG4378|consen 225 VSVGYDKKINIYDIRSQASTDRL-----------------------------------------------TYSHPLSTVA 257 (673)
T ss_pred EEecccceEEEeeccccccccee-----------------------------------------------eecCCcceee
Confidence 4 789999999986643211111 1234677888
Q ss_pred eecccCCcccceEEEeecCceEEEEeCCC
Q 016982 342 PLREAGSSRITRFTTSGLDGKIVTWDLES 370 (379)
Q Consensus 342 ~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~ 370 (379)
|.++| .+|+.|...|.|..||++.
T Consensus 258 -f~~~G----~~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 258 -FSECG----TYLCAGNSKGELIAYDMRS 281 (673)
T ss_pred -ecCCc----eEEEeecCCceEEEEeccc
Confidence 88776 9999999999999999986
No 164
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.90 E-value=1.4e-22 Score=170.79 Aligned_cols=165 Identities=17% Similarity=0.217 Sum_probs=119.9
Q ss_pred cceeccCcceeEEEeCC-CCcEEEEEecCCeEEEEEecCCceEEE----EEeccCCCceEEEEEcCCCCEEEEEeCCCeE
Q 016982 4 IAVHQFAQCITCHAWSP-DHAMVAFCPNNNEVHIYKLIQEKWEKL----HVLQKHDQIVSGIDWSVRSNRIVTVSHDRNS 78 (379)
Q Consensus 4 ~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 78 (379)
..+..|.+.|+.+.|+| +..+||+|+.|..|+||.+..+-.+.+ ..+.+..-.|.++.|+|...-|+..+..|.+
T Consensus 73 ~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v 152 (1012)
T KOG1445|consen 73 GILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSV 152 (1012)
T ss_pred ceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceE
Confidence 34688999999999999 557899999999999999985421221 2233334578899999987656555667999
Q ss_pred EEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcC-EEEEEEcCCCc
Q 016982 79 YVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSS-VTSVAWHPNNV 157 (379)
Q Consensus 79 ~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~p~~~ 157 (379)
++||+.+++. .+...+|...|.+..|+.||.++++.+.|+.|+|||.+.... ..+.. .+|.+. -..+.|.-+-.
T Consensus 153 ~i~D~stqk~--~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~--piQ~t-e~H~~~rdsRv~w~Gn~~ 227 (1012)
T KOG1445|consen 153 YITDISTQKT--AVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASME--PIQTT-EGHGGMRDSRVLWAGNWE 227 (1012)
T ss_pred EEEEcccCce--eecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCC--ccccc-cccccchhheeeeccchh
Confidence 9999999884 445578999999999999999999999999999999887643 23333 555432 23455544333
Q ss_pred EEEEeeC----CCeEEEEec
Q 016982 158 FLATTST----DGKCRVFST 173 (379)
Q Consensus 158 ~l~~~~~----d~~i~v~d~ 173 (379)
.|++.+. -..|++||.
T Consensus 228 rlisTGF~~~R~reV~~~Dt 247 (1012)
T KOG1445|consen 228 RLISTGFTTKRIREVRAYDT 247 (1012)
T ss_pred hhhhcccchhhheeeeeeec
Confidence 4544433 245666763
No 165
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.90 E-value=7.4e-22 Score=151.07 Aligned_cols=243 Identities=15% Similarity=0.232 Sum_probs=183.2
Q ss_pred eccCcceeEEEeCCCC-----cEEEEEecCCeEEEEEecC--CceEEEEEec-----cCCCceEEEEEcCC-CCEEEEEe
Q 016982 7 HQFAQCITCHAWSPDH-----AMVAFCPNNNEVHIYKLIQ--EKWEKLHVLQ-----KHDQIVSGIDWSVR-SNRIVTVS 73 (379)
Q Consensus 7 ~~~~~~i~~~~~s~~~-----~~l~~~~~dg~i~i~~~~~--~~~~~~~~~~-----~~~~~v~~~~~~~~-~~~l~~~~ 73 (379)
+.|.-+++.+.|.|+. .+||+.+ ..+++|.+.. .+.++...+. .+..++++..|+.- -++|.+++
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 6788999999999976 3567654 3899999974 3333333332 35568999999864 47899999
Q ss_pred CCCeEEEEeccCCce-eeeEEeecCCCceeEEEECCCC-CEEEEEeCCCeEEEEEeecCCceeEEEEEe--ecCCcCEEE
Q 016982 74 HDRNSYVWNQEGSEW-VPTLVILRLNRAALCVQWSPKE-NKFAVGSGAKTVCICYYEQENNWWVSKLIR--KRHDSSVTS 149 (379)
Q Consensus 74 ~d~~i~vw~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~--~~~~~~v~~ 149 (379)
-|-+..|||++++.. .....+..|..+|..++|...+ +.+|+.+.||.+++||++..+. ...+. .....+...
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH---STIIYE~p~~~~pLlR 247 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH---STIIYEDPSPSTPLLR 247 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc---ceEEecCCCCCCccee
Confidence 999999999998732 1122346899999999999854 5789999999999999998763 22221 222567889
Q ss_pred EEEcCCC-cEEEEeeCC-CeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECC-CCCEEEEEcCCC
Q 016982 150 VAWHPNN-VFLATTSTD-GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSP-SGNTLAYVGHNS 226 (379)
Q Consensus 150 ~~~~p~~-~~l~~~~~d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~ 226 (379)
++|+++. +++|+-..| ..|.|.|+ .....++..++.|.+.|+.++|.| ....+++++.|.
T Consensus 248 LswnkqDpnymATf~~dS~~V~iLDi-----------------R~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~ 310 (364)
T KOG0290|consen 248 LSWNKQDPNYMATFAMDSNKVVILDI-----------------RVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDC 310 (364)
T ss_pred eccCcCCchHHhhhhcCCceEEEEEe-----------------cCCCcceehhhcCcccccceEecCCCCceeeecCCcc
Confidence 9999865 777776554 56889988 355678899999999999999999 467899999999
Q ss_pred eEEEEECCCCCc-----eeeeeeeecCCeeeEEEec-CCcEEEEEeCCCeEE
Q 016982 227 MIYFVDDVGPSP-----LAQNVAFRDLPLRDVLFVS-EKMVIGVGFDCNPMV 272 (379)
Q Consensus 227 ~i~v~d~~~~~~-----~~~~~~~~~~~i~~~~~s~-~~~~l~~~~d~~~~i 272 (379)
.+.+||+.+... .+... ..++.|+.+.|++ .+..++.++++.+.+
T Consensus 311 qaliWDl~q~~~~~~~dPilay-~a~~EVNqi~Ws~~~~Dwiai~~~kklei 361 (364)
T KOG0290|consen 311 QALIWDLQQMPRENGEDPILAY-TAGGEVNQIQWSSSQPDWIAICFGKKLEI 361 (364)
T ss_pred eEEEEecccccccCCCCchhhh-hccceeeeeeecccCCCEEEEEecCeeeE
Confidence 999999876532 11111 2467899999997 577898887776554
No 166
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.90 E-value=2.4e-21 Score=154.81 Aligned_cols=254 Identities=20% Similarity=0.268 Sum_probs=183.9
Q ss_pred cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEec--------------CCceEEEEEeccCCCceEEEEEcCCCCEE
Q 016982 4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLI--------------QEKWEKLHVLQKHDQIVSGIDWSVRSNRI 69 (379)
Q Consensus 4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~--------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 69 (379)
..|.+|...|+++.|+|+|.+||+|+.+|.|.+|... ...+.....+.+|...|..++|+|+++++
T Consensus 59 s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l 138 (434)
T KOG1009|consen 59 SSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFL 138 (434)
T ss_pred ecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCcee
Confidence 4577899999999999999999999999999999877 22367778899999999999999999999
Q ss_pred EEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEE--EE--------
Q 016982 70 VTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSK--LI-------- 139 (379)
Q Consensus 70 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~--~~-------- 139 (379)
++++.|..+++||+..++....+ ..|...+..++|.|-++++++-+.|...+.+.+.......... .+
T Consensus 139 ~s~s~dns~~l~Dv~~G~l~~~~--~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~ 216 (434)
T KOG1009|consen 139 VSGSVDNSVRLWDVHAGQLLAIL--DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNER 216 (434)
T ss_pred eeeeccceEEEEEeccceeEeec--cccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCC
Confidence 99999999999999999866655 6799999999999999999999988877776665543211111 00
Q ss_pred -----eecC----CcCEEEEEEcCCCcEEEEeeC----CCe-----EEEEeccccccccccccCCCccCCcccceEEEee
Q 016982 140 -----RKRH----DSSVTSVAWHPNNVFLATTST----DGK-----CRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD 201 (379)
Q Consensus 140 -----~~~~----~~~v~~~~~~p~~~~l~~~~~----d~~-----i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (379)
+.-| ..-...++|+|+|.+|++... .+. .++|+- ....++...+.
T Consensus 217 e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsr-----------------k~l~rP~~~lp 279 (434)
T KOG1009|consen 217 EGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSR-----------------KDLKRPAARLP 279 (434)
T ss_pred CcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeecc-----------------ccccCceeecC
Confidence 0011 123456789999999887542 222 233321 01123333333
Q ss_pred cCCcceEEEEECC------------------CCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE
Q 016982 202 LSFSWAFGVKWSP------------------SGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG 263 (379)
Q Consensus 202 ~~~~~v~~~~~sp------------------~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 263 (379)
....+...+.|+| -+-.++.+ ..+.|++||.++..++...-..|-..|+.++|++||.+|+
T Consensus 280 ~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiA-t~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~ 358 (434)
T KOG1009|consen 280 SPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIA-TKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLL 358 (434)
T ss_pred CCCcceEEEEeeeeEEEeccccccccccccccceEEEEe-ecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEE
Confidence 3333333344433 22334444 4678999999988777666667889999999999999887
Q ss_pred -EEeCCCeEEEEecC
Q 016982 264 -VGFDCNPMVFAADE 277 (379)
Q Consensus 264 -~~~d~~~~i~~~~~ 277 (379)
++.||-..+..+..
T Consensus 359 vSS~DGyCS~vtfe~ 373 (434)
T KOG1009|consen 359 VSSTDGFCSLVTFEP 373 (434)
T ss_pred EeccCCceEEEEEcc
Confidence 77788666655543
No 167
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.90 E-value=7.2e-22 Score=160.03 Aligned_cols=211 Identities=12% Similarity=0.077 Sum_probs=161.3
Q ss_pred EEEEEeccCCCceEEEEEcCCC--CEEEEEeCCCeEEEEeccCC--ceeeeEEeecCCCceeEEEECC-CCCEEEEEeCC
Q 016982 45 EKLHVLQKHDQIVSGIDWSVRS--NRIVTVSHDRNSYVWNQEGS--EWVPTLVILRLNRAALCVQWSP-KENKFAVGSGA 119 (379)
Q Consensus 45 ~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~vw~~~~~--~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d 119 (379)
.......-+..+|++++|+|.. +.+++|+..|+|-+||+.+. .....+....|.++|.++.|+| +...+++.+.|
T Consensus 177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD 256 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYD 256 (498)
T ss_pred eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccC
Confidence 3445556688999999999976 47788889999999999532 2233445577999999999999 55789999999
Q ss_pred CeEEEEEeecCCceeEEEEEee--cCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceE
Q 016982 120 KTVCICYYEQENNWWVSKLIRK--RHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQI 197 (379)
Q Consensus 120 ~~v~i~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (379)
|+|++-|++.... +.+.. .-...+..+.|+.+...++.+..=|...+||++ ..+...
T Consensus 257 GtiR~~D~~~~i~----e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R-----------------~~~s~~ 315 (498)
T KOG4328|consen 257 GTIRLQDFEGNIS----EEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLR-----------------TDGSEY 315 (498)
T ss_pred ceeeeeeecchhh----HHHhhcCccceeeeeccccCCCccEEEeecccceEEEEee-----------------cCCccc
Confidence 9999999987752 22212 234567788888888888888887899999972 223335
Q ss_pred EEeecCCcceEEEEECCC-CCEEEEEcCCCeEEEEECCCCCce---eeeeeeecCCeeeEEEecC-CcEEEEEeCCCeEE
Q 016982 198 LQLDLSFSWAFGVKWSPS-GNTLAYVGHNSMIYFVDDVGPSPL---AQNVAFRDLPLRDVLFVSE-KMVIGVGFDCNPMV 272 (379)
Q Consensus 198 ~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~i~v~d~~~~~~~---~~~~~~~~~~i~~~~~s~~-~~~l~~~~d~~~~i 272 (379)
..+..|...|.+++++|. -.+|++++.|++++|||++.-... .-....|...|.+..|||+ |.++.++.|+.|+|
T Consensus 316 ~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv 395 (498)
T KOG4328|consen 316 ENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRV 395 (498)
T ss_pred hhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEE
Confidence 556677889999999994 567899999999999998764211 1233358889999999996 56666899999999
Q ss_pred EEec
Q 016982 273 FAAD 276 (379)
Q Consensus 273 ~~~~ 276 (379)
|+..
T Consensus 396 ~dss 399 (498)
T KOG4328|consen 396 FDSS 399 (498)
T ss_pred eecc
Confidence 9864
No 168
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=3.9e-23 Score=184.99 Aligned_cols=288 Identities=14% Similarity=0.191 Sum_probs=206.5
Q ss_pred eEEEeCCCCc-EEEEEe----------cCCeEEEEEecCC--c--eEEEEEeccCCCceEEEEEcCCCCE----EEEEeC
Q 016982 14 TCHAWSPDHA-MVAFCP----------NNNEVHIYKLIQE--K--WEKLHVLQKHDQIVSGIDWSVRSNR----IVTVSH 74 (379)
Q Consensus 14 ~~~~~s~~~~-~l~~~~----------~dg~i~i~~~~~~--~--~~~~~~~~~~~~~v~~~~~~~~~~~----l~~~~~ 74 (379)
-.++|+|++. ++|+|. .+.++-||.+... . .+.+..+. -....+.++|.+.+.. |+.|..
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~e 88 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLE 88 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeecccc
Confidence 3478999886 556552 2455666666432 1 12333333 2457889999988755 888899
Q ss_pred CCeEEEEeccCC----ceeeeEEeecCCCceeEEEECCC-CCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEE
Q 016982 75 DRNSYVWNQEGS----EWVPTLVILRLNRAALCVQWSPK-ENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTS 149 (379)
Q Consensus 75 d~~i~vw~~~~~----~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~ 149 (379)
||.|.+||...- +.........|.+.|..+.|++. +++||+|+.||.|.|||++..+.. ...-.....+.|.+
T Consensus 89 dG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP--~~~~~~~~~~eI~~ 166 (1049)
T KOG0307|consen 89 DGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETP--FTPGSQAPPSEIKC 166 (1049)
T ss_pred CCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCC--CCCCCCCCcccceE
Confidence 999999997652 21122233569999999999995 559999999999999999875421 11101235678999
Q ss_pred EEEcCCC-cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCc--ceEEEEECCCC-CEEEEEcCC
Q 016982 150 VAWHPNN-VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFS--WAFGVKWSPSG-NTLAYVGHN 225 (379)
Q Consensus 150 ~~~~p~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~sp~~-~~l~~~~~d 225 (379)
++|+..- ..|++++.+|.+.|||+ +..+++..+..+.. .+..++|+|+. ..|++++.|
T Consensus 167 lsWNrkvqhILAS~s~sg~~~iWDl------------------r~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~d 228 (1049)
T KOG0307|consen 167 LSWNRKVSHILASGSPSGRAVIWDL------------------RKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGD 228 (1049)
T ss_pred eccchhhhHHhhccCCCCCceeccc------------------cCCCcccccccCCCccceeeeeeCCCCceeeeeecCC
Confidence 9998754 67889999999999998 44455655544433 47789999975 456666654
Q ss_pred C---eEEEEECCCCCceeeeeeeecCCeeeEEEecCC-cEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccC
Q 016982 226 S---MIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEK-MVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYG 300 (379)
Q Consensus 226 ~---~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (379)
. .|.+||++......+.+++|...|.++.|++.+ ++|+ ++.|+.+.+|+.+... ++.
T Consensus 229 d~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE---vl~--------------- 290 (1049)
T KOG0307|consen 229 DSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE---VLG--------------- 290 (1049)
T ss_pred CCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCce---Eee---------------
Confidence 3 699999998777778889999999999999965 5555 8899999999977642 221
Q ss_pred CCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCcc
Q 016982 301 SQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQE 372 (379)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~ 372 (379)
.+....+.+..+.|.+.+. .+|+.++-||.|-|+.+....
T Consensus 291 ----------------------------~~p~~~nW~fdv~w~pr~P----~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 291 ----------------------------ELPAQGNWCFDVQWCPRNP----SVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ----------------------------ecCCCCcceeeeeecCCCc----chhhhheeccceeeeeeecCC
Confidence 1123456778888544332 699999999999999997643
No 169
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=9.8e-21 Score=146.61 Aligned_cols=258 Identities=12% Similarity=0.073 Sum_probs=175.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEE
Q 016982 57 VSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVS 136 (379)
Q Consensus 57 v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~ 136 (379)
..|+.|++.|.+||+|..||.|.+||+.+....+.+ .+|..+|++++|+++|++|++++.|..+.+||+..+. +.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~l--saH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs---~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARML--SAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS---PL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhh--hccccceeEEEecCCCCEeeeecCCceeEEEeccCCC---ce
Confidence 689999999999999999999999999998755554 6799999999999999999999999999999999988 34
Q ss_pred EEEeecCCcCEEEEEEcCCC-cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEee-c-CCcceEEEEEC
Q 016982 137 KLIRKRHDSSVTSVAWHPNN-VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD-L-SFSWAFGVKWS 213 (379)
Q Consensus 137 ~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~s 213 (379)
+.+ ....+|..+.|+|.. +..++.-.+..-.+-++. .+...++..-. + -+....+..|.
T Consensus 101 ~ri--rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s----------------~~~h~~Lp~d~d~dln~sas~~~fd 162 (405)
T KOG1273|consen 101 KRI--RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFS----------------DPKHSVLPKDDDGDLNSSASHGVFD 162 (405)
T ss_pred eEE--EccCccceeeeccccCCeEEEEEecCCcEEEEec----------------CCceeeccCCCcccccccccccccc
Confidence 444 467899999999965 333333333334444431 00001100000 0 01112334689
Q ss_pred CCCCEEEEEcCCCeEEEEECCCCCceeeeeeeec-CCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccc
Q 016982 214 PSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRD-LPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERK 291 (379)
Q Consensus 214 p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~ 291 (379)
+.|+++++|...|.+.++|..+.+ ++..++... ..|.++.|+..|++++ -+.|..|+.|+..+-- +...
T Consensus 163 r~g~yIitGtsKGkllv~~a~t~e-~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~--------~~~r 233 (405)
T KOG1273|consen 163 RRGKYIITGTSKGKLLVYDAETLE-CVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDID--------DEGR 233 (405)
T ss_pred CCCCEEEEecCcceEEEEecchhe-eeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhc--------ccCc
Confidence 999999999999999999988764 555555444 6789999999999887 5678888888754210 0000
Q ss_pred cCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEee-cCceEEEEeCCC
Q 016982 292 TSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSG-LDGKIVTWDLES 370 (379)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~-~Dg~v~iW~~~~ 370 (379)
.... ....++. + + -....=.+++ |+.+| .|++.++ .-..++||.-..
T Consensus 234 ~~e~---------e~~~K~q--D--------------v--VNk~~Wk~cc-fs~dg----eYv~a~s~~aHaLYIWE~~~ 281 (405)
T KOG1273|consen 234 DGEV---------EPEHKLQ--D--------------V--VNKLQWKKCC-FSGDG----EYVCAGSARAHALYIWEKSI 281 (405)
T ss_pred cCCc---------ChhHHHH--H--------------H--Hhhhhhhhee-ecCCc----cEEEeccccceeEEEEecCC
Confidence 0000 0000110 0 0 0011123455 77776 6777665 457899999999
Q ss_pred ccccccCC
Q 016982 371 QEDLLNYH 378 (379)
Q Consensus 371 ~~~~~~~~ 378 (379)
|+.++.|+
T Consensus 282 GsLVKILh 289 (405)
T KOG1273|consen 282 GSLVKILH 289 (405)
T ss_pred cceeeeec
Confidence 99988765
No 170
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=2.5e-21 Score=162.04 Aligned_cols=249 Identities=17% Similarity=0.193 Sum_probs=181.7
Q ss_pred EEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCC--EEEEEeCCCeE
Q 016982 45 EKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKEN--KFAVGSGAKTV 122 (379)
Q Consensus 45 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v 122 (379)
.+...+.+|.+.|.++...|.|..|++|+.||+|+||.+.++.++..+.+ .+.|.+++|+|.+. .||++-.+ .+
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~---d~~I~~vaw~P~~~~~vLAvA~~~-~~ 466 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF---DSEIRSVAWNPLSDLCVLAVAVGE-CV 466 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee---cceeEEEEecCCCCceeEEEEecC-ce
Confidence 34556789999999999999999999999999999999999998888765 56899999999654 44444433 34
Q ss_pred EEEEeecCC---------------------------------ceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC---CC
Q 016982 123 CICYYEQEN---------------------------------NWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST---DG 166 (379)
Q Consensus 123 ~i~~~~~~~---------------------------------~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~---d~ 166 (379)
.|.+..-+. .....-.+...|...|..+.|+..|.||++..- ..
T Consensus 467 ~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~ 546 (733)
T KOG0650|consen 467 LIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNK 546 (733)
T ss_pred EEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcc
Confidence 443321110 000000111467889999999999999998765 34
Q ss_pred eEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeee
Q 016982 167 KCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFR 246 (379)
Q Consensus 167 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 246 (379)
.|.|+++ ........|.-..+.|.++.|+|...+|++++ ...|+|||+.... +++.+...
T Consensus 547 ~VliHQL------------------SK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqe-lvKkL~tg 606 (733)
T KOG0650|consen 547 SVLIHQL------------------SKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQE-LVKKLLTG 606 (733)
T ss_pred eEEEEec------------------ccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHH-HHHHHhcC
Confidence 6888886 22222233444466799999999999888875 5689999998743 45555555
Q ss_pred cCCeeeEEEecCCc-EEEEEeCCCeEEEEecCC-CcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccc
Q 016982 247 DLPLRDVLFVSEKM-VIGVGFDCNPMVFAADET-GIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVE 324 (379)
Q Consensus 247 ~~~i~~~~~s~~~~-~l~~~~d~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (379)
...|.+++.+|.|. +|+++.|+.+..|+++-. +.|+
T Consensus 607 ~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk------------------------------------------ 644 (733)
T KOG0650|consen 607 SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYK------------------------------------------ 644 (733)
T ss_pred CeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhH------------------------------------------
Confidence 66799999999875 566888888888776532 1122
Q ss_pred cccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeC
Q 016982 325 SSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDL 368 (379)
Q Consensus 325 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~ 368 (379)
.+.-|...|++|+++ +...+|+||+.||.+.|+--
T Consensus 645 ----~lr~H~~avr~Va~H-----~ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 645 ----TLRLHEKAVRSVAFH-----KRYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred ----Hhhhhhhhhhhhhhc-----cccceeeeecCCCcEEEEee
Confidence 335699999999965 44589999999999998743
No 171
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=5.5e-20 Score=160.73 Aligned_cols=294 Identities=16% Similarity=0.240 Sum_probs=212.1
Q ss_pred eccCcceeEEEeCCCCcEEEEEecCCeEEEEEecC--CceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982 7 HQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQ--EKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE 84 (379)
Q Consensus 7 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~ 84 (379)
.+|.-.++|.++||+++++|+|..||.|.+|.--. +.-...+.+.-|..+|++++|+++|.+|++|+..+.+.+|.+.
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 35666799999999999999999999999997544 2234556777899999999999999999999999999999999
Q ss_pred CCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEE-------eecCCcCEEEEEEcCCCc
Q 016982 85 GSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLI-------RKRHDSSVTSVAWHPNNV 157 (379)
Q Consensus 85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-------~~~~~~~v~~~~~~p~~~ 157 (379)
+++ +.+ +..-.++|..+.++||+...+....|+.|.+..............+ +....+-.+.++++|.-+
T Consensus 282 T~~--kqf-LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~ 358 (792)
T KOG1963|consen 282 TGK--KQF-LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN 358 (792)
T ss_pred CCC--ccc-ccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC
Confidence 987 332 2456789999999999999999999999999765332210001111 122345667889999778
Q ss_pred EEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEee-----------cCCcceEEEEECCCCCEEEEEc---
Q 016982 158 FLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD-----------LSFSWAFGVKWSPSGNTLAYVG--- 223 (379)
Q Consensus 158 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~v~~~~~sp~~~~l~~~~--- 223 (379)
.++..+..|.|.+||+. +...+..+. .+...++.++.+..|.++++.-
T Consensus 359 ~~vln~~~g~vQ~ydl~------------------td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~ 420 (792)
T KOG1963|consen 359 SLVLNGHPGHVQFYDLY------------------TDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARI 420 (792)
T ss_pred ceeecCCCceEEEEecc------------------ccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeee
Confidence 88889999999999973 222223221 1123578888888899998863
Q ss_pred -----CC--CeEEEEECCCCCc---ee-eeeeeecCCeeeEEEecC--C-cEEEEEeCCCeEEEEecCC-------CcEE
Q 016982 224 -----HN--SMIYFVDDVGPSP---LA-QNVAFRDLPLRDVLFVSE--K-MVIGVGFDCNPMVFAADET-------GIWT 282 (379)
Q Consensus 224 -----~d--~~i~v~d~~~~~~---~~-~~~~~~~~~i~~~~~s~~--~-~~l~~~~d~~~~i~~~~~~-------~~~~ 282 (379)
.| -.+++|-.....+ +. .....|+..+...++.+. . +.+.++.|+.+++|..... ..|.
T Consensus 421 d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~ 500 (792)
T KOG1963|consen 421 DKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWT 500 (792)
T ss_pred hhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceE
Confidence 23 3588897554432 11 222356666666666542 2 4566889999999987432 1233
Q ss_pred EEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCce
Q 016982 283 FIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGK 362 (379)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~ 362 (379)
.... -.-|..+++..+ |+.|| -++++|.|++
T Consensus 501 c~~i-------------------------------------------~sy~k~~i~a~~-fs~dG-----slla~s~~~~ 531 (792)
T KOG1963|consen 501 CKAI-------------------------------------------GSYHKTPITALC-FSQDG-----SLLAVSFDDT 531 (792)
T ss_pred Eeee-------------------------------------------eccccCcccchh-hcCCC-----cEEEEecCCE
Confidence 3210 012788899999 88887 6788899999
Q ss_pred EEEEeCCC
Q 016982 363 IVTWDLES 370 (379)
Q Consensus 363 v~iW~~~~ 370 (379)
|.+||..+
T Consensus 532 Itiwd~~~ 539 (792)
T KOG1963|consen 532 ITIWDYDT 539 (792)
T ss_pred EEEecCCC
Confidence 99999988
No 172
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.89 E-value=1.1e-18 Score=154.89 Aligned_cols=293 Identities=18% Similarity=0.271 Sum_probs=219.8
Q ss_pred ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCC-CceEEEEE-cCCCC-EEEEEeC-CCeEEE
Q 016982 5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHD-QIVSGIDW-SVRSN-RIVTVSH-DRNSYV 80 (379)
Q Consensus 5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~-~~v~~~~~-~~~~~-~l~~~~~-d~~i~v 80 (379)
.+..|...+.++.+.+.+..++.++.|+.+.+|+..... .....+..+. ..+..+.+ ++++. .++..+. |+.+.+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 138 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE-KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL 138 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc-eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEE
Confidence 356789999999999999999999999999999998862 2555666543 36777777 78887 5555444 899999
Q ss_pred EeccC-CceeeeEEeecCCCceeEEEECCCCCEEEEEeC-CCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCc-
Q 016982 81 WNQEG-SEWVPTLVILRLNRAALCVQWSPKENKFAVGSG-AKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNV- 157 (379)
Q Consensus 81 w~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~- 157 (379)
|+... ..... ....|...+..++|+|++..+++++. |+.+++|+..... ....+ ..|...+.+++|+|++.
T Consensus 139 ~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~v~~~~~~~~~~~ 212 (466)
T COG2319 139 WDLSTPGKLIR--TLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK---PLSTL-AGHTDPVSSLAFSPDGGL 212 (466)
T ss_pred EEecCCCeEEE--EEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc---eEEee-ccCCCceEEEEEcCCcce
Confidence 99987 44333 34678899999999999998888886 9999999998754 34555 66899999999999997
Q ss_pred EEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEE-EeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Q 016982 158 FLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQIL-QLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGP 236 (379)
Q Consensus 158 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~ 236 (379)
.+++++.|+.+++||. ..+..+. .+..|.... ...|+|++.++++++.|+.+++|++...
T Consensus 213 ~~~~~~~d~~i~~wd~------------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 273 (466)
T COG2319 213 LIASGSSDGTIRLWDL------------------STGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSS 273 (466)
T ss_pred EEEEecCCCcEEEEEC------------------CCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCC
Confidence 5555589999999986 4455555 577776664 3389999988999999999999999876
Q ss_pred CceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeecccc
Q 016982 237 SPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSK 315 (379)
Q Consensus 237 ~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (379)
......+..|...+.++.|.|++..++ ++.|+.+.+|+...........
T Consensus 274 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~------------------------------ 323 (466)
T COG2319 274 SSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT------------------------------ 323 (466)
T ss_pred CcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee------------------------------
Confidence 653344456788999999999776665 5666677888544332111110
Q ss_pred ccCcccccccccccccccccceeeeeeecccCCcccceEEEe-ecCceEEEEeCCCcc
Q 016982 316 YGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTS-GLDGKIVTWDLESQE 372 (379)
Q Consensus 316 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~-~~Dg~v~iW~~~~~~ 372 (379)
..+|...|..+.+ .+++ ..++.+ ..|+.+++|++....
T Consensus 324 --------------~~~~~~~~~~~~~-~~~~----~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 324 --------------LKGHEGPVSSLSF-SPDG----SLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred --------------ecccCCceEEEEE-CCCC----CEEEEeecCCCcEEeeecCCCc
Confidence 0257777888885 4331 345555 788999999998754
No 173
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.88 E-value=6.2e-21 Score=151.95 Aligned_cols=232 Identities=13% Similarity=0.197 Sum_probs=174.6
Q ss_pred ccceeccCcceeEEEeCC-CCcEEEEEecCCeEEEEEecCCc-----eEEEEEeccCCCceEEEEEcCCC-CEEEEEeCC
Q 016982 3 AIAVHQFAQCITCHAWSP-DHAMVAFCPNNNEVHIYKLIQEK-----WEKLHVLQKHDQIVSGIDWSVRS-NRIVTVSHD 75 (379)
Q Consensus 3 ~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d 75 (379)
.+.+-+|.++|..++|+| +...||+|+.|.+|.||++..+. .+++..|.+|...|.-++|+|.. +.|++++.|
T Consensus 74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D 153 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD 153 (472)
T ss_pred CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence 456789999999999999 56789999999999999987542 25678899999999999999976 788999999
Q ss_pred CeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCc-CEEEEEEcC
Q 016982 76 RNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDS-SVTSVAWHP 154 (379)
Q Consensus 76 ~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~p 154 (379)
.+|.+||+.+++.... ..|...|++++|+.+|.+|++.+.|+.|+|||.+++.. ...- ..|.+ .-..+.|-.
T Consensus 154 n~v~iWnv~tgeali~---l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~---v~e~-~~heG~k~~Raifl~ 226 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALIT---LDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTV---VSEG-VAHEGAKPARAIFLA 226 (472)
T ss_pred ceEEEEeccCCceeee---cCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcE---eeec-ccccCCCcceeEEec
Confidence 9999999999984333 34999999999999999999999999999999999873 3332 35543 334556777
Q ss_pred CCcEEEEee---CCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEc-CCCeEEE
Q 016982 155 NNVFLATTS---TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVG-HNSMIYF 230 (379)
Q Consensus 155 ~~~~l~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~v 230 (379)
++..+.||- .+..+-+||.. . ....-...++.. ...|.-.-|.||.+.+..++ .|+.|+.
T Consensus 227 ~g~i~tTGfsr~seRq~aLwdp~----n-----------l~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRY 290 (472)
T KOG0303|consen 227 SGKIFTTGFSRMSERQIALWDPN----N-----------LEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRY 290 (472)
T ss_pred cCceeeeccccccccceeccCcc----c-----------ccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEE
Confidence 888555553 37789999862 0 111222344444 34577777899888776554 7999999
Q ss_pred EECCCCCceeeeeee--ecCCeeeEEEec
Q 016982 231 VDDVGPSPLAQNVAF--RDLPLRDVLFVS 257 (379)
Q Consensus 231 ~d~~~~~~~~~~~~~--~~~~i~~~~~s~ 257 (379)
|.+....+.+..+.. ...+-..+.|-|
T Consensus 291 yEit~d~P~~hyln~f~S~epQRG~g~mP 319 (472)
T KOG0303|consen 291 FEITNEPPFVHYLNTFSSKEPQRGMGFMP 319 (472)
T ss_pred EEecCCCceeEEecccccCCccccccccc
Confidence 998887655444432 133445566655
No 174
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.88 E-value=1.4e-18 Score=147.87 Aligned_cols=237 Identities=12% Similarity=0.053 Sum_probs=151.7
Q ss_pred EEEecCCeEEEEEecC-CceEEEEEeccCCCceEEEEEcCCCCEEEEEe-CCCeEEEEeccC-CceeeeEEeecCCCcee
Q 016982 26 AFCPNNNEVHIYKLIQ-EKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVS-HDRNSYVWNQEG-SEWVPTLVILRLNRAAL 102 (379)
Q Consensus 26 ~~~~~dg~i~i~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~vw~~~~-~~~~~~~~~~~~~~~v~ 102 (379)
++...++.|.+|++.+ ++.+.+..+.. .+....++++|++++|++++ .++.|.+|++.. +....... ........
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~-~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~-~~~~~~p~ 83 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVDV-PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAE-SPLPGSPT 83 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEec-CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeee-ecCCCCce
Confidence 3446789999999964 44556666653 35567899999999887664 578899999973 33222111 22334567
Q ss_pred EEEECCCCCEEEEEeC-CCeEEEEEeecCCce-eEEEEEeecCCcCEEEEEEcCCCcEEEEee-CCCeEEEEeccccccc
Q 016982 103 CVQWSPKENKFAVGSG-AKTVCICYYEQENNW-WVSKLIRKRHDSSVTSVAWHPNNVFLATTS-TDGKCRVFSTFIKGVD 179 (379)
Q Consensus 103 ~~~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~d~~i~v~d~~~~~~~ 179 (379)
.++++|+++++++++. ++.|.+|+++..... .....+ .+......++++|+++++++++ .++.|.+||+.....
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~--~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~- 160 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII--EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGH- 160 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec--cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCc-
Confidence 8999999998888775 889999999753211 111222 2334467788999998886554 569999999731000
Q ss_pred cccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcC-CCeEEEEECCCC--C-ceeeeeeeec------CC
Q 016982 180 IKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGH-NSMIYFVDDVGP--S-PLAQNVAFRD------LP 249 (379)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~i~v~d~~~~--~-~~~~~~~~~~------~~ 249 (379)
.. ........... ......++|+|+|++|+++.. ++.|.+||+... . ..++.+.... ..
T Consensus 161 l~----------~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 229 (330)
T PRK11028 161 LV----------AQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRW 229 (330)
T ss_pred cc----------ccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCcc
Confidence 00 00000011111 233578999999999988765 899999998742 1 1222222111 11
Q ss_pred eeeEEEecCCcEEEEE--eCCCeEEEEecCC
Q 016982 250 LRDVLFVSEKMVIGVG--FDCNPMVFAADET 278 (379)
Q Consensus 250 i~~~~~s~~~~~l~~~--~d~~~~i~~~~~~ 278 (379)
...+.++|+|+++.++ .++.+.+|+.+..
T Consensus 230 ~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 230 AADIHITPDGRHLYACDRTASLISVFSVSED 260 (330)
T ss_pred ceeEEECCCCCEEEEecCCCCeEEEEEEeCC
Confidence 2358899999988865 3568888887654
No 175
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.88 E-value=6.2e-21 Score=144.09 Aligned_cols=297 Identities=10% Similarity=0.121 Sum_probs=197.1
Q ss_pred cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEec-cCCCceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 016982 4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQ-KHDQIVSGIDWSVRSNRIVTVSHDRNSYVWN 82 (379)
Q Consensus 4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~ 82 (379)
+.+..|.+.|+++.|..+++ |.+|..-|.|++|++.+. .....++ .|...|+.+..-|+ ..|.+-+.|..+.+|+
T Consensus 8 fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~--r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 8 FVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTE--RDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWT 83 (323)
T ss_pred eEeccccchheehhhccchh-hhcccccceEEEEEeecC--ccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEE
Confidence 45678999999999987765 888999999999999987 4555566 56778999999887 5788899999999999
Q ss_pred ccCCceeeeEEeecCCCceeEEEECC-----CCC----EEEEEeCCC-eEEEEEeecCCceeEEEEEeecCCcCEEEEEE
Q 016982 83 QEGSEWVPTLVILRLNRAALCVQWSP-----KEN----KFAVGSGAK-TVCICYYEQENNWWVSKLIRKRHDSSVTSVAW 152 (379)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~----~l~~~~~d~-~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 152 (379)
+.....+... .-.+.++.|.+ .++ .++.-+..- .+++-|........+...-..+..+.+.+..+
T Consensus 84 ia~s~~i~i~-----Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~ 158 (323)
T KOG0322|consen 84 IAYSAFISIH-----SIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDK 158 (323)
T ss_pred ccCcceEEEe-----eeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeec
Confidence 9886543332 23344444433 221 122211100 01111111111000000001234566777775
Q ss_pred cCC-C--cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEE
Q 016982 153 HPN-N--VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIY 229 (379)
Q Consensus 153 ~p~-~--~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~ 229 (379)
.-+ + -++++|.++|.+.+||+......+..+ ...+.......|..+|.++.|.+.-..=++++.+..+.
T Consensus 159 ~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~--------~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~ 230 (323)
T KOG0322|consen 159 DHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLP--------QSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLV 230 (323)
T ss_pred cccccceEEEEEeccCCeEEEEEccCCceeeccc--------cccccccchhhccCcceeeeechhhcCCcCCCccccce
Confidence 432 2 356678889999999985432111111 22344445567889999999998665567788888899
Q ss_pred EEECCCCC---ceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCccc
Q 016982 230 FVDDVGPS---PLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSE 305 (379)
Q Consensus 230 v~d~~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (379)
.|.++... +...+....+-.+..+..-||++++| +|.|+.+++|+ |+....+
T Consensus 231 ~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVys------wrtl~pL------------------ 286 (323)
T KOG0322|consen 231 MYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYS------WRTLNPL------------------ 286 (323)
T ss_pred eeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEE------eccCCch------------------
Confidence 99876542 12223333355688999999999999 89999999998 4432211
Q ss_pred ccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeC
Q 016982 306 AFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDL 368 (379)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~ 368 (379)
+++.-|.+.|++++ |+++. .++|.+|.|++|.+|++
T Consensus 287 ----------------------AVLkyHsagvn~vA-fspd~----~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 287 ----------------------AVLKYHSAGVNAVA-FSPDC----ELMAAASKDARISLWKL 322 (323)
T ss_pred ----------------------hhhhhhhcceeEEE-eCCCC----chhhhccCCceEEeeec
Confidence 14466999999999 77665 79999999999999997
No 176
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.87 E-value=1e-18 Score=138.37 Aligned_cols=235 Identities=13% Similarity=0.154 Sum_probs=173.9
Q ss_pred CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC--CeEEEEeccCCc
Q 016982 10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD--RNSYVWNQEGSE 87 (379)
Q Consensus 10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~vw~~~~~~ 87 (379)
...+..+.|+.+...|..|+.|| .++|+.+.- ............|-.+-|+.. ++|..+.+ +.+++.+.+.+.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~--~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPF--EKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCch--HHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCc
Confidence 34677788999999999999886 577777653 121111222335666777743 55555443 459999999888
Q ss_pred eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEe--ecCCcCEEEEEEcCCCcEEEEee--
Q 016982 88 WVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIR--KRHDSSVTSVAWHPNNVFLATTS-- 163 (379)
Q Consensus 88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~l~~~~-- 163 (379)
.++.+. ....|.++.++. +.|+++-.+ .|+|||++..+ +...+. ..+...+.++++++.+.+++.-+
T Consensus 80 ~ICe~~---fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~Mk---lLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~ 150 (391)
T KOG2110|consen 80 TICEIF---FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMK---LLHTIETTPPNPKGLCALSPNNANCYLAYPGST 150 (391)
T ss_pred eEEEEe---cCCceEEEEEcc--ceEEEEEcc-cEEEEecccce---eehhhhccCCCccceEeeccCCCCceEEecCCC
Confidence 666664 367899999974 466666654 49999999877 344432 34566677777777778888643
Q ss_pred CCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCe-EEEEECCCCCceeee
Q 016982 164 TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSM-IYFVDDVGPSPLAQN 242 (379)
Q Consensus 164 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~-i~v~d~~~~~~~~~~ 242 (379)
..|.|.+||+ ..-+++..+..|.+.+.+++|+|+|.+||+++..|+ |+|+.+.++..+ ..
T Consensus 151 t~GdV~l~d~------------------~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl-~e 211 (391)
T KOG2110|consen 151 TSGDVVLFDT------------------INLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKL-YE 211 (391)
T ss_pred CCceEEEEEc------------------ccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEe-ee
Confidence 4789999997 667888899999999999999999999999999886 789999888754 44
Q ss_pred eeee--cCCeeeEEEecCCcEEE-EEeCCCeEEEEecC
Q 016982 243 VAFR--DLPLRDVLFVSEKMVIG-VGFDCNPMVFAADE 277 (379)
Q Consensus 243 ~~~~--~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~ 277 (379)
+.-. ...|.+++|+|++++|+ ++..++|++|.++.
T Consensus 212 FRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 212 FRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred eeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 4321 34589999999999998 56777999998765
No 177
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.87 E-value=1.5e-19 Score=138.50 Aligned_cols=250 Identities=17% Similarity=0.196 Sum_probs=181.3
Q ss_pred CcceeEEEeCC---CCcEEEEEec----CCeEEEEEecCCceEEEEEe-ccCCCceEEEEEcCCC-----CEEEEEeCCC
Q 016982 10 AQCITCHAWSP---DHAMVAFCPN----NNEVHIYKLIQEKWEKLHVL-QKHDQIVSGIDWSVRS-----NRIVTVSHDR 76 (379)
Q Consensus 10 ~~~i~~~~~s~---~~~~l~~~~~----dg~i~i~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~-----~~l~~~~~d~ 76 (379)
.-+++++.|+. ...+||.|+. .+.|.|..+.....+.+..- ..|.-+++.+-|.|+. ++||+++ .
T Consensus 44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D 121 (364)
T KOG0290|consen 44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--D 121 (364)
T ss_pred CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--C
Confidence 45788999984 3357888864 56788877764433332221 3588899999999986 3566544 4
Q ss_pred eEEEEeccCC--ceeeeE-----EeecCCCceeEEEECC-CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEE
Q 016982 77 NSYVWNQEGS--EWVPTL-----VILRLNRAALCVQWSP-KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVT 148 (379)
Q Consensus 77 ~i~vw~~~~~--~~~~~~-----~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~ 148 (379)
.+++|.+... +..... ....+..++++..|+. +.++|.+++-|-+..|||++++....+...+ ..|...|.
T Consensus 122 ~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQL-IAHDKEV~ 200 (364)
T KOG0290|consen 122 FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQL-IAHDKEVY 200 (364)
T ss_pred eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEE-EecCccee
Confidence 7999998742 211111 1123567899999998 7789999999999999999997432234444 69999999
Q ss_pred EEEEcCCC-cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECC-CCCEEEEEcC-C
Q 016982 149 SVAWHPNN-VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSP-SGNTLAYVGH-N 225 (379)
Q Consensus 149 ~~~~~p~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~-d 225 (379)
.++|...+ +.|++.+.||.+++||++.. .....+++-.....+...++|++ |-+++|+-.. .
T Consensus 201 DIaf~~~s~~~FASvgaDGSvRmFDLR~l---------------eHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS 265 (364)
T KOG0290|consen 201 DIAFLKGSRDVFASVGADGSVRMFDLRSL---------------EHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDS 265 (364)
T ss_pred EEEeccCccceEEEecCCCcEEEEEeccc---------------ccceEEecCCCCCCcceeeccCcCCchHHhhhhcCC
Confidence 99999866 78999999999999998311 11222333223245788899998 5667776554 4
Q ss_pred CeEEEEECCCCCceeeeeeeecCCeeeEEEecCC-cEEE-EEeCCCeEEEEecC
Q 016982 226 SMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEK-MVIG-VGFDCNPMVFAADE 277 (379)
Q Consensus 226 ~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~-~~~d~~~~i~~~~~ 277 (379)
..|.+.|++.+...+..+..|.+.|+.++|.|.. ..|+ +|.|..+.+|++..
T Consensus 266 ~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 266 NKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred ceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 6799999999988889999999999999999954 4555 77777888888654
No 178
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.87 E-value=4.9e-18 Score=144.53 Aligned_cols=261 Identities=12% Similarity=0.093 Sum_probs=169.3
Q ss_pred cCcceeEEEeCCCCcEEEEEe-cCCeEEEEEecC-CceEEEEEeccCCCceEEEEEcCCCCEEEEEe-CCCeEEEEeccC
Q 016982 9 FAQCITCHAWSPDHAMVAFCP-NNNEVHIYKLIQ-EKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVS-HDRNSYVWNQEG 85 (379)
Q Consensus 9 ~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~vw~~~~ 85 (379)
+.+....++++|++++|++++ .++.|.+|++.. +.+....... .......++|+|++++|++++ .++.|.+|++++
T Consensus 33 ~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~ 111 (330)
T PRK11028 33 VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDK 111 (330)
T ss_pred cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECC
Confidence 346778899999999887664 478999999973 3334444333 233457899999999888776 478899999974
Q ss_pred Cc-eeeeEEeecCCCceeEEEECCCCCEEEEEe-CCCeEEEEEeecCCceeE--EEEEeecCCcCEEEEEEcCCCcEEEE
Q 016982 86 SE-WVPTLVILRLNRAALCVQWSPKENKFAVGS-GAKTVCICYYEQENNWWV--SKLIRKRHDSSVTSVAWHPNNVFLAT 161 (379)
Q Consensus 86 ~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~p~~~~l~~ 161 (379)
.. .........+...+..++++|+++++++++ .++.|.+||++....... ..............+.|+|+++++++
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv 191 (330)
T PRK11028 112 DGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYC 191 (330)
T ss_pred CCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEE
Confidence 32 111221122334567889999999886655 469999999986431100 00110112344578999999999988
Q ss_pred eeC-CCeEEEEeccccccccccccCCCccCCcccceEEEeecC------CcceEEEEECCCCCEEEEEc-CCCeEEEEEC
Q 016982 162 TST-DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS------FSWAFGVKWSPSGNTLAYVG-HNSMIYFVDD 233 (379)
Q Consensus 162 ~~~-d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~sp~~~~l~~~~-~d~~i~v~d~ 233 (379)
+.. ++.|.+|++.... ...+.+..+... ......+.++|++++|+++. .++.|.+|++
T Consensus 192 ~~~~~~~v~v~~~~~~~--------------~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i 257 (330)
T PRK11028 192 VNELNSSVDVWQLKDPH--------------GEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSV 257 (330)
T ss_pred EecCCCEEEEEEEeCCC--------------CCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEE
Confidence 776 8999999973100 011222222211 12234689999999998885 4789999998
Q ss_pred CCCCcee---eeeeeecCCeeeEEEecCCcEEEEE--eCCCeEEEEecC-CCcEEEEE
Q 016982 234 VGPSPLA---QNVAFRDLPLRDVLFVSEKMVIGVG--FDCNPMVFAADE-TGIWTFIK 285 (379)
Q Consensus 234 ~~~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~--~d~~~~i~~~~~-~~~~~~~~ 285 (379)
....... ..... ......+.|+|+|++|+++ .++.+.+|..+. .+.+....
T Consensus 258 ~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~ 314 (330)
T PRK11028 258 SEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELG 314 (330)
T ss_pred eCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEcc
Confidence 6543221 22221 2345689999999988844 377899998763 44454443
No 179
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=1.7e-20 Score=156.05 Aligned_cols=214 Identities=15% Similarity=0.199 Sum_probs=175.7
Q ss_pred ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecC------CceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeE
Q 016982 5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQ------EKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNS 78 (379)
Q Consensus 5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 78 (379)
++..|.+.|+.++|.|....|++++.||.+++|+++. ...+++.++.+|.++|.|+++.++++.+++|+.||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 5677899999999999999999999999999999932 2468899999999999999999999999999999999
Q ss_pred EEEeccCCc--------eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCc--ee--------E-----
Q 016982 79 YVWNQEGSE--------WVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENN--WW--------V----- 135 (379)
Q Consensus 79 ~vw~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~--~~--------~----- 135 (379)
+.|++.... ....-.+.+|...++.+++|+....|++++.||++++|+...... .. +
T Consensus 369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ 448 (577)
T KOG0642|consen 369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRT 448 (577)
T ss_pred eeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeec
Confidence 999765221 011223468999999999999999999999999999998765432 00 0
Q ss_pred --------------------------EEEEe------ecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccc
Q 016982 136 --------------------------SKLIR------KRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEK 183 (379)
Q Consensus 136 --------------------------~~~~~------~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 183 (379)
...+. ......+..+.++|...+.+++..|+.|+++|.
T Consensus 449 ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn---------- 518 (577)
T KOG0642|consen 449 SSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDN---------- 518 (577)
T ss_pred cchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccc----------
Confidence 00000 001124567788888889999999999999995
Q ss_pred cCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Q 016982 184 KEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGP 236 (379)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~ 236 (379)
.++..+.....|...++++++.|+|-+|++++.|+.+++|.+...
T Consensus 519 --------~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 519 --------KTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred --------cccccchheeeccceecceeecCCCceEEeecCCceeehhhccch
Confidence 788999999999999999999999999999999999999987654
No 180
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.86 E-value=1.9e-21 Score=168.66 Aligned_cols=241 Identities=16% Similarity=0.159 Sum_probs=189.0
Q ss_pred ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982 5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE 84 (379)
Q Consensus 5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~ 84 (379)
.+.+|..+|+|+.|...|.++++|+.|..|+||..++. .++....||.+.|+.++.+.+..++++++.|..|++|.+.
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~--~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA--RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccch--hhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence 46789999999999999999999999999999998887 7899999999999999999988899999999999999999
Q ss_pred CCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC
Q 016982 85 GSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST 164 (379)
Q Consensus 85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 164 (379)
.+.++..+ .+|.+.|++++|+|-. +.+.||++++||.+-.......+.+......-+..+.|...+..+++++.
T Consensus 263 ~~~pvsvL--rghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~ 336 (1113)
T KOG0644|consen 263 DGAPVSVL--RGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSR 336 (1113)
T ss_pred CCchHHHH--hccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccC
Confidence 99876666 7899999999999964 67789999999998332111112221233455677778778888999999
Q ss_pred CCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCC-CCEEEEEcCCCeEEEEECCCCCceeeee
Q 016982 165 DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPS-GNTLAYVGHNSMIYFVDDVGPSPLAQNV 243 (379)
Q Consensus 165 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 243 (379)
|+.-..|... . +..+...+.-+.++.+ ..+.+++-.+-.+++|++.++. +...+
T Consensus 337 d~ea~n~e~~--------------------~----l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~-l~H~l 391 (1113)
T KOG0644|consen 337 DGEARNHEFE--------------------Q----LAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQ-LLHNL 391 (1113)
T ss_pred Ccccccchhh--------------------H----hhhhccceEEEeccccccccceeeeeeeEeeeeecccch-hhhhh
Confidence 9998888641 0 0011111222222222 2466777788899999998876 44777
Q ss_pred eeecCCeeeEEEecCCcEEE--EEeCCCeEEEEecCC
Q 016982 244 AFRDLPLRDVLFVSEKMVIG--VGFDCNPMVFAADET 278 (379)
Q Consensus 244 ~~~~~~i~~~~~s~~~~~l~--~~~d~~~~i~~~~~~ 278 (379)
.+|...+..+.++|-+..++ ++.|+...||+.-.+
T Consensus 392 ~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg 428 (1113)
T KOG0644|consen 392 MGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEG 428 (1113)
T ss_pred cccccceeeeeecCCCcHhhhhccCCCceEeeecccC
Confidence 78899999999999777666 899999999986543
No 181
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.86 E-value=2.2e-20 Score=158.64 Aligned_cols=240 Identities=14% Similarity=0.162 Sum_probs=182.8
Q ss_pred cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982 4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ 83 (379)
Q Consensus 4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~ 83 (379)
.++++|.+.|+|++|+.||+++|+|+.|..|.+|+.+-. -+-. ..|.+.|.|+.|+|-...|++++-+ ..-+|..
T Consensus 47 qtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE---G~Lk-YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~ 121 (1081)
T KOG1538|consen 47 QPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE---GILK-YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSP 121 (1081)
T ss_pred cccccccceEEEEEEccCCceeccCCCceeEEEeccccc---ceee-eccCCeeeEeecCchHHHhhhcchh-hccccCh
Confidence 357899999999999999999999999999999986532 2222 3589999999999999999998864 4778987
Q ss_pred cCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCC-----cE
Q 016982 84 EGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNN-----VF 158 (379)
Q Consensus 84 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-----~~ 158 (379)
....... ......+.+++|..||++++.|-.+|+|.+-+-...+.. ..... .+...+|.+++|+|.. ..
T Consensus 122 ~qK~V~K----~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~-~I~Rp-gg~Nspiwsi~~~p~sg~G~~di 195 (1081)
T KOG1538|consen 122 EQKSVSK----HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKV-KIERP-GGSNSPIWSICWNPSSGEGRNDI 195 (1081)
T ss_pred hhhhHHh----hhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcce-EEeCC-CCCCCCceEEEecCCCCCCccce
Confidence 7664221 234578899999999999999999999998654333311 11111 4567899999999963 57
Q ss_pred EEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCc
Q 016982 159 LATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSP 238 (379)
Q Consensus 159 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~ 238 (379)
+++.....++.+|.+ +++.+..-..-.-...++.+-|+|.+++.|+.|+.+++|- +.+-
T Consensus 196 ~aV~DW~qTLSFy~L-------------------sG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~Gv- 254 (1081)
T KOG1538|consen 196 LAVADWGQTLSFYQL-------------------SGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGV- 254 (1081)
T ss_pred EEEEeccceeEEEEe-------------------cceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCe-
Confidence 778888888888875 2444432222233457899999999999999999999996 3333
Q ss_pred eeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEe
Q 016982 239 LAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAA 275 (379)
Q Consensus 239 ~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~ 275 (379)
.+-++...+..|+.++..|+++.++ ++.||++..|+.
T Consensus 255 rLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 255 RLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred EEeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 2344544678899999999999887 778999887764
No 182
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=2e-20 Score=150.44 Aligned_cols=201 Identities=15% Similarity=0.178 Sum_probs=154.5
Q ss_pred eEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEE
Q 016982 14 TCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLV 93 (379)
Q Consensus 14 ~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~ 93 (379)
.+++|+++|..|++|+.||.+++|+.... ..+.....|...|.++.|+|||++|++.+.| ..+||+.+++..+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~--~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM--LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc--hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence 78999999999999999999999997664 5666677788999999999999999999999 89999999996555554
Q ss_pred eecCCCceeEEEECCCC-----CEEEEEeCCCeEEEEEeecCCceeEEEEEe-ecCCcCEEEEEEcCCCcEEEEeeCCCe
Q 016982 94 ILRLNRAALCVQWSPKE-----NKFAVGSGAKTVCICYYEQENNWWVSKLIR-KRHDSSVTSVAWHPNNVFLATTSTDGK 167 (379)
Q Consensus 94 ~~~~~~~v~~~~~~~~~-----~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~l~~~~~d~~ 167 (379)
..........+.|+.++ ..++....-+.|+.|++..-......+..+ ......|.+++.+++|++++.|+.||.
T Consensus 225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGs 304 (398)
T KOG0771|consen 225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGS 304 (398)
T ss_pred CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCc
Confidence 34445667788888876 333333445667777664432110111110 123357999999999999999999999
Q ss_pred EEEEeccccccccccccCCCccCCcccceEE-EeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCC
Q 016982 168 CRVFSTFIKGVDIKEKKEGTSSDTKFGEQIL-QLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVG 235 (379)
Q Consensus 168 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~ 235 (379)
|.|++. ...+.++ .-+.|...|+.+.|+|+.+++++.+.+.+..+..+..
T Consensus 305 Vai~~~------------------~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 305 VAIYDA------------------KSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEEe------------------ceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999996 3334333 3367888999999999999999999999888887654
No 183
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2.1e-20 Score=152.94 Aligned_cols=304 Identities=15% Similarity=0.155 Sum_probs=216.9
Q ss_pred cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCC--CEEEEEeCCCeEEEE
Q 016982 4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRS--NRIVTVSHDRNSYVW 81 (379)
Q Consensus 4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~vw 81 (379)
..|-.|.+.|..|.|+..|..|++|+.|..|.+||...+. ..+.-..+|...|..-.|-|.. +-|++++.||.+++=
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~-~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGS-PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccC-cccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 3577899999999999999999999999999999998763 3444456788888888898854 679999999999987
Q ss_pred eccC-CceeeeEEeecCCCceeEEEECCC-CCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCc---CEEEEEEcCCC
Q 016982 82 NQEG-SEWVPTLVILRLNRAALCVQWSPK-ENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDS---SVTSVAWHPNN 156 (379)
Q Consensus 82 ~~~~-~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~p~~ 156 (379)
.+.. +.+.....+..|.++|..++.-|+ ...|.+++.|+.+.-+|++...+......- ..+.. ....++..|..
T Consensus 215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr-~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCR-EADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeee-ccCCccceeeeeEecCCCC
Confidence 7643 444445566789999999999995 457889999999999999887753332221 33333 57889999976
Q ss_pred -cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEe------ecCCcceEEEEECCCCCEEEEEcCCCeEE
Q 016982 157 -VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL------DLSFSWAFGVKWSPSGNTLAYVGHNSMIY 229 (379)
Q Consensus 157 -~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~sp~~~~l~~~~~d~~i~ 229 (379)
..+++++.|-.+++||...-..+ . ....+..+ ......|++++|+.++.-|+++-.|-.|+
T Consensus 294 t~~faVgG~dqf~RvYD~R~~~~e------~------~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IY 361 (559)
T KOG1334|consen 294 TNEFAVGGSDQFARVYDQRRIDKE------E------NNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIY 361 (559)
T ss_pred ccccccCChhhhhhhhcccchhhc------c------ccchhhhcCCccccccCcccceeEEecCCccceeeeecccceE
Confidence 58999999999999996311111 0 00111222 12234689999998777777777888899
Q ss_pred EEECCC--C---------Cceee-eeeeecC--CeeeEEE-ecCCcEEEEEeCC-CeEEEEecCCCcEEEEEEecccccC
Q 016982 230 FVDDVG--P---------SPLAQ-NVAFRDL--PLRDVLF-VSEKMVIGVGFDC-NPMVFAADETGIWTFIKFLDERKTS 293 (379)
Q Consensus 230 v~d~~~--~---------~~~~~-~~~~~~~--~i~~~~~-s~~~~~l~~~~d~-~~~i~~~~~~~~~~~~~~~~~~~~~ 293 (379)
++.-.. + .+... .+++|.. .|..+-| -|...|+++|+|+ .|.+|.-.......++
T Consensus 362 LF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~M--------- 432 (559)
T KOG1334|consen 362 LFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFM--------- 432 (559)
T ss_pred EeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHh---------
Confidence 995321 1 01222 3667743 3777765 5788999988876 6778875544322221
Q ss_pred CCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCcc
Q 016982 294 SSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQE 372 (379)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~ 372 (379)
.|...-|+|+..++.. .+|||+|-|..|+||--.+.+
T Consensus 433 -------------------------------------egDr~VVNCLEpHP~~-----PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 433 -------------------------------------EGDRHVVNCLEPHPHL-----PVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred -------------------------------------hcccceEeccCCCCCC-----chhhccCCccceeeecCCccc
Confidence 2333379999976444 699999999999999875433
No 184
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.85 E-value=2.6e-19 Score=156.88 Aligned_cols=220 Identities=14% Similarity=0.140 Sum_probs=154.1
Q ss_pred ceeccCcceeEEEeCCCCcEEEEEecC---CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEe-CCCeEEE
Q 016982 5 AVHQFAQCITCHAWSPDHAMVAFCPNN---NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVS-HDRNSYV 80 (379)
Q Consensus 5 ~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v 80 (379)
.+..|...+.+.+|||||+.|++.+.+ ..|++||+.+++.+.+..+.+|. ..++|+|||+.|+.++ .+|.+.|
T Consensus 198 ~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~---~~~~wSPDG~~La~~~~~~g~~~I 274 (429)
T PRK01742 198 IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN---GAPAFSPDGSRLAFASSKDGVLNI 274 (429)
T ss_pred EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc---CceeECCCCCEEEEEEecCCcEEE
Confidence 356677889999999999999987653 37999999887545555555543 4689999999888764 6776555
Q ss_pred E--eccCCceeeeEEeecCCCceeEEEECCCCCEEEEEe-CCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCc
Q 016982 81 W--NQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGS-GAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNV 157 (379)
Q Consensus 81 w--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 157 (379)
| |+.+++... + ..+...+....|+|||+.|+..+ .++...||+++.... ....+ .+.. ....|+|+|+
T Consensus 275 y~~d~~~~~~~~-l--t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~--~~~~l--~~~~--~~~~~SpDG~ 345 (429)
T PRK01742 275 YVMGANGGTPSQ-L--TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG--GASLV--GGRG--YSAQISADGK 345 (429)
T ss_pred EEEECCCCCeEe-e--ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC--CeEEe--cCCC--CCccCCCCCC
Confidence 4 666665322 2 34566788999999999877665 478889998876442 12222 2333 4578999999
Q ss_pred EEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECC--C
Q 016982 158 FLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDV--G 235 (379)
Q Consensus 158 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~--~ 235 (379)
+|+..+.++ +.+||+ .+++....... .....+.|+|+|++|++++.++...+|++. +
T Consensus 346 ~ia~~~~~~-i~~~Dl------------------~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~ 404 (429)
T PRK01742 346 TLVMINGDN-VVKQDL------------------TSGSTEVLSST--FLDESPSISPNGIMIIYSSTQGLGKVLQLVSAD 404 (429)
T ss_pred EEEEEcCCC-EEEEEC------------------CCCCeEEecCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence 998887765 556886 33332221111 123567899999999999988888877652 2
Q ss_pred CCceeeeeeeecCCeeeEEEecC
Q 016982 236 PSPLAQNVAFRDLPLRDVLFVSE 258 (379)
Q Consensus 236 ~~~~~~~~~~~~~~i~~~~~s~~ 258 (379)
+. ..+.+..|.+.+..++|+|-
T Consensus 405 G~-~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 405 GR-FKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CC-ceEEccCCCCCCCCcccCCC
Confidence 33 45677777788889999984
No 185
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.85 E-value=4.3e-17 Score=144.59 Aligned_cols=288 Identities=19% Similarity=0.285 Sum_probs=211.2
Q ss_pred cceeccCcceeEEEeCCCCcEEEEEec-CCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCC-EEEEEeCCCeEEEE
Q 016982 4 IAVHQFAQCITCHAWSPDHAMVAFCPN-NNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSN-RIVTVSHDRNSYVW 81 (379)
Q Consensus 4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~vw 81 (379)
..+..|...|.+++|+|++..++.++. ++.+++|+.... ..+..+.+|...|.+++|+|++. .+++++.|+.+++|
T Consensus 149 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~w 226 (466)
T COG2319 149 RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG--KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLW 226 (466)
T ss_pred EEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC--ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEE
Confidence 346778999999999999998888875 999999999875 67778888999999999999997 55555899999999
Q ss_pred eccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEE
Q 016982 82 NQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLAT 161 (379)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~ 161 (379)
|...+..... ....|.... -..|+|++..+++++.|+.+++|+...... ....+ ..|...+.++.|.|++..+++
T Consensus 227 d~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~-~~~~~~v~~~~~~~~~~~~~~ 301 (466)
T COG2319 227 DLSTGKLLRS-TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS--LLRTL-SGHSSSVLSVAFSPDGKLLAS 301 (466)
T ss_pred ECCCCcEEee-ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc--EEEEE-ecCCccEEEEEECCCCCEEEE
Confidence 8886664442 234565554 338999998899999999999999987763 12333 578899999999998888888
Q ss_pred eeCCCeEEEEeccccccccccccCCCccCCcccceEEEee--cCCcceEEEEECCCCCEEEEE-cCCCeEEEEECCCCCc
Q 016982 162 TSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD--LSFSWAFGVKWSPSGNTLAYV-GHNSMIYFVDDVGPSP 238 (379)
Q Consensus 162 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~-~~d~~i~v~d~~~~~~ 238 (379)
++.|+.+.+|+. .......... .|...+..+.|.+++..++.+ ..|+.+.+|++....
T Consensus 302 ~~~d~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~- 362 (466)
T COG2319 302 GSSDGTVRLWDL------------------ETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK- 362 (466)
T ss_pred eeCCCcEEEEEc------------------CCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc-
Confidence 888988999986 3344333333 666678999994343556555 678899999988765
Q ss_pred eeeeeeeecCCeeeEEEecCCcEEE--EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccc
Q 016982 239 LAQNVAFRDLPLRDVLFVSEKMVIG--VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKY 316 (379)
Q Consensus 239 ~~~~~~~~~~~i~~~~~s~~~~~l~--~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (379)
....... ...+..+.+.+ ...+. ...++.+.+|...........
T Consensus 363 ~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------- 408 (466)
T COG2319 363 PLKTLEG-HSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNL-------------------------------- 408 (466)
T ss_pred eeEEecC-CceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeec--------------------------------
Confidence 2222222 22278888888 53333 357778888876543211110
Q ss_pred cCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCC
Q 016982 317 GVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLES 370 (379)
Q Consensus 317 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~ 370 (379)
..+...+.... +.+++ ..+++++.++.+++|+..+
T Consensus 409 --------------~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 409 --------------DGHTSRVTSLD-FSPDG----KSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred --------------cCCCCcEEEEE-ECCCC----cEEEEecCCCcEEEEeccC
Confidence 11114566666 55554 7899999999999999876
No 186
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=3.1e-20 Score=154.55 Aligned_cols=261 Identities=16% Similarity=0.187 Sum_probs=180.0
Q ss_pred eEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccC------CceeeeEEeecCCCceeEEEECCCCCEEEEEe
Q 016982 44 WEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEG------SEWVPTLVILRLNRAALCVQWSPKENKFAVGS 117 (379)
Q Consensus 44 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 117 (379)
|....++..|.+.|+.++|.|....|++++.|+++.+|+++. ....+.+.+.+|.++|.|+++.+++..+++|+
T Consensus 284 w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg 363 (577)
T KOG0642|consen 284 WNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG 363 (577)
T ss_pred cceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeec
Confidence 445557888999999999999999999999999999999932 34667788899999999999999999999999
Q ss_pred CCCeEEEEEeecCC-------ceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccC
Q 016982 118 GAKTVCICYYEQEN-------NWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSD 190 (379)
Q Consensus 118 ~d~~v~i~~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~ 190 (379)
.||+|+.|++.... ...+...+ .+|.+.++.+++++....|++++.||++++|+..
T Consensus 364 ~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l-~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~---------------- 426 (577)
T KOG0642|consen 364 IDGTIRCWNLPPNQDPDDSYDPSVLSGTL-LGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPT---------------- 426 (577)
T ss_pred cCceeeeeccCCCCCcccccCcchhccce-eccccceeeeeecccccceeeecCCceEEeeccC----------------
Confidence 99999999765321 11234445 7999999999999999999999999999999852
Q ss_pred CcccceEEEeec--CCcceEEEEECCCCCEE-EEEcCCCeEEEEECCCCCceeeeeee-------ecCCeeeEEEecCCc
Q 016982 191 TKFGEQILQLDL--SFSWAFGVKWSPSGNTL-AYVGHNSMIYFVDDVGPSPLAQNVAF-------RDLPLRDVLFVSEKM 260 (379)
Q Consensus 191 ~~~~~~~~~~~~--~~~~v~~~~~sp~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~-------~~~~i~~~~~s~~~~ 260 (379)
.....+|.. ..+...++++-...-.. ++...-+.--++++...... ..+.. ....+..+.+.|.+.
T Consensus 427 ---~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~-~~~~s~~~~~~~~~~~in~vVs~~~~~ 502 (577)
T KOG0642|consen 427 ---EESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDL-LIFESSASPGPRRYPQINKVVSHPTAD 502 (577)
T ss_pred ---CcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhhe-eeccccCCCcccccCccceEEecCCCC
Confidence 111122211 12233455554332111 11112222223333322211 11111 113366778888776
Q ss_pred EEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceee
Q 016982 261 VIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINC 339 (379)
Q Consensus 261 ~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 339 (379)
+.. +..|+.+++++........ ...+|...+++
T Consensus 503 ~~~~~hed~~Ir~~dn~~~~~l~----------------------------------------------s~~a~~~svts 536 (577)
T KOG0642|consen 503 ITFTAHEDRSIRFFDNKTGKILH----------------------------------------------SMVAHKDSVTS 536 (577)
T ss_pred eeEecccCCceecccccccccch----------------------------------------------heeeccceecc
Confidence 666 4567788877754432111 12468899999
Q ss_pred eeeecccCCcccceEEEeecCceEEEEeCCCcccccc
Q 016982 340 IVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDLLN 376 (379)
Q Consensus 340 ~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~~~ 376 (379)
++ +.+.+ .+|++++.||.|++|++....+.+.
T Consensus 537 la-i~~ng----~~l~s~s~d~sv~l~kld~k~~~~e 568 (577)
T KOG0642|consen 537 LA-IDPNG----PYLMSGSHDGSVRLWKLDVKTCVLE 568 (577)
T ss_pred ee-ecCCC----ceEEeecCCceeehhhccchheeec
Confidence 99 65554 8999999999999999987666553
No 187
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.85 E-value=1.3e-18 Score=157.25 Aligned_cols=339 Identities=12% Similarity=0.088 Sum_probs=204.6
Q ss_pred cceeccCcceeEEEeCCCC-cEEEEEecCCeEEEEEecCC-----ceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCe
Q 016982 4 IAVHQFAQCITCHAWSPDH-AMVAFCPNNNEVHIYKLIQE-----KWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRN 77 (379)
Q Consensus 4 ~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 77 (379)
..++.|...|..++.++.. .+|++|+.||+|++|+...- ..+...++......+.++...+.++.+|.++.||.
T Consensus 1042 AhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1042 AHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGS 1121 (1431)
T ss_pred ehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCe
Confidence 3578889999999988754 99999999999999998642 12333344434678899999999999999999999
Q ss_pred EEEEeccCCceee-----eEEeec-CCCceeE-EEECC-CCC-EEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEE
Q 016982 78 SYVWNQEGSEWVP-----TLVILR-LNRAALC-VQWSP-KEN-KFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVT 148 (379)
Q Consensus 78 i~vw~~~~~~~~~-----~~~~~~-~~~~v~~-~~~~~-~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~ 148 (379)
|.+.+++...... ...... ..+.+.+ -+|.. ... .++.+...+.|..||.+.....+..+. ....+.|+
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~--~~~hG~vT 1199 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN--QLRHGLVT 1199 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc--Ccccccee
Confidence 9999987621101 000011 1223333 33333 233 788888889999999988764332222 23457899
Q ss_pred EEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEee-cCCcceEEEEECCC---CCEEEEEc-
Q 016982 149 SVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD-LSFSWAFGVKWSPS---GNTLAYVG- 223 (379)
Q Consensus 149 ~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~---~~~l~~~~- 223 (379)
+++.+|.+++++.|+..|.+.+||+ +.+.++..+. .+..++..+..+|- ....++++
T Consensus 1200 Si~idp~~~WlviGts~G~l~lWDL------------------RF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1200 SIVIDPWCNWLVIGTSRGQLVLWDL------------------RFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGS 1261 (1431)
T ss_pred EEEecCCceEEEEecCCceEEEEEe------------------ecCceeecccCcccCCcceEEeeccCCCCceEEEecc
Confidence 9999999999999999999999997 5666666653 33467888888773 24555444
Q ss_pred -CCCeEEEEECCCCCceeeeeeee-c----------------CC---eeeEEEecCCcEEEEEeCCCeEEEEecCCCcE-
Q 016982 224 -HNSMIYFVDDVGPSPLAQNVAFR-D----------------LP---LRDVLFVSEKMVIGVGFDCNPMVFAADETGIW- 281 (379)
Q Consensus 224 -~d~~i~v~d~~~~~~~~~~~~~~-~----------------~~---i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~- 281 (379)
..+.|.+|++.++... ..+-.. + .. +.+..-.+.+-.+.+++|..|+.|+......-
T Consensus 1262 ~~~nevs~wn~~~g~~~-~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss 1340 (1431)
T KOG1240|consen 1262 SSNNEVSTWNMETGLRQ-TVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISS 1340 (1431)
T ss_pred cCCCceeeeecccCcce-EEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccccc
Confidence 5688999999887422 222211 0 00 11111223444566889999999987643211
Q ss_pred -EEEEEeccccc----CCCCCccCCCcccccceeec--ccc-ccCcccc-cccccccccccccceeeeeeecccCCcccc
Q 016982 282 -TFIKFLDERKT----SSSGPKYGSQFSEAFGKLYG--QSK-YGVGNDA-VESSRTRGGTHVNCINCIVPLREAGSSRIT 352 (379)
Q Consensus 282 -~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 352 (379)
.+.+.-..... ..........+...+..... ... .+..... .......-..|.+.|++++.+..+. .
T Consensus 1341 ~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q----~ 1416 (1431)
T KOG1240|consen 1341 YAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQ----P 1416 (1431)
T ss_pred ccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCc----c
Confidence 11100000000 00000000011111000000 000 0000000 0111112357999999999765544 7
Q ss_pred eEEEeecCceEEEEe
Q 016982 353 RFTTSGLDGKIVTWD 367 (379)
Q Consensus 353 ~l~t~~~Dg~v~iW~ 367 (379)
+|++++.||.|+||.
T Consensus 1417 llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1417 LLVSSSRDGVIKIWK 1431 (1431)
T ss_pred EEEEecCCCeeeecC
Confidence 999999999999995
No 188
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.85 E-value=1.7e-19 Score=143.79 Aligned_cols=208 Identities=18% Similarity=0.181 Sum_probs=161.9
Q ss_pred EEeccCCCceEEEEEcCCC-CEEEEEeCCCeEEEEeccCCce-----eeeEEeecCCCceeEEEECCC-CCEEEEEeCCC
Q 016982 48 HVLQKHDQIVSGIDWSVRS-NRIVTVSHDRNSYVWNQEGSEW-----VPTLVILRLNRAALCVQWSPK-ENKFAVGSGAK 120 (379)
Q Consensus 48 ~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~vw~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~ 120 (379)
-.+.+|.++|..++|+|-. +.||+|+.|.+|.||.+..+.. .+...+.+|...|--++|+|. .+.|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 3467899999999999965 7899999999999999876522 234556789999999999994 57899999999
Q ss_pred eEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEe
Q 016982 121 TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL 200 (379)
Q Consensus 121 ~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (379)
.|.+||+.++.. .-.+ .|.+.|++++|+.+|.+|++.+.|..|+|||. +.++.+..-
T Consensus 155 ~v~iWnv~tgea---li~l--~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dp------------------r~~~~v~e~ 211 (472)
T KOG0303|consen 155 TVSIWNVGTGEA---LITL--DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDP------------------RRGTVVSEG 211 (472)
T ss_pred eEEEEeccCCce---eeec--CCCCeEEEEEeccCCceeeeecccceeEEEcC------------------CCCcEeeec
Confidence 999999999983 3444 49999999999999999999999999999996 778888777
Q ss_pred ecCCc-ceEEEEECCCCCEEEEE---cCCCeEEEEECCCCCcee--eeeeeecCCeeeEEEecCCcEEE--EEeCCCeEE
Q 016982 201 DLSFS-WAFGVKWSPSGNTLAYV---GHNSMIYFVDDVGPSPLA--QNVAFRDLPLRDVLFVSEKMVIG--VGFDCNPMV 272 (379)
Q Consensus 201 ~~~~~-~v~~~~~sp~~~~l~~~---~~d~~i~v~d~~~~~~~~--~~~~~~~~~i~~~~~s~~~~~l~--~~~d~~~~i 272 (379)
.+|.+ .-..+.|-.+|..+.+| ..+..+-+||..+-.+.+ +.+. ..+.|.-.-|.+|..++. +-.|+.|+.
T Consensus 212 ~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRY 290 (472)
T KOG0303|consen 212 VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRY 290 (472)
T ss_pred ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEE
Confidence 67755 34566777888844443 257789999976654332 2332 234566666778877554 557899999
Q ss_pred EEecCCC
Q 016982 273 FAADETG 279 (379)
Q Consensus 273 ~~~~~~~ 279 (379)
|...+..
T Consensus 291 yEit~d~ 297 (472)
T KOG0303|consen 291 FEITNEP 297 (472)
T ss_pred EEecCCC
Confidence 9988754
No 189
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.85 E-value=3.7e-19 Score=154.90 Aligned_cols=253 Identities=18% Similarity=0.203 Sum_probs=178.5
Q ss_pred eeccCcceeEEEeCC-CCcEEEEEecCCeEEEEEecCCceEEE----EEeccCCCceEEEEEcCCC--CEEEEEeCCCeE
Q 016982 6 VHQFAQCITCHAWSP-DHAMVAFCPNNNEVHIYKLIQEKWEKL----HVLQKHDQIVSGIDWSVRS--NRIVTVSHDRNS 78 (379)
Q Consensus 6 ~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i 78 (379)
.+.....|+|+.|+| +..++|.|+.+|.|.+||+..+...+. .....|..++..+.|..+. .-+++++.||.|
T Consensus 238 ~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i 317 (555)
T KOG1587|consen 238 VLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSI 317 (555)
T ss_pred EEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcE
Confidence 455678999999999 667888999999999999987643212 2234588899999997654 448999999999
Q ss_pred EEEeccCCceeee---EEee-------cCCCceeEEEECC-CCCEEEEEeCCCeEEEEEeecCCcee-----EEEEEeec
Q 016982 79 YVWNQEGSEWVPT---LVIL-------RLNRAALCVQWSP-KENKFAVGSGAKTVCICYYEQENNWW-----VSKLIRKR 142 (379)
Q Consensus 79 ~vw~~~~~~~~~~---~~~~-------~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~-----~~~~~~~~ 142 (379)
..|+++.-..... .... .....+++++|.+ +.+.+++|+++|.|.--+........ ..... ..
T Consensus 318 ~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~-~~ 396 (555)
T KOG1587|consen 318 CSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTF-IT 396 (555)
T ss_pred eeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccc-cc
Confidence 9998765321110 0001 1234688999998 56789999999998763332222111 11122 56
Q ss_pred CCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCC-CEEEE
Q 016982 143 HDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSG-NTLAY 221 (379)
Q Consensus 143 ~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~ 221 (379)
|.++|+++.++|-+..++..+.|.+++||.. .....++..+..+...+++++|||.. ..+++
T Consensus 397 h~g~v~~v~~nPF~~k~fls~gDW~vriWs~-----------------~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~ 459 (555)
T KOG1587|consen 397 HIGPVYAVSRNPFYPKNFLSVGDWTVRIWSE-----------------DVIASPLLSLDSSPDYVTDVAWSPTRPAVFAT 459 (555)
T ss_pred cCcceEeeecCCCccceeeeeccceeEeccc-----------------cCCCCcchhhhhccceeeeeEEcCcCceEEEE
Confidence 8899999999998754444444999999985 12455666677777779999999965 45777
Q ss_pred EcCCCeEEEEECCCCC-ceeeeeeeecCCeeeEEEecCCcEEEEE-eCCCeEEEEec
Q 016982 222 VGHNSMIYFVDDVGPS-PLAQNVAFRDLPLRDVLFVSEKMVIGVG-FDCNPMVFAAD 276 (379)
Q Consensus 222 ~~~d~~i~v~d~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~d~~~~i~~~~ 276 (379)
+..||.|.+||+.... ..+.....+....+.+.|+++|++|++| ..|.+.++...
T Consensus 460 ~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 460 VDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred EcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 7889999999987642 2233443345667788999999999965 56678887764
No 190
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=8.7e-18 Score=147.21 Aligned_cols=300 Identities=12% Similarity=0.147 Sum_probs=203.9
Q ss_pred eeEEEeCCCCcEEEEEecCCeEEEEEecCCceE--EEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccC--Cce
Q 016982 13 ITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWE--KLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEG--SEW 88 (379)
Q Consensus 13 i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~--~~~ 88 (379)
-.++.+++.|.+.+..- +..+.+|....+... ....-..|...+++.++||++++++++..||.|.+|.--. +.-
T Consensus 163 ~~~I~~~~~ge~~~i~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~ 241 (792)
T KOG1963|consen 163 PKSIVDNNSGEFKGIVH-MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS 241 (792)
T ss_pred CccEEEcCCceEEEEEE-eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccc
Confidence 45678888887776664 467889988875211 1111234666789999999999999999999999996433 221
Q ss_pred eeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeE
Q 016982 89 VPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKC 168 (379)
Q Consensus 89 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i 168 (379)
.....+.-|...|.+++|+++|.+|++|+..+.+.+|.+.+++ .+.+ ..-.++|..+.++||+.+.+....|+.|
T Consensus 242 ~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~----kqfL-PRLgs~I~~i~vS~ds~~~sl~~~DNqI 316 (792)
T KOG1963|consen 242 ETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK----KQFL-PRLGSPILHIVVSPDSDLYSLVLEDNQI 316 (792)
T ss_pred ccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC----cccc-cccCCeeEEEEEcCCCCeEEEEecCceE
Confidence 1122235588899999999999999999999999999999987 3444 6677899999999999999999999999
Q ss_pred EEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeee----
Q 016982 169 RVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVA---- 244 (379)
Q Consensus 169 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---- 244 (379)
.+...........-.. ... .+... -....+-.+.+.++|.-+.++..+..|.|.+||+.+...+ ..+.
T Consensus 317 ~li~~~dl~~k~tIsg--i~~--~~~~~---k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i-~~~~v~~~ 388 (792)
T KOG1963|consen 317 HLIKASDLEIKSTISG--IKP--PTPST---KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTI-YKLQVCDE 388 (792)
T ss_pred EEEeccchhhhhhccC--ccC--CCccc---cccccccceeEEEcCCCCceeecCCCceEEEEecccccee-eeEEEEee
Confidence 9987521110000000 000 00000 0111334677899997777888889999999999876643 2222
Q ss_pred -e------ecCCeeeEEEecCCcEEEEEe---------C--CCeEEEEecC-CCcEEEEEEecccccCCCCCccCCCccc
Q 016982 245 -F------RDLPLRDVLFVSEKMVIGVGF---------D--CNPMVFAADE-TGIWTFIKFLDERKTSSSGPKYGSQFSE 305 (379)
Q Consensus 245 -~------~~~~i~~~~~s~~~~~l~~~~---------d--~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (379)
. +.-.+++++.+..|.++++.. | -.+++|..++ ...|.+....
T Consensus 389 n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I------------------ 450 (792)
T KOG1963|consen 389 NYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKI------------------ 450 (792)
T ss_pred cccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEE------------------
Confidence 1 122467777777888888542 2 2355666554 2334443322
Q ss_pred ccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCc
Q 016982 306 AFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQ 371 (379)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~ 371 (379)
...|...+...++.++.. ....+|+|.||.++||-+.+.
T Consensus 451 ------------------------~~PH~~~~vat~~~~~~r---s~~~vta~~dg~~KiW~~~~~ 489 (792)
T KOG1963|consen 451 ------------------------NNPHGNAFVATIFLNPTR---SVRCVTASVDGDFKIWVFTDD 489 (792)
T ss_pred ------------------------ecCCCceeEEEEEecCcc---cceeEEeccCCeEEEEEEecc
Confidence 235877777777555443 238999999999999999543
No 191
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.84 E-value=1.8e-18 Score=134.49 Aligned_cols=209 Identities=16% Similarity=0.215 Sum_probs=164.9
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCc-eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCC
Q 016982 53 HDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSE-WVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQEN 131 (379)
Q Consensus 53 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~ 131 (379)
...+|+|.+|++|+..++.+..+..|.||.....+ +.+...+..|...|+.++|+|..+.|++++.|..-++|....+.
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 35689999999999999999999999999998887 67777778899999999999999999999999999999987666
Q ss_pred ceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEE
Q 016982 132 NWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVK 211 (379)
Q Consensus 132 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 211 (379)
.|...-.+ ..+....+++.|+|..+.|++|+....|.||-... +.+. .-..+.-..+...|++++
T Consensus 89 ~WkptlvL-lRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~-ENdW-------------WVsKhikkPirStv~sld 153 (361)
T KOG1523|consen 89 TWKPTLVL-LRINRAATCVKWSPKENKFAVGSGARLISVCYYEQ-ENDW-------------WVSKHIKKPIRSTVTSLD 153 (361)
T ss_pred eeccceeE-EEeccceeeEeecCcCceEEeccCccEEEEEEEec-ccce-------------ehhhhhCCccccceeeee
Confidence 66555555 67889999999999999999999999999997520 0000 000011123456799999
Q ss_pred ECCCCCEEEEEcCCCeEEEEEC-----CCC------------CceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEE
Q 016982 212 WSPSGNTLAYVGHNSMIYFVDD-----VGP------------SPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVF 273 (379)
Q Consensus 212 ~sp~~~~l~~~~~d~~i~v~d~-----~~~------------~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~ 273 (379)
|+|++-+|++|+.|+..+++.. ... .+++.+.....+.+..+.|+|+|..|+ .+.|..+.+-
T Consensus 154 WhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~ 233 (361)
T KOG1523|consen 154 WHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFV 233 (361)
T ss_pred ccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEe
Confidence 9999999999999999999852 111 012223333467799999999999999 8899888765
Q ss_pred Eec
Q 016982 274 AAD 276 (379)
Q Consensus 274 ~~~ 276 (379)
+..
T Consensus 234 da~ 236 (361)
T KOG1523|consen 234 DAA 236 (361)
T ss_pred ecC
Confidence 543
No 192
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.84 E-value=1.9e-19 Score=149.15 Aligned_cols=208 Identities=14% Similarity=0.260 Sum_probs=159.1
Q ss_pred cEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCcee
Q 016982 23 AMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAAL 102 (379)
Q Consensus 23 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~ 102 (379)
..|+.++.||.+.|.+-.. +....+..|.+.+.+-.|+|+|.-|++++.||.|++|.-. |-+...+ .....+|+
T Consensus 76 d~~~i~s~DGkf~il~k~~---rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRStl--~Q~~~~v~ 149 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSA---RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRSTV--VQNEESIR 149 (737)
T ss_pred ceEEEEcCCceEEEecccc---hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHHHH--hhcCceeE
Confidence 4688888999999987554 4667788999999999999999999999999999999854 3322222 33567899
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEecccccccccc
Q 016982 103 CVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKE 182 (379)
Q Consensus 103 ~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 182 (379)
|++|.|+.+.++.+.. +.+.|-.+..... .-.. ..|.+-|.++.|+|.++.+++|++|-..++||
T Consensus 150 c~~W~p~S~~vl~c~g-~h~~IKpL~~n~k---~i~W-kAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD---------- 214 (737)
T KOG1524|consen 150 CARWAPNSNSIVFCQG-GHISIKPLAANSK---IIRW-RAHDGLVLSLSWSTQSNIIASGGEDFRFKIWD---------- 214 (737)
T ss_pred EEEECCCCCceEEecC-CeEEEeecccccc---eeEE-eccCcEEEEeecCccccceeecCCceeEEeec----------
Confidence 9999999887777654 4555544444331 2222 79999999999999999999999999999999
Q ss_pred ccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEE
Q 016982 183 KKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVI 262 (379)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 262 (379)
..+..+..-..|..+|++++|+|+ ..++.++. .+++ .-....+.|..++||+||..+
T Consensus 215 ---------~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R------------~~~p~~GSifnlsWS~DGTQ~ 271 (737)
T KOG1524|consen 215 ---------AQGANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTAR------------FSSPRVGSIFNLSWSADGTQA 271 (737)
T ss_pred ---------ccCcccccCChhccceeeeeeccc-cceeeeee-eeee------------ecCCCccceEEEEEcCCCcee
Confidence 457888888889999999999999 55555543 3333 111235679999999999999
Q ss_pred EEEeCCCeEEEE
Q 016982 263 GVGFDCNPMVFA 274 (379)
Q Consensus 263 ~~~~d~~~~i~~ 274 (379)
+++......++.
T Consensus 272 a~gt~~G~v~~A 283 (737)
T KOG1524|consen 272 TCGTSTGQLIVA 283 (737)
T ss_pred eccccCceEEEe
Confidence 976555544443
No 193
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.83 E-value=4.1e-18 Score=149.33 Aligned_cols=212 Identities=14% Similarity=0.135 Sum_probs=144.2
Q ss_pred CCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC---CeEEEEeccCCceeeeEEeecCCCceeEEEEC
Q 016982 31 NNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD---RNSYVWNQEGSEWVPTLVILRLNRAALCVQWS 107 (379)
Q Consensus 31 dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~ 107 (379)
+..|++||..... ...+..|...+.+++|+|||++|+.++.+ ..|++||+.+++..... ...+....++|+
T Consensus 183 ~~~i~i~d~dg~~---~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~---~~~g~~~~~~wS 256 (429)
T PRK01742 183 PYEVRVADYDGFN---QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA---SFRGHNGAPAFS 256 (429)
T ss_pred eEEEEEECCCCCC---ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe---cCCCccCceeEC
Confidence 4689999987652 34566778889999999999999887643 36999999887633322 223344578999
Q ss_pred CCCCEEEEEe-CCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee-CCCeEEEEeccccccccccccC
Q 016982 108 PKENKFAVGS-GAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS-TDGKCRVFSTFIKGVDIKEKKE 185 (379)
Q Consensus 108 ~~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~ 185 (379)
|||+.|+.++ .+|.+.||.++.... ....+ ..+...+....|+|||+.|+..+ .++...||++.
T Consensus 257 PDG~~La~~~~~~g~~~Iy~~d~~~~--~~~~l-t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~----------- 322 (429)
T PRK01742 257 PDGSRLAFASSKDGVLNIYVMGANGG--TPSQL-TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMS----------- 322 (429)
T ss_pred CCCCEEEEEEecCCcEEEEEEECCCC--CeEee-ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEE-----------
Confidence 9999888865 578777765543221 13344 45666788999999998777655 57888888762
Q ss_pred CCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-E
Q 016982 186 GTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-V 264 (379)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~ 264 (379)
..+.....+ .+.. ..+.|+|+|++|++.+.++ +.+||+.++... .+... ....++.|+|||++|+ +
T Consensus 323 ------~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~--~lt~~-~~~~~~~~sPdG~~i~~~ 389 (429)
T PRK01742 323 ------ASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTE--VLSST-FLDESPSISPNGIMIIYS 389 (429)
T ss_pred ------CCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeE--EecCC-CCCCCceECCCCCEEEEE
Confidence 111112222 2222 4578999999998887765 556998876532 22211 2346788999999888 5
Q ss_pred EeCCCeEEEEe
Q 016982 265 GFDCNPMVFAA 275 (379)
Q Consensus 265 ~~d~~~~i~~~ 275 (379)
+.++...+|..
T Consensus 390 s~~g~~~~l~~ 400 (429)
T PRK01742 390 STQGLGKVLQL 400 (429)
T ss_pred EcCCCceEEEE
Confidence 56777766653
No 194
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.83 E-value=6.7e-19 Score=145.97 Aligned_cols=227 Identities=15% Similarity=0.215 Sum_probs=157.3
Q ss_pred eccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCce-EEEEEcC-------CCCEEEEEeCCCeE
Q 016982 7 HQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIV-SGIDWSV-------RSNRIVTVSHDRNS 78 (379)
Q Consensus 7 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v-~~~~~~~-------~~~~l~~~~~d~~i 78 (379)
..|...+.|+.|+.+...+.++..+..+.-|++.+...+. ..+. ...| +.+..-+ ....++.++.||.+
T Consensus 11 ~r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~-~~~p--~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf 87 (737)
T KOG1524|consen 11 NRNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEV-AKLP--DDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF 87 (737)
T ss_pred cccceeEEeecccccceEEEeccCceEEEeecccchhhhh-hhCC--cccCCccccccccccCCCCCcceEEEEcCCceE
Confidence 3567788899999887777666544444444554432111 1111 1111 1111111 12468888999999
Q ss_pred EEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcE
Q 016982 79 YVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVF 158 (379)
Q Consensus 79 ~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 158 (379)
.+.+-. ++....+ ..|.+.+.+-.|+|+|.-|+++++||.|++|.-. +- +...+ .....+|+|++|.|+.+.
T Consensus 88 ~il~k~-~rVE~sv--~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GM---LRStl-~Q~~~~v~c~~W~p~S~~ 159 (737)
T KOG1524|consen 88 VILNKS-ARVERSI--SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GM---LRSTV-VQNEESIRCARWAPNSNS 159 (737)
T ss_pred EEeccc-chhhhhh--hhhhhhhhhcccCCCCceeeeecCCceEEEEecc-ch---HHHHH-hhcCceeEEEEECCCCCc
Confidence 988743 3333333 6799999999999999999999999999999643 32 12223 556789999999999866
Q ss_pred EEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCc
Q 016982 159 LATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSP 238 (379)
Q Consensus 159 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~ 238 (379)
++.+. .+.+.|=-+ .....+.....|.+-|.++.|+|..+++++|++|-..++||-...
T Consensus 160 vl~c~-g~h~~IKpL------------------~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~-- 218 (737)
T KOG1524|consen 160 IVFCQ-GGHISIKPL------------------AANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA-- 218 (737)
T ss_pred eEEec-CCeEEEeec------------------ccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCc--
Confidence 66543 345555443 334556677899999999999999999999999999999996543
Q ss_pred eeeeeeeecCCeeeEEEecCCcEEEEEe
Q 016982 239 LAQNVAFRDLPLRDVLFVSEKMVIGVGF 266 (379)
Q Consensus 239 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 266 (379)
.+..-..|..+|++++|.|+ +.++.++
T Consensus 219 ~Lf~S~~~ey~ITSva~npd-~~~~v~S 245 (737)
T KOG1524|consen 219 NLFTSAAEEYAITSVAFNPE-KDYLLWS 245 (737)
T ss_pred ccccCChhccceeeeeeccc-cceeeee
Confidence 23555678999999999999 5444433
No 195
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=9.5e-18 Score=125.64 Aligned_cols=235 Identities=15% Similarity=0.119 Sum_probs=171.3
Q ss_pred cceeEEEeCCCCcEEEEEecCCeEEEEEecCC--------ceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 016982 11 QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQE--------KWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWN 82 (379)
Q Consensus 11 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~ 82 (379)
..|.+-+++|.+++|++|..+|.|.++.++.- ...++-..++|+++|+.++|. ..+|++++ ||.|+=|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 45667789999999999999999999998631 123455568999999999998 44677766 59999887
Q ss_pred ccCCc----eeeeEEee--c-----CCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEE
Q 016982 83 QEGSE----WVPTLVIL--R-----LNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVA 151 (379)
Q Consensus 83 ~~~~~----~~~~~~~~--~-----~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~ 151 (379)
..... +++..+.. - .-..|+++...|..+-++.++.|+.++-||++++. +.+.+ .+|.+.+.++.
