Query 016983
Match_columns 379
No_of_seqs 415 out of 2894
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 07:01:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016983.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016983hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i32_A Heat resistant RNA depe 100.0 4.9E-45 1.7E-49 349.3 26.9 269 61-346 2-271 (300)
2 3eaq_A Heat resistant RNA depe 100.0 2E-36 6.8E-41 275.7 24.9 206 62-268 6-212 (212)
3 2db3_A ATP-dependent RNA helic 100.0 2.2E-35 7.5E-40 296.2 21.1 203 1-207 215-421 (434)
4 3sqw_A ATP-dependent RNA helic 100.0 1.1E-33 3.9E-38 293.5 21.6 214 1-214 187-418 (579)
5 2j0s_A ATP-dependent RNA helic 100.0 1.2E-33 4.2E-38 279.6 20.2 213 1-216 191-405 (410)
6 3i5x_A ATP-dependent RNA helic 100.0 4.8E-33 1.7E-37 287.1 21.8 214 1-214 238-469 (563)
7 2i4i_A ATP-dependent RNA helic 100.0 1.1E-32 3.8E-37 272.8 18.4 205 1-207 187-396 (417)
8 3fht_A ATP-dependent RNA helic 100.0 7.3E-32 2.5E-36 266.0 23.3 215 4-221 184-407 (412)
9 1s2m_A Putative ATP-dependent 100.0 6.4E-32 2.2E-36 266.1 22.4 211 2-216 176-387 (400)
10 3eiq_A Eukaryotic initiation f 100.0 1.5E-32 5E-37 271.4 16.6 212 2-216 196-409 (414)
11 1xti_A Probable ATP-dependent 100.0 3.2E-31 1.1E-35 259.8 23.2 210 4-215 168-379 (391)
12 2hjv_A ATP-dependent RNA helic 100.0 3.2E-31 1.1E-35 231.2 19.3 155 58-213 6-161 (163)
13 3pey_A ATP-dependent RNA helic 100.0 9.5E-31 3.2E-35 256.0 24.6 216 4-222 161-386 (395)
14 2rb4_A ATP-dependent RNA helic 100.0 2.3E-31 7.7E-36 234.7 17.1 161 58-219 4-172 (175)
15 1hv8_A Putative ATP-dependent 100.0 5.6E-31 1.9E-35 255.2 20.9 205 2-214 160-365 (367)
16 3fmp_B ATP-dependent RNA helic 100.0 6.9E-33 2.4E-37 280.7 4.9 214 4-220 251-473 (479)
17 1t5i_A C_terminal domain of A 100.0 1E-30 3.6E-35 230.2 16.9 155 59-214 3-159 (172)
18 2p6n_A ATP-dependent RNA helic 100.0 5.3E-31 1.8E-35 236.1 13.8 167 38-208 8-176 (191)
19 1fuk_A Eukaryotic initiation f 100.0 1.7E-30 6E-35 226.8 14.8 156 60-216 2-159 (165)
20 1fuu_A Yeast initiation factor 100.0 6.8E-32 2.3E-36 264.6 5.1 211 2-215 175-387 (394)
21 2jgn_A DBX, DDX3, ATP-dependen 100.0 3.7E-30 1.2E-34 229.5 12.8 153 57-209 15-168 (185)
22 2v1x_A ATP-dependent DNA helic 100.0 4.4E-29 1.5E-33 259.4 18.9 199 1-203 177-383 (591)
23 2z0m_A 337AA long hypothetical 100.0 8.3E-29 2.8E-33 237.4 17.1 194 2-207 142-335 (337)
24 3fho_A ATP-dependent RNA helic 100.0 2.5E-29 8.7E-34 257.0 10.8 213 4-219 275-496 (508)
25 2yjt_D ATP-dependent RNA helic 99.9 1.7E-30 5.9E-35 228.1 0.0 156 60-216 2-159 (170)
26 1oyw_A RECQ helicase, ATP-depe 100.0 4E-27 1.4E-31 241.6 22.3 194 2-204 152-353 (523)
27 3oiy_A Reverse gyrase helicase 100.0 3.9E-28 1.3E-32 241.1 13.9 193 1-212 161-383 (414)
28 1tf5_A Preprotein translocase 99.9 5.6E-28 1.9E-32 254.8 6.4 126 68-195 411-546 (844)
29 4ddu_A Reverse gyrase; topoiso 99.9 9.4E-26 3.2E-30 248.6 14.5 204 1-223 218-523 (1104)
30 2xau_A PRE-mRNA-splicing facto 99.9 4.2E-25 1.4E-29 235.9 13.5 177 10-196 231-445 (773)
31 2whx_A Serine protease/ntpase/ 99.9 5E-26 1.7E-30 237.5 5.3 179 2-206 289-493 (618)
32 3l9o_A ATP-dependent RNA helic 99.9 4E-24 1.4E-28 235.7 19.8 198 1-202 302-606 (1108)
33 2fsf_A Preprotein translocase 99.9 3.3E-25 1.1E-29 233.3 9.2 127 67-195 419-584 (853)
34 1gku_B Reverse gyrase, TOP-RG; 99.9 4.2E-25 1.4E-29 243.1 7.2 206 6-224 190-487 (1054)
35 1yks_A Genome polyprotein [con 99.9 2.3E-25 7.7E-30 223.9 3.1 176 5-206 114-314 (440)
36 3o8b_A HCV NS3 protease/helica 99.9 9.7E-25 3.3E-29 227.5 7.5 187 1-219 329-543 (666)
37 1nkt_A Preprotein translocase 99.9 5.1E-24 1.7E-28 224.7 12.6 127 68-196 439-619 (922)
38 2xgj_A ATP-dependent RNA helic 99.9 6.7E-23 2.3E-27 224.2 21.7 197 1-202 204-508 (1010)
39 2p6r_A Afuhel308 helicase; pro 99.9 2.8E-23 9.5E-28 220.0 17.5 198 2-212 151-404 (702)
40 4a2p_A RIG-I, retinoic acid in 99.9 3.5E-23 1.2E-27 211.8 16.9 124 73-198 372-512 (556)
41 2d7d_A Uvrabc system protein B 99.9 6.7E-23 2.3E-27 215.6 18.8 175 19-203 385-565 (661)
42 2zj8_A DNA helicase, putative 99.9 2.9E-23 9.9E-28 220.5 15.7 199 2-213 151-404 (720)
43 3jux_A Protein translocase sub 99.9 8.4E-23 2.9E-27 211.5 17.6 204 22-235 411-632 (822)
44 2va8_A SSO2462, SKI2-type heli 99.9 8.3E-23 2.8E-27 216.7 17.5 198 2-212 158-425 (715)
45 2ykg_A Probable ATP-dependent 99.9 1E-24 3.5E-29 230.2 2.7 129 72-202 379-524 (696)
46 1c4o_A DNA nucleotide excision 99.9 1.6E-22 5.5E-27 212.8 19.3 174 19-203 379-559 (664)
47 2wv9_A Flavivirin protease NS2 99.9 4.5E-24 1.5E-28 224.4 5.7 175 6-206 348-548 (673)
48 2jlq_A Serine protease subunit 99.9 3.2E-23 1.1E-27 208.9 10.1 164 4-193 124-310 (451)
49 1wp9_A ATP-dependent RNA helic 99.9 1.9E-22 6.4E-27 201.0 15.5 123 72-195 342-476 (494)
50 2z83_A Helicase/nucleoside tri 99.9 2.5E-24 8.6E-29 217.4 1.0 151 18-194 141-313 (459)
51 2eyq_A TRCF, transcription-rep 99.9 4.3E-22 1.5E-26 220.6 18.0 179 9-194 740-922 (1151)
52 3tbk_A RIG-I helicase domain; 99.9 6E-23 2.1E-27 209.6 10.0 128 73-202 371-515 (555)
53 4a4z_A Antiviral helicase SKI2 99.9 7.3E-22 2.5E-26 215.9 19.0 127 75-202 324-502 (997)
54 4a2q_A RIG-I, retinoic acid in 99.9 2.5E-21 8.6E-26 207.8 19.3 123 73-197 613-752 (797)
55 3dmq_A RNA polymerase-associat 99.9 3.1E-21 1.1E-25 210.8 17.0 166 70-236 486-657 (968)
56 3rc3_A ATP-dependent RNA helic 99.9 2.7E-21 9.2E-26 203.1 15.8 191 1-212 251-462 (677)
57 4gl2_A Interferon-induced heli 99.8 1.3E-21 4.6E-26 206.4 10.5 103 88-193 400-517 (699)
58 1gm5_A RECG; helicase, replica 99.8 8.6E-22 3E-26 209.8 8.7 179 18-202 514-705 (780)
59 2v6i_A RNA helicase; membrane, 99.8 1.4E-21 4.8E-26 195.8 9.2 162 4-191 107-288 (431)