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~---i~r~~-rGHtDYvH~vv 163 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGR---IQREY-RGHTDYVHSVV 163 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCE---EEEEE-cCCcceeeeee
Confidence 65431 11111111 0 12468899999987777777789999999999998 56666 99999999999
Q ss_pred EcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecC----------CcceEEEEECCCCCEEEE
Q 016982 152 WHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS----------FSWAFGVKWSPSGNTLAY 221 (379)
Q Consensus 152 ~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~v~~~~~sp~~~~l~~ 221 (379)
-......+++|++||++++||+ ++.+++..+... ..+|-+++ -+..+|++
T Consensus 164 ~R~~~~qilsG~EDGtvRvWd~------------------kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvC 223 (325)
T KOG0649|consen 164 GRNANGQILSGAEDGTVRVWDT------------------KTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVC 223 (325)
T ss_pred ecccCcceeecCCCccEEEEec------------------cccceeEEeccccChhhcCcccCceeEEEe--ccCceEEe
Confidence 8666678999999999999997 667777666432 22454554 45667876
Q ss_pred EcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEec
Q 016982 222 VGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAAD 276 (379)
Q Consensus 222 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~ 276 (379)
| ....+.+|.++..+. .+.+. -..++..+.|.. ...|++|..+.+.-|.++
T Consensus 224 G-gGp~lslwhLrsse~-t~vfp-ipa~v~~v~F~~-d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 224 G-GGPKLSLWHLRSSES-TCVFP-IPARVHLVDFVD-DCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred c-CCCceeEEeccCCCc-eEEEe-cccceeEeeeec-ceEEEeccccceeeeeec
Confidence 5 456799999998764 35554 356777888854 456666666677766654
No 196
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=3.5e-19 Score=143.40 Aligned_cols=202 Identities=13% Similarity=0.071 Sum_probs=149.9
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEE
Q 016982 58 SGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSK 137 (379)
Q Consensus 58 ~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~ 137 (379)
..++|+++|..|++++.||++++|++.+... ......|.+.|.++.|+|||++|++.+.| ..+||+.+++..+ ..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t--~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~--a~ 222 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT--ILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAAL--AR 222 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchh--hhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchh--hh
Confidence 4789999999999999999999999877763 33446789999999999999999999999 8999999998531 11
Q ss_pred EEeecCCcCEEEEEEcCCC-----cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEE
Q 016982 138 LIRKRHDSSVTSVAWHPNN-----VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKW 212 (379)
Q Consensus 138 ~~~~~~~~~v~~~~~~p~~-----~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 212 (379)
.-..........+.|+.|+ ..++....-+.|+.||+.....+ ...+ ..+.......|++++.
T Consensus 223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~------------~~l~-~~~~~~~~~siSsl~V 289 (398)
T KOG0771|consen 223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS------------NFLR-LRKKIKRFKSISSLAV 289 (398)
T ss_pred cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc------------cccc-hhhhhhccCcceeEEE
Confidence 1112344456677888776 33333344567888876322111 0001 1111122345999999
Q ss_pred CCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecC
Q 016982 213 SPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADE 277 (379)
Q Consensus 213 sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~ 277 (379)
+++|++++.|+.||.|.|++..+.+.....-+.|...|+.+.|+||.++++ .+.+....+..+..
T Consensus 290 S~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 290 SDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred cCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999999999999999998887655555567889999999999999888 77888888877654
No 197
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=8.8e-19 Score=145.70 Aligned_cols=234 Identities=12% Similarity=0.148 Sum_probs=163.6
Q ss_pred cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEE-eccCCCceEEEEEcCC--CCEEEEEeCCCeEEE
Q 016982 4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHV-LQKHDQIVSGIDWSVR--SNRIVTVSHDRNSYV 80 (379)
Q Consensus 4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~v 80 (379)
.+|.+|.+.|+|+.|+.+|.+|++|+.|-.+.|||.... ++++. -.+|...|.++.|-|. .+.+++|..|..|++
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~--KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEY--KLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhc--ceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 468899999999999999999999999999999999864 44443 4689999999999985 468899999999999
Q ss_pred EeccCC--------ceeeeEEeecCCCceeEEEECCCC-CEEEEEeCCCeEEEEEeecCCceeEEE----EEe--ecCCc
Q 016982 81 WNQEGS--------EWVPTLVILRLNRAALCVQWSPKE-NKFAVGSGAKTVCICYYEQENNWWVSK----LIR--KRHDS 145 (379)
Q Consensus 81 w~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~----~~~--~~~~~ 145 (379)
+|+... -.........|...|..++-.|++ +.+.++++||+++-+|++......... .+. ....-
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 999742 112223335678889999999988 889999999999999998754211111 000 11123
Q ss_pred CEEEEEEcCCC-cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEee-cC-----------CcceEEEEE
Q 016982 146 SVTSVAWHPNN-VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD-LS-----------FSWAFGVKW 212 (379)
Q Consensus 146 ~v~~~~~~p~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----------~~~v~~~~~ 212 (379)
...++..+|.. .+|++|+.|...++||.+..-..++..............++.-+. +| ...++.+.|
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf 281 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF 281 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEE
Confidence 56789999965 789999999999999953221111111110000011112222221 11 112678999
Q ss_pred CCCCCEEEEEcCCCeEEEEECCCCCce
Q 016982 213 SPSGNTLAYVGHNSMIYFVDDVGPSPL 239 (379)
Q Consensus 213 sp~~~~l~~~~~d~~i~v~d~~~~~~~ 239 (379)
+|+|.-|+..-..-.|+++|+...+..
T Consensus 282 npNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 282 NPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred CCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 999988877666678999998765543
No 198
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.81 E-value=5.2e-19 Score=149.58 Aligned_cols=217 Identities=11% Similarity=0.182 Sum_probs=156.0
Q ss_pred cCcceeEEEeCC-CCcEEEEEecCCeEEEEEecCCc-----eEEEEEeccCCCceEEEEEcCCC-CEEEEEeCCCeEEEE
Q 016982 9 FAQCITCHAWSP-DHAMVAFCPNNNEVHIYKLIQEK-----WEKLHVLQKHDQIVSGIDWSVRS-NRIVTVSHDRNSYVW 81 (379)
Q Consensus 9 ~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~vw 81 (379)
....|+.+.|+| |..+||+++.||.|++|.+..+. ..+...+..|...|+++.|+|-. +.|++++.|.+|++|
T Consensus 626 Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lW 705 (1012)
T KOG1445|consen 626 NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELW 705 (1012)
T ss_pred cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeee
Confidence 357899999999 77899999999999999997542 34567788999999999999964 789999999999999
Q ss_pred eccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEE
Q 016982 82 NQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLAT 161 (379)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~ 161 (379)
|+.+......+ .+|...|..++|+|+|+.+++.+.||+|++|+.+.++.. ...-...-...-..+.|.-+|+++++
T Consensus 706 Dl~~~~~~~~l--~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~p--v~Eg~gpvgtRgARi~wacdgr~viv 781 (1012)
T KOG1445|consen 706 DLANAKLYSRL--VGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQP--VYEGKGPVGTRGARILWACDGRIVIV 781 (1012)
T ss_pred ehhhhhhhhee--ccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCc--cccCCCCccCcceeEEEEecCcEEEE
Confidence 99998855555 789999999999999999999999999999988776521 10000011122346778889998888
Q ss_pred eeCC----CeEEEEeccccccccccccCCCccCCcccceEEEe--ecCCcceEEEEECCCCC-EEEEEcCCCeEEEEECC
Q 016982 162 TSTD----GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL--DLSFSWAFGVKWSPSGN-TLAYVGHNSMIYFVDDV 234 (379)
Q Consensus 162 ~~~d----~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~sp~~~-~l~~~~~d~~i~v~d~~ 234 (379)
.+.| ..|.+||... -....+.+. .... .+.-..+.+|.+ ++++|-.|..|.+|.+-
T Consensus 782 ~Gfdk~SeRQv~~Y~Aq~----------------l~~~pl~t~~lDvap-s~LvP~YD~Ds~~lfltGKGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 782 VGFDKSSERQVQMYDAQT----------------LDLRPLYTQVLDVAP-SPLVPHYDYDSNVLFLTGKGDRFVNMYEVI 844 (1012)
T ss_pred ecccccchhhhhhhhhhh----------------ccCCcceeeeecccC-ccccccccCCCceEEEecCCCceEEEEEec
Confidence 7765 4578887510 111222221 1111 112234455555 45677789999999987
Q ss_pred CCCceeeeeeee
Q 016982 235 GPSPLAQNVAFR 246 (379)
Q Consensus 235 ~~~~~~~~~~~~ 246 (379)
-..+.+..+..+
T Consensus 845 ~esPy~lpl~~f 856 (1012)
T KOG1445|consen 845 YESPYLLPLAPF 856 (1012)
T ss_pred CCCceeeecccc
Confidence 665554444444
No 199
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=7.6e-19 Score=137.64 Aligned_cols=227 Identities=11% Similarity=0.089 Sum_probs=160.5
Q ss_pred ceeccCcceeEEEeCC--CCcEEEEEecCCeEEEEEecCCceEEEEEeccCC-CceEEEEEcCCCCEEEEEe----CCCe
Q 016982 5 AVHQFAQCITCHAWSP--DHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHD-QIVSGIDWSVRSNRIVTVS----HDRN 77 (379)
Q Consensus 5 ~~~~~~~~i~~~~~s~--~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~----~d~~ 77 (379)
.+.++...+..++|.. ....+.+|+.||+|++||++............++ .+..+++..-.++.+++|. .+-.
T Consensus 65 ~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~ 144 (376)
T KOG1188|consen 65 EFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDAS 144 (376)
T ss_pred eecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceE
Confidence 4567788888999976 4578899999999999999876434455555565 5677888776778888875 4567
Q ss_pred EEEEeccCCce-eeeEEeecCCCceeEEEECC-CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCC
Q 016982 78 SYVWNQEGSEW-VPTLVILRLNRAALCVQWSP-KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPN 155 (379)
Q Consensus 78 i~vw~~~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 155 (379)
|.+||++..+. +..+ ...|...|+++.|+| +.++|++|+.||.|.+||++........... ..+...|.++.|..+
T Consensus 145 v~lwDvR~~qq~l~~~-~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~v-iN~~sSI~~igw~~~ 222 (376)
T KOG1188|consen 145 VVLWDVRSEQQLLRQL-NESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHV-INHGSSIHLIGWLSK 222 (376)
T ss_pred EEEEEeccccchhhhh-hhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHh-hcccceeeeeeeecC
Confidence 99999998765 3333 357999999999999 6789999999999999999876532222222 467778999999987
Q ss_pred C-cEEEEeeCCCeEEEEeccccccccccccCCCc-------------------------------------------cCC
Q 016982 156 N-VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTS-------------------------------------------SDT 191 (379)
Q Consensus 156 ~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~-------------------------------------------~~~ 191 (379)
+ +.+.+-+......+|++....-+.+.+.+... ...
T Consensus 223 ~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~ 302 (376)
T KOG1188|consen 223 KYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSG 302 (376)
T ss_pred CcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccc
Confidence 7 56888888999999998632211111111000 000
Q ss_pred cccceEEEeec-CCcceEEEEECCCCCEEEEEcCCCeEEEEEC
Q 016982 192 KFGEQILQLDL-SFSWAFGVKWSPSGNTLAYVGHNSMIYFVDD 233 (379)
Q Consensus 192 ~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~ 233 (379)
...+.+..+.+ |..-|+++.|...+..+.+|++||.+.+|..
T Consensus 303 ~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 303 SLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred cccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 11112222333 3345677778778889999999999999975
No 200
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=9.1e-18 Score=134.21 Aligned_cols=260 Identities=11% Similarity=0.097 Sum_probs=177.7
Q ss_pred EEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCC------ceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCe
Q 016982 48 HVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGS------EWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKT 121 (379)
Q Consensus 48 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 121 (379)
..+.+|.+.|+++.|+.++++|++|+.|..+++|+++.. +++... -..|...|.|++|.....++++|..+++
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~-~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVM-EHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceec-cCccccceEEEEEccCCeeEecCCCcce
Confidence 345679999999999999999999999999999998642 322222 2346689999999999999999999999
Q ss_pred EEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEee
Q 016982 122 VCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD 201 (379)
Q Consensus 122 v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (379)
|...|+++.+...+... ....+.|+.+..+|..+.|++.+.++.|.+||.+. ++ ..+.++ ...
T Consensus 129 VI~HDiEt~qsi~V~~~--~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd-----~~---------~~~~~~-~~A 191 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANE--NNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRD-----RQ---------NPISLV-LPA 191 (609)
T ss_pred eEeeecccceeeeeecc--cCcccceeecccCCCCceEEEEecCceEEEEeccC-----CC---------CCCcee-eec
Confidence 99999999874222111 23345999999999999999999999999999731 10 011222 122
Q ss_pred cCCcceEEEEECCC-CCEEEEEcCCCeEEEEECCCCCceeee------eeeecCCeeeEEEecCCcEEEE-EeCCCeEEE
Q 016982 202 LSFSWAFGVKWSPS-GNTLAYVGHNSMIYFVDDVGPSPLAQN------VAFRDLPLRDVLFVSEKMVIGV-GFDCNPMVF 273 (379)
Q Consensus 202 ~~~~~v~~~~~sp~-~~~l~~~~~d~~i~v~d~~~~~~~~~~------~~~~~~~i~~~~~s~~~~~l~~-~~d~~~~i~ 273 (379)
.......++.|+|. -.+|++++..+.+-+||.+.....+.. ++.....-.++.|+|+|..+.+ -......+|
T Consensus 192 N~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~ 271 (609)
T KOG4227|consen 192 NSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYF 271 (609)
T ss_pred CCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEe
Confidence 23455778899995 567788888899999999876543221 1111223367899999876553 333445555
Q ss_pred EecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccce
Q 016982 274 AADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITR 353 (379)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 353 (379)
++-...+.-+.. +.. ..| -.....+.+++ |-.+ ..
T Consensus 272 D~~S~R~~V~k~--D~N------------------------~~G-------------Y~N~~T~KS~~-F~~D-----~~ 306 (609)
T KOG4227|consen 272 DFISQRCFVLKS--DHN------------------------PNG-------------YCNIKTIKSMT-FIDD-----YT 306 (609)
T ss_pred eeecccceeEec--cCC------------------------CCc-------------ceeeeeeeeee-eecc-----ee
Confidence 544332221110 000 000 01234567777 5444 46
Q ss_pred EEEeecCceEEEEeCCC
Q 016982 354 FTTSGLDGKIVTWDLES 370 (379)
Q Consensus 354 l~t~~~Dg~v~iW~~~~ 370 (379)
++||++|-.|.+|.+..
T Consensus 307 v~tGSD~~~i~~WklP~ 323 (609)
T KOG4227|consen 307 VATGSDHWGIHIWKLPR 323 (609)
T ss_pred eeccCcccceEEEecCC
Confidence 99999999999999975
No 201
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.81 E-value=4.7e-17 Score=142.27 Aligned_cols=220 Identities=15% Similarity=0.181 Sum_probs=149.6
Q ss_pred ceeccCcceeEEEeCCCCcEEEEEec---CCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEE-eCCC--eE
Q 016982 5 AVHQFAQCITCHAWSPDHAMVAFCPN---NNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTV-SHDR--NS 78 (379)
Q Consensus 5 ~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~--~i 78 (379)
.+..+...+.+.+|||||+.|+..+. +..|++|++.+++.+.+..+.++ +..++|+|||+.|+.. +.++ .|
T Consensus 193 ~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~---~~~~~~SPDG~~La~~~~~~g~~~I 269 (429)
T PRK03629 193 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH---NGAPAFSPDGSKLAFALSKTGSLNL 269 (429)
T ss_pred EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCC---cCCeEECCCCCEEEEEEcCCCCcEE
Confidence 34556678999999999999987643 45799999988754444444443 4568999999988765 3344 58
Q ss_pred EEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCC-CeEEEEEe--ecCCceeEEEEEeecCCcCEEEEEEcCC
Q 016982 79 YVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGA-KTVCICYY--EQENNWWVSKLIRKRHDSSVTSVAWHPN 155 (379)
Q Consensus 79 ~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~v~i~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 155 (379)
.+||+.+++.... ..+...+....|+|||+.|+..+.+ +...+|.+ ..+. .+.+ ...........|+||
T Consensus 270 ~~~d~~tg~~~~l---t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~----~~~l-t~~~~~~~~~~~SpD 341 (429)
T PRK03629 270 YVMDLASGQIRQV---TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA----PQRI-TWEGSQNQDADVSSD 341 (429)
T ss_pred EEEECCCCCEEEc---cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC----eEEe-ecCCCCccCEEECCC
Confidence 8999988864332 3344567889999999988877753 45556644 4443 2333 233445567899999
Q ss_pred CcEEEEeeCC---CeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCe---EE
Q 016982 156 NVFLATTSTD---GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSM---IY 229 (379)
Q Consensus 156 ~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~---i~ 229 (379)
|++|+..+.+ ..|.+||+ .+++ ...+.. ........|+|||++|+.++.++. +.
T Consensus 342 G~~Ia~~~~~~g~~~I~~~dl------------------~~g~-~~~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~ 401 (429)
T PRK03629 342 GKFMVMVSSNGGQQHIAKQDL------------------ATGG-VQVLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLN 401 (429)
T ss_pred CCEEEEEEccCCCceEEEEEC------------------CCCC-eEEeCC-CCCCCCceECCCCCEEEEEEcCCCceEEE
Confidence 9998876543 35777876 2232 222322 112346789999999998887653 67
Q ss_pred EEECCCCCceeeeeeeecCCeeeEEEec
Q 016982 230 FVDDVGPSPLAQNVAFRDLPLRDVLFVS 257 (379)
Q Consensus 230 v~d~~~~~~~~~~~~~~~~~i~~~~~s~ 257 (379)
++++.... .+.+..+...+...+|+|
T Consensus 402 ~~~~~G~~--~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 402 LVSTDGRF--KARLPATDGQVKFPAWSP 427 (429)
T ss_pred EEECCCCC--eEECccCCCCcCCcccCC
Confidence 77875433 355666777888999987
No 202
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=4.6e-17 Score=145.43 Aligned_cols=297 Identities=14% Similarity=0.174 Sum_probs=202.0
Q ss_pred cceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccC---CCceEEEEEcC--CCCEEEEEeCCCeEEEEeccC
Q 016982 11 QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKH---DQIVSGIDWSV--RSNRIVTVSHDRNSYVWNQEG 85 (379)
Q Consensus 11 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~---~~~v~~~~~~~--~~~~l~~~~~d~~i~vw~~~~ 85 (379)
.+...+.|+|-...++++...-.|++||.+.+ +.+..+..+ ...|+.+.+-. |..++++|+.||.|+||+--.
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~--~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKG--RLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccC--ceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccc
Confidence 35667889998889999887789999999887 555555443 34688888753 346889999999999997432
Q ss_pred C-----ceeeeEE-e----ecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcC-
Q 016982 86 S-----EWVPTLV-I----LRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHP- 154 (379)
Q Consensus 86 ~-----~~~~~~~-~----~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p- 154 (379)
. +.+.... + ....+.-.-+.|......|++++.-..|+|||..... +..-+..+....++++.-+-
T Consensus 1143 ~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~---~~~diP~~s~t~vTaLS~~~~ 1219 (1387)
T KOG1517|consen 1143 DKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQ---VVADIPYGSSTLVTALSADLV 1219 (1387)
T ss_pred cccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccce---eEeecccCCCccceeeccccc
Confidence 2 1111110 0 0011112445777766677777778899999998876 34444345555666665443
Q ss_pred CCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcc--eEEEEECCCCCE-EEEEcCCCeEEEE
Q 016982 155 NNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSW--AFGVKWSPSGNT-LAYVGHNSMIYFV 231 (379)
Q Consensus 155 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~sp~~~~-l~~~~~d~~i~v~ 231 (379)
.|+.+++|..||.|++||.+ .. .....+.....|+.. |..+.+.+.|-- |++|+.+|.|++|
T Consensus 1220 ~gn~i~AGfaDGsvRvyD~R-------~a--------~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~ 1284 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRR-------MA--------PPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLL 1284 (1387)
T ss_pred CCceEEEeecCCceEEeecc-------cC--------CccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEE
Confidence 36999999999999999862 11 112345556677766 999999997655 9999999999999
Q ss_pred ECCCC-Cceeeeeeee---cCCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCccccc
Q 016982 232 DDVGP-SPLAQNVAFR---DLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAF 307 (379)
Q Consensus 232 d~~~~-~~~~~~~~~~---~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (379)
|++.. ++....+..| ++..+++..++...++|+|+.+.+.||+..+... ...+..
T Consensus 1285 DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l-~~~k~n-------------------- 1343 (1387)
T KOG1517|consen 1285 DLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQL-NIIKYN-------------------- 1343 (1387)
T ss_pred ecccCcccccceeeeccccCccceeeeeccCCCeeeecCcceEEEEecChhhh-cccccC--------------------
Confidence 99984 2221222222 2358999999999999988889999999876542 111100
Q ss_pred ceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCcc
Q 016982 308 GKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQE 372 (379)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~ 372 (379)
..|. .--.+.+.|++|+ |.. .++|.|+.|.+|.||......
T Consensus 1344 ~~F~-------------------~q~~gs~scL~FH-P~~----~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1344 PGFM-------------------GQRIGSVSCLAFH-PHR----LLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred cccc-------------------cCcCCCcceeeec-chh----HhhhhccCCceEEEeecCCcC
Confidence 1111 1123456899955 332 689999999999999887643
No 203
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.6e-18 Score=142.07 Aligned_cols=279 Identities=13% Similarity=0.115 Sum_probs=194.1
Q ss_pred EEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCeE
Q 016982 45 EKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSP--KENKFAVGSGAKTV 122 (379)
Q Consensus 45 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v 122 (379)
.....|..|.+.|+.+.|+..|..|++++.|..|.+||...+..+..+. .+|...|....|-| +...+++++.||.+
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~-SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFE-SGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccc-cccccchhhhhccCCCCCcCceeccccCce
Confidence 4556788899999999999999999999999999999999988666654 57888888888888 34678999999999
Q ss_pred EEEEeecCCceeEEEEEeecCCcCEEEEEEcCCC-cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEee
Q 016982 123 CICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNN-VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD 201 (379)
Q Consensus 123 ~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (379)
++=.+.......-.+.+ ..|.++|..++.-|+. +-|.+++.|+.+.-+|++ ...+ ......-.
T Consensus 212 r~s~i~~t~~~e~t~rl-~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr-------~~~p--------a~~~~cr~ 275 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRL-APHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLR-------QDVP--------AEKFVCRE 275 (559)
T ss_pred eeeeeccccceecceec-ccccCccceeeecCCCCCcccccccccceeeeeec-------cCCc--------cceeeeec
Confidence 98666544432223344 7899999999999976 678899999999988862 1110 11111222
Q ss_pred cCCc---ceEEEEECCC-CCEEEEEcCCCeEEEEECCCCCc-----eeeeeee------ecCCeeeEEEecC-CcEEEEE
Q 016982 202 LSFS---WAFGVKWSPS-GNTLAYVGHNSMIYFVDDVGPSP-----LAQNVAF------RDLPLRDVLFVSE-KMVIGVG 265 (379)
Q Consensus 202 ~~~~---~v~~~~~sp~-~~~l~~~~~d~~i~v~d~~~~~~-----~~~~~~~------~~~~i~~~~~s~~-~~~l~~~ 265 (379)
.+.. ....++..|. ...+++++.|..+++||.+.-.. .+..+.. ..-.|++++|+.+ +.+|++-
T Consensus 276 ~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSY 355 (559)
T KOG1334|consen 276 ADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASY 355 (559)
T ss_pred cCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeee
Confidence 2222 4678899995 44789999999999999765321 1112211 1235899999965 5677777
Q ss_pred eCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCccccccccccccccccc--ceeeeeee
Q 016982 266 FDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVN--CINCIVPL 343 (379)
Q Consensus 266 ~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~ 343 (379)
.|..|++|..+-. ....+... ... .....+ .++||.+ .|.++-||
T Consensus 356 nDe~IYLF~~~~~----~G~~p~~~---s~~-------~~~~k~-------------------vYKGHrN~~TVKgVNFf 402 (559)
T KOG1334|consen 356 NDEDIYLFNKSMG----DGSEPDPS---SPR-------EQYVKR-------------------VYKGHRNSRTVKGVNFF 402 (559)
T ss_pred cccceEEeccccc----cCCCCCCC---cch-------hhccch-------------------hhcccccccccceeeec
Confidence 8888888842211 00000000 000 001111 2478854 58888888
Q ss_pred cccCCcccceEEEeecCceEEEEeCCCccccccC
Q 016982 344 REAGSSRITRFTTSGLDGKIVTWDLESQEDLLNY 377 (379)
Q Consensus 344 ~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~~~~ 377 (379)
.|. ..|+++||+-|.|.||+-++++.++.+
T Consensus 403 GPr----sEyVvSGSDCGhIFiW~K~t~eii~~M 432 (559)
T KOG1334|consen 403 GPR----SEYVVSGSDCGHIFIWDKKTGEIIRFM 432 (559)
T ss_pred cCc----cceEEecCccceEEEEecchhHHHHHh
Confidence 654 489999999999999999999887654
No 204
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.80 E-value=2.3e-17 Score=136.93 Aligned_cols=222 Identities=15% Similarity=0.176 Sum_probs=150.3
Q ss_pred eeEEEeCCCCcEEEEEecCCeEEEEEecCCc--eEEE--EEeccCCCceEEEEE-----cCCCCEEEEEeCCCeEEEEec
Q 016982 13 ITCHAWSPDHAMVAFCPNNNEVHIYKLIQEK--WEKL--HVLQKHDQIVSGIDW-----SVRSNRIVTVSHDRNSYVWNQ 83 (379)
Q Consensus 13 i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~--~~~~--~~~~~~~~~v~~~~~-----~~~~~~l~~~~~d~~i~vw~~ 83 (379)
++...++-.|.+|+..-. ..+++|+...+. ..++ ..+.+- ...|-+| .|.+--++.+-.-|.+.+.|.
T Consensus 126 ~~~~~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~gt--~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp 202 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKGT--SPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDP 202 (636)
T ss_pred eeeccccCCCCEEEEecC-CeEEEEEccCcchhccchhhhcccCC--CCceecccccccCCCCcceEEeeccCceEEecc
Confidence 444455556677766533 478888887431 1111 112211 1223333 345656777777788988887
Q ss_pred cCCceeeeEEee--cCCCceeEEEECC-CCCEEEEEeCCCeEEEEEeecCCc--------------eeEEE---------
Q 016982 84 EGSEWVPTLVIL--RLNRAALCVQWSP-KENKFAVGSGAKTVCICYYEQENN--------------WWVSK--------- 137 (379)
Q Consensus 84 ~~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~--------------~~~~~--------- 137 (379)
...+....+... -.+..|+++.|-| +...++++-.+|.+++||.+.... ..+..
T Consensus 203 ~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNP 282 (636)
T KOG2394|consen 203 INFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNP 282 (636)
T ss_pred hhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCc
Confidence 654322222111 1347899999999 445677777799999997643210 00000
Q ss_pred --EEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCC
Q 016982 138 --LIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPS 215 (379)
Q Consensus 138 --~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 215 (379)
.. .-..+.|...+|+|||++||+.+.||.++|||. .+.+.+..+...-+...|++||||
T Consensus 283 v~~w-~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~f------------------dt~eLlg~mkSYFGGLLCvcWSPD 343 (636)
T KOG2394|consen 283 VARW-HIGEGSINEFAFSPDGKYLATVSQDGFLRIFDF------------------DTQELLGVMKSYFGGLLCVCWSPD 343 (636)
T ss_pred ccee-EeccccccceeEcCCCceEEEEecCceEEEeec------------------cHHHHHHHHHhhccceEEEEEcCC
Confidence 00 112447889999999999999999999999996 444555555555677999999999
Q ss_pred CCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEec
Q 016982 216 GNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVS 257 (379)
Q Consensus 216 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~ 257 (379)
|+|+++|++|.-|.||.+...+ ++..-++|...|..|+|.|
T Consensus 344 GKyIvtGGEDDLVtVwSf~erR-VVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 344 GKYIVTGGEDDLVTVWSFEERR-VVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ccEEEecCCcceEEEEEeccce-EEEeccccccceeeEeecc
Confidence 9999999999999999988765 6688889999999999987
No 205
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.80 E-value=7.1e-17 Score=140.85 Aligned_cols=278 Identities=11% Similarity=0.042 Sum_probs=185.1
Q ss_pred CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCC-CEEEEEeCCCeEEEEeccCCcee--e--eEEeecCCCceeEEEE
Q 016982 32 NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRS-NRIVTVSHDRNSYVWNQEGSEWV--P--TLVILRLNRAALCVQW 106 (379)
Q Consensus 32 g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~vw~~~~~~~~--~--~~~~~~~~~~v~~~~~ 106 (379)
+.+.+|++... ..+...+. ....|.++.|+|.. ++++.|..+|+|.+||+..+... . ......|..++..+.|
T Consensus 222 ~~~~vW~~~~p-~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 222 GVLLVWSLKNP-NTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred ceEEEEecCCC-CCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 47999999876 34555554 35689999999965 67788889999999999887642 1 1222457889999999
Q ss_pred CCCC--CEEEEEeCCCeEEEEEeecCCceeE---EEEEe-----ecCCcCEEEEEEcCCC-cEEEEeeCCCeEEEEeccc
Q 016982 107 SPKE--NKFAVGSGAKTVCICYYEQENNWWV---SKLIR-----KRHDSSVTSVAWHPNN-VFLATTSTDGKCRVFSTFI 175 (379)
Q Consensus 107 ~~~~--~~l~~~~~d~~v~i~~~~~~~~~~~---~~~~~-----~~~~~~v~~~~~~p~~-~~l~~~~~d~~i~v~d~~~ 175 (379)
-.+. .-+++++.||.|..|+++....... ..... ......+++++|.+.. +.++.|+++|.|.--+-.
T Consensus 300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~- 378 (555)
T KOG1587|consen 300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRK- 378 (555)
T ss_pred eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEecc-
Confidence 7643 4599999999999998875432000 00000 1223467899998854 789999999998764321
Q ss_pred cccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEE
Q 016982 176 KGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLF 255 (379)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~ 255 (379)
..+.... ...+.+..+..|.++|..+.++|=+..++..+.|.+++||........+..+..+...+++++|
T Consensus 379 ---g~~~~~~------~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaW 449 (555)
T KOG1587|consen 379 ---GYTPAPE------VSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAW 449 (555)
T ss_pred ---CCccccc------ccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEE
Confidence 1110000 1113344566788999999999976655555559999999876233233555556667999999
Q ss_pred ecCCc-EEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCccccccccccccccc
Q 016982 256 VSEKM-VIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTH 333 (379)
Q Consensus 256 s~~~~-~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 333 (379)
||... +++ +..+|.+.+|++.....--+. ...-+
T Consensus 450 SptrpavF~~~d~~G~l~iWDLl~~~~~Pv~--------------------------------------------s~~~~ 485 (555)
T KOG1587|consen 450 SPTRPAVFATVDGDGNLDIWDLLQDDEEPVL--------------------------------------------SQKVC 485 (555)
T ss_pred cCcCceEEEEEcCCCceehhhhhccccCCcc--------------------------------------------ccccc
Confidence 99754 333 556889998876542200000 00112
Q ss_pred ccceeeeeeecccCCcccceEEEeecCceEEEEeCCC
Q 016982 334 VNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLES 370 (379)
Q Consensus 334 ~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~ 370 (379)
..+.....+++.+ +.|+.|...|.+.+|++..
T Consensus 486 -~~~l~~~~~s~~g----~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 486 -SPALTRVRWSPNG----KLLAVGDANGTTHILKLSE 517 (555)
T ss_pred -ccccceeecCCCC----cEEEEecCCCcEEEEEcCc
Confidence 2333333377665 8999999999999999964
No 206
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.79 E-value=5.5e-18 Score=132.41 Aligned_cols=235 Identities=18% Similarity=0.204 Sum_probs=159.6
Q ss_pred CcccceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEE-EEEeCCCeEE
Q 016982 1 MAAIAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRI-VTVSHDRNSY 79 (379)
Q Consensus 1 m~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~ 79 (379)
|.-.+++...++ -++|||+|+++|++++- .+.|-|..+- +..+.+ ..-+.|.-+.|..|..++ .....++.|.
T Consensus 1 M~Fte~fk~~~~--~c~fSp~g~yiAs~~~y-rlviRd~~tl--q~~qlf-~cldki~yieW~ads~~ilC~~yk~~~vq 74 (447)
T KOG4497|consen 1 MDFTELFKSLNP--FCSFSPCGNYIASLSRY-RLVIRDSETL--QLHQLF-LCLDKIVYIEWKADSCHILCVAYKDPKVQ 74 (447)
T ss_pred CChHHHHHhcCC--ceeECCCCCeeeeeeee-EEEEeccchh--hHHHHH-HHHHHhhheeeeccceeeeeeeeccceEE
Confidence 333444444454 46899999999999764 7777776653 222222 224567889999888665 4556888999
Q ss_pred EEeccCCceeeeEEeecCCCceeEEEECCCCCEEEE-EeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcE
Q 016982 80 VWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAV-GSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVF 158 (379)
Q Consensus 80 vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 158 (379)
+|++...++...+ .....++..++|+|||+.++. ...+-.|.+|.+.+.. ...+ .-....+..++|+|||++
T Consensus 75 vwsl~Qpew~ckI--deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~----~~~~-~~pK~~~kg~~f~~dg~f 147 (447)
T KOG4497|consen 75 VWSLVQPEWYCKI--DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK----GYLL-PHPKTNVKGYAFHPDGQF 147 (447)
T ss_pred EEEeecceeEEEe--ccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce----eEEe-cccccCceeEEECCCCce
Confidence 9999999877766 567789999999999965554 5558899999999876 3333 333455689999999999
Q ss_pred EEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCc
Q 016982 159 LATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSP 238 (379)
Q Consensus 159 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~ 238 (379)
.+..++-.....+.+.. .+....+..+....-..+.+.|+|||..|++ ||-.-...
T Consensus 148 ~ai~sRrDCkdyv~i~~---------------c~~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Leyk 203 (447)
T KOG4497|consen 148 CAILSRRDCKDYVQISS---------------CKAWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEYK 203 (447)
T ss_pred eeeeecccHHHHHHHHh---------------hHHHHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhhe
Confidence 88887643222221100 1233445555555666889999999998874 54221111
Q ss_pred eeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEE
Q 016982 239 LAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFA 274 (379)
Q Consensus 239 ~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~ 274 (379)
+ .....+..+..++|+|.+++|+ +++|+.+++.+
T Consensus 204 v--~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 204 V--YAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred e--eeeeeccceeEEEeccccceEEeeccchhhhhhc
Confidence 0 1122245688899999999999 66888888755
No 207
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.79 E-value=4.3e-16 Score=136.30 Aligned_cols=206 Identities=15% Similarity=0.118 Sum_probs=136.7
Q ss_pred eEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEe---CCCeEEEEeccCCceeeeEEeecCCCceeEEEECCC
Q 016982 33 EVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVS---HDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPK 109 (379)
Q Consensus 33 ~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 109 (379)
.|.++|.+..+. +.+..+...+.+.+|+|||+.|+..+ .+..+.+|++.+++..... ...+.+..+.|+||
T Consensus 180 ~l~~~d~dg~~~---~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~---~~~~~~~~~~~SPD 253 (429)
T PRK03629 180 ELRVSDYDGYNQ---FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA---SFPRHNGAPAFSPD 253 (429)
T ss_pred eEEEEcCCCCCC---EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc---CCCCCcCCeEECCC
Confidence 788888876532 33344567899999999999988754 2357999999888643322 23344567899999
Q ss_pred CCEEEEE-eCCC--eEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC-CCeEEEEeccccccccccccC
Q 016982 110 ENKFAVG-SGAK--TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST-DGKCRVFSTFIKGVDIKEKKE 185 (379)
Q Consensus 110 ~~~l~~~-~~d~--~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~ 185 (379)
|+.|+.. +.++ .|++||++++. .+.+ ..+...+....|+|||+.|+..+. ++...||.+.
T Consensus 254 G~~La~~~~~~g~~~I~~~d~~tg~----~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d----------- 317 (429)
T PRK03629 254 GSKLAFALSKTGSLNLYVMDLASGQ----IRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVN----------- 317 (429)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCC----EEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEE-----------
Confidence 9988865 3344 48888887765 2333 344456788999999998887765 3455565431
Q ss_pred CCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCC---CeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEE
Q 016982 186 GTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHN---SMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVI 262 (379)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 262 (379)
...+ ....+.........+.|+|||++|+..+.+ ..|.+||+.++.. ..+.. ........|+|||++|
T Consensus 318 -----~~~g-~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~--~~Lt~-~~~~~~p~~SpDG~~i 388 (429)
T PRK03629 318 -----INGG-APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLTD-TFLDETPSIAPNGTMV 388 (429)
T ss_pred -----CCCC-CeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe--EEeCC-CCCCCCceECCCCCEE
Confidence 0222 223333333445678999999998876543 3688899887652 33332 2234578999999988
Q ss_pred E-EEeCCC
Q 016982 263 G-VGFDCN 269 (379)
Q Consensus 263 ~-~~~d~~ 269 (379)
+ ++.++.
T Consensus 389 ~~~s~~~~ 396 (429)
T PRK03629 389 IYSSSQGM 396 (429)
T ss_pred EEEEcCCC
Confidence 8 444443
No 208
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=2.3e-16 Score=124.96 Aligned_cols=233 Identities=13% Similarity=0.150 Sum_probs=162.2
Q ss_pred CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEecc-CCCceEEEEEcCCC-CEEEEEeCCCeEEEEeccCCc
Q 016982 10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQK-HDQIVSGIDWSVRS-NRIVTVSHDRNSYVWNQEGSE 87 (379)
Q Consensus 10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~d~~i~vw~~~~~~ 87 (379)
+..+..++|++.-..+|++..|-.|++|+-+.. ....++. ....|++++|-|.+ ..|+.|... -|.+|.....-
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst---~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tl 173 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSST---CPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTL 173 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCC---CCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccc
Confidence 346788999997778899999999999998764 3333432 24579999999976 567777765 48999764321
Q ss_pred ------------eeeeEEeecCCCceeEEEECCCCCEEEEEeC-CCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcC
Q 016982 88 ------------WVPTLVILRLNRAALCVQWSPKENKFAVGSG-AKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHP 154 (379)
Q Consensus 88 ------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 154 (379)
....+...+ ..+|+++.|++||..+++++. |..|.|||.+++.. ..+.....+.+.-+.|+|
T Consensus 174 n~~r~~~~~s~~~~qvl~~pg-h~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~----~pL~~~glgg~slLkwSP 248 (445)
T KOG2139|consen 174 NANRNIRMMSTHHLQVLQDPG-HNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQK----IPLIPKGLGGFSLLKWSP 248 (445)
T ss_pred ccccccccccccchhheeCCC-CceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCc----ccccccCCCceeeEEEcC
Confidence 111222222 368999999999999999886 67899999999873 223134557788999999
Q ss_pred CCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECC
Q 016982 155 NNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDV 234 (379)
Q Consensus 155 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~ 234 (379)
|+.+|..++-|+..++|+. .++........+ .+.|....|+|+|++|+.+.. |.-++|.+.
T Consensus 249 dgd~lfaAt~davfrlw~e-----------------~q~wt~erw~lg-sgrvqtacWspcGsfLLf~~s-gsp~lysl~ 309 (445)
T KOG2139|consen 249 DGDVLFAATCDAVFRLWQE-----------------NQSWTKERWILG-SGRVQTACWSPCGSFLLFACS-GSPRLYSLT 309 (445)
T ss_pred CCCEEEEecccceeeeehh-----------------cccceecceecc-CCceeeeeecCCCCEEEEEEc-CCceEEEEe
Confidence 9999999999999999964 133333333333 458999999999998776542 333444332
Q ss_pred CCCc--------------eeeee------ee---ecCCeeeEEEecCCcEEEEEeCCCe
Q 016982 235 GPSP--------------LAQNV------AF---RDLPLRDVLFVSEKMVIGVGFDCNP 270 (379)
Q Consensus 235 ~~~~--------------~~~~~------~~---~~~~i~~~~~s~~~~~l~~~~d~~~ 270 (379)
-..+ ++..+ .+ -.+++.+++|.|.|.+||+...+.-
T Consensus 310 f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 310 FDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred ecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence 1110 00000 01 1456889999999999998776654
No 209
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.78 E-value=2.1e-18 Score=140.50 Aligned_cols=232 Identities=9% Similarity=0.108 Sum_probs=187.6
Q ss_pred ceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeee
Q 016982 12 CITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPT 91 (379)
Q Consensus 12 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~ 91 (379)
..+.+.++.+|+.|+.|+..|.|-.+|..+. .....+. -...|.++.|..+.+++|++- ...++|||-..-+.-+.
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~--~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~GtElHCl 206 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTK--KLHFEIN-VMETVRDVTFLHNEQFFAVAQ-KKYVYVYDNNGTELHCL 206 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccc--eeeeeee-hhhhhhhhhhhcchHHHHhhh-hceEEEecCCCcEEeeh
Confidence 4567899999999999999999999999997 4444443 245788999998888888765 46899999765543222
Q ss_pred EEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEE
Q 016982 92 LVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVF 171 (379)
Q Consensus 92 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~ 171 (379)
....+|..+.|-|..-+|++++..|.++.-|+.+++ +...+ ..-.+.+..++-+|-+..+-+|..+|+|.+|
T Consensus 207 ----k~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gk---lVa~~-~t~~G~~~vm~qNP~NaVih~GhsnGtVSlW 278 (545)
T KOG1272|consen 207 ----KRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGK---LVASI-RTGAGRTDVMKQNPYNAVIHLGHSNGTVSLW 278 (545)
T ss_pred ----hhcCchhhhcccchhheeeecccCCceEEEeechhh---hhHHH-HccCCccchhhcCCccceEEEcCCCceEEec
Confidence 234688999999999999999999999999999987 34444 4456778888899999999999999999999
Q ss_pred eccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCee
Q 016982 172 STFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLR 251 (379)
Q Consensus 172 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~ 251 (379)
.. ...+++..+-.|.++|.++++.++|+|+++++.|..++|||+++-.++ .++.. ..+..
T Consensus 279 SP------------------~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql-~t~~t-p~~a~ 338 (545)
T KOG1272|consen 279 SP------------------NSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQL-HTYRT-PHPAS 338 (545)
T ss_pred CC------------------CCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccccc-ceeec-CCCcc
Confidence 85 667778888899999999999999999999999999999999987755 33332 45667
Q ss_pred eEEEecCCcEEEEEeCCCeEEEEec
Q 016982 252 DVLFVSEKMVIGVGFDCNPMVFAAD 276 (379)
Q Consensus 252 ~~~~s~~~~~l~~~~d~~~~i~~~~ 276 (379)
.+++|.. .+||++....+.+|...
T Consensus 339 ~ls~Sqk-glLA~~~G~~v~iw~d~ 362 (545)
T KOG1272|consen 339 NLSLSQK-GLLALSYGDHVQIWKDA 362 (545)
T ss_pred ccccccc-cceeeecCCeeeeehhh
Confidence 7888764 46778888889998743
No 210
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.78 E-value=3.3e-16 Score=137.17 Aligned_cols=205 Identities=15% Similarity=0.164 Sum_probs=135.5
Q ss_pred CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC---CeEEEEeccCCceeeeEEeecCCCceeEEEECC
Q 016982 32 NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD---RNSYVWNQEGSEWVPTLVILRLNRAALCVQWSP 108 (379)
Q Consensus 32 g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~ 108 (379)
..|.++|.... ....+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++.... ....+.+...+|+|
T Consensus 176 ~~L~~~D~dG~---~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l---~~~~g~~~~~~~SP 249 (427)
T PRK02889 176 YQLQISDADGQ---NAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV---ANFKGSNSAPAWSP 249 (427)
T ss_pred cEEEEECCCCC---CceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe---ecCCCCccceEECC
Confidence 35777776543 333445667789999999999999877643 3599999998874332 23345667899999
Q ss_pred CCCEEEE-EeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC-CCeEEEEeccccccccccccCC
Q 016982 109 KENKFAV-GSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST-DGKCRVFSTFIKGVDIKEKKEG 186 (379)
Q Consensus 109 ~~~~l~~-~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~ 186 (379)
||+.|+. .+.++...+|.++.... ..+.+ ..+........|+|||+.|+..+. ++...+|.+.
T Consensus 250 DG~~la~~~~~~g~~~Iy~~d~~~~--~~~~l-t~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~------------ 314 (427)
T PRK02889 250 DGRTLAVALSRDGNSQIYTVNADGS--GLRRL-TQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMP------------ 314 (427)
T ss_pred CCCEEEEEEccCCCceEEEEECCCC--CcEEC-CCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEE------------
Confidence 9998875 56688877777654321 12333 345555667899999998886654 4667777651
Q ss_pred CccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCC---eEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE
Q 016982 187 TSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNS---MIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG 263 (379)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~---~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 263 (379)
...+. ...+..........+|+|+|++|+..+.++ .|.+||+.++.. ..+.. ......+.|+|||+.|+
T Consensus 315 ----~~~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~--~~lt~-~~~~~~p~~spdg~~l~ 386 (427)
T PRK02889 315 ----ASGGA-AQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV--TALTD-TTRDESPSFAPNGRYIL 386 (427)
T ss_pred ----CCCCc-eEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe--EEccC-CCCccCceECCCCCEEE
Confidence 01121 222222223344689999999998776544 699999887653 23332 23346789999999887
Q ss_pred EE
Q 016982 264 VG 265 (379)
Q Consensus 264 ~~ 265 (379)
..
T Consensus 387 ~~ 388 (427)
T PRK02889 387 YA 388 (427)
T ss_pred EE
Confidence 43
No 211
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=3.4e-16 Score=117.42 Aligned_cols=200 Identities=8% Similarity=-0.002 Sum_probs=147.3
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEeccCC--------ceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEe
Q 016982 56 IVSGIDWSVRSNRIVTVSHDRNSYVWNQEGS--------EWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYY 127 (379)
Q Consensus 56 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~ 127 (379)
.|.+-+|+|.+++|+.|..+|.|.+..+.+- ...+.+...+|.++++.++|+ ..+|++++ ||.|+-|.+
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence 4566789999999999999999999987532 112334447899999999998 44667766 599999988
Q ss_pred ecCCc-------eeEEEEEee--cCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEE
Q 016982 128 EQENN-------WWVSKLIRK--RHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQIL 198 (379)
Q Consensus 128 ~~~~~-------~~~~~~~~~--~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (379)
+.... |....+... ..-..|+++-..|..+-+++++.|+.++-||+ ++++..+
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dl------------------E~G~i~r 150 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDL------------------EDGRIQR 150 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEe------------------cCCEEEE
Confidence 65432 111111100 11236789999998888888889999999997 8899999
Q ss_pred EeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeec----------CCeeeEEEecCCcEEEEEeCC
Q 016982 199 QLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRD----------LPLRDVLFVSEKMVIGVGFDC 268 (379)
Q Consensus 199 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~----------~~i~~~~~s~~~~~l~~~~d~ 268 (379)
++++|...+.++.--.....+++|++||++++||.++.+.. +.+.... ..|.++ .-+..++++|..-
T Consensus 151 ~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v-~~ie~yk~~~~lRp~~g~wigal--a~~edWlvCGgGp 227 (325)
T KOG0649|consen 151 EYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHV-SMIEPYKNPNLLRPDWGKWIGAL--AVNEDWLVCGGGP 227 (325)
T ss_pred EEcCCcceeeeeeecccCcceeecCCCccEEEEecccccee-EEeccccChhhcCcccCceeEEE--eccCceEEecCCC
Confidence 99999999999998555556889999999999999987643 4443211 123333 3466788998888
Q ss_pred CeEEEEecCCC
Q 016982 269 NPMVFAADETG 279 (379)
Q Consensus 269 ~~~i~~~~~~~ 279 (379)
.+.+|.+....
T Consensus 228 ~lslwhLrsse 238 (325)
T KOG0649|consen 228 KLSLWHLRSSE 238 (325)
T ss_pred ceeEEeccCCC
Confidence 99999877654
No 212
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.77 E-value=2.6e-16 Score=138.34 Aligned_cols=220 Identities=16% Similarity=0.206 Sum_probs=146.6
Q ss_pred ceeccCcceeEEEeCCCCcEEEEEec---CCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEE-EEeCCC--eE
Q 016982 5 AVHQFAQCITCHAWSPDHAMVAFCPN---NNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIV-TVSHDR--NS 78 (379)
Q Consensus 5 ~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~--~i 78 (379)
.+..+...+.+.+|+|||+.|++.+. +..|++|++.+++...+.. ..+...+++|+|+|+.|+ +.+.++ .|
T Consensus 198 ~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~---~~g~~~~~~~SpDG~~l~~~~s~~g~~~I 274 (433)
T PRK04922 198 TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVAS---FRGINGAPSFSPDGRRLALTLSRDGNPEI 274 (433)
T ss_pred EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEecc---CCCCccCceECCCCCEEEEEEeCCCCceE
Confidence 45667778999999999999998764 3469999998874333333 334455789999998775 445555 59
Q ss_pred EEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeC-CCe--EEEEEeecCCceeEEEEEeecCCcCEEEEEEcCC
Q 016982 79 YVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSG-AKT--VCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPN 155 (379)
Q Consensus 79 ~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~--v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 155 (379)
++||+.+++.... ..+.......+|+|||+.|+..+. ++. |+++++..+. .+.+ ..+......++|+|+
T Consensus 275 y~~d~~~g~~~~l---t~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~----~~~l-t~~g~~~~~~~~SpD 346 (433)
T PRK04922 275 YVMDLGSRQLTRL---TNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS----AERL-TFQGNYNARASVSPD 346 (433)
T ss_pred EEEECCCCCeEEC---ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC----eEEe-ecCCCCccCEEECCC
Confidence 9999988874332 334445577899999998887764 455 4444544444 2223 223334457899999
Q ss_pred CcEEEEeeCCC---eEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCC---CeEE
Q 016982 156 NVFLATTSTDG---KCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHN---SMIY 229 (379)
Q Consensus 156 ~~~l~~~~~d~---~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~~i~ 229 (379)
|++++..+.++ .|.+||+ ..++.. .+.. ......+.|+|||++++..+.+ ..|.
T Consensus 347 G~~Ia~~~~~~~~~~I~v~d~------------------~~g~~~-~Lt~-~~~~~~p~~spdG~~i~~~s~~~g~~~L~ 406 (433)
T PRK04922 347 GKKIAMVHGSGGQYRIAVMDL------------------STGSVR-TLTP-GSLDESPSFAPNGSMVLYATREGGRGVLA 406 (433)
T ss_pred CCEEEEEECCCCceeEEEEEC------------------CCCCeE-ECCC-CCCCCCceECCCCCEEEEEEecCCceEEE
Confidence 99988765433 5889986 233322 3322 2234567999999988876643 4688
Q ss_pred EEECCCCCceeeeeeeecCCeeeEEEec
Q 016982 230 FVDDVGPSPLAQNVAFRDLPLRDVLFVS 257 (379)
Q Consensus 230 v~d~~~~~~~~~~~~~~~~~i~~~~~s~ 257 (379)
++++.... .+.+..+.+.+..++|+|
T Consensus 407 ~~~~~g~~--~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 407 AVSTDGRV--RQRLVSADGEVREPAWSP 432 (433)
T ss_pred EEECCCCc--eEEcccCCCCCCCCccCC
Confidence 88875533 344544556677888876
No 213
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.77 E-value=9e-16 Score=121.90 Aligned_cols=194 Identities=14% Similarity=0.226 Sum_probs=146.5
Q ss_pred ceeEEEeCCCCcEEEEEecC--CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCcee
Q 016982 12 CITCHAWSPDHAMVAFCPNN--NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWV 89 (379)
Q Consensus 12 ~i~~~~~s~~~~~l~~~~~d--g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~ 89 (379)
.|-.+-|+. .++|..+.+ ..+++++.+.+. .+..+. ...+|.++.++. ++|+++-.+ .|+|||+.+.+..
T Consensus 48 ~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~--~ICe~~-fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklL 119 (391)
T KOG2110|consen 48 SIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKT--TICEIF-FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLL 119 (391)
T ss_pred EEEEeeccc--ceeEEEecCCCceEEEEEcccCc--eEEEEe-cCCceEEEEEcc--ceEEEEEcc-cEEEEecccceee
Confidence 344455554 344444432 457888877652 332222 345788998874 467666654 4999999999887
Q ss_pred eeEEee-cCCCceeEEEECCCCCEEEEEeC--CCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCC
Q 016982 90 PTLVIL-RLNRAALCVQWSPKENKFAVGSG--AKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDG 166 (379)
Q Consensus 90 ~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~--d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~ 166 (379)
..+... .+...+.++++++.+.+++.-+. .|.|.+||..+-+ ....+ ..|.+.+.+++|+++|.+|||+++.|
T Consensus 120 hTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~---~v~~I-~aH~~~lAalafs~~G~llATASeKG 195 (391)
T KOG2110|consen 120 HTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ---PVNTI-NAHKGPLAALAFSPDGTLLATASEKG 195 (391)
T ss_pred hhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccce---eeeEE-EecCCceeEEEECCCCCEEEEeccCc
Confidence 777655 45566888888888888887543 6899999998877 35556 79999999999999999999999998
Q ss_pred e-EEEEeccccccccccccCCCccCCcccceEEEeecCC--cceEEEEECCCCCEEEEEcCCCeEEEEECCC
Q 016982 167 K-CRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSF--SWAFGVKWSPSGNTLAYVGHNSMIYFVDDVG 235 (379)
Q Consensus 167 ~-i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~ 235 (379)
+ |||+.+ +.++.+.+|+-.. ..|.+++|+|++++|++.+..++|++|.+..
T Consensus 196 TVIRVf~v------------------~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 196 TVIRVFSV------------------PEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred eEEEEEEc------------------CCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 7 789987 7788888886432 3588999999999999999999999998754
No 214
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.77 E-value=4.9e-16 Score=136.79 Aligned_cols=219 Identities=15% Similarity=0.216 Sum_probs=148.5
Q ss_pred ceeccCcceeEEEeCCCCcEEEEEec---CCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEE-EEeCCCe--E
Q 016982 5 AVHQFAQCITCHAWSPDHAMVAFCPN---NNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIV-TVSHDRN--S 78 (379)
Q Consensus 5 ~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~--i 78 (379)
.+..|...+.+.+|+|||+.|+..+. +..|++||+.+++.+ .+..+.+.+...+|+|||+.|+ +.+.++. |
T Consensus 196 ~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~---~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 272 (435)
T PRK05137 196 YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE---LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDI 272 (435)
T ss_pred EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE---EeecCCCcccCcEECCCCCEEEEEEecCCCceE
Confidence 35667889999999999999988764 468999999887433 3444556778899999998875 4455554 7
Q ss_pred EEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeC-CC--eEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCC
Q 016982 79 YVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSG-AK--TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPN 155 (379)
Q Consensus 79 ~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 155 (379)
.+||+.+++... +..+........|+|||+.|+..+. ++ .|+++|+..+. .+.+ ..+...+....|+|+
T Consensus 273 y~~d~~~~~~~~---Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~----~~~l-t~~~~~~~~~~~Spd 344 (435)
T PRK05137 273 YTMDLRSGTTTR---LTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN----PRRI-SFGGGRYSTPVWSPR 344 (435)
T ss_pred EEEECCCCceEE---ccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC----eEEe-ecCCCcccCeEECCC
Confidence 778988876432 2345556678999999998888764 33 56676766554 2333 234455677899999
Q ss_pred CcEEEEeeCC---CeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCC------C
Q 016982 156 NVFLATTSTD---GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHN------S 226 (379)
Q Consensus 156 ~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d------~ 226 (379)
|++|+....+ ..|.+||+. +.....+.. ...+..+.|+|||+.|+..+.+ .
T Consensus 345 G~~ia~~~~~~~~~~i~~~d~~-------------------~~~~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~ 404 (435)
T PRK05137 345 GDLIAFTKQGGGQFSIGVMKPD-------------------GSGERILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAP 404 (435)
T ss_pred CCEEEEEEcCCCceEEEEEECC-------------------CCceEeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcc
Confidence 9999877643 357777751 112222222 2246678999999998775532 3
Q ss_pred eEEEEECCCCCceeeeeeeecCCeeeEEEec
Q 016982 227 MIYFVDDVGPSPLAQNVAFRDLPLRDVLFVS 257 (379)
Q Consensus 227 ~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~ 257 (379)
.++++|+.+... ..+. ....+...+|+|
T Consensus 405 ~L~~~dl~g~~~--~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 405 KLYTVDLTGRNE--REVP-TPGDASDPAWSP 432 (435)
T ss_pred eEEEEECCCCce--EEcc-CCCCccCcccCC
Confidence 688888866543 3443 244567778876
No 215
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.77 E-value=1.3e-15 Score=119.28 Aligned_cols=256 Identities=16% Similarity=0.161 Sum_probs=163.3
Q ss_pred CcceeEEEeCCCCcEEEE-EecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEE-EEEeCCCeEEEEeccCCc
Q 016982 10 AQCITCHAWSPDHAMVAF-CPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRI-VTVSHDRNSYVWNQEGSE 87 (379)
Q Consensus 10 ~~~i~~~~~s~~~~~l~~-~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~vw~~~~~~ 87 (379)
-+.|.-+.|..|.-+++. ...++.|.+|++... +-...+.....++.++.|||||+.| .+...+-.|.+|.+.+.+
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp--ew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~ 125 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP--EWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK 125 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeecc--eeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce
Confidence 466778889888766654 456889999999987 4455666677899999999999654 566678899999999876
Q ss_pred eeeeEEeecCCCceeEEEECCCCCEEEEEeC------------------------------------CCeEEEEEeecCC
Q 016982 88 WVPTLVILRLNRAALCVQWSPKENKFAVGSG------------------------------------AKTVCICYYEQEN 131 (379)
Q Consensus 88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------------------------d~~v~i~~~~~~~ 131 (379)
.... .-.+..+..++|+|||++.+.++. +..+-+||--..-
T Consensus 126 ~~~~---~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Ley 202 (447)
T KOG4497|consen 126 GYLL---PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEY 202 (447)
T ss_pred eEEe---cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhh
Confidence 3222 223456688999999998877763 2223334322211
Q ss_pred ceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccc----------------------cc----------
Q 016982 132 NWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKG----------------------VD---------- 179 (379)
Q Consensus 132 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~----------------------~~---------- 179 (379)
+.+.....-.+..++|+|.+++|+.|+.|+.+++.+-.+.. .+
T Consensus 203 -----kv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cL 277 (447)
T KOG4497|consen 203 -----KVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCL 277 (447)
T ss_pred -----eeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhccccc
Confidence 11112233568899999999999999999999886632100 00
Q ss_pred -ccc---ccCCCcc------CCcccceEEE------eecCCcceEEEEECCCCCEEEEEcC--CCeEEEEECCCCCceee
Q 016982 180 -IKE---KKEGTSS------DTKFGEQILQ------LDLSFSWAFGVKWSPSGNTLAYVGH--NSMIYFVDDVGPSPLAQ 241 (379)
Q Consensus 180 -~~~---~~~~~~~------~~~~~~~~~~------~~~~~~~v~~~~~sp~~~~l~~~~~--d~~i~v~d~~~~~~~~~ 241 (379)
+.+ +...... .......+.. +......+.-++|++|..++++-.. -+.+-+||++..+ + .
T Consensus 278 sf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~-l-~ 355 (447)
T KOG4497|consen 278 SFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK-L-H 355 (447)
T ss_pred ccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh-h-h
Confidence 000 0000000 0000111111 1122335778999999999988643 3579999998765 2 2
Q ss_pred eeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecC
Q 016982 242 NVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADE 277 (379)
Q Consensus 242 ~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~ 277 (379)
.+-....+|....|.|....|+ +.....+++|....
T Consensus 356 avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg 392 (447)
T KOG4497|consen 356 AVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG 392 (447)
T ss_pred hhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCC
Confidence 2333467899999999765444 55555677776544
No 216
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=1.7e-15 Score=133.46 Aligned_cols=200 Identities=14% Similarity=0.180 Sum_probs=138.4
Q ss_pred CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeC---CCeEEEEeccCCceeeeEEeecCCCceeEEEECC
Q 016982 32 NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSH---DRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSP 108 (379)
Q Consensus 32 g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~ 108 (379)
..|.++|..+. ....+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++... +..+.+.+...+|+|
T Consensus 182 ~~l~~~d~dg~---~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~---l~~~~g~~~~~~~SP 255 (435)
T PRK05137 182 KRLAIMDQDGA---NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL---VGNFPGMTFAPRFSP 255 (435)
T ss_pred eEEEEECCCCC---CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE---eecCCCcccCcEECC
Confidence 37888888664 33455667789999999999999888763 4679999999886432 234566778899999
Q ss_pred CCCEEEE-EeCCCe--EEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC-CC--eEEEEecccccccccc
Q 016982 109 KENKFAV-GSGAKT--VCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST-DG--KCRVFSTFIKGVDIKE 182 (379)
Q Consensus 109 ~~~~l~~-~~~d~~--v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~ 182 (379)
||+.|+. .+.++. |++||+.++. .+.+ ..+........|+|||+.|+..+. +| .|.++|+
T Consensus 256 DG~~la~~~~~~g~~~Iy~~d~~~~~----~~~L-t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~--------- 321 (435)
T PRK05137 256 DGRKVVMSLSQGGNTDIYTMDLRSGT----TTRL-TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNA--------- 321 (435)
T ss_pred CCCEEEEEEecCCCceEEEEECCCCc----eEEc-cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEEC---------
Confidence 9998764 455555 6666766654 3334 455556678999999998887764 33 5667764
Q ss_pred ccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCC---CeEEEEECCCCCceeeeeeeecCCeeeEEEecCC
Q 016982 183 KKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHN---SMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEK 259 (379)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~ 259 (379)
. +.....+..+...+..+.|+|+|++|+..+.+ ..|.+||+.+... ..+. ....+..+.|+|||
T Consensus 322 ---------~-g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~--~~lt-~~~~~~~p~~spDG 388 (435)
T PRK05137 322 ---------D-GSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE--RILT-SGFLVEGPTWAPNG 388 (435)
T ss_pred ---------C-CCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce--Eecc-CCCCCCCCeECCCC
Confidence 2 22233343334556778999999999876543 3688889765432 3332 23356789999999
Q ss_pred cEEEE
Q 016982 260 MVIGV 264 (379)
Q Consensus 260 ~~l~~ 264 (379)
+.|+.
T Consensus 389 ~~i~~ 393 (435)
T PRK05137 389 RVIMF 393 (435)
T ss_pred CEEEE
Confidence 98873
No 217
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.76 E-value=1.2e-15 Score=138.50 Aligned_cols=222 Identities=15% Similarity=0.095 Sum_probs=153.6
Q ss_pred EEecCCceEEEEEeccCCCceEEEEEcCCC-CEEEEEeCCCeEEEEeccCC-----ceeeeEEeecCCCceeEEEECCCC
Q 016982 37 YKLIQEKWEKLHVLQKHDQIVSGIDWSVRS-NRIVTVSHDRNSYVWNQEGS-----EWVPTLVILRLNRAALCVQWSPKE 110 (379)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~vw~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~ 110 (379)
|+.++ ..+..+..|...+..++.++.. .++++|+.||+|++|+...- ..............+.++...+.+
T Consensus 1034 W~p~G---~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~ 1110 (1431)
T KOG1240|consen 1034 WNPRG---ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG 1110 (1431)
T ss_pred CCccc---eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC
Confidence 55443 6888888999999999988766 89999999999999998542 222333334467889999999999
Q ss_pred CEEEEEeCCCeEEEEEeecCCc--ee--EEEEEeecCCcCEE-EEEEcCC-C-cEEEEeeCCCeEEEEeccccccccccc
Q 016982 111 NKFAVGSGAKTVCICYYEQENN--WW--VSKLIRKRHDSSVT-SVAWHPN-N-VFLATTSTDGKCRVFSTFIKGVDIKEK 183 (379)
Q Consensus 111 ~~l~~~~~d~~v~i~~~~~~~~--~~--~~~~~~~~~~~~v~-~~~~~p~-~-~~l~~~~~d~~i~v~d~~~~~~~~~~~ 183 (379)
+.+|+++.||.|++.+++.... .. ..+.......+.+. .-+|... + ..++.+...+.|..||+.
T Consensus 1111 ~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r--------- 1181 (1431)
T KOG1240|consen 1111 DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTR--------- 1181 (1431)
T ss_pred CeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecch---------
Confidence 9999999999999998876321 00 11111011223333 3333322 2 378888889999999973
Q ss_pred cCCCccCCcccceE--EEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecC---
Q 016982 184 KEGTSSDTKFGEQI--LQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSE--- 258 (379)
Q Consensus 184 ~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~--- 258 (379)
..... .......+.|++++.+|.+.+++.|...|.+.+||++-+.+....-.++..+++.+..+|-
T Consensus 1182 ---------~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~ 1252 (1431)
T KOG1240|consen 1182 ---------MRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQ 1252 (1431)
T ss_pred ---------hhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCC
Confidence 11111 1223346789999999999999999999999999998876543333345678888888773
Q ss_pred CcEEE-EE--eCCCeEEEEecCCC
Q 016982 259 KMVIG-VG--FDCNPMVFAADETG 279 (379)
Q Consensus 259 ~~~l~-~~--~d~~~~i~~~~~~~ 279 (379)
....+ ++ ..+.+.+|+...+.
T Consensus 1253 ~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1253 ESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred CceEEEecccCCCceeeeecccCc
Confidence 23444 33 45678888877653
No 218
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=1.1e-15 Score=128.08 Aligned_cols=283 Identities=14% Similarity=0.095 Sum_probs=194.7
Q ss_pred eccCcceeEEEeCCCCcEE-EEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccC
Q 016982 7 HQFAQCITCHAWSPDHAMV-AFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEG 85 (379)
Q Consensus 7 ~~~~~~i~~~~~s~~~~~l-~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~ 85 (379)
+.|...-+.|..+|||+|+ |+|.+.-.|++||+.+-..+..+.+. ...|.-.-.+.|-..++.-..|.+|.+...-.
T Consensus 48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlD--ae~V~feiLsDD~SK~v~L~~DR~IefHak~G 125 (703)
T KOG2321|consen 48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLD--AEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG 125 (703)
T ss_pred cCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeeccc--ccceeEEEeccchhhheEeecCceeeehhhcC
Confidence 5678888999999999976 67778899999999874323222222 22444444555555666667788887765433
Q ss_pred CceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCC
Q 016982 86 SEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTD 165 (379)
Q Consensus 86 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d 165 (379)
.. ... .-+..-.+++++.-..-|++++....|+=++++.+. ...++ ....+.++++..++-..+|++|+.+
T Consensus 126 ~h--y~~---RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGr---fL~P~-~~~~~~lN~v~in~~hgLla~Gt~~ 196 (703)
T KOG2321|consen 126 RH--YRT---RIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGR---FLNPF-ETDSGELNVVSINEEHGLLACGTED 196 (703)
T ss_pred ee--eee---ecCcCCccccccCCCccEEEeecCcceEEEEccccc---ccccc-ccccccceeeeecCccceEEecccC
Confidence 22 111 123445667776544445555545567777777776 45555 4556889999999999999999999
Q ss_pred CeEEEEeccccccccccccCCCccCCcccceEEEe------ecCC-----cceEEEEECCCCCEEEEEcCCCeEEEEECC
Q 016982 166 GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL------DLSF-----SWAFGVKWSPSGNTLAYVGHNSMIYFVDDV 234 (379)
Q Consensus 166 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-----~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~ 234 (379)
|.|..||.+ ....+..+ ..|. ..|+++.|+.+|-.+++|..+|.+.|||++
T Consensus 197 g~VEfwDpR------------------~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLR 258 (703)
T KOG2321|consen 197 GVVEFWDPR------------------DKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLR 258 (703)
T ss_pred ceEEEecch------------------hhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcc
Confidence 999999963 22222222 2222 249999999999999999999999999999
Q ss_pred CCCceeeeeeeecCCeeeEEEecC--CcEEEEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeec
Q 016982 235 GPSPLAQNVAFRDLPLRDVLFVSE--KMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYG 312 (379)
Q Consensus 235 ~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (379)
..++++..-.....+|..+.|.+. +..|++.....++||+...+.....+.
T Consensus 259 a~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE--------------------------- 311 (703)
T KOG2321|consen 259 ASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIE--------------------------- 311 (703)
T ss_pred cCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeecc---------------------------
Confidence 988765554445678999999875 456777777788898866554333221
Q ss_pred cccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCC
Q 016982 313 QSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLES 370 (379)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~ 370 (379)
....++.+++++.. .+|.+|-+++.+..|=+..
T Consensus 312 --------------------pt~~lND~C~~p~s-----Gm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 312 --------------------PTSDLNDFCFVPGS-----GMFFTANESSKMHTYYIPS 344 (703)
T ss_pred --------------------ccCCcCceeeecCC-----ceEEEecCCCcceeEEccc
Confidence 22347888866433 5888998888877776554
No 219
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=6e-16 Score=135.54 Aligned_cols=223 Identities=18% Similarity=0.209 Sum_probs=145.2
Q ss_pred ceeccCcceeEEEeCCCCcEEEEEecC---CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEE-EEeCCCeEEE
Q 016982 5 AVHQFAQCITCHAWSPDHAMVAFCPNN---NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIV-TVSHDRNSYV 80 (379)
Q Consensus 5 ~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~v 80 (379)
.+..+...+.+.+|+|||+.|++.+.+ ..|++||+.+++...+.. ..+.+.+.+|+|||+.|+ +.+.++...+
T Consensus 190 ~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~---~~g~~~~~~~SPDG~~la~~~~~~g~~~I 266 (427)
T PRK02889 190 SALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVAN---FKGSNSAPAWSPDGRTLAVALSRDGNSQI 266 (427)
T ss_pred EeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeec---CCCCccceEECCCCCEEEEEEccCCCceE
Confidence 345677889999999999999887643 469999998874333332 334556899999998886 4567777566
Q ss_pred Ee--ccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeC-CCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCc
Q 016982 81 WN--QEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSG-AKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNV 157 (379)
Q Consensus 81 w~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 157 (379)
|. +.++.. . .+..+........|+|||+.|+..+. ++...+|.++.... ..+.+ ..........+|+|+|+
T Consensus 267 y~~d~~~~~~-~--~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g--~~~~l-t~~g~~~~~~~~SpDG~ 340 (427)
T PRK02889 267 YTVNADGSGL-R--RLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG--AAQRV-TFTGSYNTSPRISPDGK 340 (427)
T ss_pred EEEECCCCCc-E--ECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC--ceEEE-ecCCCCcCceEECCCCC
Confidence 54 444442 2 22334455677899999998887664 46677777654321 12222 12223344678999999
Q ss_pred EEEEeeCCC---eEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCC---eEEEE
Q 016982 158 FLATTSTDG---KCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNS---MIYFV 231 (379)
Q Consensus 158 ~l~~~~~d~---~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~---~i~v~ 231 (379)
+|+..+.++ .|.+||+ ..++. ..+... .....+.|+|||+.|+.++.++ .+.+.
T Consensus 341 ~Ia~~s~~~g~~~I~v~d~------------------~~g~~-~~lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~ 400 (427)
T PRK02889 341 LLAYISRVGGAFKLYVQDL------------------ATGQV-TALTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAV 400 (427)
T ss_pred EEEEEEccCCcEEEEEEEC------------------CCCCe-EEccCC-CCccCceECCCCCEEEEEEecCCCEEEEEE
Confidence 998776554 5889986 23332 223221 2346789999999988876443 46666
Q ss_pred ECCCCCceeeeeeeecCCeeeEEEecC
Q 016982 232 DDVGPSPLAQNVAFRDLPLRDVLFVSE 258 (379)
Q Consensus 232 d~~~~~~~~~~~~~~~~~i~~~~~s~~ 258 (379)
++... ....+..+.+.+...+|+|-
T Consensus 401 ~~~g~--~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 401 SSDGR--IKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred ECCCC--ceEEeecCCCCCCCCccCCC
Confidence 76432 23445555667788888873
No 220
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.75 E-value=9.9e-16 Score=134.68 Aligned_cols=201 Identities=14% Similarity=0.142 Sum_probs=135.0
Q ss_pred CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC---CeEEEEeccCCceeeeEEeecCCCceeEEEECC
Q 016982 32 NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD---RNSYVWNQEGSEWVPTLVILRLNRAALCVQWSP 108 (379)
Q Consensus 32 g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~ 108 (379)
..|.+||.... ....+..+...+.+++|+|||+.|+..+.+ ..|.+||+.+++.... ....+....++|+|
T Consensus 184 ~~l~i~D~~g~---~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l---~~~~g~~~~~~~Sp 257 (433)
T PRK04922 184 YALQVADSDGY---NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV---ASFRGINGAPSFSP 257 (433)
T ss_pred EEEEEECCCCC---CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe---ccCCCCccCceECC
Confidence 36888988654 333455567789999999999999887643 4699999988864332 23344556889999
Q ss_pred CCCEEEE-EeCCC--eEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC-CCe--EEEEecccccccccc
Q 016982 109 KENKFAV-GSGAK--TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST-DGK--CRVFSTFIKGVDIKE 182 (379)
Q Consensus 109 ~~~~l~~-~~~d~--~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d~~--i~v~d~~~~~~~~~~ 182 (379)
||+.++. .+.++ .|++||+.++. .+.+ ..+.......+|+|||++|+..+. ++. |.++|+
T Consensus 258 DG~~l~~~~s~~g~~~Iy~~d~~~g~----~~~l-t~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl--------- 323 (433)
T PRK04922 258 DGRRLALTLSRDGNPEIYVMDLGSRQ----LTRL-TNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAA--------- 323 (433)
T ss_pred CCCEEEEEEeCCCCceEEEEECCCCC----eEEC-ccCCCCccceEECCCCCEEEEEECCCCCceEEEEEC---------
Confidence 9997764 44455 58888887765 2333 445555567899999998887764 455 444443
Q ss_pred ccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCC---eEEEEECCCCCceeeeeeeecCCeeeEEEecCC
Q 016982 183 KKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNS---MIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEK 259 (379)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~---~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~ 259 (379)
..++ ...+..+......++|+|+|++++..+.++ .|.+||+.++.. ..+. +......+.|+|||
T Consensus 324 ---------~~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~--~~Lt-~~~~~~~p~~spdG 390 (433)
T PRK04922 324 ---------SGGS-AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV--RTLT-PGSLDESPSFAPNG 390 (433)
T ss_pred ---------CCCC-eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe--EECC-CCCCCCCceECCCC
Confidence 2222 222222233345789999999998765433 699999877653 2333 23345678999999
Q ss_pred cEEEEE
Q 016982 260 MVIGVG 265 (379)
Q Consensus 260 ~~l~~~ 265 (379)
++|+..
T Consensus 391 ~~i~~~ 396 (433)
T PRK04922 391 SMVLYA 396 (433)
T ss_pred CEEEEE
Confidence 987743
No 221
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=2.5e-17 Score=137.16 Aligned_cols=225 Identities=16% Similarity=0.167 Sum_probs=157.4
Q ss_pred EEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCeE
Q 016982 45 EKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSP--KENKFAVGSGAKTV 122 (379)
Q Consensus 45 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v 122 (379)
.....|.+|.+.|++++|+.+|.+|++|+.|-.+.|||.-..+....+. .+|...|.++.|-| +.+.+++|..|..|
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~-TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS-TGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee-cccccceeEEeeeccCCCeEEEeccCcceE
Confidence 4556789999999999999999999999999999999998777666665 68999999999999 56788999999999
Q ss_pred EEEEeecCCc-------eeEEEEEeecCCcCEEEEEEcCCC-cEEEEeeCCCeEEEEeccccccccccccCCCccCCccc
Q 016982 123 CICYYEQENN-------WWVSKLIRKRHDSSVTSVAWHPNN-VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFG 194 (379)
Q Consensus 123 ~i~~~~~~~~-------~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~ 194 (379)
+++|+...+. ....... ..|...|..++-.|++ +.+.++++||+++-+|++ ++...... ....
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~-~cht~rVKria~~p~~PhtfwsasEDGtirQyDiR-------Eph~c~p~-~~~~ 190 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCW-SCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIR-------EPHVCNPD-EDCP 190 (758)
T ss_pred EEEecccccccccccCccchhhhh-hhhhhhhhheecCCCCCceEEEecCCcceeeeccc-------CCccCCcc-cccc
Confidence 9999985321 0112222 6788889999999988 889999999999999873 11100000 0000
Q ss_pred ceEEEeecCCcceEEEEECCC-CCEEEEEcCCCeEEEEECCCCC-------------c----eeeee-eeec--------
Q 016982 195 EQILQLDLSFSWAFGVKWSPS-GNTLAYVGHNSMIYFVDDVGPS-------------P----LAQNV-AFRD-------- 247 (379)
Q Consensus 195 ~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~i~v~d~~~~~-------------~----~~~~~-~~~~-------- 247 (379)
..+..+...--...++..+|. ..+|++|+.|-..++||.+... + ++..+ .+|-
T Consensus 191 ~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~ 270 (758)
T KOG1310|consen 191 SILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLD 270 (758)
T ss_pred HHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccc
Confidence 111111111234678999994 5678999999999999943210 0 11111 1111
Q ss_pred ---CCeeeEEEecCCcEEEEE-eCCCeEEEEecCCC
Q 016982 248 ---LPLRDVLFVSEKMVIGVG-FDCNPMVFAADETG 279 (379)
Q Consensus 248 ---~~i~~~~~s~~~~~l~~~-~d~~~~i~~~~~~~ 279 (379)
..++-+.|+|+|.-|..+ ....+++|+.+...
T Consensus 271 ~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~ 306 (758)
T KOG1310|consen 271 RYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDK 306 (758)
T ss_pred cceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCC
Confidence 115668999998755544 44478888877643
No 222
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.75 E-value=2.2e-14 Score=111.95 Aligned_cols=179 Identities=19% Similarity=0.240 Sum_probs=133.3
Q ss_pred CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc-CCceeeeEEeecCCCceeEEEECCCC
Q 016982 32 NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE-GSEWVPTLVILRLNRAALCVQWSPKE 110 (379)
Q Consensus 32 g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~ 110 (379)
..|.|||-... .++.++. ...+|.++.+.++ .|++.- .+.|.||... +.+....+.....+....+++-+.+.
T Consensus 75 NkviIWDD~k~--~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k 148 (346)
T KOG2111|consen 75 NKVIIWDDLKE--RCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNK 148 (346)
T ss_pred ceEEEEecccC--cEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCc
Confidence 47999995443 5666655 4678999999865 566554 4689999988 44555555544444554444433344
Q ss_pred CEEEEE-eCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCe-EEEEeccccccccccccCCCc
Q 016982 111 NKFAVG-SGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGK-CRVFSTFIKGVDIKEKKEGTS 188 (379)
Q Consensus 111 ~~l~~~-~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~-i~v~d~~~~~~~~~~~~~~~~ 188 (379)
.+||.- -.-|.|+|-|+...... ....+ .+|...|.|++.+-+|..+|+++..|+ |+|||.
T Consensus 149 ~~LafPg~k~GqvQi~dL~~~~~~-~p~~I-~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt--------------- 211 (346)
T KOG2111|consen 149 SLLAFPGFKTGQVQIVDLASTKPN-APSII-NAHDSDIACVALNLQGTLVATASTKGTLIRIFDT--------------- 211 (346)
T ss_pred eEEEcCCCccceEEEEEhhhcCcC-CceEE-EcccCceeEEEEcCCccEEEEeccCcEEEEEEEc---------------
Confidence 455543 34789999998776521 12344 799999999999999999999999997 899996
Q ss_pred cCCcccceEEEeecC--CcceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Q 016982 189 SDTKFGEQILQLDLS--FSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGP 236 (379)
Q Consensus 189 ~~~~~~~~~~~~~~~--~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~ 236 (379)
.+++.+.++... ...|.+++|||++.+|+++|..|+++|+.++..
T Consensus 212 ---~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 212 ---EDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred ---CCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 778888888532 346999999999999999999999999987653
No 223
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.75 E-value=3.5e-18 Score=148.78 Aligned_cols=250 Identities=15% Similarity=0.173 Sum_probs=179.4
Q ss_pred EEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEE
Q 016982 47 LHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICY 126 (379)
Q Consensus 47 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~ 126 (379)
+..+.+|...|.|..|...|.++++|+.|..++||.++++.+.... .+|.+.++.++.+.+..++++++.|..|++|.
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~--rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASC--RGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccC--CCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 3456789999999999999999999999999999999999866655 78999999999999999999999999999999
Q ss_pred eecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcc
Q 016982 127 YEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSW 206 (379)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (379)
+..+.. ...+ .+|.+.|++++|+|-. +.+.||++++||.+.....+.+.+ . .+.. ...
T Consensus 261 l~~~~p---vsvL-rghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp--~-----------~~~~-~~~ 318 (1113)
T KOG0644|consen 261 LPDGAP---VSVL-RGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRP--L-----------KFTE-KDL 318 (1113)
T ss_pred cCCCch---HHHH-hccccceeeeccCccc----cCCCCCceEeccccccccccCCCC--C-----------Cccc-ccc
Confidence 998873 5556 8999999999999964 678899999998631111110000 0 0111 234
Q ss_pred eEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCc-E-EEEEeCCCeEEEEecCCCcEEEE
Q 016982 207 AFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKM-V-IGVGFDCNPMVFAADETGIWTFI 284 (379)
Q Consensus 207 v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~-l~~~~d~~~~i~~~~~~~~~~~~ 284 (379)
+.++.|-.++..+++++.|+.-..|.+.... .+...+.-+.++.+-. + +.+-.+..+.+|+.......+
T Consensus 319 ~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~-------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H-- 389 (1113)
T KOG0644|consen 319 VDSILFENNGDRFLTGSRDGEARNHEFEQLA-------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLH-- 389 (1113)
T ss_pred eeeeeccccccccccccCCcccccchhhHhh-------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhh--
Confidence 6677788888889999999988888654311 1222222222222221 2 223344445555433221111
Q ss_pred EEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEE
Q 016982 285 KFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIV 364 (379)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~ 364 (379)
.+.+|...+..+.+++.+. +.-.++|.||+..
T Consensus 390 --------------------------------------------~l~ghsd~~yvLd~Hpfn~----ri~msag~dgst~ 421 (1113)
T KOG0644|consen 390 --------------------------------------------NLMGHSDEVYVLDVHPFNP----RIAMSAGYDGSTI 421 (1113)
T ss_pred --------------------------------------------hhcccccceeeeeecCCCc----HhhhhccCCCceE
Confidence 3468999999999776665 7788999999999
Q ss_pred EEeCCCccccccC
Q 016982 365 TWDLESQEDLLNY 377 (379)
Q Consensus 365 iW~~~~~~~~~~~ 377 (379)
|||+-.|..++.+
T Consensus 422 iwdi~eg~pik~y 434 (1113)
T KOG0644|consen 422 IWDIWEGIPIKHY 434 (1113)
T ss_pred eeecccCCcceee
Confidence 9999988777654
No 224
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=3.7e-16 Score=139.80 Aligned_cols=249 Identities=12% Similarity=0.139 Sum_probs=172.4
Q ss_pred cceeEEEeCC--CCcEEEEEecCCeEEEEEecCC---ceEEEEEeccCC-------CceEEEEEcCCCCEEEEEeCCCeE
Q 016982 11 QCITCHAWSP--DHAMVAFCPNNNEVHIYKLIQE---KWEKLHVLQKHD-------QIVSGIDWSVRSNRIVTVSHDRNS 78 (379)
Q Consensus 11 ~~i~~~~~s~--~~~~l~~~~~dg~i~i~~~~~~---~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~~d~~i 78 (379)
..|+.+.+-. |..++++|+.||.|+||+-... +.+.+....+-. +.=.-+.|.....+|++++.-..|
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~I 1189 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSI 1189 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEE
Confidence 4677787754 4568999999999999975432 234444333211 111345677766677777767899
Q ss_pred EEEeccCCceeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcC--EEEEEEcCC
Q 016982 79 YVWNQEGSEWVPTLVILRLNRAALCVQWSP-KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSS--VTSVAWHPN 155 (379)
Q Consensus 79 ~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~p~ 155 (379)
+|||.........+. .+....++++.-+. .|+.+++|..||.|++||.+........... ..|... |..+.+.+.
T Consensus 1190 RIWDa~~E~~~~diP-~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~-R~h~~~~~Iv~~slq~~ 1267 (1387)
T KOG1517|consen 1190 RIWDAHKEQVVADIP-YGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVY-REHNDVEPIVHLSLQRQ 1267 (1387)
T ss_pred EEEecccceeEeecc-cCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceee-cccCCcccceeEEeecC
Confidence 999999887655543 33456677776544 5799999999999999999887643334444 677776 999999997
Q ss_pred C-cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecC---CcceEEEEECCCCCEEEEEcCCCeEEEE
Q 016982 156 N-VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS---FSWAFGVKWSPSGNTLAYVGHNSMIYFV 231 (379)
Q Consensus 156 ~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~sp~~~~l~~~~~d~~i~v~ 231 (379)
| ..|++|+.+|.|++||++. ...+...++..| .+..+++..+++...+|+|+. +.|+||
T Consensus 1268 G~~elvSgs~~G~I~~~DlR~----------------~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy 1330 (1387)
T KOG1517|consen 1268 GLGELVSGSQDGDIQLLDLRM----------------SSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIY 1330 (1387)
T ss_pred CCcceeeeccCCeEEEEeccc----------------CcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEE
Confidence 7 4599999999999999831 111222222222 235899999999999999988 999999
Q ss_pred ECCCCCceeee-----eeeecCCeeeEEEecCCcEEEEE-eCCCeEEEEecCC
Q 016982 232 DDVGPSPLAQN-----VAFRDLPLRDVLFVSEKMVIGVG-FDCNPMVFAADET 278 (379)
Q Consensus 232 d~~~~~~~~~~-----~~~~~~~i~~~~~s~~~~~l~~~-~d~~~~i~~~~~~ 278 (379)
++......... +....+.+.+++|+|-.-++|+| .|..|.+|.....
T Consensus 1331 ~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1331 SLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred ecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 98764321111 11123457899999988788754 5667778775543
No 225
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=6e-16 Score=122.62 Aligned_cols=200 Identities=15% Similarity=0.264 Sum_probs=144.0
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCC-CCEEEEEeCCCeEEEEEeecCCce
Q 016982 55 QIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPK-ENKFAVGSGAKTVCICYYEQENNW 133 (379)
Q Consensus 55 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~ 133 (379)
..+..++|++.-..++++..|-.|++|+-... +...+. ......|++++|-|. ++.|++|+. +.|.+|......+.
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst-~pt~Lk-s~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~ 175 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSST-CPTKLK-SVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNA 175 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCC-CCceec-chhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccccc
Confidence 35678999997677889999999999998773 333332 345678999999995 467888886 45889976543210
Q ss_pred e---------EEEEEeecCCcCEEEEEEcCCCcEEEEeeC-CCeEEEEeccccccccccccCCCccCCcccceEEEeecC
Q 016982 134 W---------VSKLIRKRHDSSVTSVAWHPNNVFLATTST-DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS 203 (379)
Q Consensus 134 ~---------~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (379)
. ..+.++.....+|+++.|.+||..+++++. +..|.|||. .++..+.-....
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdp------------------dtg~~~pL~~~g 237 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDP------------------DTGQKIPLIPKG 237 (445)
T ss_pred ccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcC------------------CCCCcccccccC
Confidence 0 111222222368999999999999998885 678999997 444444333334
Q ss_pred CcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEec
Q 016982 204 FSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAAD 276 (379)
Q Consensus 204 ~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~ 276 (379)
.+.++-+.|||||.+|+.+.-|+..++|+........+...+ .+.|...+|+|+|++|.....+..++|...
T Consensus 238 lgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lg-sgrvqtacWspcGsfLLf~~sgsp~lysl~ 309 (445)
T KOG2139|consen 238 LGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILG-SGRVQTACWSPCGSFLLFACSGSPRLYSLT 309 (445)
T ss_pred CCceeeEEEcCCCCEEEEecccceeeeehhcccceecceecc-CCceeeeeecCCCCEEEEEEcCCceEEEEe
Confidence 567889999999999999999999999965544322233332 448999999999999887777777777654
No 226
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.73 E-value=5.4e-15 Score=116.51 Aligned_cols=249 Identities=10% Similarity=0.086 Sum_probs=179.8
Q ss_pred ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982 5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE 84 (379)
Q Consensus 5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~ 84 (379)
.+.+|.+.|++...-|...-+++.+.|.+++||--.+....-.........+++++.+.++...|+.+-.+|++.-+.+.
T Consensus 19 ~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~s 98 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALS 98 (404)
T ss_pred hhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhh
Confidence 35678888998888887788999999999999965543111111222235688999999999999999999999888764
Q ss_pred CC----ceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEE
Q 016982 85 GS----EWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLA 160 (379)
Q Consensus 85 ~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 160 (379)
.. ...+ ....|...+..+.|+....++++.+.|..+.---.+.+.. +.... . ....+++.+.-. +..
T Consensus 99 edfnkm~~~r--~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~--lg~Y~-~--~~~~t~~~~d~~--~~f 169 (404)
T KOG1409|consen 99 EDFNKMTFLK--DYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNR--LGGYN-F--ETPASALQFDAL--YAF 169 (404)
T ss_pred hhhhhcchhh--hhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCc--ccceE-e--eccCCCCceeeE--EEE
Confidence 32 2222 2256889999999999999999999998875433443332 11111 0 011111222111 445
Q ss_pred EeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCcee
Q 016982 161 TTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA 240 (379)
Q Consensus 161 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~ 240 (379)
.|...|.+....+. ......+.++.+|.+.+.+++|.|....|+++..|..+.+||+...+...
T Consensus 170 vGd~~gqvt~lr~~----------------~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~ 233 (404)
T KOG1409|consen 170 VGDHSGQITMLKLE----------------QNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTA 233 (404)
T ss_pred ecccccceEEEEEe----------------ecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCccee
Confidence 56666766665542 24457788999999999999999999999999999999999998877777
Q ss_pred eeeeeecCCeeeEEEecC-CcEEEEEeCCCeEEEEecCC
Q 016982 241 QNVAFRDLPLRDVLFVSE-KMVIGVGFDCNPMVFAADET 278 (379)
Q Consensus 241 ~~~~~~~~~i~~~~~s~~-~~~l~~~~d~~~~i~~~~~~ 278 (379)
..+.+|...|..+...+- .++++++.|+.+.+|+.+..
T Consensus 234 ~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 234 YELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred eeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 888899999988887764 45667899999999997753
No 227
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.73 E-value=1.1e-16 Score=132.97 Aligned_cols=173 Identities=17% Similarity=0.219 Sum_probs=125.3
Q ss_pred CCCcEEEEEecCCeEEEEEecCCceEEEEEec--cCCCceEEEEEcCCC-CEEEEEeCCCeEEEEeccCC----------
Q 016982 20 PDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQ--KHDQIVSGIDWSVRS-NRIVTVSHDRNSYVWNQEGS---------- 86 (379)
Q Consensus 20 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~-~~l~~~~~d~~i~vw~~~~~---------- 86 (379)
|.+--|..|-..|.|++.|....+...+.... -....|+++.|-|.+ ..++.+-.+|.+++||.+-.
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 45555777777889999887653211111111 123689999999866 45566667899999975311
Q ss_pred ----cee------------eeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEE
Q 016982 87 ----EWV------------PTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSV 150 (379)
Q Consensus 87 ----~~~------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~ 150 (379)
... +.....-..+.|...+|+|||++||+.+.||.++|||+.+.+ +.... +...+...|+
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e---Llg~m-kSYFGGLLCv 338 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE---LLGVM-KSYFGGLLCV 338 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHH---HHHHH-HhhccceEEE
Confidence 000 001111124578899999999999999999999999999876 23333 5556789999
Q ss_pred EEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECC
Q 016982 151 AWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSP 214 (379)
Q Consensus 151 ~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 214 (379)
+|+|||+++++|++|.-|.||.+ ...+.+..=++|..+|..++|+|
T Consensus 339 cWSPDGKyIvtGGEDDLVtVwSf------------------~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 339 CWSPDGKYIVTGGEDDLVTVWSF------------------EERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEcCCccEEEecCCcceEEEEEe------------------ccceEEEeccccccceeeEeecc
Confidence 99999999999999999999986 55677777789999999999983
No 228
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.72 E-value=2.3e-14 Score=111.90 Aligned_cols=236 Identities=14% Similarity=0.142 Sum_probs=154.9
Q ss_pred cceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCC--ceEEEEEcCCCCEEEE-EeCC------CeEEEE
Q 016982 11 QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQ--IVSGIDWSVRSNRIVT-VSHD------RNSYVW 81 (379)
Q Consensus 11 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~-~~~d------~~i~vw 81 (379)
.....++|+.|..-+++|..+ -.+||+.+.= +.....+.+.. .+..+-| ..++|+- |+.+ .+|.||
T Consensus 6 ~~~lsvs~NQD~ScFava~~~-Gfriyn~~P~--ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIW 80 (346)
T KOG2111|consen 6 PKTLSVSFNQDHSCFAVATDT-GFRIYNCDPF--KESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIW 80 (346)
T ss_pred CceeEEEEccCCceEEEEecC-ceEEEecCch--hhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEE
Confidence 345569999999999998765 5899988752 22111111222 2222222 2345543 3322 469999
Q ss_pred eccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEe-ecCCcCEEEEEEcCCCcEEE
Q 016982 82 NQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIR-KRHDSSVTSVAWHPNNVFLA 160 (379)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~l~ 160 (379)
|=....++..+ ....+|.++.+.++ .|++.- .+.|++|.+..... ....+. ......+.+++-..+..+||
T Consensus 81 DD~k~~~i~el---~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k--~l~~~et~~NPkGlC~~~~~~~k~~La 152 (346)
T KOG2111|consen 81 DDLKERCIIEL---SFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPK--LLHVIETRSNPKGLCSLCPTSNKSLLA 152 (346)
T ss_pred ecccCcEEEEE---EeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChh--heeeeecccCCCceEeecCCCCceEEE
Confidence 95555544444 35789999999865 566655 47899999874432 222221 12233344443333445555
Q ss_pred Ee-eCCCeEEEEeccccccccccccCCCccCCcccc-eEEEeecCCcceEEEEECCCCCEEEEEcCCCe-EEEEECCCCC
Q 016982 161 TT-STDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGE-QILQLDLSFSWAFGVKWSPSGNTLAYVGHNSM-IYFVDDVGPS 237 (379)
Q Consensus 161 ~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~-i~v~d~~~~~ 237 (379)
.- -.-|.|+|-|+. .+.. ....+..|...|.+++++.+|..+|++|..|+ |+|||..++.
T Consensus 153 fPg~k~GqvQi~dL~-----------------~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~ 215 (346)
T KOG2111|consen 153 FPGFKTGQVQIVDLA-----------------STKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGT 215 (346)
T ss_pred cCCCccceEEEEEhh-----------------hcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCc
Confidence 53 357899999973 1111 34667899999999999999999999999986 8899999887
Q ss_pred ceeeeee-e-ecCCeeeEEEecCCcEEEEE-eCCCeEEEEecC
Q 016982 238 PLAQNVA-F-RDLPLRDVLFVSEKMVIGVG-FDCNPMVFAADE 277 (379)
Q Consensus 238 ~~~~~~~-~-~~~~i~~~~~s~~~~~l~~~-~d~~~~i~~~~~ 277 (379)
.+ +++. + ....|++++|||+..+||++ ..+++.+|.+.+
T Consensus 216 ~l-~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 216 LL-QELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred Ee-eeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 54 5554 2 23569999999999999955 556899998765
No 229
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.72 E-value=5.8e-16 Score=117.50 Aligned_cols=205 Identities=13% Similarity=0.142 Sum_probs=149.1
Q ss_pred cCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEe--------------------------------------
Q 016982 9 FAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVL-------------------------------------- 50 (379)
Q Consensus 9 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~-------------------------------------- 50 (379)
+...|+.+.--|+ ..|.+-++|+.+.+|++..+.+..++.+
T Consensus 55 g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~ 133 (323)
T KOG0322|consen 55 GRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDG 133 (323)
T ss_pred ccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhcc
Confidence 4678888888887 5677778999999999865311111100
Q ss_pred -------------ccCCCceEEEEEcC-CCC--EEEEEeCCCeEEEEeccCCcee--------eeEEeecCCCceeEEEE
Q 016982 51 -------------QKHDQIVSGIDWSV-RSN--RIVTVSHDRNSYVWNQEGSEWV--------PTLVILRLNRAALCVQW 106 (379)
Q Consensus 51 -------------~~~~~~v~~~~~~~-~~~--~l~~~~~d~~i~vw~~~~~~~~--------~~~~~~~~~~~v~~~~~ 106 (379)
.+..+.+.+..+.. ++. +++.|-.+|.+.+||+.++..+ -......|.++|.++.|
T Consensus 134 g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldy 213 (323)
T KOG0322|consen 134 GDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDY 213 (323)
T ss_pred CccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeee
Confidence 00112344555422 222 4567778999999999987321 11223568899999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEeecCCc-eeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccC
Q 016982 107 SPKENKFAVGSGAKTVCICYYEQENN-WWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKE 185 (379)
Q Consensus 107 ~~~~~~l~~~~~d~~v~i~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 185 (379)
.+.-..=++|+.+..+..|.++.... ..+...+ .-....+..+..-||++.+|+++.|+.|+||.-
T Consensus 214 as~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~-~lknpGv~gvrIRpD~KIlATAGWD~RiRVysw------------ 280 (323)
T KOG0322|consen 214 ASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEI-TLKNPGVSGVRIRPDGKILATAGWDHRIRVYSW------------ 280 (323)
T ss_pred chhhcCCcCCCccccceeeeeccccCcccccceE-EecCCCccceEEccCCcEEeecccCCcEEEEEe------------
Confidence 87655557777788888898876532 1122222 223446788999999999999999999999985
Q ss_pred CCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEEC
Q 016982 186 GTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDD 233 (379)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~ 233 (379)
++..++..+..|...|++++|+|+...+|.++.|++|.+|++
T Consensus 281 ------rtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 281 ------RTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ------ccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 788999999999999999999999999999999999999986
No 230
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.72 E-value=1.3e-13 Score=117.29 Aligned_cols=190 Identities=13% Similarity=0.098 Sum_probs=126.5
Q ss_pred cEE-EEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCce
Q 016982 23 AMV-AFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAA 101 (379)
Q Consensus 23 ~~l-~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v 101 (379)
+++ ++-..++.|.+.|..+. +.+..+......-..+.|+|||+++++++.|+.|.++|+.+.+.+..+.. ....
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~--~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~---G~~~ 80 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATN--KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV---GGNP 80 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT---SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE----SSEE
T ss_pred cEEEEEecCCCEEEEEECCCC--eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec---CCCc
Confidence 445 44556899999999886 67777776554445678999999999999999999999999997776643 4567
Q ss_pred eEEEECCCCCEEEEEe-CCCeEEEEEeecCCceeEEEEEeec------CCcCEEEEEEcCCCcEEEEeeC-CCeEEEEec
Q 016982 102 LCVQWSPKENKFAVGS-GAKTVCICYYEQENNWWVSKLIRKR------HDSSVTSVAWHPNNVFLATTST-DGKCRVFST 173 (379)
Q Consensus 102 ~~~~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~p~~~~l~~~~~-d~~i~v~d~ 173 (379)
..+++++||++++++. ..+.+.++|.++.+ ..+.+... ....+..+..+|....++..-. .+.|.+.|.
T Consensus 81 ~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle---~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy 157 (369)
T PF02239_consen 81 RGIAVSPDGKYVYVANYEPGTVSVIDAETLE---PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDY 157 (369)
T ss_dssp EEEEE--TTTEEEEEEEETTEEEEEETTT-----EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEET
T ss_pred ceEEEcCCCCEEEEEecCCCceeEecccccc---ceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEe
Confidence 8999999999998876 48999999988876 34444211 2356788888888875555544 578877775
Q ss_pred cccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEE-cCCCeEEEEECCCCC
Q 016982 174 FIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYV-GHNSMIYFVDDVGPS 237 (379)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~i~v~d~~~~~ 237 (379)
. ....................|+|++++++.+ ..++.|-++|..+.+
T Consensus 158 ~-----------------d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k 205 (369)
T PF02239_consen 158 S-----------------DPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK 205 (369)
T ss_dssp T-----------------TSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred c-----------------cccccceeeecccccccccccCcccceeeecccccceeEEEeeccce
Confidence 2 1112222222224456789999999987664 466789999987764
No 231
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.71 E-value=1.7e-12 Score=110.64 Aligned_cols=262 Identities=16% Similarity=0.092 Sum_probs=171.6
Q ss_pred CcceeEEEeCCCCcEEEEEec----CCeEEEEEecC--CceEEEEEeccCCCceEEEEEcCCCCEEEEEe-CCCeEEEEe
Q 016982 10 AQCITCHAWSPDHAMVAFCPN----NNEVHIYKLIQ--EKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVS-HDRNSYVWN 82 (379)
Q Consensus 10 ~~~i~~~~~s~~~~~l~~~~~----dg~i~i~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~vw~ 82 (379)
......++++|++++|.+... ++.|..|++.. ++++.+............++++|++++|+++. .+|.|.+++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence 455677899999999988766 57999999886 45666666654444556899999999998886 588999999
Q ss_pred ccC-CceeeeEEeec-----------CCCceeEEEECCCCCEEEEEeC-CCeEEEEEeecCCc-eeEEEEEeecCCcCEE
Q 016982 83 QEG-SEWVPTLVILR-----------LNRAALCVQWSPKENKFAVGSG-AKTVCICYYEQENN-WWVSKLIRKRHDSSVT 148 (379)
Q Consensus 83 ~~~-~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~~-d~~v~i~~~~~~~~-~~~~~~~~~~~~~~v~ 148 (379)
+.. +.......... ......++.++|+++++++... ...|.+|+++.... ......+.......-.
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR 195 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR 195 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc
Confidence 987 43333221111 1245678999999998887654 45799999987652 1112223235556778
Q ss_pred EEEEcCCCcEEEEee-CCCeEEEEeccccccccccccCCCccCCcccceEEEeec----C--CcceEEEEECCCCCEEEE
Q 016982 149 SVAWHPNNVFLATTS-TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDL----S--FSWAFGVKWSPSGNTLAY 221 (379)
Q Consensus 149 ~~~~~p~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~v~~~~~sp~~~~l~~ 221 (379)
.+.|+|+++++.+.. .++.|.++++..... ..+.+..+.. . ......++++|||++|++
T Consensus 196 h~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g--------------~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyv 261 (345)
T PF10282_consen 196 HLAFSPDGKYAYVVNELSNTVSVFDYDPSDG--------------SLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYV 261 (345)
T ss_dssp EEEE-TTSSEEEEEETTTTEEEEEEEETTTT--------------EEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEE
T ss_pred EEEEcCCcCEEEEecCCCCcEEEEeecccCC--------------ceeEEEEeeeccccccccCCceeEEEecCCCEEEE
Confidence 999999998776655 578899998730000 0111222211 1 125788999999999877
Q ss_pred Ec-CCCeEEEEECCCC-Cc--eeeeeeeecCCeeeEEEecCCcEEEEE--eCCCeEEEEec-CCCcEEEEE
Q 016982 222 VG-HNSMIYFVDDVGP-SP--LAQNVAFRDLPLRDVLFVSEKMVIGVG--FDCNPMVFAAD-ETGIWTFIK 285 (379)
Q Consensus 222 ~~-~d~~i~v~d~~~~-~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~--~d~~~~i~~~~-~~~~~~~~~ 285 (379)
+. ..+.|.+|++... .. .+..+...+...+.++++|+|++|+++ .++.+.+|..+ ..|.+....
T Consensus 262 snr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 262 SNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp EECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred EeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence 65 5678999998432 22 223333334557899999999988854 45589999887 456666544
No 232
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.71 E-value=1.7e-13 Score=116.53 Aligned_cols=259 Identities=12% Similarity=0.097 Sum_probs=158.0
Q ss_pred eeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEe-CCCeEEEEeccCCceeee
Q 016982 13 ITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVS-HDRNSYVWNQEGSEWVPT 91 (379)
Q Consensus 13 i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~vw~~~~~~~~~~ 91 (379)
-..+.|+|||+++.++++||.|.++|+.+. +.+.+++... ....+++++||++++++. .++.+.++|.++.+.+..
T Consensus 39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~--~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~ 115 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANRDGTVSVIDLATG--KVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKT 115 (369)
T ss_dssp EEEEE-TT-SSEEEEEETTSEEEEEETTSS--SEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEE
T ss_pred eeEEEecCCCCEEEEEcCCCeEEEEECCcc--cEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceee
Confidence 345789999999999999999999999998 5777776544 457899999999988765 678999999999987776
Q ss_pred EEeecC-----CCceeEEEECCCCCEEEEEeC-CCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEe-eC
Q 016982 92 LVILRL-----NRAALCVQWSPKENKFAVGSG-AKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATT-ST 164 (379)
Q Consensus 92 ~~~~~~-----~~~v~~~~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-~~ 164 (379)
+..... ...+..+..+|....+++.-. .+.|.+.|+...... .... ...........|+|++++++.+ ..
T Consensus 116 I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~-~~~~--i~~g~~~~D~~~dpdgry~~va~~~ 192 (369)
T PF02239_consen 116 IPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL-KVTT--IKVGRFPHDGGFDPDGRYFLVAANG 192 (369)
T ss_dssp EE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE-EEEE--EE--TTEEEEEE-TTSSEEEEEEGG
T ss_pred cccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc-ceee--ecccccccccccCcccceeeecccc
Confidence 654322 346778888888875555544 577777776655432 1222 2345567889999999987664 34
Q ss_pred CCeEEEEecccccccc----ccc--------------------------------cCCC-ccCCcccceEEEeecCCcce
Q 016982 165 DGKCRVFSTFIKGVDI----KEK--------------------------------KEGT-SSDTKFGEQILQLDLSFSWA 207 (379)
Q Consensus 165 d~~i~v~d~~~~~~~~----~~~--------------------------------~~~~-~~~~~~~~~~~~~~~~~~~v 207 (379)
++.+-++|........ ... ..+. ..+....+.++++....++
T Consensus 193 sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g- 271 (369)
T PF02239_consen 193 SNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG- 271 (369)
T ss_dssp GTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS-
T ss_pred cceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-
Confidence 5677777765321110 000 0000 1234556677777765555
Q ss_pred EEEEECCCCCEEEEE----cCCCeEEEEECCCCCceeeeeee-ecCCeeeEEEecCCcEEE-EEeCC--CeEEEEecCCC
Q 016982 208 FGVKWSPSGNTLAYV----GHNSMIYFVDDVGPSPLAQNVAF-RDLPLRDVLFVSEKMVIG-VGFDC--NPMVFAADETG 279 (379)
Q Consensus 208 ~~~~~sp~~~~l~~~----~~d~~i~v~d~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~-~~~d~--~~~i~~~~~~~ 279 (379)
..+..+|+++++.+. ...+.|.++|.++.+ ....+.. ....+..+.|+++|+.+- +..++ .+.+|+...-.
T Consensus 272 lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~-~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~ 350 (369)
T PF02239_consen 272 LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLK-VVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLK 350 (369)
T ss_dssp --EE--TT-SEEEEE-TT-SSHT-EEEEECCGTE-EEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTE
T ss_pred ceeecCCCCccEEeeccCCCCCceEEEEECcCcc-eeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcE
Confidence 678889999999987 455899999998874 3344432 234588999999998655 33333 58888866543
No 233
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.71 E-value=9.3e-15 Score=115.22 Aligned_cols=264 Identities=12% Similarity=0.095 Sum_probs=173.9
Q ss_pred CcceeEEEeCCCCcEEEEEecCCeEEEEEecCC---ceEEEEEeccCCC------------ceEEEEEcCCCC--EEEEE
Q 016982 10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQE---KWEKLHVLQKHDQ------------IVSGIDWSVRSN--RIVTV 72 (379)
Q Consensus 10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~---~~~~~~~~~~~~~------------~v~~~~~~~~~~--~l~~~ 72 (379)
.+-|.++.|..+|.+||+|..+|.|.+|.-... +......++.|.. .|+.+.|.++++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 567999999999999999999999999976542 2334555655643 578899998763 56667
Q ss_pred eCCCeEEEEeccCCceee--------------------e--------------EEeecCCCceeEEEECCCCCEEEEEeC
Q 016982 73 SHDRNSYVWNQEGSEWVP--------------------T--------------LVILRLNRAALCVQWSPKENKFAVGSG 118 (379)
Q Consensus 73 ~~d~~i~vw~~~~~~~~~--------------------~--------------~~~~~~~~~v~~~~~~~~~~~l~~~~~ 118 (379)
+.|.+|++|.+....... . .....|.--|.+++++.|...++++.
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD- 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD- 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence 889999999875431111 0 11134566788999999988887765
Q ss_pred CCeEEEEEeecCCceeEEEEEeecC-----CcCEEEEEEcCCC-cEEEEeeCCCeEEEEeccccccccccccCCCccCCc
Q 016982 119 AKTVCICYYEQENNWWVSKLIRKRH-----DSSVTSVAWHPNN-VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTK 192 (379)
Q Consensus 119 d~~v~i~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~p~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~ 192 (379)
|=.|.+|+++-.....-..-+ +++ ...|++..|+|.. +.++..+..|+|++.|++....=.+..+... ...
T Consensus 184 dLRINLWnlei~d~sFnIVDI-KP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfE--epe 260 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDI-KPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFE--EPE 260 (433)
T ss_pred ceeeeeccccccCCceeEEEc-cccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhc--ccc
Confidence 678999998765431111111 222 3468899999965 7888899999999998742111000000000 000
Q ss_pred ccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecC------------C---eeeEEEec
Q 016982 193 FGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDL------------P---LRDVLFVS 257 (379)
Q Consensus 193 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~------------~---i~~~~~s~ 257 (379)
.+....-|..--..|..+.|+++|+|+++-. --+|++||+......+.+.+.|.. . -..++|+.
T Consensus 261 dp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg 339 (433)
T KOG1354|consen 261 DPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG 339 (433)
T ss_pred CCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence 0000111122234588999999999998643 368999999766555566665532 1 24588998
Q ss_pred CCcEEE-EEeCCCeEEEEecCC
Q 016982 258 EKMVIG-VGFDCNPMVFAADET 278 (379)
Q Consensus 258 ~~~~l~-~~~d~~~~i~~~~~~ 278 (379)
++.+++ +++.+..++|....+
T Consensus 340 ~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 340 NDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred CcceEecccccceEEEecCCCC
Confidence 888777 667888888885544
No 234
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.71 E-value=3.7e-17 Score=133.39 Aligned_cols=236 Identities=16% Similarity=0.149 Sum_probs=179.5
Q ss_pred CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCcee
Q 016982 10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWV 89 (379)
Q Consensus 10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~ 89 (379)
...|.++.|-.+..++|++ ....++|||-.. ..++.+..|. .|..+.|.|..-+|++++..|.+.--|+.+|+.+
T Consensus 170 ~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~G---tElHClk~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklV 244 (545)
T KOG1272|consen 170 METVRDVTFLHNEQFFAVA-QKKYVYVYDNNG---TELHCLKRHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLV 244 (545)
T ss_pred hhhhhhhhhhcchHHHHhh-hhceEEEecCCC---cEEeehhhcC-chhhhcccchhheeeecccCCceEEEeechhhhh
Confidence 5678888998888889888 567999999765 5777777664 7899999999988999999999999999999977
Q ss_pred eeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEE
Q 016982 90 PTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCR 169 (379)
Q Consensus 90 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~ 169 (379)
..+ ....+.+..++-+|-+..+-+|...|+|.+|......+ +.+. ..|.++|.++++.++|++++|.+.|..++
T Consensus 245 a~~--~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP--LvKi--LcH~g~V~siAv~~~G~YMaTtG~Dr~~k 318 (545)
T KOG1272|consen 245 ASI--RTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP--LVKI--LCHRGPVSSIAVDRGGRYMATTGLDRKVK 318 (545)
T ss_pred HHH--HccCCccchhhcCCccceEEEcCCCceEEecCCCCcch--HHHH--HhcCCCcceEEECCCCcEEeeccccccee
Confidence 766 34568888899999999999999999999998877664 4444 48999999999999999999999999999
Q ss_pred EEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEE-CCCCC-ceeeeeeee-
Q 016982 170 VFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVD-DVGPS-PLAQNVAFR- 246 (379)
Q Consensus 170 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d-~~~~~-~~~~~~~~~- 246 (379)
|||+ +....+.++.. ..+...+++|..| +++.+....+.||. .-.+. ......-.|
T Consensus 319 IWDl------------------R~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~ 377 (545)
T KOG1272|consen 319 IWDL------------------RNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHR 377 (545)
T ss_pred Eeee------------------ccccccceeec-CCCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhc
Confidence 9998 33334444433 3456788888766 34445667899994 22211 111111122
Q ss_pred -cCCeeeEEEecCCcEEEEEeCCCeEEEEecC
Q 016982 247 -DLPLRDVLFVSEKMVIGVGFDCNPMVFAADE 277 (379)
Q Consensus 247 -~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~ 277 (379)
..+|..+.|.|-..+|-.|..+.+.-.-..+
T Consensus 378 ~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPG 409 (545)
T KOG1272|consen 378 CGGPVEDLRFCPYEDVLGIGHAGGITSILVPG 409 (545)
T ss_pred cCcccccceeccHHHeeeccccCCceeEeccC
Confidence 4589999999987888777666554333333
No 235
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.70 E-value=3.7e-15 Score=115.10 Aligned_cols=150 Identities=19% Similarity=0.285 Sum_probs=106.1
Q ss_pred EEEEEcCCCCEEEEEeC----------CCeEEEEeccCC-ceeeeEEeecCCCceeEEEECCCCCEEEEEe--CCCeEEE
Q 016982 58 SGIDWSVRSNRIVTVSH----------DRNSYVWNQEGS-EWVPTLVILRLNRAALCVQWSPKENKFAVGS--GAKTVCI 124 (379)
Q Consensus 58 ~~~~~~~~~~~l~~~~~----------d~~i~vw~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~v~i 124 (379)
..+.|+|+|++|+.-.. -+...+|.++.. .....+. ....++|.+++|+|+|+.|++.. .++.+.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~-l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIE-LKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceee-ccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 36789999987765432 133556655333 2223332 23345799999999999876653 4678999
Q ss_pred EEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC---CCeEEEEeccccccccccccCCCccCCcccceEEEee
Q 016982 125 CYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST---DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD 201 (379)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (379)
||++... ...+ ....+..+.|+|+|++|++++. .|.+.+||+ +..+.+....
T Consensus 88 yd~~~~~----i~~~---~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~------------------~~~~~i~~~~ 142 (194)
T PF08662_consen 88 YDVKGKK----IFSF---GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDV------------------RKKKKISTFE 142 (194)
T ss_pred EcCcccE----eEee---cCCCceEEEECCCCCEEEEEEccCCCcEEEEEEC------------------CCCEEeeccc
Confidence 9996322 3333 4567789999999999999874 467999997 4556666554
Q ss_pred cCCcceEEEEECCCCCEEEEEcC------CCeEEEEECCC
Q 016982 202 LSFSWAFGVKWSPSGNTLAYVGH------NSMIYFVDDVG 235 (379)
Q Consensus 202 ~~~~~v~~~~~sp~~~~l~~~~~------d~~i~v~d~~~ 235 (379)
. ..++.++|+|+|++|+++.. |+.++||+...
T Consensus 143 ~--~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 143 H--SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred c--CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 3 34789999999999998863 78899999754
No 236
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.70 E-value=7.5e-15 Score=113.43 Aligned_cols=148 Identities=15% Similarity=0.296 Sum_probs=104.7
Q ss_pred eEEEeCCCCcEEEEEec----------CCeEEEEEecCCceEEEEEecc-CCCceEEEEEcCCCCEEEEE--eCCCeEEE
Q 016982 14 TCHAWSPDHAMVAFCPN----------NNEVHIYKLIQEKWEKLHVLQK-HDQIVSGIDWSVRSNRIVTV--SHDRNSYV 80 (379)
Q Consensus 14 ~~~~~s~~~~~l~~~~~----------dg~i~i~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~--~~d~~i~v 80 (379)
..+.|+|+|++|++-.. -+...+|.++... .....+.- ..++|.+++|+|+|+.|++. ..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~-~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN-IPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC-CccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 45789999988765433 2345666664332 23333332 34579999999999887554 35678999
Q ss_pred EeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeC---CCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCc
Q 016982 81 WNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSG---AKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNV 157 (379)
Q Consensus 81 w~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 157 (379)
||++ .+. ...+ ....+..+.|+|+|+++++++. .|.+.+||.+..+ .... .....+..++|+|+|+
T Consensus 88 yd~~-~~~--i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~---~i~~---~~~~~~t~~~WsPdGr 156 (194)
T PF08662_consen 88 YDVK-GKK--IFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK---KIST---FEHSDATDVEWSPDGR 156 (194)
T ss_pred EcCc-ccE--eEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE---Eeec---cccCcEEEEEEcCCCC
Confidence 9997 332 2322 3567789999999999999875 4679999999654 2222 2334578999999999
Q ss_pred EEEEeeC------CCeEEEEec
Q 016982 158 FLATTST------DGKCRVFST 173 (379)
Q Consensus 158 ~l~~~~~------d~~i~v~d~ 173 (379)
+|+++.. |+.++||+.
T Consensus 157 ~~~ta~t~~r~~~dng~~Iw~~ 178 (194)
T PF08662_consen 157 YLATATTSPRLRVDNGFKIWSF 178 (194)
T ss_pred EEEEEEeccceeccccEEEEEe
Confidence 9998874 678999986
No 237
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=2.6e-15 Score=120.17 Aligned_cols=250 Identities=14% Similarity=0.150 Sum_probs=181.6
Q ss_pred CcceeEEEeCCCCc--EEEEEecCCeEEEEEecCCceEEE----EEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982 10 AQCITCHAWSPDHA--MVAFCPNNNEVHIYKLIQEKWEKL----HVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ 83 (379)
Q Consensus 10 ~~~i~~~~~s~~~~--~l~~~~~dg~i~i~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~ 83 (379)
...|+.++|..+++ .|...+.+..+..+.......... ........+|..++.. ...|++|-.+|.+.+|..
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEec
Confidence 45677888876553 444444566777777665421111 1333345566666654 347888889999999998
Q ss_pred cCCc--eeeeEEeecCCCceeEEEECCCC-CEEEEEeCC--CeEEEEEeecCCceeEEEEEee-----cCCcCEEEEEEc
Q 016982 84 EGSE--WVPTLVILRLNRAALCVQWSPKE-NKFAVGSGA--KTVCICYYEQENNWWVSKLIRK-----RHDSSVTSVAWH 153 (379)
Q Consensus 84 ~~~~--~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d--~~v~i~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~ 153 (379)
+.+. -.+... .....++..+.-++.. ..+++|+.. ..+.+||++.....+..+.+.. .-.-.++++.|-
T Consensus 133 k~~d~hss~l~~-la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl 211 (412)
T KOG3881|consen 133 KSGDLHSSKLIK-LATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFL 211 (412)
T ss_pred cCCcccccccee-eecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceec
Confidence 8543 111122 2234567777777744 456668888 8899999988754322222210 112356788898
Q ss_pred CC--CcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEE
Q 016982 154 PN--NVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFV 231 (379)
Q Consensus 154 p~--~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~ 231 (379)
|. ...|++++.-+.+++||+ ....+++.+|.....+++++...|+|+++++|..-+.+..|
T Consensus 212 ~g~~~~~fat~T~~hqvR~YDt-----------------~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~F 274 (412)
T KOG3881|consen 212 EGSPNYKFATITRYHQVRLYDT-----------------RHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKF 274 (412)
T ss_pred CCCCCceEEEEecceeEEEecC-----------------cccCcceeEeccccCcceeeeecCCCcEEEEecccchhhee
Confidence 87 789999999999999998 35567888888888899999999999999999999999999
Q ss_pred ECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCC
Q 016982 232 DDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETG 279 (379)
Q Consensus 232 d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~ 279 (379)
|+++++.....+.+-.+.|+++..+|.+++++ +|-|..++|++....+
T Consensus 275 D~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrk 323 (412)
T KOG3881|consen 275 DLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRK 323 (412)
T ss_pred cccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccch
Confidence 99998866666888889999999999999999 8899999999987643
No 238
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.70 E-value=7.8e-12 Score=106.63 Aligned_cols=280 Identities=10% Similarity=0.115 Sum_probs=176.0
Q ss_pred EEEEecC----CeEEEEEe--cCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeC----CCeEEEEeccCC--ceeeeE
Q 016982 25 VAFCPNN----NEVHIYKL--IQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSH----DRNSYVWNQEGS--EWVPTL 92 (379)
Q Consensus 25 l~~~~~d----g~i~i~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~vw~~~~~--~~~~~~ 92 (379)
+++|+.. +.|++|++ +++++..+..+.. ......++++|++++|.+... ++.|..|++... ++...-
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~-~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAE-GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEE-SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecC-CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 4556655 78999998 4555555555432 344577999999999988876 468999988764 433333
Q ss_pred EeecCCCceeEEEECCCCCEEEEEeC-CCeEEEEEeecCCceeEE-EEEe---------ecCCcCEEEEEEcCCCcEEEE
Q 016982 93 VILRLNRAALCVQWSPKENKFAVGSG-AKTVCICYYEQENNWWVS-KLIR---------KRHDSSVTSVAWHPNNVFLAT 161 (379)
Q Consensus 93 ~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~-~~~~---------~~~~~~v~~~~~~p~~~~l~~ 161 (379)
...........++++|++++|+++.. +|.+.++++......... ..+. ........++.|+|+++++++
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 32324556678999999999999875 899999999875321111 1110 012346789999999998877
Q ss_pred eeC-CCeEEEEeccccccccccccCCCccCCcccce--EEEee-cCCcceEEEEECCCCCEEEEE-cCCCeEEEEECCCC
Q 016982 162 TST-DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQ--ILQLD-LSFSWAFGVKWSPSGNTLAYV-GHNSMIYFVDDVGP 236 (379)
Q Consensus 162 ~~~-d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~v~~~~~sp~~~~l~~~-~~d~~i~v~d~~~~ 236 (379)
... ...|.+|++.. ..++. ...+. ........++|+|+++++++. ..++.|.++++...
T Consensus 161 ~dlG~D~v~~~~~~~----------------~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~ 224 (345)
T PF10282_consen 161 PDLGADRVYVYDIDD----------------DTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPS 224 (345)
T ss_dssp EETTTTEEEEEEE-T----------------TS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT
T ss_pred EecCCCEEEEEEEeC----------------CCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeeccc
Confidence 643 45799998731 11111 22222 223457899999999987655 46788999988722
Q ss_pred C-c--eeeeeeee------cCCeeeEEEecCCcEEEEE--eCCCeEEEEecC-CCcEEEEEEecccccCCCCCccCCCcc
Q 016982 237 S-P--LAQNVAFR------DLPLRDVLFVSEKMVIGVG--FDCNPMVFAADE-TGIWTFIKFLDERKTSSSGPKYGSQFS 304 (379)
Q Consensus 237 ~-~--~~~~~~~~------~~~i~~~~~s~~~~~l~~~--~d~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (379)
. . .++.+... ......+.++|||++|.++ ..+.|.+|..+. .+..........
T Consensus 225 ~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~--------------- 289 (345)
T PF10282_consen 225 DGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT--------------- 289 (345)
T ss_dssp TTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE---------------
T ss_pred CCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC---------------
Confidence 1 1 11222111 1246789999999988755 455788999853 455555443211
Q ss_pred cccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEee-cCceEEEEeCC
Q 016982 305 EAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSG-LDGKIVTWDLE 369 (379)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~-~Dg~v~iW~~~ 369 (379)
....-..++ +++++ ++|+.+. .++.|.+|++.
T Consensus 290 ----------------------------~G~~Pr~~~-~s~~g----~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 290 ----------------------------GGKFPRHFA-FSPDG----RYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp ----------------------------SSSSEEEEE-E-TTS----SEEEEEETTTTEEEEEEEE
T ss_pred ----------------------------CCCCccEEE-EeCCC----CEEEEEecCCCeEEEEEEe
Confidence 122356777 67666 7777665 66899999875
No 239
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=4.1e-14 Score=124.89 Aligned_cols=220 Identities=13% Similarity=0.166 Sum_probs=141.6
Q ss_pred ceeccCcceeEEEeCCCCcEEEEEecC---CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEE-EeCCC--eE
Q 016982 5 AVHQFAQCITCHAWSPDHAMVAFCPNN---NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVT-VSHDR--NS 78 (379)
Q Consensus 5 ~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~--~i 78 (379)
.+..+...+...+|+|||+.|+..+.+ ..|++|++.+++.+.+.. ..+.+...+|+|||+.|+. .+.++ .|
T Consensus 193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~---~~g~~~~~~~SpDG~~la~~~~~~g~~~I 269 (430)
T PRK00178 193 TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN---FEGLNGAPAWSPDGSKLAFVLSKDGNPEI 269 (430)
T ss_pred EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC---CCCCcCCeEECCCCCEEEEEEccCCCceE
Confidence 355677889999999999999887643 369999998874444333 3334557899999998864 44444 58
Q ss_pred EEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeC-CC--eEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCC
Q 016982 79 YVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSG-AK--TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPN 155 (379)
Q Consensus 79 ~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 155 (379)
.+||+.+++... +..+........|+|||+.++..+. ++ .|+++++..++ ..+.. ..........|+|+
T Consensus 270 y~~d~~~~~~~~---lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~---~~~lt--~~~~~~~~~~~Spd 341 (430)
T PRK00178 270 YVMDLASRQLSR---VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR---AERVT--FVGNYNARPRLSAD 341 (430)
T ss_pred EEEECCCCCeEE---cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC---EEEee--cCCCCccceEECCC
Confidence 888998886433 2334455677899999998877664 34 45555665554 22222 11223345789999
Q ss_pred CcEEEEeeCC-C--eEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCC---CeEE
Q 016982 156 NVFLATTSTD-G--KCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHN---SMIY 229 (379)
Q Consensus 156 ~~~l~~~~~d-~--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~~i~ 229 (379)
+++++..+.+ + .|.++|+ .+++. ..+.. ........|+|||+.++..+.+ ..+.
T Consensus 342 g~~i~~~~~~~~~~~l~~~dl------------------~tg~~-~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~ 401 (430)
T PRK00178 342 GKTLVMVHRQDGNFHVAAQDL------------------QRGSV-RILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLM 401 (430)
T ss_pred CCEEEEEEccCCceEEEEEEC------------------CCCCE-EEccC-CCCCCCceECCCCCEEEEEEecCCceEEE
Confidence 9998877653 3 4777775 22222 22221 1122356899999998877643 3577
Q ss_pred EEECCCCCceeeeeeeecCCeeeEEEec
Q 016982 230 FVDDVGPSPLAQNVAFRDLPLRDVLFVS 257 (379)
Q Consensus 230 v~d~~~~~~~~~~~~~~~~~i~~~~~s~ 257 (379)
++++..... +.+..+.+.+...+|+|
T Consensus 402 ~~~~~g~~~--~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 402 LVSINGRVR--LPLPTAQGEVREPSWSP 427 (430)
T ss_pred EEECCCCce--EECcCCCCCcCCCccCC
Confidence 778755432 34444455677788876
No 240
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.68 E-value=1.5e-12 Score=104.13 Aligned_cols=262 Identities=11% Similarity=0.070 Sum_probs=175.4
Q ss_pred ccceeccCcceeEEEeCCCCcEEEEEec---CCeEEEEEecC--CceEEEEEeccCCCceEEEEEcCCCCEEEEEeC-CC
Q 016982 3 AIAVHQFAQCITCHAWSPDHAMVAFCPN---NNEVHIYKLIQ--EKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSH-DR 76 (379)
Q Consensus 3 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~i~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~ 76 (379)
..++....+.++-++|+|+++.|.++-. +|.|--|.++. +.+..+........+-..++++++|++++++.. .|
T Consensus 32 ~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g 111 (346)
T COG2706 32 LLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSG 111 (346)
T ss_pred hhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCc
Confidence 3445556788999999999998887754 57888888875 444554444333344478999999999988874 57
Q ss_pred eEEEEeccC-CceeeeEEeecCCCc----------eeEEEECCCCCEEEEEeC-CCeEEEEEeecCCceeEEEEEeecCC
Q 016982 77 NSYVWNQEG-SEWVPTLVILRLNRA----------ALCVQWSPKENKFAVGSG-AKTVCICYYEQENNWWVSKLIRKRHD 144 (379)
Q Consensus 77 ~i~vw~~~~-~~~~~~~~~~~~~~~----------v~~~~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~~~ 144 (379)
.|.++.++. +..........|.+. +....+.|+++++++..- -..|.+|++..+......... ....
T Consensus 112 ~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~-v~~G 190 (346)
T COG2706 112 SVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAE-VKPG 190 (346)
T ss_pred eEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccc-cCCC
Confidence 899999865 544444444445555 888999999999888764 346889999866522222222 2344
Q ss_pred cCEEEEEEcCCCcEEEEeeC-CCeEEEEeccccccccccccCCCccCCcccceEEE----eecCCcceEEEEECCCCCEE
Q 016982 145 SSVTSVAWHPNNVFLATTST-DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQ----LDLSFSWAFGVKWSPSGNTL 219 (379)
Q Consensus 145 ~~v~~~~~~p~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~sp~~~~l 219 (379)
..-+.|.|+|++++....++ +++|.+|.......++ +.-+.+.+ |.+ ..+...+..+|||++|
T Consensus 191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~-----------~~lQ~i~tlP~dF~g-~~~~aaIhis~dGrFL 258 (346)
T COG2706 191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKF-----------EELQTIDTLPEDFTG-TNWAAAIHISPDGRFL 258 (346)
T ss_pred CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceE-----------EEeeeeccCccccCC-CCceeEEEECCCCCEE
Confidence 55688999999998877665 8999999873211100 00111111 112 3457789999999999
Q ss_pred EEEc-CCCeEEEEECCCCCceeeee---eeecCCeeeEEEecCCcEEEEEe--CCCeEEEEecC
Q 016982 220 AYVG-HNSMIYFVDDVGPSPLAQNV---AFRDLPLRDVLFVSEKMVIGVGF--DCNPMVFAADE 277 (379)
Q Consensus 220 ~~~~-~d~~i~v~d~~~~~~~~~~~---~~~~~~i~~~~~s~~~~~l~~~~--d~~~~i~~~~~ 277 (379)
.++. ....|.+|.+......+..+ ..++...+...|+++|++|++.. ++.+.+|..+.
T Consensus 259 YasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 259 YASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred EEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 8775 34578888766543322322 23344578999999999888553 34688888774
No 241
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=5.7e-14 Score=122.52 Aligned_cols=227 Identities=14% Similarity=0.083 Sum_probs=140.0
Q ss_pred eeccCcceeEEEeCCCCcE--EE-EEecC--CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeC-CC---
Q 016982 6 VHQFAQCITCHAWSPDHAM--VA-FCPNN--NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSH-DR--- 76 (379)
Q Consensus 6 ~~~~~~~i~~~~~s~~~~~--l~-~~~~d--g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--- 76 (379)
+......+..-+|||||+. ++ +...+ ..|++.++.+++.+.+..+.+ .....+|+|||+.|+..+. +|
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g---~~~~p~wSPDG~~Laf~s~~~g~~d 256 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQG---NQLMPTFSPRKKLLAFISDRYGNPD 256 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCC---CccceEECCCCCEEEEEECCCCCcc
Confidence 3444556778899999975 32 33333 468888888775455554443 4456899999998877653 22
Q ss_pred -eEEEEeccCCc--eeeeEEeecCCCceeEEEECCCCCEEEEEe-CCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEE
Q 016982 77 -NSYVWNQEGSE--WVPTLVILRLNRAALCVQWSPKENKFAVGS-GAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAW 152 (379)
Q Consensus 77 -~i~vw~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 152 (379)
.+.+|++..+. ....+. ..........+|+|||+.|+..+ .+|...+|.+.........+.+ ..+...+....|
T Consensus 257 i~~~~~~~~~g~~g~~~~lt-~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l-t~~~~~~~~p~w 334 (428)
T PRK01029 257 LFIQSFSLETGAIGKPRRLL-NEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL-TKKYRNSSCPAW 334 (428)
T ss_pred eeEEEeecccCCCCcceEee-cCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe-ccCCCCccceeE
Confidence 34447766531 111221 12223446789999999888766 4666666655432100012333 344456678999
Q ss_pred cCCCcEEEEeeCC---CeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcC---CC
Q 016982 153 HPNNVFLATTSTD---GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGH---NS 226 (379)
Q Consensus 153 ~p~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---d~ 226 (379)
+|||+.|+..+.+ ..|.+||+ ..++. ..+......+..+.|+|||+.|+..+. ..
T Consensus 335 SPDG~~Laf~~~~~g~~~I~v~dl------------------~~g~~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~ 395 (428)
T PRK01029 335 SPDGKKIAFCSVIKGVRQICVYDL------------------ATGRD-YQLTTSPENKESPSWAIDSLHLVYSAGNSNES 395 (428)
T ss_pred CCCCCEEEEEEcCCCCcEEEEEEC------------------CCCCe-EEccCCCCCccceEECCCCCEEEEEECCCCCc
Confidence 9999988876543 36888886 33333 333322335677999999998876443 35
Q ss_pred eEEEEECCCCCceeeeeeeecCCeeeEEEecC
Q 016982 227 MIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSE 258 (379)
Q Consensus 227 ~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~ 258 (379)
.|+++|+.+++. ..+....+.+...+|+|-
T Consensus 396 ~L~~vdl~~g~~--~~Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 396 ELYLISLITKKT--RKIVIGSGEKRFPSWGAF 425 (428)
T ss_pred eEEEEECCCCCE--EEeecCCCcccCceecCC
Confidence 788899877653 333334455778888874
No 242
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.68 E-value=3.9e-14 Score=124.93 Aligned_cols=218 Identities=17% Similarity=0.262 Sum_probs=140.8
Q ss_pred ceeccCcceeEEEeCCCCcEEEEEecC---CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEE-EeCCC--eE
Q 016982 5 AVHQFAQCITCHAWSPDHAMVAFCPNN---NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVT-VSHDR--NS 78 (379)
Q Consensus 5 ~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~--~i 78 (379)
.+..+...+...+|+|||++|+++..+ ..|++|++.+++...+ ..+...+.+++|+|+|+.|+. .+.++ .|
T Consensus 184 ~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~---~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i 260 (417)
T TIGR02800 184 TITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV---ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDI 260 (417)
T ss_pred EeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe---ecCCCCccceEECCCCCEEEEEECCCCCccE
Confidence 345566778899999999999987653 4799999988743333 334455677999999987764 44443 58
Q ss_pred EEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeC-CC--eEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCC
Q 016982 79 YVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSG-AK--TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPN 155 (379)
Q Consensus 79 ~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 155 (379)
.+|++.++..... ..+........|+|+|+.|+..+. ++ .|+++++..+. ...+ ..+......+.|+|+
T Consensus 261 ~~~d~~~~~~~~l---~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~----~~~l-~~~~~~~~~~~~spd 332 (417)
T TIGR02800 261 YVMDLDGKQLTRL---TNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE----VRRL-TFRGGYNASPSWSPD 332 (417)
T ss_pred EEEECCCCCEEEC---CCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC----EEEe-ecCCCCccCeEECCC
Confidence 8999988763322 234444567799999998877664 33 46666665554 2333 334556678899999
Q ss_pred CcEEEEeeCCC---eEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCC---eEE
Q 016982 156 NVFLATTSTDG---KCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNS---MIY 229 (379)
Q Consensus 156 ~~~l~~~~~d~---~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~---~i~ 229 (379)
+++++..+.++ .|.+||+. .+. ...+... .......|+|+|++|+..+.++ .++
T Consensus 333 g~~i~~~~~~~~~~~i~~~d~~------------------~~~-~~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~ 392 (417)
T TIGR02800 333 GDLIAFVHREGGGFNIAVMDLD------------------GGG-ERVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLG 392 (417)
T ss_pred CCEEEEEEccCCceEEEEEeCC------------------CCC-eEEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEE
Confidence 99999887765 67888762 221 2222211 1234568999999988876543 456
Q ss_pred EEECCCCCceeeeeeeecCCeeeEEE
Q 016982 230 FVDDVGPSPLAQNVAFRDLPLRDVLF 255 (379)
Q Consensus 230 v~d~~~~~~~~~~~~~~~~~i~~~~~ 255 (379)
+.+..... ...+..+...+..++|
T Consensus 393 ~~~~~g~~--~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 393 LVSTDGRF--RARLPLGNGDVREPAW 416 (417)
T ss_pred EEECCCce--eeECCCCCCCcCCCCC
Confidence 66644322 2334333444555555
No 243
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.67 E-value=1.8e-13 Score=120.83 Aligned_cols=199 Identities=17% Similarity=0.236 Sum_probs=133.7
Q ss_pred eEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC---CeEEEEeccCCceeeeEEeecCCCceeEEEECCC
Q 016982 33 EVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD---RNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPK 109 (379)
Q Consensus 33 ~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 109 (379)
.|.++|.... ....+..+...+...+|+|+|++|+.+..+ ..|++||+.+++.... ..+...+.+++|+|+
T Consensus 171 ~l~~~d~~g~---~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~---~~~~~~~~~~~~spD 244 (417)
T TIGR02800 171 ELQVADYDGA---NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV---ASFPGMNGAPAFSPD 244 (417)
T ss_pred eEEEEcCCCC---CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe---ecCCCCccceEECCC
Confidence 5778887654 234444566678899999999999887643 4799999998864332 234556677999999
Q ss_pred CCEEEEE-eCCC--eEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC-CC--eEEEEeccccccccccc
Q 016982 110 ENKFAVG-SGAK--TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST-DG--KCRVFSTFIKGVDIKEK 183 (379)
Q Consensus 110 ~~~l~~~-~~d~--~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~~ 183 (379)
|+.|+.. +.++ .|++|++.++. .+.+ ..+........|+|+++.|+..+. .+ .|.++|+
T Consensus 245 g~~l~~~~~~~~~~~i~~~d~~~~~----~~~l-~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~---------- 309 (417)
T TIGR02800 245 GSKLAVSLSKDGNPDIYVMDLDGKQ----LTRL-TNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDA---------- 309 (417)
T ss_pred CCEEEEEECCCCCccEEEEECCCCC----EEEC-CCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEEC----------
Confidence 9977654 4444 47777777665 2333 344444557789999988876654 33 4666664
Q ss_pred cCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCC---eEEEEECCCCCceeeeeeeecCCeeeEEEecCCc
Q 016982 184 KEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNS---MIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKM 260 (379)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~---~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 260 (379)
..++ ...+..+......+.|+|+|++++.++.++ .|.+||+.++.. ..+.. ........|+|+|+
T Consensus 310 --------~~~~-~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~--~~l~~-~~~~~~p~~spdg~ 377 (417)
T TIGR02800 310 --------DGGE-VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE--RVLTD-TGLDESPSFAPNGR 377 (417)
T ss_pred --------CCCC-EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe--EEccC-CCCCCCceECCCCC
Confidence 2222 233443445567889999999999887765 789999877542 33332 22345678999998
Q ss_pred EEEE
Q 016982 261 VIGV 264 (379)
Q Consensus 261 ~l~~ 264 (379)
.|+.
T Consensus 378 ~l~~ 381 (417)
T TIGR02800 378 MILY 381 (417)
T ss_pred EEEE
Confidence 7773
No 244
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=5.8e-14 Score=123.45 Aligned_cols=219 Identities=14% Similarity=0.183 Sum_probs=136.4
Q ss_pred eeccCcceeEEEeCCCCcEEEEEecC---CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEE-EeCCCe--EE
Q 016982 6 VHQFAQCITCHAWSPDHAMVAFCPNN---NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVT-VSHDRN--SY 79 (379)
Q Consensus 6 ~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~--i~ 79 (379)
+..+...+.+..|+|||+.|+..+.+ ..|++||+.+++.+.+..+.+ .....+|+|||+.|+. .+.++. |.
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g---~~~~~~wSPDG~~La~~~~~~g~~~Iy 289 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPG---INGAPRFSPDGKKLALVLSKDGQPEIY 289 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCC---CcCCeeECCCCCEEEEEEeCCCCeEEE
Confidence 44556678899999999999877542 368889988874444443333 3457899999998765 455564 88
Q ss_pred EEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeC-CCe--EEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCC
Q 016982 80 VWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSG-AKT--VCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNN 156 (379)
Q Consensus 80 vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~--v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 156 (379)
++|+.+++.... ..+.......+|+|||+.|+..+. ++. |+++|+.+++ . +.+ ..........+|+|||
T Consensus 290 ~~dl~tg~~~~l---t~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~---~-~~L-t~~g~~~~~~~~SpDG 361 (448)
T PRK04792 290 VVDIATKALTRI---TRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK---V-SRL-TFEGEQNLGGSITPDG 361 (448)
T ss_pred EEECCCCCeEEC---ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC---E-EEE-ecCCCCCcCeeECCCC
Confidence 888888764332 234455678899999998877664 444 4444555444 2 222 1122223457899999
Q ss_pred cEEEEeeC-CCeEEE--EeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCC-C--eEEE
Q 016982 157 VFLATTST-DGKCRV--FSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHN-S--MIYF 230 (379)
Q Consensus 157 ~~l~~~~~-d~~i~v--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~--~i~v 230 (379)
++|+..+. ++...| +|+ ..++. ..+... .......|+|+|+.|+..+.+ + .+++
T Consensus 362 ~~l~~~~~~~g~~~I~~~dl------------------~~g~~-~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~ 421 (448)
T PRK04792 362 RSMIMVNRTNGKFNIARQDL------------------ETGAM-QVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAA 421 (448)
T ss_pred CEEEEEEecCCceEEEEEEC------------------CCCCe-EEccCC-CCCCCceECCCCCEEEEEEecCCceEEEE
Confidence 98877655 343444 554 22222 222211 112345899999988776543 3 4777
Q ss_pred EECCCCCceeeeeeeecCCeeeEEEec
Q 016982 231 VDDVGPSPLAQNVAFRDLPLRDVLFVS 257 (379)
Q Consensus 231 ~d~~~~~~~~~~~~~~~~~i~~~~~s~ 257 (379)
++..... ...+..+.+.+...+|+|
T Consensus 422 ~~~~G~~--~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 422 VSIDGRF--KARLPAGQGEVKSPAWSP 446 (448)
T ss_pred EECCCCc--eEECcCCCCCcCCCccCC
Confidence 7864432 345554556677888887
No 245
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=1.9e-14 Score=115.25 Aligned_cols=250 Identities=11% Similarity=0.076 Sum_probs=171.9
Q ss_pred CCceEEEEEcCCC--CEEEEEeCCCeEEEEeccCCceeeeE----EeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEe
Q 016982 54 DQIVSGIDWSVRS--NRIVTVSHDRNSYVWNQEGSEWVPTL----VILRLNRAALCVQWSPKENKFAVGSGAKTVCICYY 127 (379)
Q Consensus 54 ~~~v~~~~~~~~~--~~l~~~~~d~~i~vw~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~ 127 (379)
...|..++|.-++ +.|...+.+..+..+.+....+.... .......+|..+... ...|++|-.+|.+.+|..
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEec
Confidence 4567888887665 34555556667777777766544443 222334566666554 346778888999999998
Q ss_pred ecCCc--eeEEEEEeecCCcCEEEEEEcCCC-cEEEEeeCC--CeEEEEeccccccccccccCCCccCCcccceEEEeec
Q 016982 128 EQENN--WWVSKLIRKRHDSSVTSVAWHPNN-VFLATTSTD--GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDL 202 (379)
Q Consensus 128 ~~~~~--~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d--~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (379)
..+.. ..+.. ......+..+.-+|.. ..+++|+.. ..+.+||+. ..+++.+-..
T Consensus 133 k~~d~hss~l~~---la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle------------------~~~qiw~aKN 191 (412)
T KOG3881|consen 133 KSGDLHSSKLIK---LATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLE------------------QSKQIWSAKN 191 (412)
T ss_pred cCCcccccccee---eecCCceeeeccCCCCCceEecCchhcccceeeeecc------------------cceeeeeccC
Confidence 85431 11111 2233556667666655 456668888 889999973 2222221111
Q ss_pred ---------CCcceEEEEECCC--CCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEE-EeCCCe
Q 016982 203 ---------SFSWAFGVKWSPS--GNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGV-GFDCNP 270 (379)
Q Consensus 203 ---------~~~~v~~~~~sp~--~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-~~d~~~ 270 (379)
-.-+++++.|-|. ...|+++..-+.+++||.+.+..++..+.....+++++...|+|++|.+ ...+.+
T Consensus 192 vpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l 271 (412)
T KOG3881|consen 192 VPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQL 271 (412)
T ss_pred CCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchh
Confidence 0235788899887 7889999999999999999888888888888899999999999998874 466677
Q ss_pred EEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcc
Q 016982 271 MVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSR 350 (379)
Q Consensus 271 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 350 (379)
..|+.+... +.. . .+.|-.+.|.++.++ |.
T Consensus 272 ~~FD~r~~k---l~g-----------------------~-------------------~~kg~tGsirsih~h-----p~ 301 (412)
T KOG3881|consen 272 AKFDLRGGK---LLG-----------------------C-------------------GLKGITGSIRSIHCH-----PT 301 (412)
T ss_pred heecccCce---eec-----------------------c-------------------ccCCccCCcceEEEc-----CC
Confidence 777765432 111 0 125677889999865 44
Q ss_pred cceEEEeecCceEEEEeCCCcccccc
Q 016982 351 ITRFTTSGLDGKIVTWDLESQEDLLN 376 (379)
Q Consensus 351 ~~~l~t~~~Dg~v~iW~~~~~~~~~~ 376 (379)
.++||+||.|..|||+|+.+.+.+..
T Consensus 302 ~~~las~GLDRyvRIhD~ktrkll~k 327 (412)
T KOG3881|consen 302 HPVLASCGLDRYVRIHDIKTRKLLHK 327 (412)
T ss_pred CceEEeeccceeEEEeecccchhhhh
Confidence 58999999999999999999665543
No 246
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=2.8e-13 Score=119.20 Aligned_cols=198 Identities=17% Similarity=0.158 Sum_probs=124.7
Q ss_pred eEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC---CeEEEEeccCCceeeeEEeecCCCceeEEEECCC
Q 016982 33 EVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD---RNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPK 109 (379)
Q Consensus 33 ~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 109 (379)
.|.++|....+ .+.+..+...+.+..|+|||+.|+..+.+ ..|.+||+.+++.... ....+......|+||
T Consensus 199 ~l~i~d~dG~~---~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l---t~~~g~~~~~~wSPD 272 (448)
T PRK04792 199 QLMIADYDGYN---EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV---TSFPGINGAPRFSPD 272 (448)
T ss_pred EEEEEeCCCCC---ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe---cCCCCCcCCeeECCC
Confidence 56777776642 23344556788899999999998876533 2588999988764332 222344457899999
Q ss_pred CCEEEEE-eCCCe--EEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC-CCe--EEEEeccccccccccc
Q 016982 110 ENKFAVG-SGAKT--VCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST-DGK--CRVFSTFIKGVDIKEK 183 (379)
Q Consensus 110 ~~~l~~~-~~d~~--v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d~~--i~v~d~~~~~~~~~~~ 183 (379)
|+.|+.. +.++. |+++|+.++. .+.+ ..+.......+|+||++.|+..+. ++. |.++|+
T Consensus 273 G~~La~~~~~~g~~~Iy~~dl~tg~----~~~l-t~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl---------- 337 (448)
T PRK04792 273 GKKLALVLSKDGQPEIYVVDIATKA----LTRI-TRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNL---------- 337 (448)
T ss_pred CCEEEEEEeCCCCeEEEEEECCCCC----eEEC-ccCCCCccceEECCCCCEEEEEECCCCCceEEEEEC----------
Confidence 9988764 55665 6666666654 2333 344555678899999988876654 444 444453
Q ss_pred cCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcC-CC--eEEEEECCCCCceeeeeeeecCCeeeEEEecCCc
Q 016982 184 KEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGH-NS--MIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKM 260 (379)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 260 (379)
..++. ..+..........+|+|||++|+..+. ++ .|.++|+.++.. ..+... .......|+|||+
T Consensus 338 --------~~g~~-~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~--~~lt~~-~~d~~ps~spdG~ 405 (448)
T PRK04792 338 --------ASGKV-SRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM--QVLTST-RLDESPSVAPNGT 405 (448)
T ss_pred --------CCCCE-EEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe--EEccCC-CCCCCceECCCCC
Confidence 22322 222222223345799999999887654 33 466678777652 233322 2233568999999
Q ss_pred EEE
Q 016982 261 VIG 263 (379)
Q Consensus 261 ~l~ 263 (379)
.|+
T Consensus 406 ~I~ 408 (448)
T PRK04792 406 MVI 408 (448)
T ss_pred EEE
Confidence 877
No 247
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=5.1e-13 Score=118.01 Aligned_cols=211 Identities=14% Similarity=0.113 Sum_probs=133.7
Q ss_pred eEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC---CeEEEEeccCCceeeeEEeecCCCceeEEEECCC
Q 016982 33 EVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD---RNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPK 109 (379)
Q Consensus 33 ~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 109 (379)
.|.++|.+.. ....+..+...+...+|+|||+.|+..+.+ ..|.+|++.+++.... ....+.+....|+||
T Consensus 180 ~l~~~d~~g~---~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l---~~~~g~~~~~~~SpD 253 (430)
T PRK00178 180 TLQRSDYDGA---RAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI---TNFEGLNGAPAWSPD 253 (430)
T ss_pred EEEEECCCCC---CceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc---cCCCCCcCCeEECCC
Confidence 4777777664 233444566788999999999998876643 3699999998864332 223445567899999
Q ss_pred CCEEEEE-eCCC--eEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC-CC--eEEEEeccccccccccc
Q 016982 110 ENKFAVG-SGAK--TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST-DG--KCRVFSTFIKGVDIKEK 183 (379)
Q Consensus 110 ~~~l~~~-~~d~--~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~~ 183 (379)
|+.|+.. ..++ .|+++|+.++. .+.+ ..+........|+||++.++..+. ++ .|.++++
T Consensus 254 G~~la~~~~~~g~~~Iy~~d~~~~~----~~~l-t~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~---------- 318 (430)
T PRK00178 254 GSKLAFVLSKDGNPEIYVMDLASRQ----LSRV-TNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNV---------- 318 (430)
T ss_pred CCEEEEEEccCCCceEEEEECCCCC----eEEc-ccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEEC----------
Confidence 9988754 4444 57777877765 2333 345555667899999988776654 34 4555554
Q ss_pred cCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCC-C--eEEEEECCCCCceeeeeeeecCCeeeEEEecCCc
Q 016982 184 KEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHN-S--MIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKM 260 (379)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~--~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 260 (379)
..++. ..+...........|+|+|++|+..+.+ + .|.++|+.++.. ..+.. ........|+|||+
T Consensus 319 --------~~g~~-~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~--~~lt~-~~~~~~p~~spdg~ 386 (430)
T PRK00178 319 --------NGGRA-ERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV--RILTD-TSLDESPSVAPNGT 386 (430)
T ss_pred --------CCCCE-EEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE--EEccC-CCCCCCceECCCCC
Confidence 22222 2222112223457899999999877643 3 588899887653 33332 22334678999999
Q ss_pred EEEEE-e-CCCeEEEEec
Q 016982 261 VIGVG-F-DCNPMVFAAD 276 (379)
Q Consensus 261 ~l~~~-~-d~~~~i~~~~ 276 (379)
.++.. . ++...++..+
T Consensus 387 ~i~~~~~~~g~~~l~~~~ 404 (430)
T PRK00178 387 MLIYATRQQGRGVLMLVS 404 (430)
T ss_pred EEEEEEecCCceEEEEEE
Confidence 88733 2 3334444433
No 248
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=2.1e-13 Score=117.86 Aligned_cols=267 Identities=15% Similarity=0.279 Sum_probs=183.5
Q ss_pred CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCc-------------eEEEEEeccCCCceEEEEEcCCCCEEEEEeCCC
Q 016982 10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEK-------------WEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDR 76 (379)
Q Consensus 10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~-------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 76 (379)
.....|++|+.+..++|+|+.||.+++..+.+.. ...-+++.+|...|.-+.|+.+.+.|-+...+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 4567899999999999999999999999886531 223457899999999999999999999999999
Q ss_pred eEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCC
Q 016982 77 NSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNN 156 (379)
Q Consensus 77 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 156 (379)
.|.+|-+-.+.+...+.....++.|.+++|+.+|..++..-.||.|.+=.++....|. +.+ .+ .....+.|++|.
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwg--KeL-kg--~~l~hv~ws~D~ 168 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWG--KEL-KG--QLLAHVLWSEDL 168 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecc--hhc-ch--heccceeecccH
Confidence 9999999999887777656677889999999999999999999998876655443221 111 00 112244555555
Q ss_pred cEEEEeeCCCeEEEEe--------------ccc-----------cccccccccC-CCccC------------------Cc
Q 016982 157 VFLATTSTDGKCRVFS--------------TFI-----------KGVDIKEKKE-GTSSD------------------TK 192 (379)
Q Consensus 157 ~~l~~~~~d~~i~v~d--------------~~~-----------~~~~~~~~~~-~~~~~------------------~~ 192 (379)
+.++.+-.+|.+.+|| +.+ .++.....+- +..++ ..
T Consensus 169 ~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eN 248 (1189)
T KOG2041|consen 169 EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEN 248 (1189)
T ss_pred HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcC
Confidence 5444444444444444 010 0000000000 00000 01
Q ss_pred ccceEEEeecCCcceEEEEECCCCCEEEEEcCC---------CeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE
Q 016982 193 FGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHN---------SMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG 263 (379)
Q Consensus 193 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---------~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 263 (379)
...++. +. ..-.+....|+++|..|+.++.+ +.|++|..-. ..+.+++..+..|++++|-..|-.++
T Consensus 249 D~~Pvv-~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G--~i~gtlkvpg~~It~lsWEg~gLriA 324 (1189)
T KOG2041|consen 249 DPEPVV-VD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYG--HIVGTLKVPGSCITGLSWEGTGLRIA 324 (1189)
T ss_pred CCCCeE-Ee-cccEeecceecCCCcEEEEccCcccccCccccceEEEeccch--hheEEEecCCceeeeeEEcCCceEEE
Confidence 111111 11 12357889999999999998754 3567775433 24577777788999999998888999
Q ss_pred EEeCCCeEEEEecCCCcEEEEE
Q 016982 264 VGFDCNPMVFAADETGIWTFIK 285 (379)
Q Consensus 264 ~~~d~~~~i~~~~~~~~~~~~~ 285 (379)
.+-|+.+++-+......|-+..
T Consensus 325 ~AvdsfiyfanIRP~ykWgy~e 346 (1189)
T KOG2041|consen 325 IAVDSFIYFANIRPEYKWGYIE 346 (1189)
T ss_pred EEecceEEEEeecccceEEEee
Confidence 8899999988888888887654
No 249
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=1.1e-12 Score=114.50 Aligned_cols=223 Identities=13% Similarity=0.104 Sum_probs=134.1
Q ss_pred CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCE--E-EEEeCC--CeEEEEeccCCceeeeEEeecCCCceeEEEE
Q 016982 32 NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNR--I-VTVSHD--RNSYVWNQEGSEWVPTLVILRLNRAALCVQW 106 (379)
Q Consensus 32 g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l-~~~~~d--~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~ 106 (379)
..|.+.|.+.++. +.+......+.+.+|+|||+. + ++...+ ..|.+.++.+++.... ....+.....+|
T Consensus 165 ~~l~~~d~dG~~~---~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l---t~~~g~~~~p~w 238 (428)
T PRK01029 165 GELWSVDYDGQNL---RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI---LALQGNQLMPTF 238 (428)
T ss_pred ceEEEEcCCCCCc---eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe---ecCCCCccceEE
Confidence 3677777776532 334444556778899999975 3 233333 3588889888864333 234455667899
Q ss_pred CCCCCEEEEEeC-CC--eE--EEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee-CCCeEEEEecccccccc
Q 016982 107 SPKENKFAVGSG-AK--TV--CICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS-TDGKCRVFSTFIKGVDI 180 (379)
Q Consensus 107 ~~~~~~l~~~~~-d~--~v--~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~d~~i~v~d~~~~~~~~ 180 (379)
+|||+.|+..+. +| .+ .+|++..+......+.. ..........+|+|||+.|+..+ .+|...+|.+. .
T Consensus 239 SPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt-~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~-----~ 312 (428)
T PRK01029 239 SPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLL-NEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQ-----I 312 (428)
T ss_pred CCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEee-cCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEE-----C
Confidence 999998887653 23 23 33555542111122222 23333446789999999888765 46665666431 0
Q ss_pred ccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCC---CeEEEEECCCCCceeeeeeeecCCeeeEEEec
Q 016982 181 KEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHN---SMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVS 257 (379)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~ 257 (379)
...+.....+..+...+....|+|||+.|+..+.+ ..|.+||+.+++. ..+......+..+.|+|
T Consensus 313 ----------~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~--~~Lt~~~~~~~~p~wSp 380 (428)
T PRK01029 313 ----------DPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD--YQLTTSPENKESPSWAI 380 (428)
T ss_pred ----------cccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe--EEccCCCCCccceEECC
Confidence 01112233344444556789999999998876543 4799999987753 33333334567899999
Q ss_pred CCcEEEE-Ee-C--CCeEEEEecCC
Q 016982 258 EKMVIGV-GF-D--CNPMVFAADET 278 (379)
Q Consensus 258 ~~~~l~~-~~-d--~~~~i~~~~~~ 278 (379)
||+.|+. +. . ..+.+++.+..
T Consensus 381 DG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 381 DSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred CCCEEEEEECCCCCceEEEEECCCC
Confidence 9998773 32 2 23445554443
No 250
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.62 E-value=3.1e-11 Score=96.67 Aligned_cols=236 Identities=10% Similarity=0.048 Sum_probs=152.8
Q ss_pred CCeEEEEEecCCc--eEEEEEeccCCCceEEEEEcCCCCEEEEEeC---CCeEEEEeccC--CceeeeEEeecCCCceeE
Q 016982 31 NNEVHIYKLIQEK--WEKLHVLQKHDQIVSGIDWSVRSNRIVTVSH---DRNSYVWNQEG--SEWVPTLVILRLNRAALC 103 (379)
Q Consensus 31 dg~i~i~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~vw~~~~--~~~~~~~~~~~~~~~v~~ 103 (379)
+.-|++|++.+.. ...+. +-.+....+-|+|+|+.+.|.++-. +|.|.-|.++. |++...-.......+...
T Consensus 15 s~gI~v~~ld~~~g~l~~~~-~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~y 93 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQ-LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCY 93 (346)
T ss_pred CCceEEEEEeCcccccchhh-hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeE
Confidence 4679999998542 22222 2335567789999999999988764 46687777765 443222221222344588
Q ss_pred EEECCCCCEEEEEeC-CCeEEEEEeecCC-ceeEEEEEeecCCcC----------EEEEEEcCCCcEEEEeeC-CCeEEE
Q 016982 104 VQWSPKENKFAVGSG-AKTVCICYYEQEN-NWWVSKLIRKRHDSS----------VTSVAWHPNNVFLATTST-DGKCRV 170 (379)
Q Consensus 104 ~~~~~~~~~l~~~~~-d~~v~i~~~~~~~-~~~~~~~~~~~~~~~----------v~~~~~~p~~~~l~~~~~-d~~i~v 170 (379)
++++++|++++++.. .|.|.++-++... .+..... ..|.+. +....+.|++++|++..- ...|.+
T Consensus 94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~--~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~ 171 (346)
T COG2706 94 VSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQV--VKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFL 171 (346)
T ss_pred EEECCCCCEEEEEEccCceEEEEEcccCCccccceee--eecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEE
Confidence 999999999999876 6789998886633 2222222 234444 888999999999988763 346899
Q ss_pred EeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEc-CCCeEEEEECCCCCceeeeeeee---
Q 016982 171 FSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVG-HNSMIYFVDDVGPSPLAQNVAFR--- 246 (379)
Q Consensus 171 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~--- 246 (379)
|++...... ......+ ......+.+.|+|++++..... -+++|.+|........+..++.+
T Consensus 172 y~~~dg~L~--------------~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tl 236 (346)
T COG2706 172 YDLDDGKLT--------------PADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTL 236 (346)
T ss_pred EEcccCccc--------------ccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccC
Confidence 987311100 0001111 2244578999999999876654 68999999887743223333321
Q ss_pred ------cCCeeeEEEecCCcEEEEEeCC--CeEEEEecCC-CcEEEE
Q 016982 247 ------DLPLRDVLFVSEKMVIGVGFDC--NPMVFAADET-GIWTFI 284 (379)
Q Consensus 247 ------~~~i~~~~~s~~~~~l~~~~d~--~~~i~~~~~~-~~~~~~ 284 (379)
.....++..++||++|.++..+ .|.+|..+.. +...+.
T Consensus 237 P~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~ 283 (346)
T COG2706 237 PEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELV 283 (346)
T ss_pred ccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEE
Confidence 2346778999999999987544 6777877765 434443
No 251
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.59 E-value=2e-12 Score=100.15 Aligned_cols=243 Identities=14% Similarity=0.119 Sum_probs=159.9
Q ss_pred ceeEEEeCCCCcEEEEEec------------CCeEEEEEecCCceEEEEEec-cCCCceEEEEEcC---CCC-EEEEEeC
Q 016982 12 CITCHAWSPDHAMVAFCPN------------NNEVHIYKLIQEKWEKLHVLQ-KHDQIVSGIDWSV---RSN-RIVTVSH 74 (379)
Q Consensus 12 ~i~~~~~s~~~~~l~~~~~------------dg~i~i~~~~~~~~~~~~~~~-~~~~~v~~~~~~~---~~~-~l~~~~~ 74 (379)
++.+++-.+ +.||+|++ .|.+.+|++...+..+..+++ .....+..+.|.- +|. .++-+..
T Consensus 16 ~~C~l~~~~--~vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a 93 (339)
T KOG0280|consen 16 PICCLCHTR--NVLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHA 93 (339)
T ss_pred Ccccccccc--ceEEEeeEEecCCCCchheeccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccc
Confidence 444444333 37777743 467889998875433322222 1234566777753 344 4566677
Q ss_pred CCeEEEEeccCCceeeeEEeec----CCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEE
Q 016982 75 DRNSYVWNQEGSEWVPTLVILR----LNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSV 150 (379)
Q Consensus 75 d~~i~vw~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~ 150 (379)
.|.|.++..........+.... ......++.|++.+..++++-.+|.+.+.+..... ....+.. +.|.-++.-.
T Consensus 94 ~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~-le~vq~w-k~He~E~Wta 171 (339)
T KOG0280|consen 94 RGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMV-LEKVQTW-KVHEFEAWTA 171 (339)
T ss_pred cceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceee-eeecccc-cccceeeeee
Confidence 8899999876543222221110 01135678899999999999999999854443332 1112234 7898899999
Q ss_pred EEcCCC-cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEE-eecCCcceEEEEECC-CCCEEEEEcCCCe
Q 016982 151 AWHPNN-VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQ-LDLSFSWAFGVKWSP-SGNTLAYVGHNSM 227 (379)
Q Consensus 151 ~~~p~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~sp-~~~~l~~~~~d~~ 227 (379)
.|+... +.+.+|+.|+.+..||++ -.++.+.. .+.|...|.++.-+| .+.++++|+.|..
T Consensus 172 ~f~~~~pnlvytGgDD~~l~~~D~R-----------------~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~ 234 (339)
T KOG0280|consen 172 KFSDKEPNLVYTGGDDGSLSCWDIR-----------------IPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC 234 (339)
T ss_pred ecccCCCceEEecCCCceEEEEEec-----------------CCcceeeecceeeecceEEEecCCCCCceEEEeccccc
Confidence 997644 789999999999999982 12333333 456778899998887 5889999999999
Q ss_pred EEEEECCCCCceeeeeeeecCCeeeEEEecC--CcEEEEEeCCCeEEEEec
Q 016982 228 IYFVDDVGPSPLAQNVAFRDLPLRDVLFVSE--KMVIGVGFDCNPMVFAAD 276 (379)
Q Consensus 228 i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~d~~~~i~~~~ 276 (379)
|++||.++..+.+.... -.+.|+.+.++|. +++|+++.-+...+.+..
T Consensus 235 i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~ 284 (339)
T KOG0280|consen 235 IRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSS 284 (339)
T ss_pred eeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEec
Confidence 99999997654444333 3578999999994 456666666666665544
No 252
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.59 E-value=2.6e-14 Score=123.61 Aligned_cols=303 Identities=13% Similarity=0.139 Sum_probs=200.7
Q ss_pred cCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEecc-CCCceEEEEEcCCC--CEEEEEeCCCeEEEEeccC
Q 016982 9 FAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQK-HDQIVSGIDWSVRS--NRIVTVSHDRNSYVWNQEG 85 (379)
Q Consensus 9 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--~~l~~~~~d~~i~vw~~~~ 85 (379)
..+++.++..+|.|+-+|.+++-| +.+.|+... +.+.+-+.. ..-.|-...|+|.. .+-++......-.+|++..
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p-~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ 100 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDP-FTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAK 100 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcC-eEEEeccCC-CCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhc
Confidence 357888999999999999988754 666677654 122222221 12246678888764 3434444445567898854
Q ss_pred C-ceeeeEEeecCCCceeEEEECCC-CCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee
Q 016982 86 S-EWVPTLVILRLNRAALCVQWSPK-ENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS 163 (379)
Q Consensus 86 ~-~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 163 (379)
. .....+...+|...++.+.|+|. ...+++++.|-.+..||++.... ..... .........++|+.....+.+.+
T Consensus 101 ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~--p~ys~-~~w~s~asqVkwnyk~p~vlass 177 (1081)
T KOG0309|consen 101 SSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR--PFYST-SSWRSAASQVKWNYKDPNVLASS 177 (1081)
T ss_pred CCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc--ceeee-ecccccCceeeecccCcchhhhc
Confidence 3 22234556789999999999995 46889999999999999998763 12222 34445567889987665566667
Q ss_pred CCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCceeee
Q 016982 164 TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSP-SGNTLAYVGHNSMIYFVDDVGPSPLAQN 242 (379)
Q Consensus 164 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 242 (379)
....|++||+ ..-+.++..+.+|...|..++|.. ....+.+++.|++|++||..+.......
T Consensus 178 hg~~i~vwd~-----------------r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~ 240 (1081)
T KOG0309|consen 178 HGNDIFVWDL-----------------RKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKR 240 (1081)
T ss_pred cCCceEEEec-----------------cCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccce
Confidence 7888999997 355677888888888899999886 3456788899999999998765443344
Q ss_pred eeeecCCeeeEEEecC--CcEEEE-EeCCCeEEEEecC-CCcEEEEEEecccccCCCCCccCCCcccccceeeccccccC
Q 016982 243 VAFRDLPLRDVLFVSE--KMVIGV-GFDCNPMVFAADE-TGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGV 318 (379)
Q Consensus 243 ~~~~~~~i~~~~~s~~--~~~l~~-~~d~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (379)
......+|+.-.+.|- |.++.- -.+..+.++..++ ...|+..... ....
T Consensus 241 ~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~-----------------~pVh---------- 293 (1081)
T KOG0309|consen 241 TVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLN-----------------TPVH---------- 293 (1081)
T ss_pred eccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCC-----------------ccee----------
Confidence 4445778888888884 444442 2222333333322 2234332211 1112
Q ss_pred cccccccccccccccccceeeeeeeccc---C--CcccceEEEeecCceEEEEeCCC
Q 016982 319 GNDAVESSRTRGGTHVNCINCIVPLREA---G--SSRITRFTTSGLDGKIVTWDLES 370 (379)
Q Consensus 319 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~--~~~~~~l~t~~~Dg~v~iW~~~~ 370 (379)
.+.||.+.|....|-... + +.+.-.|+|-|.|..+|+|.+.+
T Consensus 294 ----------~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 294 ----------TFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ----------eecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 336999988877632211 1 12334899999999999999875
No 253
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.58 E-value=1.1e-13 Score=124.15 Aligned_cols=274 Identities=18% Similarity=0.164 Sum_probs=180.1
Q ss_pred cCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCc----eEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982 9 FAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEK----WEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE 84 (379)
Q Consensus 9 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~ 84 (379)
|-.++++.++-. .+|..|. .-.|.+||+..+. ......+..|...=.-. -.+.+++++..-+.+..=+..
T Consensus 6 ~~~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~---l~~~~~v~~~~~~~v~~~~~~ 79 (967)
T KOG0974|consen 6 SLGPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVK---LLSGKIVTCAKSDEVYVKEAS 79 (967)
T ss_pred ccccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhcccccccccccce---eccceEEEEEeecceeecchh
Confidence 345566666644 6776664 4589999998762 11222223341000000 112345555544434332222
Q ss_pred CCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCc-----CEEEEEEcCCCcEE
Q 016982 85 GSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDS-----SVTSVAWHPNNVFL 159 (379)
Q Consensus 85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~p~~~~l 159 (379)
... .. .....+....+..+...++.++.++.+-+||..... +...+ .+.. ...-+-++++.-++
T Consensus 80 ~~~-~~-----~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~---~~~~i--~~~er~~l~~~~~~g~s~~~~~i 148 (967)
T KOG0974|consen 80 NQI-IE-----RFSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSS---VLSKI--QSDERCTLYSSLIIGDSAEELYI 148 (967)
T ss_pred hhh-hh-----hccccccccchhhhcceEEEEEcCceEEEEecccCc---eehhc--CCCceEEEEeEEEEeccCcEEEE
Confidence 111 11 112334445556677888999999999999987765 22222 2222 12233456667789
Q ss_pred EEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCce
Q 016982 160 ATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPL 239 (379)
Q Consensus 160 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~ 239 (379)
++|+.-+.|.+|+.. ....++ .+.+|.+.+.++.|+-||+++++.|.|.++++|++.+.+..
T Consensus 149 ~~gsv~~~iivW~~~-----------------~dn~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~ 210 (967)
T KOG0974|consen 149 ASGSVFGEIIVWKPH-----------------EDNKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVL 210 (967)
T ss_pred EeccccccEEEEecc-----------------ccCCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeeccccccc
Confidence 999999999999862 122222 57899999999999999999999999999999999998876
Q ss_pred eeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCc
Q 016982 240 AQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVG 319 (379)
Q Consensus 240 ~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (379)
....-+|...++.++|.|+ +++.++.|.+.++|..+... |.. |
T Consensus 211 ~~~~fgHsaRvw~~~~~~n-~i~t~gedctcrvW~~~~~~-l~~--------------------------y--------- 253 (967)
T KOG0974|consen 211 GCTGFGHSARVWACCFLPN-RIITVGEDCTCRVWGVNGTQ-LEV--------------------------Y--------- 253 (967)
T ss_pred CcccccccceeEEEEeccc-eeEEeccceEEEEEecccce-ehh--------------------------h---------
Confidence 6566689999999999998 77778999999999544321 221 1
Q ss_pred cccccccccccccc-ccceeeeeeecccCCcccceEEEeecCceEEEEeCCC
Q 016982 320 NDAVESSRTRGGTH-VNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLES 370 (379)
Q Consensus 320 ~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~ 370 (379)
.+| ...|..++ .+++. ..++|++.||.+++|++..
T Consensus 254 -----------~~h~g~~iw~~~-~~~~~----~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 254 -----------DEHSGKGIWKIA-VPIGV----IIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred -----------hhhhhcceeEEE-EcCCc----eEEEeeccCcchhhhhhhc
Confidence 345 34688888 55554 7999999999999999875
No 254
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.57 E-value=3.1e-12 Score=108.27 Aligned_cols=193 Identities=11% Similarity=0.093 Sum_probs=150.8
Q ss_pred CCCCcEEEEEecCCeEEEEEecCCceEEEEEecc-CCCceEEEEEc------C--------------CCCEEEEEeCCCe
Q 016982 19 SPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQK-HDQIVSGIDWS------V--------------RSNRIVTVSHDRN 77 (379)
Q Consensus 19 s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~-~~~~v~~~~~~------~--------------~~~~l~~~~~d~~ 77 (379)
.|-..++|....||.+++|+...++......-.. -.+..++..|. | +-..|+-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 3456799999999999999999874222221111 12334444442 2 1236777888899
Q ss_pred EEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCc
Q 016982 78 SYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNV 157 (379)
Q Consensus 78 i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 157 (379)
|.+|++..++....+....|.+.|.++.++.+-..|.+++.|+.+..|+..... ..+.. ......+.+++.+||+.
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~---~~~~~-~~~~~~~~sl~is~D~~ 157 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV---IIRIW-KEQKPLVSSLCISPDGK 157 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce---eeeee-ccCCCccceEEEcCCCC
Confidence 999999999988888878899999999999999999999999999999998876 44444 66777889999999999
Q ss_pred EEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCC-----CCEEEEEc-CCCeEEEE
Q 016982 158 FLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPS-----GNTLAYVG-HNSMIYFV 231 (379)
Q Consensus 158 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-----~~~l~~~~-~d~~i~v~ 231 (379)
.+++++ +.|++||+ ++.+.+..|.+|.++|+++.|-.+ |.+++++. .+..+.+|
T Consensus 158 ~l~~as--~~ik~~~~------------------~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w 217 (541)
T KOG4547|consen 158 ILLTAS--RQIKVLDI------------------ETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVW 217 (541)
T ss_pred EEEecc--ceEEEEEc------------------cCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEE
Confidence 999886 67999998 789999999999999999999886 77776643 44556777
Q ss_pred ECCC
Q 016982 232 DDVG 235 (379)
Q Consensus 232 d~~~ 235 (379)
-+..
T Consensus 218 ~v~~ 221 (541)
T KOG4547|consen 218 VVEK 221 (541)
T ss_pred EEEc
Confidence 5443
No 255
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.55 E-value=3.6e-13 Score=120.89 Aligned_cols=198 Identities=16% Similarity=0.117 Sum_probs=154.0
Q ss_pred CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCc----eEEEEEcCCCCEEEEEeCCCeEEEEeccC
Q 016982 10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQI----VSGIDWSVRSNRIVTVSHDRNSYVWNQEG 85 (379)
Q Consensus 10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~d~~i~vw~~~~ 85 (379)
.+.|....+.-+.+.++.++.+..+.+||...+ .....++..... ..-+.++++.-++++|+.-+.|.+|+...
T Consensus 87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~--~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~ 164 (967)
T KOG0974|consen 87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNS--SVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHE 164 (967)
T ss_pred cccccccchhhhcceEEEEEcCceEEEEecccC--ceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccc
Confidence 344445555556678888888899999999876 344444432221 12234566777899999999999999884
Q ss_pred CceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCC
Q 016982 86 SEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTD 165 (379)
Q Consensus 86 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d 165 (379)
.+ ++. ...+|.+.+.++.|+.||.++++.++|.++++|++++.+.. .... .+|...+..+.|.|+ .+++++.|
T Consensus 165 dn-~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~--~~~~-fgHsaRvw~~~~~~n--~i~t~ged 237 (967)
T KOG0974|consen 165 DN-KPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVL--GCTG-FGHSARVWACCFLPN--RIITVGED 237 (967)
T ss_pred cC-Ccc-eecccCCceEEEEEccCCcEEEEEecCcceeeeeccccccc--Cccc-ccccceeEEEEeccc--eeEEeccc
Confidence 33 233 45789999999999999999999999999999999998742 1123 699999999999987 89999999
Q ss_pred CeEEEEeccccccccccccCCCccCCcccceEEEeecCC-cceEEEEECCCCCEEEEEcCCCeEEEEECCC
Q 016982 166 GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSF-SWAFGVKWSPSGNTLAYVGHNSMIYFVDDVG 235 (379)
Q Consensus 166 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~ 235 (379)
.++++|+. .+..+..+..|. ..++.++..++...+++++.|+.+++||+..
T Consensus 238 ctcrvW~~-------------------~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 238 CTCRVWGV-------------------NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred eEEEEEec-------------------ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 99999974 355555676664 4689999999999999999999999998754
No 256
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.54 E-value=7.4e-12 Score=106.00 Aligned_cols=190 Identities=12% Similarity=0.127 Sum_probs=146.9
Q ss_pred CCCCEEEEEeCCCeEEEEeccCCceeeeEEeecC-CCceeEEEEC------C--------------CCCEEEEEeCCCeE
Q 016982 64 VRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRL-NRAALCVQWS------P--------------KENKFAVGSGAKTV 122 (379)
Q Consensus 64 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~-~~~v~~~~~~------~--------------~~~~l~~~~~d~~v 122 (379)
|...++|....||.+++|+...++....+....+ .+...+..|. | +-..++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4457899999999999999998876555543322 2344444442 2 22357778889999
Q ss_pred EEEEeecCCceeEEEEEe-ecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEee
Q 016982 123 CICYYEQENNWWVSKLIR-KRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD 201 (379)
Q Consensus 123 ~i~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (379)
.+|+...++ +...+. ..|.+.|.++.++.+-..|.+++.|+.+..|+. .....+..+.
T Consensus 83 ~~ys~~~g~---it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~------------------~~~~~~~~~~ 141 (541)
T KOG4547|consen 83 LLYSVAGGE---ITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILE------------------KEKVIIRIWK 141 (541)
T ss_pred EEEEecCCe---EEEEEecCCCCCcceeeecccccCceEecCCceeEEEEec------------------ccceeeeeec
Confidence 999998887 444443 689999999999988899999999999999996 6667777777
Q ss_pred cCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecC-----CcEEEE--EeCCCeEEEE
Q 016982 202 LSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSE-----KMVIGV--GFDCNPMVFA 274 (379)
Q Consensus 202 ~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~-----~~~l~~--~~d~~~~i~~ 274 (379)
.....+.+++.+|||..|++++ ++|++||+.+.+ ++..+.+|.++|.+++|.-+ |.++.+ ..+..+.+|.
T Consensus 142 ~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~ke-vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~ 218 (541)
T KOG4547|consen 142 EQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKE-VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWV 218 (541)
T ss_pred cCCCccceEEEcCCCCEEEecc--ceEEEEEccCce-EEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEE
Confidence 7778899999999999999875 689999999876 66999999999999999876 666653 3455566665
Q ss_pred ecC
Q 016982 275 ADE 277 (379)
Q Consensus 275 ~~~ 277 (379)
.+.
T Consensus 219 v~~ 221 (541)
T KOG4547|consen 219 VEK 221 (541)
T ss_pred EEc
Confidence 543
No 257
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.54 E-value=8.6e-13 Score=104.35 Aligned_cols=246 Identities=15% Similarity=0.177 Sum_probs=162.8
Q ss_pred CcceeEEEeCCCCc--EEEEEecCCeEEEEEecCCceEE---------------------------------EEE-eccC
Q 016982 10 AQCITCHAWSPDHA--MVAFCPNNNEVHIYKLIQEKWEK---------------------------------LHV-LQKH 53 (379)
Q Consensus 10 ~~~i~~~~~s~~~~--~l~~~~~dg~i~i~~~~~~~~~~---------------------------------~~~-~~~~ 53 (379)
...|..+.|.++++ .++..+.|.+|++|.+.....+. .+. -.+|
T Consensus 84 eEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaH 163 (433)
T KOG1354|consen 84 EEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAH 163 (433)
T ss_pred hhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccc
Confidence 46789999988664 56667789999999986432111 011 1347
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCc-eeeeEEeecC-----CCceeEEEECCC-CCEEEEEeCCCeEEEEE
Q 016982 54 DQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSE-WVPTLVILRL-----NRAALCVQWSPK-ENKFAVGSGAKTVCICY 126 (379)
Q Consensus 54 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~-~~~~~~~~~~-----~~~v~~~~~~~~-~~~l~~~~~d~~v~i~~ 126 (379)
+--|+++.++.|.+.++++. |-.|.+|+++--. .-....+.++ ..-|++..|+|. -+.++..+..|+|++.|
T Consensus 164 tyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcD 242 (433)
T KOG1354|consen 164 TYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCD 242 (433)
T ss_pred eeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEee
Confidence 77899999999999888864 6789999987432 2222223333 246889999994 56888888899999999
Q ss_pred eecCCceeE-EEEE-----------eecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCccc
Q 016982 127 YEQENNWWV-SKLI-----------RKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFG 194 (379)
Q Consensus 127 ~~~~~~~~~-~~~~-----------~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~ 194 (379)
++....... .+.+ ...--..|.++.|+++|+++++-.. -+|++||+. ...
T Consensus 243 mR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~n-----------------me~ 304 (433)
T KOG1354|consen 243 MRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLN-----------------MEA 304 (433)
T ss_pred chhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEecc-----------------ccC
Confidence 985431000 1111 0222346889999999999997643 479999983 334
Q ss_pred ceEEEeecCC------------cc---eEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeee--------------
Q 016982 195 EQILQLDLSF------------SW---AFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAF-------------- 245 (379)
Q Consensus 195 ~~~~~~~~~~------------~~---v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-------------- 245 (379)
+++.+++.|. .. -..++|+-++.++++|+.....++|+...+......+..
T Consensus 305 ~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~ 384 (433)
T KOG1354|consen 305 KPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLR 384 (433)
T ss_pred CcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCcccccccce
Confidence 5555555442 11 246889999999999999999999985443211111110
Q ss_pred ------e-------------cCCeeeEEEecCCcEEEEEeCCCeEEEE
Q 016982 246 ------R-------------DLPLRDVLFVSEKMVIGVGFDCNPMVFA 274 (379)
Q Consensus 246 ------~-------------~~~i~~~~~s~~~~~l~~~~d~~~~i~~ 274 (379)
. ...+...+|+|....+|++..+.+++|.
T Consensus 385 ~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~ia~aatnnlyif~ 432 (433)
T KOG1354|consen 385 LVSSSGKRKRDEISVDALDFRKKILHTAWHPKENSIAVAATNNLYIFQ 432 (433)
T ss_pred eeecCCCccccccccchhhhhhHHHhhccCCccceeeeeecCceEEec
Confidence 0 0114456788888888877777777664
No 258
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.51 E-value=1.2e-12 Score=103.56 Aligned_cols=254 Identities=13% Similarity=0.177 Sum_probs=175.5
Q ss_pred eEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-ccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeE
Q 016982 44 WEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWN-QEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTV 122 (379)
Q Consensus 44 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v 122 (379)
...++.++||.+.+++...-|...-+++.+.|.++++|- .+.++.-+.+. .....+++++.++++...|++|-.+|++
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~-~~mP~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIY-HYMPSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhh-hhCCCCceEeeeeccceEEEEEEecceE
Confidence 356777889999999988888888899999999999995 34455444442 2346889999999999999999999999
Q ss_pred EEEEeecCCce-eEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEee
Q 016982 123 CICYYEQENNW-WVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD 201 (379)
Q Consensus 123 ~i~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (379)
.-+.+...-+. ...+.. ..|...+..+-|+-...++++.+.|..+. |... +.+..+....
T Consensus 93 tefs~sedfnkm~~~r~~-~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~-----------------e~~~~lg~Y~ 153 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDY-LAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCT-----------------ESGNRLGGYN 153 (404)
T ss_pred EEEEhhhhhhhcchhhhh-hhhhcceeeEEecCCceeEEEeccccceE-EEee-----------------ccCCcccceE
Confidence 87765432210 012333 68999999999998889999999887764 4431 2232221111
Q ss_pred cCCcceEEEEECCCCCEEEEEcCCCeEEEEECC-CCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCC
Q 016982 202 LSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDV-GPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETG 279 (379)
Q Consensus 202 ~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~ 279 (379)
. ...-+.+.+.-. +...|...|.|....+. +...++..+.+|..++.++.|.+..++|. +..|..+.+|+.....
T Consensus 154 ~-~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~ 230 (404)
T KOG1409|consen 154 F-ETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK 230 (404)
T ss_pred e-eccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCc
Confidence 0 000111111111 44555556665555432 33446788889999999999999776666 6678899999876543
Q ss_pred cEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeec
Q 016982 280 IWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGL 359 (379)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~ 359 (379)
.... .+.+|.+.|..+. +-+.- +.+.+++.
T Consensus 231 g~~~---------------------------------------------el~gh~~kV~~l~-~~~~t----~~l~S~~e 260 (404)
T KOG1409|consen 231 GTAY---------------------------------------------ELQGHNDKVQALS-YAQHT----RQLISCGE 260 (404)
T ss_pred ceee---------------------------------------------eeccchhhhhhhh-hhhhh----eeeeeccC
Confidence 2222 3358999999888 44333 79999999
Q ss_pred CceEEEEeCCC
Q 016982 360 DGKIVTWDLES 370 (379)
Q Consensus 360 Dg~v~iW~~~~ 370 (379)
||.|.+|+++.
T Consensus 261 dg~i~~w~mn~ 271 (404)
T KOG1409|consen 261 DGGIVVWNMNV 271 (404)
T ss_pred CCeEEEEeccc
Confidence 99999999975
No 259
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=6.3e-11 Score=99.87 Aligned_cols=285 Identities=15% Similarity=0.247 Sum_probs=178.2
Q ss_pred CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEe-----C-----CCeEE
Q 016982 10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVS-----H-----DRNSY 79 (379)
Q Consensus 10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~-----d~~i~ 79 (379)
..+.+..++|++|+++|.+. +..++|++..+.. .+.+... ..+.++.|+|-+++|.+-- . .-.+.
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~--~~lt~~~--~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~ 108 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLK--VVLCVEL--KKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVL 108 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCc--EEEEecc--ceeeeeeecccccccccccccccccCCCCCCCcee
Confidence 34567788999999999875 5799999998873 3322222 2678999999999987631 1 23588
Q ss_pred EEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCC--c
Q 016982 80 VWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNN--V 157 (379)
Q Consensus 80 vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~ 157 (379)
+|+++++.....+.. .... -++..|++|..+.+--. .+.+++|+...... ... .-|...+..+.++|.+ .
T Consensus 109 v~~vet~~~~s~~q~-k~Q~-~W~~qfs~dEsl~arlv-~nev~f~~~~~f~~--~~~---kl~~~~i~~f~lSpgp~~~ 180 (566)
T KOG2315|consen 109 VYNVETGVQRSQIQK-KMQN-GWVPQFSIDESLAARLV-SNEVQFYDLGSFKT--IQH---KLSVSGITMLSLSPGPEPP 180 (566)
T ss_pred eeeeccceehhheeh-hhhc-Ccccccccchhhhhhhh-cceEEEEecCCccc--eee---eeeccceeeEEecCCCCCc
Confidence 999999643333322 2222 26889999876544332 46799998877442 222 3467789999999974 4
Q ss_pred EEEE-----eeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEE-EEEc--C-----
Q 016982 158 FLAT-----TSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTL-AYVG--H----- 224 (379)
Q Consensus 158 ~l~~-----~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~~~--~----- 224 (379)
.+++ .+.-+.++||..... .....+..-......-..+.|++-|.-| +.++ -
T Consensus 181 ~vAvyvPe~kGaPa~vri~~~~~~---------------~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~ 245 (566)
T KOG2315|consen 181 FVAVYVPEKKGAPASVRIYKYPEE---------------GQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNA 245 (566)
T ss_pred eEEEEccCCCCCCcEEEEeccccc---------------cccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCc
Confidence 4443 455678999975100 0001111111112223467888866532 2222 1
Q ss_pred ----CCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEE---eCCCeEEEEecCCCcEEEEEEecccccCCCCC
Q 016982 225 ----NSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVG---FDCNPMVFAADETGIWTFIKFLDERKTSSSGP 297 (379)
Q Consensus 225 ----d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~---~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (379)
..+++++++.+.. ..-.+. ..+||.++.|+|+|+-+++. .-..+.+|+.+..-..++
T Consensus 246 SYYGEq~Lyll~t~g~s-~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df-------------- 309 (566)
T KOG2315|consen 246 SYYGEQTLYLLATQGES-VSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDF-------------- 309 (566)
T ss_pred cccccceEEEEEecCce-EEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeC--------------
Confidence 3478888887433 222222 37899999999999765533 344677777655322221
Q ss_pred ccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecC---ceEEEEeCCCcccc
Q 016982 298 KYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLD---GKIVTWDLESQEDL 374 (379)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~D---g~v~iW~~~~~~~~ 374 (379)
-.++=+++. |++.| ++|+-+|-+ |.|-|||+.+.+++
T Consensus 310 -----------------------------------~egpRN~~~-fnp~g----~ii~lAGFGNL~G~mEvwDv~n~K~i 349 (566)
T KOG2315|consen 310 -----------------------------------PEGPRNTAF-FNPHG----NIILLAGFGNLPGDMEVWDVPNRKLI 349 (566)
T ss_pred -----------------------------------CCCCccceE-ECCCC----CEEEEeecCCCCCceEEEeccchhhc
Confidence 223334555 88776 888888754 89999999998777
Q ss_pred ccCC
Q 016982 375 LNYH 378 (379)
Q Consensus 375 ~~~~ 378 (379)
.++.
T Consensus 350 ~~~~ 353 (566)
T KOG2315|consen 350 AKFK 353 (566)
T ss_pred cccc
Confidence 6654
No 260
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.50 E-value=1.6e-12 Score=101.63 Aligned_cols=264 Identities=13% Similarity=0.134 Sum_probs=168.1
Q ss_pred CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCc---eEEEEEeccCCC------------ceEEEEEcCCC--CEEEEE
Q 016982 10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEK---WEKLHVLQKHDQ------------IVSGIDWSVRS--NRIVTV 72 (379)
Q Consensus 10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~---~~~~~~~~~~~~------------~v~~~~~~~~~--~~l~~~ 72 (379)
.+.|+++.|...|.||++|...|.|.+|.-.... .+....+++|.. .|..+.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4689999999999999999888999999876542 334445666653 47788887654 456666
Q ss_pred eCCCeEEEEeccCCcee-----------------------------------------eeEEeecCCCceeEEEECCCCC
Q 016982 73 SHDRNSYVWNQEGSEWV-----------------------------------------PTLVILRLNRAALCVQWSPKEN 111 (379)
Q Consensus 73 ~~d~~i~vw~~~~~~~~-----------------------------------------~~~~~~~~~~~v~~~~~~~~~~ 111 (379)
+.|++|++|.+...... +.+....|.--+.+++|+.|..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 78999999987433100 0011134556678899998877
Q ss_pred EEEEEeCCCeEEEEEeecCCceeEEEEEeecC-----CcCEEEEEEcCCC-cEEEEeeCCCeEEEEeccccccccccccC
Q 016982 112 KFAVGSGAKTVCICYYEQENNWWVSKLIRKRH-----DSSVTSVAWHPNN-VFLATTSTDGKCRVFSTFIKGVDIKEKKE 185 (379)
Q Consensus 112 ~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~p~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 185 (379)
.++++. |-.|.+|+++......-..-+ .+| ...|++..|+|.. +.+...+..|.|++-|++....=.....
T Consensus 186 t~lSaD-dLrINLWnl~i~D~sFnIVDi-KP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k- 262 (460)
T COG5170 186 TLLSAD-DLRINLWNLEIIDGSFNIVDI-KPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK- 262 (460)
T ss_pred eeeecc-ceeeeeccccccCCceEEEec-cCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh-
Confidence 776654 678999998765531111112 233 2467889999965 6777788899999998731110000000
Q ss_pred CCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeec------------CCe---
Q 016982 186 GTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRD------------LPL--- 250 (379)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~------------~~i--- 250 (379)
.......+-...-+..-...|..+.|+++|+++++-+ --++++||.+..+.++.++..|. ..|
T Consensus 263 -lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdk 340 (460)
T COG5170 263 -LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDK 340 (460)
T ss_pred -hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechHHHHHHHHHhhhhccceeee
Confidence 0000000001111222235688999999999998643 46899999998877777775442 122
Q ss_pred eeEEEecCCcEEE-EEeCCCeEEEEecCC
Q 016982 251 RDVLFVSEKMVIG-VGFDCNPMVFAADET 278 (379)
Q Consensus 251 ~~~~~s~~~~~l~-~~~d~~~~i~~~~~~ 278 (379)
..+.||.|.+.+. +++.+..-++..+..
T Consensus 341 FeisfSgd~~~v~sgsy~NNfgiyp~~ss 369 (460)
T COG5170 341 FEISFSGDDKHVLSGSYSNNFGIYPTDSS 369 (460)
T ss_pred EEEEecCCcccccccccccceeeeccccC
Confidence 3478887766554 666777777765443
No 261
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.49 E-value=1.5e-09 Score=90.52 Aligned_cols=265 Identities=11% Similarity=0.010 Sum_probs=151.4
Q ss_pred CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeC----------CCeEEEEeccCCceeeeEEeecC----
Q 016982 32 NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSH----------DRNSYVWNQEGSEWVPTLVILRL---- 97 (379)
Q Consensus 32 g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------d~~i~vw~~~~~~~~~~~~~~~~---- 97 (379)
+.|.+.|..+. +.+..+..-..+- .+ ++||++.|+.+.. +..|.+||..+.+.+..+.+...