60 4a2w_A RIG-I, retinoic acid in 99.8 2.4E-20 8.2E-25 203.3 18.9 123 73-197 613-752 (936)
61 4f92_B U5 small nuclear ribonu 99.8 3.1E-20 1E-24 211.9 19.2 186 14-202 1077-1316(1724)
62 4f92_B U5 small nuclear ribonu 99.8 7.7E-20 2.6E-24 208.6 15.1 184 16-202 240-481 (1724)
63 2oca_A DAR protein, ATP-depend 99.8 3.8E-20 1.3E-24 188.4 11.2 184 8-192 240-453 (510)
64 2fwr_A DNA repair protein RAD2 99.8 4.5E-21 1.5E-25 193.4 2.8 118 71-193 333-453 (472)
65 1z5z_A Helicase of the SNF2/RA 99.8 1E-19 3.6E-24 171.3 10.7 125 70-194 93-224 (271)
66 3h1t_A Type I site-specific re 99.8 1.3E-18 4.4E-23 180.5 14.1 101 82-183 433-545 (590)
67 1z63_A Helicase of the SNF2/RA 99.7 1E-16 3.5E-21 162.6 10.7 123 72-194 324-453 (500)
68 1z3i_X Similar to RAD54-like; 99.6 1.2E-15 4.2E-20 160.0 15.3 134 72-205 398-541 (644)
69 3mwy_W Chromo domain-containin 99.6 5.7E-15 1.9E-19 158.5 14.9 136 72-207 555-699 (800)
70 2w00_A HSDR, R.ECOR124I; ATP-b 99.5 4E-14 1.4E-18 154.7 13.6 120 88-209 537-723 (1038)
71 2g0c_A ATP-dependent RNA helic 99.1 1.8E-11 6E-16 92.5 2.5 72 287-365 1-72 (76)
72 2e29_A ATP-dependent RNA helic 98.8 9.6E-09 3.3E-13 79.9 6.7 83 267-356 2-85 (92)
73 2ipc_A Preprotein translocase 98.7 6.7E-07 2.3E-11 95.0 18.4 205 22-235 380-743 (997)
74 2vl7_A XPD; helicase, unknown 98.2 1.7E-06 6E-11 88.5 7.4 75 87-166 383-463 (540)
75 4a15_A XPD helicase, ATP-depen 97.9 8.4E-05 2.9E-09 77.3 13.5 76 88-166 448-527 (620)
76 1wrb_A DJVLGB; RNA helicase, D 97.8 1.5E-05 5E-10 72.9 4.7 63 1-65 186-252 (253)
77 3crv_A XPD/RAD3 related DNA he 97.4 0.0028 9.6E-08 64.7 15.5 75 87-166 392-473 (551)
78 3hgt_A HDA1 complex subunit 3; 96.9 0.0069 2.3E-07 57.6 12.0 121 71-196 107-239 (328)
79 3i31_A Heat resistant RNA depe 95.5 0.016 5.5E-07 43.2 4.6 56 275-344 2-57 (88)
80 1gm5_A RECG; helicase, replica 94.7 0.057 1.9E-06 57.4 7.9 90 72-161 400-496 (780)
81 3oiy_A Reverse gyrase helicase 93.5 0.1 3.4E-06 50.6 6.4 79 82-160 58-144 (414)
82 2eyq_A TRCF, transcription-rep 90.6 0.58 2E-05 51.9 8.6 89 72-160 635-730 (1151)
83 4ddu_A Reverse gyrase; topoiso 90.4 0.34 1.2E-05 53.4 6.5 90 72-161 104-202 (1104)
84 2v1x_A ATP-dependent DNA helic 86.3 1.3 4.3E-05 45.5 7.2 60 87-146 83-145 (591)
85 3fe2_A Probable ATP-dependent 85.1 2 6.7E-05 38.1 7.1 69 88-160 102-181 (242)
86 1oyw_A RECQ helicase, ATP-depe 85.0 1.8 6.2E-05 43.4 7.6 74 87-160 64-144 (523)
87 1t6n_A Probable ATP-dependent 83.9 2.6 8.9E-05 36.4 7.3 69 89-160 83-163 (220)
88 2gxq_A Heat resistant RNA depe 82.6 2.5 8.6E-05 36.0 6.5 70 87-160 71-149 (207)
89 3ber_A Probable ATP-dependent 81.8 4.6 0.00016 36.0 8.2 69 88-160 111-191 (249)
90 2oxc_A Probable ATP-dependent 81.0 3 0.0001 36.5 6.6 84 72-160 72-171 (230)
91 1vec_A ATP-dependent RNA helic 80.9 4.1 0.00014 34.6 7.2 69 88-160 71-151 (206)
92 3iuy_A Probable ATP-dependent 80.1 2.5 8.6E-05 36.8 5.7 70 87-160 93-172 (228)
93 3bor_A Human initiation factor 78.9 4.6 0.00016 35.5 7.1 71 87-160 97-178 (237)
94 1gku_B Reverse gyrase, TOP-RG; 77.7 3.1 0.00011 45.6 6.6 73 86-160 97-180 (1054)
95 1qde_A EIF4A, translation init 77.2 7.3 0.00025 33.5 7.9 85 71-160 61-160 (224)
96 1wrb_A DJVLGB; RNA helicase, D 77.0 5 0.00017 35.5 6.8 68 89-160 101-179 (253)
97 1xti_A Probable ATP-dependent 75.8 5.9 0.0002 37.1 7.3 70 88-160 76-157 (391)
98 2pl3_A Probable ATP-dependent 75.0 15 0.0005 31.9 9.3 54 87-145 96-154 (236)
99 1wp9_A ATP-dependent RNA helic 72.6 15 0.00051 34.9 9.5 69 87-160 51-130 (494)
100 3ly5_A ATP-dependent RNA helic 70.6 9.4 0.00032 34.2 7.0 70 87-160 125-206 (262)
101 2db3_A ATP-dependent RNA helic 69.8 7.9 0.00027 37.5 6.8 69 88-160 129-208 (434)
102 2i4i_A ATP-dependent RNA helic 69.4 10 0.00035 35.8 7.4 68 89-160 102-180 (417)
103 3dkp_A Probable ATP-dependent 67.6 4.1 0.00014 35.9 3.8 86 72-160 77-180 (245)
104 2z0m_A 337AA long hypothetical 67.5 16 0.00055 33.1 8.1 69 87-160 55-134 (337)
105 2fph_X YLMH; division protein, 65.9 2.9 0.0001 35.4 2.3 73 285-361 84-157 (165)
106 1fuu_A Yeast initiation factor 65.3 13 0.00044 34.7 7.0 69 87-160 88-167 (394)
107 3gk5_A Uncharacterized rhodane 64.1 5.1 0.00017 30.8 3.3 43 80-122 47-90 (108)
108 1hv8_A Putative ATP-dependent 61.1 60 0.0021 29.4 10.9 84 72-160 55-152 (367)
109 1q0u_A Bstdead; DEAD protein, 60.7 5.4 0.00018 34.4 3.2 69 88-160 72-155 (219)
110 1gmx_A GLPE protein; transfera 59.6 11 0.00036 28.7 4.4 45 79-123 49-95 (108)
111 3g5j_A Putative ATP/GTP bindin 59.1 8.7 0.0003 30.1 3.9 39 85-123 85-126 (134)
112 1s2m_A Putative ATP-dependent 58.5 33 0.0011 32.0 8.7 69 88-160 89-168 (400)
113 4a2p_A RIG-I, retinoic acid in 58.1 11 0.00038 37.0 5.4 69 88-160 55-135 (556)
114 1tf5_A Preprotein translocase 58.0 17 0.00057 38.7 6.8 57 82-145 119-180 (844)
115 3flh_A Uncharacterized protein 57.4 8.5 0.00029 30.2 3.6 43 80-122 63-108 (124)
116 3tbk_A RIG-I helicase domain; 56.6 9.6 0.00033 37.4 4.6 69 88-160 52-132 (555)
117 2j0s_A ATP-dependent RNA helic 54.9 24 0.00083 33.1 7.0 85 72-160 85-184 (410)
118 2fsf_A Preprotein translocase 54.5 21 0.00072 38.0 6.9 53 87-145 114-171 (853)
119 1tq1_A AT5G66040, senescence-a 54.5 7.9 0.00027 30.7 2.9 43 80-122 74-118 (129)
120 4a2q_A RIG-I, retinoic acid in 53.8 16 0.00056 38.3 6.1 69 88-160 296-376 (797)
121 3eiq_A Eukaryotic initiation f 53.5 36 0.0012 31.8 8.0 86 72-160 88-188 (414)
122 3iwh_A Rhodanese-like domain p 53.4 6.6 0.00023 30.1 2.2 37 85-121 53-90 (103)
123 3l9o_A ATP-dependent RNA helic 53.3 16 0.00056 40.1 6.1 68 82-160 221-295 (1108)
124 1nkt_A Preprotein translocase 52.9 23 0.00079 37.9 6.9 58 81-145 146-208 (922)
125 3fmo_B ATP-dependent RNA helic 52.4 9.1 0.00031 35.2 3.4 82 72-160 142-240 (300)
126 3eme_A Rhodanese-like domain p 51.3 9.7 0.00033 28.7 2.9 37 86-122 54-91 (103)