T Consensus 27 ~~v~ViD~~~~--~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~ 102 (352)
T TIGR02658 27 TQVYTIDGEAG--RVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL 102 (352)
T ss_pred ceEEEEECCCC--EEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh
Confidence 79999999987 6666666543332 34 9999998877654 67899999999987776654221
Q ss_pred -CCceeEEEECCCCCEEEEEeC--CCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEecc
Q 016982 98 -NRAALCVQWSPKENKFAVGSG--AKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTF 174 (379)
Q Consensus 98 -~~~v~~~~~~~~~~~l~~~~~--d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~ 174 (379)
......++++|||+++++... +..|.+.|+.+++ ....+.. .+...-...+++..+ +-+.||......+.
T Consensus 103 ~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~k---vv~ei~v--p~~~~vy~t~e~~~~--~~~~Dg~~~~v~~d 175 (352)
T TIGR02658 103 VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKA---FVRMMDV--PDCYHIFPTANDTFF--MHCRDGSLAKVGYG 175 (352)
T ss_pred ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCc---EEEEEeC--CCCcEEEEecCCccE--EEeecCceEEEEec
Confidence 123347899999999998763 6889999999887 4444411 111111222222211 11234443333221
Q ss_pred ccccccccccCCCccCCcccceE-EE---eecCCcce-EEEEECC-CCCEEEEEcCCCeEEEEECCCCCc----eeeeee
Q 016982 175 IKGVDIKEKKEGTSSDTKFGEQI-LQ---LDLSFSWA-FGVKWSP-SGNTLAYVGHNSMIYFVDDVGPSP----LAQNVA 244 (379)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~v-~~~~~sp-~~~~l~~~~~d~~i~v~d~~~~~~----~~~~~~ 244 (379)
..++.. .. +.....++ ....|.+ +|+++....+ |.|.+.|+..... ....+.
T Consensus 176 -----------------~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~ 237 (352)
T TIGR02658 176 -----------------TKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFT 237 (352)
T ss_pred -----------------CCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeecc
Confidence 111100 00 11100000 1114455 8888877655 9999999654321 111111
Q ss_pred e-------ecCCeeeEEEecCCcEEEEEeC-----------CCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccc
Q 016982 245 F-------RDLPLRDVLFVSEKMVIGVGFD-----------CNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEA 306 (379)
Q Consensus 245 ~-------~~~~i~~~~~s~~~~~l~~~~d-----------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (379)
. ......-++++++++.+..... +.+.+++... ++....+
T Consensus 238 ~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t---~kvi~~i------------------- 295 (352)
T TIGR02658 238 EAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT---GKRLRKI------------------- 295 (352)
T ss_pred ccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC---CeEEEEE-------------------
Confidence 1 1222344899998876664321 1233333222 1222211
Q ss_pred cceeeccccccCcccccccccccccccccceeeeeeecccCCcccc-eEE-EeecCceEEEEeCCCccccccC
Q 016982 307 FGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRIT-RFT-TSGLDGKIVTWDLESQEDLLNY 377 (379)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~-~l~-t~~~Dg~v~iW~~~~~~~~~~~ 377 (379)
..| ..+..++ +++|+ + +|+ +...++.|.+.|..+++.++.+
T Consensus 296 -----------------------~vG--~~~~~ia-vS~Dg----kp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 296 -----------------------ELG--HEIDSIN-VSQDA----KPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred -----------------------eCC--CceeeEE-ECCCC----CeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 123 3677888 88877 4 555 5557899999999999888765
No 262
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.49 E-value=5.8e-13 Score=125.74 Aligned_cols=200 Identities=12% Similarity=0.146 Sum_probs=154.5
Q ss_pred eeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEec-cCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982 6 VHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQ-KHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE 84 (379)
Q Consensus 6 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~ 84 (379)
+.++-..|.++.=+|...+.++|+.||.|++|....+ ..+..++ .....|+.+.|+.+|+.+..+..||.+.+|.+.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~--~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHG--QQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCC--CeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC
Confidence 3455678888888999899999999999999998876 3333332 223789999999999999999999999999987
Q ss_pred CCceeeeEEeecCCCceeEEEECCCCCEEEEEe---CCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEE
Q 016982 85 GSEWVPTLVILRLNRAALCVQWSPKENKFAVGS---GAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLAT 161 (379)
Q Consensus 85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~ 161 (379)
.. +.+....|.....++.|-. ..+++++ .++.+.+||........+.. ..|.+.++++++.|..+.|++
T Consensus 2282 pk---~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~---~~H~~gaT~l~~~P~~qllis 2353 (2439)
T KOG1064|consen 2282 PK---PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH---TCHDGGATVLAYAPKHQLLIS 2353 (2439)
T ss_pred Cc---ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee---eecCCCceEEEEcCcceEEEe
Confidence 32 4455567888888888874 5666654 37889999976655322332 679999999999999999999
Q ss_pred eeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceee
Q 016982 162 TSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQ 241 (379)
Q Consensus 162 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~ 241 (379)
|+.+|.|++||+ +..+.++.++. ++ ...++++++..|.++||++.... ++.
T Consensus 2354 ggr~G~v~l~D~------------------rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~-ll~ 2404 (2439)
T KOG1064|consen 2354 GGRKGEVCLFDI------------------RQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFG-LLH 2404 (2439)
T ss_pred cCCcCcEEEeeh------------------HHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccc-hhh
Confidence 999999999997 44455544433 44 56789999999999999988763 334
Q ss_pred eee
Q 016982 242 NVA 244 (379)
Q Consensus 242 ~~~ 244 (379)
.+.
T Consensus 2405 ~~p 2407 (2439)
T KOG1064|consen 2405 TFP 2407 (2439)
T ss_pred cCc
Confidence 443
No 263
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.48 E-value=1.5e-11 Score=95.32 Aligned_cols=238 Identities=14% Similarity=0.084 Sum_probs=158.4
Q ss_pred cceeEEEeCC---CCc-EEEEEecCCeEEEEEecCCceEEEEEeccCC------CceEEEEEcCCCCEEEEEeCCCeEEE
Q 016982 11 QCITCHAWSP---DHA-MVAFCPNNNEVHIYKLIQEKWEKLHVLQKHD------QIVSGIDWSVRSNRIVTVSHDRNSYV 80 (379)
Q Consensus 11 ~~i~~~~~s~---~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~d~~i~v 80 (379)
+.+..+.|.. +|. .++-+-..|.|.+|..... +....|.+-. ....++.|++.+..++++..+|.+.+
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~--~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~ 147 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDED--ESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISG 147 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccc--eeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEE
Confidence 4455666653 444 4566667899999987654 3333333221 13457889999999999999999986
Q ss_pred EeccCCceeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcC-CCcE
Q 016982 81 WNQEGSEWVPTLVILRLNRAALCVQWSP-KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHP-NNVF 158 (379)
Q Consensus 81 w~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~ 158 (379)
-+..............|.-+++...|+. +.+.+.+|+.|+.+..||++....+ +.... ..|...|.++.-+| .+.+
T Consensus 148 v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~-i~~n~-kvH~~GV~SI~ss~~~~~~ 225 (339)
T KOG0280|consen 148 VYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTF-IWHNS-KVHTSGVVSIYSSPPKPTY 225 (339)
T ss_pred EecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcce-eeecc-eeeecceEEEecCCCCCce
Confidence 6665555444444577888999999986 5578999999999999999955432 22222 56888899998876 4689
Q ss_pred EEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCC--CCEEEEEcCCCeEEEEECCCC
Q 016982 159 LATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPS--GNTLAYVGHNSMIYFVDDVGP 236 (379)
Q Consensus 159 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~i~v~d~~~~ 236 (379)
+++|++|-.|++||.+ .-++++..-.. .+.|+.+.++|. +..|+++- -.-.+|.+....
T Consensus 226 I~TGsYDe~i~~~DtR-----------------nm~kPl~~~~v-~GGVWRi~~~p~~~~~lL~~CM-h~G~ki~~~~~~ 286 (339)
T KOG0280|consen 226 IATGSYDECIRVLDTR-----------------NMGKPLFKAKV-GGGVWRIKHHPEIFHRLLAACM-HNGAKILDSSDK 286 (339)
T ss_pred EEEeccccceeeeehh-----------------cccCccccCcc-ccceEEEEecchhhhHHHHHHH-hcCceEEEeccc
Confidence 9999999999999972 34555544332 477999999994 33444443 344677766554
Q ss_pred Cce----eeeeeeecCCeeeEEEecCCcEEEE--EeCCCeE
Q 016982 237 SPL----AQNVAFRDLPLRDVLFVSEKMVIGV--GFDCNPM 271 (379)
Q Consensus 237 ~~~----~~~~~~~~~~i~~~~~s~~~~~l~~--~~d~~~~ 271 (379)
... ....+.|.+-...-.|.....++++ .+|+.++
T Consensus 287 ~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~ 327 (339)
T KOG0280|consen 287 VLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIR 327 (339)
T ss_pred ccchheeeeccccccceeeccccccccceeeeeecccccee
Confidence 322 2333445555666666444456775 3565544
No 264
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.47 E-value=1e-10 Score=96.77 Aligned_cols=215 Identities=13% Similarity=0.136 Sum_probs=154.2
Q ss_pred eCCCCcEEEEEecCCeEEEEEecCCceEEEEEe-ccC---C-----CceEEEE-EcC-CCCEEEEEeCCCeEEEEeccCC
Q 016982 18 WSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVL-QKH---D-----QIVSGID-WSV-RSNRIVTVSHDRNSYVWNQEGS 86 (379)
Q Consensus 18 ~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~-~~~---~-----~~v~~~~-~~~-~~~~l~~~~~d~~i~vw~~~~~ 86 (379)
.+.||+.++.. ..|.|++||.++.+.+.+..- +-. . .+..-+. |++ +|++++..|. |+..+.+...+
T Consensus 274 ~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~ 351 (668)
T COG4946 274 ANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDG 351 (668)
T ss_pred cCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCC
Confidence 35678888775 458999999988754443321 111 0 1111122 333 5788888886 67778776666
Q ss_pred ceeeeEEeecCCCceeEEEECCCCCEEEEEeCCC-eEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCC
Q 016982 87 EWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK-TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTD 165 (379)
Q Consensus 87 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d 165 (379)
- .+. .++.+.|.-..+.-+++-++.|..|| .+-++|.++++ .+.+ ...-+.|.++..+|+|++++.+...
T Consensus 352 ~---~iq-v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e----~kr~-e~~lg~I~av~vs~dGK~~vvaNdr 422 (668)
T COG4946 352 Y---SIQ-VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE----VKRI-EKDLGNIEAVKVSPDGKKVVVANDR 422 (668)
T ss_pred e---eEE-cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce----EEEe-eCCccceEEEEEcCCCcEEEEEcCc
Confidence 4 232 35677898888888888999999998 89999999886 4555 5677899999999999999999988
Q ss_pred CeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCC----CeEEEEECCCCCceee
Q 016982 166 GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHN----SMIYFVDDVGPSPLAQ 241 (379)
Q Consensus 166 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d----~~i~v~d~~~~~~~~~ 241 (379)
..+.+.|+ .++.....-+...+-|+.++|+|+++++|.+--+ ..|+++|+.+++. .
T Consensus 423 ~el~vidi------------------dngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki--y 482 (668)
T COG4946 423 FELWVIDI------------------DNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI--Y 482 (668)
T ss_pred eEEEEEEe------------------cCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE--E
Confidence 88999987 4444433333445679999999999999987655 4799999988763 2
Q ss_pred eeeeecCCeeeEEEecCCcEEE
Q 016982 242 NVAFRDLPLRDVLFVSEKMVIG 263 (379)
Q Consensus 242 ~~~~~~~~i~~~~~s~~~~~l~ 263 (379)
.+.....--.+.+|.||+++|.
T Consensus 483 ~vTT~ta~DfsPaFD~d~ryLY 504 (668)
T COG4946 483 DVTTPTAYDFSPAFDPDGRYLY 504 (668)
T ss_pred EecCCcccccCcccCCCCcEEE
Confidence 3333344456788999999776
No 265
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.44 E-value=1.4e-10 Score=89.06 Aligned_cols=237 Identities=12% Similarity=0.050 Sum_probs=150.3
Q ss_pred eEEEeCC-----CCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcC-CCCEEEEEeCCCeEEEEeccCCc
Q 016982 14 TCHAWSP-----DHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSV-RSNRIVTVSHDRNSYVWNQEGSE 87 (379)
Q Consensus 14 ~~~~~s~-----~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~ 87 (379)
+.+.|.| ...+||.|+..|...+|...+++ ...+....|...|+-+.=.- ..-.+..++.|.++++.+++.+.
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~-~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s 149 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTND-GHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDS 149 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcc-cceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCc
Confidence 3455655 33579999999999999998763 22333333443332221111 12346667889999999888765
Q ss_pred eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCe
Q 016982 88 WVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGK 167 (379)
Q Consensus 88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~ 167 (379)
...... ...-.+.+++++++++++++.+....|..|.++..... ..+.......+.=.+..|+.....+|++..||+
T Consensus 150 ~~~~~h--~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey-~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~ 226 (344)
T KOG4532|consen 150 NKFAVH--NQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEY-IENIYEAPTSDHGFYNSFSENDLQFAVVFQDGT 226 (344)
T ss_pred ccceee--ccccceeeeEEcCCCceEEEecCCCcceEEEeCCccce-eeeeEecccCCCceeeeeccCcceEEEEecCCc
Confidence 333321 11233789999999999999999999999988766532 222221444455578899999999999999999
Q ss_pred EEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCC--EEEEEcCCCeEEEEECCCCCceeeeeee
Q 016982 168 CRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGN--TLAYVGHNSMIYFVDDVGPSPLAQNVAF 245 (379)
Q Consensus 168 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 245 (379)
+.|||++. ... .......+-..|.+.+..+.|+|-|. +|+..-.-+.+.+.|+++.......+..
T Consensus 227 ~~I~DVR~-------~~t------pm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~ 293 (344)
T KOG4532|consen 227 CAIYDVRN-------MAT------PMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIP 293 (344)
T ss_pred EEEEEecc-------ccc------chhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecC
Confidence 99999731 111 01111222345889999999998654 4555556688999999987654222211
Q ss_pred ------ec-CCeeeEEEecCCcEEEEEeC
Q 016982 246 ------RD-LPLRDVLFVSEKMVIGVGFD 267 (379)
Q Consensus 246 ------~~-~~i~~~~~s~~~~~l~~~~d 267 (379)
|. ..|..-.|+.++.-+.....
T Consensus 294 ~d~~~~~~tq~ifgt~f~~~n~s~~v~~e 322 (344)
T KOG4532|consen 294 DDVERKHNTQHIFGTNFNNENESNDVKNE 322 (344)
T ss_pred ccccccccccccccccccCCCcccccccc
Confidence 11 22555666665554443333
No 266
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.44 E-value=1.4e-09 Score=102.91 Aligned_cols=253 Identities=16% Similarity=0.268 Sum_probs=161.4
Q ss_pred cceeEEEeCCCCcEE--EEEecCC--eEEEEEecCC-ceEEEEEec-----cCCCceEEEEEcCCCCEEEEEeCCCeEEE
Q 016982 11 QCITCHAWSPDHAMV--AFCPNNN--EVHIYKLIQE-KWEKLHVLQ-----KHDQIVSGIDWSVRSNRIVTVSHDRNSYV 80 (379)
Q Consensus 11 ~~i~~~~~s~~~~~l--~~~~~dg--~i~i~~~~~~-~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~v 80 (379)
..+...+|.+..+.+ +++.... .|.+-..... ..+.+..+. ...+.|.++.+.++...++.+..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 357777887765444 3332222 2334333322 123444443 23468999999999999999999999999
Q ss_pred E----eccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeec-------------CC------ceeEE-
Q 016982 81 W----NQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQ-------------EN------NWWVS- 136 (379)
Q Consensus 81 w----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~-------------~~------~~~~~- 136 (379)
. +......... ..-...|.+++||||+..++..+.++++.+.+-+- +. .|...
T Consensus 102 ~~~~~~~~~~~~E~V---G~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKe 178 (928)
T PF04762_consen 102 VREDPDPDEDEIEIV---GSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKE 178 (928)
T ss_pred EEccCCCCCceeEEE---EEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCccc
Confidence 9 5555542222 23468999999999999999999988887743211 00 00000
Q ss_pred --------EE----Eee-----------cCCcCEEEEEEcCCCcEEEEeeC---C---CeEEEEeccccccccccccCCC
Q 016982 137 --------KL----IRK-----------RHDSSVTSVAWHPNNVFLATTST---D---GKCRVFSTFIKGVDIKEKKEGT 187 (379)
Q Consensus 137 --------~~----~~~-----------~~~~~v~~~~~~p~~~~l~~~~~---d---~~i~v~d~~~~~~~~~~~~~~~ 187 (379)
+. +.. .+...-..++|-.||.++|+.+. . ..++||+
T Consensus 179 TQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~--------------- 243 (928)
T PF04762_consen 179 TQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYS--------------- 243 (928)
T ss_pred CccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEEC---------------
Confidence 00 000 02334567899999999998774 2 5789997
Q ss_pred ccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcC---CCeEEEEECCCCCceeeeee--eecCCeeeEEEecCCcEE
Q 016982 188 SSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGH---NSMIYFVDDVGPSPLAQNVA--FRDLPLRDVLFVSEKMVI 262 (379)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l 262 (379)
+.+....+-+.-.+--..++|.|.|+++|+... ...|.+|.-+.-+.-...+. .....|..+.|++|+.+|
T Consensus 244 ----ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iL 319 (928)
T PF04762_consen 244 ----REGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEIL 319 (928)
T ss_pred ----CCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEE
Confidence 445544444333344457899999999998753 45688887443322112222 235678999999999999
Q ss_pred EEEeCCCeEEEEecCCCcEEEEEE
Q 016982 263 GVGFDCNPMVFAADETGIWTFIKF 286 (379)
Q Consensus 263 ~~~~d~~~~i~~~~~~~~~~~~~~ 286 (379)
|.-..+.+.+|...+-. |-+-..
T Consensus 320 Av~~~~~vqLWt~~NYH-WYLKqe 342 (928)
T PF04762_consen 320 AVWLEDRVQLWTRSNYH-WYLKQE 342 (928)
T ss_pred EEEecCCceEEEeeCCE-EEEEEE
Confidence 97777779999877643 655443
No 267
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=1e-10 Score=98.63 Aligned_cols=232 Identities=14% Similarity=0.136 Sum_probs=152.6
Q ss_pred eEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCC--CEEEE-----EeCCCeEEEEeccCC
Q 016982 14 TCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRS--NRIVT-----VSHDRNSYVWNQEGS 86 (379)
Q Consensus 14 ~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~-----~~~d~~i~vw~~~~~ 86 (379)
++..|++|..+.|-- ..+.+++|+..+-+ ...+.+ |...|+.+.+||.+ ..+|+ .+.-..|++|.....
T Consensus 129 W~~qfs~dEsl~arl-v~nev~f~~~~~f~-~~~~kl--~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~ 204 (566)
T KOG2315|consen 129 WVPQFSIDESLAARL-VSNEVQFYDLGSFK-TIQHKL--SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEE 204 (566)
T ss_pred cccccccchhhhhhh-hcceEEEEecCCcc-ceeeee--eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccc
Confidence 578888887755433 24689999987642 233333 56789999999974 34444 234467999987632
Q ss_pred ceeeeEEeec-CCCceeEEEECCCCCEEE-EEe--CC---------CeEEEEEeecCCceeEEEEEeecCCcCEEEEEEc
Q 016982 87 EWVPTLVILR-LNRAALCVQWSPKENKFA-VGS--GA---------KTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWH 153 (379)
Q Consensus 87 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~-~~~--~d---------~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 153 (379)
.......... ....=..+.|++-|+-|+ .++ .| .++++.+++... ..-. ....++|.++.|+
T Consensus 205 ~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s---~~V~--L~k~GPVhdv~W~ 279 (566)
T KOG2315|consen 205 GQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES---VSVP--LLKEGPVHDVTWS 279 (566)
T ss_pred cccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce---EEEe--cCCCCCceEEEEC
Confidence 2111111000 123335678888766332 222 23 357776666322 2222 3567999999999
Q ss_pred CCCcEEEE--eeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcC---CCeE
Q 016982 154 PNNVFLAT--TSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGH---NSMI 228 (379)
Q Consensus 154 p~~~~l~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---d~~i 228 (379)
|+++.+++ |-.-..+.|||+ .+.++..+ ..++-+++-|+|.|++++.++- -|.|
T Consensus 280 ~s~~EF~VvyGfMPAkvtifnl-------------------r~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~m 338 (566)
T KOG2315|consen 280 PSGREFAVVYGFMPAKVTIFNL-------------------RGKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDM 338 (566)
T ss_pred CCCCEEEEEEecccceEEEEcC-------------------CCCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCce
Confidence 99987765 446788999985 35555555 3566789999999999998874 4899
Q ss_pred EEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEE-------eCCCeEEEEecCC
Q 016982 229 YFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVG-------FDCNPMVFAADET 278 (379)
Q Consensus 229 ~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-------~d~~~~i~~~~~~ 278 (379)
-|||+.+.+ ++..+... .-+-+.|+|||+++.++ -|+.++||.+.+.
T Consensus 339 EvwDv~n~K-~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 339 EVWDVPNRK-LIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred EEEeccchh-hccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 999998854 44555433 34568999999988743 2788999998764
No 268
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=1.4e-09 Score=94.58 Aligned_cols=212 Identities=8% Similarity=-0.008 Sum_probs=125.9
Q ss_pred CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCE-EEEEeC---CCeEEEEeccCCceeeeEEeecCCCceeEEEEC
Q 016982 32 NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNR-IVTVSH---DRNSYVWNQEGSEWVPTLVILRLNRAALCVQWS 107 (379)
Q Consensus 32 g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~---d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~ 107 (379)
..|.+-|.+.. ....... .. .+....|+|||+. ++..+. +..|.++|+.+++..... ...+......|+
T Consensus 169 ~~l~~~d~dg~--~~~~~~~-~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt---~~~g~~~~~~~S 241 (419)
T PRK04043 169 SNIVLADYTLT--YQKVIVK-GG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA---SSQGMLVVSDVS 241 (419)
T ss_pred ceEEEECCCCC--ceeEEcc-CC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe---cCCCcEEeeEEC
Confidence 35666555544 2222222 23 7788999999985 654443 356999999888743332 245556678899
Q ss_pred CCCCEEEEEeC-C--CeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC-CC--eEEEEeccccccccc
Q 016982 108 PKENKFAVGSG-A--KTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST-DG--KCRVFSTFIKGVDIK 181 (379)
Q Consensus 108 ~~~~~l~~~~~-d--~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d~--~i~v~d~~~~~~~~~ 181 (379)
|||+.++.... + ..|.++++..+. .+.+ ..+........|+|||+.|+..+. .+ .|.++|+
T Consensus 242 PDG~~la~~~~~~g~~~Iy~~dl~~g~----~~~L-T~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl-------- 308 (419)
T PRK04043 242 KDGSKLLLTMAPKGQPDIYLYDTNTKT----LTQI-TNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKL-------- 308 (419)
T ss_pred CCCCEEEEEEccCCCcEEEEEECCCCc----EEEc-ccCCCccCccEECCCCCEEEEEECCCCCceEEEEEC--------
Confidence 99987765433 3 456666766654 2333 333333445689999987777664 34 4555554
Q ss_pred cccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCC---------CeEEEEECCCCCceeeeeeeecCCeee
Q 016982 182 EKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHN---------SMIYFVDDVGPSPLAQNVAFRDLPLRD 252 (379)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---------~~i~v~d~~~~~~~~~~~~~~~~~i~~ 252 (379)
..++. ..+..... ....|+|+|++|+..+.. ..|.+.|+.++.. +.+... .....
T Consensus 309 ----------~~g~~-~rlt~~g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~--~~LT~~-~~~~~ 372 (419)
T PRK04043 309 ----------NSGSV-EQVVFHGK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI--RRLTAN-GVNQF 372 (419)
T ss_pred ----------CCCCe-EeCccCCC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe--EECCCC-CCcCC
Confidence 22322 12211111 124899999998876543 3688889877653 334332 23346
Q ss_pred EEEecCCcEEE-EE-eCCCeEEEEecCCC
Q 016982 253 VLFVSEKMVIG-VG-FDCNPMVFAADETG 279 (379)
Q Consensus 253 ~~~s~~~~~l~-~~-~d~~~~i~~~~~~~ 279 (379)
..|+|||+.|+ +. ..+.-.++..+-.+
T Consensus 373 p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 373 PRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred eEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 89999999877 33 23343454444333
No 269
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=3.2e-10 Score=98.55 Aligned_cols=209 Identities=9% Similarity=0.104 Sum_probs=126.8
Q ss_pred cceeEEEeCCCCcE-EEEEec---CCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEE-eCC--CeEEEEec
Q 016982 11 QCITCHAWSPDHAM-VAFCPN---NNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTV-SHD--RNSYVWNQ 83 (379)
Q Consensus 11 ~~i~~~~~s~~~~~-l~~~~~---dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d--~~i~vw~~ 83 (379)
..+....|+|||+. ++..+. +..|+++|+.+++.+.+.. ..+......|+|||+.|+.. +.+ ..|.++|+
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~---~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl 264 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS---SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDT 264 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec---CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEEC
Confidence 36778999999985 665443 3579999998874444433 34455678899999877543 333 46888888
Q ss_pred cCCceeeeEEeecCCCceeEEEECCCCCEEEEEeC-CC--eEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEE
Q 016982 84 EGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSG-AK--TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLA 160 (379)
Q Consensus 84 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 160 (379)
.+++..+. ..+........|+|||+.|+..+. .+ .|.+.|+..+. ..+.. .. .. ....|+|+|++|+
T Consensus 265 ~~g~~~~L---T~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~---~~rlt-~~-g~--~~~~~SPDG~~Ia 334 (419)
T PRK04043 265 NTKTLTQI---TNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS---VEQVV-FH-GK--NNSSVSTYKNYIV 334 (419)
T ss_pred CCCcEEEc---ccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC---eEeCc-cC-CC--cCceECCCCCEEE
Confidence 88764332 223333445689999998887764 33 46666666655 22332 11 11 1248999999888
Q ss_pred EeeCC---------CeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCC---CeE
Q 016982 161 TTSTD---------GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHN---SMI 228 (379)
Q Consensus 161 ~~~~d---------~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~~i 228 (379)
..... ..|.+.|+ ..+. ...+... .......|+|||+.++..+.+ ..+
T Consensus 335 ~~~~~~~~~~~~~~~~I~v~d~------------------~~g~-~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L 394 (419)
T PRK04043 335 YSSRETNNEFGKNTFNLYLIST------------------NSDY-IRRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSAL 394 (419)
T ss_pred EEEcCCCcccCCCCcEEEEEEC------------------CCCC-eEECCCC-CCcCCeEECCCCCEEEEEEccCCcEEE
Confidence 76653 25666665 2222 2333322 223358999999988776533 246
Q ss_pred EEEECCCCCceeeeeeeecCCeeeEE
Q 016982 229 YFVDDVGPSPLAQNVAFRDLPLRDVL 254 (379)
Q Consensus 229 ~v~d~~~~~~~~~~~~~~~~~i~~~~ 254 (379)
.++++....+ ..+....+.+...+
T Consensus 395 ~~~~l~g~~~--~~l~~~~g~~~~p~ 418 (419)
T PRK04043 395 GIIRLNYNKS--FLFPLKVGKIQSID 418 (419)
T ss_pred EEEecCCCee--EEeecCCCccCCCC
Confidence 6777766432 33333334444443
No 270
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=1.7e-11 Score=103.57 Aligned_cols=189 Identities=11% Similarity=0.106 Sum_probs=144.3
Q ss_pred CCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeec----
Q 016982 21 DHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILR---- 96 (379)
Q Consensus 21 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~---- 96 (379)
+..+++.| ....|+-++++.+ ..+..+....+.++++..++-..+|++|+.+|.|..||......+..+....
T Consensus 145 scDly~~g-sg~evYRlNLEqG--rfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s 221 (703)
T KOG2321|consen 145 SCDLYLVG-SGSEVYRLNLEQG--RFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNS 221 (703)
T ss_pred CccEEEee-cCcceEEEEcccc--ccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCC
Confidence 33444444 4457888899887 6677777777899999999999999999999999999998876555543322
Q ss_pred CC-----CceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCC--cEEEEeeCCCeEE
Q 016982 97 LN-----RAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNN--VFLATTSTDGKCR 169 (379)
Q Consensus 97 ~~-----~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~l~~~~~d~~i~ 169 (379)
+. ..|+++.|+.+|-.+++|+.+|.+.|||+++..+.- .-.....-+|..+.|.+.+ +.+++. ....++
T Consensus 222 ~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~---~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~k 297 (703)
T KOG2321|consen 222 HPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL---VKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILK 297 (703)
T ss_pred CccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee---ecccCCccceeeecccccCCCceEEec-chHHhh
Confidence 22 349999999999999999999999999999987421 1113345688999998763 455544 466899
Q ss_pred EEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCC
Q 016982 170 VFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVG 235 (379)
Q Consensus 170 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~ 235 (379)
|||- .+++....+.. ...++.+++-|++.+++++-.+..+..|=+..
T Consensus 298 iWd~------------------~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 298 IWDE------------------CTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred hccc------------------ccCCceeeccc-cCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 9994 67887777765 44599999999999999998888887776544
No 271
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.42 E-value=1.5e-09 Score=102.77 Aligned_cols=315 Identities=13% Similarity=0.187 Sum_probs=185.1
Q ss_pred CcceeEEEeCCCCcEEEEEecCCeEEEE----EecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc-
Q 016982 10 AQCITCHAWSPDHAMVAFCPNNNEVHIY----KLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE- 84 (379)
Q Consensus 10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~- 84 (379)
.+.|.++.+-++...++.+..+|.|.++ +..+...+.+..+ ...|.+++||||+..|+..+.++++.+..-.
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v---d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f 151 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSV---DSGILAASWSPDEELLALVTGEGNLLLMTRDF 151 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE---cCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence 4679999999999989999999999999 6666544555444 4689999999999999999988888775421
Q ss_pred --------------CCcee-------------------------eeE------EeecCCCceeEEEECCCCCEEEEEeC-
Q 016982 85 --------------GSEWV-------------------------PTL------VILRLNRAALCVQWSPKENKFAVGSG- 118 (379)
Q Consensus 85 --------------~~~~~-------------------------~~~------~~~~~~~~v~~~~~~~~~~~l~~~~~- 118 (379)
..+.+ +.. .+. ....-..++|-.||.++|+.+.
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~ 230 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVE 230 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEE
Confidence 00000 000 000 2224567899999999999874
Q ss_pred --C---CeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC---CCeEEEEeccccccccccccCCCccC
Q 016982 119 --A---KTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST---DGKCRVFSTFIKGVDIKEKKEGTSSD 190 (379)
Q Consensus 119 --d---~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~ 190 (379)
. ..++||+-+ +. +.... ..-.+--.+++|.|.|+++|+.-. ...|.+|.
T Consensus 231 ~~~~~~R~iRVy~Re-G~---L~stS-E~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE------------------ 287 (928)
T PF04762_consen 231 PETGSRRVIRVYSRE-GE---LQSTS-EPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE------------------ 287 (928)
T ss_pred cCCCceeEEEEECCC-ce---EEecc-ccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe------------------
Confidence 2 468888755 32 12211 223333457899999999998764 34566664
Q ss_pred CcccceEEEee----cCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCc-eeeeeeee-cCCeeeEEEecCCc--EE
Q 016982 191 TKFGEQILQLD----LSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSP-LAQNVAFR-DLPLRDVLFVSEKM--VI 262 (379)
Q Consensus 191 ~~~~~~~~~~~----~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~-~~~~~~~~-~~~i~~~~~s~~~~--~l 262 (379)
+.|.....|. .....|..+.|++|+..||..-.|. |.+|-..+-.- +.+.+... ...+..+.|+|... +.
T Consensus 288 -rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~ 365 (928)
T PF04762_consen 288 -RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLH 365 (928)
T ss_pred -cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEE
Confidence 3343333332 2345789999999999999876554 99998665421 22333322 23455699999543 33
Q ss_pred EEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceee-ccccccCcccccccccccccccccceeeee
Q 016982 263 GVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLY-GQSKYGVGNDAVESSRTRGGTHVNCINCIV 341 (379)
Q Consensus 263 ~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 341 (379)
+...++.+..+... |.+....... +..... ....+..... +.-+..-..+ |....--.-...|.+++
T Consensus 366 v~t~~g~~~~~~~~----~~v~~s~~~~--~~D~g~---vaVIDG~~lllTpf~~a~VPP---PMs~~~l~~~~~v~~va 433 (928)
T PF04762_consen 366 VLTSNGQYEIYDFA----WDVSRSPGSS--PNDNGT---VAVIDGNKLLLTPFRRAVVPP---PMSSYELELPSPVNDVA 433 (928)
T ss_pred EEecCCcEEEEEEE----EEEEecCCCC--ccCceE---EEEEeCCeEEEecccccCCCc---hHhceEEcCCCCcEEEE
Confidence 44444766655532 3332211000 000000 0000000000 0000000000 11001112246799999
Q ss_pred eecccCCcccceEEEeecCceEEEEeCCC
Q 016982 342 PLREAGSSRITRFTTSGLDGKIVTWDLES 370 (379)
Q Consensus 342 ~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~ 370 (379)
|++++ ..+|.-..||.|.+|....
T Consensus 434 -f~~~~----~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 434 -FSPSN----SRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred -EeCCC----CeEEEEECCCCEEEEEecC
Confidence 66655 4599999999999998654
No 272
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.41 E-value=8.5e-10 Score=91.53 Aligned_cols=147 Identities=12% Similarity=0.095 Sum_probs=114.9
Q ss_pred eccCcceeEEEeCCCCcEEEEEecCC-eEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccC
Q 016982 7 HQFAQCITCHAWSPDHAMVAFCPNNN-EVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEG 85 (379)
Q Consensus 7 ~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~ 85 (379)
.+|...|.-..+..+++-++.|..|| .+-|||..++ ....+...-+.|.++..+|+|++++.+.....+.+.|+++
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~---e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididn 432 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG---EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDN 432 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCc---eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecC
Confidence 45677788888888888899999999 8999999986 4455566678899999999999999998888899999999
Q ss_pred CceeeeEEeecCCCceeEEEECCCCCEEEEEeCCC----eEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEE
Q 016982 86 SEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK----TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLAT 161 (379)
Q Consensus 86 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~ 161 (379)
+.. .+.-....+-|+.+.|||+++++|.+--+| .|+++|+..++. ... ....+.-.+-+|.|++++|..
T Consensus 433 gnv--~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki---y~v--TT~ta~DfsPaFD~d~ryLYf 505 (668)
T COG4946 433 GNV--RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI---YDV--TTPTAYDFSPAFDPDGRYLYF 505 (668)
T ss_pred CCe--eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE---EEe--cCCcccccCcccCCCCcEEEE
Confidence 973 222244567899999999999999986654 588999988762 222 223333456789999988775
Q ss_pred ee
Q 016982 162 TS 163 (379)
Q Consensus 162 ~~ 163 (379)
-+
T Consensus 506 Ls 507 (668)
T COG4946 506 LS 507 (668)
T ss_pred Ee
Confidence 54
No 273
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=1.9e-10 Score=97.04 Aligned_cols=242 Identities=14% Similarity=0.177 Sum_probs=155.4
Q ss_pred eEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeC-----------CCeEEEEe
Q 016982 14 TCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSH-----------DRNSYVWN 82 (379)
Q Consensus 14 ~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------d~~i~vw~ 82 (379)
+-+.|||.|.||++--. .-|.+|--.+ +..++.+. |. .|.-+.|||..+||+|-+. ...+.|||
T Consensus 214 tyv~wSP~GTYL~t~Hk-~GI~lWGG~~--f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHK-QGIALWGGES--FDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eeEEecCCceEEEEEec-cceeeecCcc--HHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence 56899999999999865 4588995332 34445554 54 5789999999999998652 25699999
Q ss_pred ccCCceeeeEEeecCCCce-eEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEE
Q 016982 83 QEGSEWVPTLVILRLNRAA-LCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLAT 161 (379)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~ 161 (379)
+.+|...+.+........+ .-+.||.|++++|.-.. ..|.||+...-. +...- .-....|....|+|.++.||.
T Consensus 289 I~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~---lld~K-slki~gIr~FswsP~~~llAY 363 (698)
T KOG2314|consen 289 IATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFM---LLDKK-SLKISGIRDFSWSPTSNLLAY 363 (698)
T ss_pred ccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCcee---eeccc-ccCCccccCcccCCCcceEEE
Confidence 9999877777543333333 34689999999988776 568887654422 11111 223467889999999888875
Q ss_pred eeC-----CCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEc----------CCC
Q 016982 162 TST-----DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVG----------HNS 226 (379)
Q Consensus 162 ~~~-----d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~----------~d~ 226 (379)
=+. -..+.+..+ ++.+.+++-..++-.=..|.|-.+|.+|+.-- .-.
T Consensus 364 wtpe~~~~parvtL~ev------------------Ps~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~ 425 (698)
T KOG2314|consen 364 WTPETNNIPARVTLMEV------------------PSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFS 425 (698)
T ss_pred EcccccCCcceEEEEec------------------CccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEe
Confidence 332 234555544 55566666555554445678888899887631 112
Q ss_pred eEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE--EEeC--CCeEEEEec-CCCcEEEE
Q 016982 227 MIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG--VGFD--CNPMVFAAD-ETGIWTFI 284 (379)
Q Consensus 227 ~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~--~~~d--~~~~i~~~~-~~~~~~~~ 284 (379)
.+.|+.++...-.+..+. -...|...+|-|.|.-++ .+.+ .++.+|... ..+.|.++
T Consensus 426 n~eIfrireKdIpve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lV 487 (698)
T KOG2314|consen 426 NLEIFRIREKDIPVEVVE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLV 487 (698)
T ss_pred eEEEEEeeccCCCceeee-cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhh
Confidence 355666665443333333 356788999999887655 3322 355566555 33344443
No 274
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.39 E-value=5.9e-09 Score=87.00 Aligned_cols=239 Identities=10% Similarity=0.058 Sum_probs=141.4
Q ss_pred eCCCCcEEEEEec----------CCeEEEEEecCCceEEEEEeccCCC-------ceEEEEEcCCCCEEEEEe-C-CCeE
Q 016982 18 WSPDHAMVAFCPN----------NNEVHIYKLIQEKWEKLHVLQKHDQ-------IVSGIDWSVRSNRIVTVS-H-DRNS 78 (379)
Q Consensus 18 ~s~~~~~l~~~~~----------dg~i~i~~~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~-~-d~~i 78 (379)
+||||+.|+++.. +..|.+||..+. +.+..+..... .-..++++|||++|+... . +..|
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~--~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V 130 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH--LPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAV 130 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccC--cEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEE
Confidence 8999998876654 789999999997 56655553221 234789999999988766 3 6889
Q ss_pred EEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEE-EEeecCCcCE-EEEEEcC-C
Q 016982 79 YVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSK-LIRKRHDSSV-TSVAWHP-N 155 (379)
Q Consensus 79 ~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~-~~~~~~~~~v-~~~~~~p-~ 155 (379)
.+.|+.+++.+..+.. .....-...+++..+ +-+.||......++......... .+......++ ..-.|.+ +
T Consensus 131 ~VvD~~~~kvv~ei~v---p~~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~d 205 (352)
T TIGR02658 131 GVVDLEGKAFVRMMDV---PDCYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKS 205 (352)
T ss_pred EEEECCCCcEEEEEeC---CCCcEEEEecCCccE--EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCC
Confidence 9999999987776643 222222222222222 22334544443333322111111 1101100000 0013455 7
Q ss_pred CcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEee-------cCCcceEEEEECCCCCEEEEEc-----
Q 016982 156 NVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD-------LSFSWAFGVKWSPSGNTLAYVG----- 223 (379)
Q Consensus 156 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~sp~~~~l~~~~----- 223 (379)
|+++....+ |.|.+.|+...... ....+..+. ...+.+.-++++|+++++++..
T Consensus 206 g~~~~vs~e-G~V~~id~~~~~~~-------------~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~ 271 (352)
T TIGR02658 206 GRLVWPTYT-GKIFQIDLSSGDAK-------------FLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAK 271 (352)
T ss_pred CcEEEEecC-CeEEEEecCCCcce-------------ecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCcc
Confidence 777766655 99999996322111 112222211 1233345599999999888742
Q ss_pred -----CCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCc-EEEEE--eCCCeEEEEecCCC
Q 016982 224 -----HNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKM-VIGVG--FDCNPMVFAADETG 279 (379)
Q Consensus 224 -----~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~--~d~~~~i~~~~~~~ 279 (379)
..+.|.++|..+.+.. ..+.. +..+..++++||++ +|.+. .++.+.+++.....
T Consensus 272 ~thk~~~~~V~ViD~~t~kvi-~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 272 WTHKTASRFLFVVDAKTGKRL-RKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred ccccCCCCEEEEEECCCCeEE-EEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence 2258999999887643 55442 56789999999999 66533 46778888866543
No 275
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=6.2e-09 Score=91.64 Aligned_cols=245 Identities=11% Similarity=0.145 Sum_probs=163.7
Q ss_pred cceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCC------------CEEEEEeCCCeE
Q 016982 11 QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRS------------NRIVTVSHDRNS 78 (379)
Q Consensus 11 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------~~l~~~~~d~~i 78 (379)
..-.++.|+|.| +||.|+. ..|.+.|..+- +.++.++.|...|+.+.|.|.. -.|+++...|.|
T Consensus 16 sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~--q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI 91 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSH-SLVSVVDSRSL--QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI 91 (1062)
T ss_pred ccccccccCccc-eEEEecC-ceEEEEehhhh--hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence 346788999865 7888876 47888887764 7888999999999999998742 256788888999
Q ss_pred EEEeccCCceeeeEEeecCCCceeEEEECC---CC-CEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcC
Q 016982 79 YVWNQEGSEWVPTLVILRLNRAALCVQWSP---KE-NKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHP 154 (379)
Q Consensus 79 ~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 154 (379)
.+||...+..+..+ ..+..++..++|-+ +. ..|+.-.....+.+|+..+++..+. . ........|+.+.|
T Consensus 92 il~d~~~~s~~~~l--~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk--~--~ys~~iLs~f~~DP 165 (1062)
T KOG1912|consen 92 ILVDFVLASVINWL--SHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWK--Y--DYSHEILSCFRVDP 165 (1062)
T ss_pred EEEEehhhhhhhhh--cCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeec--c--ccCCcceeeeeeCC
Confidence 99999888644443 66788999999976 33 4666666678999999999874221 1 23334567788988
Q ss_pred -CCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCc-------------------------ceE
Q 016982 155 -NNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFS-------------------------WAF 208 (379)
Q Consensus 155 -~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~v~ 208 (379)
|.+.+..-+..|.+.+-+... ..++. -.++..+.-..|.. ...
T Consensus 166 fd~rh~~~l~s~g~vl~~~~l~----~sep~-------~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a 234 (1062)
T KOG1912|consen 166 FDSRHFCVLGSKGFVLSCKDLG----LSEPD-------VPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCA 234 (1062)
T ss_pred CCcceEEEEccCceEEEEeccC----CCCCC-------CCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHH
Confidence 457777777788887776421 00000 00111111111100 123
Q ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCc--EEE-EEeCCCeEEEEecC
Q 016982 209 GVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKM--VIG-VGFDCNPMVFAADE 277 (379)
Q Consensus 209 ~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~-~~~d~~~~i~~~~~ 277 (379)
.++|+|.-+.++.......+.++|++-... +..+....+.+.-+.|-|+++ .|. .-.+|.+.+|-...
T Consensus 235 ~faf~p~~rn~lfi~~prellv~dle~~~~-l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 235 QFAFSPHWRNILFITFPRELLVFDLEYECC-LAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred hhhcChhhhceEEEEeccceEEEcchhhce-eEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 468888765555556778899999876553 355555556666788888764 444 55788888887554
No 276
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.33 E-value=1.3e-11 Score=116.93 Aligned_cols=192 Identities=12% Similarity=0.101 Sum_probs=148.1
Q ss_pred cCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCC
Q 016982 52 KHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQEN 131 (379)
Q Consensus 52 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~ 131 (379)
.+-..|.++.=+|...+-+||+.||.+++|....++.+..+...+. ..|+.+.|+.+|+.+.++..||.+.+|......
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~ 2284 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKP 2284 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcccCCceeeeccCCceeecccCCcc
Confidence 3445678888888888999999999999999999987777775555 899999999999999999999999999887332
Q ss_pred ceeEEEEEeecCCcCEEEEEEcCCCcEEEEee---CCCeEEEEeccccccccccccCCCccCCcc-cceEEEeecCCcce
Q 016982 132 NWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS---TDGKCRVFSTFIKGVDIKEKKEGTSSDTKF-GEQILQLDLSFSWA 207 (379)
Q Consensus 132 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v 207 (379)
.... ..|.....++.|-. ..+++.+ .++.+.+||.. ... ..++. ..|.+.+
T Consensus 2285 ----~~s~-qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl----------------~~~~~s~v~--~~H~~ga 2339 (2439)
T KOG1064|consen 2285 ----YTSW-QCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTL----------------LPPMNSLVH--TCHDGGA 2339 (2439)
T ss_pred ----eecc-ccCCccccceeeee--hhhhccccCCCCCcccchhcc----------------cCcccceee--eecCCCc
Confidence 2222 57888888888864 5666654 47889999962 111 22233 7899999
Q ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCC
Q 016982 208 FGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETG 279 (379)
Q Consensus 208 ~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~ 279 (379)
+++++.|..++|++|+.+|.|++||++..+ +.+.++. +.....++.++..|.++||..++-+
T Consensus 2340 T~l~~~P~~qllisggr~G~v~l~D~rqrq-l~h~~~~---------~~~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2340 TVLAYAPKHQLLISGGRKGEVCLFDIRQRQ-LRHTFQA---------LDTREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred eEEEEcCcceEEEecCCcCcEEEeehHHHH-HHHHhhh---------hhhhheeeccCcccceEEEEccccc
Confidence 999999999999999999999999998754 3344332 3323344557889999999987654
No 277
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.32 E-value=1.1e-09 Score=91.64 Aligned_cols=240 Identities=15% Similarity=0.117 Sum_probs=157.2
Q ss_pred CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC--------------
Q 016982 10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD-------------- 75 (379)
Q Consensus 10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------------- 75 (379)
.-++..++|||.|.+|++... ..|.+|.-... ..+..+. | ..|..+.|+|.+++|.+-+..
T Consensus 32 ~~p~~~~~~SP~G~~l~~~~~-~~V~~~~g~~~--~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~ 106 (561)
T COG5354 32 NWPVAYVSESPLGTYLFSEHA-AGVECWGGPSK--AKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTS 106 (561)
T ss_pred CcchhheeecCcchheehhhc-cceEEccccch--hheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCccc
Confidence 457889999999999998765 46999987765 3444444 3 368999999999999986543
Q ss_pred -CeEEEEeccCCceeeeEEeecCCCcee-EEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEc
Q 016982 76 -RNSYVWNQEGSEWVPTLVILRLNRAAL-CVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWH 153 (379)
Q Consensus 76 -~~i~vw~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 153 (379)
..+.+||..++..+..+.......-.+ -+.|+-+.+++|-.. ...++|+++ +... ....+..-....+....|+
T Consensus 107 ~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~-t~n~--~~~p~~~lr~~gi~dFsis 182 (561)
T COG5354 107 KNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEI-TDNI--EEHPFKNLRPVGILDFSIS 182 (561)
T ss_pred cCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEec-CCcc--ccCchhhccccceeeEEec
Confidence 359999999998777765443332244 678888887776553 456889887 4331 0111101123568888999
Q ss_pred CCC--cEEEE-----eeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEc---
Q 016982 154 PNN--VFLAT-----TSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVG--- 223 (379)
Q Consensus 154 p~~--~~l~~-----~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--- 223 (379)
|.+ ..|+. .+.++.+++|.+ .....+.+-......-..+.|.+.|++|+.--
T Consensus 183 P~~n~~~la~~tPEk~~kpa~~~i~sI------------------p~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~ 244 (561)
T COG5354 183 PEGNHDELAYWTPEKLNKPAMVRILSI------------------PKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTH 244 (561)
T ss_pred CCCCCceEEEEccccCCCCcEEEEEEc------------------cCCCeeeeeeeEeecccEEEEecCCceEEEEEEEe
Confidence 964 33443 456788999987 33444433322233335789999998876521
Q ss_pred --------CCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE--E-EeCCCeEEEEecCC
Q 016982 224 --------HNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG--V-GFDCNPMVFAADET 278 (379)
Q Consensus 224 --------~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~--~-~~d~~~~i~~~~~~ 278 (379)
....++++++....- .......++|...+|.|.++-++ . -.+..+.+++.+.+
T Consensus 245 ~ksnKsyfgesnLyl~~~~e~~i--~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 245 TKSNKSYFGESNLYLLRITERSI--PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred eecccceeccceEEEEeeccccc--ceeccccccceeeeecccCCceeEEecccccceeecccccc
Confidence 135688888875432 22224478999999999876554 2 34556666666543
No 278
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.31 E-value=1.6e-08 Score=97.66 Aligned_cols=252 Identities=10% Similarity=0.063 Sum_probs=153.1
Q ss_pred eEEEeCCC-CcEEEEEecCCeEEEEEecCCceEEEEEecc--C------------CCceEEEEEcCCCCEEEEEe-CCCe
Q 016982 14 TCHAWSPD-HAMVAFCPNNNEVHIYKLIQEKWEKLHVLQK--H------------DQIVSGIDWSVRSNRIVTVS-HDRN 77 (379)
Q Consensus 14 ~~~~~s~~-~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~--~------------~~~v~~~~~~~~~~~l~~~~-~d~~ 77 (379)
..++++++ ++++++-..++.|+++|..+. .+..+.+ . -.....+++.++++.|+++. .++.
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~---~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~ 647 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN---FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHA 647 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC---EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCce
Confidence 46788874 556666677889999998754 2222221 0 11347899999888776665 4567
Q ss_pred EEEEeccCCceeeeEEeecC---------------CCceeEEEECC-CCCEEEEEeCCCeEEEEEeecCCceeEEEEEe-
Q 016982 78 SYVWNQEGSEWVPTLVILRL---------------NRAALCVQWSP-KENKFAVGSGAKTVCICYYEQENNWWVSKLIR- 140 (379)
Q Consensus 78 i~vw~~~~~~~~~~~~~~~~---------------~~~v~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~- 140 (379)
|+++|..++.. ..+...+. -.....++++| ++..+++...++.|++||...+.. ..+.
T Consensus 648 Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v----~~~~G 722 (1057)
T PLN02919 648 LREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT----RVFSG 722 (1057)
T ss_pred EEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE----EEEec
Confidence 99999877642 22211000 11346799999 556666667788999998866541 1110
Q ss_pred -------e------cCCcCEEEEEEcCCCc-EEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEee-----
Q 016982 141 -------K------RHDSSVTSVAWHPNNV-FLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD----- 201 (379)
Q Consensus 141 -------~------~~~~~v~~~~~~p~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 201 (379)
. ........++++|+++ ++++-+.++.|++||+............+. .......+.
T Consensus 723 ~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~-----~~~~l~~fG~~dG~ 797 (1057)
T PLN02919 723 DGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPT-----FSDNLFKFGDHDGV 797 (1057)
T ss_pred CCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccc-----cCcccccccCCCCc
Confidence 0 0112346799999987 455556678999999742211100000000 000000000
Q ss_pred ---cCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeee--------------cCCeeeEEEecCCcEEEE
Q 016982 202 ---LSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFR--------------DLPLRDVLFVSEKMVIGV 264 (379)
Q Consensus 202 ---~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~--------------~~~i~~~~~s~~~~~l~~ 264 (379)
..-.....++++++|+++++-..++.|++||..++.. ..+.+. -.....++++++|+++++
T Consensus 798 g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v--~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa 875 (1057)
T PLN02919 798 GSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRV--TTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA 875 (1057)
T ss_pred hhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeE--EEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence 0011246899999999888888999999999876542 222211 124678999999997664
Q ss_pred -EeCCCeEEEEecCCCc
Q 016982 265 -GFDCNPMVFAADETGI 280 (379)
Q Consensus 265 -~~d~~~~i~~~~~~~~ 280 (379)
+.++.|++|+......
T Consensus 876 Dt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 876 DTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ECCCCEEEEEECCCCcc
Confidence 4677899999876543
No 279
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.31 E-value=6.6e-08 Score=78.73 Aligned_cols=223 Identities=12% Similarity=0.100 Sum_probs=139.2
Q ss_pred eEEEeCC-CCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEc-CCCCEEEEEeCCCeEEEEeccCCceeee
Q 016982 14 TCHAWSP-DHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWS-VRSNRIVTVSHDRNSYVWNQEGSEWVPT 91 (379)
Q Consensus 14 ~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~vw~~~~~~~~~~ 91 (379)
.++.|.+ ++.++++-...+.|+.|+..++. . ..+.... ...+++. +++ .|+.+...+ +.++|..+++....
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~--~-~~~~~~~--~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGE--V-EVIDLPG--PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTE--E-EEEESSS--EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCe--E-EEEecCC--CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEE
Confidence 3678888 77777777778999999998872 2 2222222 5677777 565 555555544 56669999876555
Q ss_pred EEee--c-CCCceeEEEECCCCCEEEEEeCC--------CeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEE
Q 016982 92 LVIL--R-LNRAALCVQWSPKENKFAVGSGA--------KTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLA 160 (379)
Q Consensus 92 ~~~~--~-~~~~v~~~~~~~~~~~l~~~~~d--------~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 160 (379)
.... . .....+.+++.|+|++.++.... |.+..++.. ++ ...+ .......+.++|+|+++.|+
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~----~~~~-~~~~~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK----VTVV-ADGLGFPNGIAFSPDGKTLY 149 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE----EEEE-EEEESSEEEEEEETTSSEEE
T ss_pred eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce----EEEE-ecCcccccceEECCcchhee
Confidence 5442 1 34678899999999977776543 345444444 22 2223 23345568999999998665
Q ss_pred -EeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCce
Q 016982 161 -TTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPL 239 (379)
Q Consensus 161 -~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~ 239 (379)
+-+..+.|..+++....... ...+....+....+..-.+++..+|++.++....+.|.++|.. ++ +
T Consensus 150 v~ds~~~~i~~~~~~~~~~~~-----------~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~-~ 216 (246)
T PF08450_consen 150 VADSFNGRIWRFDLDADGGEL-----------SNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GK-L 216 (246)
T ss_dssp EEETTTTEEEEEEEETTTCCE-----------EEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SC-E
T ss_pred ecccccceeEEEeccccccce-----------eeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-cc-E
Confidence 55667888888862100000 0112222333333457889999999988877788999999977 44 4
Q ss_pred eeeeeeecCCeeeEEEe-cCCcEE
Q 016982 240 AQNVAFRDLPLRDVLFV-SEKMVI 262 (379)
Q Consensus 240 ~~~~~~~~~~i~~~~~s-~~~~~l 262 (379)
+..+......+++++|. ++.+.|
T Consensus 217 ~~~i~~p~~~~t~~~fgg~~~~~L 240 (246)
T PF08450_consen 217 LREIELPVPRPTNCAFGGPDGKTL 240 (246)
T ss_dssp EEEEE-SSSSEEEEEEESTTSSEE
T ss_pred EEEEcCCCCCEEEEEEECCCCCEE
Confidence 45555544578999995 554443
No 280
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.7e-10 Score=94.90 Aligned_cols=272 Identities=11% Similarity=0.052 Sum_probs=184.7
Q ss_pred eccCcceeEEEeCCCCcEEEEEecCCeEEEEEecC-CceEEEEEeccCCCceEEEEEcCCCCEEEEEeC-CCeEEEEecc
Q 016982 7 HQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQ-EKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSH-DRNSYVWNQE 84 (379)
Q Consensus 7 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~vw~~~ 84 (379)
+-|.+.|+.+..+ -.+++.+++.||.++.|.-.. ...+.+..+..|...|.+++.+-++..++|.+. |..++++|++
T Consensus 6 ymhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 6 YMHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred hcccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEee
Confidence 4588888887765 457999999999999998765 334666777889999999999999999999777 9999999998
Q ss_pred CCceeeeEEeecCCCceeEEEECCC-C-CEEEEE-eCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEE
Q 016982 85 GSEWVPTLVILRLNRAALCVQWSPK-E-NKFAVG-SGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLAT 161 (379)
Q Consensus 85 ~~~~~~~~~~~~~~~~v~~~~~~~~-~-~~l~~~-~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~ 161 (379)
+-..+..+.+...++.+..+ .++. - ..+++. -.++.+.++|-..... ....+..-|..+|.++.+.|.+..+++
T Consensus 85 n~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~--q~~~fkklH~sPV~~i~y~qa~Ds~vS 161 (558)
T KOG0882|consen 85 NFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFC--QDGYFKKLHFSPVKKIRYNQAGDSAVS 161 (558)
T ss_pred ccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcC--ccceecccccCceEEEEeeccccceee
Confidence 87644443332223322221 2221 1 133333 3478899987655442 122233668999999999999999999
Q ss_pred eeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceee
Q 016982 162 TSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQ 241 (379)
Q Consensus 162 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~ 241 (379)
....|.|.-|.... ++..+........+...-+..+.-......++.|+|+|..+.+-+.|..|++++..+++. ++
T Consensus 162 iD~~gmVEyWs~e~---~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGkl-vq 237 (558)
T KOG0882|consen 162 IDISGMVEYWSAEG---PFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKL-VQ 237 (558)
T ss_pred ccccceeEeecCCC---cccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchh-hh
Confidence 99999999998631 111111111111222233333434456678999999999999999999999999877541 11
Q ss_pred ee--------------------------------eeec-CCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEEEEE
Q 016982 242 NV--------------------------------AFRD-LPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKF 286 (379)
Q Consensus 242 ~~--------------------------------~~~~-~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~~~~ 286 (379)
.+ ..|+ ..-+.+.|...|++|.-+.--.+++++++.+...+....
T Consensus 238 eiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~tn~v~ri~gk 315 (558)
T KOG0882|consen 238 EIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTNTVVRILGK 315 (558)
T ss_pred hhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeecCeEEEEecc
Confidence 11 1111 123567888889999988888899999888765555543
No 281
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.28 E-value=1.6e-08 Score=97.79 Aligned_cols=269 Identities=13% Similarity=0.049 Sum_probs=151.5
Q ss_pred EEEEEcCC-CCEEEEEeCCCeEEEEeccCCceeeeEEeecC------------CCceeEEEECCCCCEEEEEeC-CCeEE
Q 016982 58 SGIDWSVR-SNRIVTVSHDRNSYVWNQEGSEWVPTLVILRL------------NRAALCVQWSPKENKFAVGSG-AKTVC 123 (379)
Q Consensus 58 ~~~~~~~~-~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~l~~~~~-d~~v~ 123 (379)
..+++++. ++.+++-+.++.|.++|..... ...+...+. -.....+++.++++.|+++.. ++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNF-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCE-EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 35788875 4556666677889999986542 222211011 123578999998887666554 56788
Q ss_pred EEEeecCCceeEEEEEee-cC---------------CcCEEEEEEcC-CCcEEEEeeCCCeEEEEeccccccccccccCC
Q 016982 124 ICYYEQENNWWVSKLIRK-RH---------------DSSVTSVAWHP-NNVFLATTSTDGKCRVFSTFIKGVDIKEKKEG 186 (379)
Q Consensus 124 i~~~~~~~~~~~~~~~~~-~~---------------~~~v~~~~~~p-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 186 (379)
.+|+.++. ...+.. +. -..-..++++| ++.++++.+.++.|++||........-.....
T Consensus 650 ~id~~~~~----V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~ 725 (1057)
T PLN02919 650 EIDFVNET----VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGY 725 (1057)
T ss_pred EEecCCCE----EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCc
Confidence 88876654 222200 00 11235799999 56677777788999999863211100000000
Q ss_pred CccCCcccceEEEeecCCcceEEEEECCCCCEEE-EEcCCCeEEEEECCCCCceeee------------eee--------
Q 016982 187 TSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLA-YVGHNSMIYFVDDVGPSPLAQN------------VAF-------- 245 (379)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~~i~v~d~~~~~~~~~~------------~~~-------- 245 (379)
. . ...+.. . ....-.....++++|+++.|+ +-+.++.|++||+.++...... +..
T Consensus 726 ~-~-~~~g~~-~-~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~ 801 (1057)
T PLN02919 726 E-R-NLNGSS-G-TSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEV 801 (1057)
T ss_pred c-c-cCCCCc-c-ccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhh
Confidence 0 0 000000 0 000112357799999998554 4556789999998865421100 000
Q ss_pred ecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccc
Q 016982 246 RDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVE 324 (379)
Q Consensus 246 ~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (379)
.-.....++++++|.+++ -..++.|++|+.+....-.+.. .... . +. .|
T Consensus 802 ~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG---~G~~---------G-------~~----dG------- 851 (1057)
T PLN02919 802 LLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAG---TGKA---------G-------FK----DG------- 851 (1057)
T ss_pred hccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEec---cCCc---------C-------CC----CC-------
Confidence 011245889999998666 4567788888876533222111 0000 0 00 00
Q ss_pred cccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCccc
Q 016982 325 SSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQED 373 (379)
Q Consensus 325 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~ 373 (379)
....++-.....|+ +++++ +++++-+.++.|++||+.+++.
T Consensus 852 ---~~~~a~l~~P~GIa-vd~dG----~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 852 ---KALKAQLSEPAGLA-LGENG----RLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ---cccccccCCceEEE-EeCCC----CEEEEECCCCEEEEEECCCCcc
Confidence 00123344567788 66665 8999999999999999988764
No 282
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.28 E-value=2e-09 Score=93.91 Aligned_cols=191 Identities=16% Similarity=0.325 Sum_probs=124.6
Q ss_pred cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982 4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ 83 (379)
Q Consensus 4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~ 83 (379)
.++-+|.+.|.-+.|+.+.+.|-+...+|.|.+|-+-.+.|-...+-....+.|.+++|+.+|..|+..-.||.|.+=.+
T Consensus 65 QtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsv 144 (1189)
T KOG2041|consen 65 QTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSV 144 (1189)
T ss_pred hhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEee
Confidence 46789999999999999999999999999999999987755443333445567899999999999998888888776555
Q ss_pred cCCceeeeEEeecCCCceeEEEECCCC-----------------------------------------------------
Q 016982 84 EGSEWVPTLVILRLNRAALCVQWSPKE----------------------------------------------------- 110 (379)
Q Consensus 84 ~~~~~~~~~~~~~~~~~v~~~~~~~~~----------------------------------------------------- 110 (379)
+..+.-.. .+ .......+.|++|.
T Consensus 145 dGNRIwgK-eL--kg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~ 221 (1189)
T KOG2041|consen 145 DGNRIWGK-EL--KGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGP 221 (1189)
T ss_pred ccceecch-hc--chheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCc
Confidence 44321000 00 00111233344443
Q ss_pred --------CEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCC---------CeEEEEec
Q 016982 111 --------NKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTD---------GKCRVFST 173 (379)
Q Consensus 111 --------~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d---------~~i~v~d~ 173 (379)
..|+++-.+|.+.+..-..... ..+ ....-.+..+.|+++|..|+.++.+ +.|.+|.
T Consensus 222 ~~~v~pdrP~lavcy~nGr~QiMR~eND~~----Pvv-~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys- 295 (1189)
T KOG2041|consen 222 YQPVPPDRPRLAVCYANGRMQIMRSENDPE----PVV-VDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS- 295 (1189)
T ss_pred cccCCCCCCEEEEEEcCceehhhhhcCCCC----CeE-EecccEeecceecCCCcEEEEccCcccccCccccceEEEec-
Confidence 4455555555555422222111 111 1223456788999999999988753 2466664
Q ss_pred cccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEE
Q 016982 174 FIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAY 221 (379)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 221 (379)
+.++.+.+++.....|++++|-..|-.++.
T Consensus 296 ------------------p~G~i~gtlkvpg~~It~lsWEg~gLriA~ 325 (1189)
T KOG2041|consen 296 ------------------PYGHIVGTLKVPGSCITGLSWEGTGLRIAI 325 (1189)
T ss_pred ------------------cchhheEEEecCCceeeeeEEcCCceEEEE
Confidence 567777888777788888888766655544
No 283
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.27 E-value=6.5e-11 Score=99.95 Aligned_cols=211 Identities=12% Similarity=0.067 Sum_probs=148.0
Q ss_pred ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCC-----ceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEE
Q 016982 5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQE-----KWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSY 79 (379)
Q Consensus 5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 79 (379)
.+.+|...|.+++--.+.+-+++++.|++|++|.++.. ...+..+++.|..+|.++.|-.+-++++++ |+.|.
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giH 807 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIH 807 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcce
Confidence 45788889998887777888999999999999999743 234778889999999999999888888765 78899
Q ss_pred EEeccCCceeeeEEeecCCCceeEEEECC--CCCEEEE-EeCCCeEEEEEeecCCceeEEEEE-eecCCcCEEEEEEcCC
Q 016982 80 VWNQEGSEWVPTLVILRLNRAALCVQWSP--KENKFAV-GSGAKTVCICYYEQENNWWVSKLI-RKRHDSSVTSVAWHPN 155 (379)
Q Consensus 80 vw~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~-~~~d~~v~i~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~p~ 155 (379)
+||.--++....+......+.+..+..-| +...+.. ++...+|+++|.+..+-....+.. ..+....+.+++..|.
T Consensus 808 lWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~ 887 (1034)
T KOG4190|consen 808 LWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADK 887 (1034)
T ss_pred eecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccC
Confidence 99987766544333222233333343333 3334444 467889999998876521111111 0344567899999999
Q ss_pred CcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEE-EECC
Q 016982 156 NVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYF-VDDV 234 (379)
Q Consensus 156 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v-~d~~ 234 (379)
|++++.+-.+|.|.+.|. ++++.+..+.........++ .|..+.|+....|.++.+ |...
T Consensus 888 GN~lAa~LSnGci~~LDa------------------R~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhal 948 (1034)
T KOG4190|consen 888 GNKLAAALSNGCIAILDA------------------RNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHAL 948 (1034)
T ss_pred cchhhHHhcCCcEEEEec------------------CCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhc
Confidence 999999999999999996 66776665544333344443 456667777777888888 7644
Q ss_pred CC
Q 016982 235 GP 236 (379)
Q Consensus 235 ~~ 236 (379)
.+
T Consensus 949 dg 950 (1034)
T KOG4190|consen 949 DG 950 (1034)
T ss_pred CC
Confidence 43
No 284
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=5.3e-09 Score=88.53 Aligned_cols=237 Identities=11% Similarity=0.173 Sum_probs=142.2
Q ss_pred cceeEEEeCCCCcEEEEEec-----------CCeEEEEEecCCceEEEEEecc--CCCc-eEEEEEcCCCCEEEEEeCCC
Q 016982 11 QCITCHAWSPDHAMVAFCPN-----------NNEVHIYKLIQEKWEKLHVLQK--HDQI-VSGIDWSVRSNRIVTVSHDR 76 (379)
Q Consensus 11 ~~i~~~~~s~~~~~l~~~~~-----------dg~i~i~~~~~~~~~~~~~~~~--~~~~-v~~~~~~~~~~~l~~~~~d~ 76 (379)
..|.-+.|||+.+||++=+. ...+.|||+.++ ...+.+.. .... -.-..||.|++++|-...+
T Consensus 250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG--~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~- 326 (698)
T KOG2314|consen 250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG--LLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN- 326 (698)
T ss_pred CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcccc--chhcceeccCCCccccceEEeccCCceeEEeccc-
Confidence 35788999999999998543 257999999998 44444443 1222 2346899999999887764
Q ss_pred eEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCC-----CeEEEEEeecCCceeEEEEEeecCCcCEEEEE
Q 016982 77 NSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGA-----KTVCICYYEQENNWWVSKLIRKRHDSSVTSVA 151 (379)
Q Consensus 77 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~ 151 (379)
.|.||+..+-.+.....+ .-..|....|+|.++.||.-... ..+.+..+..... .+.. .-+.-.=..+-
T Consensus 327 sisIyEtpsf~lld~Ksl--ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~---iRt~-nlfnVsDckLh 400 (698)
T KOG2314|consen 327 SISIYETPSFMLLDKKSL--KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKRE---IRTK-NLFNVSDCKLH 400 (698)
T ss_pred eEEEEecCceeeeccccc--CCccccCcccCCCcceEEEEcccccCCcceEEEEecCccce---eeec-cceeeeccEEE
Confidence 689998766432221111 23678999999999988875431 2244433333331 1111 11222223456
Q ss_pred EcCCCcEEEEeeC-------C---CeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEE
Q 016982 152 WHPNNVFLATTST-------D---GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAY 221 (379)
Q Consensus 152 ~~p~~~~l~~~~~-------d---~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 221 (379)
|..+|.+|+.--. . ..+.|+.+. ...-++..... ...|...+|-|.|+.+++
T Consensus 401 WQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrir-----------------eKdIpve~vel-ke~vi~FaWEP~gdkF~v 462 (698)
T KOG2314|consen 401 WQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIR-----------------EKDIPVEVVEL-KESVIAFAWEPHGDKFAV 462 (698)
T ss_pred eccCCcEEEEEEEeeccccccceEeeEEEEEee-----------------ccCCCceeeec-chheeeeeeccCCCeEEE
Confidence 7777777764321 1 124444431 11222222222 456889999999988776
Q ss_pred EcC---CCeEEEEECCCC-Cc--eeeeeeeecCCeeeEEEecCCcEEEE----EeCCCeEEEEec
Q 016982 222 VGH---NSMIYFVDDVGP-SP--LAQNVAFRDLPLRDVLFVSEKMVIGV----GFDCNPMVFAAD 276 (379)
Q Consensus 222 ~~~---d~~i~v~d~~~~-~~--~~~~~~~~~~~i~~~~~s~~~~~l~~----~~d~~~~i~~~~ 276 (379)
-+. ..++.+|.+.+. .. ++..+. ....+.+.|+|.|++++. +..+.+.+++.+
T Consensus 463 i~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 463 ISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTD 525 (698)
T ss_pred EEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecc
Confidence 543 357889987732 21 223333 345788999999998873 335556665544
No 285
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.25 E-value=2.7e-10 Score=92.32 Aligned_cols=162 Identities=14% Similarity=0.051 Sum_probs=111.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeccCCce-eeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeE
Q 016982 57 VSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEW-VPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWV 135 (379)
Q Consensus 57 v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~ 135 (379)
...+..++.++++|.+..+....+++...... ........-....+++.|..+.....++..-|.++-+|.-....+ .
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~-~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG-R 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeeccccc-C
Confidence 34456678888999988888877777654431 122222223444556666665555555555455554444332211 2
Q ss_pred EEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEe-ecCCcceEEEEECC
Q 016982 136 SKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL-DLSFSWAFGVKWSP 214 (379)
Q Consensus 136 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp 214 (379)
.+.+ .+|-..+++++|+||+++++++..|..|++-.. +....+..+ -+|...|..++.-+
T Consensus 144 ~~~~-lGhvSml~dVavS~D~~~IitaDRDEkIRvs~y------------------pa~f~IesfclGH~eFVS~isl~~ 204 (390)
T KOG3914|consen 144 CEPI-LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRY------------------PATFVIESFCLGHKEFVSTISLTD 204 (390)
T ss_pred cchh-hhhhhhhheeeecCCCCEEEEecCCceEEEEec------------------CcccchhhhccccHhheeeeeecc
Confidence 3444 699999999999999999999999999999765 333444455 36888999999876
Q ss_pred CCCEEEEEcCCCeEEEEECCCCCce
Q 016982 215 SGNTLAYVGHNSMIYFVDDVGPSPL 239 (379)
Q Consensus 215 ~~~~l~~~~~d~~i~v~d~~~~~~~ 239 (379)
+. .|+++|.|+++++||+.+++.+
T Consensus 205 ~~-~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 205 NY-LLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred Cc-eeeecCCCCcEEEEecccCCcc
Confidence 54 5899999999999999998754
No 286
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.24 E-value=2.3e-08 Score=83.83 Aligned_cols=235 Identities=14% Similarity=0.152 Sum_probs=149.6
Q ss_pred CcceeEEEeCCCCcEEEEEecCC---------------eEEEEEecCCceEEEEEeccCCCc--eE-EEEEcCCCCEEEE
Q 016982 10 AQCITCHAWSPDHAMVAFCPNNN---------------EVHIYKLIQEKWEKLHVLQKHDQI--VS-GIDWSVRSNRIVT 71 (379)
Q Consensus 10 ~~~i~~~~~s~~~~~l~~~~~dg---------------~i~i~~~~~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~l~~ 71 (379)
...|..+.|||++++|.+-+..+ .+.+||..++ ..+..+..-..+ .. -+.|+-+.+++|-
T Consensus 71 ~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg--~iv~sf~~~~q~~~~Wp~~k~s~~D~y~AR 148 (561)
T COG5354 71 HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASG--MIVFSFNGISQPYLGWPVLKFSIDDKYVAR 148 (561)
T ss_pred cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCc--eeEeeccccCCcccccceeeeeecchhhhh
Confidence 35688899999999999865433 4899999998 667666665554 44 6788888877665
Q ss_pred EeCCCeEEEEeccCCceeeeEEeec-CCCceeEEEECCCC--CEEEE-----EeCCCeEEEEEeecCCceeEEEEEeecC
Q 016982 72 VSHDRNSYVWNQEGSEWVPTLVILR-LNRAALCVQWSPKE--NKFAV-----GSGAKTVCICYYEQENNWWVSKLIRKRH 143 (379)
Q Consensus 72 ~~~d~~i~vw~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--~~l~~-----~~~d~~v~i~~~~~~~~~~~~~~~~~~~ 143 (379)
.. ...+.++++ ++.... ..... ....+....|+|.+ ..|+. .+.++.+++|.+..+.... .+.+ .
T Consensus 149 vv-~~sl~i~e~-t~n~~~-~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~-tk~l---f 221 (561)
T COG5354 149 VV-GSSLYIHEI-TDNIEE-HPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLV-TKNL---F 221 (561)
T ss_pred hc-cCeEEEEec-CCcccc-CchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeee-eeee---E
Confidence 53 346999997 443111 11111 13678889999953 34444 3457889998887554321 2222 1
Q ss_pred CcCEEEEEEcCCCcEEEEeeC-----------CCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEE
Q 016982 144 DSSVTSVAWHPNNVFLATTST-----------DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKW 212 (379)
Q Consensus 144 ~~~v~~~~~~p~~~~l~~~~~-----------d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 212 (379)
...=..+.|++.|++|+.--. ...+.|+++. ...+.....-.++|...+|
T Consensus 222 k~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~-------------------e~~i~V~~~~~~pVhdf~W 282 (561)
T COG5354 222 KVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT-------------------ERSIPVEKDLKDPVHDFTW 282 (561)
T ss_pred eecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeec-------------------ccccceeccccccceeeee
Confidence 112246889999887664211 2457777751 1112111134678999999
Q ss_pred CCCCCEEEEEc--CCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeC---CCeEEEEec
Q 016982 213 SPSGNTLAYVG--HNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFD---CNPMVFAAD 276 (379)
Q Consensus 213 sp~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d---~~~~i~~~~ 276 (379)
.|.++.+++.+ .+..+.++|++.+ +... .....=+.+.|+|.++++. +|.| +.+.+|+..
T Consensus 283 ~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~--~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~ 348 (561)
T COG5354 283 EPLSSRFAVISGYMPASVSVFDLRGN--LRFY--FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPA 348 (561)
T ss_pred cccCCceeEEecccccceeecccccc--eEEe--cCCcccccccccCcccEEEEecCCccccceEEeccC
Confidence 99888776654 6778999998876 2222 2344556788999999877 5554 356666544
No 287
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.24 E-value=8.4e-10 Score=89.56 Aligned_cols=154 Identities=14% Similarity=0.131 Sum_probs=107.5
Q ss_pred ceeEEEeCCCCcEEEEEecCCeEEEEEecCCc--eEEEEEeccCCCceEEEEEcCCCCEEEEE---eCCCeEEEEeccCC
Q 016982 12 CITCHAWSPDHAMVAFCPNNNEVHIYKLIQEK--WEKLHVLQKHDQIVSGIDWSVRSNRIVTV---SHDRNSYVWNQEGS 86 (379)
Q Consensus 12 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~d~~i~vw~~~~~ 86 (379)
.+..+..+|.+++||++..+....++++.... .+....... ...-+++.|..+......+ +....+.+|....+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 34455678899999999888887788776542 233333322 2233445554444444443 34445666666554
Q ss_pred ceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCC
Q 016982 87 EWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDG 166 (379)
Q Consensus 87 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~ 166 (379)
... ...+|-..+++++|+||++.|+++..|..|++-.+.... ....+..+|..-|..++.-++ +.|++++.|+
T Consensus 143 ~~~---~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f---~IesfclGH~eFVS~isl~~~-~~LlS~sGD~ 215 (390)
T KOG3914|consen 143 RCE---PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATF---VIESFCLGHKEFVSTISLTDN-YLLLSGSGDK 215 (390)
T ss_pred Ccc---hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCccc---chhhhccccHhheeeeeeccC-ceeeecCCCC
Confidence 422 236899999999999999999999999999996555443 344444789999999999854 5689999999
Q ss_pred eEEEEec
Q 016982 167 KCRVFST 173 (379)
Q Consensus 167 ~i~v~d~ 173 (379)
++++||+
T Consensus 216 tlr~Wd~ 222 (390)
T KOG3914|consen 216 TLRLWDI 222 (390)
T ss_pred cEEEEec
Confidence 9999997
No 288
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.23 E-value=1.5e-08 Score=78.04 Aligned_cols=227 Identities=9% Similarity=0.003 Sum_probs=143.8
Q ss_pred cCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCC-----CCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEE
Q 016982 30 NNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVR-----SNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCV 104 (379)
Q Consensus 30 ~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~ 104 (379)
....|.+|++.++....+... ..+.|.|. ..+|+.|+..|...+|...+.+....+. ..+...|+-+
T Consensus 50 ~t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~c-d~snn~v~~~ 121 (344)
T KOG4532|consen 50 KTISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQC-DVSNNDVTLV 121 (344)
T ss_pred ceeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeee-cccccchhhh
Confidence 445677787766521122222 34556553 3578999899999999998765222221 2223322211
Q ss_pred E-ECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccc
Q 016982 105 Q-WSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEK 183 (379)
Q Consensus 105 ~-~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 183 (379)
. ..-....+..++.|.++++.+++.+.. ...+ ....-.+.+++++++++++++.+....|..|.+.
T Consensus 122 ~r~cd~~~~~~i~sndht~k~~~~~~~s~---~~~~-h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id--------- 188 (344)
T KOG4532|consen 122 KRYCDLKFPLNIASNDHTGKTMVVSGDSN---KFAV-HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAID--------- 188 (344)
T ss_pred hhhcccccceeeccCCcceeEEEEecCcc---ccee-eccccceeeeEEcCCCceEEEecCCCcceEEEeC---------
Confidence 1 111233567788899999998887762 2222 1111237899999999999999999999999872
Q ss_pred cCCCccCCcccceEEEe--ecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceee----eeeeecCCeeeEEEec
Q 016982 184 KEGTSSDTKFGEQILQL--DLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQ----NVAFRDLPLRDVLFVS 257 (379)
Q Consensus 184 ~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~----~~~~~~~~i~~~~~s~ 257 (379)
..++.+..+ ......-.+..|+.....+|++..||++.|||++....+.. +-..|.+.+..+.|++
T Consensus 189 --------~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl 260 (344)
T KOG4532|consen 189 --------DESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSL 260 (344)
T ss_pred --------CccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecC
Confidence 333333322 12233456788999999999999999999999987543322 2234788999999998
Q ss_pred CCc--EEE-EEeCCCeEEEEecCCCcEEEEE
Q 016982 258 EKM--VIG-VGFDCNPMVFAADETGIWTFIK 285 (379)
Q Consensus 258 ~~~--~l~-~~~d~~~~i~~~~~~~~~~~~~ 285 (379)
.|. +|. +-.-+.+.+.+.......+++.
T Consensus 261 ~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~ 291 (344)
T KOG4532|consen 261 YGLLDLLFISEHFSRVHVVDTRNYVNHQVIV 291 (344)
T ss_pred CCcceEEEEecCcceEEEEEcccCceeeEEe
Confidence 664 333 4455567777766655444444
No 289
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.22 E-value=1.1e-07 Score=74.39 Aligned_cols=220 Identities=12% Similarity=0.116 Sum_probs=131.1
Q ss_pred EEeCCCCcEEEEEecCCeEEEEEecCCceEEE---EEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeE
Q 016982 16 HAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKL---HVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTL 92 (379)
Q Consensus 16 ~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~ 92 (379)
++.+++|++||.- .|..|.|-..+++--..+ ...+.....=..++||||+..||.+...|+|+++|+...++- .+
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VI 80 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeE-Ec
Confidence 5678899999886 667888876665411111 222222234578999999999999999999999999865421 11
Q ss_pred Ee-----ecCCCceeEEEECCC------CCEEEEEeCCCeEEEEEeecC--CceeEEEE--EeecCCcCEEEEEEcCCCc
Q 016982 93 VI-----LRLNRAALCVQWSPK------ENKFAVGSGAKTVCICYYEQE--NNWWVSKL--IRKRHDSSVTSVAWHPNNV 157 (379)
Q Consensus 93 ~~-----~~~~~~v~~~~~~~~------~~~l~~~~~d~~v~i~~~~~~--~~~~~~~~--~~~~~~~~v~~~~~~p~~~ 157 (379)
.. ......|..+.|-+. ...|++-..+|.++-|-+..+ +....... +...+...|.++.++|..+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 10 112345666767542 225666677888887766432 22111111 1133567899999999988
Q ss_pred EEEEeeCC-----------CeEEEEecccccccccc---ccCCCccCCcccceE--EE-----e-ecCCcceEEEEECCC
Q 016982 158 FLATTSTD-----------GKCRVFSTFIKGVDIKE---KKEGTSSDTKFGEQI--LQ-----L-DLSFSWAFGVKWSPS 215 (379)
Q Consensus 158 ~l~~~~~d-----------~~i~v~d~~~~~~~~~~---~~~~~~~~~~~~~~~--~~-----~-~~~~~~v~~~~~sp~ 215 (379)
+|++|+.. .-+..|.+-...-.... .........+..... .. . ......|..|..|||
T Consensus 161 LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPd 240 (282)
T PF15492_consen 161 LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPD 240 (282)
T ss_pred EEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCC
Confidence 88877641 12556654211000000 000000000000000 01 1 123567999999999
Q ss_pred CCEEEEEcCCCeEEEEECCCCC
Q 016982 216 GNTLAYVGHNSMIYFVDDVGPS 237 (379)
Q Consensus 216 ~~~l~~~~~d~~i~v~d~~~~~ 237 (379)
|..||+...+|.|.+|++.+-.
T Consensus 241 g~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 241 GSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred CCEEEEEEcCCeEEEEecCcch
Confidence 9999999999999999988754
No 290
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.18 E-value=1.1e-09 Score=83.71 Aligned_cols=200 Identities=12% Similarity=0.111 Sum_probs=115.7
Q ss_pred eeEEEeCCCCcEEEEEecCCeEEEEEecCC----------ceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 016982 13 ITCHAWSPDHAMVAFCPNNNEVHIYKLIQE----------KWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWN 82 (379)
Q Consensus 13 i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~ 82 (379)
|+.+.++-+ ..|+++..++.+..+...+. ...+...+..|..+-.+-+.+-.++.++++..||.+.+.+
T Consensus 39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 666666543 34566656555554443221 1122333333433322223333467899999999999998
Q ss_pred ccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeC-----CCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCC-
Q 016982 83 QEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSG-----AKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNN- 156 (379)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~- 156 (379)
.+............|. .-.+.++...++.+.++.- -+..+.|+++..+. .... ......|.+++-+|..
T Consensus 118 ~~~~~~~~~~i~~~~~-~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t---~~~~-~~~~~~v~~l~~hp~qq 192 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHS-GSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKT---LIPS-KKALDAVTALCSHPAQQ 192 (319)
T ss_pred chHHHhhhhhcccccc-cccccceeecccEEecCCcceEeeccceeeeccccccc---cccc-ccccccchhhhCCcccc
Confidence 7652110000000111 1122223333444444321 23455666655442 1111 1222348999999965
Q ss_pred cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECC-CCCEEEEEcCCCeEEEEECCC
Q 016982 157 VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSP-SGNTLAYVGHNSMIYFVDDVG 235 (379)
Q Consensus 157 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~i~v~d~~~ 235 (379)
+.+++|+.||.+-+||.+ .-..+...+..|..+++.+-|+| ++..|+++++||.+.-||..+
T Consensus 193 ~~v~cgt~dg~~~l~d~r-----------------n~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 193 HLVCCGTDDGIVGLWDAR-----------------NVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cEEEEecCCCeEEEEEcc-----------------cccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 667788899999999972 22334455678899999999999 688899999999999999654
No 291
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.17 E-value=4.8e-07 Score=73.10 Aligned_cols=232 Identities=11% Similarity=0.002 Sum_probs=141.7
Q ss_pred ceeEEEeCC-CCcEEEEEecCC-eEEEEEecCCceEEEEEeccCCCce--EEEEEcCCCCEEEEEeC-----CCeEEEEe
Q 016982 12 CITCHAWSP-DHAMVAFCPNNN-EVHIYKLIQEKWEKLHVLQKHDQIV--SGIDWSVRSNRIVTVSH-----DRNSYVWN 82 (379)
Q Consensus 12 ~i~~~~~s~-~~~~l~~~~~dg-~i~i~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~-----d~~i~vw~ 82 (379)
.-..++.+| .+..++.+.+-| ...+||..++ +....+....+.- -.-.||+||++|++.-. .|.|-|||
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g--~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd 83 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTG--QLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYD 83 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCC--ceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEE
Confidence 345678889 566777887765 4778999887 4444444332221 23579999999988643 47899999
Q ss_pred ccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeC------------------CCeEEEEEeecCCceeEEEEEeecCC
Q 016982 83 QEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSG------------------AKTVCICYYEQENNWWVSKLIRKRHD 144 (379)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------d~~v~i~~~~~~~~~~~~~~~~~~~~ 144 (379)
... .+...-++..+.-....+.+.|||+.|+++.. +-++.+.|..++........-...|.
T Consensus 84 ~~~-~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~ 162 (305)
T PF07433_consen 84 AAR-GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQ 162 (305)
T ss_pred CcC-CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccc
Confidence 982 33344444556666788999999988887642 12233333444442111111113366
Q ss_pred cCEEEEEEcCCCcEEEEeeCCCe-------EEEEeccccccccccccCCCccCCcccceEEEee-------cCCcceEEE
Q 016982 145 SSVTSVAWHPNNVFLATTSTDGK-------CRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD-------LSFSWAFGV 210 (379)
Q Consensus 145 ~~v~~~~~~p~~~~l~~~~~d~~-------i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~ 210 (379)
..+..+++.++|..++..-..|. +-+++- ++.+..+. .-.+.+-++
T Consensus 163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--------------------g~~~~~~~~p~~~~~~l~~Y~gSI 222 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--------------------GGALRLLPAPEEQWRRLNGYIGSI 222 (305)
T ss_pred cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--------------------CCcceeccCChHHHHhhCCceEEE
Confidence 78899999988876655433332 333321 12122111 224668999
Q ss_pred EECCCCCEEEEEc-CCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEeCCCe
Q 016982 211 KWSPSGNTLAYVG-HNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNP 270 (379)
Q Consensus 211 ~~sp~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~ 270 (379)
++++++.++++++ ..+.+.+||..++. ++.... -..+..++-.+++ +++++..+.+
T Consensus 223 a~~~~g~~ia~tsPrGg~~~~~d~~tg~-~~~~~~--l~D~cGva~~~~~-f~~ssG~G~~ 279 (305)
T PF07433_consen 223 AADRDGRLIAVTSPRGGRVAVWDAATGR-LLGSVP--LPDACGVAPTDDG-FLVSSGQGQL 279 (305)
T ss_pred EEeCCCCEEEEECCCCCEEEEEECCCCC-Eeeccc--cCceeeeeecCCc-eEEeCCCccE
Confidence 9999999887665 67889999988876 323322 2345666666666 6666666554
No 292
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.14 E-value=3.2e-10 Score=98.96 Aligned_cols=206 Identities=16% Similarity=0.148 Sum_probs=150.1
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCC--CEEEEEeCCCeEEEEEeecCC
Q 016982 54 DQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKE--NKFAVGSGAKTVCICYYEQEN 131 (379)
Q Consensus 54 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~v~i~~~~~~~ 131 (379)
.+++.++.++|.|+-++.++.-| +.+-|+...-..+.....-..-.|-.+.|+|.. .+-++......-.+|++....
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 45778899999999999998876 667777665333333222233457778888753 344444444555689887665
Q ss_pred ceeEEEEEeecCCcCEEEEEEcCCC-cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEE
Q 016982 132 NWWVSKLIRKRHDSSVTSVAWHPNN-VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGV 210 (379)
Q Consensus 132 ~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 210 (379)
...+.-.+ .+|...++.+.|+|+. ..+++++.|-.+..||++ ....++..+..-......+
T Consensus 103 ~~aIef~l-hghsraitd~n~~~q~pdVlatcsvdt~vh~wd~r-----------------Sp~~p~ys~~~w~s~asqV 164 (1081)
T KOG0309|consen 103 SNAIEFVL-HGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMR-----------------SPHRPFYSTSSWRSAASQV 164 (1081)
T ss_pred ccceEEEE-ecCccceeccccCCCCCcceeeccccccceeeecc-----------------CCCcceeeeecccccCcee
Confidence 43333333 8999999999999976 688999999999999972 3445566665445567789
Q ss_pred EECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEec--CCcEEEEEeCCCeEEEEecCC
Q 016982 211 KWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVS--EKMVIGVGFDCNPMVFAADET 278 (379)
Q Consensus 211 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~d~~~~i~~~~~~ 278 (379)
+|+-....+.+.+..+.|.+||++.+......+++|-..|+.+.|.. .+.++.++.|+.+.+|+.+..
T Consensus 165 kwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS 234 (1081)
T KOG0309|consen 165 KWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS 234 (1081)
T ss_pred eecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence 99874333444566778999999999888899999888899999976 466777999999999998753
No 293
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=6e-09 Score=92.06 Aligned_cols=185 Identities=13% Similarity=0.220 Sum_probs=129.5
Q ss_pred CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCcee
Q 016982 10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWV 89 (379)
Q Consensus 10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~ 89 (379)
.+.++|++++ +++|+.|+.+|.|++++.... . .+...|+.. ..+|.++++|+.||+|.|-.+-+.+..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~---~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~ 106 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN---P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEI 106 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCc---c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccc
Confidence 4667788876 589999999999999998764 3 333445443 667999999999999999999888744
Q ss_pred eeEEeecCCCceeEEEECCC-----CCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC
Q 016982 90 PTLVILRLNRAALCVQWSPK-----ENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST 164 (379)
Q Consensus 90 ~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 164 (379)
..+ ....++.+++++|+ .+.+++|+..| +.++.-+--..+... .+ ....++|.++.| .|+++|-++.
T Consensus 107 ~~~---df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l-~~~eG~I~~i~W--~g~lIAWand 178 (846)
T KOG2066|consen 107 TQY---DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VL-SEGEGPIHSIKW--RGNLIAWAND 178 (846)
T ss_pred eeE---ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-ee-ecCccceEEEEe--cCcEEEEecC
Confidence 444 35789999999997 56899999888 666543222211111 23 567789999999 5889999887
Q ss_pred CCeEEEEeccccccccccccCCCccCCcccceEEEeecCCc------ceEEEEECCCCCEEEEEcCCCeEEEEECCC
Q 016982 165 DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFS------WAFGVKWSPSGNTLAYVGHNSMIYFVDDVG 235 (379)
Q Consensus 165 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~ 235 (379)
+| |++||+ .+.+.+..++.... ....+.|.++.+ |+. |...+|+|..++.
T Consensus 179 ~G-v~vyd~------------------~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVI-GW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 179 DG-VKVYDT------------------PTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVI-GWGDSVKICSIKK 234 (846)
T ss_pred CC-cEEEec------------------cccceeeccCCCCCCCCcccCCCceEecCCCe-EEE-ecCCeEEEEEEec
Confidence 77 899997 33333333322211 234678887665 444 4566788888773
No 294
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.12 E-value=1.4e-07 Score=82.08 Aligned_cols=270 Identities=8% Similarity=0.039 Sum_probs=150.5
Q ss_pred CCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCc
Q 016982 21 DHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRA 100 (379)
Q Consensus 21 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~ 100 (379)
.+..+++++.+|.|..+|..++ +.+............+.. ++..++.++.++.+..+|..+++..-.... ...
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG--~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~---~~~ 136 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETG--KRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKL---SSE 136 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCC--cEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeecc---Cce
Confidence 3567888888899999999887 444443332221122222 466788888899999999999875444322 222
Q ss_pred eeE-EEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCC--cCEEEEEEcCCCcEEEEeeCCCeEEEEeccccc
Q 016982 101 ALC-VQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHD--SSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKG 177 (379)
Q Consensus 101 v~~-~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~ 177 (379)
+.+ ... .+..++.++.++.+..+|.++++..+..... .... ......... + ..++.+..++.+..+|.
T Consensus 137 ~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~-~~~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~---- 207 (377)
T TIGR03300 137 VLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRV-TPALTLRGSASPVIA-D-GGVLVGFAGGKLVALDL---- 207 (377)
T ss_pred eecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccC-CCceeecCCCCCEEE-C-CEEEEECCCCEEEEEEc----
Confidence 221 111 3456777888999999999887632211110 0000 000111111 2 46777788889988886
Q ss_pred cccccccCCCccCCcccceEEEeecC--C-----cceEEEEECC--CCCEEEEEcCCCeEEEEECCCCCceeeeeeeecC
Q 016982 178 VDIKEKKEGTSSDTKFGEQILQLDLS--F-----SWAFGVKWSP--SGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDL 248 (379)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~v~~~~~sp--~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 248 (379)
.+++.+-+.... . .....+.-+| .+..+++++.+|.++.||..+++.. ..... .
T Consensus 208 --------------~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~-W~~~~--~ 270 (377)
T TIGR03300 208 --------------QTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVL-WKRDA--S 270 (377)
T ss_pred --------------cCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEE-Eeecc--C
Confidence 333332221100 0 0000011112 2556777888999999999887643 32221 1
Q ss_pred CeeeEEEecCCcEEEEEeCCCeEEEEecCCC-cEEEEEEecccccCCCCCccCCCcccccceeeccccccCccccccccc
Q 016982 249 PLRDVLFVSEKMVIGVGFDCNPMVFAADETG-IWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSR 327 (379)
Q Consensus 249 ~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (379)
....+.. .++.+++++.++.+..++..... .|+....
T Consensus 271 ~~~~p~~-~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~----------------------------------------- 308 (377)
T TIGR03300 271 SYQGPAV-DDNRLYVTDADGVVVALDRRSGSELWKNDEL----------------------------------------- 308 (377)
T ss_pred CccCceE-eCCEEEEECCCCeEEEEECCCCcEEEccccc-----------------------------------------
Confidence 1122222 24556667778888888875432 3442110
Q ss_pred ccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCccccccC
Q 016982 328 TRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDLLNY 377 (379)
Q Consensus 328 ~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~~~~ 377 (379)
.+. ...... . . +..|++++.||.|.++|..+++.+..+
T Consensus 309 ---~~~--~~ssp~-i--~----g~~l~~~~~~G~l~~~d~~tG~~~~~~ 346 (377)
T TIGR03300 309 ---KYR--QLTAPA-V--V----GGYLVVGDFEGYLHWLSREDGSFVARL 346 (377)
T ss_pred ---cCC--ccccCE-E--E----CCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence 000 011111 1 1 257888999999999999998887654
No 295
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.10 E-value=5.9e-08 Score=85.71 Aligned_cols=106 Identities=14% Similarity=0.319 Sum_probs=74.7
Q ss_pred eeccCcceeEEEeCCCC------------cEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCC---C-CEE
Q 016982 6 VHQFAQCITCHAWSPDH------------AMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVR---S-NRI 69 (379)
Q Consensus 6 ~~~~~~~i~~~~~s~~~------------~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~-~~l 69 (379)
+-.|...|+.+.|.|-. -+||++...|.|.+||...+ ..+..+..|.+++..+.|-+. . ..|
T Consensus 51 ie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~--s~~~~l~~~~~~~qdl~W~~~rd~Srd~L 128 (1062)
T KOG1912|consen 51 IELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA--SVINWLSHSNDSVQDLCWVPARDDSRDVL 128 (1062)
T ss_pred cccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh--hhhhhhcCCCcchhheeeeeccCcchhee
Confidence 45678999999998732 25778888999999999886 566778888999999999763 3 456
Q ss_pred EEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECC-CCCEEEE
Q 016982 70 VTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSP-KENKFAV 115 (379)
Q Consensus 70 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~ 115 (379)
+.-.....+.+|+..+|+..-.. ........|+.+.| |.+.+..
T Consensus 129 laIh~ss~lvLwntdtG~k~Wk~--~ys~~iLs~f~~DPfd~rh~~~ 173 (1062)
T KOG1912|consen 129 LAIHGSSTLVLWNTDTGEKFWKY--DYSHEILSCFRVDPFDSRHFCV 173 (1062)
T ss_pred EEecCCcEEEEEEccCCceeecc--ccCCcceeeeeeCCCCcceEEE
Confidence 66666788999999988743332 22234445566666 4333333
No 296
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.10 E-value=1e-09 Score=83.92 Aligned_cols=204 Identities=14% Similarity=0.120 Sum_probs=117.6
Q ss_pred CCCCcEEEEEecCCeEEEEEecCCceEEEEEecc-CCCceEEEEEcCCCCEEEEEe-----CCCeEEEEeccCCceeeeE
Q 016982 19 SPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQK-HDQIVSGIDWSVRSNRIVTVS-----HDRNSYVWNQEGSEWVPTL 92 (379)
Q Consensus 19 s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-----~d~~i~vw~~~~~~~~~~~ 92 (379)
+-.++.++++..||.+.+++.+.- +...+.+.. |.+. .+..+...++.|.++. .-+..+.|+++..+.....
T Consensus 98 s~~~t~V~~~~~dg~~~v~s~~~~-~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~ 175 (319)
T KOG4714|consen 98 TMTDNRVCIGYADGSLAVFSTDKD-LALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPS 175 (319)
T ss_pred cccCCceEecCCCceEEEEechHH-Hhhhhhcccccccc-cccceeecccEEecCCcceEeeccceeeeccccccccccc
Confidence 335677999999999999987652 122222111 1111 1222223344444432 1234566666544322111
Q ss_pred EeecCCCceeEEEECC-CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCC-CcEEEEeeCCCeEEE
Q 016982 93 VILRLNRAALCVQWSP-KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPN-NVFLATTSTDGKCRV 170 (379)
Q Consensus 93 ~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~d~~i~v 170 (379)
......|.+++-+| ....+++|+.||.+.+||.+.... ....+ ..|+.++..+-|+|. +..|+++++||.+..
T Consensus 176 --~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~--p~S~l-~ahk~~i~eV~FHpk~p~~Lft~sedGslw~ 250 (319)
T KOG4714|consen 176 --KKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM--PVSLL-KAHKAEIWEVHFHPKNPEHLFTCSEDGSLWH 250 (319)
T ss_pred --ccccccchhhhCCcccccEEEEecCCCeEEEEEcccccc--hHHHH-HHhhhhhhheeccCCCchheeEecCCCcEEE
Confidence 11223489999999 456778888899999999988742 23344 789999999999995 588999999999999
Q ss_pred EeccccccccccccCCCccCCcccceEEE---e----ecCCcceEEEEECCCCCEEEEEcCCCeEEEEE
Q 016982 171 FSTFIKGVDIKEKKEGTSSDTKFGEQILQ---L----DLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVD 232 (379)
Q Consensus 171 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d 232 (379)
||..+.-+...+..... ...-.+.+++. + ......|+++.. -|..|++|+.-+.|++++
T Consensus 251 wdas~~~l~i~~~~s~~-s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV--~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 251 WDASTTFLSISNQASVI-SSWLSGDPVKSRIEITSLLPSRSLSINSFDV--LGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred EcCCCceEEecCccccc-cccccCCcccceEeeeccccccceeeeeeec--cCceEEeccccceEEEec
Confidence 99753222222111100 00111111111 1 111223444333 377788888878888775
No 297
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.07 E-value=6.1e-07 Score=70.36 Aligned_cols=236 Identities=13% Similarity=0.135 Sum_probs=125.1
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEE-EeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccc
Q 016982 103 CVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKL-IRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIK 181 (379)
Q Consensus 103 ~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~ 181 (379)
.++.+.+|+.||+.- |..|.|-..+..-...+.+. +.......-+.++|+||+..||.+...|+|++||+.+
T Consensus 2 ~~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g------ 74 (282)
T PF15492_consen 2 HLALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG------ 74 (282)
T ss_pred ceeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc------
Confidence 356778888887765 55666543332211111111 1133334567899999999999999999999999742
Q ss_pred cccCCCccCCcccceEEEee-------cCCcceEEEEECCCC------CEEEEEcCCCeEEEEECCC----CCceeeeee
Q 016982 182 EKKEGTSSDTKFGEQILQLD-------LSFSWAFGVKWSPSG------NTLAYVGHNSMIYFVDDVG----PSPLAQNVA 244 (379)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~sp~~------~~l~~~~~d~~i~v~d~~~----~~~~~~~~~ 244 (379)
..+..+. .-...|..+.|-+-. ..|++-..+|.++=|-+.. +.+....+.
T Consensus 75 -------------~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfs 141 (282)
T PF15492_consen 75 -------------SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFS 141 (282)
T ss_pred -------------ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEE
Confidence 1111111 113456667665521 2355556788777765422 111222322
Q ss_pred e---ecCCeeeEEEecCCcEEE-EEeCC-CeEEEEecCCC--cEEEEEEecccccCCCCCccCCCcc-----cccceeec
Q 016982 245 F---RDLPLRDVLFVSEKMVIG-VGFDC-NPMVFAADETG--IWTFIKFLDERKTSSSGPKYGSQFS-----EAFGKLYG 312 (379)
Q Consensus 245 ~---~~~~i~~~~~s~~~~~l~-~~~d~-~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 312 (379)
. ....|.++.++|.-++|. +|... .-........| .|+++.....-. .....+.... ..+.++.
T Consensus 142 f~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk---~v~~~~~~~~~~~~~~~~~~~~- 217 (282)
T PF15492_consen 142 FSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYK---QVTSSEDDITASSKRRGLLRIP- 217 (282)
T ss_pred ecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEE---EccccCccccccccccceeecc-
Confidence 2 356799999999888776 33222 11112222222 344433111100 0000000000 0000000
Q ss_pred cccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCccccccC
Q 016982 313 QSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDLLNY 377 (379)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~~~~ 377 (379)
.... ......-.+.|..|. .+||+ ..||+...+|.|.+|++.+....+..
T Consensus 218 ---~~~~-------fs~~~~~~d~i~kmS-lSPdg----~~La~ih~sG~lsLW~iPsL~~~~~W 267 (282)
T PF15492_consen 218 ---SFKF-------FSRQGQEQDGIFKMS-LSPDG----SLLACIHFSGSLSLWEIPSLRLQRSW 267 (282)
T ss_pred ---ceee-------eeccccCCCceEEEE-ECCCC----CEEEEEEcCCeEEEEecCcchhhccc
Confidence 0000 000012356788888 77766 99999999999999999987666544
No 298
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=1.9e-07 Score=83.53 Aligned_cols=202 Identities=15% Similarity=0.114 Sum_probs=135.6
Q ss_pred EeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCc-eEEEEEcCCCCEEEEEeCCC-----eEEEEeccCC----
Q 016982 17 AWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQI-VSGIDWSVRSNRIVTVSHDR-----NSYVWNQEGS---- 86 (379)
Q Consensus 17 ~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d~-----~i~vw~~~~~---- 86 (379)
+|++.+..+|.|+.+|.|.+++-.- +..+.++.+... |..+....+.++|++.+.|+ .+++|+++.-
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s~---~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSSF---QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred EEcCCCceEEEeeccccEEEecccc---eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 4668889999999999999887543 566778887777 55554444446888877664 4899998643
Q ss_pred --ceeeeEEeec-----CCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEE
Q 016982 87 --EWVPTLVILR-----LNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFL 159 (379)
Q Consensus 87 --~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l 159 (379)
++.......+ ...++.+++.+.+-+.+|+|-.+|.|..+.=+-.........+......+|+.+.+..+++.+
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~ 186 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSV 186 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCcee
Confidence 2221122222 246789999999999999999999998864322111111222214456799999999988764
Q ss_pred EEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCce
Q 016982 160 ATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPL 239 (379)
Q Consensus 160 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~ 239 (379)
+.......|.+|.+. .++ .....+..|...+.|..+++....+++++ +..+.+||....+.+
T Consensus 187 lFv~Tt~~V~~y~l~----------------gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~c 248 (933)
T KOG2114|consen 187 LFVATTEQVMLYSLS----------------GRT-PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPC 248 (933)
T ss_pred EEEEecceeEEEEec----------------CCC-cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCccee
Confidence 444455679999872 112 23455777788899999998665455554 457999997765543
No 299
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.03 E-value=3.8e-06 Score=68.45 Aligned_cols=185 Identities=14% Similarity=0.103 Sum_probs=121.0
Q ss_pred eeEEEeC-CCCcEEEEEecCCeEEEEEecCCceEEEEEec--c-CCCceEEEEEcCCCCEEEEEeCC--------CeEEE
Q 016982 13 ITCHAWS-PDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQ--K-HDQIVSGIDWSVRSNRIVTVSHD--------RNSYV 80 (379)
Q Consensus 13 i~~~~~s-~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~--~-~~~~v~~~~~~~~~~~l~~~~~d--------~~i~v 80 (379)
...+++. +++++++ +.. +.+.++|..+++.+.+.... . .....+.+++.|+|++.++.... |.|..
T Consensus 42 ~~G~~~~~~~g~l~v-~~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYV-ADS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTSEEEE-EET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCCEEEE-EEc-CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence 6667777 6655554 444 45666698888666666653 1 34568899999999977776533 45667
Q ss_pred EeccCCceeeeEEeecCCCceeEEEECCCCCEEEE-EeCCCeEEEEEeecCCc-eeEEEEEeecCC--cCEEEEEEcCCC
Q 016982 81 WNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAV-GSGAKTVCICYYEQENN-WWVSKLIRKRHD--SSVTSVAWHPNN 156 (379)
Q Consensus 81 w~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~v~i~~~~~~~~-~~~~~~~~~~~~--~~v~~~~~~p~~ 156 (379)
++.. ++..... ..-.....++|+|+++.|++ -+..+.|..++++.... ....+.+..... +..-.+++..+|
T Consensus 120 ~~~~-~~~~~~~---~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G 195 (246)
T PF08450_consen 120 IDPD-GKVTVVA---DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG 195 (246)
T ss_dssp EETT-SEEEEEE---EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS
T ss_pred ECCC-CeEEEEe---cCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC
Confidence 7766 4432222 22355689999999987764 45678898888875442 211222212222 247889999999
Q ss_pred cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEE-CCCCCEEEEE
Q 016982 157 VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKW-SPSGNTLAYV 222 (379)
Q Consensus 157 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-sp~~~~l~~~ 222 (379)
++.++....+.|.+++. .++.+..+......+++++| -|+.+.|+..
T Consensus 196 ~l~va~~~~~~I~~~~p-------------------~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 196 NLWVADWGGGRIVVFDP-------------------DGKLLREIELPVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp -EEEEEETTTEEEEEET-------------------TSCEEEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred CEEEEEcCCCEEEEECC-------------------CccEEEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence 98888888999999984 47878777766568999999 4676665544
No 300
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.02 E-value=2.7e-09 Score=84.99 Aligned_cols=161 Identities=16% Similarity=0.199 Sum_probs=117.9
Q ss_pred EEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCC---ceeEEEEEeecCCcC
Q 016982 70 VTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQEN---NWWVSKLIRKRHDSS 146 (379)
Q Consensus 70 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~---~~~~~~~~~~~~~~~ 146 (379)
++.+.+-.+.+-|++++.. .. ...++.|.++.|...+++++.|+.+|.|..+|++.+. .|.. .. ..|...
T Consensus 228 fs~G~sqqv~L~nvetg~~-qs---f~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a-~r--lyh~Ss 300 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QS---FQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA-QR--LYHDSS 300 (425)
T ss_pred ecccccceeEEEEeecccc-cc---cccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce-EE--EEcCcc
Confidence 4556667788999988852 11 2367899999999999999999999999999998763 2322 33 358999
Q ss_pred EEEEEEcC-CCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccce---EEEeecCCcceE--EEEECCCCCEEE
Q 016982 147 VTSVAWHP-NNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQ---ILQLDLSFSWAF--GVKWSPSGNTLA 220 (379)
Q Consensus 147 v~~~~~~p-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~--~~~~sp~~~~l~ 220 (379)
|+++..-. ++++|++.+.+|+|++||+ +.-++ +.+.++|...-. -+...+....++
T Consensus 301 vtslq~Lq~s~q~LmaS~M~gkikLyD~------------------R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~ 362 (425)
T KOG2695|consen 301 VTSLQILQFSQQKLMASDMTGKIKLYDL------------------RATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIF 362 (425)
T ss_pred hhhhhhhccccceEeeccCcCceeEeee------------------hhhhcccceeeeecccccccccccccccccceEE
Confidence 99988776 6789999999999999997 33344 888888854322 234456677888
Q ss_pred EEcCCCeEEEEECCCCCceeeeeeeec----CCeeeEEEe
Q 016982 221 YVGHNSMIYFVDDVGPSPLAQNVAFRD----LPLRDVLFV 256 (379)
Q Consensus 221 ~~~~d~~i~v~d~~~~~~~~~~~~~~~----~~i~~~~~s 256 (379)
+++.|...+||.+..+. ++.+++... ..+.+++|.
T Consensus 363 s~GdDcytRiWsl~~gh-Ll~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 363 SVGDDCYTRIWSLDSGH-LLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred EccCeeEEEEEecccCc-eeeccCCCCccccccccceehh
Confidence 89999999999998875 445554322 234455553
No 301
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.01 E-value=1.8e-06 Score=75.28 Aligned_cols=227 Identities=13% Similarity=0.087 Sum_probs=125.8
Q ss_pred CCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEE-EEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCC
Q 016982 21 DHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSG-IDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNR 99 (379)
Q Consensus 21 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~ 99 (379)
++..+++++.+|.++.+|..++ +.+...... ..+.+ ... .+..++.++.++.+..||.++++.+-.........
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG--~~~W~~~~~-~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~ 178 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDG--KELWRAKLS-SEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPAL 178 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCC--cEeeeeccC-ceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCce
Confidence 4566778888999999999887 344333322 22221 112 24567777889999999999987544432211100
Q ss_pred c---eeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCC----cCEEEEEEcC--CCcEEEEeeCCCeEEE
Q 016982 100 A---ALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHD----SSVTSVAWHP--NNVFLATTSTDGKCRV 170 (379)
Q Consensus 100 ~---v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~p--~~~~l~~~~~d~~i~v 170 (379)
. ..+... .+..++.+..++.+..+|.++++..+....- .... .....+.-+| .+..++.++.+|.+..
T Consensus 179 ~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~-~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a 255 (377)
T TIGR03300 179 TLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVA-LPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAA 255 (377)
T ss_pred eecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccc-cCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEE
Confidence 0 011111 1346777888899999888877632211110 0000 0000011111 2456777888999999
Q ss_pred EeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCe
Q 016982 171 FSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPL 250 (379)
Q Consensus 171 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i 250 (379)
+|. .+++.+-..... ....+. ..+..++.++.+|.++.+|..+++.+.+.-.......
T Consensus 256 ~d~------------------~tG~~~W~~~~~--~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ 313 (377)
T TIGR03300 256 LDL------------------RSGRVLWKRDAS--SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQL 313 (377)
T ss_pred EEC------------------CCCcEEEeeccC--CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCcc
Confidence 996 455554433311 111222 2466788888999999999988764422211111112
Q ss_pred eeEEEecCCcEEEEEeCCCeEEEEecCC
Q 016982 251 RDVLFVSEKMVIGVGFDCNPMVFAADET 278 (379)
Q Consensus 251 ~~~~~s~~~~~l~~~~d~~~~i~~~~~~ 278 (379)
.+... .++.+++.+.++.+++++....
T Consensus 314 ssp~i-~g~~l~~~~~~G~l~~~d~~tG 340 (377)
T TIGR03300 314 TAPAV-VGGYLVVGDFEGYLHWLSREDG 340 (377)
T ss_pred ccCEE-ECCEEEEEeCCCEEEEEECCCC
Confidence 22222 2455666778888888886543
No 302
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.98 E-value=1.6e-09 Score=91.82 Aligned_cols=205 Identities=11% Similarity=0.107 Sum_probs=137.3
Q ss_pred EEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCC-----ceeeeEEeecCCCceeEEEECCCCCEEEEEeCCC
Q 016982 46 KLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGS-----EWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120 (379)
Q Consensus 46 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 120 (379)
.+..+.+|...|..++--.+.+-+++++.|++|++|.++.. .....+....|+.+|.++.|-.+.+.++++ |+
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 34567889999998887777888999999999999998643 233566678899999999999888877765 68
Q ss_pred eEEEEEeecCCceeEEEEEeecCCcCEEEEEEcC--CCcEEEEe-eCCCeEEEEeccccccccccccCCCccCCcccceE
Q 016982 121 TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHP--NNVFLATT-STDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQI 197 (379)
Q Consensus 121 ~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (379)
.|++||.-.+.. +.+.......+.+..+..-| +...++.+ +...+|+++|. +..+..
T Consensus 805 giHlWDPFigr~--Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~Da------------------Rsce~~ 864 (1034)
T KOG4190|consen 805 GIHLWDPFIGRL--LAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDA------------------RSCEWT 864 (1034)
T ss_pred cceeecccccch--hHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeec------------------ccccce
Confidence 899999755442 11111111222223333333 33444444 67889999996 444444
Q ss_pred EEe-----ecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeE
Q 016982 198 LQL-----DLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPM 271 (379)
Q Consensus 198 ~~~-----~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~ 271 (379)
..+ .+.+..+.+++..|.|++++.+-..|.|.+.|.++++. +............++ .|..+.|+ +..|..+.
T Consensus 865 ~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~v-INswrpmecdllqla-apsdq~L~~saldHsla 942 (1034)
T KOG4190|consen 865 CELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKV-INSWRPMECDLLQLA-APSDQALAQSALDHSLA 942 (1034)
T ss_pred eeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCce-eccCCcccchhhhhc-CchhHHHHhhcccceeE
Confidence 333 23345688999999999999999999999999998863 333333333333333 24455555 55666666
Q ss_pred E-EE
Q 016982 272 V-FA 274 (379)
Q Consensus 272 i-~~ 274 (379)
+ |.
T Consensus 943 VnWh 946 (1034)
T KOG4190|consen 943 VNWH 946 (1034)
T ss_pred eeeh
Confidence 6 44
No 303
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.97 E-value=4.1e-10 Score=100.35 Aligned_cols=218 Identities=18% Similarity=0.202 Sum_probs=148.4
Q ss_pred ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCC--eEEEEe
Q 016982 5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDR--NSYVWN 82 (379)
Q Consensus 5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~vw~ 82 (379)
.++.|...-+|++|+-+.+.|++|+-.|.|++|++.++ ........|..+|+-+.-+-+|..+++.+.-. -..+|+
T Consensus 1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG--~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG--SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred hhhccccceeeEEeecCCceEEeeeccceEEEEEccCc--cccccccccccccccccccCCcceeeeeccccCchHHHhc
Confidence 45678889999999999999999999999999999998 56677789999999999999998776655433 477999
Q ss_pred ccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEe--ecCCcCEEEEEEcCCCcEEE
Q 016982 83 QEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIR--KRHDSSVTSVAWHPNNVFLA 160 (379)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~l~ 160 (379)
+..-- -+... -..-.++.|+.....-+.|+......+||+.+... +...+. ......-++..|+|+.++++
T Consensus 1174 ~~s~~-~~~Hs----f~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~--l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1174 ASSTG-GPRHS----FDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSP--LQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred ccccc-Ccccc----ccccceeehhhhHHHHHhcccccceEEEecccCcH--HHHhcCcchhhhhhccccccCCCcceEe
Confidence 86521 11111 13456788887655556666666788999998874 111110 12222337788999988776
Q ss_pred EeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCcee
Q 016982 161 TTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA 240 (379)
Q Consensus 161 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~ 240 (379)
.|| .+||+ +..+.++.|...... -.-.|+|+|..++..+ .|||+++-+- +
T Consensus 1247 ---ndG--vLWDv------------------R~~~aIh~FD~ft~~-~~G~FHP~g~eVIINS-----EIwD~RTF~l-L 1296 (1516)
T KOG1832|consen 1247 ---NDG--VLWDV------------------RIPEAIHRFDQFTDY-GGGGFHPSGNEVIINS-----EIWDMRTFKL-L 1296 (1516)
T ss_pred ---eCc--eeeee------------------ccHHHHhhhhhheec-ccccccCCCceEEeec-----hhhhhHHHHH-H
Confidence 355 37997 444555555433322 2346999999998876 4899988652 2
Q ss_pred eeeeeecCCeeeEEEecCCcEEE
Q 016982 241 QNVAFRDLPLRDVLFVSEKMVIG 263 (379)
Q Consensus 241 ~~~~~~~~~i~~~~~s~~~~~l~ 263 (379)
..+.. -.-..+.|...|..+.
T Consensus 1297 h~VP~--Ldqc~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1297 HSVPS--LDQCAVTFNSTGDVMY 1317 (1516)
T ss_pred hcCcc--ccceEEEeccCccchh
Confidence 33321 1224567777666554
No 304
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.97 E-value=3.4e-08 Score=77.88 Aligned_cols=209 Identities=11% Similarity=0.106 Sum_probs=138.0
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCc---eeeeEEeecC------------CCceeEEEECCCC--CEEEEE
Q 016982 54 DQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSE---WVPTLVILRL------------NRAALCVQWSPKE--NKFAVG 116 (379)
Q Consensus 54 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~---~~~~~~~~~~------------~~~v~~~~~~~~~--~~l~~~ 116 (379)
...|+++.|...|.+|++|...|.|.++.-+... ......++.| ...|..+.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4578999999999999999999999999754432 1011111222 2457788887654 356777
Q ss_pred eCCCeEEEEEeecCCce---------------------------------------eEEEEEeecCCcCEEEEEEcCCCc
Q 016982 117 SGAKTVCICYYEQENNW---------------------------------------WVSKLIRKRHDSSVTSVAWHPNNV 157 (379)
Q Consensus 117 ~~d~~v~i~~~~~~~~~---------------------------------------~~~~~~~~~~~~~v~~~~~~p~~~ 157 (379)
+.|++|++|.+...... ...+.....|.-.+.+++|+.|..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 78999999988654100 001111145677788999998877
Q ss_pred EEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCC-----cceEEEEECCC-CCEEEEEcCCCeEEEE
Q 016982 158 FLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSF-----SWAFGVKWSPS-GNTLAYVGHNSMIYFV 231 (379)
Q Consensus 158 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~sp~-~~~l~~~~~d~~i~v~ 231 (379)
.++++ .|=.|.+|++..... .-.+..+..|. .-|++..|+|. ...+...+..|.|++-
T Consensus 186 t~lSa-DdLrINLWnl~i~D~---------------sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~ 249 (460)
T COG5170 186 TLLSA-DDLRINLWNLEIIDG---------------SFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN 249 (460)
T ss_pred eeeec-cceeeeeccccccCC---------------ceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEeh
Confidence 77765 567899998732110 11122333332 34788999995 4556677889999999
Q ss_pred ECCCCCcee-----ee----------eeeecCCeeeEEEecCCcEEEEEeCCCeEEEEecCC
Q 016982 232 DDVGPSPLA-----QN----------VAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADET 278 (379)
Q Consensus 232 d~~~~~~~~-----~~----------~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~ 278 (379)
|++...-+. .. +..-...|..+.|+++|+++++-.-.++.+|+.+..
T Consensus 250 DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~ 311 (460)
T COG5170 250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMA 311 (460)
T ss_pred hhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccc
Confidence 998542111 11 111124578899999999999988889999998754
No 305
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.96 E-value=4.8e-09 Score=57.97 Aligned_cols=38 Identities=24% Similarity=0.483 Sum_probs=36.6
Q ss_pred EEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 016982 45 EKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWN 82 (379)
Q Consensus 45 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~ 82 (379)
+++.++.+|...|++++|+|++++|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 67889999999999999999999999999999999997
No 306
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.95 E-value=4.9e-07 Score=73.06 Aligned_cols=189 Identities=11% Similarity=0.114 Sum_probs=128.3
Q ss_pred EEeCCCCcEEEEEe-----cCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEe-----------------
Q 016982 16 HAWSPDHAMVAFCP-----NNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVS----------------- 73 (379)
Q Consensus 16 ~~~s~~~~~l~~~~-----~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------------- 73 (379)
-.||+||++|++.- ..|.|-|||... .++.+..+..|.-.-..+.+.|||+.|+.+.
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~-~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~ 134 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAAR-GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLD 134 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcC-CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChh
Confidence 57999999998863 358999999993 3688888988877778899999998887762
Q ss_pred -CCCeEEEEeccCCceeeeEEe--ecCCCceeEEEECCCCCEEEEEeCCCe-----EEEEEeecCCceeEEEEEe-----
Q 016982 74 -HDRNSYVWNQEGSEWVPTLVI--LRLNRAALCVQWSPKENKFAVGSGAKT-----VCICYYEQENNWWVSKLIR----- 140 (379)
Q Consensus 74 -~d~~i~vw~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~-----v~i~~~~~~~~~~~~~~~~----- 140 (379)
.+..+.+.|..+++.+....+ ..|...+..+++.++|..++..-..|. --+.-.+.+.. ...+.
T Consensus 135 tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~---~~~~~~p~~~ 211 (305)
T PF07433_consen 135 TMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA---LRLLPAPEEQ 211 (305)
T ss_pred hcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc---ceeccCChHH
Confidence 123466677888887777665 347788999999999887666544332 11222222221 11110
Q ss_pred -ecCCcCEEEEEEcCCCcEEE-EeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCE
Q 016982 141 -KRHDSSVTSVAWHPNNVFLA-TTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNT 218 (379)
Q Consensus 141 -~~~~~~v~~~~~~p~~~~l~-~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 218 (379)
....+.+-+|++++++.+++ ++-..+.+.+||. .++..+..... ..+..++-.+++ +
T Consensus 212 ~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~------------------~tg~~~~~~~l--~D~cGva~~~~~-f 270 (305)
T PF07433_consen 212 WRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDA------------------ATGRLLGSVPL--PDACGVAPTDDG-F 270 (305)
T ss_pred HHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEEC------------------CCCCEeecccc--CceeeeeecCCc-e
Confidence 23456789999999997775 4556788999996 66776665543 336677777777 5
Q ss_pred EEEEcCCCeEEE
Q 016982 219 LAYVGHNSMIYF 230 (379)
Q Consensus 219 l~~~~~d~~i~v 230 (379)
+++. ..|.+..
T Consensus 271 ~~ss-G~G~~~~ 281 (305)
T PF07433_consen 271 LVSS-GQGQLIR 281 (305)
T ss_pred EEeC-CCccEEE
Confidence 5544 4454433
No 307
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1.3e-07 Score=77.15 Aligned_cols=245 Identities=11% Similarity=0.023 Sum_probs=144.8
Q ss_pred eeccCcceeEEEeCCCCc-EEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCC-CEEEEEeCCCeEEEEec
Q 016982 6 VHQFAQCITCHAWSPDHA-MVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRS-NRIVTVSHDRNSYVWNQ 83 (379)
Q Consensus 6 ~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~vw~~ 83 (379)
+..|...|..++|||..+ ++..++.+..|+|.|+++. ..+..+..+ ..+.+++|.-+. ++|..|..+|.|.+||+
T Consensus 189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~--~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~ 265 (463)
T KOG1645|consen 189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS--CVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDM 265 (463)
T ss_pred ccccchhhhhhccCccccceeeeeccCceEEEEecccc--eeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEc
Confidence 456788999999999776 7888899999999999997 566677766 789999998876 67888889999999999
Q ss_pred cCCcee-eeEEeecCCCceeEEEECC------CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCC
Q 016982 84 EGSEWV-PTLVILRLNRAALCVQWSP------KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNN 156 (379)
Q Consensus 84 ~~~~~~-~~~~~~~~~~~v~~~~~~~------~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 156 (379)
+..+-. ..+...-...+|..++.-+ .|.+++....+ +..|++........ ..+..+..+.+.+++..+..
T Consensus 266 R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p-~vlele~pG~cismqy~~~s 342 (463)
T KOG1645|consen 266 RQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLP-CVLELEPPGICISMQYHGVS 342 (463)
T ss_pred cCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCC-cccccCCCcceeeeeecCcc
Confidence 876411 1111111223444444322 34444444432 45566544332111 11113456677777777755
Q ss_pred cEEEEeeCCC-------eEEEEeccccccccccccCCCccCCcccceEEEe-ecC-Cc---c---eEEEEECCCCCEEE-
Q 016982 157 VFLATTSTDG-------KCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL-DLS-FS---W---AFGVKWSPSGNTLA- 220 (379)
Q Consensus 157 ~~l~~~~~d~-------~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~---~---v~~~~~sp~~~~l~- 220 (379)
+.++...... .+... . +. ..+..+..- ..+ .+ + -..+.-.++.++++
T Consensus 343 nh~l~tyRs~pn~p~~r~il~~-~-----d~-----------~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~ 405 (463)
T KOG1645|consen 343 NHLLLTYRSNPNFPQSRFILGR-I-----DF-----------RDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVV 405 (463)
T ss_pred ceEEEEecCCCCCccceeeeee-e-----cc-----------ccCceeeeecccccCCcccccccccceeccccccEEEE
Confidence 5555443321 11111 0 11 111111110 000 00 0 01111133445554
Q ss_pred EEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEec--CCcEEEEEeCCCeEEEEe
Q 016982 221 YVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVS--EKMVIGVGFDCNPMVFAA 275 (379)
Q Consensus 221 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~d~~~~i~~~ 275 (379)
++...+.+.+||..+.. +++++.. ..+|.+++... .+.+|+.-.|..+.||..
T Consensus 406 ~gd~tn~lil~D~~s~e-vvQ~l~~-~epv~Dicp~~~n~~syLa~LTd~~v~Iyk~ 460 (463)
T KOG1645|consen 406 VGDSTNELILQDPHSFE-VVQTLAL-SEPVLDICPNDTNGSSYLALLTDDRVHIYKN 460 (463)
T ss_pred ecCCcceeEEeccchhh-eeeeccc-CcceeecceeecCCcchhhheecceEEEEec
Confidence 45566899999988876 4577664 47888877655 356888888888888864
No 308
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=4.7e-08 Score=80.85 Aligned_cols=287 Identities=14% Similarity=0.107 Sum_probs=171.4
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCc-eeeeEEeecCCCceeEEEECCCCCEEEEEeC-CCeEEEEEeecC
Q 016982 53 HDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSE-WVPTLVILRLNRAALCVQWSPKENKFAVGSG-AKTVCICYYEQE 130 (379)
Q Consensus 53 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~i~~~~~~ 130 (379)
|.+.|+.+.-. -.+++.+++.||.++.|.-..-. ..-......|...+.+++.+-++..+.+.+. |..++++|+..-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 66677766543 35799999999999999755411 1111223457788999999999999999887 999999998875
Q ss_pred CceeEEEEEeecCCcCEEEEEEcCCC--cEEEEe-eCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcce
Q 016982 131 NNWWVSKLIRKRHDSSVTSVAWHPNN--VFLATT-STDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWA 207 (379)
Q Consensus 131 ~~~~~~~~~~~~~~~~v~~~~~~p~~--~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 207 (379)
......+.. ...+.+. ...+|.. ..++.+ -.++.+.++|-. ....+....-..|..+|
T Consensus 87 DminmiKL~--~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~----------------~d~~q~~~fkklH~sPV 147 (558)
T KOG0882|consen 87 DMINMIKLV--DLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGF----------------GDFCQDGYFKKLHFSPV 147 (558)
T ss_pred chhhhcccc--cCCCceE-EecCCCCeeeeEEeecccCCCcEEECCc----------------CCcCccceecccccCce
Confidence 521112221 2222222 2223321 133333 357889999852 11223334445688999
Q ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCCCCc-----eeeee---------eeecCCeeeEEEecCCcEEE-EEeCCCeEE
Q 016982 208 FGVKWSPSGNTLAYVGHNSMIYFVDDVGPSP-----LAQNV---------AFRDLPLRDVLFVSEKMVIG-VGFDCNPMV 272 (379)
Q Consensus 208 ~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~-----~~~~~---------~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i 272 (379)
..+.++|-+..+++....|.|.-|.....-+ +...+ ........++.|+|+|..++ .+.|..|++
T Consensus 148 ~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~ 227 (558)
T KOG0882|consen 148 KKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRG 227 (558)
T ss_pred EEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEE
Confidence 9999999999999998899999998663110 11111 11234578999999999888 678899999
Q ss_pred EEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccc
Q 016982 273 FAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRIT 352 (379)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 352 (379)
+....+...+................+.-. .-.+.+ .-+.+. .+.-|...+..-++|...+ +
T Consensus 228 F~~KtGklvqeiDE~~t~~~~q~ks~y~l~-~VelgR------Rmaver-------elek~~~~~~~~~~fdes~----~ 289 (558)
T KOG0882|consen 228 FVFKTGKLVQEIDEVLTDAQYQPKSPYGLM-HVELGR------RMAVER-------ELEKHGSTVGTNAVFDESG----N 289 (558)
T ss_pred EEeccchhhhhhhccchhhhhccccccccc-eeehhh------hhhHHh-------hHhhhcCcccceeEEcCCC----C
Confidence 998877544433322111111100000000 000000 000000 1223444443334476665 7
Q ss_pred eEEEeecCceEEEEeCCCccccccCC
Q 016982 353 RFTTSGLDGKIVTWDLESQEDLLNYH 378 (379)
Q Consensus 353 ~l~t~~~Dg~v~iW~~~~~~~~~~~~ 378 (379)
+|+-|+-=| |++.++.+++..+.+|
T Consensus 290 flly~t~~g-ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 290 FLLYGTILG-IKVINLDTNTVVRILG 314 (558)
T ss_pred EEEeeccee-EEEEEeecCeEEEEec
Confidence 888877665 7888888888777664
No 309
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.91 E-value=4e-06 Score=72.58 Aligned_cols=118 Identities=16% Similarity=0.133 Sum_probs=80.8
Q ss_pred CCceeEEEECC-CCCEEEEE----eCCCeE----EEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeE
Q 016982 98 NRAALCVQWSP-KENKFAVG----SGAKTV----CICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKC 168 (379)
Q Consensus 98 ~~~v~~~~~~~-~~~~l~~~----~~d~~v----~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i 168 (379)
.....++.|+- +...+.+. +.+|.+ .+|++...+.. ............+.+++++|+...|+.|+.||.|
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klq-rvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSi 283 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQ-RVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSI 283 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCcee-EEEEEEEecCCcceEEecCcccceEEEEecCCeE
Confidence 44556777776 44455443 223432 35555544321 1122225678899999999999999999999999
Q ss_pred EEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Q 016982 169 RVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGP 236 (379)
Q Consensus 169 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~ 236 (379)
.+||.. ..+..+....-.++.++|+|+|..+++|+..|.+.+||+.-.
T Consensus 284 iLyD~~--------------------~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 284 ILYDTT--------------------RGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEEcC--------------------CCeeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 999961 112222222345788999999999999999999999997654
No 310
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.90 E-value=1.6e-05 Score=68.51 Aligned_cols=245 Identities=13% Similarity=0.080 Sum_probs=139.1
Q ss_pred ceeEEEeCCCCcEEEEEecCCeEEEEEecCCc-----------------------------------------eEEEEEe
Q 016982 12 CITCHAWSPDHAMVAFCPNNNEVHIYKLIQEK-----------------------------------------WEKLHVL 50 (379)
Q Consensus 12 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~-----------------------------------------~~~~~~~ 50 (379)
.|+.+.|+++..-|++|...|.|.||....++ +.+...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58999999998899999999999999875321 2233334
Q ss_pred ccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeec------CCCceeEEEECC-----CC---CEEEEE
Q 016982 51 QKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILR------LNRAALCVQWSP-----KE---NKFAVG 116 (379)
Q Consensus 51 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~------~~~~v~~~~~~~-----~~---~~l~~~ 116 (379)
....++|++++.|.-| +++.|..+|.+.|.|++....+....+.. ....++++.|.. |+ -.+++|
T Consensus 83 ~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 4456789999997544 99999999999999998887655544333 234677888862 33 478899
Q ss_pred eCCCeEEEEEeec-C-CceeEEEEEe--ecCCcCEEEEE-EcCC-----------------C---cEEEEeeCCCeEEEE
Q 016982 117 SGAKTVCICYYEQ-E-NNWWVSKLIR--KRHDSSVTSVA-WHPN-----------------N---VFLATTSTDGKCRVF 171 (379)
Q Consensus 117 ~~d~~v~i~~~~~-~-~~~~~~~~~~--~~~~~~v~~~~-~~p~-----------------~---~~l~~~~~d~~i~v~ 171 (379)
...|.+.+|.+.. . ..+. ..... ..+.+++..+. ++.+ + +.++....+..++++
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~-v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~ 240 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFS-VQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF 240 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EE-EEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred eCCCCEEEEEEecCCCCceE-EEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence 9999999998863 2 2221 11111 24556666555 3221 0 123344446778998
Q ss_pred eccccccccccccCCCccCCcccceEEEeecCCcceEEEEEC-----CCCCEEEEEcCCCeEEEEECCCCCceeeeeeee
Q 016982 172 STFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWS-----PSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFR 246 (379)
Q Consensus 172 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 246 (379)
.. ...+..+...........+.+- ..+..|++-..+|.+++|.+..-+++ ..+...
T Consensus 241 ~~------------------~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei-~~~~l~ 301 (395)
T PF08596_consen 241 KP------------------PKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEI-KSVSLP 301 (395)
T ss_dssp -T------------------T---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EE-EEEE-S
T ss_pred eC------------------CCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHh-hcccCC
Confidence 75 3333333322221222334442 24666777789999999999886644 333321
Q ss_pred ----cCCeeeEEEecCCcEEEEEeCCCeEEEEecC
Q 016982 247 ----DLPLRDVLFVSEKMVIGVGFDCNPMVFAADE 277 (379)
Q Consensus 247 ----~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~ 277 (379)
...+...+++++|.++.-.+...+.++..-.
T Consensus 302 ~~~d~~~~~~ssis~~Gdi~~~~gpsE~~l~sv~~ 336 (395)
T PF08596_consen 302 PPLDSRRLSSSSISRNGDIFYWTGPSEIQLFSVWG 336 (395)
T ss_dssp S---HHHHTT-EE-TTS-EEEE-SSSEEEEEEEES
T ss_pred CccccccccccEECCCCCEEEEeCcccEEEEEEEc
Confidence 1235677889999988866666666665443
No 311
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.89 E-value=8.5e-09 Score=56.95 Aligned_cols=38 Identities=26% Similarity=0.288 Sum_probs=36.2
Q ss_pred ceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEE
Q 016982 195 EQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVD 232 (379)
Q Consensus 195 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d 232 (379)
+++.++.+|...|++++|+|++.+|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57888999999999999999999999999999999997
No 312
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.89 E-value=1.5e-06 Score=80.97 Aligned_cols=203 Identities=14% Similarity=0.185 Sum_probs=132.1
Q ss_pred cceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec----cCC
Q 016982 11 QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ----EGS 86 (379)
Q Consensus 11 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~----~~~ 86 (379)
+.|.++.|-.+++-++.+...|.|.+-|.++..++.+.. -...|.+++|+||++.++..+..+++.+-.- -..
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~---vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E 145 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGN---VDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAE 145 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeee---ccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhc
Confidence 589999999999999999999999999988864444433 4568999999999999988888777765432 000
Q ss_pred cee----------------e---eEEee----------------c---CCCceeEEEECCCCCEEEEEe-----CCCeEE
Q 016982 87 EWV----------------P---TLVIL----------------R---LNRAALCVQWSPKENKFAVGS-----GAKTVC 123 (379)
Q Consensus 87 ~~~----------------~---~~~~~----------------~---~~~~v~~~~~~~~~~~l~~~~-----~d~~v~ 123 (379)
+.. + .+... + ....=+.+.|--||.++|+.. ..+.++
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rkir 225 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIR 225 (1265)
T ss_pred cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEE
Confidence 000 0 01000 0 011124589999999999843 237899
Q ss_pred EEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee---CCCeEEEEeccccccccccccCCCccCCcccceEEEe
Q 016982 124 ICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS---TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL 200 (379)
Q Consensus 124 i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (379)
+||-+ +. .........+.-.+++|-|.|..+++-. .|+.|.+|.-.+ .+.++-...+
T Consensus 226 V~drE-g~----Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNG---------------L~hg~f~l~~ 285 (1265)
T KOG1920|consen 226 VYDRE-GA----LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNG---------------LRHGEFVLPF 285 (1265)
T ss_pred Eeccc-ch----hhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCC---------------ccccccccCC
Confidence 99977 32 1111122233446899999999888754 356788886311 1112222223
Q ss_pred ecCCcceEEEEECCCCCEEEE---EcCCCeEEEEECCCC
Q 016982 201 DLSFSWAFGVKWSPSGNTLAY---VGHNSMIYFVDDVGP 236 (379)
Q Consensus 201 ~~~~~~v~~~~~sp~~~~l~~---~~~d~~i~v~d~~~~ 236 (379)
......+..++|+.++..|++ ......|++|-+.+-
T Consensus 286 p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 286 PLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred cccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 333445899999999999987 445556999986653
No 313
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.86 E-value=7.5e-06 Score=66.42 Aligned_cols=217 Identities=11% Similarity=0.024 Sum_probs=124.3
Q ss_pred CCeEEEEEecCCceEEEEEeccCCCceEEEE--EcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECC
Q 016982 31 NNEVHIYKLIQEKWEKLHVLQKHDQIVSGID--WSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSP 108 (379)
Q Consensus 31 dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~ 108 (379)
+|.|..+|..++ +.+....- ...+.... ..+++..+++++.++.|..||..+++..-.... ...+.... ..
T Consensus 2 ~g~l~~~d~~tG--~~~W~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~---~~~~~~~~-~~ 74 (238)
T PF13360_consen 2 DGTLSALDPRTG--KELWSYDL-GPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL---PGPISGAP-VV 74 (238)
T ss_dssp TSEEEEEETTTT--EEEEEEEC-SSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC---SSCGGSGE-EE
T ss_pred CCEEEEEECCCC--CEEEEEEC-CCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec---ccccccee-ee
Confidence 688999999887 45544432 11111222 233566788888999999999999986666543 22222111 22
Q ss_pred CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCc
Q 016982 109 KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTS 188 (379)
Q Consensus 109 ~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 188 (379)
.+..+++++.++.++.+|..+++..+.....................+..++.+..++.+..+|+
T Consensus 75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~--------------- 139 (238)
T PF13360_consen 75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDP--------------- 139 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEET---------------
T ss_pred cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEec---------------
Confidence 45667777788899999988887432211110001111222233334778888888999999996
Q ss_pred cCCcccceEEEeecCCcc----------e-EEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEec
Q 016982 189 SDTKFGEQILQLDLSFSW----------A-FGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVS 257 (379)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~----------v-~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~ 257 (379)
++++.+-........ + ..+.+. ++ .++.++.++.+..+|+.+++.. .... ...+... ...
T Consensus 140 ---~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~-w~~~--~~~~~~~-~~~ 210 (238)
T PF13360_consen 140 ---KTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLATGEKL-WSKP--ISGIYSL-PSV 210 (238)
T ss_dssp ---TTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEEETTTTEEE-EEEC--SS-ECEC-EEC
T ss_pred ---CCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEEECCCCCEE-EEec--CCCccCC-cee
Confidence 566666555443211 1 233333 44 6767777775444499988743 2222 2223332 234
Q ss_pred CCcEEE-EEeCCCeEEEEecCC
Q 016982 258 EKMVIG-VGFDCNPMVFAADET 278 (379)
Q Consensus 258 ~~~~l~-~~~d~~~~i~~~~~~ 278 (379)
++..|. .+.++.+..|+....
T Consensus 211 ~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 211 DGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp CCTEEEEEETTTEEEEEETTTT
T ss_pred eCCEEEEEeCCCEEEEEECCCC
Confidence 455444 556889999887654
No 314
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.86 E-value=3e-06 Score=72.85 Aligned_cols=233 Identities=16% Similarity=0.151 Sum_probs=126.6
Q ss_pred CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEecc-------C---------CCceEEEEEcCCCCEEEEEe
Q 016982 10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQK-------H---------DQIVSGIDWSVRSNRIVTVS 73 (379)
Q Consensus 10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~-------~---------~~~v~~~~~~~~~~~l~~~~ 73 (379)
...+....|||+|+.+|... ++.|++++..++....+ +..+ - -+.-.++-||||+++|+...
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l-T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL-TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES-ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe-ccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence 45688899999999999984 57999999877621111 1111 0 01235788999999998764
Q ss_pred CC-C-----------------------------------eEEEEeccCCceeeeEEe---ecCCCceeEEEECCCCCEEE
Q 016982 74 HD-R-----------------------------------NSYVWNQEGSEWVPTLVI---LRLNRAALCVQWSPKENKFA 114 (379)
Q Consensus 74 ~d-~-----------------------------------~i~vw~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~ 114 (379)
.| . .+.++|+.+++....-.. ......+..+.|.++++.|+
T Consensus 120 ~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~ 199 (353)
T PF00930_consen 120 FDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLW 199 (353)
T ss_dssp EE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred ECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEE
Confidence 32 1 133445544442211111 12334578889999888444
Q ss_pred EEe--CC---CeEEEEEeecCCceeEEEEEeecCCcCEEEEEEc-CCC-cEEEEeeCCCeEEEEeccccccccccccCCC
Q 016982 115 VGS--GA---KTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWH-PNN-VFLATTSTDGKCRVFSTFIKGVDIKEKKEGT 187 (379)
Q Consensus 115 ~~~--~d---~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 187 (379)
+.- .+ -.+.++|..++......+....+.-.......|. +++ .++.....+|.-+||-+.
T Consensus 200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~------------- 266 (353)
T PF00930_consen 200 VQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYD------------- 266 (353)
T ss_dssp EEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEE-------------
T ss_pred EEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEc-------------
Confidence 332 22 2355666666553222222111222222355554 665 444455567776666542
Q ss_pred ccCCcccceEEEeecCCcceEE-EEECCCCCEEE-EEcCC----CeEEEEECC-CCCceeeeeeeecCCeeeEEEecCCc
Q 016982 188 SSDTKFGEQILQLDLSFSWAFG-VKWSPSGNTLA-YVGHN----SMIYFVDDV-GPSPLAQNVAFRDLPLRDVLFVSEKM 260 (379)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~~-~~~sp~~~~l~-~~~~d----~~i~v~d~~-~~~~~~~~~~~~~~~i~~~~~s~~~~ 260 (379)
..+.....+....-.|.. +.++++++.|. ++..+ ..|+..++. .+. .+.+......-..+.|||+|+
T Consensus 267 ----~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~--~~~LT~~~~~~~~~~~Spdg~ 340 (353)
T PF00930_consen 267 ----LDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE--PKCLTCEDGDHYSASFSPDGK 340 (353)
T ss_dssp ----TTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE--EEESSTTSSTTEEEEE-TTSS
T ss_pred ----ccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC--eEeccCCCCCceEEEECCCCC
Confidence 334445566555566744 77888877665 44432 356666666 332 345553333336899999999
Q ss_pred EEE
Q 016982 261 VIG 263 (379)
Q Consensus 261 ~l~ 263 (379)
+++
T Consensus 341 y~v 343 (353)
T PF00930_consen 341 YYV 343 (353)
T ss_dssp EEE
T ss_pred EEE
Confidence 887
No 315
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.84 E-value=1.3e-06 Score=75.45 Aligned_cols=136 Identities=19% Similarity=0.362 Sum_probs=92.8
Q ss_pred EEEEEecCCceEEEEEeccCCCceEEEEEcC-CCCEEEEE----eCCCe----EEEEeccCCceeee-EEeecCCCceeE
Q 016982 34 VHIYKLIQEKWEKLHVLQKHDQIVSGIDWSV-RSNRIVTV----SHDRN----SYVWNQEGSEWVPT-LVILRLNRAALC 103 (379)
Q Consensus 34 i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~----~~d~~----i~vw~~~~~~~~~~-~~~~~~~~~v~~ 103 (379)
+.++.+..++.+.+...+...++ .++.|+- +.+.+.+. +.+|. -.+|++..++..+. ....+.+..+.+
T Consensus 186 l~L~~~~~~klEvL~yirTE~dP-l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ 264 (545)
T PF11768_consen 186 LHLLSCSGGKLEVLSYIRTENDP-LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVIC 264 (545)
T ss_pred EEEEEecCCcEEEEEEEEecCCc-EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceE
Confidence 44444444444555555544444 5777876 34555543 23343 45677766543322 122356789999
Q ss_pred EEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEecccc
Q 016982 104 VQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIK 176 (379)
Q Consensus 104 ~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~ 176 (379)
++++|+...++.|+.||.|.+||...+. .... ...-..+.++|+|+|..+++|+..|.+.+||+...
T Consensus 265 ca~sp~E~kLvlGC~DgSiiLyD~~~~~----t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 265 CARSPSEDKLVLGCEDGSIILYDTTRGV----TLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EecCcccceEEEEecCCeEEEEEcCCCe----eeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 9999999999999999999999987764 2222 33455788999999999999999999999998543
No 316
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.83 E-value=1.2e-05 Score=75.30 Aligned_cols=209 Identities=17% Similarity=0.306 Sum_probs=135.3
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeec----
Q 016982 54 DQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQ---- 129 (379)
Q Consensus 54 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~---- 129 (379)
+..|.++.|..+.+.++.+...|.|.+-|.++...... ..-...|.+++|+||+..++..+..+++.+-+..-
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eiv---g~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~ 144 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIV---GNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIA 144 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeee---eeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchh
Confidence 45899999999999999999999999998887753222 33468999999999999999999888877643310
Q ss_pred CCc---------------eeE-EEEEeec---------------------CCcCEEEEEEcCCCcEEEEee-----CCCe
Q 016982 130 ENN---------------WWV-SKLIRKR---------------------HDSSVTSVAWHPNNVFLATTS-----TDGK 167 (379)
Q Consensus 130 ~~~---------------~~~-~~~~~~~---------------------~~~~v~~~~~~p~~~~l~~~~-----~d~~ 167 (379)
.+. |.- ...+ .+ ..+.=..+.|.-||.++++.. ....
T Consensus 145 E~~L~~d~~~~sk~v~VGwGrkeTqf-rgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGRKETQF-RGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred ccccccccccccccceecccccceee-ecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence 000 000 0001 00 011123589999999999833 2378
Q ss_pred EEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEc---CCCeEEEEECCCCCc--eeee
Q 016982 168 CRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVG---HNSMIYFVDDVGPSP--LAQN 242 (379)
Q Consensus 168 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~---~d~~i~v~d~~~~~~--~~~~ 242 (379)
++|||-. +..-..-....+.-.+++|-|.|..+++-. .|+.|.+|.-+.-.. ....
T Consensus 224 irV~drE-------------------g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~ 284 (1265)
T KOG1920|consen 224 IRVYDRE-------------------GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLP 284 (1265)
T ss_pred EEEeccc-------------------chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccC
Confidence 9999841 211111111123346799999999988753 566899998444221 1111
Q ss_pred eeeecCCeeeEEEecCCcEEEE---EeCCC-eEEEEecCCCcEEEEEE
Q 016982 243 VAFRDLPLRDVLFVSEKMVIGV---GFDCN-PMVFAADETGIWTFIKF 286 (379)
Q Consensus 243 ~~~~~~~i~~~~~s~~~~~l~~---~~d~~-~~i~~~~~~~~~~~~~~ 286 (379)
......++..++|+.++.+|+. ...+. +.+|...+-. |-+-..
T Consensus 285 ~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh-WYLKq~ 331 (1265)
T KOG1920|consen 285 FPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH-WYLKQE 331 (1265)
T ss_pred CcccccchheeeecCCCCceeeeecccccceEEEEEecCeE-EEEEEE
Confidence 2222344899999999999985 44554 8999876643 655443
No 317
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.83 E-value=2e-07 Score=83.90 Aligned_cols=185 Identities=12% Similarity=0.066 Sum_probs=130.3
Q ss_pred CCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCc
Q 016982 21 DHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRA 100 (379)
Q Consensus 21 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~ 100 (379)
++..++.|+-...+..+|+.+. +..+...-....|.-++. +++++.+|...|+|.+-|.++.+.+..+ ..|.+.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~--~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~--~aHs~s 219 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTE--KETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTF--DAHSGS 219 (1118)
T ss_pred CCcceeecchhhheeeeecccc--eeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeee--eccccc
Confidence 3455667766677888888876 343333333334655554 4789999999999999999998866665 779999
Q ss_pred eeEEEECCCCCEEEEEeC---------CCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCC-cEEEEeeCCCeEEE
Q 016982 101 ALCVQWSPKENKFAVGSG---------AKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNN-VFLATTSTDGKCRV 170 (379)
Q Consensus 101 v~~~~~~~~~~~l~~~~~---------d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~i~v 170 (379)
+.++... |+.|++++. |..|+|||++.-.. ..++ .-+.++ .-+.|+|.- ..+++++..|...+
T Consensus 220 iSDfDv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra---l~PI-~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~ 292 (1118)
T KOG1275|consen 220 ISDFDVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA---LSPI-QFPYGP-QFLRFHPSLTTRLAVTSQSGQFQF 292 (1118)
T ss_pred eeeeecc--CCeEEEeecccccccccccchhhhhhhhhhhc---cCCc-ccccCc-hhhhhcccccceEEEEecccceee
Confidence 9877665 889999875 56689999988663 3333 222222 567788863 67888899999999
Q ss_pred EeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEE
Q 016982 171 FSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVD 232 (379)
Q Consensus 171 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d 232 (379)
-|..+ . ......+..+......+..+++|++|+.++.+..+|.|.+|-
T Consensus 293 vd~~~----l----------sNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 293 VDTAT----L----------SNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccccc----c----------CCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 88410 0 011111233333345599999999999999999999999996
No 318
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=2e-07 Score=82.74 Aligned_cols=182 Identities=14% Similarity=0.158 Sum_probs=125.7
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCcee
Q 016982 55 QIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWW 134 (379)
Q Consensus 55 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~ 134 (379)
..++|++++ +++|+.|+.+|.|++++....- ... ..|... ..+|.++++|+.||.|.|..+-+.+.
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~--~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~-- 105 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTN--FDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE-- 105 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCcc--ccc--cccccc------ccCCceEEEecCCCcEEEeeccCCcc--
Confidence 456677776 6789999999999999876542 111 233332 56799999999999999987777663
Q ss_pred EEEEEeecCCcCEEEEEEcCC-----CcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceE-EEeecCCcceE
Q 016982 135 VSKLIRKRHDSSVTSVAWHPN-----NVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQI-LQLDLSFSWAF 208 (379)
Q Consensus 135 ~~~~~~~~~~~~v~~~~~~p~-----~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~ 208 (379)
... .....++.+++++|+ .+.+++|+..| +.++.-. -.+... ..+....++|.
T Consensus 106 -~~~--~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~-----------------wlgnk~~v~l~~~eG~I~ 164 (846)
T KOG2066|consen 106 -ITQ--YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERN-----------------WLGNKDSVVLSEGEGPIH 164 (846)
T ss_pred -cee--EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhh-----------------hhcCccceeeecCccceE
Confidence 222 345678999999998 47899999988 7776420 011111 13444578899
Q ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecC------CeeeEEEecCCcEEEEEeCCCeEEEEec
Q 016982 209 GVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDL------PLRDVLFVSEKMVIGVGFDCNPMVFAAD 276 (379)
Q Consensus 209 ~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~------~i~~~~~s~~~~~l~~~~d~~~~i~~~~ 276 (379)
++.|. |+++|.++.+| |+|||+...+.+ ..++.... ....+.|.++. .|+.|...+|.+....
T Consensus 165 ~i~W~--g~lIAWand~G-v~vyd~~~~~~l-~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 165 SIKWR--GNLIAWANDDG-VKVYDTPTRQRL-TNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGDSVKICSIK 233 (846)
T ss_pred EEEec--CcEEEEecCCC-cEEEecccccee-eccCCCCCCCCcccCCCceEecCCC-eEEEecCCeEEEEEEe
Confidence 99997 88999987665 899998876643 33332222 23467787654 5556777788888765
No 319
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.80 E-value=3.2e-07 Score=82.67 Aligned_cols=187 Identities=11% Similarity=0.116 Sum_probs=130.5
Q ss_pred CEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcC
Q 016982 67 NRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSS 146 (379)
Q Consensus 67 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~ 146 (379)
..++.|+....+..+|+.+.+..+.... ..+.|.-++. +++.+.+|...|+|.+-|.++.+ ....+ ..|.+.
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v--~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~---~iht~-~aHs~s 219 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETRTTNV--SASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFE---TIHTF-DAHSGS 219 (1118)
T ss_pred cceeecchhhheeeeecccceeeeeeec--cCCceEEEEe--cCcEEEeecccceEEeecCCcCc---eeeee-eccccc
Confidence 4566666666788888888765444432 2223555544 58899999999999998888877 56777 899999
Q ss_pred EEEEEEcCCCcEEEEeeC---------CCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCC-C
Q 016982 147 VTSVAWHPNNVFLATTST---------DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPS-G 216 (379)
Q Consensus 147 v~~~~~~p~~~~l~~~~~---------d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~ 216 (379)
+.++.. .|+.|++++. |..|+|||+ +.-+.+..+..+.++ .-+.|+|. .
T Consensus 220 iSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDL------------------Rmmral~PI~~~~~P-~flrf~Psl~ 278 (1118)
T KOG1275|consen 220 ISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDL------------------RMMRALSPIQFPYGP-QFLRFHPSLT 278 (1118)
T ss_pred eeeeec--cCCeEEEeecccccccccccchhhhhhh------------------hhhhccCCcccccCc-hhhhhccccc
Confidence 988766 6889999875 556889987 333333333333332 55778884 4
Q ss_pred CEEEEEcCCCeEEEEE---CCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEE
Q 016982 217 NTLAYVGHNSMIYFVD---DVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWT 282 (379)
Q Consensus 217 ~~l~~~~~d~~i~v~d---~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~ 282 (379)
..+++++..|...+.| +.++..-+..+...+..+..+++|++|..++ +-.++.+.+|...+...+.
T Consensus 279 t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~~~P~Fn 348 (1118)
T KOG1275|consen 279 TRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADRPQPQFN 348 (1118)
T ss_pred ceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCCCCCccC
Confidence 5677888899999999 4444322333333345599999999999999 5678899999866655443
No 320
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.78 E-value=1.3e-06 Score=75.78 Aligned_cols=186 Identities=18% Similarity=0.262 Sum_probs=115.9
Q ss_pred CcceeEEEeCCCCcEEEEEe---cC-CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEE-eCCCe--EEEEe
Q 016982 10 AQCITCHAWSPDHAMVAFCP---NN-NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTV-SHDRN--SYVWN 82 (379)
Q Consensus 10 ~~~i~~~~~s~~~~~l~~~~---~d-g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~--i~vw~ 82 (379)
...+..-+|+|++..++.-. .. ..++++++.+++...+..+.++. ...+|+|||++|+.+ ..|+. |.+.|
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~---~~P~fspDG~~l~f~~~rdg~~~iy~~d 268 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN---GAPAFSPDGSKLAFSSSRDGSPDIYLMD 268 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc---CCccCCCCCCEEEEEECCCCCccEEEEc
Confidence 45677789999998776552 22 46999999988656666655554 467899999877654 45554 67778
Q ss_pred ccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeC-CCeEEEE--EeecCCceeEEEEEeecCCcCEEEEEEcCCCcEE
Q 016982 83 QEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSG-AKTVCIC--YYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFL 159 (379)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~i~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l 159 (379)
+.+++... + ....+.-..-.|+|||+.++..+. .|.-.|| +.+... . ..+ ......-..-.|+|||+++
T Consensus 269 l~~~~~~~-L--t~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~---~-~ri-T~~~~~~~~p~~SpdG~~i 340 (425)
T COG0823 269 LDGKNLPR-L--TNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ---V-TRL-TFSGGGNSNPVWSPDGDKI 340 (425)
T ss_pred CCCCccee-c--ccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc---e-eEe-eccCCCCcCccCCCCCCEE
Confidence 87776333 2 233344447789999999888765 4554554 444444 2 233 2222223378899999999
Q ss_pred EEeeCC-Ce--EEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCC
Q 016982 160 ATTSTD-GK--CRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHN 225 (379)
Q Consensus 160 ~~~~~d-~~--i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d 225 (379)
+..+.. |. |.+.|+ ..+..+..+.. ........|.|+|+.++..+..
T Consensus 341 ~~~~~~~g~~~i~~~~~------------------~~~~~~~~lt~-~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 341 VFESSSGGQWDIDKNDL------------------ASGGKIRILTS-TYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred EEEeccCCceeeEEecc------------------CCCCcEEEccc-cccCCCCCcCCCCceEEEeccC
Confidence 887753 44 444443 22221333321 3334567788898888766543
No 321
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.77 E-value=2e-06 Score=74.61 Aligned_cols=208 Identities=16% Similarity=0.199 Sum_probs=125.2
Q ss_pred EEeccCCCceEEEEEcCCCCEEEEEe---CC-CeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeC-CCeE
Q 016982 48 HVLQKHDQIVSGIDWSVRSNRIVTVS---HD-RNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSG-AKTV 122 (379)
Q Consensus 48 ~~~~~~~~~v~~~~~~~~~~~l~~~~---~d-~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v 122 (379)
..+..-...+..-+|+|++..++..+ .. ..+.++++.+++...... ..+.-...+|+|||++|+.+.. ||..
T Consensus 186 ~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~---~~g~~~~P~fspDG~~l~f~~~rdg~~ 262 (425)
T COG0823 186 QKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN---FNGNNGAPAFSPDGSKLAFSSSRDGSP 262 (425)
T ss_pred eEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec---cCCccCCccCCCCCCEEEEEECCCCCc
Confidence 33444455677889999998766543 22 359999999987544443 3455567789999998777654 6665
Q ss_pred E--EEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC-CCeEEEEeccccccccccccCCCccCCcccceEEE
Q 016982 123 C--ICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST-DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQ 199 (379)
Q Consensus 123 ~--i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (379)
. ++|+..+. ..+ + ....+.-..-.|+|||+.++..+. .|.-.||-.. ..+.....
T Consensus 263 ~iy~~dl~~~~---~~~-L-t~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~-----------------~~g~~~~r 320 (425)
T COG0823 263 DIYLMDLDGKN---LPR-L-TNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYD-----------------LEGSQVTR 320 (425)
T ss_pred cEEEEcCCCCc---cee-c-ccCCccccCccCCCCCCEEEEEeCCCCCcceEEEC-----------------CCCCceeE
Confidence 4 44555554 222 3 333333347789999988876654 5554555431 22333333
Q ss_pred eecCCcceEEEEECCCCCEEEEEcCC-Ce--EEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEE--EeCCCeEEEE
Q 016982 200 LDLSFSWAFGVKWSPSGNTLAYVGHN-SM--IYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGV--GFDCNPMVFA 274 (379)
Q Consensus 200 ~~~~~~~v~~~~~sp~~~~l~~~~~d-~~--i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~--~~d~~~~i~~ 274 (379)
+....+.-....|+|||++++..+.. |. |.+.|+.++.. .+.+. .........|.++|+.+.. +..+.-.++.
T Consensus 321 iT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt-~~~~~e~ps~~~ng~~i~~~s~~~~~~~l~~ 398 (425)
T COG0823 321 LTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILT-STYLNESPSWAPNGRMIMFSSGQGGGSVLSL 398 (425)
T ss_pred eeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc-EEEcc-ccccCCCCCcCCCCceEEEeccCCCCceEEE
Confidence 33333323378899999999887643 44 66667666553 23333 3444556788999988773 2233455555
Q ss_pred ecCCCcEE
Q 016982 275 ADETGIWT 282 (379)
Q Consensus 275 ~~~~~~~~ 282 (379)
....+.+.
T Consensus 399 ~s~~g~~~ 406 (425)
T COG0823 399 VSLDGRVS 406 (425)
T ss_pred eeccceeE
Confidence 55544333
No 322
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.72 E-value=2.6e-05 Score=68.28 Aligned_cols=225 Identities=12% Similarity=0.047 Sum_probs=118.8
Q ss_pred CCcEEEEEecCCeEEEEEecCCceEEEEEeccCC--C--------ce-EEEEEcCCCCEEEEEeCCCeEEEEeccCCcee
Q 016982 21 DHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHD--Q--------IV-SGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWV 89 (379)
Q Consensus 21 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~--~--------~v-~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~ 89 (379)
.+..+++++.+|.+.-+|.++++ .+....... . .+ ..+.. .+..++.++.++.+..+|.++++..
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~--~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~ 143 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGK--EIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVA 143 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCc--EeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCc
Confidence 35567777788999999998873 433332111 0 00 01111 2457777888999999999999754
Q ss_pred eeEEeecCCCceeE-EEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCC-cCEEEEEEcCCCcEEEEeeCCCe
Q 016982 90 PTLVILRLNRAALC-VQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHD-SSVTSVAWHPNNVFLATTSTDGK 167 (379)
Q Consensus 90 ~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~l~~~~~d~~ 167 (379)
-.... ...+.+ ... .+..++++..++.+.-+|.++++..+....-..... ........ .+..++.++.++.
T Consensus 144 W~~~~---~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~ 216 (394)
T PRK11138 144 WQTKV---AGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGR 216 (394)
T ss_pred ccccC---CCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCE
Confidence 44432 122211 111 245677778889999999888874222111000000 00001111 1234666777888
Q ss_pred EEEEeccccccccccccCCCccCCcccceEEEeecCC-------cceEEEEECC--CCCEEEEEcCCCeEEEEECCCCCc
Q 016982 168 CRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSF-------SWAFGVKWSP--SGNTLAYVGHNSMIYFVDDVGPSP 238 (379)
Q Consensus 168 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~v~~~~~sp--~~~~l~~~~~d~~i~v~d~~~~~~ 238 (379)
+..+|.. +++.+-...... .....+.-+| .+..++.++.+|.+..+|..+++.
T Consensus 217 v~a~d~~------------------~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~ 278 (394)
T PRK11138 217 VSAVLME------------------QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQI 278 (394)
T ss_pred EEEEEcc------------------CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCE
Confidence 8888752 222221111000 0011111223 245666777899999999988875
Q ss_pred eeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEecCC
Q 016982 239 LAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADET 278 (379)
Q Consensus 239 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~ 278 (379)
..+. .. .....+.. .++.+++++.++.+..++....
T Consensus 279 ~W~~-~~--~~~~~~~~-~~~~vy~~~~~g~l~ald~~tG 314 (394)
T PRK11138 279 VWKR-EY--GSVNDFAV-DGGRIYLVDQNDRVYALDTRGG 314 (394)
T ss_pred EEee-cC--CCccCcEE-ECCEEEEEcCCCeEEEEECCCC
Confidence 4222 11 11112222 2456666777888887776543
No 323
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.72 E-value=6.4e-06 Score=72.56 Aligned_cols=147 Identities=11% Similarity=0.073 Sum_probs=100.9
Q ss_pred ceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeee
Q 016982 12 CITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPT 91 (379)
Q Consensus 12 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~ 91 (379)
.|.--+++..+++++.|+.-|.+++|+-..+.. ......+-.+.+..+..+++..++|.|+..|.|.++.++.......
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~-~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~ 113 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEM-RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL 113 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhh-hcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence 344445566789999999999999999887632 2223333445666777899888899999999999998876532222
Q ss_pred EEe----ecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCc-eeEEEEEeecCCcCEEEEEEcCCCcEEEE
Q 016982 92 LVI----LRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENN-WWVSKLIRKRHDSSVTSVAWHPNNVFLAT 161 (379)
Q Consensus 92 ~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~l~~ 161 (379)
... ..|+..|++++|++++..+++|...|.|.+-.++.... ......+ ....+.|..+... ++.+|++
T Consensus 114 ~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~i-l~~ds~IVQlD~~-q~~LLVS 186 (726)
T KOG3621|consen 114 DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEI-LSEDSEIVQLDYL-QSYLLVS 186 (726)
T ss_pred eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhcccccee-eccCcceEEeecc-cceehHh
Confidence 211 23678999999999999999999999999887776211 0012222 3455677777664 3444443
No 324
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=3.3e-06 Score=75.93 Aligned_cols=201 Identities=12% Similarity=0.089 Sum_probs=131.4
Q ss_pred EcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCc-eeEEEECCCCCEEEEEeCCC-----eEEEEEeecCCce--
Q 016982 62 WSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRA-ALCVQWSPKENKFAVGSGAK-----TVCICYYEQENNW-- 133 (379)
Q Consensus 62 ~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d~-----~v~i~~~~~~~~~-- 133 (379)
|++.+..++.|+.+|.|.+++-.- +....+ ..+... |..+-...+.++|++.+.|+ .+++|+++.....
T Consensus 31 ~~s~~~~vvigt~~G~V~~Ln~s~-~~~~~f--qa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 31 CSSSTGSVVIGTADGRVVILNSSF-QLIRGF--QAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EcCCCceEEEeeccccEEEecccc-eeeehh--eecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 677888999999999888776322 222233 344444 44443333346777777654 4899999765311
Q ss_pred -eEE---EEEe---ecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcc
Q 016982 134 -WVS---KLIR---KRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSW 206 (379)
Q Consensus 134 -~~~---~~~~---~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (379)
.+. +.+. .....++.+++.+.+-+.+|+|-.+|.|..+.- |.-. ..+....-......+
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~G-----Di~R---------Drgsr~~~~~~~~~p 173 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKG-----DILR---------DRGSRQDYSHRGKEP 173 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcC-----cchh---------ccccceeeeccCCCC
Confidence 122 1211 113567889999999899999999999998853 1110 111111112223678
Q ss_pred eEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCC
Q 016982 207 AFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETG 279 (379)
Q Consensus 207 v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~ 279 (379)
|+.+++..+++.++.......|.+|.+.+..+..+.+..++.++.+..|++...-+.++.+..+.+|+.++.+
T Consensus 174 ITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 174 ITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRG 246 (933)
T ss_pred ceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCcc
Confidence 9999999999885555566789999988655455667788889999999886554555566678888877644
No 325
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.70 E-value=4.3e-05 Score=61.08 Aligned_cols=202 Identities=15% Similarity=0.224 Sum_probs=113.4
Q ss_pred eeccCcceeEEEeCCCCc-EEEEEecCCeEEEEEecCCceEEEEE--eccCCCceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 016982 6 VHQFAQCITCHAWSPDHA-MVAFCPNNNEVHIYKLIQEKWEKLHV--LQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWN 82 (379)
Q Consensus 6 ~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~ 82 (379)
+-+-...+..++|+|+.+ ++++....+.|..++.++ +.++. +.+ .+..-.+++..++.++++.-.++.+.+++
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G---~vlr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDG---KVLRRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT-----EEEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCC---CEEEEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 445566799999999755 666677778888777653 34444 343 24568899987777777665688999998
Q ss_pred ccCCc----e--eeeEEe--e-cCCCceeEEEECCCCCEEEEEeCCCeEEEEEeec---CCceeEEEEEe----ecCCcC
Q 016982 83 QEGSE----W--VPTLVI--L-RLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQ---ENNWWVSKLIR----KRHDSS 146 (379)
Q Consensus 83 ~~~~~----~--~~~~~~--~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~---~~~~~~~~~~~----~~~~~~ 146 (379)
+.... . ...+.+ . .++..+..++|.|.++.|+++.+.....+|.++. ........... ......
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 172 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD 172 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence 84321 0 111211 1 2456789999999888888888877788888775 22111111100 123346
Q ss_pred EEEEEEcCCC-cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCC---------cceEEEEECCCC
Q 016982 147 VTSVAWHPNN-VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSF---------SWAFGVKWSPSG 216 (379)
Q Consensus 147 v~~~~~~p~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~~~sp~~ 216 (379)
+.+++++|.. ++++....+..+..+|. .++.+..+.... ...-.++|.++|
T Consensus 173 ~S~l~~~p~t~~lliLS~es~~l~~~d~-------------------~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G 233 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDESRLLLELDR-------------------QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG 233 (248)
T ss_dssp --EEEEETTTTEEEEEETTTTEEEEE-T-------------------T--EEEEEE-STTGGG-SS---SEEEEEE-TT-
T ss_pred ccceEEcCCCCeEEEEECCCCeEEEECC-------------------CCCEEEEEEeCCcccCcccccCCccEEEECCCC
Confidence 7899999965 66677777888888884 455544443222 235789999999
Q ss_pred CEEEEEcCCCeEEEE
Q 016982 217 NTLAYVGHNSMIYFV 231 (379)
Q Consensus 217 ~~l~~~~~d~~i~v~ 231 (379)
++.++ ++-+..++|
T Consensus 234 ~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 234 NLYIV-SEPNLFYRF 247 (248)
T ss_dssp -EEEE-ETTTEEEEE
T ss_pred CEEEE-cCCceEEEe
Confidence 76665 455555554
No 326
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.70 E-value=4.3e-05 Score=66.99 Aligned_cols=228 Identities=11% Similarity=0.061 Sum_probs=122.5
Q ss_pred CcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCce
Q 016982 22 HAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAA 101 (379)
Q Consensus 22 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v 101 (379)
+..++.++.+|.++-+|.++++ .+...........+.... +..++.+..++.+.-+|.++++..-...........
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~--~~W~~~~~~~~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~ 195 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGE--VAWQTKVAGEALSRPVVS--DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTL 195 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCC--CcccccCCCceecCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccc
Confidence 4566677788999999998873 333333222111111222 446777788899999999999855444321100000
Q ss_pred eEEEECC--CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecC-Cc---CEEEEEEcC--CCcEEEEeeCCCeEEEEec
Q 016982 102 LCVQWSP--KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRH-DS---SVTSVAWHP--NNVFLATTSTDGKCRVFST 173 (379)
Q Consensus 102 ~~~~~~~--~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~-~~---~v~~~~~~p--~~~~l~~~~~d~~i~v~d~ 173 (379)
. ..-+| .+..++.++.++.+..+|..+++..+..... ... .. ....+.-+| .+..++.++.+|.+..+|.
T Consensus 196 ~-~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~-~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~ 273 (394)
T PRK11138 196 R-GESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRIS-QPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDL 273 (394)
T ss_pred c-CCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccc-cCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEEC
Confidence 0 00112 1345677778898988888777642222111 000 00 011111122 2445666778899988886
Q ss_pred cccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeE
Q 016982 174 FIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDV 253 (379)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~ 253 (379)
.+++.+-.... .....+.. .+..++.++.+|.+..+|..+++.+...-........+.
T Consensus 274 ------------------~tG~~~W~~~~--~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp 331 (394)
T PRK11138 274 ------------------RSGQIVWKREY--GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAP 331 (394)
T ss_pred ------------------CCCCEEEeecC--CCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCC
Confidence 44544333221 11111222 456777788899999999988764322211111112222
Q ss_pred EEecCCcEEEEEeCCCeEEEEecCC
Q 016982 254 LFVSEKMVIGVGFDCNPMVFAADET 278 (379)
Q Consensus 254 ~~s~~~~~l~~~~d~~~~i~~~~~~ 278 (379)
.. -++.+++...++.+..++....
T Consensus 332 ~v-~~g~l~v~~~~G~l~~ld~~tG 355 (394)
T PRK11138 332 VL-YNGYLVVGDSEGYLHWINREDG 355 (394)
T ss_pred EE-ECCEEEEEeCCCEEEEEECCCC
Confidence 22 2677777888888887776543
No 327
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.68 E-value=5.1e-09 Score=90.26 Aligned_cols=203 Identities=13% Similarity=0.194 Sum_probs=132.4
Q ss_pred cceeEEEeCCCC--cEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCC-CEEEEEe----CCCeEEEEec
Q 016982 11 QCITCHAWSPDH--AMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRS-NRIVTVS----HDRNSYVWNQ 83 (379)
Q Consensus 11 ~~i~~~~~s~~~--~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~----~d~~i~vw~~ 83 (379)
..+.|++++-+. ..+++|..+|.|-+-........-....++|..++++++|++-. +.||.|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 456777776533 47889999999999887754323234456788899999999854 5666552 3567999999
Q ss_pred cCC--ceeeeEEeec-CCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcC-CCcEE
Q 016982 84 EGS--EWVPTLVILR-LNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHP-NNVFL 159 (379)
Q Consensus 84 ~~~--~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l 159 (379)
.++ .+.....+.. ......+++|-.+.+.+.+|...+.+.++|++.... ... .-....+..+...| .++++
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~----~~~-svnTk~vqG~tVdp~~~nY~ 211 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD----SVS-SVNTKYVQGITVDPFSPNYF 211 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh----hhh-hhhhhhcccceecCCCCCce
Confidence 887 2111111122 334566888988889999999999999999885431 111 22334566778888 66777
Q ss_pred EEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecC----CcceEEEEECCC--CCEEEEEcCCCeEEEEEC
Q 016982 160 ATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS----FSWAFGVKWSPS--GNTLAYVGHNSMIYFVDD 233 (379)
Q Consensus 160 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~sp~--~~~l~~~~~d~~i~v~d~ 233 (379)
++-. ||.|.+||.. .+...++..+... ...+..++|.|. |...+.....++|++||+
T Consensus 212 cs~~-dg~iAiwD~~----------------rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi 274 (783)
T KOG1008|consen 212 CSNS-DGDIAIWDTY----------------RNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDI 274 (783)
T ss_pred eccc-cCceeeccch----------------hhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecc
Confidence 7655 9999999931 1222222222111 234889999994 443333445689999987
Q ss_pred CC
Q 016982 234 VG 235 (379)
Q Consensus 234 ~~ 235 (379)
..
T Consensus 275 ~~ 276 (783)
T KOG1008|consen 275 CV 276 (783)
T ss_pred cc
Confidence 53
No 328
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.67 E-value=1.7e-07 Score=75.06 Aligned_cols=141 Identities=9% Similarity=0.055 Sum_probs=102.7
Q ss_pred EEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCC----ceeeeEEeecCCCce
Q 016982 26 AFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGS----EWVPTLVILRLNRAA 101 (379)
Q Consensus 26 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~----~~~~~~~~~~~~~~v 101 (379)
++.+.+..|-+-+++++ ..+.|. ..+.|.++.|...++++..|..+|.|...|++.+ .+.... .-|...|
T Consensus 228 fs~G~sqqv~L~nvetg---~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r--lyh~Ssv 301 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETG---HQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR--LYHDSSV 301 (425)
T ss_pred ecccccceeEEEEeecc---cccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE--EEcCcch
Confidence 33445678888899886 334444 4668999999988999999999999999999765 221211 3488899
Q ss_pred eEEEECC-CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEE--EEEcCCCcEEEEeeCCCeEEEEec
Q 016982 102 LCVQWSP-KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTS--VAWHPNNVFLATTSTDGKCRVFST 173 (379)
Q Consensus 102 ~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~p~~~~l~~~~~d~~i~v~d~ 173 (379)
+++..-. ++.+|++.+.+|.|++||++.-+...-.... .+|-..-.- +-..+....+++++.|...+||.+
T Consensus 302 tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qY-eGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl 375 (425)
T KOG2695|consen 302 TSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQY-EGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSL 375 (425)
T ss_pred hhhhhhccccceEeeccCcCceeEeeehhhhcccceeee-ecccccccccccccccccceEEEccCeeEEEEEec
Confidence 9988776 7889999999999999999876632223333 555433222 233455678888999999999997
No 329
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.64 E-value=1.3e-06 Score=78.45 Aligned_cols=113 Identities=13% Similarity=0.146 Sum_probs=86.3
Q ss_pred eeEEEeCCCCcEEEEEe----cCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCce
Q 016982 13 ITCHAWSPDHAMVAFCP----NNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEW 88 (379)
Q Consensus 13 i~~~~~s~~~~~l~~~~----~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~ 88 (379)
-+-.+|+|...+||+++ +.|.|.||-- ++ ++.+... .+-.+++++|+|..-.|+.+-.-|.+.+|...+.+.
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfad-tG--EPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ 93 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFAD-TG--EPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET 93 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEec-CC--CCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCcee
Confidence 34467999999999885 3688999853 33 2222111 122356799999988889988889999999887764
Q ss_pred eeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCC
Q 016982 89 VPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQEN 131 (379)
Q Consensus 89 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~ 131 (379)
... ...|+.++..+.||++|+.++++..-|.+.+|.++...
T Consensus 94 htv--~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g 134 (1416)
T KOG3617|consen 94 HTV--VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIG 134 (1416)
T ss_pred eee--ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeecc
Confidence 333 35799999999999999999999999999999887543
No 330
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.61 E-value=4.9e-05 Score=60.75 Aligned_cols=207 Identities=10% Similarity=0.094 Sum_probs=114.7
Q ss_pred EEeccCCCceEEEEEcCCCCE-EEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEE
Q 016982 48 HVLQKHDQIVSGIDWSVRSNR-IVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICY 126 (379)
Q Consensus 48 ~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~ 126 (379)
..+.+-...+..++|+|+.+. +++....+.|.-++.+ ++.++.+.+.+ .+....+++..++.++++--.++.+.+++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 455666667999999998664 5556677788888864 67677766543 46788999987777666655689999988
Q ss_pred eecCCc---eeEEEEEe----ecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEE-
Q 016982 127 YEQENN---WWVSKLIR----KRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQIL- 198 (379)
Q Consensus 127 ~~~~~~---~~~~~~~~----~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~- 198 (379)
+..... ....+.+. ..+...+..++|+|.++.|+.+-+..-..+|.+.... ....+.
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~---------------~~~~~~~ 157 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFP---------------GGFDLFV 157 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT----------------SS--EE
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcccc---------------Cccceee
Confidence 844321 00111121 1345668999999988777777776667777653100 000000
Q ss_pred -E------eecCCcceEEEEECCC-CCEEEEEcCCCeEEEEECCCCCceeeeeeeec---------CCeeeEEEecCCcE
Q 016982 199 -Q------LDLSFSWAFGVKWSPS-GNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRD---------LPLRDVLFVSEKMV 261 (379)
Q Consensus 199 -~------~~~~~~~v~~~~~sp~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~---------~~i~~~~~s~~~~~ 261 (379)
. .......+.+++++|. +.+++.+.....|..+|... + .+..+.-.. ...-.|+|.++|++
T Consensus 158 ~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G-~-~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~L 235 (248)
T PF06977_consen 158 SDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQG-R-VVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNL 235 (248)
T ss_dssp EE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT----EEEEEE-STTGGG-SS---SEEEEEE-TT--E
T ss_pred ccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCC-C-EEEEEEeCCcccCcccccCCccEEEECCCCCE
Confidence 0 1112335788999994 66777778888999999443 3 223332111 23567999999998
Q ss_pred EEEEeCCCeEEE
Q 016982 262 IGVGFDCNPMVF 273 (379)
Q Consensus 262 l~~~~d~~~~i~ 273 (379)
.+++.-+..++|
T Consensus 236 YIvsEpNlfy~f 247 (248)
T PF06977_consen 236 YIVSEPNLFYRF 247 (248)
T ss_dssp EEEETTTEEEEE
T ss_pred EEEcCCceEEEe
Confidence 888866544443
No 331
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.61 E-value=8.2e-05 Score=64.97 Aligned_cols=224 Identities=13% Similarity=0.148 Sum_probs=115.7
Q ss_pred EEeCCCCcEEEEEecC-----------CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982 16 HAWSPDHAMVAFCPNN-----------NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE 84 (379)
Q Consensus 16 ~~~s~~~~~l~~~~~d-----------g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~ 84 (379)
++.+|.|..+|....+ ..|.||+.... ++..+.-..+.|.++.|+.+. .|+....||.++++|+.
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~---ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGK---LLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCC---EeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC
Confidence 4566777777766443 15888888764 444444334789999998865 55566789999999987
Q ss_pred CCceeeeEEee--cCCCce-----eEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEe--ec-----CCc-CEEE
Q 016982 85 GSEWVPTLVIL--RLNRAA-----LCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIR--KR-----HDS-SVTS 149 (379)
Q Consensus 85 ~~~~~~~~~~~--~~~~~v-----~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~--~~-----~~~-~v~~ 149 (379)
... .+... .....| ....+..+| +++-..++.+.+. .........+.+. .. +.. ....
T Consensus 110 G~~---~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v--~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 182 (410)
T PF04841_consen 110 GEF---QFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVV--NNIDEPVKLRRLPEIPGLWTKFHWWPSWTV 182 (410)
T ss_pred Cce---eechhhhccccCcccccccccccCCCC--EEEECCCCeEEEE--eCccccchhhccccCCCccccccccccccc
Confidence 443 22111 011122 222333344 3333344555443 2221100011110 00 000 0000
Q ss_pred -EEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeE
Q 016982 150 -VAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMI 228 (379)
Q Consensus 150 -~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i 228 (379)
..++.+....+....++.+.+.+- ...+. +. ..+++..++.||+|+++|.-..+|.+
T Consensus 183 i~~l~~~~~~~i~~~~g~~i~~i~~------------------~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l 240 (410)
T PF04841_consen 183 IPLLSSDRVVEILLANGETIYIIDE------------------NSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNL 240 (410)
T ss_pred ceEeecCcceEEEEecCCEEEEEEc------------------ccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCE
Confidence 223334444444444555554432 11011 21 24579999999999999999999999
Q ss_pred EEEECCCCCceeeeeeee-cCCeeeEEEecCCcEEEEEeCCCeEEEE
Q 016982 229 YFVDDVGPSPLAQNVAFR-DLPLRDVLFVSEKMVIGVGFDCNPMVFA 274 (379)
Q Consensus 229 ~v~d~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~d~~~~i~~ 274 (379)
.+....-.+ ....+... ......+.|.-+...++ .....+.+..
T Consensus 241 ~v~ssDf~~-~~~e~~~~~~~~p~~~~WCG~dav~l-~~~~~l~lvg 285 (410)
T PF04841_consen 241 WVVSSDFSE-KLCEFDTDSKSPPKQMAWCGNDAVVL-SWEDELLLVG 285 (410)
T ss_pred EEEECcccc-eeEEeecCcCCCCcEEEEECCCcEEE-EeCCEEEEEC
Confidence 988754333 22333322 34567788876544332 2233444443
No 332
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.60 E-value=1.6e-08 Score=87.26 Aligned_cols=202 Identities=12% Similarity=0.074 Sum_probs=129.7
Q ss_pred CCceEEEEEcCCC--CEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECC-CCCEEEEEeC----CCeEEEEE
Q 016982 54 DQIVSGIDWSVRS--NRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSP-KENKFAVGSG----AKTVCICY 126 (379)
Q Consensus 54 ~~~v~~~~~~~~~--~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~----d~~v~i~~ 126 (379)
...+.|++++-+. ..++.|..+|.|.+-.+....-.......++..++++++|++ |.+.||.|-. |-.+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 3456777776544 467888899999999887654332233356778999999998 6677777743 66799999
Q ss_pred eecCCceeEEEE-EeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCc
Q 016982 127 YEQENNWWVSKL-IRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFS 205 (379)
Q Consensus 127 ~~~~~~~~~~~~-~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (379)
+.+.-..+.... +..+.......++|..+.+++++|.....+.++|++ ....... .....
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlR-----------------qs~~~~~--svnTk 196 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLR-----------------QSLDSVS--SVNTK 196 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhh-----------------hhhhhhh--hhhhh
Confidence 988721111111 102233455688998888999999999999999872 1111111 12234
Q ss_pred ceEEEEECC-CCCEEEEEcCCCeEEEEE-CCCCCceeeeeeeecC----CeeeEEEecC--CcEEEEE-eCCCeEEEEe
Q 016982 206 WAFGVKWSP-SGNTLAYVGHNSMIYFVD-DVGPSPLAQNVAFRDL----PLRDVLFVSE--KMVIGVG-FDCNPMVFAA 275 (379)
Q Consensus 206 ~v~~~~~sp-~~~~l~~~~~d~~i~v~d-~~~~~~~~~~~~~~~~----~i~~~~~s~~--~~~l~~~-~d~~~~i~~~ 275 (379)
.+..+..+| .+.|+++.. ||.|.+|| .++-+.+++.+..... .+..++|+|. |.+.+.. ..+.|+++..
T Consensus 197 ~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi 274 (783)
T KOG1008|consen 197 YVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDI 274 (783)
T ss_pred hcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecc
Confidence 577788899 788887654 99999999 4443333333332222 4889999995 3333333 3345555554
No 333
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.56 E-value=0.00035 Score=60.21 Aligned_cols=95 Identities=22% Similarity=0.265 Sum_probs=62.7
Q ss_pred CCCCcEEEEEe---------cCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCcee
Q 016982 19 SPDHAMVAFCP---------NNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWV 89 (379)
Q Consensus 19 s~~~~~l~~~~---------~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~ 89 (379)
|||+++++... ..+.+.|||+.+++ ...+......+....|+|+|+.++... ++.|.+++..++...
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~---~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~ 76 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGE---ITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET 76 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTE---EEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCc---eEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeE
Confidence 68898887742 24678999999973 333333356788999999999998876 578999998777432
Q ss_pred eeEEeecC----------------CCceeEEEECCCCCEEEEEeC
Q 016982 90 PTLVILRL----------------NRAALCVQWSPKENKFAVGSG 118 (379)
Q Consensus 90 ~~~~~~~~----------------~~~v~~~~~~~~~~~l~~~~~ 118 (379)
+ +...+. -+.-..+-||||+++|+....
T Consensus 77 ~-lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 77 Q-LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp E-SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred E-eccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 2 222220 112357889999999887653
No 334
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.56 E-value=1.2e-06 Score=78.53 Aligned_cols=72 Identities=19% Similarity=0.356 Sum_probs=63.0
Q ss_pred ceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccC
Q 016982 12 CITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEG 85 (379)
Q Consensus 12 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~ 85 (379)
.+++++|+|..-.|+.|-.-|.+.+|...+. +.......|..+|..+.|||+|..++++..-|.+.+|....
T Consensus 61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~--e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTT--ETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred ehhhhccChHHHHHhhccccceeEEEecCCc--eeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 3567999998888999988999999998876 55556677999999999999999999999999999998763
No 335
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.56 E-value=5.5e-05 Score=61.34 Aligned_cols=191 Identities=14% Similarity=0.143 Sum_probs=109.4
Q ss_pred CCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecC-C-
Q 016982 21 DHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRL-N- 98 (379)
Q Consensus 21 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~-~- 98 (379)
++..+++++.++.++.||..++ +.+..... ...+.... ...+..++.++.++.+..+|..+++..-....... .
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG--~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~ 110 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTG--KVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA 110 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTS--EEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC
T ss_pred eCCEEEEEcCCCEEEEEECCCC--CEEEEeec-ccccccee-eecccccccccceeeeEecccCCcceeeeecccccccc
Confidence 5666777788999999999888 44444443 22211111 22355677777888999999999986555321111 1
Q ss_pred CceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecC-CcC------EEEEEEcCCCcEEEEeeCCCe-EEE
Q 016982 99 RAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRH-DSS------VTSVAWHPNNVFLATTSTDGK-CRV 170 (379)
Q Consensus 99 ~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~-~~~------v~~~~~~p~~~~l~~~~~d~~-i~v 170 (379)
...........+..++++..++.|..+|.++++..+....- ... ... +..-....++ .+..++.++. +.+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~ 188 (238)
T PF13360_consen 111 GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVG-EPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV 188 (238)
T ss_dssp STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESS-TT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE
T ss_pred ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecC-CCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE
Confidence 11122223334778888888999999998888732111110 101 011 1122222244 5666666665 444
Q ss_pred EeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCce
Q 016982 171 FSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPL 239 (379)
Q Consensus 171 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~ 239 (379)
|+ .+++.+-... ...+..+ ..+++..|+.++.++.|..||+.+++..
T Consensus 189 -d~------------------~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 189 -DL------------------ATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp -ET------------------TTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred -EC------------------CCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence 86 5555443222 2222221 3456777887779999999999998643
No 336
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.53 E-value=2.8e-05 Score=68.69 Aligned_cols=118 Identities=18% Similarity=0.144 Sum_probs=88.5
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCcee
Q 016982 55 QIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWW 134 (379)
Q Consensus 55 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~ 134 (379)
..|.--+++..+++|+.|+.-|.+++|+-..++... +......+.+..+..+++..++|.|+..|.|.++.++...+..
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~-~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRK-LKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhc-ccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence 344444556678899999999999999988775322 2212244566777889999999999999999999887754321
Q ss_pred E--EEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEec
Q 016982 135 V--SKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFST 173 (379)
Q Consensus 135 ~--~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~ 173 (379)
. .......|...|++++|++++..+.+|...|.|..-.+
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L 153 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTEL 153 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEe
Confidence 1 12222457889999999999999999999999998876
No 337
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.52 E-value=8.2e-05 Score=65.07 Aligned_cols=229 Identities=15% Similarity=0.215 Sum_probs=110.5
Q ss_pred cCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEE-eccCCc
Q 016982 9 FAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVW-NQEGSE 87 (379)
Q Consensus 9 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw-~~~~~~ 87 (379)
..-.+..+.++|+|++++++ .+|...||....- ..... +.-....|.+.+ .+|+-..+++|.++ +++...
T Consensus 31 ~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~--r~k~~-----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~ 101 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAW--RNKAF-----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEV 101 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTT--EEEEE-----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-T
T ss_pred CCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCC--ccccc-----CceeEEEEecCc-cEEEEECCCeEEEEEcCcccc
Confidence 44568899999999999985 6788889884432 22221 234578899854 56776778889996 443221
Q ss_pred eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCe
Q 016982 88 WVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGK 167 (379)
Q Consensus 88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~ 167 (379)
...+.. ...+..+-. |..|+..+.+ .|.+||+.+.+ +.+.+ .-.+|..+.|++++.+++..+.+ .
T Consensus 102 -~k~i~~---~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~---~i~~i---~v~~vk~V~Ws~~g~~val~t~~-~ 166 (443)
T PF04053_consen 102 -VKSIKL---PFSVEKIFG---GNLLGVKSSD-FICFYDWETGK---LIRRI---DVSAVKYVIWSDDGELVALVTKD-S 166 (443)
T ss_dssp -T--------SS-EEEEE----SSSEEEEETT-EEEEE-TTT-----EEEEE---SS-E-EEEEE-TTSSEEEEE-S--S
T ss_pred -ceEEcC---CcccceEEc---CcEEEEECCC-CEEEEEhhHcc---eeeEE---ecCCCcEEEEECCCCEEEEEeCC-e
Confidence 112221 223344332 8878777654 89999999887 45555 22348999999999999988755 5
Q ss_pred EEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeec
Q 016982 168 CRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRD 247 (379)
Q Consensus 168 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 247 (379)
+.+++........ .+. .--......+..-...|.+..|..+ .++..... .++.+ ..+. ...+..-.
T Consensus 167 i~il~~~~~~~~~-~~~------~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkYl--~~Ge--~~~i~~ld 232 (443)
T PF04053_consen 167 IYILKYNLEAVAA-IPE------EGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKYL--VNGE--TGIIAHLD 232 (443)
T ss_dssp EEEEEE-HHHHHH-BTT------TB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEEE--ETTE--EEEEEE-S
T ss_pred EEEEEecchhccc-ccc------cCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEEE--EcCC--cceEEEcC
Confidence 7777642110000 000 0000122222222456888888866 44444444 66653 3332 12222223
Q ss_pred CCeeeEEEecC-CcEEEEEeCCCeEEEEe
Q 016982 248 LPLRDVLFVSE-KMVIGVGFDCNPMVFAA 275 (379)
Q Consensus 248 ~~i~~~~~s~~-~~~l~~~~d~~~~i~~~ 275 (379)
.++.=+...++ +++++.-.+..+..+..