127 2jtq_A Phage shock protein E; 50.2 27 0.00091 25.0 5.1 43 79-122 30-76 (85)
128 2zj8_A DNA helicase, putative 48.6 22 0.00075 36.8 5.9 82 72-160 50-143 (720)
129 3hix_A ALR3790 protein; rhodan 48.5 11 0.00038 28.6 2.8 40 83-122 47-88 (106)
130 3dmn_A Putative DNA helicase; 48.5 1.1E+02 0.0039 25.1 9.8 114 31-164 8-123 (174)
131 2ipc_A Preprotein translocase 47.7 27 0.00092 37.6 6.3 58 82-146 115-177 (997)
132 3b6e_A Interferon-induced heli 47.4 8.3 0.00028 32.7 2.1 55 88-146 82-141 (216)
133 1wv9_A Rhodanese homolog TT165 47.2 14 0.00046 27.3 3.1 36 86-122 52-88 (94)
134 3foj_A Uncharacterized protein 46.7 11 0.00037 28.2 2.5 37 86-122 54-91 (100)
135 2p6r_A Afuhel308 helicase; pro 46.6 19 0.00066 37.1 5.2 82 72-160 51-143 (702)
136 2fsx_A RV0390, COG0607: rhodan 44.2 33 0.0011 27.5 5.3 37 86-122 78-116 (148)
137 1qxn_A SUD, sulfide dehydrogen 41.8 25 0.00084 28.1 4.0 38 85-122 79-118 (137)
138 4gl2_A Interferon-induced heli 40.6 7.5 0.00026 39.9 0.8 68 89-160 57-141 (699)
139 2oca_A DAR protein, ATP-depend 39.6 27 0.00093 34.1 4.7 82 72-160 139-230 (510)
140 1vee_A Proline-rich protein fa 39.5 41 0.0014 26.5 5.1 36 87-122 73-110 (134)
141 4a2w_A RIG-I, retinoic acid in 38.4 22 0.00075 38.3 4.1 69 88-160 296-376 (936)
142 2k0z_A Uncharacterized protein 36.6 41 0.0014 25.5 4.5 37 86-122 54-91 (110)
143 3nhv_A BH2092 protein; alpha-b 35.9 23 0.00078 28.6 2.9 37 86-122 70-109 (144)
144 4a4z_A Antiviral helicase SKI2 34.7 57 0.002 35.3 6.7 64 86-160 80-152 (997)
145 2va8_A SSO2462, SKI2-type heli 34.3 30 0.001 35.7 4.3 82 72-160 57-150 (715)
146 2hhg_A Hypothetical protein RP 33.9 22 0.00076 28.1 2.5 37 86-122 84-122 (139)
147 2fz4_A DNA repair protein RAD2 33.6 96 0.0033 26.9 7.0 60 71-145 118-179 (237)
148 2xgj_A ATP-dependent RNA helic 33.1 54 0.0019 35.6 6.1 78 72-160 112-197 (1010)
149 2ykg_A Probable ATP-dependent 32.1 35 0.0012 34.8 4.3 68 89-160 62-141 (696)
150 3d1p_A Putative thiosulfate su 31.0 26 0.00087 27.8 2.4 36 87-122 90-127 (139)
151 1c4o_A DNA nucleotide excision 29.9 1.9E+02 0.0064 29.6 9.4 82 68-151 35-144 (664)
152 2fwr_A DNA repair protein RAD2 28.8 85 0.0029 30.1 6.3 74 72-160 119-197 (472)
153 3i5x_A ATP-dependent RNA helic 27.7 19 0.00065 35.8 1.3 69 89-160 147-231 (563)
154 1urh_A 3-mercaptopyruvate sulf 27.5 88 0.003 27.8 5.7 38 86-123 228-267 (280)
155 3sqw_A ATP-dependent RNA helic 27.5 19 0.00066 36.1 1.3 69 89-160 96-180 (579)
156 3hjh_A Transcription-repair-co 26.8 3E+02 0.01 27.0 9.8 111 63-175 16-145 (483)
157 3fmp_B ATP-dependent RNA helic 26.1 1.7E+02 0.0057 28.0 7.9 83 71-160 141-240 (479)
158 3o8b_A HCV NS3 protease/helica 25.8 92 0.0031 32.1 6.0 66 87-163 256-326 (666)
159 3fht_A ATP-dependent RNA helic 24.7 1.6E+02 0.0053 27.2 7.2 82 72-160 75-173 (412)
160 3pey_A ATP-dependent RNA helic 24.5 80 0.0027 28.9 5.0 66 87-160 74-150 (395)
161 3ilm_A ALR3790 protein; rhodan 23.9 33 0.0011 27.5 1.9 38 85-122 53-92 (141)
162 3mwy_W Chromo domain-containin 22.7 2.3E+02 0.0078 29.6 8.6 59 86-145 284-353 (800)
163 1t3k_A Arath CDC25, dual-speci 21.8 1E+02 0.0035 24.8 4.6 45 79-123 76-131 (152)
164 2l82_A Designed protein OR32; 21.7 1.5E+02 0.0051 23.0 5.1 49 92-140 6-55 (162)
165 1rif_A DAR protein, DNA helica 21.6 1.2E+02 0.0043 26.7 5.5 82 72-160 139-230 (282)
166 1urh_A 3-mercaptopyruvate sulf 21.2 98 0.0034 27.5 4.7 47 77-123 73-124 (280)
167 1uar_A Rhodanese; sulfurtransf 20.6 66 0.0023 28.7 3.4 46 77-122 220-270 (285)
168 2ki2_A SS-DNA binding protein 20.5 47 0.0016 23.7 2.0 69 286-365 1-75 (90)
169 1e0c_A Rhodanese, sulfurtransf 20.0 68 0.0023 28.4 3.4 37 86-122 221-259 (271)
No 1
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=100.00 E-value=4.9e-45 Score=349.32 Aligned_cols=269 Identities=39% Similarity=0.602 Sum_probs=245.9
Q ss_pred ceEEEEEEcCCccHHHHHHHHHHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCcee
Q 016983 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFT 139 (379)
Q Consensus 61 ~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~ 139 (379)
.+.|+++.++..+|.++|.+++.... ++++||||+|++.++.++..|.. ++.+..+||+|++.+|+.+++.|++|..+
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~~~-~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~ 80 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYVAS-PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR 80 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHC-CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCC
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhcC-CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCce
Confidence 35788999999999999999998875 78999999999999999999975 89999999999999999999999999999
Q ss_pred EEEeccccccCCCCCccceEEecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHhCCCceeeCCCCHH
Q 016983 140 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE 219 (379)
Q Consensus 140 iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p~~~ 219 (379)
||||||++++|+|+|++++|||||+|.+.++|+||+|||||.|+.|.|++|+++.+...++.+++..+.+++...+|+.+
T Consensus 81 vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~~~~~ 160 (300)
T 3i32_A 81 VLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPE 160 (300)
T ss_dssp EEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCCCCHH
T ss_pred EEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcccCccchhchHHHHHHHHhhhCHHHHHHHHHHHcCCCCCCCCCccccCCCCeEEEEEeeCCcccC
Q 016983 220 DVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSR 299 (379)
Q Consensus 220 ~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~a~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~ 299 (379)
++.+.....+...+..+..+....|.+.++++++++.++.+++||+.+.+... +++++.++.++|++++++.|+ .
T Consensus 161 ei~~~~~~~~~~~l~~~~~~~~~~f~~~~~~l~~~~~~e~laaal~~l~~~~~--~~~~l~~~~~~~~~~~~~~g~---~ 235 (300)
T 3i32_A 161 EVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALLLGGAP--AERSLLTGEEGWRTYKATGPR---L 235 (300)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHTCHHHHHHHHHHHHTCCC--CCBCTTTCCBSCBCEEEECTT---C
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCcHHHHHHHHHHHhcCCc--CccccccCCCCcEEEEEecCC---C
Confidence 99999999999999988878889999999999999999999999999998776 567888888999999999999 5
Q ss_pred CCCChhHHHHHHhhhCCCCCCccccEEeeeCCceeeeecchhhHHHH
Q 016983 300 GFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVCIDTVILLYFYAS 346 (379)
Q Consensus 300 ~~~~~~~i~~~~~~~~~~~~~~ig~i~i~~~~~~~~~~~~~~~~~~~ 346 (379)
++ |++++ +|++. |+ +||+|++.++++ +||||...++
T Consensus 236 ~~--~~~~~-~i~~~-~~---~ig~i~~~~~~~----~~dvp~~~~~ 271 (300)
T 3i32_A 236 SL--PRLVA-LLKGQ-GL---EVGKVAEAEGGF----YVDLRPEARP 271 (300)
T ss_dssp CH--HHHHH-HHHHT-TC---CCCCEEEETTEE----EECBCSSCCC
T ss_pred CC--cHHHH-HHHhc-CC---eECcEEEeCCEE----EEEeCHHHcC
Confidence 55 99997 77764 65 999999988887 9999987776
No 2
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=100.00 E-value=2e-36 Score=275.70 Aligned_cols=206 Identities=44% Similarity=0.704 Sum_probs=192.5
Q ss_pred eEEEEEEcCCccHHHHHHHHHHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeE
Q 016983 62 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTV 140 (379)
Q Consensus 62 i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~i 140 (379)
+.+.++.++...|.+.|.+++... +++++||||+++..++.++..|.. ++.+..+||+|++.+|+.+++.|++|..+|
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~v 84 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRV 84 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHHH-CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCE
T ss_pred eeeeEEeCCHHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeE
Confidence 456677788889999999999876 478999999999999999999975 899999999999999999999999999999
Q ss_pred EEeccccccCCCCCccceEEecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHhCCCceeeCCCCHHH
Q 016983 141 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVED 220 (379)
Q Consensus 141 LVaTdv~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p~~~~ 220 (379)
||||+++++|+|+|++++|||||+|.++.+|+||+|||||.|+.|.|++|+++.+...++.+++..+.+++...+|..++
T Consensus 85 lvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~e 164 (212)
T 3eaq_A 85 LVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEE 164 (212)
T ss_dssp EEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCCCCHHH
T ss_pred EEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcccCccchhchHHHHHHHHhhhCHHHHHHHHHHHc
Q 016983 221 VLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS 268 (379)
Q Consensus 221 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~a~al~~~~ 268 (379)
+.+.....+...+..........|.+.+++++++++++++++||+++.
T Consensus 165 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~ll 212 (212)
T 3eaq_A 165 VLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALLL 212 (212)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHTTTHHHHHHHHHHTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCHHHHHHHHHhhC
Confidence 999999999999999877666899999999999999999999999873
No 3
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=2.2e-35 Score=296.20 Aligned_cols=203 Identities=34% Similarity=0.586 Sum_probs=180.3
Q ss_pred CCCCChHHHHHHHHHhC--CCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHH
Q 016983 1 MLAVGFEEDVELILENL--PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL 78 (379)
Q Consensus 1 mL~~GF~~di~~Il~~~--p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L 78 (379)
|+++||.+++..|+..+ ++++|+++||||+|+++.+++..++.+|..+.+.. ......++.+.+..+....|...|
T Consensus 215 ~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~--~~~~~~~i~~~~~~~~~~~k~~~l 292 (434)
T 2db3_A 215 MLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGI--VGGACSDVKQTIYEVNKYAKRSKL 292 (434)
T ss_dssp HTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESS--TTCCCTTEEEEEEECCGGGHHHHH
T ss_pred hhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEecc--ccccccccceEEEEeCcHHHHHHH
Confidence 68999999999999985 67899999999999999999999999998886542 233456788888888888899888
Q ss_pred HHHHHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccc
Q 016983 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (379)
Q Consensus 79 ~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~ 157 (379)
.+++.... .++||||+|++.|+.++..|.. ++.+..+||+|++.+|+.++++|++|+.+||||||++++|+|+|+++
T Consensus 293 ~~~l~~~~--~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~ 370 (434)
T 2db3_A 293 IEILSEQA--DGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIK 370 (434)
T ss_dssp HHHHHHCC--TTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCC
T ss_pred HHHHHhCC--CCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCC
Confidence 88887653 4599999999999999999985 89999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCChhHHHHHHhhccCCCCCceEEEEeChh-hHHHHHHHHHHhC
Q 016983 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS-QRRTVRSLERDVG 207 (379)
Q Consensus 158 ~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~-e~~~l~~le~~~~ 207 (379)
+|||||+|.+.++|+||+|||||+|+.|.|++|+++. +...++.+.+.+.
T Consensus 371 ~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~ 421 (434)
T 2db3_A 371 HVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILE 421 (434)
T ss_dssp EEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999954 5556666655543
No 4
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.1e-33 Score=293.47 Aligned_cols=214 Identities=27% Similarity=0.418 Sum_probs=180.1
Q ss_pred CCCCChHHHHHHHHHhCC-------CCCcEEEEeeeCChHHHHHHHHhcCCCceEEeec--ccccccccceEEEEEEcCC
Q 016983 1 MLAVGFEEDVELILENLP-------PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVG--NQDEKLAEGIKLYAISTTA 71 (379)
Q Consensus 1 mL~~GF~~di~~Il~~~p-------~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~--~~~~~~~~~i~~~~~~~~~ 71 (379)
|+++||.++++.|+..++ .+.|+++||||+|+.+..++..++.+|..+.+.. .........+.+.+.....
T Consensus 187 l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 266 (579)
T 3sqw_A 187 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 266 (579)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred hhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecc
Confidence 579999999999998764 3779999999999999999999999887665432 2223334556666555543
Q ss_pred c-c-HHHHHHHHHH---HHcCCCcEEEEecccccHHHHHHHHhc----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEE
Q 016983 72 T-S-KRTILSDLIT---VYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLV 142 (379)
Q Consensus 72 ~-~-k~~~L~~ll~---~~~~~~~~IIF~~t~~~~~~l~~~L~~----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLV 142 (379)
. . +...+..+.. ...++.++||||+|+..|+.++..|.. ++.+..+||+|++.+|..++++|++|+.+|||
T Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLV 346 (579)
T 3sqw_A 267 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 346 (579)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEE
Confidence 2 2 2333333333 224567999999999999999999974 78999999999999999999999999999999
Q ss_pred eccccccCCCCCccceEEecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHhCCCceeeC
Q 016983 143 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (379)
Q Consensus 143 aTdv~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~ 214 (379)
||+++++|+|+|++++||+|++|.+++.|+||+|||||+|+.|.|++++++.|...++.+++..+..++...