T Consensus 233 ~~~yllgy~~~~~~ly~~Dr~~~v~~~~l 261 (443)
T PF04053_consen 233 KPLYLLGYLPKENRLYLIDRDGNVISYEL 261 (443)
T ss_dssp S--EEEEEETTTTEEEEE-TT--EEEEE-
T ss_pred CceEEEEEEccCCEEEEEECCCCEEEEEE
Confidence 45555555553 33333445555555543
No 338
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.50 E-value=0.00027 Score=55.15 Aligned_cols=98 Identities=11% Similarity=0.022 Sum_probs=61.3
Q ss_pred CcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCce
Q 016982 22 HAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAA 101 (379)
Q Consensus 22 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v 101 (379)
|++++.|+..|.+++.+.+++ .....+.....-=......+++..|..++.|++.+..|..+..++-.. +-..+--
T Consensus 63 gdfVV~GCy~g~lYfl~~~tG--s~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyks--kcgG~~f 138 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTG--SQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKS--KCGGGTF 138 (354)
T ss_pred CCEEEEEEccCcEEEEEecch--hheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEec--ccCCcee
Confidence 567888999999999999987 344444332211122345678899999999999999999888754443 2222223
Q ss_pred eEEEECC-CCCEEEEEeCCCeEEE
Q 016982 102 LCVQWSP-KENKFAVGSGAKTVCI 124 (379)
Q Consensus 102 ~~~~~~~-~~~~l~~~~~d~~v~i 124 (379)
.+-+..| ++. |..+...|.+.-
T Consensus 139 ~sP~i~~g~~s-ly~a~t~G~vla 161 (354)
T KOG4649|consen 139 VSPVIAPGDGS-LYAAITAGAVLA 161 (354)
T ss_pred ccceecCCCce-EEEEeccceEEE
Confidence 3445555 444 333444455433
No 339
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.49 E-value=0.00028 Score=63.07 Aligned_cols=169 Identities=10% Similarity=-0.004 Sum_probs=101.0
Q ss_pred CeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCC----CeEEEEEeecCCceeEEEEEeecCCcCEEEEE
Q 016982 76 RNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGA----KTVCICYYEQENNWWVSKLIRKRHDSSVTSVA 151 (379)
Q Consensus 76 ~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~ 151 (379)
+.+.+.|.++.+....+.. .+....+.++|+|+++++.+.+ ..+...+..... ....+ ....+ .+
T Consensus 215 ~~vSvID~etmeV~~qV~V---dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d---~~vvf---ni~~i--ea 283 (635)
T PRK02888 215 SLFTAVDAETMEVAWQVMV---DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD---WVVVF---NIARI--EE 283 (635)
T ss_pred EEEEEEECccceEEEEEEe---CCCcccceECCCCCEEEEeccCcccCcceeeeccccCc---eEEEE---chHHH--HH
Confidence 4566777776665444433 3355678899999999888632 122222211111 00111 00000 13
Q ss_pred EcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcc-----cceEEEeecCCcceEEEEECCCCCEEEEEc-CC
Q 016982 152 WHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKF-----GEQILQLDLSFSWAFGVKWSPSGNTLAYVG-HN 225 (379)
Q Consensus 152 ~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d 225 (379)
+.++|++... .++.|.+.|. .+ .+.+..+.. ......++++|||+++++++ .+
T Consensus 284 ~vkdGK~~~V--~gn~V~VID~------------------~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS 342 (635)
T PRK02888 284 AVKAGKFKTI--GGSKVPVVDG------------------RKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLS 342 (635)
T ss_pred hhhCCCEEEE--CCCEEEEEEC------------------CccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCC
Confidence 3456776655 3678999996 33 234444443 45578999999999988766 58
Q ss_pred CeEEEEECCCCCc-----------eeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecC
Q 016982 226 SMIYFVDDVGPSP-----------LAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADE 277 (379)
Q Consensus 226 ~~i~v~d~~~~~~-----------~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~ 277 (379)
.++.|+|+.+.+. +...... +......+|.++|...+ .--|..+..|+...
T Consensus 343 ~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 343 PTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 8999999887543 2223322 33445788999887555 45677888898664
No 340
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.47 E-value=0.0005 Score=56.80 Aligned_cols=177 Identities=15% Similarity=0.094 Sum_probs=104.4
Q ss_pred CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEe----------CCCeEEEEeccCCceeeeEEeecC-C--
Q 016982 32 NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVS----------HDRNSYVWNQEGSEWVPTLVILRL-N-- 98 (379)
Q Consensus 32 g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~vw~~~~~~~~~~~~~~~~-~-- 98 (379)
+.++++|.+++ +.+-.+..- -.-.+..+|+++.+++++ ..-.|.+||..+-.....+.+... .
T Consensus 17 ~rv~viD~d~~--k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~ 92 (342)
T PF06433_consen 17 SRVYVIDADSG--KLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ 92 (342)
T ss_dssp EEEEEEETTTT--EEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--
T ss_pred ceEEEEECCCC--cEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe
Confidence 47899998887 455444432 233467899999888754 233599999999887776665432 1
Q ss_pred --CceeEEEECCCCCEEEEEeC--CCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCC-CcEEEEeeCCCeEEEEec
Q 016982 99 --RAALCVQWSPKENKFAVGSG--AKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPN-NVFLATTSTDGKCRVFST 173 (379)
Q Consensus 99 --~~v~~~~~~~~~~~l~~~~~--d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~d~~i~v~d~ 173 (379)
.....++++.|++++++... .-+|.|.|+..++ ....+ .-.+ +..+ -|. ++.|.+-+.||.+.-..+
T Consensus 93 ~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~k---vv~ei--~~PG-C~~i--yP~~~~~F~~lC~DGsl~~v~L 164 (342)
T PF06433_consen 93 VVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKK---VVGEI--DTPG-CWLI--YPSGNRGFSMLCGDGSLLTVTL 164 (342)
T ss_dssp BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTE---EEEEE--EGTS-EEEE--EEEETTEEEEEETTSCEEEEEE
T ss_pred ecccccceEEccCCcEEEEEccCCCCeEEEEECCCCc---eeeee--cCCC-EEEE--EecCCCceEEEecCCceEEEEE
Confidence 12234577888887777543 4567787777766 34443 1222 2222 232 245778888999888877
Q ss_pred cccccccccccCCCccCCcccceEE----EeecCCcc-eEEEEECCCCCEEEEEcCCCeEEEEECCCCC
Q 016982 174 FIKGVDIKEKKEGTSSDTKFGEQIL----QLDLSFSW-AFGVKWSPSGNTLAYVGHNSMIYFVDDVGPS 237 (379)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~ 237 (379)
. ..++... .|.....+ +..-++...+..++..+.+|.|+-.|+....
T Consensus 165 d-----------------~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~ 216 (342)
T PF06433_consen 165 D-----------------ADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS 216 (342)
T ss_dssp T-----------------STSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS
T ss_pred C-----------------CCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc
Confidence 3 2232221 12222222 2344555556666667899999999987764
No 341
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=1.3e-05 Score=65.95 Aligned_cols=74 Identities=14% Similarity=0.123 Sum_probs=60.7
Q ss_pred ecCCCceeEEEECCCCC-EEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCC-cEEEEeeCCCeEEEEe
Q 016982 95 LRLNRAALCVQWSPKEN-KFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNN-VFLATTSTDGKCRVFS 172 (379)
Q Consensus 95 ~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~i~v~d 172 (379)
..+...|.+++|+|..+ ++..++.+..|+|.|+++.. +...+ ..+ ..+++++|.-+. +++..|..+|.|.|||
T Consensus 190 p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~---~vssy-~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD 264 (463)
T KOG1645|consen 190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC---VVSSY-IAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYD 264 (463)
T ss_pred cccchhhhhhccCccccceeeeeccCceEEEEecccce---eeehe-ecc-CCceeeeeccCCcceeEEeccCceEEEEE
Confidence 55678899999999766 78889999999999999876 34443 444 789999999876 6777788899999999
Q ss_pred c
Q 016982 173 T 173 (379)
Q Consensus 173 ~ 173 (379)
+
T Consensus 265 ~ 265 (463)
T KOG1645|consen 265 M 265 (463)
T ss_pred c
Confidence 7
No 342
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.44 E-value=0.0005 Score=61.94 Aligned_cols=109 Identities=10% Similarity=0.032 Sum_probs=60.6
Q ss_pred CcEEEEEecCCeEEEEEecCCceEEEEEeccCCC------ceE--EEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEE
Q 016982 22 HAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQ------IVS--GIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLV 93 (379)
Q Consensus 22 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~------~v~--~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~ 93 (379)
+..+.+++.++.|+-+|..++ +.+..+..... .+. .+... ++..++.++.++.|.-+|.++++.+-...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG--~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~ 137 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATG--KVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFG 137 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCC--hhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeec
Confidence 345666777899999999887 33333322111 000 11111 22578888889999999999998655543
Q ss_pred eecCCCceeEEEECC--CCCEEEEEe---------CCCeEEEEEeecCCce
Q 016982 94 ILRLNRAALCVQWSP--KENKFAVGS---------GAKTVCICYYEQENNW 133 (379)
Q Consensus 94 ~~~~~~~v~~~~~~~--~~~~l~~~~---------~d~~v~i~~~~~~~~~ 133 (379)
.......-..+.-+| .+..+++++ .++.+.-+|..+++..
T Consensus 138 ~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 138 NNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 322110001111122 124455554 3577888888877743
No 343
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.41 E-value=0.00022 Score=62.39 Aligned_cols=178 Identities=17% Similarity=0.179 Sum_probs=96.3
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEE-EeecCC
Q 016982 53 HDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCIC-YYEQEN 131 (379)
Q Consensus 53 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~-~~~~~~ 131 (379)
.......+.++|+|++++.++ ||.-.++.....+. . ..+......|.+.+ .+|+-.....|.++ +++...
T Consensus 31 ~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~--k-----~~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~ 101 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRN--K-----AFGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEV 101 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEE--E-----EEEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-T
T ss_pred CCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcc--c-----ccCceeEEEEecCc-cEEEEECCCeEEEEEcCcccc
Confidence 444578999999999998854 67788887443331 1 12455778899854 56776668889885 333222
Q ss_pred ceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEE
Q 016982 132 NWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVK 211 (379)
Q Consensus 132 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 211 (379)
.+.+ .....+..+-. |.+|...+.+ .|.+||. .+++.+..+... +|..+.
T Consensus 102 ----~k~i--~~~~~~~~If~---G~LL~~~~~~-~i~~yDw------------------~~~~~i~~i~v~--~vk~V~ 151 (443)
T PF04053_consen 102 ----VKSI--KLPFSVEKIFG---GNLLGVKSSD-FICFYDW------------------ETGKLIRRIDVS--AVKYVI 151 (443)
T ss_dssp ----T-------SS-EEEEE----SSSEEEEETT-EEEEE-T------------------TT--EEEEESS---E-EEEE
T ss_pred ----ceEE--cCCcccceEEc---CcEEEEECCC-CEEEEEh------------------hHcceeeEEecC--CCcEEE
Confidence 1122 11122344322 7777776544 8999996 778888888643 389999
Q ss_pred ECCCCCEEEEEcCCCeEEEEECCCC---------C-ceeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEE
Q 016982 212 WSPSGNTLAYVGHNSMIYFVDDVGP---------S-PLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMV 272 (379)
Q Consensus 212 ~sp~~~~l~~~~~d~~i~v~d~~~~---------~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i 272 (379)
|+++|.+++..+.+ .+.+++.... - .....+..-...|.+.+|..+ -++.+... .+..
T Consensus 152 Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~~-~lkY 219 (443)
T PF04053_consen 152 WSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTSN-HLKY 219 (443)
T ss_dssp E-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-TT-EEEE
T ss_pred EECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcCC-eEEE
Confidence 99999999988754 6777764332 0 122333333567889999776 33334443 5554
No 344
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.40 E-value=0.00049 Score=53.77 Aligned_cols=141 Identities=10% Similarity=0.066 Sum_probs=90.8
Q ss_pred CEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcC
Q 016982 67 NRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSS 146 (379)
Q Consensus 67 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~ 146 (379)
.+++.|+..+.+.--|..+++.+-.... ..++.+-+.- -|++++.|+..|.+++.+.+++...+..... . .-.
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~il---g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~-~--~vk 96 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAIL---GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL-E--TVK 96 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhh---CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeeh-h--hhc
Confidence 5677788888888888888864433221 2233222211 3778999999999999999998643322222 1 111
Q ss_pred EEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECC-CCCEEEEEcCC
Q 016982 147 VTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSP-SGNTLAYVGHN 225 (379)
Q Consensus 147 v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d 225 (379)
......+++..+..|+.|++.+..|. ++..++...+...+...+.+..| ++. |..+...
T Consensus 97 -~~a~~d~~~glIycgshd~~~yalD~------------------~~~~cVykskcgG~~f~sP~i~~g~~s-ly~a~t~ 156 (354)
T KOG4649|consen 97 -VRAQCDFDGGLIYCGSHDGNFYALDP------------------KTYGCVYKSKCGGGTFVSPVIAPGDGS-LYAAITA 156 (354)
T ss_pred -cceEEcCCCceEEEecCCCcEEEecc------------------cccceEEecccCCceeccceecCCCce-EEEEecc
Confidence 22345678999999999999999996 66777777665555555667777 444 4444455
Q ss_pred CeEEEEECC
Q 016982 226 SMIYFVDDV 234 (379)
Q Consensus 226 ~~i~v~d~~ 234 (379)
|.+.--..+
T Consensus 157 G~vlavt~~ 165 (354)
T KOG4649|consen 157 GAVLAVTKN 165 (354)
T ss_pred ceEEEEccC
Confidence 555444433
No 345
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.33 E-value=0.0002 Score=63.92 Aligned_cols=198 Identities=9% Similarity=-0.003 Sum_probs=110.8
Q ss_pred eCCCCcEEEE-EecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC----CeEEEEeccCCceeeeE
Q 016982 18 WSPDHAMVAF-CPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD----RNSYVWNQEGSEWVPTL 92 (379)
Q Consensus 18 ~s~~~~~l~~-~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~vw~~~~~~~~~~~ 92 (379)
++|||+.+.. .-..+.+.+.|.++. +...++.-- +....++++|+|+++++.+.+ .++..-+.........+
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etm--eV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvf 276 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETM--EVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVF 276 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccc--eEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEE
Confidence 4456654432 223456667776654 444444332 244678899999998777632 22333333222211111
Q ss_pred EeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecC--CceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC-CCeEE
Q 016982 93 VILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQE--NNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST-DGKCR 169 (379)
Q Consensus 93 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d~~i~ 169 (379)
.. ..+ -.+.++|++..++ ++.|.+.|..+. ....+...+ .-......+.++|||+++++++. +.++.
T Consensus 277 ni----~~i--ea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yI--PVGKsPHGV~vSPDGkylyVanklS~tVS 346 (635)
T PRK02888 277 NI----ARI--EEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYV--PVPKNPHGVNTSPDGKYFIANGKLSPTVT 346 (635)
T ss_pred ch----HHH--HHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEE--ECCCCccceEECCCCCEEEEeCCCCCcEE
Confidence 11 001 1334578776663 578999888771 011134444 34456688999999988876654 88999
Q ss_pred EEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCC
Q 016982 170 VFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVG 235 (379)
Q Consensus 170 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~ 235 (379)
|+|+.....-+.. + .......+.+..... .....+|+++|+...+--.|..|..||+..
T Consensus 347 VIDv~k~k~~~~~-~-----~~~~~~vvaevevGl-GPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 347 VIDVRKLDDLFDG-K-----IKPRDAVVAEPELGL-GPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEEChhhhhhhhc-c-----CCccceEEEeeccCC-CcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 9998321100000 0 000112233333322 345678999998877778899999999865
No 346
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=98.29 E-value=0.0014 Score=54.20 Aligned_cols=244 Identities=11% Similarity=0.140 Sum_probs=117.1
Q ss_pred cCcceeEEEeCCCCcEEEEEecCCeEEEEEecCC--ceEEEEEeccC--CCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982 9 FAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQE--KWEKLHVLQKH--DQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE 84 (379)
Q Consensus 9 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~--~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~ 84 (379)
...++.+|.|..+..-+++|. .+. |+...++ .++....-... .-...++.|..+ +.+++ +..+. .+...+
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~-~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~iv-G~~g~-ll~T~D 88 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGA-YGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIV-GEPGL-LLHTTD 88 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEET-TTE--EEEESSTTSS-EE-----S-----EEEEEEEETT-EEEEE-EETTE-EEEESS
T ss_pred CCCceEEEEEecCCEEEEEec-CCE--EEEECCCCccccccccCCCccceeeEEEEEecCC-ceEEE-cCCce-EEEecC
Confidence 356899999986666667664 454 4444433 34444321111 124667777643 33444 44553 333334
Q ss_pred CCc-eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee
Q 016982 85 GSE-WVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS 163 (379)
Q Consensus 85 ~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 163 (379)
.++ +..........+....+....++..++ .+..|.|+. ..+.+..|... . ....+.+..+.-+++|++++++.
T Consensus 89 gG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~iy~-T~DgG~tW~~~--~-~~~~gs~~~~~r~~dG~~vavs~ 163 (302)
T PF14870_consen 89 GGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAIYR-TTDGGKTWQAV--V-SETSGSINDITRSSDGRYVAVSS 163 (302)
T ss_dssp TTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--EEE-ESSTTSSEEEE--E--S----EEEEEE-TTS-EEEEET
T ss_pred CCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcEEE-eCCCCCCeeEc--c-cCCcceeEeEEECCCCcEEEEEC
Confidence 443 222211111223334444433443333 344565532 23444444322 2 45567889999999999999887
Q ss_pred CCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCcee---
Q 016982 164 TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA--- 240 (379)
Q Consensus 164 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~--- 240 (379)
......-||.- .....+.. ......|..|.|+|++.+.+.+ ..|.|++=+........
T Consensus 164 ~G~~~~s~~~G----------------~~~w~~~~--r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~ 224 (302)
T PF14870_consen 164 RGNFYSSWDPG----------------QTTWQPHN--RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEP 224 (302)
T ss_dssp TSSEEEEE-TT-----------------SS-EEEE----SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---
T ss_pred cccEEEEecCC----------------CccceEEc--cCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccc
Confidence 76666778631 01122222 2235679999999998876655 78888887722211110
Q ss_pred -eeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEE
Q 016982 241 -QNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTF 283 (379)
Q Consensus 241 -~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~ 283 (379)
.........+..++|.+++.+.+++..+.+ +.+.+..+.|+.
T Consensus 225 ~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l-~~S~DgGktW~~ 267 (302)
T PF14870_consen 225 IIPIKTNGYGILDLAYRPPNEIWAVGGSGTL-LVSTDGGKTWQK 267 (302)
T ss_dssp B-TTSS--S-EEEEEESSSS-EEEEESTT-E-EEESSTTSS-EE
T ss_pred cCCcccCceeeEEEEecCCCCEEEEeCCccE-EEeCCCCccceE
Confidence 111122344789999999999998877754 567777778885
No 347
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.25 E-value=1.3e-06 Score=78.79 Aligned_cols=188 Identities=10% Similarity=0.045 Sum_probs=127.6
Q ss_pred eEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCC--e
Q 016982 44 WEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK--T 121 (379)
Q Consensus 44 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~ 121 (379)
++..+.+..|....+|++|+-+.++|+.|+..|.|+++++.+|...... ..|..+++.+.-+.+|..+++.+.-. .
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~--ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESV--NCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccc--cccccccccccccCCcceeeeeccccCch
Confidence 4566778888999999999999999999999999999999999755544 77999999999999998777765432 3
Q ss_pred EEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEe-
Q 016982 122 VCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL- 200 (379)
Q Consensus 122 v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 200 (379)
..+|++..-.. ... ....-.++.|+.....-+.|+......+||+ +++..+.++
T Consensus 1169 saLW~~~s~~~--~~H-----sf~ed~~vkFsn~~q~r~~gt~~d~a~~YDv------------------qT~~~l~tyl 1223 (1516)
T KOG1832|consen 1169 SALWDASSTGG--PRH-----SFDEDKAVKFSNSLQFRALGTEADDALLYDV------------------QTCSPLQTYL 1223 (1516)
T ss_pred HHHhccccccC--ccc-----cccccceeehhhhHHHHHhcccccceEEEec------------------ccCcHHHHhc
Confidence 56888765321 111 1234567888866544455666667899997 455444442
Q ss_pred e---cCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEE
Q 016982 201 D---LSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVG 265 (379)
Q Consensus 201 ~---~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 265 (379)
. +....-+...|+|+..+++ .|| .+||++.... +..+.... .--.-.|+|.|.-++..
T Consensus 1224 t~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~a-Ih~FD~ft-~~~~G~FHP~g~eVIIN 1284 (1516)
T KOG1832|consen 1224 TDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEA-IHRFDQFT-DYGGGGFHPSGNEVIIN 1284 (1516)
T ss_pred CcchhhhhhccccccCCCcceEe---eCc--eeeeeccHHH-Hhhhhhhe-ecccccccCCCceEEee
Confidence 1 1122336789999988776 455 4799988743 34333222 11234578877655543
No 348
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=0.0035 Score=54.57 Aligned_cols=220 Identities=12% Similarity=0.057 Sum_probs=136.2
Q ss_pred eeEEEeCCCCcEE-EEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeC---CCeEEEEeccCCce
Q 016982 13 ITCHAWSPDHAMV-AFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSH---DRNSYVWNQEGSEW 88 (379)
Q Consensus 13 i~~~~~s~~~~~l-~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~vw~~~~~~~ 88 (379)
...++.++.++.+ +....++.|.+.|..+. .......--. ....++++|+++.+..+.. ++++.+.|..+...
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~--~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~ 152 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATN--TVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV 152 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCccc--ceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE
Confidence 3467888888744 44445689999997765 3333322211 4578999999988877655 68888888888876
Q ss_pred eeeEEeecCCCceeEEEECCCCCEEEEEe-CCCeEEEEEeecCCcee-EEEEEeecCCcCEEEEEEcCCCcEEEEeeCC-
Q 016982 89 VPTLVILRLNRAALCVQWSPKENKFAVGS-GAKTVCICYYEQENNWW-VSKLIRKRHDSSVTSVAWHPNNVFLATTSTD- 165 (379)
Q Consensus 89 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d- 165 (379)
..... . ...+ ..+++.|+|+.+.+.. .++.+.+.|........ ..... ..-...-..+.++|+++++......
T Consensus 153 ~~~~~-v-G~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~-~~~~~~P~~i~v~~~g~~~yV~~~~~ 228 (381)
T COG3391 153 TATIP-V-GNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSL-VGVGTGPAGIAVDPDGNRVYVANDGS 228 (381)
T ss_pred EEEEe-c-CCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccc-cccCCCCceEEECCCCCEEEEEeccC
Confidence 55532 2 2233 8999999999777666 68889998866654210 00000 1222334678899999866554433
Q ss_pred --CeEEEEeccccccccccccCCCccCCcccceEEE-eecCCcceEEEEECCCCCEEEEEc-CCCeEEEEECCCCCceee
Q 016982 166 --GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQ-LDLSFSWAFGVKWSPSGNTLAYVG-HNSMIYFVDDVGPSPLAQ 241 (379)
Q Consensus 166 --~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~v~d~~~~~~~~~ 241 (379)
+.+...|. .++..... ..........+..+|+|+.+.+.. ..+.+.+.|..+... ..
T Consensus 229 ~~~~v~~id~------------------~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v-~~ 289 (381)
T COG3391 229 GSNNVLKIDT------------------ATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRV-VK 289 (381)
T ss_pred CCceEEEEeC------------------CCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCce-ee
Confidence 57888875 33333332 111111456789999999988774 458899999777552 23
Q ss_pred eeeee---cCCeeeEEEecC
Q 016982 242 NVAFR---DLPLRDVLFVSE 258 (379)
Q Consensus 242 ~~~~~---~~~i~~~~~s~~ 258 (379)
..... ...+..+++.+.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 290 TGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred eecccccccccceeccceee
Confidence 33222 223555666553
No 349
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.18 E-value=0.0029 Score=53.43 Aligned_cols=218 Identities=11% Similarity=0.059 Sum_probs=104.0
Q ss_pred EeCCCCcEEEEEec-C--CeEEEEEecCCceEEEEEeccCC-CceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeE
Q 016982 17 AWSPDHAMVAFCPN-N--NEVHIYKLIQEKWEKLHVLQKHD-QIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTL 92 (379)
Q Consensus 17 ~~s~~~~~l~~~~~-d--g~i~i~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~ 92 (379)
+|.+||+.|+.++. + ..+++.|+.++ .+.+|.... .......++|+.+.++....+..|+-.|+.+.+....+
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~---~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy 118 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATG---EITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVY 118 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT----EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccC---EEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEE
Confidence 57789977766554 4 46777777786 333443332 22235667888888877766678999999998754444
Q ss_pred EeecCCCceeEEEE--CCCCCEEEEEeC----------------------CCeEEEEEeecCCceeEEEEEeecCCcCEE
Q 016982 93 VILRLNRAALCVQW--SPKENKFAVGSG----------------------AKTVCICYYEQENNWWVSKLIRKRHDSSVT 148 (379)
Q Consensus 93 ~~~~~~~~v~~~~~--~~~~~~l~~~~~----------------------d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~ 148 (379)
.. ...-+-...| +.++..++-.-. ...|.-.|+.+++ .+.+ ..-...+.
T Consensus 119 ~~--p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~----~~~v-~~~~~wlg 191 (386)
T PF14583_consen 119 EV--PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE----RKVV-FEDTDWLG 191 (386)
T ss_dssp E----TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT------EEEE-EEESS-EE
T ss_pred EC--CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc----eeEE-EecCcccc
Confidence 33 2333333445 345555433210 1223334444444 2333 23455677
Q ss_pred EEEEcCCC-cEEEEeeC---CC-eEEEEeccccccccccccCCCccCCcccceEEEeecC--CcceEEEEECCCCCEEEE
Q 016982 149 SVAWHPNN-VFLATTST---DG-KCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS--FSWAFGVKWSPSGNTLAY 221 (379)
Q Consensus 149 ~~~~~p~~-~~l~~~~~---d~-~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~sp~~~~l~~ 221 (379)
.+.|+|.. ..|+.|-+ +. .-+||-+. ..+.....+..+ ...+..=-|.|||..+..
T Consensus 192 H~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~-----------------~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y 254 (386)
T PF14583_consen 192 HVQFSPTDPTLIMFCHEGPWDLVDQRIWTIN-----------------TDGSNVKKVHRRMEGESVGHEFWVPDGSTIWY 254 (386)
T ss_dssp EEEEETTEEEEEEEEE-S-TTTSS-SEEEEE-----------------TTS---EESS---TTEEEEEEEE-TTSS-EEE
T ss_pred CcccCCCCCCEEEEeccCCcceeceEEEEEE-----------------cCCCcceeeecCCCCcccccccccCCCCEEEE
Confidence 89999976 44444433 22 23667652 122222222211 234556678999987765
Q ss_pred Ec-----CCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEE
Q 016982 222 VG-----HNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGV 264 (379)
Q Consensus 222 ~~-----~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 264 (379)
-+ .+..|.-+|+.+.... .+. ...+...+.-++||+++++
T Consensus 255 ~~~~~~~~~~~i~~~d~~t~~~~--~~~-~~p~~~H~~ss~Dg~L~vG 299 (386)
T PF14583_consen 255 DSYTPGGQDFWIAGYDPDTGERR--RLM-EMPWCSHFMSSPDGKLFVG 299 (386)
T ss_dssp EEEETTT--EEEEEE-TTT--EE--EEE-EE-SEEEEEE-TTSSEEEE
T ss_pred EeecCCCCceEEEeeCCCCCCce--EEE-eCCceeeeEEcCCCCEEEe
Confidence 32 2446777788876532 222 2224445666789999984
No 350
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.12 E-value=0.00079 Score=61.44 Aligned_cols=151 Identities=17% Similarity=0.170 Sum_probs=88.9
Q ss_pred cceeEEEeCCCCcEEEEEe------cCC--eEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC-------
Q 016982 11 QCITCHAWSPDHAMVAFCP------NNN--EVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD------- 75 (379)
Q Consensus 11 ~~i~~~~~s~~~~~l~~~~------~dg--~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------- 75 (379)
..+...+++|+|+.+|+.. .|. .|.+++.... ....+.+. ..+...|+|+|..|.+....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~---~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV---AVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc---ceeeecCC--CCCCceECCCCCceEEEecCcceEEEe
Confidence 4678899999999887765 233 4555554322 22223332 37889999998877776532
Q ss_pred -----CeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecC--CceeEEE--EEeecCCcC
Q 016982 76 -----RNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQE--NNWWVSK--LIRKRHDSS 146 (379)
Q Consensus 76 -----~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~--~~~~~~~--~~~~~~~~~ 146 (379)
+.+.+.++..++... ...+.|..+.|+|||..++... ++.|++--+... ....+.. .+.......
T Consensus 425 ~~~~~gql~~~~vd~ge~~~-----~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~ 498 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS-----RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDT 498 (591)
T ss_pred ccCCCceEEEEeccCchhhh-----ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCc
Confidence 223333443332111 2356799999999999988876 477766333221 1111111 121233344
Q ss_pred EEEEEEcCCCcEEEEeeCCCeEEEEec
Q 016982 147 VTSVAWHPNNVFLATTSTDGKCRVFST 173 (379)
Q Consensus 147 v~~~~~~p~~~~l~~~~~d~~i~v~d~ 173 (379)
+..+.|.+++.++ ++..++...+|.+
T Consensus 499 ~~~l~W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 499 AVSLDWRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred cccceEecCCEEE-EEecCCCCceEEE
Confidence 6889999988854 5555555556655
No 351
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.11 E-value=0.0043 Score=52.77 Aligned_cols=144 Identities=17% Similarity=0.224 Sum_probs=97.4
Q ss_pred CcEEEEEec---------C-CeEEEEEecCC-----ceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCC
Q 016982 22 HAMVAFCPN---------N-NEVHIYKLIQE-----KWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGS 86 (379)
Q Consensus 22 ~~~l~~~~~---------d-g~i~i~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~ 86 (379)
..+|++|+. . |.|.+|++... +.+.+.... ..++|++++-. ++ +|+.+. ++.|.+|++...
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~-~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~ 117 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTE-VKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNS 117 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEE-ESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETT
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEe-ecCcceEhhhh-CC-EEEEee-cCEEEEEEccCc
Confidence 578888754 2 89999999984 445554443 46789998866 34 455544 478999999988
Q ss_pred c-eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCC
Q 016982 87 E-WVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTD 165 (379)
Q Consensus 87 ~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d 165 (379)
+ ..+... ......+.++... ++++++|.....+.++.++.... .+...-.......++++.|-++++.++.+..+
T Consensus 118 ~~l~~~~~-~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~-~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~ 193 (321)
T PF03178_consen 118 KTLLKKAF-YDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENN-KLILVARDYQPRWVTAAEFLVDEDTIIVGDKD 193 (321)
T ss_dssp SSEEEEEE-E-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE--EEEEEEESS-BEEEEEEEE-SSSEEEEEETT
T ss_pred ccchhhhe-ecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCC-EEEEEEecCCCccEEEEEEecCCcEEEEEcCC
Confidence 7 544443 2233456666555 66999999989999987776331 12222223445678899998776789999999
Q ss_pred CeEEEEec
Q 016982 166 GKCRVFST 173 (379)
Q Consensus 166 ~~i~v~d~ 173 (379)
|.+.++..
T Consensus 194 gnl~~l~~ 201 (321)
T PF03178_consen 194 GNLFVLRY 201 (321)
T ss_dssp SEEEEEEE
T ss_pred CeEEEEEE
Confidence 99999976
No 352
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.11 E-value=0.00042 Score=64.31 Aligned_cols=133 Identities=13% Similarity=-0.004 Sum_probs=89.4
Q ss_pred CCCeEEEEEeecCCceeEEEEEeecCC-cCEEEEEEcCC-------CcEEEEeeCCCeEEEEeccccccccccccCCCcc
Q 016982 118 GAKTVCICYYEQENNWWVSKLIRKRHD-SSVTSVAWHPN-------NVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSS 189 (379)
Q Consensus 118 ~d~~v~i~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~p~-------~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 189 (379)
....|+-.|++.++ +.... ..+. .+|.. +.|+ ......|-.+..+..||.+..
T Consensus 502 ~~~~ly~mDLe~GK---VV~eW-~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~------------- 562 (794)
T PF08553_consen 502 NPNKLYKMDLERGK---VVEEW-KVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLS------------- 562 (794)
T ss_pred CCCceEEEecCCCc---EEEEe-ecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCC-------------
Confidence 45678888888887 55655 3333 33444 4443 234456777888999987321
Q ss_pred CCcccceEE----EeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEE
Q 016982 190 DTKFGEQIL----QLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVG 265 (379)
Q Consensus 190 ~~~~~~~~~----~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 265 (379)
..+++. .+ ......++++-+.+| +||+|+.+|.|++||- .+......+.+-+.||..|..+.||++|++.
T Consensus 563 ---~~k~v~~~~k~Y-~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaT 636 (794)
T PF08553_consen 563 ---GNKLVDSQSKQY-SSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILAT 636 (794)
T ss_pred ---CCceeecccccc-ccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEe
Confidence 111111 11 123457788877777 5888999999999994 3343334556668999999999999999988
Q ss_pred eCCCeEEEEe
Q 016982 266 FDCNPMVFAA 275 (379)
Q Consensus 266 ~d~~~~i~~~ 275 (379)
.+..+.++..
T Consensus 637 c~tyLlLi~t 646 (794)
T PF08553_consen 637 CKTYLLLIDT 646 (794)
T ss_pred ecceEEEEEE
Confidence 8888888774
No 353
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=2.6e-05 Score=68.06 Aligned_cols=95 Identities=15% Similarity=0.288 Sum_probs=78.7
Q ss_pred CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceE-EEEEcCCCCEEEEEeCCCeEEEEeccCCce
Q 016982 10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVS-GIDWSVRSNRIVTVSHDRNSYVWNQEGSEW 88 (379)
Q Consensus 10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~ 88 (379)
...|.-+.|+|.-.++|++..+|.|.++.+. ++.+.+++-|...++ +++|.|||+.|+.|-.||+|++.|++++..
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n---~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN---WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec---cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 4678889999999999999999999999887 378888887777777 999999999999999999999999999874
Q ss_pred eeeEEeecCCCceeEEEECC
Q 016982 89 VPTLVILRLNRAALCVQWSP 108 (379)
Q Consensus 89 ~~~~~~~~~~~~v~~~~~~~ 108 (379)
+.... .....+|.++-|.+
T Consensus 97 l~~~~-~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 LVSFL-FSVETDISKGIWDR 115 (665)
T ss_pred eeccc-cccccchheeeccc
Confidence 44421 22346777777763
No 354
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.06 E-value=0.0037 Score=50.14 Aligned_cols=178 Identities=10% Similarity=0.129 Sum_probs=114.1
Q ss_pred eccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeec
Q 016982 50 LQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQ 129 (379)
Q Consensus 50 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~ 129 (379)
+.+-...+.++.|+|+.+.|++..+...-.|+=-..|+.+..+.+.. -.....+.+..++++.++--.++.+.++.++.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g-~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG-FSDPETIEYIGGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc-cCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence 34445569999999999999888887777777777888877776544 34556778887777777767788898888776
Q ss_pred CCceeEEEE----Ee-ecC-CcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecC
Q 016982 130 ENNWWVSKL----IR-KRH-DSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS 203 (379)
Q Consensus 130 ~~~~~~~~~----~~-~~~-~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (379)
.......+. +. ..+ +.....++|.|.+..|..+=+..-+.||.+... .................+ .
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~------~~~l~~~~~~~~~~~~~~--f 231 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQS------PSSLSVHASLDPTADRDL--F 231 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecC------CcccccccccCcccccce--E
Confidence 642111111 10 122 556789999999988888888777888865210 000000000000000000 1
Q ss_pred CcceEEEEECC-CCCEEEEEcCCCeEEEEECCCC
Q 016982 204 FSWAFGVKWSP-SGNTLAYVGHNSMIYFVDDVGP 236 (379)
Q Consensus 204 ~~~v~~~~~sp-~~~~l~~~~~d~~i~v~d~~~~ 236 (379)
-..+.++.|++ .+.+|+.+.+++.+.-.|....
T Consensus 232 ~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 232 VLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred eeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 23477889997 5667777778888888886654
No 355
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=4e-05 Score=66.92 Aligned_cols=95 Identities=14% Similarity=0.221 Sum_probs=77.4
Q ss_pred CcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceE-EEEECCCCCEEEEE
Q 016982 144 DSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAF-GVKWSPSGNTLAYV 222 (379)
Q Consensus 144 ~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~sp~~~~l~~~ 222 (379)
...+..+.|+|.-.++|++..+|.+.++.+ . .+.+-++..+...++ +++|.|||+.|++|
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~------------------n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg 80 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRL------------------N-WQRLWTIPIPGENVTASLCWRPDGKLLAVG 80 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEe------------------c-cceeEeccCCCCccceeeeecCCCCEEEEE
Confidence 456788999999999999999999999975 3 677777876777777 99999999999999
Q ss_pred cCCCeEEEEECCCCCceeeeeeeecCCeeeEEEec
Q 016982 223 GHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVS 257 (379)
Q Consensus 223 ~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~ 257 (379)
-.||+|++.|..++..+....-....+|..+-|++
T Consensus 81 ~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 81 FKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred ecCCeEEEEEccCCCceeccccccccchheeeccc
Confidence 99999999999998765443333456778888863
No 356
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.02 E-value=0.0066 Score=51.67 Aligned_cols=216 Identities=8% Similarity=0.066 Sum_probs=120.3
Q ss_pred eEEEEEecCCceEEEEEeccCCCceEEE---EEcCC----CCEEEEEeC----------CCeEEEEeccCC----ceeee
Q 016982 33 EVHIYKLIQEKWEKLHVLQKHDQIVSGI---DWSVR----SNRIVTVSH----------DRNSYVWNQEGS----EWVPT 91 (379)
Q Consensus 33 ~i~i~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~----~~~l~~~~~----------d~~i~vw~~~~~----~~~~~ 91 (379)
.|++.|..+.+.-....+... ..+.++ .+..+ ..+|+.|+. .|.|.++++... .....
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~-E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPN-EHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETT-EEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred EEEEEeCCCCeEEEEEECCCC-ceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 577777766532223333332 233433 34332 467777652 288999999884 12222
Q ss_pred EEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEE
Q 016982 92 LVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVF 171 (379)
Q Consensus 92 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~ 171 (379)
+.....+++|++++-- ++. |+++. .+.|.+|++...+. +.+.........+.++... +++++.|.....+.++
T Consensus 82 i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~--l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~ 154 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKT--LLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLL 154 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSS--EEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEE
T ss_pred EEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCccc--chhhheecceEEEEEEecc--ccEEEEEEcccCEEEE
Confidence 2234557889988766 344 44444 48899999998872 1222112333466666664 5689999888888888
Q ss_pred eccccccccccccCCCccCCcccceEEEe--ecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCC-------C-ceee
Q 016982 172 STFIKGVDIKEKKEGTSSDTKFGEQILQL--DLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGP-------S-PLAQ 241 (379)
Q Consensus 172 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~-------~-~~~~ 241 (379)
... .....+..+ ......++++.|-++++.++.+..+|.+.++..... . .+..
T Consensus 155 ~~~-----------------~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~ 217 (321)
T PF03178_consen 155 RYD-----------------EENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLER 217 (321)
T ss_dssp EEE-----------------TTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEE
T ss_pred EEE-----------------ccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCccccccccccee
Confidence 541 112222222 233556888888877678889999999999976521 1 2222
Q ss_pred eeeee-cCCeeeE---EEecC--C-------cEEEEEeCCCeEEE
Q 016982 242 NVAFR-DLPLRDV---LFVSE--K-------MVIGVGFDCNPMVF 273 (379)
Q Consensus 242 ~~~~~-~~~i~~~---~~s~~--~-------~~l~~~~d~~~~i~ 273 (379)
....| +..|+++ ++.|. + .++.++.+|.+...
T Consensus 218 ~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 218 ISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 22233 4556666 44451 1 15557777777643
No 357
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.96 E-value=0.0073 Score=50.02 Aligned_cols=232 Identities=13% Similarity=0.132 Sum_probs=107.2
Q ss_pred ceeEEEeCCCCcEEEEEecCCeEEEEEecC-CceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceee
Q 016982 12 CITCHAWSPDHAMVAFCPNNNEVHIYKLIQ-EKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVP 90 (379)
Q Consensus 12 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~ 90 (379)
..+++.|..+ ..+++| ..+. .+...+. ..++.+..-..-......+....++ ....++..|.|..=.=....+..
T Consensus 63 ~l~~I~f~~~-~g~ivG-~~g~-ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~~~~G~iy~T~DgG~tW~~ 138 (302)
T PF14870_consen 63 HLNSISFDGN-EGWIVG-EPGL-LLHTTDGGKTWERVPLSSKLPGSPFGITALGDG-SAELAGDRGAIYRTTDGGKTWQA 138 (302)
T ss_dssp EEEEEEEETT-EEEEEE-ETTE-EEEESSTTSS-EE----TT-SS-EEEEEEEETT-EEEEEETT--EEEESSTTSSEEE
T ss_pred eEEEEEecCC-ceEEEc-CCce-EEEecCCCCCcEEeecCCCCCCCeeEEEEcCCC-cEEEEcCCCcEEEeCCCCCCeeE
Confidence 3567777643 444544 4453 3333332 2455544222222233344443444 33333445654332222224433
Q ss_pred eEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEE
Q 016982 91 TLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRV 170 (379)
Q Consensus 91 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v 170 (379)
.. ....+.+..+.-+++|++++++..-....-|+ .+..... ..- ......|..+.|.|++.+.+.+ ..|.++.
T Consensus 139 ~~--~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~--~G~~~w~-~~~-r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~ 211 (302)
T PF14870_consen 139 VV--SETSGSINDITRSSDGRYVAVSSRGNFYSSWD--PGQTTWQ-PHN-RNSSRRIQSMGFSPDGNLWMLA-RGGQIQF 211 (302)
T ss_dssp EE---S----EEEEEE-TTS-EEEEETTSSEEEEE---TT-SS-E-EEE---SSS-EEEEEE-TTS-EEEEE-TTTEEEE
T ss_pred cc--cCCcceeEeEEECCCCcEEEEECcccEEEEec--CCCccce-EEc-cCccceehhceecCCCCEEEEe-CCcEEEE
Confidence 33 44567888999999999888887544444443 3322111 111 3456889999999998766644 7888877
Q ss_pred EeccccccccccccCCCccCCcccce----EEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeee--
Q 016982 171 FSTFIKGVDIKEKKEGTSSDTKFGEQ----ILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVA-- 244 (379)
Q Consensus 171 ~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-- 244 (379)
=+.. ...+. +..+......+..++|.+++...++|+. |.+ +.....++.-.+.-.
T Consensus 212 s~~~-----------------~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~ 272 (302)
T PF14870_consen 212 SDDP-----------------DDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGE 272 (302)
T ss_dssp EE-T-----------------TEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGT
T ss_pred ccCC-----------------CCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECcccc
Confidence 6510 11111 1111112334789999999888877654 433 344445443222211
Q ss_pred eecCCeeeEEEecCCcEEEEEeCCCeEEE
Q 016982 245 FRDLPLRDVLFVSEKMVIGVGFDCNPMVF 273 (379)
Q Consensus 245 ~~~~~i~~~~~s~~~~~l~~~~d~~~~i~ 273 (379)
.-...++.+.|.++.+-++.+.++.+.-|
T Consensus 273 ~~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 273 NVPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp TSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred CCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 12345889999988888888888876543
No 358
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.94 E-value=0.0046 Score=53.59 Aligned_cols=192 Identities=13% Similarity=0.103 Sum_probs=100.9
Q ss_pred cCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEecc------CCCceEEEEEcC-----CC---CEEEEEeC
Q 016982 9 FAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQK------HDQIVSGIDWSV-----RS---NRIVTVSH 74 (379)
Q Consensus 9 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~------~~~~v~~~~~~~-----~~---~~l~~~~~ 74 (379)
..++|++++.| |=.++|.|..+|.+.|.|++....-....+.. ....|+++.|+. |+ -.|++|..
T Consensus 85 ~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn 163 (395)
T PF08596_consen 85 KQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTN 163 (395)
T ss_dssp -S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEET
T ss_pred cCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeC
Confidence 36899999997 56799999999999999997763222222333 234678888862 22 36788899
Q ss_pred CCeEEEEeccC---CceeeeEE-e-ecCCCceeEEE-ECCC-C-------------------CEEEEEeCCCeEEEEEee
Q 016982 75 DRNSYVWNQEG---SEWVPTLV-I-LRLNRAALCVQ-WSPK-E-------------------NKFAVGSGAKTVCICYYE 128 (379)
Q Consensus 75 d~~i~vw~~~~---~~~~~~~~-~-~~~~~~v~~~~-~~~~-~-------------------~~l~~~~~d~~v~i~~~~ 128 (379)
.|.+.+|.+.- +.+...+. . ..+.+++..+. ++.+ | +-+++...+..++++...
T Consensus 164 ~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~ 243 (395)
T PF08596_consen 164 SGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPP 243 (395)
T ss_dssp TSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT
T ss_pred CCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCC
Confidence 99999998752 22221111 1 13445555554 3221 1 123444446788887665
Q ss_pred cCCceeEEEEEeecCCcCEEEEEEc-----CCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecC
Q 016982 129 QENNWWVSKLIRKRHDSSVTSVAWH-----PNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS 203 (379)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~v~~~~~~-----p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (379)
..+. ..+.+ ...-.+..+.+- ..+..|++-..+|.+++|.+ +.-+.+..+...
T Consensus 244 ~~k~--~~K~~--~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SL------------------P~Lkei~~~~l~ 301 (395)
T PF08596_consen 244 KSKG--AHKSF--DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSL------------------PSLKEIKSVSLP 301 (395)
T ss_dssp ---E--EEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEET------------------TT--EEEEEE-S
T ss_pred CCcc--cceee--ccccccceEEEEeecccCCceEEEEEECCCcEEEEEC------------------CCchHhhcccCC
Confidence 5442 22222 121223334442 24677888889999999987 445555555432
Q ss_pred C----cceEEEEECCCCCEEEEEc
Q 016982 204 F----SWAFGVKWSPSGNTLAYVG 223 (379)
Q Consensus 204 ~----~~v~~~~~sp~~~~l~~~~ 223 (379)
. ..+....++++|..++..+
T Consensus 302 ~~~d~~~~~~ssis~~Gdi~~~~g 325 (395)
T PF08596_consen 302 PPLDSRRLSSSSISRNGDIFYWTG 325 (395)
T ss_dssp S---HHHHTT-EE-TTS-EEEE-S
T ss_pred CccccccccccEECCCCCEEEEeC
Confidence 1 2344566677887766654
No 359
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.93 E-value=0.0088 Score=49.88 Aligned_cols=195 Identities=10% Similarity=-0.033 Sum_probs=105.1
Q ss_pred EEEEcCCCCEEEEEe-CCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEE
Q 016982 59 GIDWSVRSNRIVTVS-HDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSK 137 (379)
Q Consensus 59 ~~~~~~~~~~l~~~~-~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~ 137 (379)
...|.++...|+-+. ..+.|.-|+..+++. .. ......+.++..-..+..|+++.. .+.+++.+.+.......
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~---~~~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~ 102 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKK-RV---FPSPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLA 102 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCce-EE---EECCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEec
Confidence 446778777554443 567888898886652 22 233445555555444555555542 35556665444210111
Q ss_pred EEee-cCCcCEEEEEEcCCCcEEEEeeCC---------CeEEEEeccccccccccccCCCccCCcccceEEEeecCCcce
Q 016982 138 LIRK-RHDSSVTSVAWHPNNVFLATTSTD---------GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWA 207 (379)
Q Consensus 138 ~~~~-~~~~~v~~~~~~p~~~~l~~~~~d---------~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 207 (379)
.... ......+.+...|+|.+.++.... ..-.+|.+ ...+..+..+..+-..-
T Consensus 103 ~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~-----------------~p~g~~~~l~~~~~~~~ 165 (307)
T COG3386 103 EPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRV-----------------DPDGGVVRLLDDDLTIP 165 (307)
T ss_pred cccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEE-----------------cCCCCEEEeecCcEEec
Confidence 1101 122456778888998766653330 01123332 12344444444444446
Q ss_pred EEEEECCCCCEEEEEcC-CCeEEEEECCC--C----CceeeeeeeecCCeeeEEEecCCcEEEEEeCC--CeEEEEec
Q 016982 208 FGVKWSPSGNTLAYVGH-NSMIYFVDDVG--P----SPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDC--NPMVFAAD 276 (379)
Q Consensus 208 ~~~~~sp~~~~l~~~~~-d~~i~v~d~~~--~----~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~--~~~i~~~~ 276 (379)
+.|+||||++.|..+.. .+.|.-|++.. . ...........+..-.++...+|.+.+++..+ .+..|+.+
T Consensus 166 NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 166 NGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred CceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC
Confidence 78999999988877754 47888887652 1 11111222223445567777788877543333 67777665
No 360
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.89 E-value=0.0025 Score=43.28 Aligned_cols=100 Identities=12% Similarity=0.081 Sum_probs=67.1
Q ss_pred eeEEEeCC---CC-cEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCce
Q 016982 13 ITCHAWSP---DH-AMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEW 88 (379)
Q Consensus 13 i~~~~~s~---~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~ 88 (379)
|+++++.. || +.|++|+.|..|++|+-. +.+..+.. ...|+++.-... .+++.+..+|+|-+|+-....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~----e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~Rl- 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD----EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRL- 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC----cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCccee-
Confidence 56666654 43 579999999999999855 35566654 356777776655 578889999999999864433
Q ss_pred eeeEEeecCCCceeEEEECC-C--C-CEEEEEeCCCeEE
Q 016982 89 VPTLVILRLNRAALCVQWSP-K--E-NKFAVGSGAKTVC 123 (379)
Q Consensus 89 ~~~~~~~~~~~~v~~~~~~~-~--~-~~l~~~~~d~~v~ 123 (379)
.... .+..+.++.+.. + | ..|++|-.+|.|-
T Consensus 75 ---WRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 ---WRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ---eeec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2222 233456655543 3 2 3678887788764
No 361
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.89 E-value=0.01 Score=49.29 Aligned_cols=150 Identities=13% Similarity=0.046 Sum_probs=88.2
Q ss_pred CCCCEEEEEeCCCeEEEEeccC-CceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEE----
Q 016982 64 VRSNRIVTVSHDRNSYVWNQEG-SEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKL---- 138 (379)
Q Consensus 64 ~~~~~l~~~~~d~~i~vw~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~---- 138 (379)
..++.|+.|+.+| +.+++... ....... ....|..+...|+-+.+++-+ |+.+.++++..-........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~----~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL----KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe----ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence 3468899999888 89999832 2222222 234499999999888777766 59999999876543211100
Q ss_pred ------EeecCCcCEEEEE--EcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCccc-ceEEEeecCCcceEE
Q 016982 139 ------IRKRHDSSVTSVA--WHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFG-EQILQLDLSFSWAFG 209 (379)
Q Consensus 139 ------~~~~~~~~v~~~~--~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~ 209 (379)
........+...+ -.+.+...+.......|.+|..... .... ...+++.. ...+..
T Consensus 79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~--------------~~~f~~~~ke~~l-p~~~~~ 143 (275)
T PF00780_consen 79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDP--------------RNSFSKLLKEISL-PDPPSS 143 (275)
T ss_pred ccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECC--------------cccccceeEEEEc-CCCcEE
Confidence 0012223344444 1123333444445568998875210 0112 34455544 466888
Q ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCC
Q 016982 210 VKWSPSGNTLAYVGHNSMIYFVDDVGPS 237 (379)
Q Consensus 210 ~~~sp~~~~l~~~~~d~~i~v~d~~~~~ 237 (379)
++|. ++.++.+.. ....+.|+.++.
T Consensus 144 i~~~--~~~i~v~~~-~~f~~idl~~~~ 168 (275)
T PF00780_consen 144 IAFL--GNKICVGTS-KGFYLIDLNTGS 168 (275)
T ss_pred EEEe--CCEEEEEeC-CceEEEecCCCC
Confidence 9998 556776654 457888988654
No 362
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.88 E-value=0.011 Score=49.32 Aligned_cols=224 Identities=11% Similarity=0.063 Sum_probs=126.0
Q ss_pred EEeCCCCcEE-EEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEe
Q 016982 16 HAWSPDHAMV-AFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVI 94 (379)
Q Consensus 16 ~~~s~~~~~l-~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~ 94 (379)
..|.++...| .+--..+.|.-|+..+++ ...+.. .+.+.++..-..+..|+++.. -+.+++.+++..+..+..
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~---~~~~~~-p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGK---KRVFPS-PGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAE 103 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCc---eEEEEC-CCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEecc
Confidence 3566776644 444457888999887652 233332 233344444444445655543 367777766654222211
Q ss_pred ec---CCCceeEEEECCCCCEEEEEeC---------CCeEEEEEee-cCCceeEEEEEeecCCcCEEEEEEcCCCcEEEE
Q 016982 95 LR---LNRAALCVQWSPKENKFAVGSG---------AKTVCICYYE-QENNWWVSKLIRKRHDSSVTSVAWHPNNVFLAT 161 (379)
Q Consensus 95 ~~---~~~~v~~~~~~~~~~~l~~~~~---------d~~v~i~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~ 161 (379)
.. .....+.+...|+|.+.+.... ...-.+|-+. .+. ..+.+ ..+-..-+.++|+||++.|..
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~---~~~l~-~~~~~~~NGla~SpDg~tly~ 179 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGG---VVRLL-DDDLTIPNGLAFSPDGKTLYV 179 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCC---EEEee-cCcEEecCceEECCCCCEEEE
Confidence 11 1245567888999887666444 0111355555 233 34444 454556678999999977766
Q ss_pred eeC-CCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCC-eEEEEECCCCCce
Q 016982 162 TST-DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNS-MIYFVDDVGPSPL 239 (379)
Q Consensus 162 ~~~-d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-~i~v~d~~~~~~~ 239 (379)
... .+.|.-|++.. .... .........+....+..-.++...+|.+.+++..+| .|.+|+.. ++ +
T Consensus 180 aDT~~~~i~r~~~d~------~~g~-----~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~-l 246 (307)
T COG3386 180 ADTPANRIHRYDLDP------ATGP-----IGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GK-L 246 (307)
T ss_pred EeCCCCeEEEEecCc------ccCc-----cCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-Cc-E
Confidence 654 47777777621 0000 001122222333456667788888898876554444 89999977 44 4
Q ss_pred eeeeeeecCCeeeEEEec-CCcEE
Q 016982 240 AQNVAFRDLPLRDVLFVS-EKMVI 262 (379)
Q Consensus 240 ~~~~~~~~~~i~~~~~s~-~~~~l 262 (379)
+..+......+++++|-- +.+.|
T Consensus 247 ~~~i~lP~~~~t~~~FgG~~~~~L 270 (307)
T COG3386 247 LGEIKLPVKRPTNPAFGGPDLNTL 270 (307)
T ss_pred EEEEECCCCCCccceEeCCCcCEE
Confidence 466665556788888864 34433
No 363
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.86 E-value=0.009 Score=48.01 Aligned_cols=164 Identities=12% Similarity=0.146 Sum_probs=105.1
Q ss_pred eeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEe--ccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982 6 VHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVL--QKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ 83 (379)
Q Consensus 6 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~ 83 (379)
+.+-...|.++.|+|+.+.|++......-.++=...+ ..++++ .+- ...-.+.+..++++.++--.+..+.++.+
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~G--dlirtiPL~g~-~DpE~Ieyig~n~fvi~dER~~~l~~~~v 157 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEG--DLIRTIPLTGF-SDPETIEYIGGNQFVIVDERDRALYLFTV 157 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCC--ceEEEeccccc-CChhHeEEecCCEEEEEehhcceEEEEEE
Confidence 4555677999999999988877766555555544444 454444 332 23357888888877777777888888877
Q ss_pred cCCceee-------eEEeecC-CCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecC-------CcCEE
Q 016982 84 EGSEWVP-------TLVILRL-NRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRH-------DSSVT 148 (379)
Q Consensus 84 ~~~~~~~-------~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~-------~~~v~ 148 (379)
..+.... .+....+ +.....++|.|....|+++-+-.-+.||.+...... ........+ -..+.
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~-l~~~~~~~~~~~~~~f~~DvS 236 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSS-LSVHASLDPTADRDLFVLDVS 236 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcc-cccccccCcccccceEeeccc
Confidence 6552111 1111122 567789999999999999998888888877654311 111110111 23467
Q ss_pred EEEEcCC-CcEEEEeeCCCeEEEEec
Q 016982 149 SVAWHPN-NVFLATTSTDGKCRVFST 173 (379)
Q Consensus 149 ~~~~~p~-~~~l~~~~~d~~i~v~d~ 173 (379)
++.|++. +.+|+-+.+++.+.-.|.
T Consensus 237 gl~~~~~~~~LLVLS~ESr~l~Evd~ 262 (316)
T COG3204 237 GLEFNAITNSLLVLSDESRRLLEVDL 262 (316)
T ss_pred cceecCCCCcEEEEecCCceEEEEec
Confidence 7888875 456666667777777764
No 364
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.86 E-value=0.0023 Score=58.46 Aligned_cols=163 Identities=9% Similarity=-0.042 Sum_probs=89.3
Q ss_pred CceeEEEECCCCCEEEEEe------CCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCe-EEEE
Q 016982 99 RAALCVQWSPKENKFAVGS------GAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGK-CRVF 171 (379)
Q Consensus 99 ~~v~~~~~~~~~~~l~~~~------~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~-i~v~ 171 (379)
..+...+++|+|+.++... .|..-.||-...+.. .+.+..+ .....-.|+|+|+.+.+...... +++.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~---~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV---AVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc---ceeeecC--CCCCCceECCCCCceEEEecCcceEEEe
Confidence 4678899999999888776 244445554443332 1222122 23788999999988877754322 2222
Q ss_pred eccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEE---EECCCCCcee---eeeee
Q 016982 172 STFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYF---VDDVGPSPLA---QNVAF 245 (379)
Q Consensus 172 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v---~d~~~~~~~~---~~~~~ 245 (379)
+-.. ...........+.... ...+.|..+.|||||..++... ++.|++ -....+...+ ..+..
T Consensus 425 ~~~~-------~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~ 493 (591)
T PRK13616 425 RDPA-------TGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGP 493 (591)
T ss_pred ccCC-------CceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeec
Confidence 2100 0000000001111111 1245699999999999988765 577777 4433332111 11221
Q ss_pred -ecCCeeeEEEecCCcEEEEEeCCCeEEEEecC
Q 016982 246 -RDLPLRDVLFVSEKMVIGVGFDCNPMVFAADE 277 (379)
Q Consensus 246 -~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~ 277 (379)
-...+.++.|..++.+++...+....+|...-
T Consensus 494 ~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~v 526 (591)
T PRK13616 494 GLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNL 526 (591)
T ss_pred ccCCccccceEecCCEEEEEecCCCCceEEEec
Confidence 22336889999999987655544444555443
No 365
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.86 E-value=0.0051 Score=57.43 Aligned_cols=135 Identities=13% Similarity=0.126 Sum_probs=90.3
Q ss_pred cCCeEEEEEecCCceEEEEEeccCCCc-eEEEEEcCC-------CCEEEEEeCCCeEEEEeccCCc--eeee-EEeecCC
Q 016982 30 NNNEVHIYKLIQEKWEKLHVLQKHDQI-VSGIDWSVR-------SNRIVTVSHDRNSYVWNQEGSE--WVPT-LVILRLN 98 (379)
Q Consensus 30 ~dg~i~i~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~-------~~~l~~~~~d~~i~vw~~~~~~--~~~~-~~~~~~~ 98 (379)
....|+-.|++.+ +.+..+..|... |..+ .|+ ....+.|-.+..+..||.+-.. ++.. .......
T Consensus 502 ~~~~ly~mDLe~G--KVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~ 577 (794)
T PF08553_consen 502 NPNKLYKMDLERG--KVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSK 577 (794)
T ss_pred CCCceEEEecCCC--cEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccC
Confidence 4567888888888 677777766543 4444 443 2345566677889999987543 1110 1111234
Q ss_pred CceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEecc
Q 016982 99 RAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTF 174 (379)
Q Consensus 99 ~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~ 174 (379)
....|++-+.+| +||+|+.+|.|++||-- +.. ....+ .+...+|..|..+.||++++..+ +..+.++++.
T Consensus 578 ~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~-g~~--AKT~l-p~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 578 NNFSCFATTEDG-YIAVGSNKGDIRLYDRL-GKR--AKTAL-PGLGDPIIGIDVTADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred CCceEEEecCCc-eEEEEeCCCcEEeeccc-chh--hhhcC-CCCCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence 456777766666 69999999999999843 322 22333 67789999999999999988665 5567788864
No 366
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.85 E-value=0.012 Score=48.92 Aligned_cols=243 Identities=12% Similarity=0.062 Sum_probs=129.7
Q ss_pred CCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEE------
Q 016982 20 PDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLV------ 93 (379)
Q Consensus 20 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~------ 93 (379)
..++.|+.|+.+| +++++.... ........ ...|..+...|+-+.|++-+ |+.+.++++..-.......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~-~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDP-SKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCC-ccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccc
Confidence 3578899998888 999998322 12222222 23499999999877777665 5999999987654322110
Q ss_pred ------eecCCCceeEEE--ECCCCCEEEEEeCCCeEEEEEeecCCc-e-eEEEEEeecCCcCEEEEEEcCCCcEEEEee
Q 016982 94 ------ILRLNRAALCVQ--WSPKENKFAVGSGAKTVCICYYEQENN-W-WVSKLIRKRHDSSVTSVAWHPNNVFLATTS 163 (379)
Q Consensus 94 ------~~~~~~~v~~~~--~~~~~~~l~~~~~d~~v~i~~~~~~~~-~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 163 (379)
.......+...+ -...+...++....+.|.+|.+..... . ...+.+ .....+..++|. ++.++.|.
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~--~lp~~~~~i~~~--~~~i~v~~ 155 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI--SLPDPPSSIAFL--GNKICVGT 155 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE--EcCCCcEEEEEe--CCEEEEEe
Confidence 112233444444 112333344444456899998887522 1 133333 445788999997 55677776
Q ss_pred CCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeee
Q 016982 164 TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNV 243 (379)
Q Consensus 164 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 243 (379)
.++ ..+.|+.......-. .. ...............++..+... ++.+|++- +..-.+.|..........+
T Consensus 156 ~~~-f~~idl~~~~~~~l~--~~----~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~~G~~~r~~~i 225 (275)
T PF00780_consen 156 SKG-FYLIDLNTGSPSELL--DP----SDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNKNGEPSRKSTI 225 (275)
T ss_pred CCc-eEEEecCCCCceEEe--Cc----cCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcCCCCcCcccEE
Confidence 554 667776311000000 00 00000000001112233334433 45666543 4444555654432111333
Q ss_pred eeecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEEE
Q 016982 244 AFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFI 284 (379)
Q Consensus 244 ~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~~ 284 (379)
.. ...+.++++. ..+|.+-.++.+.+++..+....+..
T Consensus 226 ~W-~~~p~~~~~~--~pyli~~~~~~iEV~~~~~~~lvQ~i 263 (275)
T PF00780_consen 226 QW-SSAPQSVAYS--SPYLIAFSSNSIEVRSLETGELVQTI 263 (275)
T ss_pred Ec-CCchhEEEEE--CCEEEEECCCEEEEEECcCCcEEEEE
Confidence 33 3345566663 45777777788999998887654443
No 367
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.84 E-value=7.6e-05 Score=40.31 Aligned_cols=38 Identities=24% Similarity=0.437 Sum_probs=33.9
Q ss_pred EEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 016982 45 EKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWN 82 (379)
Q Consensus 45 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~ 82 (379)
+....+..|...|.++.|+++++.+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45667778889999999999999999999999999996
No 368
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.84 E-value=0.019 Score=50.95 Aligned_cols=227 Identities=15% Similarity=0.109 Sum_probs=112.3
Q ss_pred ceeEEEeCCCCcEEEEEe-cC----CeEEEEEecCCceEEEE-EeccCCCceEEEEEcCCCCEEEEEeCC----------
Q 016982 12 CITCHAWSPDHAMVAFCP-NN----NEVHIYKLIQEKWEKLH-VLQKHDQIVSGIDWSVRSNRIVTVSHD---------- 75 (379)
Q Consensus 12 ~i~~~~~s~~~~~l~~~~-~d----g~i~i~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d---------- 75 (379)
.+...++||||+++|.+- .. ..++++|+.+++ .+. .+... ....+.|.++++.|+....+
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~--~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGK--FLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTE--EEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCc--CcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence 344678999999998763 23 359999999883 332 22221 12349999998877665533
Q ss_pred -CeEEEEeccCCceeeeEEeecCCCc--eeEEEECCCCCEEEEEeC---C-CeEEEEEeecC--CceeEEEEEeecCCcC
Q 016982 76 -RNSYVWNQEGSEWVPTLVILRLNRA--ALCVQWSPKENKFAVGSG---A-KTVCICYYEQE--NNWWVSKLIRKRHDSS 146 (379)
Q Consensus 76 -~~i~vw~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~---d-~~v~i~~~~~~--~~~~~~~~~~~~~~~~ 146 (379)
..|+.|.+.+......+.+...... ...+..++++++++.... + ..+.+.++... ... ..+.+.....+.
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~-~~~~l~~~~~~~ 279 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDA-KPKLLSPREDGV 279 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS--SEEEEEESSSS-
T ss_pred CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcC-CcEEEeCCCCce
Confidence 2378888877653322332332322 567889999998876543 2 34666666653 111 123331333333
Q ss_pred EEEEEEcCCCcEEEEeeC---CCeEEEEeccccccccccccCCCccCCcccceEEEeecCCc--ceEEEEECCCCCEEEE
Q 016982 147 VTSVAWHPNNVFLATTST---DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFS--WAFGVKWSPSGNTLAY 221 (379)
Q Consensus 147 v~~~~~~p~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~sp~~~~l~~ 221 (379)
...+... .+.+++.... ++.|.-.++.. . ........+..+.. .+..+.. .+.+|+.
T Consensus 280 ~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~-------~--------~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl 341 (414)
T PF02897_consen 280 EYYVDHH-GDRLYILTNDDAPNGRLVAVDLAD-------P--------SPAEWWTVLIPEDEDVSLEDVSL--FKDYLVL 341 (414)
T ss_dssp EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTS-------T--------SGGGEEEEEE--SSSEEEEEEEE--ETTEEEE
T ss_pred EEEEEcc-CCEEEEeeCCCCCCcEEEEecccc-------c--------ccccceeEEcCCCCceeEEEEEE--ECCEEEE
Confidence 3444443 4444444332 34555555410 0 00111223333333 3444444 3555554
Q ss_pred E-cCC--CeEEEEECCCCCceeeeeee-ecCCeeeEEEecCCcEE
Q 016982 222 V-GHN--SMIYFVDDVGPSPLAQNVAF-RDLPLRDVLFVSEKMVI 262 (379)
Q Consensus 222 ~-~~d--~~i~v~d~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l 262 (379)
. ..+ ..|+++++..+... ..+.. ..+.|..+...+++..+
T Consensus 342 ~~~~~~~~~l~v~~~~~~~~~-~~~~~p~~g~v~~~~~~~~~~~~ 385 (414)
T PF02897_consen 342 SYRENGSSRLRVYDLDDGKES-REIPLPEAGSVSGVSGDFDSDEL 385 (414)
T ss_dssp EEEETTEEEEEEEETT-TEEE-EEEESSSSSEEEEEES-TT-SEE
T ss_pred EEEECCccEEEEEECCCCcEE-eeecCCcceEEeccCCCCCCCEE
Confidence 3 333 36888998822222 22222 23335555555555433
No 369
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.82 E-value=0.0033 Score=42.72 Aligned_cols=98 Identities=15% Similarity=0.040 Sum_probs=63.3
Q ss_pred EEEEEEcC---CC-cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEE
Q 016982 147 VTSVAWHP---NN-VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYV 222 (379)
Q Consensus 147 v~~~~~~p---~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 222 (379)
|+++++.. +| +.|++|+.|..|++|+ ..+.+.++.. ...|+.+.-... ..++.+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--------------------~~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~ 59 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--------------------GDEIVAEITE-TDKVTSLCSLGG-GRFAYA 59 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--------------------CCcEEEEEec-ccceEEEEEcCC-CEEEEE
Confidence 45555544 33 7899999999999996 3466666665 455777776665 568888
Q ss_pred cCCCeEEEEECCCCCceeeeeeeecCCeeeEEEec-CC----cEEEEEeCCCe
Q 016982 223 GHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVS-EK----MVIGVGFDCNP 270 (379)
Q Consensus 223 ~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~-~~----~~l~~~~d~~~ 270 (379)
-.+|+|-+|+-... +...+. ...+.++++.. ++ .++++-++|.+
T Consensus 60 l~NGTVGvY~~~~R---lWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 60 LANGTVGVYDRSQR---LWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred ecCCEEEEEeCcce---eeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeE
Confidence 89999999985332 233332 33456665544 33 35555455544
No 370
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.80 E-value=0.015 Score=48.44 Aligned_cols=248 Identities=10% Similarity=0.030 Sum_probs=136.0
Q ss_pred EEEeCCCCcEEEEEe----------cCCeEEEEEecCCceEEEEEeccC-CC----ceEEEEEcCCCCEEEEEe--CCCe
Q 016982 15 CHAWSPDHAMVAFCP----------NNNEVHIYKLIQEKWEKLHVLQKH-DQ----IVSGIDWSVRSNRIVTVS--HDRN 77 (379)
Q Consensus 15 ~~~~s~~~~~l~~~~----------~dg~i~i~~~~~~~~~~~~~~~~~-~~----~v~~~~~~~~~~~l~~~~--~d~~ 77 (379)
.+..+|+++.++++. +.-.|.+||..+-.....-.++.- .. ....++++.|+++++... --..
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 356789999887652 244799999988633332333331 11 223467888888877653 3456
Q ss_pred EEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEE-EEeecCCcC-EEEEEEcCC
Q 016982 78 SYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSK-LIRKRHDSS-VTSVAWHPN 155 (379)
Q Consensus 78 i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~-~~~~~~~~~-v~~~~~~p~ 155 (379)
|.|-|+..++.+..+.. .+...-.-+. ..-+.+-|.||.+.-..++......... .++.....+ +..-++...
T Consensus 120 VtVVDl~~~kvv~ei~~---PGC~~iyP~~--~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~ 194 (342)
T PF06433_consen 120 VTVVDLAAKKVVGEIDT---PGCWLIYPSG--NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRD 194 (342)
T ss_dssp EEEEETTTTEEEEEEEG---TSEEEEEEEE--TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETT
T ss_pred EEEEECCCCceeeeecC---CCEEEEEecC--CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECC
Confidence 88999998886665532 2222222122 2457788889999888887443321111 111122222 223445555
Q ss_pred CcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEee-------cCCcceEEEEECCCCCEEEEEc-----
Q 016982 156 NVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD-------LSFSWAFGVKWSPSGNTLAYVG----- 223 (379)
Q Consensus 156 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~sp~~~~l~~~~----- 223 (379)
+..++..+.+|.|+-.|+........ .....+. -..+.-.-+++++..+.|++.-
T Consensus 195 ~~~~~F~Sy~G~v~~~dlsg~~~~~~-------------~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~ 261 (342)
T PF06433_consen 195 GGRLYFVSYEGNVYSADLSGDSAKFG-------------KPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGE 261 (342)
T ss_dssp TTEEEEEBTTSEEEEEEETTSSEEEE-------------EEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--T
T ss_pred CCeEEEEecCCEEEEEeccCCccccc-------------CcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCC
Confidence 56677678999999888743221110 1111000 0012234578887655554431
Q ss_pred ---CCC--eEEEEECCCCCceeeeeeeecCCeeeEEEecCCc-EEE-E-EeCCCeEEEEecCCCcEE
Q 016982 224 ---HNS--MIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKM-VIG-V-GFDCNPMVFAADETGIWT 282 (379)
Q Consensus 224 ---~d~--~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~-~-~~d~~~~i~~~~~~~~~~ 282 (379)
.|+ .|.++|+.+.+.+ ..+.. ..++.++..+.+.+ +|. . ..++.+.+|+...++...
T Consensus 262 gsHKdpgteVWv~D~~t~krv-~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 262 GSHKDPGTEVWVYDLKTHKRV-ARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp T-TTS-EEEEEEEETTTTEEE-EEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred CCccCCceEEEEEECCCCeEE-EEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence 122 4777898887744 55553 34688999999765 554 3 346789999987664333
No 371
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.78 E-value=0.00011 Score=39.63 Aligned_cols=38 Identities=26% Similarity=0.264 Sum_probs=32.9
Q ss_pred ceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEE
Q 016982 195 EQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVD 232 (379)
Q Consensus 195 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d 232 (379)
+++..+..|...|.++.|+|++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 44556667788899999999999999999999999996
No 372
>PHA02713 hypothetical protein; Provisional
Probab=97.76 E-value=0.0017 Score=59.37 Aligned_cols=192 Identities=9% Similarity=-0.037 Sum_probs=98.9
Q ss_pred CCcEEEEEecC------CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCC-----eEEEEeccCCcee
Q 016982 21 DHAMVAFCPNN------NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDR-----NSYVWNQEGSEWV 89 (379)
Q Consensus 21 ~~~~l~~~~~d------g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~vw~~~~~~~~ 89 (379)
++.+.+.|+.+ ..+..||..++.|..+..+........... -+|+..+.|+.++ .+..||..+.++.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~--~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV--IDDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE--ECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 55666777753 357788988876665554443222222222 2466667777653 4888999888765
Q ss_pred eeEEeecCCCceeEEEECCCCCEEEEEeCCC-----------------------eEEEEEeecCCceeEEEEEeecCCcC
Q 016982 90 PTLVILRLNRAALCVQWSPKENKFAVGSGAK-----------------------TVCICYYEQENNWWVSKLIRKRHDSS 146 (379)
Q Consensus 90 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----------------------~v~i~~~~~~~~~~~~~~~~~~~~~~ 146 (379)
..-...........+.+ +++..+.|+.++ .+..||..+.. |.....+ ......
T Consensus 381 ~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~-W~~v~~m-~~~r~~ 456 (557)
T PHA02713 381 MLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI-WETLPNF-WTGTIR 456 (557)
T ss_pred ECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe-EeecCCC-Cccccc
Confidence 43221111111122222 577777777543 35556655543 3222222 111111
Q ss_pred EEEEEEcCCCcEEEEeeCCC------eEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEE
Q 016982 147 VTSVAWHPNNVFLATTSTDG------KCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLA 220 (379)
Q Consensus 147 v~~~~~~p~~~~l~~~~~d~------~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 220 (379)
. +++ .-+++..+.|+.++ .+..||.... .....+..+.........+.+ +++..+
T Consensus 457 ~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~---------------~~W~~~~~m~~~r~~~~~~~~--~~~iyv 517 (557)
T PHA02713 457 P-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTY---------------NGWELITTTESRLSALHTILH--DNTIMM 517 (557)
T ss_pred C-cEE-EECCEEEEEeCCCCCCccceeEEEecCCCC---------------CCeeEccccCcccccceeEEE--CCEEEE
Confidence 1 122 22577777777542 3567775210 123333333332222223333 578888
Q ss_pred EEcCCC--eEEEEECCCCC
Q 016982 221 YVGHNS--MIYFVDDVGPS 237 (379)
Q Consensus 221 ~~~~d~--~i~v~d~~~~~ 237 (379)
+|+.++ .+..||..+.+
T Consensus 518 ~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 518 LHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred EeeecceeehhhcCccccc
Confidence 888887 67777766654
No 373
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.76 E-value=0.013 Score=46.77 Aligned_cols=238 Identities=10% Similarity=0.036 Sum_probs=119.5
Q ss_pred EEEeCCCC-cEEEEEecCCe-EEEEEecCCceEEEEEeccCCC--ceEEEEEcCCCCEEEEEeCC-----CeEEEEeccC
Q 016982 15 CHAWSPDH-AMVAFCPNNNE-VHIYKLIQEKWEKLHVLQKHDQ--IVSGIDWSVRSNRIVTVSHD-----RNSYVWNQEG 85 (379)
Q Consensus 15 ~~~~s~~~-~~l~~~~~dg~-i~i~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d-----~~i~vw~~~~ 85 (379)
.++|+|.. .-++.+-+-|+ ..++|..+.. ...++...++ -.-.=.|||||.+|...-+| |.|-|||...
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~--~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQ--EPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCc--CcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence 45666643 34555555554 4567776652 2222221111 11123589999998765433 6799999884
Q ss_pred CceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEE--------EeecCCcee----------EEEE-E-eecCCc
Q 016982 86 SEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCIC--------YYEQENNWW----------VSKL-I-RKRHDS 145 (379)
Q Consensus 86 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~--------~~~~~~~~~----------~~~~-~-~~~~~~ 145 (379)
+ ..+.-++..|.-....+.|.+||+.++++. |-|... |++..++.. +.+. + ...+.-
T Consensus 150 ~-fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~l 226 (366)
T COG3490 150 G-FQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQL 226 (366)
T ss_pred c-cceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhc
Confidence 4 334444456777778999999999998875 323322 122211100 0000 0 012334
Q ss_pred CEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeec-------CCcceEEEEECCCCCE
Q 016982 146 SVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDL-------SFSWAFGVKWSPSGNT 218 (379)
Q Consensus 146 ~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~v~~~~~sp~~~~ 218 (379)
.+..++..+||+.++-+-..|.-. | .++.......++.+.-+.. ....|-+++.+.+..+
T Consensus 227 SiRHld~g~dgtvwfgcQy~G~~~---------d----~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~gl 293 (366)
T COG3490 227 SIRHLDIGRDGTVWFGCQYRGPRN---------D----LPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGL 293 (366)
T ss_pred ceeeeeeCCCCcEEEEEEeeCCCc---------c----CCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCe
Confidence 566666666665444332222100 0 0000000122232222221 1234677888876666
Q ss_pred EEEEc-CCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEE
Q 016982 219 LAYVG-HNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFA 274 (379)
Q Consensus 219 l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~ 274 (379)
++..+ ..+...+||..++... ..... .....++-. .+-+.+++.++.+.+++
T Consensus 294 V~lTSP~GN~~vi~da~tG~vv-~~a~l--~daaGva~~-~~gf~vssg~G~~~~~s 346 (366)
T COG3490 294 VALTSPRGNRAVIWDAATGAVV-SEAAL--PDAAGVAAA-KGGFAVSSGQGRIIFYS 346 (366)
T ss_pred EEEecCCCCeEEEEEcCCCcEE-ecccc--cccccceec-cCceEEecCCceEEecc
Confidence 65555 5556778999887632 22111 112222221 34566677777776653
No 374
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.74 E-value=0.016 Score=47.22 Aligned_cols=150 Identities=19% Similarity=0.145 Sum_probs=91.6
Q ss_pred ceeEEEeCCCCcEEEEEe---cCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-ccCCc
Q 016982 12 CITCHAWSPDHAMVAFCP---NNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWN-QEGSE 87 (379)
Q Consensus 12 ~i~~~~~s~~~~~l~~~~---~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~-~~~~~ 87 (379)
.+...+++++++.+|... ....++++..... ....+.+ ..+....|++++...+....+...+++. ...++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~---~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP---VRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc---ceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 688999999999887665 2335555544332 2222232 3778899999987776666666666663 33333
Q ss_pred eeeeEEeec-CCCceeEEEECCCCCEEEEEe---CCCeEEEEEeecCCce---eEEEEEe--ecCCcCEEEEEEcCCCcE
Q 016982 88 WVPTLVILR-LNRAALCVQWSPKENKFAVGS---GAKTVCICYYEQENNW---WVSKLIR--KRHDSSVTSVAWHPNNVF 158 (379)
Q Consensus 88 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~---~d~~v~i~~~~~~~~~---~~~~~~~--~~~~~~v~~~~~~p~~~~ 158 (379)
......... ....|..+.++|||..++... .++.|.+--+.....- .+..... ......+..++|.+++.+
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L 179 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL 179 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence 222211111 122899999999999888776 2567777655433211 1111111 233468899999999987
Q ss_pred EEEeeCCC
Q 016982 159 LATTSTDG 166 (379)
Q Consensus 159 l~~~~~d~ 166 (379)
++.+...+
T Consensus 180 ~V~~~~~~ 187 (253)
T PF10647_consen 180 VVLGRSAG 187 (253)
T ss_pred EEEeCCCC
Confidence 77666544
No 375
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.74 E-value=0.002 Score=51.21 Aligned_cols=190 Identities=11% Similarity=0.127 Sum_probs=111.3
Q ss_pred EeCCCCcEEEEEec-----CCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeC-----------------
Q 016982 17 AWSPDHAMVAFCPN-----NNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSH----------------- 74 (379)
Q Consensus 17 ~~s~~~~~l~~~~~-----dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------------- 74 (379)
.|||||.+|...-+ -|.|-|||...+ +..+-.+..|.-.-..+.|.+||+.++.+..
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~-fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNlds 198 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREG-FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDS 198 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccc-cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhh
Confidence 58999998876533 378999999854 6788888888877889999999999887642
Q ss_pred -CCeEEEEeccCCceeeeEEee--cCCCceeEEEECCCCCEEEEEeCCCeE-----EEEEeecCCceeEEEEEe------
Q 016982 75 -DRNSYVWNQEGSEWVPTLVIL--RLNRAALCVQWSPKENKFAVGSGAKTV-----CICYYEQENNWWVSKLIR------ 140 (379)
Q Consensus 75 -d~~i~vw~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~v-----~i~~~~~~~~~~~~~~~~------ 140 (379)
.-.+.+.|..+++.+....+. .+.-.+..++..+||..++-+-..|.- -+=....++. .+.+.
T Consensus 199 MePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~---l~~~~~pee~~ 275 (366)
T COG3490 199 MEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEP---LEFLDLPEEQT 275 (366)
T ss_pred cCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCc---CcccCCCHHHH
Confidence 112444554555544443332 244567888888888876665433221 0100111111 11110
Q ss_pred ecCCcCEEEEEEcCCCcEEEEee-CCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEE
Q 016982 141 KRHDSSVTSVAWHPNNVFLATTS-TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTL 219 (379)
Q Consensus 141 ~~~~~~v~~~~~~p~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 219 (379)
......|-+++.+.+..+++..+ ..+...+||. .++..+..-.. .....++-. ..-+
T Consensus 276 ~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da------------------~tG~vv~~a~l--~daaGva~~--~~gf 333 (366)
T COG3490 276 AAFANYIGSIAANRRDGLVALTSPRGNRAVIWDA------------------ATGAVVSEAAL--PDAAGVAAA--KGGF 333 (366)
T ss_pred HHHHhhhhheeecccCCeEEEecCCCCeEEEEEc------------------CCCcEEecccc--cccccceec--cCce
Confidence 11234566777776555555444 4556778996 56665543221 112233333 2335
Q ss_pred EEEcCCCeEEEEE
Q 016982 220 AYVGHNSMIYFVD 232 (379)
Q Consensus 220 ~~~~~d~~i~v~d 232 (379)
+..+.+|.+.++.
T Consensus 334 ~vssg~G~~~~~s 346 (366)
T COG3490 334 AVSSGQGRIIFYS 346 (366)
T ss_pred EEecCCceEEecc
Confidence 6667788888874
No 376
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.72 E-value=0.0055 Score=56.07 Aligned_cols=191 Identities=14% Similarity=0.097 Sum_probs=107.0
Q ss_pred CCcEEEEEecC------CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC------CeEEEEeccCCce
Q 016982 21 DHAMVAFCPNN------NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD------RNSYVWNQEGSEW 88 (379)
Q Consensus 21 ~~~~l~~~~~d------g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~vw~~~~~~~ 88 (379)
.+.+++.|+.+ ..+..||..++.|.....+..... -.+++.. ++...++|+.| .++..||..++++
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~-~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRC-RVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccc-cccEEEE-CCEEEEEccccCCCcccceEEEecCCCCce
Confidence 45677888776 368899999887877777764333 3444444 35667888888 3578899988887
Q ss_pred eeeEEeecCCCceeEEEECCCCCEEEEEeCCCe-----EEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee
Q 016982 89 VPTLVILRLNRAALCVQWSPKENKFAVGSGAKT-----VCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS 163 (379)
Q Consensus 89 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-----v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 163 (379)
...-.............+ +|...++|+.||. +-.||..+.+ |...... .......-.+.+ +|+..++|+
T Consensus 362 ~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~-W~~va~m-~~~r~~~gv~~~--~g~iYi~GG 435 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNK-WTPVAPM-LTRRSGHGVAVL--GGKLYIIGG 435 (571)
T ss_pred eccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCc-ccccCCC-CcceeeeEEEEE--CCEEEEEcC
Confidence 663322221221111112 5888899998865 4456555543 3222222 111222222223 678888888
Q ss_pred CCC------eEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCC-----eEEEEE
Q 016982 164 TDG------KCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNS-----MIYFVD 232 (379)
Q Consensus 164 ~d~------~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-----~i~v~d 232 (379)
.++ .+..||... .....+..+........ ++ .-++.+.+.|+.|+ +|..||
T Consensus 436 ~~~~~~~l~sve~YDP~t----------------~~W~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~yd 497 (571)
T KOG4441|consen 436 GDGSSNCLNSVECYDPET----------------NTWTLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYD 497 (571)
T ss_pred cCCCccccceEEEEcCCC----------------CceeecCCcccccccce-EE-EECCEEEEECCccCCCccceEEEEc
Confidence 654 456676421 22233333322222222 22 22577777787665 377788
Q ss_pred CCCCC
Q 016982 233 DVGPS 237 (379)
Q Consensus 233 ~~~~~ 237 (379)
..+.+
T Consensus 498 p~~~~ 502 (571)
T KOG4441|consen 498 PETNQ 502 (571)
T ss_pred CCCCc
Confidence 77654
No 377
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.035 Score=48.41 Aligned_cols=237 Identities=15% Similarity=0.138 Sum_probs=141.0
Q ss_pred ceeEEEeCCCCcEEEEEe-cCCeEEEEEecCCceEEEEE-eccCCCceEEEEEcCCCCEE-EEEeCCCeEEEEeccCCce
Q 016982 12 CITCHAWSPDHAMVAFCP-NNNEVHIYKLIQEKWEKLHV-LQKHDQIVSGIDWSVRSNRI-VTVSHDRNSYVWNQEGSEW 88 (379)
Q Consensus 12 ~i~~~~~s~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~vw~~~~~~~ 88 (379)
....+...+++..+.... ....+...+.... .... ...-...-..++.++.+..+ ++...++.|.+.|......
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n---~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~ 108 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSN---TVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV 108 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccc---eeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccce
Confidence 455677778885444332 2224555444421 2111 11111233567888888755 4444568899999777765
Q ss_pred eeeEEeecCCCceeEEEECCCCCEEEEEeC---CCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee-C
Q 016982 89 VPTLVILRLNRAALCVQWSPKENKFAVGSG---AKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS-T 164 (379)
Q Consensus 89 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~ 164 (379)
...... ......++++|+++.+.++.. ++.+.+.|-.+.. +.... ..-..+ ..++++|+++.+.... .
T Consensus 109 ~~~~~v---G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~---~~~~~-~vG~~P-~~~a~~p~g~~vyv~~~~ 180 (381)
T COG3391 109 LGSIPV---GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK---VTATI-PVGNTP-TGVAVDPDGNKVYVTNSD 180 (381)
T ss_pred eeEeee---ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCe---EEEEE-ecCCCc-ceEEECCCCCeEEEEecC
Confidence 444432 236788999999988777765 5777777766665 23333 222233 8899999998665554 6
Q ss_pred CCeEEEEeccccccccccccCCCccCCcccceEE-----EeecCCcceEEEEECCCCCEEEEEcCC---CeEEEEECCCC
Q 016982 165 DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQIL-----QLDLSFSWAFGVKWSPSGNTLAYVGHN---SMIYFVDDVGP 236 (379)
Q Consensus 165 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~sp~~~~l~~~~~d---~~i~v~d~~~~ 236 (379)
++.+.+.|.. ...... .... ......+.++|+|.++...... +.+...|..++
T Consensus 181 ~~~v~vi~~~------------------~~~v~~~~~~~~~~~-~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~ 241 (381)
T COG3391 181 DNTVSVIDTS------------------GNSVVRGSVGSLVGV-GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATG 241 (381)
T ss_pred CCeEEEEeCC------------------Ccceecccccccccc-CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCc
Confidence 8899999852 111111 1111 2234678999999976665433 58999998876
Q ss_pred CceeeeeeeecCCeeeEEEecCCcEEEEEe--CCCeEEEEecCC
Q 016982 237 SPLAQNVAFRDLPLRDVLFVSEKMVIGVGF--DCNPMVFAADET 278 (379)
Q Consensus 237 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--d~~~~i~~~~~~ 278 (379)
................+..+|+|..+.... .+.+.+.+....
T Consensus 242 ~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 242 NVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred eEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 533221221111456789999998777443 345555554443
No 378
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.65 E-value=0.04 Score=49.90 Aligned_cols=53 Identities=8% Similarity=-0.063 Sum_probs=33.5
Q ss_pred CCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeee--EEEecCCcEEEEEeCCC
Q 016982 215 SGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRD--VLFVSEKMVIGVGFDCN 269 (379)
Q Consensus 215 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~--~~~s~~~~~l~~~~d~~ 269 (379)
.+..|++++.||.|+.+|..+++.+ ...+. ...+.. +.+..+|++.++..++.
T Consensus 405 ~g~~v~~g~~dG~l~ald~~tG~~l-W~~~~-~~~~~a~P~~~~~~g~~yv~~~~g~ 459 (488)
T cd00216 405 AGNLVFAGAADGYFRAFDATTGKEL-WKFRT-PSGIQATPMTYEVNGKQYVGVMVGG 459 (488)
T ss_pred cCCeEEEECCCCeEEEEECCCCcee-eEEEC-CCCceEcCEEEEeCCEEEEEEEecC
Confidence 4677888899999999999998754 33332 223222 33455676665544443
No 379
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.61 E-value=0.026 Score=46.00 Aligned_cols=155 Identities=15% Similarity=0.132 Sum_probs=91.1
Q ss_pred ceEEEEEcCCCCEEEEEe---CCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEe-ecCC
Q 016982 56 IVSGIDWSVRSNRIVTVS---HDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYY-EQEN 131 (379)
Q Consensus 56 ~v~~~~~~~~~~~l~~~~---~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~-~~~~ 131 (379)
.+.+.+++++++.++... ....+.++...... .... ....+....|++++...++...+...+++.. ..+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~--~~~~---~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV--RPVL---TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc--eeec---cCCccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 688999999998877665 33345555544332 2221 2347888899999887777776666666532 2222
Q ss_pred ceeEEEEEeec-CCcCEEEEEEcCCCcEEEEee---CCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcce
Q 016982 132 NWWVSKLIRKR-HDSSVTSVAWHPNNVFLATTS---TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWA 207 (379)
Q Consensus 132 ~~~~~~~~~~~-~~~~v~~~~~~p~~~~l~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 207 (379)
. ....+... ....|..+.++|||..++... .++.|.+--+. ......+ ......+.........+
T Consensus 100 ~--~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~-----r~~~g~~----~~l~~~~~~~~~~~~~v 168 (253)
T PF10647_consen 100 G--EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVV-----RDGDGVP----RRLTGPRRVAPPLLSDV 168 (253)
T ss_pred c--eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEE-----eCCCCCc----ceeccceEecccccCcc
Confidence 1 11111111 112899999999998887665 35677766541 1100000 01122222222334578
Q ss_pred EEEEECCCCCEEEEEcCCC
Q 016982 208 FGVKWSPSGNTLAYVGHNS 226 (379)
Q Consensus 208 ~~~~~sp~~~~l~~~~~d~ 226 (379)
..++|.+++.+++.+...+
T Consensus 169 ~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 169 TDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred eeeeecCCCEEEEEeCCCC
Confidence 9999999999887766443
No 380
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.60 E-value=0.043 Score=48.28 Aligned_cols=30 Identities=30% Similarity=0.480 Sum_probs=27.0
Q ss_pred CcCEEEEEEcCCCcEEEEeeCCCeEEEEec
Q 016982 144 DSSVTSVAWHPNNVFLATTSTDGKCRVFST 173 (379)
Q Consensus 144 ~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~ 173 (379)
.+++..++.||+++++|.-..+|.+.+...
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ss 245 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSS 245 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEEC
Confidence 468999999999999999999999988874
No 381
>PRK13684 Ycf48-like protein; Provisional
Probab=97.59 E-value=0.037 Score=47.27 Aligned_cols=241 Identities=11% Similarity=0.119 Sum_probs=119.9
Q ss_pred CcceeEEEeCCCCcEEEEEecCCeEEEEEecCC--ceEEEEE-eccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCC
Q 016982 10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQE--KWEKLHV-LQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGS 86 (379)
Q Consensus 10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~--~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~ 86 (379)
...+++|+|....+-+|+|. +|.| |...++ .|+.... +.....++.++.|.++ ..+++ +..+.|..- -+.+
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~i--l~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i~~S-~DgG 118 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRTL--LETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLLLHT-TDGG 118 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCEE--EEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceEEEE-CCCC
Confidence 56889999986666677764 4543 433332 3444321 1112335778888643 33443 444543332 1222
Q ss_pred -ceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCC
Q 016982 87 -EWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTD 165 (379)
Q Consensus 87 -~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d 165 (379)
.+...............+.....+..++ ++..|.|.. ..+.++.|.... ......+.++.+.|++.+++++. .
T Consensus 119 ~tW~~~~~~~~~~~~~~~i~~~~~~~~~~-~g~~G~i~~-S~DgG~tW~~~~---~~~~g~~~~i~~~~~g~~v~~g~-~ 192 (334)
T PRK13684 119 KNWTRIPLSEKLPGSPYLITALGPGTAEM-ATNVGAIYR-TTDGGKNWEALV---EDAAGVVRNLRRSPDGKYVAVSS-R 192 (334)
T ss_pred CCCeEccCCcCCCCCceEEEEECCCccee-eeccceEEE-ECCCCCCceeCc---CCCcceEEEEEECCCCeEEEEeC-C
Confidence 2222110000111112222222223333 344454422 223344443221 23356788999999887766654 4
Q ss_pred CeEEE-EeccccccccccccCCCccCCcccceEEEe-ecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeee
Q 016982 166 GKCRV-FSTFIKGVDIKEKKEGTSSDTKFGEQILQL-DLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNV 243 (379)
Q Consensus 166 ~~i~v-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 243 (379)
|.+.. ++- .++..... ......++.+.+.|+++.++++ ..|.+.+=....+..- +..
T Consensus 193 G~i~~s~~~-------------------gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW-~~~ 251 (334)
T PRK13684 193 GNFYSTWEP-------------------GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW-SKP 251 (334)
T ss_pred ceEEEEcCC-------------------CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc-ccc
Confidence 54432 221 11111111 1224568899999999877765 5576643222332211 111
Q ss_pred ee----ecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEEE
Q 016982 244 AF----RDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFI 284 (379)
Q Consensus 244 ~~----~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~~ 284 (379)
.. ....+.++.+.+++.+++++.++.+. ...+....|+..
T Consensus 252 ~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~ 295 (334)
T PRK13684 252 IIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKD 295 (334)
T ss_pred cCCccccccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeEC
Confidence 11 12357889999999988888776554 566666677753
No 382
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.58 E-value=0.04 Score=47.36 Aligned_cols=203 Identities=8% Similarity=0.013 Sum_probs=92.8
Q ss_pred CCcEEEEEe-cCCeEEEEEecCC--ceEEEEEecc---CC----CceEEEEEcCCCCEEEEEe--CC----CeEEEEecc
Q 016982 21 DHAMVAFCP-NNNEVHIYKLIQE--KWEKLHVLQK---HD----QIVSGIDWSVRSNRIVTVS--HD----RNSYVWNQE 84 (379)
Q Consensus 21 ~~~~l~~~~-~dg~i~i~~~~~~--~~~~~~~~~~---~~----~~v~~~~~~~~~~~l~~~~--~d----~~i~vw~~~ 84 (379)
+.++|+..+ ..+.|+|+|+.+. +.+..++++. +. ..-..+.--|+|+.++++- .+ |-+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456776665 6789999999853 2344444442 11 1223444557888887753 22 457888887
Q ss_pred CCceeeeEEeecC-CCceeEEEECCCCCEEEEEe--------------------CCCeEEEEEeecCCceeEEEEEeecC
Q 016982 85 GSEWVPTLVILRL-NRAALCVQWSPKENKFAVGS--------------------GAKTVCICYYEQENNWWVSKLIRKRH 143 (379)
Q Consensus 85 ~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~--------------------~d~~v~i~~~~~~~~~~~~~~~~~~~ 143 (379)
+.+.......... ..--..+-|.|..+.+++.. ...++.+||+.+++ ..+.+..+.