T Consensus 347 aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~~ 418 (579)
T 3sqw_A 347 CTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQE 418 (579)
T ss_dssp ECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCEEE
T ss_pred EcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCCCccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999988887643
No 5
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.2e-33 Score=279.56 Aligned_cols=213 Identities=35% Similarity=0.601 Sum_probs=192.0
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCcc-HHHHHH
Q 016983 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATS-KRTILS 79 (379)
Q Consensus 1 mL~~GF~~di~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~-k~~~L~ 79 (379)
|+++||.+.+..++..++++.|++++|||+|.++.+++..++.+|..+.+.. ......++.+++..+.... |...+.
T Consensus 191 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~k~~~l~ 268 (410)
T 2j0s_A 191 MLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKR--DELTLEGIKQFFVAVEREEWKFDTLC 268 (410)
T ss_dssp HTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCG--GGCSCTTEEEEEEEESSTTHHHHHHH
T ss_pred HHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecC--ccccCCCceEEEEEeCcHHhHHHHHH
Confidence 5789999999999999999999999999999999999999999998775432 2334566777777665544 888888
Q ss_pred HHHHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccce
Q 016983 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (379)
Q Consensus 80 ~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~ 158 (379)
.++.... .+++||||++++.++.++..|.. ++.+..+||+|++.+|+.+++.|++|+.+|||||+++++|+|+|++++
T Consensus 269 ~~~~~~~-~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~ 347 (410)
T 2j0s_A 269 DLYDTLT-ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSL 347 (410)
T ss_dssp HHHHHHT-SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEE
T ss_pred HHHHhcC-CCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCE
Confidence 8887763 67999999999999999999975 889999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHhCCCceeeCCC
Q 016983 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (379)
Q Consensus 159 VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p 216 (379)
||+||+|.+...|+||+||+||.|+.|.|++|+++.+...++.++++++..+++.+.+
T Consensus 348 Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 405 (410)
T 2j0s_A 348 IINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMN 405 (410)
T ss_dssp EEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCSC
T ss_pred EEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceecccc
Confidence 9999999999999999999999999999999999999999999999999999887654
No 6
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=4.8e-33 Score=287.13 Aligned_cols=214 Identities=27% Similarity=0.421 Sum_probs=179.1
Q ss_pred CCCCChHHHHHHHHHhCC-------CCCcEEEEeeeCChHHHHHHHHhcCCCceEEeec--ccccccccceEEEEEEcCC
Q 016983 1 MLAVGFEEDVELILENLP-------PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVG--NQDEKLAEGIKLYAISTTA 71 (379)
Q Consensus 1 mL~~GF~~di~~Il~~~p-------~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~--~~~~~~~~~i~~~~~~~~~ 71 (379)
|+++||.++++.|+..++ ++.|+++||||+|+.+.+++..++.+|..+.+.. .........+.+.+.....
T Consensus 238 l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (563)
T 3i5x_A 238 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 317 (563)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred HhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECch
Confidence 578999999999998763 3779999999999999999999999887665432 2222334556665555443
Q ss_pred c-cH-HHHHHHHHH---HHcCCCcEEEEecccccHHHHHHHHhc----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEE
Q 016983 72 T-SK-RTILSDLIT---VYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLV 142 (379)
Q Consensus 72 ~-~k-~~~L~~ll~---~~~~~~~~IIF~~t~~~~~~l~~~L~~----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLV 142 (379)
. .+ ...+..+.. ....+.++||||+|+..|+.++..|.. ++.+..+||+|++.+|..+++.|++|+.+|||
T Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLv 397 (563)
T 3i5x_A 318 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 397 (563)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 2 22 223333332 224578999999999999999999974 78999999999999999999999999999999
Q ss_pred eccccccCCCCCccceEEecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHhCCCceeeC
Q 016983 143 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (379)
Q Consensus 143 aTdv~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~ 214 (379)
||+++++|+|+|++++||+|++|.++.+|+||+|||||+|+.|.|++++++.|...++.+++..+..++...
T Consensus 398 aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~~ 469 (563)
T 3i5x_A 398 CTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQE 469 (563)
T ss_dssp ECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCEEE
T ss_pred EcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCCCccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999988887643
No 7
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.1e-32 Score=272.78 Aligned_cols=205 Identities=40% Similarity=0.605 Sum_probs=180.4
Q ss_pred CCCCChHHHHHHHHHh--CCC--CCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHH
Q 016983 1 MLAVGFEEDVELILEN--LPP--KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT 76 (379)
Q Consensus 1 mL~~GF~~di~~Il~~--~p~--~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~ 76 (379)
|+++||..++..++.. ++. ..|++++|||+|+.+..++..++.+|..+.+.. ......++.+.+..++...|..
T Consensus 187 ~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~ 264 (417)
T 2i4i_A 187 MLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR--VGSTSENITQKVVWVEESDKRS 264 (417)
T ss_dssp HHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC------CCSSEEEEEEECCGGGHHH
T ss_pred hhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCC--CCCCccCceEEEEEeccHhHHH
Confidence 3568999999999985 443 689999999999999999999999988776532 2334567788888888888999
Q ss_pred HHHHHHHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCc
Q 016983 77 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN 155 (379)
Q Consensus 77 ~L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~ 155 (379)
.+.+++.....++++||||++++.++.++..|.. ++.+..+||+|++++|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 265 ~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~ 344 (417)
T 2i4i_A 265 FLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISN 344 (417)
T ss_dssp HHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCC
T ss_pred HHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCccc
Confidence 9999988776678999999999999999999975 899999999999999999999999999999999999999999999
Q ss_pred cceEEecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHhC
Q 016983 156 VDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 207 (379)
Q Consensus 156 v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~~ 207 (379)
+++||+|++|.+..+|+||+||+||.|+.|.|++|+++.+...++.+.+.+.
T Consensus 345 v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~ 396 (417)
T 2i4i_A 345 VKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLV 396 (417)
T ss_dssp EEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHH
T ss_pred CCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999888888877664
No 8
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=7.3e-32 Score=265.99 Aligned_cols=215 Identities=31% Similarity=0.482 Sum_probs=185.1
Q ss_pred CChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCC-ccHHHHHHHHH
Q 016983 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA-TSKRTILSDLI 82 (379)
Q Consensus 4 ~GF~~di~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~L~~ll 82 (379)
.||...+..++..++.+.|++++|||+|..+..++..++.+|..+.+.. .......+.+++..+.. ..+...+..++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 261 (412)
T 3fht_A 184 QGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR--EEETLDTIKQYYVLCSSRDEKFQALCNLY 261 (412)
T ss_dssp TTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCG--GGSSCTTEEEEEEECSSHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeecc--ccccccCceEEEEEcCChHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999998876543 23345666777666654 46777788877
Q ss_pred HHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEEe
Q 016983 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (379)
Q Consensus 83 ~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~ 161 (379)
... .++++||||++++.++.++..|.. ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 262 ~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~ 340 (412)
T 3fht_A 262 GAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN 340 (412)
T ss_dssp HHH-SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEE
T ss_pred hhc-CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEE
Confidence 766 468999999999999999999985 889999999999999999999999999999999999999999999999999
Q ss_pred cCCC------CChhHHHHHHhhccCCCCCceEEEEeChhh-HHHHHHHHHHhCCCceeeCCCCHHHH
Q 016983 162 YELP------NDPETFVHRSGRTGRAGKEGTAILMFTSSQ-RRTVRSLERDVGCKFEFVSPPVVEDV 221 (379)
Q Consensus 162 ~~~P------~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e-~~~l~~le~~~~~~~~~~~~p~~~~i 221 (379)
||+| .+..+|+||+||+||.|+.|.|++++++.+ ...++.+++.++..++....+..+++
T Consensus 341 ~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 407 (412)
T 3fht_A 341 FDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEI 407 (412)
T ss_dssp SSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC--------
T ss_pred ECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCCccHHHH
Confidence 9999 467899999999999999999999998664 88999999999999998877665544
No 9
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=6.4e-32 Score=266.13 Aligned_cols=211 Identities=31% Similarity=0.530 Sum_probs=191.5
Q ss_pred CCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHHHH
Q 016983 2 LAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDL 81 (379)
Q Consensus 2 L~~GF~~di~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~l 81 (379)
++.+|...+..++..+++..|++++|||+|..+.++...++.+|..+.+.. .....++.+++.......|...+..+
T Consensus 176 ~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~k~~~l~~~ 252 (400)
T 1s2m_A 176 LSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLME---ELTLKGITQYYAFVEERQKLHCLNTL 252 (400)
T ss_dssp SSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCS---SCBCTTEEEEEEECCGGGHHHHHHHH
T ss_pred hhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEecc---ccccCCceeEEEEechhhHHHHHHHH
Confidence 456789999999999999999999999999999999999999988775542 23456677888888878888888888
Q ss_pred HHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEE
Q 016983 82 ITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII 160 (379)
Q Consensus 82 l~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI 160 (379)
+... ..+++||||++++.++.++..|.. ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 253 ~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi 331 (400)
T 1s2m_A 253 FSKL-QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVI 331 (400)
T ss_dssp HHHS-CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEE
T ss_pred Hhhc-CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEE
Confidence 8775 468999999999999999999985 89999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHhCCCceeeCCC
Q 016983 161 HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (379)
Q Consensus 161 ~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p 216 (379)
+|++|.+..+|+||+||+||.|+.|.|++++++.|...++.+++.++.+++..+..
T Consensus 332 ~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 387 (400)
T 1s2m_A 332 NFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPAT 387 (400)
T ss_dssp ESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSS
T ss_pred EeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCccccccc
Confidence 99999999999999999999999999999999999999999999999999876543
No 10
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.5e-32 Score=271.43 Aligned_cols=212 Identities=33% Similarity=0.574 Sum_probs=174.3
Q ss_pred CCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCC-ccHHHHHHH
Q 016983 2 LAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA-TSKRTILSD 80 (379)
Q Consensus 2 L~~GF~~di~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~L~~ 80 (379)
++.||...+..++..++++.|++++|||+|..+..+...++.+|..+.+.. .......+.+++..... ..+...+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~ 273 (414)
T 3eiq_A 196 LSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKK--EELTLEGIRQFYINVEREEWKLDTLCD 273 (414)
T ss_dssp HHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCC--CCCCTTSCCEEEEECSSSTTHHHHHHH
T ss_pred hccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecC--CccCCCCceEEEEEeChHHhHHHHHHH
Confidence 567899999999999999999999999999999999999999998775532 23334556666666554 448888888
Q ss_pred HHHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceE
Q 016983 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (379)
Q Consensus 81 ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~V 159 (379)
++... ..+++||||++++.++.++..|.. ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++|
T Consensus 274 ~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~V 352 (414)
T 3eiq_A 274 LYETL-TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLV 352 (414)
T ss_dssp HHHSS-CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCE
T ss_pred HHHhC-CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEE
Confidence 88765 467999999999999999999986 8999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHhCCCceeeCCC
Q 016983 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (379)
Q Consensus 160 I~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p 216 (379)
|+|++|.+..+|+||+||+||.|+.|.|++++++.+...++.+++.++..++..+..
T Consensus 353 i~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (414)
T 3eiq_A 353 INYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLN 409 (414)
T ss_dssp EESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC-
T ss_pred EEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChh
Confidence 999999999999999999999999999999999999999999999999998886543
No 11
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.98 E-value=3.2e-31 Score=259.82 Aligned_cols=210 Identities=24% Similarity=0.465 Sum_probs=188.7
Q ss_pred CChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHHHHHH
Q 016983 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 83 (379)
Q Consensus 4 ~GF~~di~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~ 83 (379)
++|...+..++...+...|++++|||+|+.+..++..++.+|..+.+.. ........+.+++...+...|...+..++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 246 (391)
T 1xti_A 168 LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDD-ETKLTLHGLQQYYVKLKDNEKNRKLFDLLD 246 (391)
T ss_dssp HHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCC-CCCCCCTTCEEEEEECCGGGHHHHHHHHHH
T ss_pred cchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecC-ccccCcccceEEEEEcCchhHHHHHHHHHH
Confidence 5889999999999999999999999999999999999999998876543 222334567788888888889998988888
Q ss_pred HHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEEec
Q 016983 84 VYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 162 (379)
Q Consensus 84 ~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~ 162 (379)
.. .++++||||++++.++.++..|.. ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+|
T Consensus 247 ~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~ 325 (391)
T 1xti_A 247 VL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNY 325 (391)
T ss_dssp HS-CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEES
T ss_pred hc-CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEe
Confidence 76 578999999999999999999985 8899999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHhhccCCCCCceEEEEeChh-hHHHHHHHHHHhCCCceeeCC
Q 016983 163 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSS-QRRTVRSLERDVGCKFEFVSP 215 (379)
Q Consensus 163 ~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~-e~~~l~~le~~~~~~~~~~~~ 215 (379)
++|.+..+|+||+||+||.|+.|.|++++++. +...++.+++.++..++..+.
T Consensus 326 ~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (391)
T 1xti_A 326 DMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPD 379 (391)
T ss_dssp SCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCS
T ss_pred CCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCc
Confidence 99999999999999999999999999999876 567889999999988887554
No 12
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.97 E-value=3.2e-31 Score=231.23 Aligned_cols=155 Identities=34% Similarity=0.613 Sum_probs=146.9
Q ss_pred cccceEEEEEEcCCccHHHHHHHHHHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCC
Q 016983 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG 136 (379)
Q Consensus 58 ~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g 136 (379)
...++.|+++.++..+|...|..++... .++++||||+++..++.++..|.. ++.+..+||+|++.+|..++++|++|
T Consensus 6 ~~~~i~~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g 84 (163)
T 2hjv_A 6 TTRNIEHAVIQVREENKFSLLKDVLMTE-NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRG 84 (163)
T ss_dssp CCCCEEEEEEECCGGGHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CcccceEEEEECChHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 4567899999999999999999999876 468999999999999999999985 89999999999999999999999999
Q ss_pred ceeEEEeccccccCCCCCccceEEecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHhCCCceee
Q 016983 137 KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFV 213 (379)
Q Consensus 137 ~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~ 213 (379)
+.+|||||+++++|+|+|++++||+||+|.++.+|+||+||+||.|+.|.+++|+++.+...++.+++.++.++++.
T Consensus 85 ~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 161 (163)
T 2hjv_A 85 EYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQKI 161 (163)
T ss_dssp SCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCCEEC
T ss_pred CCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888764
No 13
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.97 E-value=9.5e-31 Score=256.03 Aligned_cols=216 Identities=31% Similarity=0.538 Sum_probs=187.3
Q ss_pred CChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCC-ccHHHHHHHHH
Q 016983 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA-TSKRTILSDLI 82 (379)
Q Consensus 4 ~GF~~di~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~L~~ll 82 (379)
.||...+..+...++.+.|++++|||+|+.+..++..++.++..+.... .......+.+.+..... ..+...+..++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 238 (395)
T 3pey_A 161 QGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQT--NEVNVDAIKQLYMDCKNEADKFDVLTELY 238 (395)
T ss_dssp TTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCG--GGCSCTTEEEEEEECSSHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccc--cccccccccEEEEEcCchHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999888776543 22334556666665543 45677777776
Q ss_pred HHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEEe
Q 016983 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (379)
Q Consensus 83 ~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~ 161 (379)
... .++++||||++++.++.++..|.. ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 239 ~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~ 317 (395)
T 3pey_A 239 GLM-TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVN 317 (395)
T ss_dssp TTT-TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEE
T ss_pred Hhc-cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEE
Confidence 654 468999999999999999999985 789999999999999999999999999999999999999999999999999
Q ss_pred cCCCC------ChhHHHHHHhhccCCCCCceEEEEeCh-hhHHHHHHHHHHhC-CCceeeCCCCHHHHH
Q 016983 162 YELPN------DPETFVHRSGRTGRAGKEGTAILMFTS-SQRRTVRSLERDVG-CKFEFVSPPVVEDVL 222 (379)
Q Consensus 162 ~~~P~------~~~~yiqR~GRtgR~G~~g~~i~l~~~-~e~~~l~~le~~~~-~~~~~~~~p~~~~i~ 222 (379)
||+|. ++.+|+||+||+||.|+.|.|++++++ ++...++.+++..+ ..+...+.+..+++.