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~---~~Q~idLg~ 242 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRK---LLQTIDLGE 242 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTE---EEEEEES-T
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCc---EeeEEecCC
Confidence 7765555533221 23456777888888887764 24679999999988 455553333
Q ss_pred Cc-CEEEEEEcCC--CcE-EEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEee-----------------c
Q 016982 144 DS-SVTSVAWHPN--NVF-LATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD-----------------L 202 (379)
Q Consensus 144 ~~-~v~~~~~~p~--~~~-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~ 202 (379)
.+ ....+.|..+ ..+ ++.+.-.++|..|--.. .-+ -..+.+..+. .
T Consensus 243 ~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~-~g~------------W~a~kVi~ip~~~v~~~~lp~ml~~~~~ 309 (461)
T PF05694_consen 243 EGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDD-DGE------------WAAEKVIDIPAKKVEGWILPEMLKPFGA 309 (461)
T ss_dssp TEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-E-TTE------------EEEEEEEEE--EE--SS---GGGGGG-E
T ss_pred CCCceEEEEecCCCCccceEEEEeccceEEEEEEcC-CCC------------eeeeEEEECCCcccCccccccccccccc
Confidence 32 3456666544 333 33333344454443200 000 0011111111 1
Q ss_pred CCcceEEEEECCCCCEEEEEc-CCCeEEEEECCCCCce
Q 016982 203 SFSWAFGVKWSPSGNTLAYVG-HNSMIYFVDDVGPSPL 239 (379)
Q Consensus 203 ~~~~v~~~~~sp~~~~l~~~~-~d~~i~v~d~~~~~~~ 239 (379)
-..-|+.+..|.|.++|..++ .+|.|+.||+..+...
T Consensus 310 ~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~P 347 (461)
T PF05694_consen 310 VPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNP 347 (461)
T ss_dssp E------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-
T ss_pred CCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCC
Confidence 123478999999999988766 7899999999886543
No 383
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.54 E-value=0.00039 Score=39.29 Aligned_cols=34 Identities=24% Similarity=0.682 Sum_probs=30.4
Q ss_pred eccCcceeEEEeCCCCcEEEEEecCCeEEEEEec
Q 016982 7 HQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLI 40 (379)
Q Consensus 7 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~ 40 (379)
+.....|.+++|+|...+||.+..+|.|.+|.+.
T Consensus 8 k~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 8 KNLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred cCCCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3346789999999999999999999999999984
No 384
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.49 E-value=0.051 Score=46.24 Aligned_cols=233 Identities=15% Similarity=0.156 Sum_probs=110.2
Q ss_pred eeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEE--cCCCCEEEEEe---C-------------
Q 016982 13 ITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDW--SVRSNRIVTVS---H------------- 74 (379)
Q Consensus 13 i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~---~------------- 74 (379)
.....++|+.+.++.......|+-.|+.+.+.+.+..++ ...+-...| +.++.+++-.- .
T Consensus 83 ~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p--~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e 160 (386)
T PF14583_consen 83 TFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP--DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFRE 160 (386)
T ss_dssp TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE----TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHH
T ss_pred ccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC--cccccccceeeCCCccEEEEEEEeehhccCccccHHHHH
Confidence 335667788888877666678888899887545555554 444444555 44555554321 1
Q ss_pred ------CCeEEEEeccCCceeeeEEeecCCCceeEEEECC-CCCEEEEEeC---CCe-EEEEEeecCCceeEEEEEe-ec
Q 016982 75 ------DRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSP-KENKFAVGSG---AKT-VCICYYEQENNWWVSKLIR-KR 142 (379)
Q Consensus 75 ------d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~---d~~-v~i~~~~~~~~~~~~~~~~-~~ 142 (379)
...|.--|+.+++....+ .....+..+.|+| |...|+.|-+ +.. -+||-+++... -.+.+. ..
T Consensus 161 ~~~a~p~~~i~~idl~tG~~~~v~---~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~--~~~~v~~~~ 235 (386)
T PF14583_consen 161 FYEARPHCRIFTIDLKTGERKVVF---EDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS--NVKKVHRRM 235 (386)
T ss_dssp HHHC---EEEEEEETTT--EEEEE---EESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-----EESS---
T ss_pred HHhhCCCceEEEEECCCCceeEEE---ecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC--cceeeecCC
Confidence 123555677777744443 3456778999999 4556666543 332 36787776542 122221 11
Q ss_pred CCcCEEEEEEcCCCcEEEEeeC-----CCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCC
Q 016982 143 HDSSVTSVAWHPNNVFLATTST-----DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGN 217 (379)
Q Consensus 143 ~~~~v~~~~~~p~~~~l~~~~~-----d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 217 (379)
....+..=-|.|||..+..-+. +..|.-+|+ .+++....... .+...+--++||+
T Consensus 236 ~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~------------------~t~~~~~~~~~--p~~~H~~ss~Dg~ 295 (386)
T PF14583_consen 236 EGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDP------------------DTGERRRLMEM--PWCSHFMSSPDGK 295 (386)
T ss_dssp TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-T------------------TT--EEEEEEE---SEEEEEE-TTSS
T ss_pred CCcccccccccCCCCEEEEEeecCCCCceEEEeeCC------------------CCCCceEEEeC--CceeeeEEcCCCC
Confidence 2233444568899876654222 233444443 22322211111 1244666678998
Q ss_pred EEEEEcCC----------------CeEEEEECCCCCceeeeeeeecC-----------CeeeEEEecCCcEEE--EEeCC
Q 016982 218 TLAYVGHN----------------SMIYFVDDVGPSPLAQNVAFRDL-----------PLRDVLFVSEKMVIG--VGFDC 268 (379)
Q Consensus 218 ~l~~~~~d----------------~~i~v~d~~~~~~~~~~~~~~~~-----------~i~~~~~s~~~~~l~--~~~d~ 268 (379)
+++-=+.| --|+++++..+.. ..+..|.. .=..+.|+|||+.|+ +...|
T Consensus 296 L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~--~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G 373 (386)
T PF14583_consen 296 LFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRF--RKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEG 373 (386)
T ss_dssp EEEEEE-------------------EEEEEETTTTEE--EEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTS
T ss_pred EEEecCCCCCccccccccceecCCcEEEEeccccCce--eeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCC
Confidence 77542222 1466677765432 22222211 124689999999887 44556
Q ss_pred CeEEEE
Q 016982 269 NPMVFA 274 (379)
Q Consensus 269 ~~~i~~ 274 (379)
...||-
T Consensus 374 ~~~vY~ 379 (386)
T PF14583_consen 374 PPAVYL 379 (386)
T ss_dssp S-EEEE
T ss_pred CccEEE
Confidence 666654
No 385
>PHA02713 hypothetical protein; Provisional
Probab=97.46 E-value=0.019 Score=52.77 Aligned_cols=125 Identities=11% Similarity=0.096 Sum_probs=65.3
Q ss_pred eEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC------CeEEEEeccCCceeeeEEeecCCCceeEEEE
Q 016982 33 EVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD------RNSYVWNQEGSEWVPTLVILRLNRAALCVQW 106 (379)
Q Consensus 33 ~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~ 106 (379)
.+..||..+++|..+..++..... .+++. -++...+.|+.+ ..+..||..++.+...-...........+
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~-- 348 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA-- 348 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE--
Confidence 577899988877766655433221 22222 245566677643 34778898887654322111111111222
Q ss_pred CCCCCEEEEEeCCC-----eEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCC
Q 016982 107 SPKENKFAVGSGAK-----TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTD 165 (379)
Q Consensus 107 ~~~~~~l~~~~~d~-----~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d 165 (379)
.-+|+..+.|+.++ .+..||..+.. |.....+ .........+.. +++..+.|+.+
T Consensus 349 ~~~g~IYviGG~~~~~~~~sve~Ydp~~~~-W~~~~~m-p~~r~~~~~~~~--~g~IYviGG~~ 408 (557)
T PHA02713 349 VIDDTIYAIGGQNGTNVERTIECYTMGDDK-WKMLPDM-PIALSSYGMCVL--DQYIYIIGGRT 408 (557)
T ss_pred EECCEEEEECCcCCCCCCceEEEEECCCCe-EEECCCC-CcccccccEEEE--CCEEEEEeCCC
Confidence 22577778888654 36778776553 3332222 111111122222 67888888765
No 386
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.38 E-value=0.014 Score=53.41 Aligned_cols=145 Identities=12% Similarity=0.180 Sum_probs=83.9
Q ss_pred CCcEEEEEecC------CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCe-----EEEEeccCCcee
Q 016982 21 DHAMVAFCPNN------NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRN-----SYVWNQEGSEWV 89 (379)
Q Consensus 21 ~~~~l~~~~~d------g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-----i~vw~~~~~~~~ 89 (379)
++.+.++|+.| ..+..||..+++|..+..+............ +|...++|+.||. +..||..+.++.
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~ 409 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWT 409 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCccc
Confidence 45778888888 3688899998888776666554433322322 4667788888864 888998888765
Q ss_pred eeEEeecCCCceeEEEECCCCCEEEEEeCCC------eEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee
Q 016982 90 PTLVILRLNRAALCVQWSPKENKFAVGSGAK------TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS 163 (379)
Q Consensus 90 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~------~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 163 (379)
..-.........-.+.+ +|...++|+.++ ++..||..++. |...... ........ ++.. ++.+.+.|+
T Consensus 410 ~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~-W~~~~~M-~~~R~~~g-~a~~-~~~iYvvGG 483 (571)
T KOG4441|consen 410 PVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNT-WTLIAPM-NTRRSGFG-VAVL-NGKIYVVGG 483 (571)
T ss_pred ccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCc-eeecCCc-ccccccce-EEEE-CCEEEEECC
Confidence 44322111122222222 577888888654 35566665554 3222222 11111112 2222 678888888
Q ss_pred CCCe-----EEEEec
Q 016982 164 TDGK-----CRVFST 173 (379)
Q Consensus 164 ~d~~-----i~v~d~ 173 (379)
.|+. +..||.
T Consensus 484 ~~~~~~~~~VE~ydp 498 (571)
T KOG4441|consen 484 FDGTSALSSVERYDP 498 (571)
T ss_pred ccCCCccceEEEEcC
Confidence 7763 556664
No 387
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.38 E-value=0.0084 Score=56.51 Aligned_cols=105 Identities=9% Similarity=0.131 Sum_probs=74.2
Q ss_pred CCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCC-C
Q 016982 21 DHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLN-R 99 (379)
Q Consensus 21 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~-~ 99 (379)
.+..++.|+..|.+...|+.++ ..+...-..-.++|++++|+.+|..++.|-.+|.|.+||+..++....+...+++ .
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 3456888888899999888764 2222222334679999999999999999999999999999998877766443322 2
Q ss_pred ceeEEEECCCCCEEEEEeCCCeEEEEEee
Q 016982 100 AALCVQWSPKENKFAVGSGAKTVCICYYE 128 (379)
Q Consensus 100 ~v~~~~~~~~~~~l~~~~~d~~v~i~~~~ 128 (379)
.+..+.+..++..+.++...|. +|.+.
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 3444455556667777776665 45543
No 388
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.36 E-value=0.00027 Score=54.14 Aligned_cols=140 Identities=11% Similarity=0.026 Sum_probs=74.0
Q ss_pred EEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEE-
Q 016982 71 TVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTS- 149 (379)
Q Consensus 71 ~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~- 149 (379)
.-+.|+.|.-+++...+....-.. -+... .....-+..+++|+.+|.|.+|+.+.... ..... ..-...+.+
T Consensus 35 ~~sa~~~v~~~~~~k~k~s~rse~-~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~--~~d~~-~s~~e~i~~~ 107 (238)
T KOG2444|consen 35 ATSADGLVRERKVRKHKESCRSER-FIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGA--HSDRV-CSGEESIDLG 107 (238)
T ss_pred cccCCcccccchhhhhhhhhhhhh-hhhcc---eeecccCceEEeecccceEEEecCCccch--HHHhh-hcccccceec
Confidence 345677777776654331111110 01111 11222356799999999999998874321 11111 112222222
Q ss_pred EEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCC-cceEEEEECCCCCEEEEE--cCCC
Q 016982 150 VAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSF-SWAFGVKWSPSGNTLAYV--GHNS 226 (379)
Q Consensus 150 ~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~--~~d~ 226 (379)
+.--.++.+..++..+|.|+.|++ ...+.+-....|. .++..+..+..++.++++ |.|.
T Consensus 108 Ip~~~~~~~~c~~~~dg~ir~~n~------------------~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~ 169 (238)
T KOG2444|consen 108 IPNGRDSSLGCVGAQDGRIRACNI------------------KPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDR 169 (238)
T ss_pred cccccccceeEEeccCCceeeecc------------------ccCceeeeeccccCCCcceeEEecCCceEEeeccccch
Confidence 222334567888999999999987 3444444444444 344444444455555555 5566
Q ss_pred eEEEEECCC
Q 016982 227 MIYFVDDVG 235 (379)
Q Consensus 227 ~i~v~d~~~ 235 (379)
.++.|++..
T Consensus 170 ~~k~W~ve~ 178 (238)
T KOG2444|consen 170 VLKKWNVEK 178 (238)
T ss_pred hhhhcchhh
Confidence 666666543
No 389
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.0084 Score=52.02 Aligned_cols=140 Identities=10% Similarity=-0.010 Sum_probs=90.3
Q ss_pred EEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCc-------EEEEeeCCCeEEEEeccccccccccccCC
Q 016982 114 AVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNV-------FLATTSTDGKCRVFSTFIKGVDIKEKKEG 186 (379)
Q Consensus 114 ~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-------~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 186 (379)
..+.....++-.|++.++ +.... .-+.. |.-+.+.|+.+ .-+.|-.+..|.-||.+.+..
T Consensus 350 ~~~~~~~~l~klDIE~GK---IVeEW-k~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~-------- 416 (644)
T KOG2395|consen 350 MDGGEQDKLYKLDIERGK---IVEEW-KFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK-------- 416 (644)
T ss_pred eCCCCcCcceeeecccce---eeeEe-eccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc--------
Confidence 344445567777888777 44444 33333 77777887652 223466788888898742111
Q ss_pred CccCCcccceEEEeecC----CcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEE
Q 016982 187 TSSDTKFGEQILQLDLS----FSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVI 262 (379)
Q Consensus 187 ~~~~~~~~~~~~~~~~~----~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 262 (379)
..+..-+.| .....|.+-..+| ++++||.+|.|++||- .+..-..-+++-+.+|..+..+.+|++|
T Consensus 417 --------~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwi 486 (644)
T KOG2395|consen 417 --------NKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWI 486 (644)
T ss_pred --------ceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEE
Confidence 112212222 2234555555555 6888999999999995 4444445567778999999999999999
Q ss_pred EEEeCCCeEEEEec
Q 016982 263 GVGFDCNPMVFAAD 276 (379)
Q Consensus 263 ~~~~d~~~~i~~~~ 276 (379)
.+..+..+.+....
T Consensus 487 l~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 487 LATCKTYLLLIDTL 500 (644)
T ss_pred EEecccEEEEEEEe
Confidence 98888877776643
No 390
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.32 E-value=0.014 Score=51.55 Aligned_cols=154 Identities=15% Similarity=0.256 Sum_probs=90.7
Q ss_pred eeccCcceeEEEeCCCCcEEEEE-e--cCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCC----CEEEEEeCCCeE
Q 016982 6 VHQFAQCITCHAWSPDHAMVAFC-P--NNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRS----NRIVTVSHDRNS 78 (379)
Q Consensus 6 ~~~~~~~i~~~~~s~~~~~l~~~-~--~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~d~~i 78 (379)
+++--.+|..++|. ||+.++-. - .+|.+++=| -..+..| ..|..+.|.|-+ ..|+.....+.|
T Consensus 15 L~qAiHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd-----s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhV 84 (671)
T PF15390_consen 15 LHQAIHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD-----SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHV 84 (671)
T ss_pred HHhhhccccceEec-CCCEEEEEeeeeeCCccccCC-----ccEeecc----ceeeeeeecCcccCCCCceEEEeccceE
Confidence 44455789999997 66655432 1 233333211 1233333 358899999864 245555667889
Q ss_pred EEEeccC-----CceeeeE--Eee-cCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEE
Q 016982 79 YVWNQEG-----SEWVPTL--VIL-RLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSV 150 (379)
Q Consensus 79 ~vw~~~~-----~~~~~~~--~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~ 150 (379)
.+|.+.- .++.... ++. ...--...+.|+|....|++-.....-.++++...... .+.- ....+.|.|.
T Consensus 85 tVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~sr--VkaD-i~~~G~IhCA 161 (671)
T PF15390_consen 85 TVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSR--VKAD-IKTSGLIHCA 161 (671)
T ss_pred EEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCce--EEEe-ccCCceEEEE
Confidence 9999862 2221111 100 01112356789999988888776555456677665531 1111 3567889999
Q ss_pred EEcCCCcEEEEee-CCCeEEEEe
Q 016982 151 AWHPNNVFLATTS-TDGKCRVFS 172 (379)
Q Consensus 151 ~~~p~~~~l~~~~-~d~~i~v~d 172 (379)
+|.+||++|+++- ..=.-++||
T Consensus 162 CWT~DG~RLVVAvGSsLHSyiWd 184 (671)
T PF15390_consen 162 CWTKDGQRLVVAVGSSLHSYIWD 184 (671)
T ss_pred EecCcCCEEEEEeCCeEEEEEec
Confidence 9999998776543 333456777
No 391
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.02 Score=54.09 Aligned_cols=101 Identities=20% Similarity=0.243 Sum_probs=72.3
Q ss_pred CCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCc
Q 016982 66 SNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDS 145 (379)
Q Consensus 66 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~ 145 (379)
+-.++.|+..|.+...|+.+. ..+...-....++|++++|+.+|..++.|-.+|.|.+||+..++ ..+.+ ..|..
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k---~l~~i-~e~~a 173 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAK---ILKVI-TEHGA 173 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCc---ceeee-eecCC
Confidence 457888888899998887764 12222223456899999999999999999999999999999877 35555 44444
Q ss_pred CEEE---EEEcCCCcEEEEeeCCCeEEEEec
Q 016982 146 SVTS---VAWHPNNVFLATTSTDGKCRVFST 173 (379)
Q Consensus 146 ~v~~---~~~~p~~~~l~~~~~d~~i~v~d~ 173 (379)
+... +.+..++..++++...|. +|.+
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 4333 344445566777777776 6765
No 392
>PHA03098 kelch-like protein; Provisional
Probab=97.26 E-value=0.028 Score=51.65 Aligned_cols=145 Identities=13% Similarity=0.148 Sum_probs=73.7
Q ss_pred CCcEEEEEecCC------eEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC-----CeEEEEeccCCcee
Q 016982 21 DHAMVAFCPNNN------EVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD-----RNSYVWNQEGSEWV 89 (379)
Q Consensus 21 ~~~~l~~~~~dg------~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~vw~~~~~~~~ 89 (379)
++..++.|+.++ .+..||..+++|.....+.........+.+ +++..+.|+.+ ..+..||..++++.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 455667776532 577889888877655444322222222222 46666777754 34778898887765
Q ss_pred eeEEeecCCCceeEEEECCCCCEEEEEeCC------CeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee
Q 016982 90 PTLVILRLNRAALCVQWSPKENKFAVGSGA------KTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS 163 (379)
Q Consensus 90 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 163 (379)
..-.. .....-.+++ .-+++.++.|+.+ ..+..||..+.. |.....+.... ... ++. ..+++.++.|+
T Consensus 372 ~~~~l-p~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~p~~r-~~~-~~~-~~~~~iyv~GG 445 (534)
T PHA03098 372 EEPPL-IFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNK-WSKGSPLPISH-YGG-CAI-YHDGKIYVIGG 445 (534)
T ss_pred eCCCc-CcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCe-eeecCCCCccc-cCc-eEE-EECCEEEEECC
Confidence 43211 1111111222 2256677777632 346777776543 32222221111 111 222 23567777776
Q ss_pred CCC--------eEEEEec
Q 016982 164 TDG--------KCRVFST 173 (379)
Q Consensus 164 ~d~--------~i~v~d~ 173 (379)
.+. .+.+||.
T Consensus 446 ~~~~~~~~~~~~v~~yd~ 463 (534)
T PHA03098 446 ISYIDNIKVYNIVESYNP 463 (534)
T ss_pred ccCCCCCcccceEEEecC
Confidence 432 3677775
No 393
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.23 E-value=0.011 Score=51.42 Aligned_cols=142 Identities=15% Similarity=0.135 Sum_probs=92.0
Q ss_pred CCEE-EEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCC-------EEEEEeCCCeEEEEEeecCCce----
Q 016982 66 SNRI-VTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKEN-------KFAVGSGAKTVCICYYEQENNW---- 133 (379)
Q Consensus 66 ~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~d~~v~i~~~~~~~~~---- 133 (379)
.++| .++.....++-.|++.|+.+....+ ...|.-+.+.|+.+ .-++|-.|..|.-||.+-....
T Consensus 345 snlil~~~~~~~~l~klDIE~GKIVeEWk~---~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~ 421 (644)
T KOG2395|consen 345 SNLILMDGGEQDKLYKLDIERGKIVEEWKF---EDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV 421 (644)
T ss_pred cceEeeCCCCcCcceeeecccceeeeEeec---cCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence 3444 3444456688889999987776654 33477777887643 2345666888888998755421
Q ss_pred eEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceE-EEeecCCcceEEEEE
Q 016982 134 WVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQI-LQLDLSFSWAFGVKW 212 (379)
Q Consensus 134 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~ 212 (379)
...+. ........|.+-..+| ++++|+.+|.|++||- .+... ..+++-..+|..+..
T Consensus 422 ~q~kq--y~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-------------------i~~~AKTAlPgLG~~I~hVdv 479 (644)
T KOG2395|consen 422 VQSKQ--YSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-------------------IGRRAKTALPGLGDAIKHVDV 479 (644)
T ss_pred eeccc--cccccccceeeecCCc-eEEEeecCCcEEeehh-------------------hhhhhhhcccccCCceeeEEe
Confidence 11111 1223345566655444 7999999999999982 23222 235566788999999
Q ss_pred CCCCCEEEEEcCCCeEEEEEC
Q 016982 213 SPSGNTLAYVGHNSMIYFVDD 233 (379)
Q Consensus 213 sp~~~~l~~~~~d~~i~v~d~ 233 (379)
+.+|++++..+ +..+.+.++
T Consensus 480 tadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 480 TADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eccCcEEEEec-ccEEEEEEE
Confidence 99999987654 556666654
No 394
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.19 E-value=0.13 Score=44.43 Aligned_cols=156 Identities=15% Similarity=0.191 Sum_probs=79.1
Q ss_pred EeCCCCcEEEEEe--c----CCeEEEEEecCCceEEEEEeccC---CCceEEEEEcCCCCEEEEEeC-------------
Q 016982 17 AWSPDHAMVAFCP--N----NNEVHIYKLIQEKWEKLHVLQKH---DQIVSGIDWSVRSNRIVTVSH------------- 74 (379)
Q Consensus 17 ~~s~~~~~l~~~~--~----dg~i~i~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~------------- 74 (379)
-.-|+|+.++++- . -|.+.++|-++ ++........ ...-..+-|.|..+.++|...
T Consensus 136 Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t--f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~ 213 (461)
T PF05694_consen 136 HCLPDGRIMISALGDADGNGPGGFVLLDGET--FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPE 213 (461)
T ss_dssp EE-SS--EEEEEEEETTS-S--EEEEE-TTT----EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TT
T ss_pred eecCCccEEEEeccCCCCCCCCcEEEEcCcc--ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChh
Confidence 3446888887752 2 34566776654 3444444332 223456778888888888642
Q ss_pred -------CCeEEEEeccCCceeeeEEeecCCCceeEEEECC--CCCEEEEEe-CCCeEEEEEeecCCceeEEEEEeecC-
Q 016982 75 -------DRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSP--KENKFAVGS-GAKTVCICYYEQENNWWVSKLIRKRH- 143 (379)
Q Consensus 75 -------d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~~- 143 (379)
..++.+||+.+.+.++.+.+-.....+..+.|.. +..+=++++ -..+|..|--.....|...+.+....
T Consensus 214 d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~ 293 (461)
T PF05694_consen 214 DLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAK 293 (461)
T ss_dssp THHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--E
T ss_pred HhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCc
Confidence 3579999999999888887644444566777754 444434433 34455555443444455444442111
Q ss_pred -----------------CcCEEEEEEcCCCcEEEEee-CCCeEEEEecc
Q 016982 144 -----------------DSSVTSVAWHPNNVFLATTS-TDGKCRVFSTF 174 (379)
Q Consensus 144 -----------------~~~v~~~~~~p~~~~l~~~~-~d~~i~v~d~~ 174 (379)
..-+++|..|.|+++|...+ ..|.++.||+.
T Consensus 294 ~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDIS 342 (461)
T PF05694_consen 294 KVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDIS 342 (461)
T ss_dssp E--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-S
T ss_pred ccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecC
Confidence 24578999999999887766 58999999984
No 395
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=97.13 E-value=0.062 Score=46.69 Aligned_cols=146 Identities=9% Similarity=0.081 Sum_probs=79.9
Q ss_pred cceeEEEeCCCCcEEEEEe-----------cCC-eEEEEEecCC--ceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCC
Q 016982 11 QCITCHAWSPDHAMVAFCP-----------NNN-EVHIYKLIQE--KWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDR 76 (379)
Q Consensus 11 ~~i~~~~~s~~~~~l~~~~-----------~dg-~i~i~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 76 (379)
.....|+|.++|+++++-. ..+ .|.+++-.++ .......+.........+++.+++ .++ +....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence 4567899999999877642 223 7777765432 223334444334456889999988 444 44443
Q ss_pred eEEEEeccCC-----ceeeeEEeec-----CCCceeEEEECCCCCEEEEEeCC-------------------CeEEEEEe
Q 016982 77 NSYVWNQEGS-----EWVPTLVILR-----LNRAALCVQWSPKENKFAVGSGA-------------------KTVCICYY 127 (379)
Q Consensus 77 ~i~vw~~~~~-----~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d-------------------~~v~i~~~ 127 (379)
..++.+.... +....+.... +......+.|.|||.+.++.+.. +.+.-++.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 3334354321 2111111111 12347789999999876654421 22333333
Q ss_pred ecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee
Q 016982 128 EQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS 163 (379)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 163 (379)
+... .+.+..++ .....++|+|+|+++++-.
T Consensus 172 dg~~----~e~~a~G~-rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 172 DGGK----LRVVAHGF-QNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCCe----EEEEecCc-CCCccceECCCCCEEEEcc
Confidence 3322 23332333 3346889999998877644
No 396
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=97.04 E-value=0.029 Score=51.21 Aligned_cols=113 Identities=12% Similarity=0.133 Sum_probs=75.8
Q ss_pred ceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEc--CCCCEEEEEeCCCeEEEEecc-----
Q 016982 12 CITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWS--VRSNRIVTVSHDRNSYVWNQE----- 84 (379)
Q Consensus 12 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~vw~~~----- 84 (379)
.++-+.-|.-++..++-+....+.|||...+..+....+ ...+.|.++.|. |+++.+++.+..+.|.++--.
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 344444455455444444556899999998865665666 346789999995 678899888999999998532
Q ss_pred --CC--ceeeeEEeecCC-CceeEEEECCCCCEEEEEeCCCeEEEEEe
Q 016982 85 --GS--EWVPTLVILRLN-RAALCVQWSPKENKFAVGSGAKTVCICYY 127 (379)
Q Consensus 85 --~~--~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~v~i~~~ 127 (379)
.. ..+..+.+..++ .+|.+..|.++|..++.++ +.+.|++-
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 11 233444444444 6899999999987655544 56777653
No 397
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=97.01 E-value=0.088 Score=48.17 Aligned_cols=121 Identities=9% Similarity=0.088 Sum_probs=76.5
Q ss_pred CceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEc--CCCcEEEEeeCCCeEEEEecccc
Q 016982 99 RAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWH--PNNVFLATTSTDGKCRVFSTFIK 176 (379)
Q Consensus 99 ~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--p~~~~l~~~~~d~~i~v~d~~~~ 176 (379)
..+.-+.-+.-++..++-+....+.|||.+... .+.... ....+.|.++.|. |+++.+++.+....|.+|.-
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~-lE~~~~--f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q--- 103 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGV-LEYEES--FSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ--- 103 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcE-EEEeee--ecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc---
Confidence 445555555555555555555679999998775 111222 2457889999996 57888999999999999963
Q ss_pred ccccccccCCCccCCcccceEEEe--ecCC-cceEEEEECCCCCEEEEEcCCCeEEEEEC
Q 016982 177 GVDIKEKKEGTSSDTKFGEQILQL--DLSF-SWAFGVKWSPSGNTLAYVGHNSMIYFVDD 233 (379)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~v~~~~~sp~~~~l~~~~~d~~i~v~d~ 233 (379)
.|..-... .+...++..+ ..+. .+|.+..|.++|.+++.+ ++.+.|+|-
T Consensus 104 ---~R~dy~~~---~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 104 ---LRYDYTNK---GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred ---cchhhhcC---CcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 22211110 1223344433 2222 578999999999877644 467888873
No 398
>PHA02790 Kelch-like protein; Provisional
Probab=96.98 E-value=0.1 Score=47.17 Aligned_cols=142 Identities=10% Similarity=0.149 Sum_probs=72.9
Q ss_pred CCcEEEEEecC-----CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC--CeEEEEeccCCceeeeEE
Q 016982 21 DHAMVAFCPNN-----NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD--RNSYVWNQEGSEWVPTLV 93 (379)
Q Consensus 21 ~~~~l~~~~~d-----g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~vw~~~~~~~~~~~~ 93 (379)
++.++++|+.+ ..+..||..+++|..+..+.........+. -++...+.|+.+ ..+..||..++++...-.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 44566777654 257788988877766665543322222222 356566667653 357888887776544322
Q ss_pred eecCCCceeEEEECCCCCEEEEEeCCC---eEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEE
Q 016982 94 ILRLNRAALCVQWSPKENKFAVGSGAK---TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRV 170 (379)
Q Consensus 94 ~~~~~~~v~~~~~~~~~~~l~~~~~d~---~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v 170 (379)
..........+ .-+|+..+.|+.++ .+..||.++.. |.....+ .........+. -+++..+.|+ .+.+
T Consensus 349 l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~-W~~~~~m-~~~r~~~~~~~--~~~~IYv~GG---~~e~ 419 (480)
T PHA02790 349 LLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQ-WQFGPST-YYPHYKSCALV--FGRRLFLVGR---NAEF 419 (480)
T ss_pred CCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCE-EEeCCCC-CCccccceEEE--ECCEEEEECC---ceEE
Confidence 11111111122 22577777777543 35667765443 3322222 11111112222 3567677664 4667
Q ss_pred Eec
Q 016982 171 FST 173 (379)
Q Consensus 171 ~d~ 173 (379)
||.
T Consensus 420 ydp 422 (480)
T PHA02790 420 YCE 422 (480)
T ss_pred ecC
Confidence 775
No 399
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.93 E-value=0.098 Score=45.47 Aligned_cols=106 Identities=9% Similarity=0.061 Sum_probs=55.3
Q ss_pred ceEEEEEcCCCCEEEEEe-----------CCC-eEEEEeccC--CceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCe
Q 016982 56 IVSGIDWSVRSNRIVTVS-----------HDR-NSYVWNQEG--SEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKT 121 (379)
Q Consensus 56 ~v~~~~~~~~~~~l~~~~-----------~d~-~i~vw~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 121 (379)
....|+|.++|+.+++-. ..+ .|.+++-.+ +.......+...-.....+++.+++ |+++.....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCeE
Confidence 446889999998776642 123 676665432 2221111222223456889999888 444444433
Q ss_pred EEEEEeecC-----CceeEEEEEeec---CCcCEEEEEEcCCCcEEEEee
Q 016982 122 VCICYYEQE-----NNWWVSKLIRKR---HDSSVTSVAWHPNNVFLATTS 163 (379)
Q Consensus 122 v~i~~~~~~-----~~~~~~~~~~~~---~~~~v~~~~~~p~~~~l~~~~ 163 (379)
.++.+.+.. +...+...+... +......++|.|||++.++-+
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 333343321 111111112111 134477899999998776555
No 400
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.91 E-value=0.22 Score=42.54 Aligned_cols=254 Identities=12% Similarity=0.054 Sum_probs=119.5
Q ss_pred ceeEEEeCCCCcEEEEEecCCeEEEEEecCCce-EEEEEe----ccCCCceEEEEEcCC---CCEEEEEeC-C-------
Q 016982 12 CITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKW-EKLHVL----QKHDQIVSGIDWSVR---SNRIVTVSH-D------- 75 (379)
Q Consensus 12 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~-~~~~~~----~~~~~~v~~~~~~~~---~~~l~~~~~-d------- 75 (379)
..++|+|.|||++|++ ...|.|++++ ..+.. ..+..+ .........++++|+ ..+|..... .
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 4678999999987775 4689999999 33322 233333 223456789999995 234433322 1
Q ss_pred -CeEEEEeccCC--c---eeeeEEeec----CCCceeEEEECCCCCEEEEEeCCCe-----------EEEEEeecCCce-
Q 016982 76 -RNSYVWNQEGS--E---WVPTLVILR----LNRAALCVQWSPKENKFAVGSGAKT-----------VCICYYEQENNW- 133 (379)
Q Consensus 76 -~~i~vw~~~~~--~---~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d~~-----------v~i~~~~~~~~~- 133 (379)
..|.-|....+ . ....+.... .......|.|.|||.+.++.+..+. =+|+.++.....
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p 160 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP 160 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence 23544555443 1 111111111 2234567999999976666553221 122223221100
Q ss_pred ----------eEEEEEeecCCcCEEEEEEcCC-CcEEEEe-eCCCeEEEEecccccccc----ccccCC--------Ccc
Q 016982 134 ----------WVSKLIRKRHDSSVTSVAWHPN-NVFLATT-STDGKCRVFSTFIKGVDI----KEKKEG--------TSS 189 (379)
Q Consensus 134 ----------~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~-~~d~~i~v~d~~~~~~~~----~~~~~~--------~~~ 189 (379)
...+.+..++.. ...++|+|. ++++++- +.++.-.|--+. +.... ...... ...
T Consensus 161 ~dnP~~~~~~~~~~i~A~GlRN-~~~~~~d~~tg~l~~~d~G~~~~dein~i~-~G~nYGWP~~~~~~~~~~~~~~~~~~ 238 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGLRN-PFGLAFDPNTGRLWAADNGPDGWDEINRIE-PGGNYGWPYCEGGPKYSGPPIGDAPS 238 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE--SE-EEEEEEETTTTEEEEEEE-SSSSEEEEEE--TT-B--TTTBSSSCSTTSS-ECTGSS
T ss_pred CCCccccCCCceEEEEEeCCCc-cccEEEECCCCcEEEEccCCCCCcEEEEec-cCCcCCCCCCcCCCCCCCCccccccC
Confidence 001122134443 357899998 6655542 223222222221 11110 000000 000
Q ss_pred CCcccceEEEeecCCcceEEEEECC-------CCCEEEEEcCCCeEEEEECCCCCceeee---eeeecCCeeeEEEecCC
Q 016982 190 DTKFGEQILQLDLSFSWAFGVKWSP-------SGNTLAYVGHNSMIYFVDDVGPSPLAQN---VAFRDLPLRDVLFVSEK 259 (379)
Q Consensus 190 ~~~~~~~~~~~~~~~~~v~~~~~sp-------~~~~l~~~~~d~~i~v~d~~~~~~~~~~---~~~~~~~i~~~~~s~~~ 259 (379)
......++..+..| ..+..+.|.+ .|.+++..-..+.|...++......... +......+..+++.|||
T Consensus 239 ~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG 317 (331)
T PF07995_consen 239 CPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDG 317 (331)
T ss_dssp -TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTS
T ss_pred CCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCC
Confidence 01122344455544 4567777764 3556666666778888887644322111 22233468999999999
Q ss_pred cEEEEEe-CCCe
Q 016982 260 MVIGVGF-DCNP 270 (379)
Q Consensus 260 ~~l~~~~-d~~~ 270 (379)
.++++.. ++.|
T Consensus 318 ~Lyv~~d~~G~i 329 (331)
T PF07995_consen 318 ALYVSDDSDGKI 329 (331)
T ss_dssp EEEEEE-TTTTE
T ss_pred eEEEEECCCCeE
Confidence 9877544 5554
No 401
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.89 E-value=0.085 Score=46.90 Aligned_cols=151 Identities=10% Similarity=0.128 Sum_probs=85.3
Q ss_pred CceeEEEECCCCCEEEEEe---CCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCC----cEEEEeeCCCeEEEE
Q 016982 99 RAALCVQWSPKENKFAVGS---GAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNN----VFLATTSTDGKCRVF 171 (379)
Q Consensus 99 ~~v~~~~~~~~~~~l~~~~---~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~----~~l~~~~~d~~i~v~ 171 (379)
.++..++|. ||+.++-.. .+|.+++ +. ... .+....|..+.|.|-+ ..|++.-....|.||
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kf-----Gd----s~v--iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVW 87 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKF-----GD----SKV--IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVW 87 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCcccc-----CC----ccE--eeccceeeeeeecCcccCCCCceEEEeccceEEEE
Confidence 467888887 566544332 1233222 11 122 2455678999999953 345556678899999
Q ss_pred eccccccccccccCCCccCCcccceEEEeecC-----CcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeee
Q 016982 172 STFIKGVDIKEKKEGTSSDTKFGEQILQLDLS-----FSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFR 246 (379)
Q Consensus 172 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 246 (379)
-+.- .. ....+.+.....+ .--.....|+|....|++-.....-.+++++.....++.--..
T Consensus 88 qL~~-------s~------~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~ 154 (671)
T PF15390_consen 88 QLCP-------ST------TERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKT 154 (671)
T ss_pred Eecc-------Cc------cccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccC
Confidence 8621 00 0112222221111 1113567899998888776555444566665544333322234
Q ss_pred cCCeeeEEEecCCcEEEEEeCC--CeEEEE
Q 016982 247 DLPLRDVLFVSEKMVIGVGFDC--NPMVFA 274 (379)
Q Consensus 247 ~~~i~~~~~s~~~~~l~~~~d~--~~~i~~ 274 (379)
.+.|.+.+|.+||+.|+.+-.. ..++|+
T Consensus 155 ~G~IhCACWT~DG~RLVVAvGSsLHSyiWd 184 (671)
T PF15390_consen 155 SGLIHCACWTKDGQRLVVAVGSSLHSYIWD 184 (671)
T ss_pred CceEEEEEecCcCCEEEEEeCCeEEEEEec
Confidence 6779999999999877744433 445665
No 402
>PRK13684 Ycf48-like protein; Provisional
Probab=96.86 E-value=0.25 Score=42.30 Aligned_cols=150 Identities=13% Similarity=0.137 Sum_probs=86.4
Q ss_pred CCceeEEEECCCCCEEEEEeCCCeEEEEEeecC-CceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEecccc
Q 016982 98 NRAALCVQWSPKENKFAVGSGAKTVCICYYEQE-NNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIK 176 (379)
Q Consensus 98 ~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~ 176 (379)
...+..+.+.|++.+++++. .|.+.. ..+.+ ..|... . ..-...++++.+.|+++.++++ ..|.+++=..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~-s~~~gg~tW~~~--~-~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~--- 242 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYS-TWEPGQTAWTPH--Q-RNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDP--- 242 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEE-EcCCCCCeEEEe--e-CCCcccceeeeEcCCCCEEEEe-cCCEEEEccC---
Confidence 56788999999887665554 565532 11222 223221 1 3445678999999998877665 4566543211
Q ss_pred ccccccccCCCccCCcccceEEEeec----CCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeee---eecCC
Q 016982 177 GVDIKEKKEGTSSDTKFGEQILQLDL----SFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVA---FRDLP 249 (379)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---~~~~~ 249 (379)
..+........ ....+..+.+.|++..+++ +.+|.+.. ....++.- +... .-...
T Consensus 243 ---------------d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~~-S~d~G~tW-~~~~~~~~~~~~ 304 (334)
T PRK13684 243 ---------------DDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLLV-SKDGGKTW-EKDPVGEEVPSN 304 (334)
T ss_pred ---------------CCCCccccccCCccccccceeeEEEcCCCCEEEE-cCCCeEEE-eCCCCCCC-eECCcCCCCCcc
Confidence 11111111111 1234778899998876655 45675543 33333321 2221 11235
Q ss_pred eeeEEEecCCcEEEEEeCCCeEEEE
Q 016982 250 LRDVLFVSEKMVIGVGFDCNPMVFA 274 (379)
Q Consensus 250 i~~~~~s~~~~~l~~~~d~~~~i~~ 274 (379)
.+.+.|..+++.+++|..|.|..+.
T Consensus 305 ~~~~~~~~~~~~~~~G~~G~il~~~ 329 (334)
T PRK13684 305 FYKIVFLDPEKGFVLGQRGVLLRYV 329 (334)
T ss_pred eEEEEEeCCCceEEECCCceEEEec
Confidence 7888888888899999888877654
No 403
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.83 E-value=0.0068 Score=34.28 Aligned_cols=31 Identities=19% Similarity=0.289 Sum_probs=28.4
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982 54 DQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE 84 (379)
Q Consensus 54 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~ 84 (379)
...|.+++|+|...+||.++.+|.|.++.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4579999999999999999999999999983
No 404
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=96.77 E-value=0.33 Score=42.39 Aligned_cols=78 Identities=14% Similarity=0.130 Sum_probs=49.2
Q ss_pred CcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCc----eeeeeee--ecCCeeeEEEecCCcEEEEEeCCCeEEEEecC
Q 016982 204 FSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSP----LAQNVAF--RDLPLRDVLFVSEKMVIGVGFDCNPMVFAADE 277 (379)
Q Consensus 204 ~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~----~~~~~~~--~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~ 277 (379)
...+..+.+.+++..++++ ..|.+..=+ ..+.. ....... ....+.++.|.+++..+++|..|.+.. ..+.
T Consensus 280 ~~~l~~v~~~~dg~l~l~g-~~G~l~~S~-d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~-s~D~ 356 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLT-RGGGLYVSK-GTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLR-STDG 356 (398)
T ss_pred ccceeeeeEcCCCCEEEEe-CCceEEEec-CCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEE-eCCC
Confidence 4468899999999988766 556554332 23221 1122211 123588999999999999988875544 4466
Q ss_pred CCcEEEE
Q 016982 278 TGIWTFI 284 (379)
Q Consensus 278 ~~~~~~~ 284 (379)
...|+..
T Consensus 357 G~tW~~~ 363 (398)
T PLN00033 357 GKSWKRD 363 (398)
T ss_pred CcceeEc
Confidence 6678763
No 405
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.71 E-value=0.27 Score=45.17 Aligned_cols=199 Identities=12% Similarity=0.087 Sum_probs=96.0
Q ss_pred eEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeee-EEeecCCCceeEEEECCCCC
Q 016982 33 EVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPT-LVILRLNRAALCVQWSPKEN 111 (379)
Q Consensus 33 ~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~ 111 (379)
.|+||+..+. .+..+.-....+-.+.|+.+.. |+....+|++.+|++........ .........|..+.+..+|-
T Consensus 65 ~I~If~~sG~---lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 65 YIRIFNISGQ---LLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred eEEEEecccc---chHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCce
Confidence 4788887763 4443333334788999997764 55568899999999876532221 11111223455555554554
Q ss_pred EEEEEeCCCeEEEE-EeecCCceeEEEEEee--cCCcCEEEEEEcCCC---cEEEEeeCCCeEEEEeccccccccccccC
Q 016982 112 KFAVGSGAKTVCIC-YYEQENNWWVSKLIRK--RHDSSVTSVAWHPNN---VFLATTSTDGKCRVFSTFIKGVDIKEKKE 185 (379)
Q Consensus 112 ~l~~~~~d~~v~i~-~~~~~~~~~~~~~~~~--~~~~~v~~~~~~p~~---~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 185 (379)
.+++ .+|.+.+. +..... ...... ....+..|-...+++ ..++-....-...++-.
T Consensus 141 avlt--~~g~v~~i~~~~~~~----~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~------------ 202 (829)
T KOG2280|consen 141 AVLT--VSGQVILINGVEEPK----LRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQV------------ 202 (829)
T ss_pred EEEe--cCCcEEEEcCCCcch----hhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccce------------
Confidence 3333 34555542 222211 111101 111111222222221 11111110000011111
Q ss_pred CCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeee-eecCCeeeEEEecCC
Q 016982 186 GTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVA-FRDLPLRDVLFVSEK 259 (379)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~i~~~~~s~~~ 259 (379)
.........+......+..+..||+.++|+.-...|.|.+.+....+.. ..+. ....+...++|..+.
T Consensus 203 -----~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~l-ce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 203 -----EESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQIL-CEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred -----ecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhh-hccCCCCCCchHhceeecCC
Confidence 0111112222222456788999999999999889999998876654422 3332 112333467776544
No 406
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.70 E-value=0.0083 Score=46.27 Aligned_cols=104 Identities=15% Similarity=0.150 Sum_probs=60.4
Q ss_pred CCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCC-
Q 016982 66 SNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHD- 144 (379)
Q Consensus 66 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~- 144 (379)
+..++.|+.+|.|.+|+.................-...+.--.++.+..+++.|+.|+.|+....+. .... ..|.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~---~g~~-g~h~~ 145 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKV---LGYV-GQHNF 145 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCce---eeee-ccccC
Confidence 4678899999999999887322111111111111122222233566888999999999999887762 3333 4455
Q ss_pred cCEEEEEEcCCCcEEEEe--eCCCeEEEEec
Q 016982 145 SSVTSVAWHPNNVFLATT--STDGKCRVFST 173 (379)
Q Consensus 145 ~~v~~~~~~p~~~~l~~~--~~d~~i~v~d~ 173 (379)
.++........++.++.. +.|..++.|++
T Consensus 146 ~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~v 176 (238)
T KOG2444|consen 146 ESGEELIVVGSDEFLKIADTSHDRVLKKWNV 176 (238)
T ss_pred CCcceeEEecCCceEEeeccccchhhhhcch
Confidence 444444444445555555 55666666665
No 407
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.63 E-value=0.54 Score=43.06 Aligned_cols=209 Identities=10% Similarity=0.074 Sum_probs=104.0
Q ss_pred CcEEEEEecCCeEEEEEecCCceEEEEEeccCC-CceE----------EEEEcCCCCEEEEEeCCCeEEEEeccCCceee
Q 016982 22 HAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHD-QIVS----------GIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVP 90 (379)
Q Consensus 22 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~-~~v~----------~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~ 90 (379)
+..+++++.++.|+-+|..++ +.+-.+.... ..+. .+++. +..++.++.|+.|.-.|..+++.+-
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TG--k~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALDa~TGk~~W 144 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTG--KELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTLDARLVALDAKTGKVVW 144 (527)
T ss_pred CCEEEEECCCCcEEEEECCCC--ceeeEecCCCCcccccccccccccccceEE--CCEEEEEcCCCEEEEEECCCCCEEe
Confidence 456666777788999999887 4444332211 1111 12222 3467778889999999999998655
Q ss_pred eEEeecCCCceeEEEECC--CCCEEEEEeC------CCeEEEEEeecCCceeEEEEEeecC-------------------
Q 016982 91 TLVILRLNRAALCVQWSP--KENKFAVGSG------AKTVCICYYEQENNWWVSKLIRKRH------------------- 143 (379)
Q Consensus 91 ~~~~~~~~~~v~~~~~~~--~~~~l~~~~~------d~~v~i~~~~~~~~~~~~~~~~~~~------------------- 143 (379)
......+... ..+.-+| .+..++++.. +|.|.-+|.++++..+..... ...
T Consensus 145 ~~~~~~~~~~-~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~-p~~~~~~~~~~~~~~~~~~~~t 222 (527)
T TIGR03075 145 SKKNGDYKAG-YTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTV-PGDMGYLDKADKPVGGEPGAKT 222 (527)
T ss_pred eccccccccc-ccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCc-CCCcccccccccccccccccCC
Confidence 4432211110 1111122 1234555432 678888888887743332222 110
Q ss_pred ---------CcCE-EEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcce------
Q 016982 144 ---------DSSV-TSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWA------ 207 (379)
Q Consensus 144 ---------~~~v-~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v------ 207 (379)
...+ ..+++.|...++..+..+..- |+-....-+-....+....+.++++..-.++.....+
T Consensus 223 w~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p--~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~ 300 (527)
T TIGR03075 223 WPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSP--WNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGV 300 (527)
T ss_pred CCCCccccCCCCccCceeEcCCCCeEEEeCCCCCC--CCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCC
Confidence 0011 123555555555555433222 2210000000001111112245666655554322211
Q ss_pred ---EEEEECCCCC---EEEEEcCCCeEEEEECCCCCc
Q 016982 208 ---FGVKWSPSGN---TLAYVGHNSMIYFVDDVGPSP 238 (379)
Q Consensus 208 ---~~~~~sp~~~---~l~~~~~d~~i~v~d~~~~~~ 238 (379)
.-+.+..+|+ .++.+..+|.+++.|..+++.
T Consensus 301 ~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 301 NEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred CCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 1222334665 677889999999999888764
No 408
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.60 E-value=0.7 Score=44.00 Aligned_cols=120 Identities=10% Similarity=0.039 Sum_probs=68.6
Q ss_pred cceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCC------CEEEEEeCCCeEEEEec-
Q 016982 11 QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRS------NRIVTVSHDRNSYVWNQ- 83 (379)
Q Consensus 11 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~l~~~~~d~~i~vw~~- 83 (379)
..++....+.+...++.++.++.+...++.......... ......|.|+.++|-| ++++.|..+..+.+.-.
T Consensus 488 ~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~-~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~ 566 (1096)
T KOG1897|consen 488 GKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSH-KEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFL 566 (1096)
T ss_pred CceEEEEEeecceEEEEecCccEEEEEEeeccceeeeee-heecceeEEEecccCCCCCCcceEEEEEeecceEEEEEEC
Confidence 344444555555566666666677777776653222211 1134579999999853 26788877666554433
Q ss_pred cCCceeeeEEe--ecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCC
Q 016982 84 EGSEWVPTLVI--LRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQEN 131 (379)
Q Consensus 84 ~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~ 131 (379)
.+......... ..-+..|.-..+-.|..+|.++..||.+..|.++...
T Consensus 567 pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~t 616 (1096)
T KOG1897|consen 567 PDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINT 616 (1096)
T ss_pred CCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEccc
Confidence 23221111111 1112344445555568899999999999877766543
No 409
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.54 E-value=0.77 Score=43.74 Aligned_cols=227 Identities=13% Similarity=0.119 Sum_probs=131.0
Q ss_pred EEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeC-----------C---CeEEEEeccCCceee
Q 016982 25 VAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSH-----------D---RNSYVWNQEGSEWVP 90 (379)
Q Consensus 25 l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------d---~~i~vw~~~~~~~~~ 90 (379)
|+++ ..+.+++..++.-+--.++++.-+ .....+++.+....+.+.+. . ..++++|-++-+...
T Consensus 687 l~~~-~~~~l~i~tid~iqkl~irtvpl~-~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~ 764 (1096)
T KOG1897|consen 687 LASA-NGGALTIGTIDEIQKLHIRTVPLG-ESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLS 764 (1096)
T ss_pred EEEe-cCCceEEEEecchhhcceeeecCC-CChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEe
Confidence 4443 235566665553211222333333 23456667664444443321 1 136677766665443
Q ss_pred eEEeecC--CCceeEEEECCC-CCEEEEEeC----------CCeEEEEEeecCCceeEEEEE-eecCCcCEEEEEEcCCC
Q 016982 91 TLVILRL--NRAALCVQWSPK-ENKFAVGSG----------AKTVCICYYEQENNWWVSKLI-RKRHDSSVTSVAWHPNN 156 (379)
Q Consensus 91 ~~~~~~~--~~~v~~~~~~~~-~~~l~~~~~----------d~~v~i~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~p~~ 156 (379)
...+... ...+.++.|..| +.++++|.. .|.|.++.+...+. .+.+ ...-.+.+.++.-- +|
T Consensus 765 ~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~---L~~v~e~~v~Gav~aL~~f-ng 840 (1096)
T KOG1897|consen 765 SHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS---LELVAETVVKGAVYALVEF-NG 840 (1096)
T ss_pred eccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc---eeeeeeeeeccceeehhhh-CC
Confidence 3332221 123455568877 677777752 57888888887442 2222 12334555555433 56
Q ss_pred cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Q 016982 157 VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGP 236 (379)
Q Consensus 157 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~ 236 (379)
+++|. -+..|++|+. ...+.++.-..+..++..+...-.|..++.|..-+++.+...+..
T Consensus 841 kllA~--In~~vrLye~------------------t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~ 900 (1096)
T KOG1897|consen 841 KLLAG--INQSVRLYEW------------------TTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGD 900 (1096)
T ss_pred eEEEe--cCcEEEEEEc------------------cccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEecc
Confidence 76664 4567999985 334444444556677888888889999999988787776654433
Q ss_pred Cceeeee--eeecCCeeeEEEecCCcEEEEEeCCCeEEEEecC
Q 016982 237 SPLAQNV--AFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADE 277 (379)
Q Consensus 237 ~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~ 277 (379)
+-....+ ..+...++++.+-.+..++.+-.++++.+...+.
T Consensus 901 eg~f~evArD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 901 EGNFEEVARDYNPNWMTAVEILDDDTYLGAENSGNLFTVRKDS 943 (1096)
T ss_pred CCceEEeehhhCccceeeEEEecCceEEeecccccEEEEEecC
Confidence 3111221 2356678888888888888888888887766553
No 410
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.53 E-value=0.15 Score=48.96 Aligned_cols=145 Identities=14% Similarity=0.102 Sum_probs=89.5
Q ss_pred CceeEEEECCCCCEEEEEeC--CCeEEEEEeecCCcee--EEEEEe-----ecCCcCEEEEEEcCCC-cEEEEeeCCCeE
Q 016982 99 RAALCVQWSPKENKFAVGSG--AKTVCICYYEQENNWW--VSKLIR-----KRHDSSVTSVAWHPNN-VFLATTSTDGKC 168 (379)
Q Consensus 99 ~~v~~~~~~~~~~~l~~~~~--d~~v~i~~~~~~~~~~--~~~~~~-----~~~~~~v~~~~~~p~~-~~l~~~~~d~~i 168 (379)
-++..+...+|+...++... +-.|..||++.-.... ..+.+. ........++.|+|.- ...+.+..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 45566666777765555433 3478888887543210 011110 1223445678888854 345666788889
Q ss_pred EEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeee----
Q 016982 169 RVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVA---- 244 (379)
Q Consensus 169 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---- 244 (379)
++..+. .....+..+.. ....++++|+|.|+.++.|-..|++.-|...-. +...+.
T Consensus 181 ~V~~~~-----------------~~~~~v~s~p~-t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le--ik~~ip~Pp~ 240 (1405)
T KOG3630|consen 181 RVKSTK-----------------QLAQNVTSFPV-TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE--IKSEIPEPPV 240 (1405)
T ss_pred hhhhhh-----------------hhhhhhcccCc-ccceeeEEeccccceeeEecCCCeEEEeecccc--eeecccCCCc
Confidence 888762 22233333322 445799999999999999999999998864432 111111
Q ss_pred eecCCeeeEEEecCCcEEE
Q 016982 245 FRDLPLRDVLFVSEKMVIG 263 (379)
Q Consensus 245 ~~~~~i~~~~~s~~~~~l~ 263 (379)
.....|.+++|...-.+++
T Consensus 241 ~e~yrvl~v~Wl~t~eflv 259 (1405)
T KOG3630|consen 241 EENYRVLSVTWLSTQEFLV 259 (1405)
T ss_pred CCCcceeEEEEecceeEEE
Confidence 1146799999998777776
No 411
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.48 E-value=0.3 Score=38.26 Aligned_cols=214 Identities=13% Similarity=0.056 Sum_probs=107.8
Q ss_pred cEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCC---CEEEEEeCCCeEEEEeccCCc--eeee---EEe
Q 016982 23 AMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRS---NRIVTVSHDRNSYVWNQEGSE--WVPT---LVI 94 (379)
Q Consensus 23 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~vw~~~~~~--~~~~---~~~ 94 (379)
.++.+--..|.|.-||..+++. ....+.+. ++.++.+--.+ .+.+.++..-.|.-||..... .... ...
T Consensus 28 sLl~VDi~ag~v~r~D~~qn~v-~ra~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~ 104 (310)
T KOG4499|consen 28 SLLYVDIEAGEVHRYDIEQNKV-YRAKIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP 104 (310)
T ss_pred eEEEEEeccCceehhhhhhhhe-EEEEEecC--cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence 4444444567777788887632 22233332 23333332222 233333333334456633221 1111 111
Q ss_pred ecCCCceeEEEECCCCCEEEEEeCC---------CeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEE-EeeC
Q 016982 95 LRLNRAALCVQWSPKENKFAVGSGA---------KTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLA-TTST 164 (379)
Q Consensus 95 ~~~~~~v~~~~~~~~~~~l~~~~~d---------~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-~~~~ 164 (379)
...+.+...-..+|+|++++-.-.| |.++.|-.... .+.+ ...-.--+.++|+.+.+.+. +-+.
T Consensus 105 d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~-----v~~i-~~~v~IsNgl~Wd~d~K~fY~iDsl 178 (310)
T KOG4499|consen 105 DRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQ-----VELI-WNCVGISNGLAWDSDAKKFYYIDSL 178 (310)
T ss_pred hHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCCC-----ceee-ehhccCCccccccccCcEEEEEccC
Confidence 1123456667788999984332222 33333322111 1111 12223335788887765444 4556
Q ss_pred CCeEEEEeccccccccccccCCCccCCcccceEEEeec----CCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCcee
Q 016982 165 DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDL----SFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA 240 (379)
Q Consensus 165 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~ 240 (379)
+-.|.-||..-..-+. ...+.+..++. .....-.++...+|++.++.-..++|.-.|..+++. +
T Consensus 179 n~~V~a~dyd~~tG~~-----------snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~-L 246 (310)
T KOG4499|consen 179 NYEVDAYDYDCPTGDL-----------SNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKI-L 246 (310)
T ss_pred ceEEeeeecCCCcccc-----------cCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcE-E
Confidence 7778778852111111 11122222211 011123455567888888887889999999999884 4
Q ss_pred eeeeeecCCeeeEEEec
Q 016982 241 QNVAFRDLPLRDVLFVS 257 (379)
Q Consensus 241 ~~~~~~~~~i~~~~~s~ 257 (379)
.++......|++++|--
T Consensus 247 ~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 247 LEIKLPTPQITSCCFGG 263 (310)
T ss_pred EEEEcCCCceEEEEecC
Confidence 67776678899999964
No 412
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=96.45 E-value=0.4 Score=44.59 Aligned_cols=148 Identities=13% Similarity=0.185 Sum_probs=93.5
Q ss_pred CcEEEEEecCCeEEEEEecCCceEE----EEEec----------------cCCCceEEEEEcC--CCCEEEEEeCCCeEE
Q 016982 22 HAMVAFCPNNNEVHIYKLIQEKWEK----LHVLQ----------------KHDQIVSGIDWSV--RSNRIVTVSHDRNSY 79 (379)
Q Consensus 22 ~~~l~~~~~dg~i~i~~~~~~~~~~----~~~~~----------------~~~~~v~~~~~~~--~~~~l~~~~~d~~i~ 79 (379)
.++++++. .+.|.||+...-...+ ...+. .....|+.|.... +...|+.+..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 66777765 5799999986432111 00100 0112355554433 236788899999999
Q ss_pred EEeccC-------C-----------ceeeeEEeecCCCceeEEEEC--CCCCEEEEEeCCCeEEEEEeecCC-ceeEEEE
Q 016982 80 VWNQEG-------S-----------EWVPTLVILRLNRAALCVQWS--PKENKFAVGSGAKTVCICYYEQEN-NWWVSKL 138 (379)
Q Consensus 80 vw~~~~-------~-----------~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~ 138 (379)
+|.+++ . ...+.+. ......++.++++ ...++||+++....|.||-+.... .......
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~-~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s 206 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFH-LRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS 206 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeE-eecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence 997521 0 0112222 2245678999998 788899999988889988776632 1111111
Q ss_pred EeecCCcCEEEEEEcCCC---c---EEEEeeCCCeEEEEec
Q 016982 139 IRKRHDSSVTSVAWHPNN---V---FLATTSTDGKCRVFST 173 (379)
Q Consensus 139 ~~~~~~~~v~~~~~~p~~---~---~l~~~~~d~~i~v~d~ 173 (379)
..+...|.+++|-++. . .+++++-.|.+.+|++
T Consensus 207 --~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 207 --HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred --cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 2456678899998753 2 7788888999999887
No 413
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.41 E-value=0.58 Score=40.91 Aligned_cols=39 Identities=21% Similarity=0.073 Sum_probs=32.0
Q ss_pred EeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCC
Q 016982 199 QLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPS 237 (379)
Q Consensus 199 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~ 237 (379)
.+......+.++..+|++++.++...-|.|.++|+..+.
T Consensus 302 ~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~ 340 (415)
T PF14655_consen 302 GLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGI 340 (415)
T ss_pred eeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCCh
Confidence 344445568899999999999998888999999988764
No 414
>PRK10115 protease 2; Provisional
Probab=96.23 E-value=1.1 Score=42.48 Aligned_cols=113 Identities=12% Similarity=0.108 Sum_probs=66.2
Q ss_pred ceeEEEeCCCCcEEEEEec-----CCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC------CeEEE
Q 016982 12 CITCHAWSPDHAMVAFCPN-----NNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD------RNSYV 80 (379)
Q Consensus 12 ~i~~~~~s~~~~~l~~~~~-----dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~v 80 (379)
.+..+.+||||++|+.+.. ...|++.|+.++. .....+.+ .. ..++|++|++.|+....+ ..|..
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~-~l~~~i~~-~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGN-WYPELLDN-VE--PSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCC-CCCccccC-cc--eEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 4677899999999988643 2368888887762 11122222 11 469999999877665432 35888
Q ss_pred EeccCCceeeeEEeecCCCcee-EEEECCCCCEEEEEeC---CCeEEEEEee
Q 016982 81 WNQEGSEWVPTLVILRLNRAAL-CVQWSPKENKFAVGSG---AKTVCICYYE 128 (379)
Q Consensus 81 w~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~---d~~v~i~~~~ 128 (379)
+++.++................ .+..+.++++++..+. ++.+.+++..
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 8888872112222222222233 3333447877665544 4567777743
No 415
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.23 E-value=0.51 Score=38.39 Aligned_cols=157 Identities=13% Similarity=0.033 Sum_probs=95.9
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeE
Q 016982 56 IVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWV 135 (379)
Q Consensus 56 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~ 135 (379)
-+..+.++ +++...+..+.-+++.|+.+.............+-..++..+ |++..++..|.-+-+.|+.......+
T Consensus 88 l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs--Gn~aYVadlddgfLivdvsdpssP~l 163 (370)
T COG5276 88 LFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS--GNYAYVADLDDGFLIVDVSDPSSPQL 163 (370)
T ss_pred hhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec--CCEEEEeeccCcEEEEECCCCCCcee
Confidence 44556665 557777777778999999887643433333333445555554 88988888665666788877764334
Q ss_pred EEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCC
Q 016982 136 SKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPS 215 (379)
Q Consensus 136 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 215 (379)
.... .........++.+ |++-..+..|+-+.+-|+.- ......+..... ...+.++..+++
T Consensus 164 agry-a~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSn---------------p~sPvli~~~n~-g~g~~sv~vsdn 224 (370)
T COG5276 164 AGRY-ALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSN---------------PHSPVLIGSYNT-GPGTYSVSVSDN 224 (370)
T ss_pred eeee-ccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccC---------------CCCCeEEEEEec-CCceEEEEecCC
Confidence 4443 3334444566664 66777777899999999730 011122222222 235778888877
Q ss_pred CCEEEEEcCCCeEEEEECCCCC
Q 016982 216 GNTLAYVGHNSMIYFVDDVGPS 237 (379)
Q Consensus 216 ~~~l~~~~~d~~i~v~d~~~~~ 237 (379)
..+++.. +--+.+-|..+.+
T Consensus 225 r~y~vvy--~egvlivd~s~~s 244 (370)
T COG5276 225 RAYLVVY--DEGVLIVDVSGPS 244 (370)
T ss_pred eeEEEEc--ccceEEEecCCCC
Confidence 7766654 3446677766654
No 416
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=96.13 E-value=0.83 Score=39.95 Aligned_cols=146 Identities=16% Similarity=0.175 Sum_probs=82.7
Q ss_pred eeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEecccccccc
Q 016982 101 ALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDI 180 (379)
Q Consensus 101 v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~ 180 (379)
...+..++++.+++++.. |.+.. ..+.+...+ ..........+..+.|.+++..++++ ..|.+..=+
T Consensus 241 f~~v~~~~dG~~~~vg~~-G~~~~-s~d~G~~~W--~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~S~-------- 307 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSR-GNFYL-TWEPGQPYW--QPHNRASARRIQNMGWRADGGLWLLT-RGGGLYVSK-------- 307 (398)
T ss_pred eeeEEEcCCCCEEEEECC-ccEEE-ecCCCCcce--EEecCCCccceeeeeEcCCCCEEEEe-CCceEEEec--------
Confidence 344566778877777664 44322 112222111 11113445678899999998877765 556554332
Q ss_pred ccccCCCccCCcccc-----eEEEeec--CCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeee---eecCCe
Q 016982 181 KEKKEGTSSDTKFGE-----QILQLDL--SFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVA---FRDLPL 250 (379)
Q Consensus 181 ~~~~~~~~~~~~~~~-----~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---~~~~~i 250 (379)
..+. ....... ....+..+.|.+++..+++| ..|.+..-. ..++.- +... .-...+
T Consensus 308 -----------d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW-~~~~~~~~~~~~l 373 (398)
T PLN00033 308 -----------GTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSW-KRDKGADNIAANL 373 (398)
T ss_pred -----------CCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcce-eEccccCCCCcce
Confidence 1111 1222211 12358899999888876665 567665553 333321 2211 223568
Q ss_pred eeEEEecCCcEEEEEeCCCeEEE
Q 016982 251 RDVLFVSEKMVIGVGFDCNPMVF 273 (379)
Q Consensus 251 ~~~~~s~~~~~l~~~~d~~~~i~ 273 (379)
+.+.|.++++.++.|.+|.+.-|
T Consensus 374 y~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 374 YSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred eEEEEcCCCceEEEeCCcEEEEe
Confidence 89999998999999988876543
No 417
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.07 E-value=0.17 Score=43.54 Aligned_cols=143 Identities=11% Similarity=0.130 Sum_probs=84.8
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeccCC--ceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEE
Q 016982 59 GIDWSVRSNRIVTVSHDRNSYVWNQEGS--EWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVS 136 (379)
Q Consensus 59 ~~~~~~~~~~l~~~~~d~~i~vw~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~ 136 (379)
.+-|. |.+..+.+...|.+.=|-+... .....+. ....++|.++.|++|.+.+|+--.+.+|.+++....+.....
T Consensus 27 gvFfD-DaNkqlfavrSggatgvvvkgpndDVpiSfd-m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~ 104 (657)
T KOG2377|consen 27 GVFFD-DANKQLFAVRSGGATGVVVKGPNDDVPISFD-MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY 104 (657)
T ss_pred ceeec-cCcceEEEEecCCeeEEEEeCCCCCCCceee-ecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence 34443 3333333444455666655443 2223333 335679999999999999999999999999988544321000
Q ss_pred EEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCC
Q 016982 137 KLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSG 216 (379)
Q Consensus 137 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 216 (379)
..-.......|....|..+ .-+|..+..| +-+|-+ .+....++..+.+...|.--.|.|+.
T Consensus 105 ~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v-----------------~pekrslRlVks~~~nvnWy~yc~et 165 (657)
T KOG2377|consen 105 TQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQV-----------------LPEKRSLRLVKSHNLNVNWYMYCPET 165 (657)
T ss_pred HHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEE-----------------chhhhhhhhhhhcccCccEEEEcccc
Confidence 0000223445888999854 5566665544 566654 13333444445566667777888877
Q ss_pred CEEEEE
Q 016982 217 NTLAYV 222 (379)
Q Consensus 217 ~~l~~~ 222 (379)
+.++.+
T Consensus 166 ~v~LL~ 171 (657)
T KOG2377|consen 166 AVILLS 171 (657)
T ss_pred ceEeee
Confidence 764443
No 418
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.06 E-value=0.054 Score=51.76 Aligned_cols=148 Identities=16% Similarity=0.124 Sum_probs=89.4
Q ss_pred cceeEEEeCCCCcEEEEE--ecCCeEEEEEecCCc---eEEEEEe------ccCCCceEEEEEcCCC-CEEEEEeCCCeE
Q 016982 11 QCITCHAWSPDHAMVAFC--PNNNEVHIYKLIQEK---WEKLHVL------QKHDQIVSGIDWSVRS-NRIVTVSHDRNS 78 (379)
Q Consensus 11 ~~i~~~~~s~~~~~l~~~--~~dg~i~i~~~~~~~---~~~~~~~------~~~~~~v~~~~~~~~~-~~l~~~~~d~~i 78 (379)
-+|..+..++|+...++. +.+-.|..||+..=. .+....| .....-..++.|+|.= ...+.+..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 456666667787665443 334478899986421 0111111 1122345678898864 234566778888
Q ss_pred EEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcE
Q 016982 79 YVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVF 158 (379)
Q Consensus 79 ~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 158 (379)
++..+.... ............++++|+|.|+.+++|-..|++.-|.........+...- ......|.+++|-....+
T Consensus 181 ~V~~~~~~~--~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp-~~e~yrvl~v~Wl~t~ef 257 (1405)
T KOG3630|consen 181 RVKSTKQLA--QNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPP-VEENYRVLSVTWLSTQEF 257 (1405)
T ss_pred hhhhhhhhh--hhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCC-cCCCcceeEEEEecceeE
Confidence 888765443 22222345678899999999999999999999987755433210011111 122568999999876666
Q ss_pred EEE
Q 016982 159 LAT 161 (379)
Q Consensus 159 l~~ 161 (379)
+++
T Consensus 258 lvv 260 (1405)
T KOG3630|consen 258 LVV 260 (1405)
T ss_pred EEE
Confidence 554
No 419
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.95 E-value=1.6 Score=41.76 Aligned_cols=107 Identities=9% Similarity=0.113 Sum_probs=62.8
Q ss_pred CcEEEEEecCCeEEEEEecCCceEEEEEeccCCC--------ceEEEEEcC----------------CCCEEEEEeCCCe
Q 016982 22 HAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQ--------IVSGIDWSV----------------RSNRIVTVSHDRN 77 (379)
Q Consensus 22 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~--------~v~~~~~~~----------------~~~~l~~~~~d~~ 77 (379)
+..|.+++.++.|.-.|..++ +.+-.+..... ....+++.. .+..++.++.|+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TG--k~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~ 271 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATG--KEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDAR 271 (764)
T ss_pred CCEEEEECCCCeEEEEECCCC--cEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCe
Confidence 456666777888988898887 34444332111 012233321 2347888889999
Q ss_pred EEEEeccCCceeeeEEeecCCCce-------------eEEEECC--CCCEEEEEeC----------CCeEEEEEeecCCc
Q 016982 78 SYVWNQEGSEWVPTLVILRLNRAA-------------LCVQWSP--KENKFAVGSG----------AKTVCICYYEQENN 132 (379)
Q Consensus 78 i~vw~~~~~~~~~~~~~~~~~~~v-------------~~~~~~~--~~~~l~~~~~----------d~~v~i~~~~~~~~ 132 (379)
+.-.|.++++....+.. .+.+ ..+.-.| .+..+++|+. +|.|+-+|.++++.
T Consensus 272 LiALDA~TGk~~W~fg~---~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl 348 (764)
T TIGR03074 272 LIALDADTGKLCEDFGN---NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGAL 348 (764)
T ss_pred EEEEECCCCCEEEEecC---CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcE
Confidence 99999999985544321 1111 1111122 2345666643 57899999988875
Q ss_pred e
Q 016982 133 W 133 (379)
Q Consensus 133 ~ 133 (379)
.
T Consensus 349 ~ 349 (764)
T TIGR03074 349 V 349 (764)
T ss_pred e
Confidence 3
No 420
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.88 E-value=0.069 Score=29.27 Aligned_cols=32 Identities=25% Similarity=0.319 Sum_probs=26.3
Q ss_pred cceEEEEECCCC---CEEEEEcCCCeEEEEECCCC
Q 016982 205 SWAFGVKWSPSG---NTLAYVGHNSMIYFVDDVGP 236 (379)
Q Consensus 205 ~~v~~~~~sp~~---~~l~~~~~d~~i~v~d~~~~ 236 (379)
+.+.++.|+|+. .+|+.+-..+.|.++|+++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 358899999854 58888888899999999853
No 421
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.85 E-value=1.1 Score=39.22 Aligned_cols=146 Identities=12% Similarity=0.122 Sum_probs=87.4
Q ss_pred CcEEEEEecCCeEEEEEecCCceEEEEEe--ccCCCceEEEEEcC-----CCCEEEEEeCCCeEEEEeccCC-------c
Q 016982 22 HAMVAFCPNNNEVHIYKLIQEKWEKLHVL--QKHDQIVSGIDWSV-----RSNRIVTVSHDRNSYVWNQEGS-------E 87 (379)
Q Consensus 22 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~--~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~vw~~~~~-------~ 87 (379)
...+++|+..|.++||+...+..+....+ ..-..+|..++.-. +...||. -.-..+.+|.+... .
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence 36899999999999999876532221111 11345788777542 2234554 45577888887321 1
Q ss_pred eeeeEEeecC--CCceeEEEECC----C-CCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEE
Q 016982 88 WVPTLVILRL--NRAALCVQWSP----K-ENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLA 160 (379)
Q Consensus 88 ~~~~~~~~~~--~~~v~~~~~~~----~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 160 (379)
.........| ......+++-| . -.++.+-+.||.+.+|+-+.-. ....+ ...--.-.+.+.+....|+
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~---f~~~l--p~~llPgPl~Y~~~tDsfv 190 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA---FSRFL--PDFLLPGPLCYCPRTDSFV 190 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE---EEEEc--CCCCCCcCeEEeecCCEEE
Confidence 1111112223 23344444444 2 3578888999999998765532 22222 1122223467888888999
Q ss_pred EeeCCCeEEEEec
Q 016982 161 TTSTDGKCRVFST 173 (379)
Q Consensus 161 ~~~~d~~i~v~d~ 173 (379)
+++.+..+.-|..
T Consensus 191 t~sss~~l~~Yky 203 (418)
T PF14727_consen 191 TASSSWTLECYKY 203 (418)
T ss_pred EecCceeEEEecH
Confidence 9999989998875
No 422
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.73 E-value=1.4 Score=39.19 Aligned_cols=112 Identities=17% Similarity=0.207 Sum_probs=66.4
Q ss_pred eEEEEEcCCCCEEEEE-eCCC----eEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCC---------e-
Q 016982 57 VSGIDWSVRSNRIVTV-SHDR----NSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK---------T- 121 (379)
Q Consensus 57 v~~~~~~~~~~~l~~~-~~d~----~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---------~- 121 (379)
+....++|+|++++.+ +..| .++++|+.+++.+.... . ......+.|.++++.|+....+. .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i-~--~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI-E--NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE-E--EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc-c--ccccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 3467899999988765 3434 49999999997554321 1 11223399999988877765433 2
Q ss_pred -EEEEEeecCCceeEEEEEeecCC-cC-EEEEEEcCCCcEEEEeeC---C-CeEEEEec
Q 016982 122 -VCICYYEQENNWWVSKLIRKRHD-SS-VTSVAWHPNNVFLATTST---D-GKCRVFST 173 (379)
Q Consensus 122 -v~i~~~~~~~~~~~~~~~~~~~~-~~-v~~~~~~p~~~~l~~~~~---d-~~i~v~d~ 173 (379)
|+.|.+.+.... ...+..... .. ...+..++++++|+.... + ..+.+.++
T Consensus 203 ~v~~~~~gt~~~~--d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~ 259 (414)
T PF02897_consen 203 QVYRHKLGTPQSE--DELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDL 259 (414)
T ss_dssp EEEEEETTS-GGG---EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEEC
T ss_pred EEEEEECCCChHh--CeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEec
Confidence 555555544321 122222222 23 678889999988775433 2 34666665
No 423
>PLN02153 epithiospecifier protein
Probab=95.59 E-value=1.3 Score=38.07 Aligned_cols=69 Identities=14% Similarity=0.283 Sum_probs=40.1
Q ss_pred CCcEEEEEecC-----CeEEEEEecCCceEEEEEeccC----CCceEEEEEcCCCCEEEEEeCC-----------CeEEE
Q 016982 21 DHAMVAFCPNN-----NEVHIYKLIQEKWEKLHVLQKH----DQIVSGIDWSVRSNRIVTVSHD-----------RNSYV 80 (379)
Q Consensus 21 ~~~~l~~~~~d-----g~i~i~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d-----------~~i~v 80 (379)
++++++.|+.+ ..+.+||..+.+|..+..+... ...-.+++. -+++..+.|+.+ ..+.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~ 163 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIEA 163 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceEEE
Confidence 45667777653 3578899988877766544211 111122222 345556666643 24778
Q ss_pred EeccCCceee
Q 016982 81 WNQEGSEWVP 90 (379)
Q Consensus 81 w~~~~~~~~~ 90 (379)
||..+.++..
T Consensus 164 yd~~~~~W~~ 173 (341)
T PLN02153 164 YNIADGKWVQ 173 (341)
T ss_pred EECCCCeEee
Confidence 9998887654
No 424
>PHA03098 kelch-like protein; Provisional
Probab=95.58 E-value=0.56 Score=43.25 Aligned_cols=145 Identities=11% Similarity=0.101 Sum_probs=74.8
Q ss_pred CCcEEEEEecC-----CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC------CeEEEEeccCCcee
Q 016982 21 DHAMVAFCPNN-----NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD------RNSYVWNQEGSEWV 89 (379)
Q Consensus 21 ~~~~l~~~~~d-----g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~vw~~~~~~~~ 89 (379)
++++++.|+.+ ..+..||..+++|.....+....... +++. -+++..+.|+.+ ..+..||..++++.
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~ 419 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-CVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWS 419 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-eEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence 56677777764 35778898888777655544322221 2222 245566666632 35889999888765
Q ss_pred eeEEeecCCCceeEEEECCCCCEEEEEeCCC--------eEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEE
Q 016982 90 PTLVILRLNRAALCVQWSPKENKFAVGSGAK--------TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLAT 161 (379)
Q Consensus 90 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--------~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~ 161 (379)
..-.. +....-.++. ..++..++.|+.+. .+.+||..+.. |.....+ .........+.+ +++.++.
T Consensus 420 ~~~~~-p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~-W~~~~~~-~~~r~~~~~~~~--~~~iyv~ 493 (534)
T PHA03098 420 KGSPL-PISHYGGCAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNK-WTELSSL-NFPRINASLCIF--NNKIYVV 493 (534)
T ss_pred ecCCC-CccccCceEE-EECCEEEEECCccCCCCCcccceEEEecCCCCc-eeeCCCC-CcccccceEEEE--CCEEEEE
Confidence 43211 1111111222 22466666666431 26677766543 3222211 111111122222 6777777
Q ss_pred eeCC-----CeEEEEec
Q 016982 162 TSTD-----GKCRVFST 173 (379)
Q Consensus 162 ~~~d-----~~i~v~d~ 173 (379)
|+.+ ..+.+||.
T Consensus 494 GG~~~~~~~~~v~~yd~ 510 (534)
T PHA03098 494 GGDKYEYYINEIEVYDD 510 (534)
T ss_pred cCCcCCcccceeEEEeC
Confidence 7754 46777875
No 425
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.57 E-value=0.061 Score=29.47 Aligned_cols=32 Identities=22% Similarity=0.526 Sum_probs=26.5
Q ss_pred cceeEEEeCCCC---cEEEEEecCCeEEEEEecCC
Q 016982 11 QCITCHAWSPDH---AMVAFCPNNNEVHIYKLIQE 42 (379)
Q Consensus 11 ~~i~~~~~s~~~---~~l~~~~~dg~i~i~~~~~~ 42 (379)
++|.++.|||+. .+|+.+-..|.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999854 58888888899999999853
No 426
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.55 E-value=1.1 Score=36.86 Aligned_cols=207 Identities=11% Similarity=0.048 Sum_probs=111.2
Q ss_pred ceeEEEeCCCCcEEEEEecCCeEEEEEecCC-----ceEEEEEecc-----CCCceEEEEEcCCCC------------EE
Q 016982 12 CITCHAWSPDHAMVAFCPNNNEVHIYKLIQE-----KWEKLHVLQK-----HDQIVSGIDWSVRSN------------RI 69 (379)
Q Consensus 12 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~-----~~~~~~~~~~-----~~~~v~~~~~~~~~~------------~l 69 (379)
.-+.|+++|.+.+-++....+...+||.... ....+-++.. .....+.+.|+.... .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 3468999999988787777889999998611 1123333332 123567777764322 35
Q ss_pred EEEeCCCeEEEEeccCCce---eeeEEeecC-CCce-eEEEECC--CCCEEEEEe-CCCeEEEEEeecCCceeEEEEEe-
Q 016982 70 VTVSHDRNSYVWNQEGSEW---VPTLVILRL-NRAA-LCVQWSP--KENKFAVGS-GAKTVCICYYEQENNWWVSKLIR- 140 (379)
Q Consensus 70 ~~~~~d~~i~vw~~~~~~~---~~~~~~~~~-~~~v-~~~~~~~--~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~- 140 (379)
+.+++||+|.-|...-+.. ...+..... ...| ..+++.. .+.+|..+. ..++|.+||-.-.... +...+.
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~-~~g~F~D 182 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPP-LPGSFID 182 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccccc-CCCCccC
Confidence 7778999999998543321 111222111 2333 3444443 244554443 4678888765433210 000000
Q ss_pred ---ecCCc-----------CEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeec--CC
Q 016982 141 ---KRHDS-----------SVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDL--SF 204 (379)
Q Consensus 141 ---~~~~~-----------~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 204 (379)
..-.. .|+-..-.++.+.=+.|.--|.|-+||+ .+..++++.. .-
T Consensus 183 P~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-------------------~G~l~~r~as~g~L 243 (336)
T TIGR03118 183 PALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-------------------NGQLLRRVASSGRL 243 (336)
T ss_pred CCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-------------------CCcEEEEeccCCcc
Confidence 00000 0111111112222222333468888885 4677776632 22
Q ss_pred cceEEEEECC------CCCEEEEEcCCCeEEEEECCCCCc
Q 016982 205 SWAFGVKWSP------SGNTLAYVGHNSMIYFVDDVGPSP 238 (379)
Q Consensus 205 ~~v~~~~~sp------~~~~l~~~~~d~~i~v~d~~~~~~ 238 (379)
...+.|+..| .|.+|+---.||+|..||..++..
T Consensus 244 NaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~ 283 (336)
T TIGR03118 244 NAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQ 283 (336)
T ss_pred cCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCce
Confidence 3457788876 466676555799999999887663
No 427
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=95.50 E-value=1.7 Score=38.66 Aligned_cols=110 Identities=9% Similarity=0.042 Sum_probs=61.9
Q ss_pred CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEec-----cCCCceEEEEEcCCC------CEEEEEe-----
Q 016982 10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQ-----KHDQIVSGIDWSVRS------NRIVTVS----- 73 (379)
Q Consensus 10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~------~~l~~~~----- 73 (379)
-...+.|+|.|||++|++-...|.|++++..++....+..+. ........|+++|+- .+|....
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~ 108 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG 108 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence 456788999999988877654699999986554322222221 124567899999873 2443331
Q ss_pred -----CCCeEEEEeccCC--ce---eeeEEeec--CCCceeEEEECCCCCEEEEEeCC
Q 016982 74 -----HDRNSYVWNQEGS--EW---VPTLVILR--LNRAALCVQWSPKENKFAVGSGA 119 (379)
Q Consensus 74 -----~d~~i~vw~~~~~--~~---~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d 119 (379)
....|.-|.+... .. ...+.... ....-..|.|.|||.++++.+..
T Consensus 109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1233544554321 11 11121110 01123578899999876665543
No 428
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=95.48 E-value=1.6 Score=38.27 Aligned_cols=55 Identities=15% Similarity=0.102 Sum_probs=28.5
Q ss_pred CCcEEEEEecC-----------CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC
Q 016982 21 DHAMVAFCPNN-----------NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD 75 (379)
Q Consensus 21 ~~~~l~~~~~d-----------g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 75 (379)
++.+.+.|+.+ ..+..||..+++|..+.........-.+....-+++..+.|+.+
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 46667777653 24778888887776654321111111111221356666776643
No 429
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=95.40 E-value=1.2 Score=36.35 Aligned_cols=157 Identities=12% Similarity=-0.009 Sum_probs=92.9
Q ss_pred CCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEecccc
Q 016982 97 LNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIK 176 (379)
Q Consensus 97 ~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~ 176 (379)
...-+..+.++ +++...+..+.-+++.|+.+.........+ ...+.-.++.. .|++...+..+.-+.+.|+..
T Consensus 85 ~~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~l--nt~gyaygv~v--sGn~aYVadlddgfLivdvsd- 157 (370)
T COG5276 85 ARDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFL--NTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSD- 157 (370)
T ss_pred hhhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccc--cCCceEEEEEe--cCCEEEEeeccCcEEEEECCC-
Confidence 35566777777 557778878888999999887642222222 12233344444 678888877666677888731
Q ss_pred ccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeee-ecCCeeeEEE
Q 016982 177 GVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAF-RDLPLRDVLF 255 (379)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~i~~~~~ 255 (379)
................-..++.| |++-..+..|+-+.+.|+..+......-.. .+..+.++..
T Consensus 158 --------------pssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~v 221 (370)
T COG5276 158 --------------PSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSV 221 (370)
T ss_pred --------------CCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEe
Confidence 11222223333333444566666 677777778999999999887654222111 1235777777
Q ss_pred ecCCcEEEEEeCCCeEEEEecC
Q 016982 256 VSEKMVIGVGFDCNPMVFAADE 277 (379)
Q Consensus 256 s~~~~~l~~~~d~~~~i~~~~~ 277 (379)
+++--+++.. +..+.+-+.++
T Consensus 222 sdnr~y~vvy-~egvlivd~s~ 242 (370)
T COG5276 222 SDNRAYLVVY-DEGVLIVDVSG 242 (370)
T ss_pred cCCeeEEEEc-ccceEEEecCC
Confidence 7765555543 34444444443
No 430
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.33 E-value=0.024 Score=52.62 Aligned_cols=119 Identities=15% Similarity=0.281 Sum_probs=73.4
Q ss_pred ccCCCceEEEEEcCCC-CEEEEEeCCCeEEEEecc--CCceeeeEEe---ecCCCceeEEEECC---CCCEEEEEeCCCe
Q 016982 51 QKHDQIVSGIDWSVRS-NRIVTVSHDRNSYVWNQE--GSEWVPTLVI---LRLNRAALCVQWSP---KENKFAVGSGAKT 121 (379)
Q Consensus 51 ~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~vw~~~--~~~~~~~~~~---~~~~~~v~~~~~~~---~~~~l~~~~~d~~ 121 (379)
++..+.+..++|.... ..+. -.-|.+.||++. .|+..+.+.. ......+.-+.|.| +.-++..+-.++.
T Consensus 129 kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~ 206 (1283)
T KOG1916|consen 129 KGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGE 206 (1283)
T ss_pred hcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCc
Confidence 4455666667764321 2222 223668888875 3443333322 22344556677766 5567777778899
Q ss_pred EEEEEeecCCceeEEEEEeecCCcCEEEE-----------EEcCCCcEEEEeeCCCeEEEEecccc
Q 016982 122 VCICYYEQENNWWVSKLIRKRHDSSVTSV-----------AWHPNNVFLATTSTDGKCRVFSTFIK 176 (379)
Q Consensus 122 v~i~~~~~~~~~~~~~~~~~~~~~~v~~~-----------~~~p~~~~l~~~~~d~~i~v~d~~~~ 176 (379)
+++.+++... ...+ .+|...+..+ ..+|||+.|++...||.++.|.+.+.
T Consensus 207 i~lL~~~ra~----~~l~-rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~ 267 (1283)
T KOG1916|consen 207 IRLLNINRAL----RSLF-RSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYIT 267 (1283)
T ss_pred eeEeeechHH----HHHH-HhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeee
Confidence 9998776654 2233 4455544433 36899999999999999999987543
No 431
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=95.26 E-value=1.8 Score=37.41 Aligned_cols=96 Identities=15% Similarity=0.163 Sum_probs=51.1
Q ss_pred CCcEEEEEecC-----------CeEEEEEecCCceEEEEEe-ccCCCceEEEEEcCCCCEEEEEeCC-------------
Q 016982 21 DHAMVAFCPNN-----------NEVHIYKLIQEKWEKLHVL-QKHDQIVSGIDWSVRSNRIVTVSHD------------- 75 (379)
Q Consensus 21 ~~~~l~~~~~d-----------g~i~i~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d------------- 75 (379)
++++.+.|+.+ ..+..||..+++|..+... .........+. .-+++..+.|+.+
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~-~~~g~IYviGG~~~~~~~~~~~~~~~ 141 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFS-LHNGQAYFTGGVNKNIFDGYFADLSA 141 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEE-EeCCEEEEEcCcChHHHHHHHhhHhh
Confidence 56777777653 2577889888877665421 11111111111 2356666776653
Q ss_pred --------------------------CeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeC
Q 016982 76 --------------------------RNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSG 118 (379)
Q Consensus 76 --------------------------~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 118 (379)
..+.+||..+.++...-........-.+++ .-++++++.|+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~-~~~~~iyv~GG~ 209 (346)
T TIGR03547 142 ADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIV-HKGNKLLLINGE 209 (346)
T ss_pred cCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEE-EECCEEEEEeee
Confidence 468899998887655432211111112222 235677777765
No 432
>PHA02790 Kelch-like protein; Provisional
Probab=95.15 E-value=0.8 Score=41.54 Aligned_cols=142 Identities=10% Similarity=0.046 Sum_probs=75.0
Q ss_pred CCcEEEEEecC--CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC---CeEEEEeccCCceeeeEEee
Q 016982 21 DHAMVAFCPNN--NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD---RNSYVWNQEGSEWVPTLVIL 95 (379)
Q Consensus 21 ~~~~l~~~~~d--g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~vw~~~~~~~~~~~~~~ 95 (379)
++.+.+.|+.+ ..+..||..+++|..+..+........... -+|+..+.|+.+ ..+..||..++++...-...
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~ 395 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY 395 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC
Confidence 56666777753 357888887777766655543222222222 246666776654 34778998888765432111
Q ss_pred cCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCC-----CeEEE
Q 016982 96 RLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTD-----GKCRV 170 (379)
Q Consensus 96 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d-----~~i~v 170 (379)
........+ .-+++..+.|+ .+.+||.+++. |.....+ .........+.+ +++..+.|+.+ ..+..
T Consensus 396 ~~r~~~~~~--~~~~~IYv~GG---~~e~ydp~~~~-W~~~~~m-~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~ 466 (480)
T PHA02790 396 YPHYKSCAL--VFGRRLFLVGR---NAEFYCESSNT-WTLIDDP-IYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEV 466 (480)
T ss_pred CccccceEE--EECCEEEEECC---ceEEecCCCCc-EeEcCCC-CCCccccEEEEE--CCEEEEECCcCCCcccceEEE
Confidence 111111122 22455556553 46678876543 4433333 111222222222 67888888764 34666
Q ss_pred Eec
Q 016982 171 FST 173 (379)
Q Consensus 171 ~d~ 173 (379)
||.
T Consensus 467 Yd~ 469 (480)
T PHA02790 467 YNN 469 (480)
T ss_pred EEC
Confidence 764
No 433
>PLN02193 nitrile-specifier protein
Probab=95.15 E-value=2.4 Score=38.38 Aligned_cols=148 Identities=11% Similarity=0.116 Sum_probs=69.0
Q ss_pred CcEEEEEecC-------CeEEEEEecCCceEEEEEeccCCC--ceEEEEEcCCCCEEEEEeCC-----CeEEEEeccCCc
Q 016982 22 HAMVAFCPNN-------NEVHIYKLIQEKWEKLHVLQKHDQ--IVSGIDWSVRSNRIVTVSHD-----RNSYVWNQEGSE 87 (379)
Q Consensus 22 ~~~l~~~~~d-------g~i~i~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d-----~~i~vw~~~~~~ 87 (379)
+.+++.|+.+ ..+.+||+.+.+|..+........ ........-++...+.|+.+ ..+..+|+.+.+
T Consensus 176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~ 255 (470)
T PLN02193 176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNE 255 (470)
T ss_pred CEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCE
Confidence 4566666642 247788988876664322111111 11111112234555666644 358889998887
Q ss_pred eeeeEEee--cCCCceeEEEECCCCCEEEEEeCCC-----eEEEEEeecCCceeEEEEEe--ecCCcCEEEEEEcCCCcE
Q 016982 88 WVPTLVIL--RLNRAALCVQWSPKENKFAVGSGAK-----TVCICYYEQENNWWVSKLIR--KRHDSSVTSVAWHPNNVF 158 (379)
Q Consensus 88 ~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~-----~v~i~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~ 158 (379)
+....... +....-.++.. -++++++.|+.++ .+..||+.+.. |....... .........+.+ +++.
T Consensus 256 W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~-W~~~~~~~~~~~~R~~~~~~~~--~gki 331 (470)
T PLN02193 256 WKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKK-WFHCSTPGDSFSIRGGAGLEVV--QGKV 331 (470)
T ss_pred EEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCE-EEeCCCCCCCCCCCCCcEEEEE--CCcE
Confidence 65432211 11111112222 2456666776543 35566655443 22111100 011111112222 5677
Q ss_pred EEEeeCC----CeEEEEec
Q 016982 159 LATTSTD----GKCRVFST 173 (379)
Q Consensus 159 l~~~~~d----~~i~v~d~ 173 (379)
++.++.+ ..+.+||+
T Consensus 332 yviGG~~g~~~~dv~~yD~ 350 (470)
T PLN02193 332 WVVYGFNGCEVDDVHYYDP 350 (470)
T ss_pred EEEECCCCCccCceEEEEC
Confidence 7777655 35778886
No 434
>PLN02153 epithiospecifier protein
Probab=95.04 E-value=2 Score=36.95 Aligned_cols=68 Identities=10% Similarity=0.210 Sum_probs=39.1
Q ss_pred CCcEEEEEecC-------CeEEEEEecCCceEEEEEeccCCC----ceEEEEEcCCCCEEEEEeCC-----CeEEEEecc
Q 016982 21 DHAMVAFCPNN-------NEVHIYKLIQEKWEKLHVLQKHDQ----IVSGIDWSVRSNRIVTVSHD-----RNSYVWNQE 84 (379)
Q Consensus 21 ~~~~l~~~~~d-------g~i~i~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~d-----~~i~vw~~~ 84 (379)
++++++.|+.+ ..+.+||..+.+|........... ....+.+ +++.++.|+.+ ..+.+||..
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 109 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV 109 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence 45667777653 358889988877765543321111 1122222 35566666643 357889998
Q ss_pred CCceee
Q 016982 85 GSEWVP 90 (379)
Q Consensus 85 ~~~~~~ 90 (379)
+.++..
T Consensus 110 t~~W~~ 115 (341)
T PLN02153 110 KNEWTF 115 (341)
T ss_pred CCEEEE
Confidence 887654
No 435
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.91 E-value=0.18 Score=40.05 Aligned_cols=73 Identities=11% Similarity=0.159 Sum_probs=52.2
Q ss_pred ECCCCCEEEEEcCCCeEEEEECCCCCceeee------ee-------eecCCeeeEEEecCCcEEEEEeCCCeEEEEecCC
Q 016982 212 WSPSGNTLAYVGHNSMIYFVDDVGPSPLAQN------VA-------FRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADET 278 (379)
Q Consensus 212 ~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~------~~-------~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~ 278 (379)
+..++.+|++-..+|.+++||+.+.+..... +. .....|..+..+.+|.-|+.-+++..+.|+.+-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L- 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDL- 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecccc-
Confidence 3456888999999999999999887543322 11 234568888899899888877778888887553
Q ss_pred CcEEEEE
Q 016982 279 GIWTFIK 285 (379)
Q Consensus 279 ~~~~~~~ 285 (379)
+.|..+.