T Consensus 318 ~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 386 (395)
T 3pey_A 318 YDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPTDDWDEVE 386 (395)
T ss_dssp SSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECCSSCHHHHH
T ss_pred cCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhCCceeecCChHHHHHHH
Confidence 99998 999999999999999999999999985 56778899999998 778877777665544
No 14
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.97 E-value=2.3e-31 Score=234.71 Aligned_cols=161 Identities=28% Similarity=0.502 Sum_probs=145.7
Q ss_pred cccceEEEEEEcCCcc-HHHHHHHHHHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccC
Q 016983 58 LAEGIKLYAISTTATS-KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQ 135 (379)
Q Consensus 58 ~~~~i~~~~~~~~~~~-k~~~L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~ 135 (379)
++.++.|+++.++..+ |...|..++... +++++||||+++..++.++..|.. ++.+..+||+|++.+|..+++.|++
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~ 82 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSI-TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRD 82 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTS-CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 4578899999888755 999999888765 468999999999999999999985 8999999999999999999999999
Q ss_pred CceeEEEeccccccCCCCCccceEEecCCC------CChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHhCCC
Q 016983 136 GKFTVLVATDVAARGLDIPNVDLIIHYELP------NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 209 (379)
Q Consensus 136 g~~~iLVaTdv~~rGiDip~v~~VI~~~~P------~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~~~~ 209 (379)
|+.+|||||+++++|+|+|++++||+||+| .+..+|+||+||+||.|+.|.+++|+++.+...++.+++.++.+
T Consensus 83 g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 162 (175)
T 2rb4_A 83 GKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSS 162 (175)
T ss_dssp TSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCC
T ss_pred CCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred ceeeCCCCHH
Q 016983 210 FEFVSPPVVE 219 (379)
Q Consensus 210 ~~~~~~p~~~ 219 (379)
+++.+++..+
T Consensus 163 ~~~~~~~~~~ 172 (175)
T 2rb4_A 163 IKQLNAEDMD 172 (175)
T ss_dssp CEEECSSCCC
T ss_pred ccccCCchhc
Confidence 9988777644
No 15
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=5.6e-31 Score=255.17 Aligned_cols=205 Identities=36% Similarity=0.599 Sum_probs=185.6
Q ss_pred CCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHHHH
Q 016983 2 LAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDL 81 (379)
Q Consensus 2 L~~GF~~di~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~l 81 (379)
++.||...+..++..+++..|++++|||+|.++.++...++.++..+... ...++.+.+.......+.+.+..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~ 233 (367)
T 1hv8_A 160 LNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAK------INANIEQSYVEVNENERFEALCRL 233 (367)
T ss_dssp HTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECC------SSSSSEEEEEECCGGGHHHHHHHH
T ss_pred hhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEec------CCCCceEEEEEeChHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999887766432 124566777777778888888777
Q ss_pred HHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEE
Q 016983 82 ITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII 160 (379)
Q Consensus 82 l~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI 160 (379)
+. ..+.++||||++++.++.++..|.. ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 234 l~--~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi 311 (367)
T 1hv8_A 234 LK--NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVI 311 (367)
T ss_dssp HC--STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEE
T ss_pred Hh--cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEE
Confidence 76 3567999999999999999999985 88999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHhCCCceeeC
Q 016983 161 HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (379)
Q Consensus 161 ~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~ 214 (379)
++++|.++.+|+||+||+||.|+.|.+++++++.|...++.+++..+.+++...
T Consensus 312 ~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 365 (367)
T 1hv8_A 312 NYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKLK 365 (367)
T ss_dssp ESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCBC
T ss_pred EecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCceec
Confidence 999999999999999999999999999999999999999999999999887653
No 16
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.97 E-value=6.9e-33 Score=280.67 Aligned_cols=214 Identities=31% Similarity=0.475 Sum_probs=44.8
Q ss_pred CChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCC-ccHHHHHHHHH
Q 016983 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA-TSKRTILSDLI 82 (379)
Q Consensus 4 ~GF~~di~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~L~~ll 82 (379)
.||...+..|+..++.+.|+++||||+|.++..++..++.+|..+.+... ......+.++++.++. ..+...+..++
T Consensus 251 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 328 (479)
T 3fmp_B 251 QGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE--EETLDTIKQYYVLCSSRDEKFQALCNLY 328 (479)
T ss_dssp TTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC--------------------------------
T ss_pred CCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEecccc--ccCcCCceEEEEEeCCHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999988876532 2334556666665543 45777777776
Q ss_pred HHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEEe
Q 016983 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (379)
Q Consensus 83 ~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~ 161 (379)
... ...++||||+++..++.++..|.. ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++|||
T Consensus 329 ~~~-~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~ 407 (479)
T 3fmp_B 329 GAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN 407 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhc-cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEE
Confidence 654 467999999999999999999985 789999999999999999999999999999999999999999999999999
Q ss_pred cCCCC------ChhHHHHHHhhccCCCCCceEEEEeChhh-HHHHHHHHHHhCCCceeeCCCCHHH
Q 016983 162 YELPN------DPETFVHRSGRTGRAGKEGTAILMFTSSQ-RRTVRSLERDVGCKFEFVSPPVVED 220 (379)
Q Consensus 162 ~~~P~------~~~~yiqR~GRtgR~G~~g~~i~l~~~~e-~~~l~~le~~~~~~~~~~~~p~~~~ 220 (379)
||+|. +..+|+||+|||||.|+.|.|++|+++.+ ...++.+++.++..++....+..++
T Consensus 408 ~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~ 473 (479)
T 3fmp_B 408 FDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDE 473 (479)
T ss_dssp ------------------------------------------------------------------
T ss_pred ecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECCCccHHH
Confidence 99994 66899999999999999999999998765 7889999999888887765554443
No 17
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.97 E-value=1e-30 Score=230.17 Aligned_cols=155 Identities=23% Similarity=0.455 Sum_probs=143.9
Q ss_pred ccceEEEEEEcCCccHHHHHHHHHHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCc
Q 016983 59 AEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGK 137 (379)
Q Consensus 59 ~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~ 137 (379)
+.++.|+++.++..+|...|.+++... +++++||||+++..++.++..|.. ++.+..+||+|++.+|+.+++.|++|+
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 81 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ 81 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 467889999999999999999999876 468999999999999999999975 899999999999999999999999999
Q ss_pred eeEEEeccccccCCCCCccceEEecCCCCChhHHHHHHhhccCCCCCceEEEEeChh-hHHHHHHHHHHhCCCceeeC
Q 016983 138 FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS-QRRTVRSLERDVGCKFEFVS 214 (379)
Q Consensus 138 ~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~-e~~~l~~le~~~~~~~~~~~ 214 (379)
.+|||||+++++|+|+|++++||+||+|.++.+|+||+||+||.|+.|.+++|+++. +...++.+++.++..++..+
T Consensus 82 ~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (172)
T 1t5i_A 82 RRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELP 159 (172)
T ss_dssp CSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC
T ss_pred CcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCC
Confidence 999999999999999999999999999999999999999999999999999999875 67889999999999888754
No 18
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.97 E-value=5.3e-31 Score=236.14 Aligned_cols=167 Identities=27% Similarity=0.397 Sum_probs=133.0
Q ss_pred HHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHHHHHHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEE
Q 016983 38 SRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEA 116 (379)
Q Consensus 38 ~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~ 116 (379)
...||++|..|.+.. ......++.++++.++...|...|.+++... ++++||||+++..++.++..|.. ++.+..
T Consensus 8 ~~~~~~~p~~i~v~~--~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~ 83 (191)
T 2p6n_A 8 SSGVDLGTENLYFQS--MGAASLDVIQEVEYVKEEAKMVYLLECLQKT--PPPVLIFAEKKADVDAIHEYLLLKGVEAVA 83 (191)
T ss_dssp ----------------------CCSEEEEEECCGGGHHHHHHHHHTTS--CSCEEEECSCHHHHHHHHHHHHHHTCCEEE
T ss_pred cccccCCCEEEEECC--CCCCCcCceEEEEEcChHHHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHHHHHHcCCcEEE
Confidence 457899999887643 3345678999999998889999998888653 56899999999999999999975 899999
Q ss_pred eeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEEecCCCCChhHHHHHHhhccCCCCCceEEEEeChh-h
Q 016983 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS-Q 195 (379)
Q Consensus 117 lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~-e 195 (379)
+||+|++.+|+.+++.|++|+.+|||||+++++|+|+|++++||+||+|.++++|+||+||+||.|+.|.+++|+++. +
T Consensus 84 lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~ 163 (191)
T 2p6n_A 84 IHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACD 163 (191)
T ss_dssp ECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSC
T ss_pred EeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999976 6
Q ss_pred HHHHHHHHHHhCC
Q 016983 196 RRTVRSLERDVGC 208 (379)
Q Consensus 196 ~~~l~~le~~~~~ 208 (379)
...++.+++.+..