T Consensus 97 ~~W~~vs 103 (219)
T PF07569_consen 97 GCWIRVS 103 (219)
T ss_pred ceeEEec
Confidence 3466543
No 436
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.81 E-value=2.5 Score=36.87 Aligned_cols=105 Identities=15% Similarity=0.172 Sum_probs=70.3
Q ss_pred ecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceE--EEeecCCcceEEEEECCCCCE
Q 016982 141 KRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQI--LQLDLSFSWAFGVKWSPSGNT 218 (379)
Q Consensus 141 ~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~sp~~~~ 218 (379)
....++|.++.|++|++.||+--.+..|.+++.-. ...+.. .+-+.....|....|+.+. -
T Consensus 63 m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~----------------d~~~l~~~~~ck~k~~~IlGF~W~~s~-e 125 (657)
T KOG2377|consen 63 MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIP----------------DNSQLEYTQECKTKNANILGFCWTSST-E 125 (657)
T ss_pred ecCCCceeEEEeccCcceEEEEecCceEEEEecCC----------------CchhhHHHHHhccCcceeEEEEEecCe-e
Confidence 34567999999999999999999999999997410 001111 1112224458889998763 4
Q ss_pred EEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE
Q 016982 219 LAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG 263 (379)
Q Consensus 219 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 263 (379)
+|.-... .+-+|-....+..++.++.+...|.=..|.++.+++.
T Consensus 126 ~A~i~~~-G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 126 IAFITDQ-GIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVIL 169 (657)
T ss_pred EEEEecC-CeEEEEEchhhhhhhhhhhcccCccEEEEccccceEe
Confidence 5544433 3666765554444566777888888899999887554
No 437
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=94.72 E-value=2.1 Score=35.68 Aligned_cols=183 Identities=10% Similarity=0.060 Sum_probs=89.6
Q ss_pred eEEEEeccCCceeeeEEeecC----CCceeEEEECCCC-----CEEEEE-eCCCeEEEEEeecCCceeEEEEEe------
Q 016982 77 NSYVWNQEGSEWVPTLVILRL----NRAALCVQWSPKE-----NKFAVG-SGAKTVCICYYEQENNWWVSKLIR------ 140 (379)
Q Consensus 77 ~i~vw~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~-----~~l~~~-~~d~~v~i~~~~~~~~~~~~~~~~------ 140 (379)
+|.+||+.+++.+..+.+..+ .+....+.+.... .++..+ +..+.|.++|+.+++.|.+.....
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 688889998887777765432 3456777776522 233333 234578899998876432211100
Q ss_pred ---------ecCCcCEEEEEEcC---CCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceE
Q 016982 141 ---------KRHDSSVTSVAWHP---NNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAF 208 (379)
Q Consensus 141 ---------~~~~~~v~~~~~~p---~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 208 (379)
......+..++.+| +++.|......+. ++|.+.+. .++....... ......+..+-.......
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~--~L~~~~~~~~--~~~~~~v~~lG~k~~~s~ 189 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTS--VLRDPSLSDA--QALASQVQDLGDKGSQSD 189 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHH--HHCSTT--HH--H-HHHT-EEEEE---SEC
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHH--HhhCcccccc--ccccccceeccccCCCCc
Confidence 01122356666655 5556665543331 23333111 1111111000 000112222211123456
Q ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCCc--eeeeeeee---cCCeeeEEEec--CCcEEEE
Q 016982 209 GVKWSPSGNTLAYVGHNSMIYFVDDVGPSP--LAQNVAFR---DLPLRDVLFVS--EKMVIGV 264 (379)
Q Consensus 209 ~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~--~~~~~~~~---~~~i~~~~~s~--~~~~l~~ 264 (379)
.++++++|.++++--..+.|..|+..+... ....+... -..+.++.+.+ +|.+.+.
T Consensus 190 g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~ 252 (287)
T PF03022_consen 190 GMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVL 252 (287)
T ss_dssp EEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEE
T ss_pred eEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEE
Confidence 788999999888888999999999876321 11222211 23456777777 6655443
No 438
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=94.57 E-value=0.31 Score=42.10 Aligned_cols=164 Identities=10% Similarity=0.036 Sum_probs=96.7
Q ss_pred CCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCc----CEE-EEEEcCCCcEEEEeeCCCeEEEEe
Q 016982 98 NRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDS----SVT-SVAWHPNNVFLATTSTDGKCRVFS 172 (379)
Q Consensus 98 ~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~----~v~-~~~~~p~~~~l~~~~~d~~i~v~d 172 (379)
...+..+-..|||+.+.+-+. ..+.++++....- ...+.. ....+ .|+ .+..-..|..+++++.||.|.-|-
T Consensus 220 ~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l-~~rkl~-~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWF 296 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSL-QIRKLV-DDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWF 296 (733)
T ss_pred ccchHhhEECCCCCEEEEecC-CeEEEEeeccccc-chhhhh-hcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeee
Confidence 356777888999998888775 6788888876542 011222 11111 111 122223456788888999988884
Q ss_pred ccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeee
Q 016982 173 TFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRD 252 (379)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~ 252 (379)
+.|....+ .-..++.+.....++..+.-..+.+-+++-+..|++.++.....+.+...- --..+.-
T Consensus 297 ------dvr~~~~p------~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~--~~~~~~~ 362 (733)
T COG4590 297 ------DVRRDGQP------HLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER--AYQAPQL 362 (733)
T ss_pred ------eeecCCCC------cceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh--hhcCcce
Confidence 33333221 122233333333344444322334456677788888888654444332221 1235667
Q ss_pred EEEecCCcEEEEEeCCCeEEEEecCC
Q 016982 253 VLFVSEKMVIGVGFDCNPMVFAADET 278 (379)
Q Consensus 253 ~~~s~~~~~l~~~~d~~~~i~~~~~~ 278 (379)
+++||.+.+++.-..++++++..++.
T Consensus 363 ~~~Sp~~~~Ll~e~~gki~~~~l~Nr 388 (733)
T COG4590 363 VAMSPNQAYLLSEDQGKIRLAQLENR 388 (733)
T ss_pred eeeCcccchheeecCCceEEEEecCC
Confidence 89999999999888899999887653
No 439
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.53 E-value=1.8 Score=33.82 Aligned_cols=115 Identities=17% Similarity=0.224 Sum_probs=69.1
Q ss_pred ceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC---C---eEEEE---e
Q 016982 12 CITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD---R---NSYVW---N 82 (379)
Q Consensus 12 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~---~i~vw---~ 82 (379)
....++-++. +.|+.+...+.|.+|++.+...+....+..- +.|..+.++..|++|+|--.+ . .+++| +
T Consensus 19 EP~~~c~~g~-d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr 96 (215)
T PF14761_consen 19 EPTAVCCGGP-DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWR 96 (215)
T ss_pred CcceeeccCC-ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhh
Confidence 3344444432 3343334557899999996656777777754 789999999999999986432 1 45654 2
Q ss_pred cc--CCceee---------------------eEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecC
Q 016982 83 QE--GSEWVP---------------------TLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQE 130 (379)
Q Consensus 83 ~~--~~~~~~---------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~ 130 (379)
.. ..+... .++ .+-+.++.+++..|-..-|++|+ ++.+.+|.+...
T Consensus 97 ~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiE-lPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 97 SQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIE-LPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQ 165 (215)
T ss_pred hhcccCCcEEEEEcccccccCCCCccccceEEEE-ecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEE
Confidence 21 111111 111 12345677888888443455555 367888877543
No 440
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.50 E-value=4.3 Score=38.18 Aligned_cols=152 Identities=13% Similarity=0.125 Sum_probs=87.7
Q ss_pred CCEEEEEeCCCeEEEEeccCCceeee----EEe--e--------------cCCCceeEEEECC--CCCEEEEEeCCCeEE
Q 016982 66 SNRIVTVSHDRNSYVWNQEGSEWVPT----LVI--L--------------RLNRAALCVQWSP--KENKFAVGSGAKTVC 123 (379)
Q Consensus 66 ~~~l~~~~~d~~i~vw~~~~~~~~~~----~~~--~--------------~~~~~v~~~~~~~--~~~~l~~~~~d~~v~ 123 (379)
.++++++. .+.|.||+...-...+. +.+ . .....|..|.... ....|+.+.+||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 55666655 57889998764322110 000 0 0112244444333 345788999999999
Q ss_pred EEEeecCC--------ce-------eEEEEEeecCCcCEEEEEEc--CCCcEEEEeeCCCeEEEEeccccccccccccCC
Q 016982 124 ICYYEQEN--------NW-------WVSKLIRKRHDSSVTSVAWH--PNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEG 186 (379)
Q Consensus 124 i~~~~~~~--------~~-------~~~~~~~~~~~~~v~~~~~~--p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 186 (379)
+|..+.-- .. .+...+.......+++++++ ...+++|+++....|.||-.... ..+..
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~-----~~r~~ 202 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALV-----DERFY 202 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecc-----ccccc
Confidence 99763210 00 00011112345578999998 77789999988889999865211 00000
Q ss_pred CccCCcccceEEEeecCCcceEEEEECCCC---C---EEEEEcCCCeEEEEEC
Q 016982 187 TSSDTKFGEQILQLDLSFSWAFGVKWSPSG---N---TLAYVGHNSMIYFVDD 233 (379)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~---~---~l~~~~~d~~i~v~d~ 233 (379)
... .. .+...|.+++|-++. . .|++++-.|.+.+|++
T Consensus 203 ------~~~---s~-~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 203 ------HVP---SH-QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ------ccc---cc-ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 000 11 134558888887743 2 7888889999998887
No 441
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.49 E-value=2.2 Score=34.68 Aligned_cols=184 Identities=11% Similarity=0.101 Sum_probs=103.2
Q ss_pred cceeEEEeCCCCcEEEEEecCC--eEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCce
Q 016982 11 QCITCHAWSPDHAMVAFCPNNN--EVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEW 88 (379)
Q Consensus 11 ~~i~~~~~s~~~~~l~~~~~dg--~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~ 88 (379)
.-...+.|..+|.++-+.+.-| .|+.+|+.+++......+... ----.+....+ +...-.-.++...+||..+-+.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~-~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR-YFGEGITILGD-KLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT---EEEEEEETT-EEEEEESSSSEEEEEETTTTEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc-ccceeEEEECC-EEEEEEecCCeEEEEccccceE
Confidence 3445677766777777776655 788999998865445555432 11123444422 2333345788999999998887
Q ss_pred eeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEe-ecCC---cCEEEEEEcCCCcEEEEeeC
Q 016982 89 VPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIR-KRHD---SSVTSVAWHPNNVFLATTST 164 (379)
Q Consensus 89 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~-~~~~---~~v~~~~~~p~~~~l~~~~~ 164 (379)
+..+.. .+.=+.++ .+++.|+.......++++|..+-+ ..+.+. .... ..++.+.|. +|...|-.-.
T Consensus 123 ~~~~~y---~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~---~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~ 193 (264)
T PF05096_consen 123 IGTFPY---PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFK---EVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQ 193 (264)
T ss_dssp EEEEE----SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-S---EEEEEE-EETTEE---EEEEEEE-TTEEEEEETT
T ss_pred EEEEec---CCcceEEE--cCCCEEEEECCccceEEECCcccc---eEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCC
Confidence 776654 34456666 457777777667778887766544 233331 1111 245556665 5666665555
Q ss_pred CCeEEEEeccccccccccccCCCccCCcccceEEEeec---------------CCcceEEEEECCCCCEEEEEc
Q 016982 165 DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDL---------------SFSWAFGVKWSPSGNTLAYVG 223 (379)
Q Consensus 165 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~v~~~~~sp~~~~l~~~~ 223 (379)
...|...|. .+++.+..+.. ...-.+.+|++|....|...+
T Consensus 194 td~I~~Idp------------------~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 194 TDRIVRIDP------------------ETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp SSEEEEEET------------------TT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CCeEEEEeC------------------CCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 666666664 44554443311 123478999999766555444
No 442
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.47 E-value=1.9 Score=33.99 Aligned_cols=94 Identities=11% Similarity=0.091 Sum_probs=59.3
Q ss_pred eEEEEEcCCCCEEE-EEeCCCeEEEEe--ccCCceeee---EEeec----CCCceeEEEECCCCCEEEEEeCCCeEEEEE
Q 016982 57 VSGIDWSVRSNRIV-TVSHDRNSYVWN--QEGSEWVPT---LVILR----LNRAALCVQWSPKENKFAVGSGAKTVCICY 126 (379)
Q Consensus 57 v~~~~~~~~~~~l~-~~~~d~~i~vw~--~~~~~~~~~---~~~~~----~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~ 126 (379)
-+.++|+.+.+.+. +-+.+-.|.-|| ..++..... +.+.. .....-.++...+|++.+++-..++|...|
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD 239 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence 35789988776654 445566776677 555532211 11111 111223455566788888888888999999
Q ss_pred eecCCceeEEEEEeecCCcCEEEEEEcC
Q 016982 127 YEQENNWWVSKLIRKRHDSSVTSVAWHP 154 (379)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p 154 (379)
..+++ +...+ .-....+++++|--
T Consensus 240 p~tGK---~L~ei-klPt~qitsccFgG 263 (310)
T KOG4499|consen 240 PTTGK---ILLEI-KLPTPQITSCCFGG 263 (310)
T ss_pred CCCCc---EEEEE-EcCCCceEEEEecC
Confidence 98888 45555 44578899999953
No 443
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.37 E-value=4.9 Score=38.31 Aligned_cols=93 Identities=19% Similarity=0.177 Sum_probs=55.3
Q ss_pred cCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEe--------ecCCcceEEEEECCC-
Q 016982 145 SSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL--------DLSFSWAFGVKWSPS- 215 (379)
Q Consensus 145 ~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~v~~~~~sp~- 215 (379)
-.|..+.++|+|++++..+..| |.|..+- .|........+.+..-..+++ ......|..+.|+|.
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP-----~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s 158 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELP-----RRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWS 158 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEec-----cccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCC
Confidence 4688899999999999888765 4454441 000000000000000001111 123457899999995
Q ss_pred --CCEEEEEcCCCeEEEEECCCCCceeeee
Q 016982 216 --GNTLAYVGHNSMIYFVDDVGPSPLAQNV 243 (379)
Q Consensus 216 --~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 243 (379)
+..|+.-..|+.+++||+.......+.+
T Consensus 159 ~~~~~l~vLtsdn~lR~y~~~~~~~p~~v~ 188 (717)
T PF10168_consen 159 ESDSHLVVLTSDNTLRLYDISDPQHPWQVL 188 (717)
T ss_pred CCCCeEEEEecCCEEEEEecCCCCCCeEEE
Confidence 5788888899999999997655443433
No 444
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.21 E-value=4.5 Score=37.23 Aligned_cols=147 Identities=12% Similarity=0.097 Sum_probs=78.1
Q ss_pred cEEEEEecCCeEEEEEecCCceEEEEEec--cCCC--ceEE-EEEcCCCCEEEEEe------CCCeEEEEeccCCceeee
Q 016982 23 AMVAFCPNNNEVHIYKLIQEKWEKLHVLQ--KHDQ--IVSG-IDWSVRSNRIVTVS------HDRNSYVWNQEGSEWVPT 91 (379)
Q Consensus 23 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~--~~~~--~v~~-~~~~~~~~~l~~~~------~d~~i~vw~~~~~~~~~~ 91 (379)
..++.++.++.+.-+|..+++ .+.... .+.. .+.+ .... ++ .++.+. .+|.|.-+|.++++.+-.
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk--~~W~~~~~~~~~~~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGK--VVWSKKNGDYKAGYTITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCC--EEeecccccccccccccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCCCceeEe
Confidence 456677788999999998883 433322 1111 1111 1111 33 455543 267899999998875444
Q ss_pred EEeecCC-----------------------------Cce-eEEEECCCCCEEEEEeCC-----C-----------eEEEE
Q 016982 92 LVILRLN-----------------------------RAA-LCVQWSPKENKFAVGSGA-----K-----------TVCIC 125 (379)
Q Consensus 92 ~~~~~~~-----------------------------~~v-~~~~~~~~~~~l~~~~~d-----~-----------~v~i~ 125 (379)
+...... ..+ ..+++.|...++..+..+ + +|.-.
T Consensus 197 ~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAl 276 (527)
T TIGR03075 197 RYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVAR 276 (527)
T ss_pred ccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEE
Confidence 3222111 011 134566655666665522 1 45556
Q ss_pred EeecCCceeEEEEEeecCCc-------CEEEEEEcCCCc---EEEEeeCCCeEEEEeccc
Q 016982 126 YYEQENNWWVSKLIRKRHDS-------SVTSVAWHPNNV---FLATTSTDGKCRVFSTFI 175 (379)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~-------~v~~~~~~p~~~---~l~~~~~d~~i~v~d~~~ 175 (379)
|+++++..+..+.. .|.. ...-+....+|+ .++.+..+|.+.+.|-..
T Consensus 277 d~~TG~~~W~~Q~~--~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~t 334 (527)
T TIGR03075 277 DPDTGKIKWHYQTT--PHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTN 334 (527)
T ss_pred ccccCCEEEeeeCC--CCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCC
Confidence 77777643332222 2211 111222223564 777899999999999643
No 445
>PLN02193 nitrile-specifier protein
Probab=94.13 E-value=4.3 Score=36.77 Aligned_cols=140 Identities=11% Similarity=0.072 Sum_probs=69.3
Q ss_pred CCcEEEEEecC-----CeEEEEEecCCceEEEEEecc--CCCceEEEEEcCCCCEEEEEeCC-----CeEEEEeccCCce
Q 016982 21 DHAMVAFCPNN-----NEVHIYKLIQEKWEKLHVLQK--HDQIVSGIDWSVRSNRIVTVSHD-----RNSYVWNQEGSEW 88 (379)
Q Consensus 21 ~~~~l~~~~~d-----g~i~i~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d-----~~i~vw~~~~~~~ 88 (379)
++.+.+.|+.+ ..+..||+.+.+|..+..+.. ....-.+++. -+++..+.|+.+ ..+..||+.+.++
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W 306 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKW 306 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence 45666777654 368899999887777655421 1111122222 245556666644 3477888888776
Q ss_pred eeeEEee---cCCCceeEEEECCCCCEEEEEeCC----CeEEEEEeecCCceeEEEEEee-cCCcCEEEEEEcCCCcEEE
Q 016982 89 VPTLVIL---RLNRAALCVQWSPKENKFAVGSGA----KTVCICYYEQENNWWVSKLIRK-RHDSSVTSVAWHPNNVFLA 160 (379)
Q Consensus 89 ~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d----~~v~i~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~ 160 (379)
...-... ........+. -+++.++.++.+ ..+.+||+.+.. |........ .......+++ .-++++++
T Consensus 307 ~~~~~~~~~~~~R~~~~~~~--~~gkiyviGG~~g~~~~dv~~yD~~t~~-W~~~~~~g~~P~~R~~~~~~-~~~~~iyv 382 (470)
T PLN02193 307 FHCSTPGDSFSIRGGAGLEV--VQGKVWVVYGFNGCEVDDVHYYDPVQDK-WTQVETFGVRPSERSVFASA-AVGKHIVI 382 (470)
T ss_pred EeCCCCCCCCCCCCCcEEEE--ECCcEEEEECCCCCccCceEEEECCCCE-EEEeccCCCCCCCcceeEEE-EECCEEEE
Confidence 4332100 0011111122 256777777654 357778776654 322221100 1111111222 22567888
Q ss_pred EeeCC
Q 016982 161 TTSTD 165 (379)
Q Consensus 161 ~~~~d 165 (379)
.|+..
T Consensus 383 ~GG~~ 387 (470)
T PLN02193 383 FGGEI 387 (470)
T ss_pred ECCcc
Confidence 88753
No 446
>PRK10115 protease 2; Provisional
Probab=94.08 E-value=5.7 Score=37.94 Aligned_cols=112 Identities=11% Similarity=0.133 Sum_probs=63.9
Q ss_pred ceEEEEEcCCCCEEEEEeC-C----CeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCC------CeEEE
Q 016982 56 IVSGIDWSVRSNRIVTVSH-D----RNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGA------KTVCI 124 (379)
Q Consensus 56 ~v~~~~~~~~~~~l~~~~~-d----~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~v~i 124 (379)
.+..+.|+|++++|+.+.. + -.|++.|+.++..+... . ...-..++|.+|++.|+....+ ..|+.
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~--i--~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL--L--DNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc--c--cCcceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 4677889999998876532 2 24888999887632221 1 1112569999999877776543 24566
Q ss_pred EEeecCCceeEEEEEeecCCcCEE-EEEEcCCCcEEEEeeC---CCeEEEEec
Q 016982 125 CYYEQENNWWVSKLIRKRHDSSVT-SVAWHPNNVFLATTST---DGKCRVFST 173 (379)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~l~~~~~---d~~i~v~d~ 173 (379)
+++.++... ....+ ........ .+..+.++++++..+. ++.+.+++.
T Consensus 204 h~lgt~~~~-d~lv~-~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 204 HTIGTPASQ-DELVY-EEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred EECCCChhH-CeEEE-eeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 666665211 11222 22222233 3333447776654433 456888874
No 447
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.86 E-value=2.2 Score=37.77 Aligned_cols=61 Identities=8% Similarity=0.024 Sum_probs=46.4
Q ss_pred CCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEec
Q 016982 215 SGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAAD 276 (379)
Q Consensus 215 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~ 276 (379)
...+++.++..|.|++||.-.-. ....+++-+..|..+..+.+|+++.+.....+.+-+..
T Consensus 572 esGyIa~as~kGDirLyDRig~r-AKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKR-AKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred cCceEEEecCCCceeeehhhcch-hhhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 45589999999999999944322 22455666788999999999999987777777776654
No 448
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.79 E-value=1.7 Score=30.95 Aligned_cols=113 Identities=10% Similarity=0.100 Sum_probs=68.1
Q ss_pred eEEEeCCCCcEEEEEecCCeEEEEEecCCc------eEEEEEeccCCCceEEEEEcC---C--CCEEEEEeCCCeEEEEe
Q 016982 14 TCHAWSPDHAMVAFCPNNNEVHIYKLIQEK------WEKLHVLQKHDQIVSGIDWSV---R--SNRIVTVSHDRNSYVWN 82 (379)
Q Consensus 14 ~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~------~~~~~~~~~~~~~v~~~~~~~---~--~~~l~~~~~d~~i~vw~ 82 (379)
..-.|......|++++.-|+|.|++..... ...++.|. -...|++++-.+ + ...|+.|+. ..+..||
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYD 79 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYD 79 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEE
Confidence 344676666788888899999999876431 12334443 345677776443 2 356777665 5799999
Q ss_pred ccCCceeeeEEeecCCCceeEEEECC---CCCEEEEEeCCCeEEEEEeecCC
Q 016982 83 QEGSEWVPTLVILRLNRAALCVQWSP---KENKFAVGSGAKTVCICYYEQEN 131 (379)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~v~i~~~~~~~ 131 (379)
+....- +....-...|.++.+-. ...-++..+.+..|.-||.+..+
T Consensus 80 V~~N~d---~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e 128 (136)
T PF14781_consen 80 VENNSD---LFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE 128 (136)
T ss_pred cccCch---hhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence 988752 22234456777777633 12234444445666666655443
No 449
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=93.68 E-value=0.63 Score=40.31 Aligned_cols=162 Identities=12% Similarity=-0.022 Sum_probs=89.3
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCC----cee-EEEECCCCCEEEEEeCCCeEEEE-Ee
Q 016982 54 DQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNR----AAL-CVQWSPKENKFAVGSGAKTVCIC-YY 127 (379)
Q Consensus 54 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~----~v~-~~~~~~~~~~l~~~~~d~~v~i~-~~ 127 (379)
...|..+-..|||+.+..-+. .++.++++.+.............+ .|+ .+..-.-|.-+.++..||.|.-| |.
T Consensus 220 ~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdv 298 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDV 298 (733)
T ss_pred ccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeee
Confidence 345677888999998877655 678888887664322211111111 122 12222245668888889988877 44
Q ss_pred ecCCceeEEEEEe--ecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCc
Q 016982 128 EQENNWWVSKLIR--KRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFS 205 (379)
Q Consensus 128 ~~~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (379)
+..... -...++ .-...++..+.-..+.+-+++-+.+|++.++.. +.+...-++..-.
T Consensus 299 r~~~~p-~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~s-------------------t~~~~lL~~~~~~ 358 (733)
T COG4590 299 RRDGQP-HLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYS-------------------TSEKLLLFERAYQ 358 (733)
T ss_pred ecCCCC-cceeeeccccCcccceeeccccccceEEEEcCCCceeeeec-------------------ccCcceehhhhhc
Confidence 443310 111110 111122322222222356777777888887752 2222222222223
Q ss_pred ceEEEEECCCCCEEEEEcCCCeEEEEECCCCC
Q 016982 206 WAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPS 237 (379)
Q Consensus 206 ~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~ 237 (379)
.+.-+++||.+.+|++- ..|.++++.+.+..
T Consensus 359 ~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~ 389 (733)
T COG4590 359 APQLVAMSPNQAYLLSE-DQGKIRLAQLENRN 389 (733)
T ss_pred CcceeeeCcccchheee-cCCceEEEEecCCC
Confidence 46778999999999864 45788998877654
No 450
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.59 E-value=4.2 Score=34.82 Aligned_cols=108 Identities=9% Similarity=0.135 Sum_probs=56.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEe-----ecCCCceeEEEECCC----CCEEEEEeCC------C-
Q 016982 57 VSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVI-----LRLNRAALCVQWSPK----ENKFAVGSGA------K- 120 (379)
Q Consensus 57 v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~----~~~l~~~~~d------~- 120 (379)
..+|+|.|+|+.+++ ...|.|++++ ..+.....+.. .........++++|+ +.+.++.+.. .
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 478999999877665 6689999999 44443122111 123456789999994 3333333311 1
Q ss_pred -eEEEEEeecCC-c----eeEEEEEee--cCCcCEEEEEEcCCCcEEEEeeCCC
Q 016982 121 -TVCICYYEQEN-N----WWVSKLIRK--RHDSSVTSVAWHPNNVFLATTSTDG 166 (379)
Q Consensus 121 -~v~i~~~~~~~-~----~~~~~~~~~--~~~~~v~~~~~~p~~~~l~~~~~d~ 166 (379)
.|.-|.+.... . ..+...+.. .....-..+.|.|||.++++.+..+
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~ 135 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG 135 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence 23334443331 1 111112211 1234456799999997777665433
No 451
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=93.58 E-value=3.3 Score=33.59 Aligned_cols=228 Identities=9% Similarity=-0.067 Sum_probs=129.9
Q ss_pred cceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceee
Q 016982 11 QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVP 90 (379)
Q Consensus 11 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~ 90 (379)
.....++-.|||..-.++...+.|--.|..+++ ....--+....-..+..-|||..-++-+.. -|.-.|-++.+...
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGe--v~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~ 138 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGE--VETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTR 138 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCc--eEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEE
Confidence 455677888888888888777777777888774 222222333445678888998776664433 45555655554222
Q ss_pred eEEe--ecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeE
Q 016982 91 TLVI--LRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKC 168 (379)
Q Consensus 91 ~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i 168 (379)
+.+ ...........|.+.|++-+++.. |.---.|-... ..+.+.......-+.|+..|+|..-++.-.+..|
T Consensus 139 -f~lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~~----~i~vfpaPqG~gpyGi~atpdGsvwyaslagnai 212 (353)
T COG4257 139 -FPLPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPARN----VISVFPAPQGGGPYGICATPDGSVWYASLAGNAI 212 (353)
T ss_pred -eecccccCCCcccceeeCCCccEEEeecc-ccceecCcccC----ceeeeccCCCCCCcceEECCCCcEEEEeccccce
Confidence 211 122356778889999998888763 21111111111 2333323334455778899999877776677777
Q ss_pred EEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecC
Q 016982 169 RVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDL 248 (379)
Q Consensus 169 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 248 (379)
-..|.... ..+.+..-+........+--+|.|+.-++....+.+.-||.....-....+.+.+.
T Consensus 213 aridp~~~----------------~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~a 276 (353)
T COG4257 213 ARIDPFAG----------------HAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKA 276 (353)
T ss_pred EEcccccC----------------CcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCC
Confidence 77775211 01111111111222345555778888888777888888886654322233344444
Q ss_pred CeeeEEEecCCcEEE
Q 016982 249 PLRDVLFVSEKMVIG 263 (379)
Q Consensus 249 ~i~~~~~s~~~~~l~ 263 (379)
.-.++.....++.-.
T Consensus 277 rpys~rVD~~grVW~ 291 (353)
T COG4257 277 RPYSMRVDRHGRVWL 291 (353)
T ss_pred CcceeeeccCCcEEe
Confidence 455555555555443
No 452
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=93.57 E-value=4.2 Score=34.75 Aligned_cols=163 Identities=12% Similarity=0.119 Sum_probs=93.4
Q ss_pred CcceeEEEeCCCCcEEEEEecCCe------EEEEEecCC-----ceEE--EEEeccCCC--------ceEEEEEcCCCCE
Q 016982 10 AQCITCHAWSPDHAMVAFCPNNNE------VHIYKLIQE-----KWEK--LHVLQKHDQ--------IVSGIDWSVRSNR 68 (379)
Q Consensus 10 ~~~i~~~~~s~~~~~l~~~~~dg~------i~i~~~~~~-----~~~~--~~~~~~~~~--------~v~~~~~~~~~~~ 68 (379)
-+.+..+.+.|++..+++-+.+|. ++.+++... .... ...+..-.+ ..-+|++.+++.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 357889999965555655667777 666665541 1111 111222111 2347888778888
Q ss_pred EEEEeCC------CeEEEEeccCCceeeeEE-------------eecCCCceeEEEECCCCCEEEEEeC-----CC----
Q 016982 69 IVTVSHD------RNSYVWNQEGSEWVPTLV-------------ILRLNRAALCVQWSPKENKFAVGSG-----AK---- 120 (379)
Q Consensus 69 l~~~~~d------~~i~vw~~~~~~~~~~~~-------------~~~~~~~v~~~~~~~~~~~l~~~~~-----d~---- 120 (379)
+++.-.+ ..|..++.. ++....+. ....+....+++++|+|+.|+++.+ |+
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 7776666 678888876 44333321 1123567889999999997666543 22
Q ss_pred -----eEEEEEeecCCce-eEEE-EEe-ec-----CCcCEEEEEEcCCCcEEEEee-----CCCeEEEEec
Q 016982 121 -----TVCICYYEQENNW-WVSK-LIR-KR-----HDSSVTSVAWHPNNVFLATTS-----TDGKCRVFST 173 (379)
Q Consensus 121 -----~v~i~~~~~~~~~-~~~~-~~~-~~-----~~~~v~~~~~~p~~~~l~~~~-----~d~~i~v~d~ 173 (379)
.++++.++..... .... .+. .. ....+..+.+.+++++|+.-= ....++|+.+
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v 248 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRV 248 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEE
Confidence 1566655543210 0111 111 11 356788999999998666421 2445667665
No 453
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.49 E-value=0.95 Score=35.97 Aligned_cols=79 Identities=13% Similarity=0.185 Sum_probs=53.4
Q ss_pred cceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEE-----Eec-------cCCCceEEEEEcCCCCEEEEEeCCCeE
Q 016982 11 QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLH-----VLQ-------KHDQIVSGIDWSVRSNRIVTVSHDRNS 78 (379)
Q Consensus 11 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~-----~~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i 78 (379)
+++..+. .++++|++-+.+|.+++||+.+.+..... .+. .....|..+.++.+|.-|++-+ +|..
T Consensus 13 s~~~~l~--~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~ 89 (219)
T PF07569_consen 13 SPVSFLE--CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDS 89 (219)
T ss_pred CceEEEE--eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCE
Confidence 3444444 46788988899999999999986311100 111 2446788888888887777655 4778
Q ss_pred EEEeccCCceeeeE
Q 016982 79 YVWNQEGSEWVPTL 92 (379)
Q Consensus 79 ~vw~~~~~~~~~~~ 92 (379)
+.|+..-+.+....
T Consensus 90 y~y~~~L~~W~~vs 103 (219)
T PF07569_consen 90 YSYSPDLGCWIRVS 103 (219)
T ss_pred EEeccccceeEEec
Confidence 88988777665543
No 454
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=93.43 E-value=1.2 Score=38.95 Aligned_cols=82 Identities=10% Similarity=0.099 Sum_probs=55.0
Q ss_pred eccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEc---CC-----------------C
Q 016982 7 HQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWS---VR-----------------S 66 (379)
Q Consensus 7 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~-----------------~ 66 (379)
......+.+++.+|++++.|+...-|.|.++|+.++ ..++.+++..+. .+.|- .. .
T Consensus 304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~--~vvrmWKGYRdA--qc~wi~~~~~~~~~~~~~~~~~~~~~~~ 379 (415)
T PF14655_consen 304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARG--IVVRMWKGYRDA--QCGWIEVPEEGDRDRSNSNSPKSSSRFA 379 (415)
T ss_pred ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCC--hhhhhhccCccc--eEEEEEeecccccccccccccCCCCcce
Confidence 344567899999999999998877899999999887 555556554432 11111 00 1
Q ss_pred CE-EEEEeCCCeEEEEeccCCceeeeE
Q 016982 67 NR-IVTVSHDRNSYVWNQEGSEWVPTL 92 (379)
Q Consensus 67 ~~-l~~~~~d~~i~vw~~~~~~~~~~~ 92 (379)
.+ ++-+-.-|.|.||.++++..+..+
T Consensus 380 l~LvIyaprRg~lEvW~~~~g~Rv~a~ 406 (415)
T PF14655_consen 380 LFLVIYAPRRGILEVWSMRQGPRVAAF 406 (415)
T ss_pred EEEEEEeccCCeEEEEecCCCCEEEEE
Confidence 12 344556788999999888754444
No 455
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.37 E-value=3.5 Score=36.58 Aligned_cols=145 Identities=14% Similarity=0.108 Sum_probs=80.1
Q ss_pred CCCEEEE-EeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCC-------EEEEEeCCCeEEEEEeecCCceeEE
Q 016982 65 RSNRIVT-VSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKEN-------KFAVGSGAKTVCICYYEQENNWWVS 136 (379)
Q Consensus 65 ~~~~l~~-~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~d~~v~i~~~~~~~~~~~~ 136 (379)
+..+|+. +.....++-.|++.|+.+....+ ...+ -+.|.|+.+ .-++|-.+..|.-.|.+...+.-..
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~---~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDL---KDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeec---CCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceee
Confidence 4444443 44445677778888886666543 2333 567777532 2344444555544454443321111
Q ss_pred EEEe-ecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceE-EEeecCCcceEEEEECC
Q 016982 137 KLIR-KRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQI-LQLDLSFSWAFGVKWSP 214 (379)
Q Consensus 137 ~~~~-~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~sp 214 (379)
.... ........+..-. .+-+++.++..|-|++||- .+... ..+.+-...|..+..+.
T Consensus 554 ~esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDR-------------------ig~rAKtalP~lG~aIk~idvta 613 (776)
T COG5167 554 VESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDR-------------------IGKRAKTALPGLGDAIKHIDVTA 613 (776)
T ss_pred eeehhccccccccccccc-cCceEEEecCCCceeeehh-------------------hcchhhhcCcccccceeeeEeec
Confidence 1110 1111222222222 3458999999999999983 22222 22344466788899999
Q ss_pred CCCEEEEEcCCCeEEEEECC
Q 016982 215 SGNTLAYVGHNSMIYFVDDV 234 (379)
Q Consensus 215 ~~~~l~~~~~d~~i~v~d~~ 234 (379)
+|+++++.+ ...+.+.|++
T Consensus 614 ~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 614 NGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred CCcEEEEee-cceEEEEecc
Confidence 999887665 3456666653
No 456
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=93.23 E-value=2.3 Score=36.31 Aligned_cols=69 Identities=14% Similarity=0.260 Sum_probs=41.6
Q ss_pred CCcEEEEEec-----CCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCC----eEEEEeccCCceee
Q 016982 21 DHAMVAFCPN-----NNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDR----NSYVWNQEGSEWVP 90 (379)
Q Consensus 21 ~~~~l~~~~~-----dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~i~vw~~~~~~~~~ 90 (379)
++++.+.|+. ...+..||+.+.+|..+..+.... .........+++..+.|+.++ .+.+||..+.++..
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~ 200 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEP-RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQK 200 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCC-CCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEE
Confidence 4566666664 246888999988887766544221 112222233466667776553 35688988887654
No 457
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.02 E-value=0.15 Score=47.77 Aligned_cols=120 Identities=13% Similarity=0.047 Sum_probs=66.4
Q ss_pred ecCCcCEEEEEEcCCC-cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECC---CC
Q 016982 141 KRHDSSVTSVAWHPNN-VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSP---SG 216 (379)
Q Consensus 141 ~~~~~~v~~~~~~p~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp---~~ 216 (379)
++..+.+-.+.|.... ..+. -.-|.+.|||+..-.-++ ...-.+.........+.-+.|.| +.
T Consensus 129 kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~i-----------q~~l~v~~~~p~gs~~~~V~wcp~~~~~ 195 (1283)
T KOG1916|consen 129 KGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEI-----------QPQLEVTPITPYGSDPQLVSWCPIAVNK 195 (1283)
T ss_pred hcCCCCcccccccccCChHHH--HHhhhhheeehHhhcccc-----------ccceEEeecCcCCCCcceeeeccccccc
Confidence 6677788888885422 1121 234678899974211111 01111222222233455566665 56
Q ss_pred CEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEE-----------ecCCcEEE-EEeCCCeEEEEe
Q 016982 217 NTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLF-----------VSEKMVIG-VGFDCNPMVFAA 275 (379)
Q Consensus 217 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~-----------s~~~~~l~-~~~d~~~~i~~~ 275 (379)
.++..+-.++.+++........ ..+..|...+..++| ||||..++ ...||.+..|..
T Consensus 196 ~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 196 VYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred ceeeeccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 6777777888888877655432 334446655555444 67777666 566776666653
No 458
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.98 E-value=2.8 Score=41.58 Aligned_cols=169 Identities=15% Similarity=0.106 Sum_probs=89.9
Q ss_pred EEEEEcCCC-CEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEE--------CCCCCEEEEEeCCCeEEEEEee
Q 016982 58 SGIDWSVRS-NRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQW--------SPKENKFAVGSGAKTVCICYYE 128 (379)
Q Consensus 58 ~~~~~~~~~-~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~l~~~~~d~~v~i~~~~ 128 (379)
..+-+.|.= +.-+ +.|+.+.+|+.+++.-...+ .+....|..+.. .|.=+++++...--.|.++-+.
T Consensus 82 ~~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~~~--d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~ 157 (1311)
T KOG1900|consen 82 TDMGIFPEIGRAWI--TIDNNLFLWNYESDNELAEY--DGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVS 157 (1311)
T ss_pred eeeccchhhcceEE--EeCCeEEEEEcCCCCccccc--cchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEE
Confidence 344555543 3233 45788999999986533333 333344444433 2222344444444556665443
Q ss_pred cCCceeEEEE----Ee-ecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEecccccccccccc---------CCCccCCccc
Q 016982 129 QENNWWVSKL----IR-KRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKK---------EGTSSDTKFG 194 (379)
Q Consensus 129 ~~~~~~~~~~----~~-~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---------~~~~~~~~~~ 194 (379)
..+....... +. ......|.|+....+|+.+.+|- || .+|.+.-+..+-.... .......++
T Consensus 158 ~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs- 233 (1311)
T KOG1900|consen 158 FDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPS- 233 (1311)
T ss_pred eccccCcccccccceeeecCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhh-
Confidence 3221000111 11 22355788999888888777664 55 4565421111110000 000000011
Q ss_pred ceEEEee-cCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Q 016982 195 EQILQLD-LSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGP 236 (379)
Q Consensus 195 ~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~ 236 (379)
+..+. .+..+|..++.......+.+-+..+.|.+||+...
T Consensus 234 --~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 234 --LLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred --hhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCC
Confidence 22223 45668999999998889999999999999998763
No 459
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=92.86 E-value=5.5 Score=34.06 Aligned_cols=162 Identities=14% Similarity=0.134 Sum_probs=81.8
Q ss_pred CceeEEEECCCCCEEEEEeCCCe------EEEEEeecCC----ceeEEEEEe-ecCCc--------CEEEEEEcCCCcEE
Q 016982 99 RAALCVQWSPKENKFAVGSGAKT------VCICYYEQEN----NWWVSKLIR-KRHDS--------SVTSVAWHPNNVFL 159 (379)
Q Consensus 99 ~~v~~~~~~~~~~~l~~~~~d~~------v~i~~~~~~~----~~~~~~~~~-~~~~~--------~v~~~~~~p~~~~l 159 (379)
+....+.+.+++..+++.+.+|. +..+++.... ......... ....+ ...++++.+++.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 56788888866666666677776 5555554411 100111110 11111 34578887788877
Q ss_pred EEeeCC------CeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcC-----CC--
Q 016982 160 ATTSTD------GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGH-----NS-- 226 (379)
Q Consensus 160 ~~~~~d------~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-----d~-- 226 (379)
++.-.+ ..|..++....-.....-+...... ..+. .-...+...-+|+++|+|+.|+++.+ |+
T Consensus 100 is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~-~~~~---~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~ 175 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPD-ANGT---SGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR 175 (326)
T ss_pred EEeCCccCCCCCCEEEEECCCCcccceEccccccccc-cCcc---ccccCCCCeEEEEECCCCCEEEEEECccccCCCcc
Confidence 776666 6777777531110000000000000 0000 11123556889999999996665532 22
Q ss_pred e-------EEE--EECCCCCc----eeeeeee-----ecCCeeeEEEecCCcEEEE
Q 016982 227 M-------IYF--VDDVGPSP----LAQNVAF-----RDLPLRDVLFVSEKMVIGV 264 (379)
Q Consensus 227 ~-------i~v--~d~~~~~~----~~~~~~~-----~~~~i~~~~~s~~~~~l~~ 264 (379)
. +++ ||..+... ....+.. ....+..+.+-+++++|+-
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 1 444 45544221 1112221 2456888999999998873
No 460
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=92.76 E-value=1.6 Score=33.18 Aligned_cols=30 Identities=13% Similarity=0.294 Sum_probs=24.9
Q ss_pred ceEEEEEcCCC------CEEEEEeCCCeEEEEeccC
Q 016982 56 IVSGIDWSVRS------NRIVTVSHDRNSYVWNQEG 85 (379)
Q Consensus 56 ~v~~~~~~~~~------~~l~~~~~d~~i~vw~~~~ 85 (379)
.|..++|||.| ..|++.+.++.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 68899999965 3688889999999998763
No 461
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=92.68 E-value=7.1 Score=34.88 Aligned_cols=56 Identities=14% Similarity=0.026 Sum_probs=37.2
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEE-----eecCCCceeEEEECCCC
Q 016982 55 QIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLV-----ILRLNRAALCVQWSPKE 110 (379)
Q Consensus 55 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~ 110 (379)
..-..|+|.|+|+.|++--..|.|++++..++....... ..........|+++|+-
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 345799999999877765546999999865543211111 11135678999999874
No 462
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=92.66 E-value=6.8 Score=34.59 Aligned_cols=147 Identities=15% Similarity=0.191 Sum_probs=86.2
Q ss_pred CCEEEEEeCCCeEEEEeccCCcee--eeEEeecCCCceeEEEECC-----CCCEEEEEeCCCeEEEEEeecCCce-----
Q 016982 66 SNRIVTVSHDRNSYVWNQEGSEWV--PTLVILRLNRAALCVQWSP-----KENKFAVGSGAKTVCICYYEQENNW----- 133 (379)
Q Consensus 66 ~~~l~~~~~d~~i~vw~~~~~~~~--~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~v~i~~~~~~~~~----- 133 (379)
...|++|+..|.++||+....... ..+.....+.+|..+..-+ +...||+ -.-..+.+|.+......
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence 368999999999999998665422 1222234567888877643 2334555 44677888887443211
Q ss_pred -eEEEEEeecC--CcCEEEEEEcCC-----CcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCc
Q 016982 134 -WVSKLIRKRH--DSSVTSVAWHPN-----NVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFS 205 (379)
Q Consensus 134 -~~~~~~~~~~--~~~v~~~~~~p~-----~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (379)
.....+ ..| ......++.-|- ..++.+-+.||.+.+|+-. .-....+-...-
T Consensus 116 ~~~L~~~-yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe-------------------~~~f~~~lp~~l 175 (418)
T PF14727_consen 116 QYQLELI-YEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQE-------------------SFAFSRFLPDFL 175 (418)
T ss_pred EEEEEEE-EEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCC-------------------cEEEEEEcCCCC
Confidence 111222 222 223333444332 2577888999999999731 111111111111
Q ss_pred ceEEEEECCCCCEEEEEcCCCeEEEEEC
Q 016982 206 WAFGVKWSPSGNTLAYVGHNSMIYFVDD 233 (379)
Q Consensus 206 ~v~~~~~sp~~~~l~~~~~d~~i~v~d~ 233 (379)
-..-+.|.|.-..+++++.+..+..|..
T Consensus 176 lPgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 176 LPGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred CCcCeEEeecCCEEEEecCceeEEEecH
Confidence 1234678888888999998889998863
No 463
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=92.58 E-value=4.8 Score=32.72 Aligned_cols=205 Identities=9% Similarity=-0.035 Sum_probs=117.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEE
Q 016982 57 VSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVS 136 (379)
Q Consensus 57 v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~ 136 (379)
-..++-+|||..-+++...+.|--.|-.+++.... ..+.......+..-|||..-++-+.. .|.=.|-++.+ .
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~y--pLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~e----v 136 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETY--PLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLE----V 136 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCCCceEEE--ecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccc----e
Confidence 35678889998888888888888888888874332 24555667888889998876664433 33333333333 1
Q ss_pred EEEe---ecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecC-CcceEEEEE
Q 016982 137 KLIR---KRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS-FSWAFGVKW 212 (379)
Q Consensus 137 ~~~~---~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~ 212 (379)
+.+. ...........|.+.|++-.++... .---.| .....+..+... ......++.
T Consensus 137 t~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G-~yGrLd-------------------Pa~~~i~vfpaPqG~gpyGi~a 196 (353)
T COG4257 137 TRFPLPLEHADANLETAVFDPWGNLWFTGQIG-AYGRLD-------------------PARNVISVFPAPQGGGPYGICA 196 (353)
T ss_pred EEeecccccCCCcccceeeCCCccEEEeeccc-cceecC-------------------cccCceeeeccCCCCCCcceEE
Confidence 1111 2334567788899999888877531 110111 112223333222 234577888
Q ss_pred CCCCCEEEEEcCCCeEEEEECCCCCceeeeee-eecCCeeeEEEecCCcEEEE-EeCCCeEEEEecCCCcEEEEEEecc
Q 016982 213 SPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVA-FRDLPLRDVLFVSEKMVIGV-GFDCNPMVFAADETGIWTFIKFLDE 289 (379)
Q Consensus 213 sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~-~~d~~~~i~~~~~~~~~~~~~~~~~ 289 (379)
.|+|..-++.-.+..|-..|.......+.... ........+--+|.|+.-++ ...+.+..|+.... .|........
T Consensus 197 tpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~-sW~eypLPgs 274 (353)
T COG4257 197 TPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVT-SWIEYPLPGS 274 (353)
T ss_pred CCCCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccc-cceeeeCCCC
Confidence 99999877766777777777666532211111 11223344555567776553 33445555554333 3666554443
No 464
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.51 E-value=0.014 Score=50.26 Aligned_cols=145 Identities=12% Similarity=0.175 Sum_probs=96.0
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEE-eCCCeEEEEEeecCCceeEE
Q 016982 58 SGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVG-SGAKTVCICYYEQENNWWVS 136 (379)
Q Consensus 58 ~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~v~i~~~~~~~~~~~~ 136 (379)
....|-|.+.-++.++.+..+..||-.... ... ...++....++|..++..+++. -..+.+.+||+++...
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~agq~---~le-~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt---- 109 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAGQV---ILE-LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT---- 109 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhcce---ecc-cCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH----
Confidence 455678877668888888888888855432 111 2345677888898888766654 4578999999987752
Q ss_pred EEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCC
Q 016982 137 KLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSG 216 (379)
Q Consensus 137 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 216 (379)
..+..+....-.-+.|++....++.+...+.+.|++. .+.+.+...-.|...++++++.+.+
T Consensus 110 qqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynh------------------gtsR~iiv~Gkh~RRgtq~av~lEd 171 (615)
T KOG2247|consen 110 QQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNH------------------GTSRRIIVMGKHQRRGTQIAVTLED 171 (615)
T ss_pred HHHhccCcchHHHHhhccCCccccccccccceEEEec------------------cchhhhhhhcccccceeEEEecccc
Confidence 2221222222333789998888999999999999985 3333333333367778999999876
Q ss_pred CEEEEEcCCCeEE
Q 016982 217 NTLAYVGHNSMIY 229 (379)
Q Consensus 217 ~~l~~~~~d~~i~ 229 (379)
.. +.++.|..+.
T Consensus 172 ~v-il~dcd~~L~ 183 (615)
T KOG2247|consen 172 YV-ILCDCDNTLS 183 (615)
T ss_pred ee-eecCcHHHHH
Confidence 54 4445554433
No 465
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=92.40 E-value=6.3 Score=33.63 Aligned_cols=105 Identities=10% Similarity=0.086 Sum_probs=48.5
Q ss_pred CCCEEEEEeCC-----CeEEEEeccCCcee---eeEEeecCCCceeEEEECCCCCEEEEEeC-----CCeEEEEEeecCC
Q 016982 65 RSNRIVTVSHD-----RNSYVWNQEGSEWV---PTLVILRLNRAALCVQWSPKENKFAVGSG-----AKTVCICYYEQEN 131 (379)
Q Consensus 65 ~~~~l~~~~~d-----~~i~vw~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~v~i~~~~~~~ 131 (379)
++..++.|+.+ ..+..+|+.+.++. ......+....-.+++. -++++.+.|+. ...+..||+.+..
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 45556666654 34667787776641 11110111111112222 24666666664 2346667766543
Q ss_pred ceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCe----EEEEec
Q 016982 132 NWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGK----CRVFST 173 (379)
Q Consensus 132 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~----i~v~d~ 173 (379)
|.....+ .. .......+...++++++.|+.++. +.+||+
T Consensus 151 -W~~~~~~-p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~ 193 (323)
T TIGR03548 151 -WFELPDF-PG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSP 193 (323)
T ss_pred -eeECCCC-CC-CCCCcceEEEECCEEEEEcCCCCccccceEEEec
Confidence 3332222 11 111112222336778888876543 456765
No 466
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.28 E-value=3 Score=41.39 Aligned_cols=162 Identities=12% Similarity=0.089 Sum_probs=87.4
Q ss_pred eCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEE--------ECCCCCEEEEEcCCCeEEEEECC
Q 016982 163 STDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVK--------WSPSGNTLAYVGHNSMIYFVDDV 234 (379)
Q Consensus 163 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~sp~~~~l~~~~~d~~i~v~d~~ 234 (379)
+.|+.+.+|+. .++.....+.+-...|..+. |-|.=++++.-+.--.|.++-+.
T Consensus 96 TiDn~L~lWny------------------~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~ 157 (1311)
T KOG1900|consen 96 TIDNNLFLWNY------------------ESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVS 157 (1311)
T ss_pred EeCCeEEEEEc------------------CCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEE
Confidence 45888999997 33333444444344444432 22333444444445556666332
Q ss_pred C----CCc--ee--eeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccc
Q 016982 235 G----PSP--LA--QNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEA 306 (379)
Q Consensus 235 ~----~~~--~~--~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (379)
- ... .. ..+...+..|.++....+|+.+.+|.|+.++-+.+.....|--.+.-........ -..+.+.
T Consensus 158 ~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~----ls~lvPs 233 (1311)
T KOG1900|consen 158 FDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSV----LSSLVPS 233 (1311)
T ss_pred eccccCcccccccceeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhH----HHHhhhh
Confidence 1 110 00 1122235568888888899999999999776555544444543221100000000 0000011
Q ss_pred cceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCC
Q 016982 307 FGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLES 370 (379)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~ 370 (379)
+.. ....|.++|..++ ..... ..+.+=+.-|+|++|++..
T Consensus 234 ~~~-------------------~~~~~~dpI~qi~-ID~SR----~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 234 LLS-------------------VPGSSKDPIRQIT-IDNSR----NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred hhc-------------------CCCCCCCcceeeE-ecccc----ceeeeeccCceEEEEEccC
Confidence 111 1136788999999 54433 6899999999999999976
No 467
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=92.17 E-value=1.2 Score=41.23 Aligned_cols=73 Identities=14% Similarity=0.254 Sum_probs=45.0
Q ss_pred CCCcEEEEEecCCeEEEEEecC----C-ceEEEEEecc--------------------CCCceEEEEEcC----CCCEEE
Q 016982 20 PDHAMVAFCPNNNEVHIYKLIQ----E-KWEKLHVLQK--------------------HDQIVSGIDWSV----RSNRIV 70 (379)
Q Consensus 20 ~~~~~l~~~~~dg~i~i~~~~~----~-~~~~~~~~~~--------------------~~~~v~~~~~~~----~~~~l~ 70 (379)
++...|+++..||.+...+... + .+... .+.. ....+..+++++ +..+|+
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 234 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEE-LFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLF 234 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE-----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEE-EeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEE
Confidence 4667788888999988888764 1 11111 1111 123455666666 668999
Q ss_pred EEeCCCeEEEEeccCCceeeeEE
Q 016982 71 TVSHDRNSYVWNQEGSEWVPTLV 93 (379)
Q Consensus 71 ~~~~d~~i~vw~~~~~~~~~~~~ 93 (379)
+.+.|+++++||+.+++++....
T Consensus 235 tl~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 235 TLSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EEETTSEEEEEETTTTCEEEEEE
T ss_pred EEeCCCeEEEEECCCCeEEEEec
Confidence 99999999999999999765553
No 468
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.13 E-value=0.021 Score=49.28 Aligned_cols=136 Identities=15% Similarity=0.262 Sum_probs=91.5
Q ss_pred EEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEE-EEEeCCCeEEEEeccCCceeeeEE
Q 016982 15 CHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRI-VTVSHDRNSYVWNQEGSEWVPTLV 93 (379)
Q Consensus 15 ~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~ 93 (379)
...|-|.+.-++.++.+..+..||-... ....+. .++....++|.-++..+ +.+-..+.+.+||+.+... ..+.
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq---~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqLE 113 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQ---VILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQLE 113 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhcc---eecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHHh
Confidence 4567887777888888888999987653 322222 24456678888887654 4455678899999987532 1222
Q ss_pred eecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEE
Q 016982 94 ILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLA 160 (379)
Q Consensus 94 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 160 (379)
. +....-.-+.|++-...++.+...|.+.+++..+... .... ..|...+.++++.+.+..+.
T Consensus 114 ~-gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~---iiv~-Gkh~RRgtq~av~lEd~vil 175 (615)
T KOG2247|consen 114 S-GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRR---IIVM-GKHQRRGTQIAVTLEDYVIL 175 (615)
T ss_pred c-cCcchHHHHhhccCCccccccccccceEEEeccchhh---hhhh-cccccceeEEEecccceeee
Confidence 1 1122222378898888899998899999998877652 2222 33888999999998765443
No 469
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=92.12 E-value=8.4 Score=34.40 Aligned_cols=31 Identities=26% Similarity=0.338 Sum_probs=22.3
Q ss_pred cceeeeeeecccCCcccceEEEeecCceEEEEeCCC
Q 016982 335 NCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLES 370 (379)
Q Consensus 335 ~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~ 370 (379)
..|.+++ ..+.. +.|++...+|.|.+|++..
T Consensus 190 ~~I~~v~-~d~~r----~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVA-VDPSR----RLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEE-EETTT----TEEEEEESSE-EEEEEE-S
T ss_pred hceeeEE-ecCCc----CEEEEEeCCCcEEEEEEeC
Confidence 3488888 44433 7999999999999999974
No 470
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.87 E-value=12 Score=35.77 Aligned_cols=75 Identities=12% Similarity=0.213 Sum_probs=51.9
Q ss_pred CCceeEEEECCCCCEEEEEeCCCeEEEEEeecC----------CceeEEEEEe-------ecCCcCEEEEEEcCC---Cc
Q 016982 98 NRAALCVQWSPKENKFAVGSGAKTVCICYYEQE----------NNWWVSKLIR-------KRHDSSVTSVAWHPN---NV 157 (379)
Q Consensus 98 ~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~----------~~~~~~~~~~-------~~~~~~v~~~~~~p~---~~ 157 (379)
.-.|..+.++|+|..++..+..|. .|..+... ......+.+. ......|..+.|+|. +.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 357889999999999999887654 44334221 1111122211 234567899999996 47
Q ss_pred EEEEeeCCCeEEEEec
Q 016982 158 FLATTSTDGKCRVFST 173 (379)
Q Consensus 158 ~l~~~~~d~~i~v~d~ 173 (379)
.|+.-+.|+.+++||+
T Consensus 163 ~l~vLtsdn~lR~y~~ 178 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDI 178 (717)
T ss_pred eEEEEecCCEEEEEec
Confidence 8999999999999998
No 471
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=91.85 E-value=5.1 Score=32.36 Aligned_cols=143 Identities=13% Similarity=0.095 Sum_probs=74.4
Q ss_pred EEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeC-C--CeEEEEEeec---CCceeEEE-EEeecCCcCEEEE
Q 016982 78 SYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSG-A--KTVCICYYEQ---ENNWWVSK-LIRKRHDSSVTSV 150 (379)
Q Consensus 78 i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--~~v~i~~~~~---~~~~~~~~-~~~~~~~~~v~~~ 150 (379)
-.+||+.+++..+.. .....-+.+-.+-+||+++.+|+. + ..+++++... ...|.... .+ .....-...
T Consensus 48 s~~yD~~tn~~rpl~--v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m--~~~RWYpT~ 123 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLT--VQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDM--QSGRWYPTA 123 (243)
T ss_pred EEEEecCCCcEEecc--CCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccc--cCCCccccc
Confidence 468999988754432 223334445567889999999876 2 3477776544 11111111 11 222333445
Q ss_pred EEcCCCcEEEEeeCCCe-EEEEeccccccccccccCCCccCCcccceEEEe--ecCCcceEEEEECCCCCEEEEEcCCCe
Q 016982 151 AWHPNNVFLATTSTDGK-CRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL--DLSFSWAFGVKWSPSGNTLAYVGHNSM 227 (379)
Q Consensus 151 ~~~p~~~~l~~~~~d~~-i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~~~~~d~~ 227 (379)
.--|||+.|+.|+.... ..+|.-.. ..... .....+... ......-..+...|+|++++.+..+.
T Consensus 124 ~~L~DG~vlIvGG~~~~t~E~~P~~~------~~~~~-----~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s- 191 (243)
T PF07250_consen 124 TTLPDGRVLIVGGSNNPTYEFWPPKG------PGPGP-----VTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS- 191 (243)
T ss_pred eECCCCCEEEEeCcCCCcccccCCcc------CCCCc-----eeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc-
Confidence 55679999999887632 23332100 00000 000000000 01112234567789999999887654
Q ss_pred EEEEECCCCC
Q 016982 228 IYFVDDVGPS 237 (379)
Q Consensus 228 i~v~d~~~~~ 237 (379)
.|||..+.+
T Consensus 192 -~i~d~~~n~ 200 (243)
T PF07250_consen 192 -IIYDYKTNT 200 (243)
T ss_pred -EEEeCCCCe
Confidence 567877664
No 472
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=91.48 E-value=1.1 Score=23.96 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=18.6
Q ss_pred CcceEEEEECCCCCEEEEEc-CC--CeEEEE
Q 016982 204 FSWAFGVKWSPSGNTLAYVG-HN--SMIYFV 231 (379)
Q Consensus 204 ~~~v~~~~~sp~~~~l~~~~-~d--~~i~v~ 231 (379)
...-....|||||+.|+.++ .+ |.-.||
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 44567899999999988765 33 444444
No 473
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.35 E-value=5.9 Score=39.46 Aligned_cols=34 Identities=18% Similarity=0.352 Sum_probs=28.8
Q ss_pred ccCcceeEEEeCCCCcEEEEEecCCeEEEEEecC
Q 016982 8 QFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQ 41 (379)
Q Consensus 8 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~ 41 (379)
+.......++|+|...++|.+..+|.|++|-...
T Consensus 33 G~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 33 GFPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCCCCcceeeccccceEEEEEecccEEEecccc
Confidence 3456777899999999999999999999997654
No 474
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=91.21 E-value=0.85 Score=24.41 Aligned_cols=32 Identities=31% Similarity=0.490 Sum_probs=21.3
Q ss_pred eeccCcceeEEEeCCCCcEEEEEec-C--CeEEEE
Q 016982 6 VHQFAQCITCHAWSPDHAMVAFCPN-N--NEVHIY 37 (379)
Q Consensus 6 ~~~~~~~i~~~~~s~~~~~l~~~~~-d--g~i~i~ 37 (379)
+......-....|||||+.|+..+. + |...||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3445667788999999998887765 3 555554
No 475
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.97 E-value=5.7 Score=35.49 Aligned_cols=26 Identities=15% Similarity=0.046 Sum_probs=20.4
Q ss_pred ceeEEEECCCCCEEEEEeCCCeEEEE
Q 016982 100 AALCVQWSPKENKFAVGSGAKTVCIC 125 (379)
Q Consensus 100 ~v~~~~~~~~~~~l~~~~~d~~v~i~ 125 (379)
.|..+..++.|..++..+.+|.+.++
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVME 130 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEE
Confidence 46778889999998888888866543
No 476
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.51 E-value=12 Score=33.65 Aligned_cols=76 Identities=8% Similarity=0.010 Sum_probs=49.9
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEe---------ccCCceeeeEE---------eecCCCceeEEEECCCC---CEEE
Q 016982 56 IVSGIDWSVRSNRIVTVSHDRNSYVWN---------QEGSEWVPTLV---------ILRLNRAALCVQWSPKE---NKFA 114 (379)
Q Consensus 56 ~v~~~~~~~~~~~l~~~~~d~~i~vw~---------~~~~~~~~~~~---------~~~~~~~v~~~~~~~~~---~~l~ 114 (379)
.|..+..++.|..++-++.+|.+.++= +++++..-... .....-.+..++|+|+. ..+.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 466788899999888888888654432 12332111111 11122346788999975 5778
Q ss_pred EEeCCCeEEEEEeecCC
Q 016982 115 VGSGAKTVCICYYEQEN 131 (379)
Q Consensus 115 ~~~~d~~v~i~~~~~~~ 131 (379)
.-+.|..+++||+....
T Consensus 185 iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPT 201 (741)
T ss_pred EEecCcEEEEEecCCcc
Confidence 88889999999987654
No 477
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=90.51 E-value=8.4 Score=31.42 Aligned_cols=153 Identities=10% Similarity=0.092 Sum_probs=85.5
Q ss_pred CceeEEEECCCCCEEEEEeCCC--eEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEecccc
Q 016982 99 RAALCVQWSPKENKFAVGSGAK--TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIK 176 (379)
Q Consensus 99 ~~v~~~~~~~~~~~l~~~~~d~--~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~ 176 (379)
.-...+.|..+|.++-+.+.-| .|+.+|+.+++ ..+.......---..++.. +++.....-.++...+||.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~---~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~--- 117 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGK---VLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDP--- 117 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSS---EEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEET---
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCc---EEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEcc---
Confidence 3445677766787777777766 57888888876 2332212222223344544 3445555567899999996
Q ss_pred ccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeee--c---CCee
Q 016982 177 GVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFR--D---LPLR 251 (379)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~--~---~~i~ 251 (379)
.+.+.+.++... +.-+.++ .+++.|+.+.....++++|..+-+. ...+... + ..++
T Consensus 118 ---------------~tl~~~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~-~~~i~V~~~g~pv~~LN 178 (264)
T PF05096_consen 118 ---------------NTLKKIGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKE-VRTIQVTDNGRPVSNLN 178 (264)
T ss_dssp ---------------TTTEEEEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SE-EEEEE-EETTEE---EE
T ss_pred ---------------ccceEEEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccce-EEEEEEEECCEECCCcE
Confidence 566777777543 4456776 4577787777788999999776543 3443322 2 2355
Q ss_pred eEEEecCCcEEE-EEeCCCeEEEEecCC
Q 016982 252 DVLFVSEKMVIG-VGFDCNPMVFAADET 278 (379)
Q Consensus 252 ~~~~s~~~~~l~-~~~d~~~~i~~~~~~ 278 (379)
.+.|- +|.+.| .=....|...+...+
T Consensus 179 ELE~i-~G~IyANVW~td~I~~Idp~tG 205 (264)
T PF05096_consen 179 ELEYI-NGKIYANVWQTDRIVRIDPETG 205 (264)
T ss_dssp EEEEE-TTEEEEEETTSSEEEEEETTT-
T ss_pred eEEEE-cCEEEEEeCCCCeEEEEeCCCC
Confidence 56665 576666 333444444444433
No 478
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=90.15 E-value=19 Score=35.04 Aligned_cols=160 Identities=14% Similarity=0.144 Sum_probs=0.0
Q ss_pred CcceeEEEeCC-CCcEEEEEecCCeEEEEEe---cCCceEEEEEeccCCCce------E----EEEEcCCCCEEEEEeCC
Q 016982 10 AQCITCHAWSP-DHAMVAFCPNNNEVHIYKL---IQEKWEKLHVLQKHDQIV------S----GIDWSVRSNRIVTVSHD 75 (379)
Q Consensus 10 ~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~---~~~~~~~~~~~~~~~~~v------~----~~~~~~~~~~l~~~~~d 75 (379)
..+...++|+| +.+.||+-...|...||++ .............+.+.| . .+.|.++.+.|+.++.
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r- 223 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR- 223 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-
Q ss_pred CeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCE----EEEE
Q 016982 76 RNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSV----TSVA 151 (379)
Q Consensus 76 ~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v----~~~~ 151 (379)
..+.++|+++......+........|.++.-+|...-.+..-....|...++..... .....+.-.|.... ..+.
T Consensus 224 ~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~~~~-~~~~llSwkH~~d~~D~tLrl~ 302 (765)
T PF10214_consen 224 SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKSSSE-KLTRLLSWKHFRDPEDPTLRLS 302 (765)
T ss_pred CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccCCCC-CeeeeeecccccCCCCCceEEE
Q ss_pred EcCC-C---cEEEEeeCCCeEEEE
Q 016982 152 WHPN-N---VFLATTSTDGKCRVF 171 (379)
Q Consensus 152 ~~p~-~---~~l~~~~~d~~i~v~ 171 (379)
.... + -.++..-....+.+|
T Consensus 303 ~~~~~~~~~~~~lyS~~~~~v~v~ 326 (765)
T PF10214_consen 303 VQKVGDTDFVVFLYSRLNPLVYVY 326 (765)
T ss_pred EEEcCCCEEEEEEEcCCCCcEEEE
No 479
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=90.05 E-value=7.9 Score=30.36 Aligned_cols=51 Identities=10% Similarity=0.052 Sum_probs=36.7
Q ss_pred CEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeC
Q 016982 67 NRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSG 118 (379)
Q Consensus 67 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 118 (379)
+.|+.+.....|.+|++.+........ ...-+.|..+.++..|+++++--.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~-F~Tv~~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCT-FSTVGRVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEE-EcchhheeEEEeccccceEEEEEe
Confidence 455444566789999999554444433 344589999999999999998643
No 480
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=89.43 E-value=11 Score=31.30 Aligned_cols=218 Identities=9% Similarity=0.011 Sum_probs=112.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeccC------CceeeeEEeec-----CCCceeEEEECCCCC------------EE
Q 016982 57 VSGIDWSVRSNRIVTVSHDRNSYVWNQEG------SEWVPTLVILR-----LNRAALCVQWSPKEN------------KF 113 (379)
Q Consensus 57 v~~~~~~~~~~~l~~~~~d~~i~vw~~~~------~~~~~~~~~~~-----~~~~v~~~~~~~~~~------------~l 113 (379)
-..|+++|.+.+-++....+...+||... .+. ....+.. .....+.+.|+.... .+
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~-L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDP-LVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccc-eEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 46799999998888877778899999861 111 1122111 124567777775322 36
Q ss_pred EEEeCCCeEEEEEeecCCce--eEEEEEeecCCc-CEEEEEEcCC--CcEEEE-eeCCCeEEEEeccccccccccc-cCC
Q 016982 114 AVGSGAKTVCICYYEQENNW--WVSKLIRKRHDS-SVTSVAWHPN--NVFLAT-TSTDGKCRVFSTFIKGVDIKEK-KEG 186 (379)
Q Consensus 114 ~~~~~d~~v~i~~~~~~~~~--~~~~~~~~~~~~-~v~~~~~~p~--~~~l~~-~~~d~~i~v~d~~~~~~~~~~~-~~~ 186 (379)
+.+++||+|.-|........ .....+...... ....+++... +.+|.. --..++|.|||-.-....+... ..+
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 77889999999985433210 001112112222 3345555533 344444 3468899999852111110000 000
Q ss_pred CccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeee--ecCCeeeEEEec------C
Q 016982 187 TSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAF--RDLPLRDVLFVS------E 258 (379)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--~~~~i~~~~~s~------~ 258 (379)
..+..-..--++.+.+ .-.|+...-.++++.=+.+..-|.|-+||+... +++.+.. .-...+.|+..| .
T Consensus 184 ~iPagyAPFnIqnig~-~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~--l~~r~as~g~LNaPWG~a~APa~FG~~s 260 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGG-TLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ--LLRRVASSGRLNAPWGLAIAPESFGSLS 260 (336)
T ss_pred CCCCCCCCcceEEECC-eEEEEEEecCCcccccccCCCcceEEEEcCCCc--EEEEeccCCcccCCceeeeChhhhCCCC
Confidence 0000000001111111 112333333444443344555688999997664 4455531 223456677765 4
Q ss_pred CcEEEEE-eCCCeEEEEecCC
Q 016982 259 KMVIGVG-FDCNPMVFAADET 278 (379)
Q Consensus 259 ~~~l~~~-~d~~~~i~~~~~~ 278 (379)
|.+|++- .|++|..|+....
T Consensus 261 g~lLVGNFGDG~InaFD~~sG 281 (336)
T TIGR03118 261 GALLVGNFGDGTINAYDPQSG 281 (336)
T ss_pred CCeEEeecCCceeEEecCCCC
Confidence 6788743 4889999987654
No 481
>PRK13615 lipoprotein LpqB; Provisional
Probab=89.13 E-value=18 Score=33.37 Aligned_cols=162 Identities=9% Similarity=0.006 Sum_probs=91.4
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEE
Q 016982 58 SGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSK 137 (379)
Q Consensus 58 ~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~ 137 (379)
.+++.++++..++....++.+.++...... ..+ ......+.-+|.++| .+-+.-.....++......... ...
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~~~~--~~~---~~~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~-~~v 409 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGDRDA--VLL---DTRPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVG-HPV 409 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCCCcc--eee---ccCCccccCcCcCCC-CEEEEeCCCceEEEEecCCCce-EEe
Confidence 788999999998888777878777665222 111 123456777888887 4555444334444443321111 111
Q ss_pred EEeecCCcCEEEEEEcCCCcEEEEeeC---CCeEEEEeccccccccccccCCCccCCcc-cceEEEeecCCcceEEEEEC
Q 016982 138 LIRKRHDSSVTSVAWHPNNVFLATTST---DGKCRVFSTFIKGVDIKEKKEGTSSDTKF-GEQILQLDLSFSWAFGVKWS 213 (379)
Q Consensus 138 ~~~~~~~~~v~~~~~~p~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s 213 (379)
.....-...|..+..++||-.++.-.. .++|.+--+. |....+ ... ... ..+......+.++.|.
T Consensus 410 ~v~~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~------R~~~~P----~~L~~~p-~~l~~~l~~v~sl~W~ 478 (557)
T PRK13615 410 AVSWTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIV------RDGGVP----TSLTTTP-LELLASPGTPLDATWV 478 (557)
T ss_pred eccccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEE------eCCCcc----eEeeecc-EEcccCcCcceeeEEc
Confidence 111223457999999999977665432 4567665541 110000 000 111 1221123378999999
Q ss_pred CCCCEEEEEc---CCCeEEEEECCCCC
Q 016982 214 PSGNTLAYVG---HNSMIYFVDDVGPS 237 (379)
Q Consensus 214 p~~~~l~~~~---~d~~i~v~d~~~~~ 237 (379)
.++.+++.+. .+..+++..+....
T Consensus 479 ~~~~laVl~~~~~~~~~v~~v~v~g~~ 505 (557)
T PRK13615 479 DELDVATLTLAPDGERQVELHQVGGPS 505 (557)
T ss_pred CCCEEEEEeccCCCCceEEEEECCCcc
Confidence 9998866652 34567777776543
No 482
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.87 E-value=26 Score=35.18 Aligned_cols=32 Identities=13% Similarity=0.192 Sum_probs=26.8
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEeccCCc
Q 016982 56 IVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSE 87 (379)
Q Consensus 56 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~ 87 (379)
....++|+|.-.+++.+...|.|+++-...-+
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~~~ve 68 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQPGVE 68 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEecccceE
Confidence 45678999999999999999999999765544
No 483
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=88.60 E-value=14 Score=35.12 Aligned_cols=30 Identities=17% Similarity=0.405 Sum_probs=24.3
Q ss_pred CcceeEEEeCCCCcEEEEEecCCeEEEEEe
Q 016982 10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKL 39 (379)
Q Consensus 10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~ 39 (379)
.+.|-+.+||.|.+.++....+..|.+++-
T Consensus 112 ~nGIvaa~wS~DE~~~cvvt~~r~il~~~k 141 (1243)
T COG5290 112 SNGIVAASWSADEKTWCVVTSTREILLFDK 141 (1243)
T ss_pred cCceEEEeeccCCceEEEEEcCceEEEEec
Confidence 678889999999997777777778888764
No 484
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=88.26 E-value=9.6 Score=29.01 Aligned_cols=35 Identities=6% Similarity=0.111 Sum_probs=27.2
Q ss_pred cceeeeeeecccC--CcccceEEEeecCceEEEEeCCC
Q 016982 335 NCINCIVPLREAG--SSRITRFTTSGLDGKIVTWDLES 370 (379)
Q Consensus 335 ~~v~~~~~~~~~~--~~~~~~l~t~~~Dg~v~iW~~~~ 370 (379)
..|.+++ ++|.| .....+||....+|.|.||.-..
T Consensus 86 ~~vv~~a-WSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAA-WSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEE-ECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 3788888 77755 23356999999999999998763
No 485
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=88.05 E-value=5.8 Score=26.20 Aligned_cols=48 Identities=6% Similarity=-0.102 Sum_probs=31.3
Q ss_pred CCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEE
Q 016982 224 HNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVF 273 (379)
Q Consensus 224 ~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~ 273 (379)
.+|.+.-||..+++. ..+...-.-.+.+++++|+.++..+.-..-+|.
T Consensus 35 ~~GRll~ydp~t~~~--~vl~~~L~fpNGVals~d~~~vlv~Et~~~Ri~ 82 (89)
T PF03088_consen 35 PTGRLLRYDPSTKET--TVLLDGLYFPNGVALSPDESFVLVAETGRYRIL 82 (89)
T ss_dssp --EEEEEEETTTTEE--EEEEEEESSEEEEEE-TTSSEEEEEEGGGTEEE
T ss_pred CCcCEEEEECCCCeE--EEehhCCCccCeEEEcCCCCEEEEEeccCceEE
Confidence 368899999888652 333333345689999999998887766555544
No 486
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=87.80 E-value=15 Score=30.60 Aligned_cols=96 Identities=9% Similarity=0.222 Sum_probs=59.1
Q ss_pred CCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEe------CCCeEEEEeccCCceeeeEEe--ecCCCcee
Q 016982 31 NNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVS------HDRNSYVWNQEGSEWVPTLVI--LRLNRAAL 102 (379)
Q Consensus 31 dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~~i~vw~~~~~~~~~~~~~--~~~~~~v~ 102 (379)
-..|.+||..+.+|.... .+-.+.|+++.|..+.+.++.|. ....+..||+.+..+...-.. ..-.++|.
T Consensus 15 C~~lC~yd~~~~qW~~~g--~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPG--NGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVT 92 (281)
T ss_pred CCEEEEEECCCCEeecCC--CCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEE
Confidence 357999999987554432 23567899999986666666664 345688999998875443220 12347788
Q ss_pred EEEECC-CCC-EEEEEe-CCCeEEEEEee
Q 016982 103 CVQWSP-KEN-KFAVGS-GAKTVCICYYE 128 (379)
Q Consensus 103 ~~~~~~-~~~-~l~~~~-~d~~v~i~~~~ 128 (379)
.+.+.. |+. ..+.|. .++...+..++
T Consensus 93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~d 121 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSANGSTFLMKYD 121 (281)
T ss_pred EEEeeccCCceEEEeceecCCCceEEEEc
Confidence 877743 343 443443 34554554443
No 487
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=87.52 E-value=14 Score=29.95 Aligned_cols=136 Identities=11% Similarity=0.094 Sum_probs=71.3
Q ss_pred EEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeC-C--CeEEEEeccC----CceeeeEEeecCCCceeEEEE
Q 016982 34 VHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSH-D--RNSYVWNQEG----SEWVPTLVILRLNRAALCVQW 106 (379)
Q Consensus 34 i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--~~i~vw~~~~----~~~~~~~~~~~~~~~v~~~~~ 106 (379)
-.+||+.+++.+.+... ..--+.+-.+.+||+.|.+|+. + ..+++++... ..+............-.+...
T Consensus 48 s~~yD~~tn~~rpl~v~--td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~ 125 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQ--TDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATT 125 (243)
T ss_pred EEEEecCCCcEEeccCC--CCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceE
Confidence 45788888755554332 2223444567899999998874 2 3478887654 122111110112223334445
Q ss_pred CCCCCEEEEEeCCCe-EEEEEeecCCc-eeEEEEEee----cCCcCEEEEEEcCCCcEEEEeeCCCeEEEEec
Q 016982 107 SPKENKFAVGSGAKT-VCICYYEQENN-WWVSKLIRK----RHDSSVTSVAWHPNNVFLATTSTDGKCRVFST 173 (379)
Q Consensus 107 ~~~~~~l~~~~~d~~-v~i~~~~~~~~-~~~~~~~~~----~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~ 173 (379)
-|||+.|+.|+.... ..+|.-..... ......+.. ....-.-.+...|+|++|+.+..+. .|||.
T Consensus 126 L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~ 196 (243)
T PF07250_consen 126 LPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDY 196 (243)
T ss_pred CCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeC
Confidence 678999999987643 33333211110 000111100 1112223566688999999887654 45675
No 488
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=87.49 E-value=5.3 Score=37.11 Aligned_cols=66 Identities=20% Similarity=0.148 Sum_probs=38.4
Q ss_pred CCCCEEEEEeCCCeEEEEEeec---CCceeEEEEEeec--------------------CCcCEEEEEEcC----CCcEEE
Q 016982 108 PKENKFAVGSGAKTVCICYYEQ---ENNWWVSKLIRKR--------------------HDSSVTSVAWHP----NNVFLA 160 (379)
Q Consensus 108 ~~~~~l~~~~~d~~v~i~~~~~---~~~~~~~~~~~~~--------------------~~~~v~~~~~~p----~~~~l~ 160 (379)
++...++++..||.+....... .... ........ .......+++++ +..+++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~-~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 234 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSV-WSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLF 234 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS--EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCe-eEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEE
Confidence 4677888888999988877654 1111 11111011 123455666666 678999
Q ss_pred EeeCCCeEEEEecc
Q 016982 161 TTSTDGKCRVFSTF 174 (379)
Q Consensus 161 ~~~~d~~i~v~d~~ 174 (379)
+.+.|+.+|+||+.
T Consensus 235 tl~~D~~LRiW~l~ 248 (547)
T PF11715_consen 235 TLSRDHTLRIWSLE 248 (547)
T ss_dssp EEETTSEEEEEETT
T ss_pred EEeCCCeEEEEECC
Confidence 99999999999984
No 489
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=86.86 E-value=19 Score=31.02 Aligned_cols=97 Identities=7% Similarity=0.030 Sum_probs=47.8
Q ss_pred CCcEEEEEec-CCeEEEEEec--CCceEEEEEeccC-CCceEEEEEcCCCCEEEEEeCC-----------CeEEEEeccC
Q 016982 21 DHAMVAFCPN-NNEVHIYKLI--QEKWEKLHVLQKH-DQIVSGIDWSVRSNRIVTVSHD-----------RNSYVWNQEG 85 (379)
Q Consensus 21 ~~~~l~~~~~-dg~i~i~~~~--~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d-----------~~i~vw~~~~ 85 (379)
++++.++|+. ...+..+|+. .++|..+..+... .... +++ .-+++..+.|+.+ ..+..||..+
T Consensus 17 ~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~-~~~-~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~ 94 (346)
T TIGR03547 17 GDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQA-VAA-AIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKK 94 (346)
T ss_pred CCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccc-eEE-EECCEEEEEeCCCCCCCCCcceecccEEEEECCC
Confidence 4555565554 3467777763 3445555554321 1111 222 2345566666642 2477889888
Q ss_pred CceeeeEEeecCCCceeEEEECCCCCEEEEEeCC
Q 016982 86 SEWVPTLVILRLNRAALCVQWSPKENKFAVGSGA 119 (379)
Q Consensus 86 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 119 (379)
.++............-.+....-++++.+.|+.+
T Consensus 95 ~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 95 NSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 8765543111111111111112367777887754
No 490
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.52 E-value=30 Score=32.77 Aligned_cols=154 Identities=19% Similarity=0.234 Sum_probs=75.9
Q ss_pred ceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEE-eccCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-ccCCcee
Q 016982 12 CITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHV-LQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWN-QEGSEWV 89 (379)
Q Consensus 12 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~-~~~~~~~ 89 (379)
.+-.+.|+.+..+|+. ..+|++++|++.....+.... .......|..+.+..+|-.+++ .+|.+.+-+ ..... .
T Consensus 85 ~lI~mgWs~~eeLI~v-~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt--~~g~v~~i~~~~~~~-~ 160 (829)
T KOG2280|consen 85 ELIGMGWSDDEELICV-QKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAVLT--VSGQVILINGVEEPK-L 160 (829)
T ss_pred CeeeecccCCceEEEE-eccceEEEeecchhhhcccccccccccCceeEEEEecCceEEEe--cCCcEEEEcCCCcch-h
Confidence 7778999977665554 588999999997642222101 1223345666666666644443 345544433 22211 1
Q ss_pred eeEEeec-CCCceeEEEECCCCC---EEEEEe-CCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC
Q 016982 90 PTLVILR-LNRAALCVQWSPKEN---KFAVGS-GAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST 164 (379)
Q Consensus 90 ~~~~~~~-~~~~v~~~~~~~~~~---~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 164 (379)
..+...+ ..-+..|-...+++. .++-.. ..+ ..++....... ....+ ......+..+..+|+.++|+.-..
T Consensus 161 ~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~--q~~~~-~~~~~~~~ki~VS~n~~~laLyt~ 236 (829)
T KOG2280|consen 161 RKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRV--QLHAL-SWPNSSVVKISVSPNRRFLALYTE 236 (829)
T ss_pred hhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccc--ccccc-CCCCceEEEEEEcCCcceEEEEec
Confidence 1110000 011112222222211 111111 011 11222222210 11111 122366788999999999999999
Q ss_pred CCeEEEEec
Q 016982 165 DGKCRVFST 173 (379)
Q Consensus 165 d~~i~v~d~ 173 (379)
.|.+.+-+.
T Consensus 237 ~G~i~~vs~ 245 (829)
T KOG2280|consen 237 TGKIWVVSI 245 (829)
T ss_pred CCcEEEEec
Confidence 999988875
No 491
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=86.44 E-value=18 Score=30.37 Aligned_cols=84 Identities=11% Similarity=0.067 Sum_probs=0.0
Q ss_pred CCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEE--------------------eCCCeEEE
Q 016982 21 DHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTV--------------------SHDRNSYV 80 (379)
Q Consensus 21 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--------------------~~d~~i~v 80 (379)
+|++-++-+..|.|.-+|.++++.+.+..+++... .++|. |++++++ ....-|.+
T Consensus 212 dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~r---GL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~v 286 (335)
T TIGR03032 212 QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTR---GLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAV 286 (335)
T ss_pred CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCc---cccee--CCEEEEEeccccCCCCcCCCchhhhhhhhcccEEE
Q ss_pred EeccCCceeeeEEeecCCCceeEEEECCC
Q 016982 81 WNQEGSEWVPTLVILRLNRAALCVQWSPK 109 (379)
Q Consensus 81 w~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 109 (379)
-|+.++..+..+.+.+.-..+.+++.-|.
T Consensus 287 idl~tG~vv~~l~feg~v~EifdV~vLPg 315 (335)
T TIGR03032 287 IDLNSGDVVHWLRFEGVIEEIYDVAVLPG 315 (335)
T ss_pred EECCCCCEEEEEEeCCceeEEEEEEEecC
No 492
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=86.30 E-value=10 Score=27.21 Aligned_cols=106 Identities=8% Similarity=0.120 Sum_probs=63.4
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeccCCc-----eeeeEEeecCCCceeEEEECC-----CCCEEEEEeCCCeEEEEEeec
Q 016982 60 IDWSVRSNRIVTVSHDRNSYVWNQEGSE-----WVPTLVILRLNRAALCVQWSP-----KENKFAVGSGAKTVCICYYEQ 129 (379)
Q Consensus 60 ~~~~~~~~~l~~~~~d~~i~vw~~~~~~-----~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~v~i~~~~~ 129 (379)
-.|......|+.++.-++|.|++..... ....+........|++++-.+ +...|+.|+. ..+..||+..
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~ 82 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVEN 82 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEccc
Confidence 3455555678888888899999876432 112223344567777776443 3456777775 5688999987
Q ss_pred CCceeEEEEEeecCCcCEEEEEEcC----CCcEEEEeeCCCeEEEEe
Q 016982 130 ENNWWVSKLIRKRHDSSVTSVAWHP----NNVFLATTSTDGKCRVFS 172 (379)
Q Consensus 130 ~~~~~~~~~~~~~~~~~v~~~~~~p----~~~~l~~~~~d~~i~v~d 172 (379)
... .+.+.-.+.+.++.+-. +..++++| -+..|.-||
T Consensus 83 N~d-----~Fyke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd 123 (136)
T PF14781_consen 83 NSD-----LFYKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFD 123 (136)
T ss_pred Cch-----hhhhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeC
Confidence 752 22244556777777632 22344444 455666665
No 493
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=85.70 E-value=19 Score=29.90 Aligned_cols=91 Identities=9% Similarity=0.223 Sum_probs=56.0
Q ss_pred CeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEe------CCCeEEEEEeecCCceeEEEEEee----cCCc
Q 016982 76 RNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGS------GAKTVCICYYEQENNWWVSKLIRK----RHDS 145 (379)
Q Consensus 76 ~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~~v~i~~~~~~~~~~~~~~~~~----~~~~ 145 (379)
..|++||..+.++...- .+-.+.|+++.|..+.++++.|. ....+-.||+.... -..+.. .-.+
T Consensus 16 ~~lC~yd~~~~qW~~~g--~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~----w~~~~~~~s~~ipg 89 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPG--NGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT----WSSLGGGSSNSIPG 89 (281)
T ss_pred CEEEEEECCCCEeecCC--CCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe----eeecCCcccccCCC
Confidence 35999999998876654 34678999999986666666664 23456677776654 222211 2347
Q ss_pred CEEEEEEcC-CC-cEEEEee-C--CCeEEEEe
Q 016982 146 SVTSVAWHP-NN-VFLATTS-T--DGKCRVFS 172 (379)
Q Consensus 146 ~v~~~~~~p-~~-~~l~~~~-~--d~~i~v~d 172 (379)
+|..+.+.. |. +..+.|. . +..|..||
T Consensus 90 pv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~d 121 (281)
T PF12768_consen 90 PVTALTFISNDGSNFWVAGRSANGSTFLMKYD 121 (281)
T ss_pred cEEEEEeeccCCceEEEeceecCCCceEEEEc
Confidence 788887743 22 4444443 2 33466665
No 494
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=84.38 E-value=3.4 Score=20.12 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=20.5
Q ss_pred cceeEEEeCCCCcEEEEEecCCeEEEEE
Q 016982 11 QCITCHAWSPDHAMVAFCPNNNEVHIYK 38 (379)
Q Consensus 11 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~ 38 (379)
..|.+++..+ ++++++...+.+++|.
T Consensus 2 E~i~aia~g~--~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGD--SWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccC--CEEEEEeCCCeEEecC
Confidence 4688888865 5888888888999873
No 495
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=83.76 E-value=12 Score=36.34 Aligned_cols=87 Identities=15% Similarity=0.132 Sum_probs=53.6
Q ss_pred EEEEe-CCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEE-eeCCC-----eEEEEeccccccccccccC
Q 016982 113 FAVGS-GAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLAT-TSTDG-----KCRVFSTFIKGVDIKEKKE 185 (379)
Q Consensus 113 l~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~-~~~d~-----~i~v~d~~~~~~~~~~~~~ 185 (379)
||... ..+.|.+-|...... +.+...+..++...+|+|||+.|+. .+.++ .|.+-|+.
T Consensus 321 iAfv~~~~~~L~~~D~dG~n~----~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~----------- 385 (912)
T TIGR02171 321 LAFRNDVTGNLAYIDYTKGAS----RAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLN----------- 385 (912)
T ss_pred EEEEEcCCCeEEEEecCCCCc----eEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehh-----------
Confidence 44444 335788878777652 2222356788999999999999987 44333 47777762
Q ss_pred CCccCCcccceEEEeecCCcceEEEEECCCCCEEE
Q 016982 186 GTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLA 220 (379)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 220 (379)
..+.-+..+...+..|..-...++|..++
T Consensus 386 ------t~~~~~vkl~ve~aaiprwrv~e~gdt~i 414 (912)
T TIGR02171 386 ------ASGSGLVKLPVENAAIPRWRVLENGDTVI 414 (912)
T ss_pred ------ccCCCceEeecccccccceEecCCCCeEE
Confidence 33444444554455666666666666543
No 496
>PRK13615 lipoprotein LpqB; Provisional
Probab=83.68 E-value=37 Score=31.49 Aligned_cols=154 Identities=5% Similarity=-0.028 Sum_probs=88.1
Q ss_pred eEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccC-CceeeeE
Q 016982 14 TCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEG-SEWVPTL 92 (379)
Q Consensus 14 ~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~-~~~~~~~ 92 (379)
.+++.++++..+|....++.++++..... ....+. ...++.-.|.+++ .+-+...+...++..... +.....-
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~~~---~~~~~~--~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~v~ 410 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGDRD---AVLLDT--RPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHPVA 410 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCCCc---ceeecc--CCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEEee
Confidence 77899999999888877777777765532 222222 2346777888887 554444333344444332 3322211
Q ss_pred EeecCCCceeEEEECCCCCEEEEEeC---CCeEEEEEeecCCc--eeE-EEEEe-ecCCcCEEEEEEcCCCcEEEEee--
Q 016982 93 VILRLNRAALCVQWSPKENKFAVGSG---AKTVCICYYEQENN--WWV-SKLIR-KRHDSSVTSVAWHPNNVFLATTS-- 163 (379)
Q Consensus 93 ~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~v~i~~~~~~~~--~~~-~~~~~-~~~~~~v~~~~~~p~~~~l~~~~-- 163 (379)
......+.|..+..|+||..++.-.. .+.|.+--+..... ..+ ..... ......+.++.|..++.+.+.+.
T Consensus 411 v~~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~laVl~~~~ 490 (557)
T PRK13615 411 VSWTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELDVATLTLAP 490 (557)
T ss_pred ccccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCEEEEEeccC
Confidence 11112368999999999988776543 35676644433221 112 12111 11234889999998888766552
Q ss_pred -CCCeEEEEec
Q 016982 164 -TDGKCRVFST 173 (379)
Q Consensus 164 -~d~~i~v~d~ 173 (379)
.+..+++..+
T Consensus 491 ~~~~~v~~v~v 501 (557)
T PRK13615 491 DGERQVELHQV 501 (557)
T ss_pred CCCceEEEEEC
Confidence 2344555544
No 497
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=83.42 E-value=33 Score=30.67 Aligned_cols=30 Identities=27% Similarity=0.390 Sum_probs=24.5
Q ss_pred cCEEEEEEcCCCcEEEEeeCCCeEEEEecc
Q 016982 145 SSVTSVAWHPNNVFLATTSTDGKCRVFSTF 174 (379)
Q Consensus 145 ~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~ 174 (379)
..|..++..+..+.+++.+.++.|.+|++.
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~ 219 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLG 219 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEe
Confidence 348999999888999999999999999984
No 498
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=83.17 E-value=4 Score=19.94 Aligned_cols=26 Identities=15% Similarity=0.147 Sum_probs=18.0
Q ss_pred ceeEEEeCCCCcEEEEEecCCeEEEE
Q 016982 12 CITCHAWSPDHAMVAFCPNNNEVHIY 37 (379)
Q Consensus 12 ~i~~~~~s~~~~~l~~~~~dg~i~i~ 37 (379)
....++.+++|+++++=+....|++|
T Consensus 3 ~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 3 YPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp SEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 34667777788777776666676654
No 499
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=82.80 E-value=5.6 Score=21.38 Aligned_cols=31 Identities=13% Similarity=0.224 Sum_probs=20.9
Q ss_pred CCCcEEEEEe-cCCeEEEEEecCCceEEEEEecc
Q 016982 20 PDHAMVAFCP-NNNEVHIYKLIQEKWEKLHVLQK 52 (379)
Q Consensus 20 ~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~~ 52 (379)
|++++|.++. .++.|.++|..+. +.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~--~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATN--KVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCC--eEEEEEEC
Confidence 5777666654 4789999998776 45444443
No 500
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=82.50 E-value=58 Score=32.88 Aligned_cols=179 Identities=13% Similarity=0.026 Sum_probs=92.0
Q ss_pred eEEEEeccCCceeeeEEeecCCCceeEEEEC-----CC----CCEEEEEeC---------CCeEEEEEeec-----CC--
Q 016982 77 NSYVWNQEGSEWVPTLVILRLNRAALCVQWS-----PK----ENKFAVGSG---------AKTVCICYYEQ-----EN-- 131 (379)
Q Consensus 77 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~----~~~l~~~~~---------d~~v~i~~~~~-----~~-- 131 (379)
.|.+-+..+.+.+..+.+. ...-+.++... .. ..+|++|.. .|.+.++|+-. ++
T Consensus 1005 ~i~LisP~sw~vi~~iefq-~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~ 1083 (1366)
T KOG1896|consen 1005 SIQLISPESWEVIDKIEFQ-ENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPF 1083 (1366)
T ss_pred eeEEecCCccccccccccC-ccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCCCc
Confidence 4555555555555554432 23334444432 11 246777752 58899999754 11
Q ss_pred -ceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEE-EeecCCcceEE
Q 016982 132 -NWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQIL-QLDLSFSWAFG 209 (379)
Q Consensus 132 -~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~ 209 (379)
...+.........++|..++=- +|.++ ++ ....|.+|++. +....+- .|. .-++.-
T Consensus 1084 t~~KlKel~~eE~KGtVsavceV-~G~l~-~~-~GqKI~v~~l~-----------------r~~~ligVaFi--D~~~yv 1141 (1366)
T KOG1896|consen 1084 TKNKLKELYIEEQKGTVSAVCEV-RGHLL-SS-QGQKIIVRKLD-----------------RDSELIGVAFI--DLPLYV 1141 (1366)
T ss_pred ccceeeeeehhhcccceEEEEEe-ccEEE-Ec-cCcEEEEEEec-----------------cCCcceeeEEe--ccceeE
Confidence 1122233335566777776532 55544 33 34578899861 1122111 111 111222
Q ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeee--ecCCeeeEEEecCCc---EEEEEeCCCeEEEEecCC
Q 016982 210 VKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAF--RDLPLRDVLFVSEKM---VIGVGFDCNPMVFAADET 278 (379)
Q Consensus 210 ~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--~~~~i~~~~~s~~~~---~l~~~~d~~~~i~~~~~~ 278 (379)
....--+++++.|.--..|.+.-.+.....+..+.. ..-.+++..|--||. ++++-.++++++|.+...
T Consensus 1142 ~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~Pe 1215 (1366)
T KOG1896|consen 1142 HSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYAPE 1215 (1366)
T ss_pred EehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeCCC
Confidence 222223566666666666776655443322222221 123478888887775 455778889999887654
Done!