T Consensus 164 ~~~~~~l~~~l~~ 176 (191)
T 2p6n_A 164 ESVLMDLKALLLE 176 (191)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7788888776543
No 19
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.97 E-value=1.7e-30 Score=226.85 Aligned_cols=156 Identities=31% Similarity=0.584 Sum_probs=139.8
Q ss_pred cceEEEEEEcCCcc-HHHHHHHHHHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCc
Q 016983 60 EGIKLYAISTTATS-KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGK 137 (379)
Q Consensus 60 ~~i~~~~~~~~~~~-k~~~L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~ 137 (379)
.++.|+++.++..+ |.+.|..++... +++++||||++++.++.++..|.. ++.+..+||+|++.+|..+++.|++|+
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 80 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGS 80 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 35778888887777 999999999876 468999999999999999999985 899999999999999999999999999
Q ss_pred eeEEEeccccccCCCCCccceEEecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHhCCCceeeCCC
Q 016983 138 FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (379)
Q Consensus 138 ~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p 216 (379)
.+|||||+++++|+|+|++++||+||+|.++.+|+||+||+||.|+.|.|++++++.+...++.+++.++..++..+.+
T Consensus 81 ~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (165)
T 1fuk_A 81 SRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSD 159 (165)
T ss_dssp CSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSC
T ss_pred CEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998876654
No 20
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.97 E-value=6.8e-32 Score=264.64 Aligned_cols=211 Identities=34% Similarity=0.589 Sum_probs=45.5
Q ss_pred CCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCc-cHHHHHHH
Q 016983 2 LAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT-SKRTILSD 80 (379)
Q Consensus 2 L~~GF~~di~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~-~k~~~L~~ 80 (379)
++.||...+..++..+++..|++++|||+|+.+.++...++.+|..+.+.. ......++.+++..+... .+...+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~ 252 (394)
T 1fuu_A 175 LSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK--DELTLEGIKQFYVNVEEEEYKYECLTD 252 (394)
T ss_dssp HHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-----------------------------
T ss_pred hCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecC--ccccCCCceEEEEEcCchhhHHHHHHH
Confidence 457899999999999999999999999999999999999999998876542 222334555555554443 37777777
Q ss_pred HHHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceE
Q 016983 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (379)
Q Consensus 81 ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~V 159 (379)
++... ..+++||||++++.++.++..|.. ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++|
T Consensus 253 ~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~V 331 (394)
T 1fuu_A 253 LYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLV 331 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhcC-CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEE
Confidence 77665 467999999999999999999985 7899999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHhCCCceeeCC
Q 016983 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSP 215 (379)
Q Consensus 160 I~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~ 215 (379)
|+|++|.++.+|+||+||+||.|+.|.|++++++.+...++.+++.++..++..+.
T Consensus 332 i~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 387 (394)
T 1fuu_A 332 INYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPS 387 (394)
T ss_dssp --------------------------------------------------------
T ss_pred EEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCc
Confidence 99999999999999999999999999999999999999999999998888876544
No 21
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.96 E-value=3.7e-30 Score=229.46 Aligned_cols=153 Identities=40% Similarity=0.564 Sum_probs=128.3
Q ss_pred ccccceEEEEEEcCCccHHHHHHHHHHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccC
Q 016983 57 KLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQ 135 (379)
Q Consensus 57 ~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~ 135 (379)
.++.++.++++.++..+|...|.+++....++.++||||+++..++.++..|.. ++.+..+||+|++.+|+.+++.|++
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~ 94 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 94 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 356789999999999999999999998875678999999999999999999985 8999999999999999999999999
Q ss_pred CceeEEEeccccccCCCCCccceEEecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHhCCC
Q 016983 136 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 209 (379)
Q Consensus 136 g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~~~~ 209 (379)
|+.+|||||+++++|+|+|++++||+||+|.++.+|+||+||+||.|+.|.|++|+++.+...++.+++.++..
T Consensus 95 g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 168 (185)
T 2jgn_A 95 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEA 168 (185)
T ss_dssp TSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHT
T ss_pred CCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999888877544
No 22
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.96 E-value=4.4e-29 Score=259.44 Aligned_cols=199 Identities=20% Similarity=0.324 Sum_probs=159.5
Q ss_pred CCCCC--hHHHHHH--HHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHH
Q 016983 1 MLAVG--FEEDVEL--ILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT 76 (379)
Q Consensus 1 mL~~G--F~~di~~--Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~ 76 (379)
|+++| |.+++.. ++....++.|+++||||+|+.+.+.+..++..+..+.+... ....++.+.... ....+..
T Consensus 177 is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~---~~r~nl~~~v~~-~~~~~~~ 252 (591)
T 2v1x_A 177 CSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTAS---FNRPNLYYEVRQ-KPSNTED 252 (591)
T ss_dssp GSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECC---CCCTTEEEEEEE-CCSSHHH
T ss_pred ccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecC---CCCcccEEEEEe-CCCcHHH
Confidence 35667 8777765 45455568999999999999998888888876654433321 122344433332 2223333
Q ss_pred HHHHHHHHH---cCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCC
Q 016983 77 ILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLD 152 (379)
Q Consensus 77 ~L~~ll~~~---~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiD 152 (379)
.+..+++.. .++.++||||+|++.++.++..|.. ++.+..+||+|++.+|..++++|++|+.+|||||+++++|||
T Consensus 253 ~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID 332 (591)
T 2v1x_A 253 FIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGID 332 (591)
T ss_dssp HHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCC
T ss_pred HHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCC
Confidence 444444333 2468999999999999999999985 899999999999999999999999999999999999999999
Q ss_pred CCccceEEecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHH
Q 016983 153 IPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 203 (379)
Q Consensus 153 ip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le 203 (379)
+|+|++||||++|.+.++|+||+||+||.|+.|.|++++++.|...++.+.
T Consensus 333 ~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~ 383 (591)
T 2v1x_A 333 KPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMV 383 (591)
T ss_dssp CSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHT
T ss_pred cccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999887776653
No 23
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.96 E-value=8.3e-29 Score=237.38 Aligned_cols=194 Identities=28% Similarity=0.540 Sum_probs=164.1
Q ss_pred CCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHHHH
Q 016983 2 LAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDL 81 (379)
Q Consensus 2 L~~GF~~di~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~l 81 (379)
.+.||..++..++...+...|++++|||+|..+.+....++.++..+... ....++.+.++......+.. + ..
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~-~~ 214 (337)
T 2z0m_A 142 FEMGFIDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC-----IGLANVEHKFVHVKDDWRSK-V-QA 214 (337)
T ss_dssp HHTTCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS-----GGGGGEEEEEEECSSSSHHH-H-HH
T ss_pred hccccHHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc-----cccCCceEEEEEeChHHHHH-H-HH
Confidence 45789999999999999999999999999999999999999888776432 22345666666665544332 2 33
Q ss_pred HHHHcCCCcEEEEecccccHHHHHHHHhcCCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEEe
Q 016983 82 ITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (379)
Q Consensus 82 l~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~ 161 (379)
+.. ..++++||||++++.++.++..|. .+..+||+|++.+|.+++++|++|+.+|||||+++++|+|+|++++||+
T Consensus 215 ~~~-~~~~~~lvf~~~~~~~~~l~~~l~---~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~ 290 (337)
T 2z0m_A 215 LRE-NKDKGVIVFVRTRNRVAKLVRLFD---NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVIN 290 (337)
T ss_dssp HHT-CCCSSEEEECSCHHHHHHHHTTCT---TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEE
T ss_pred HHh-CCCCcEEEEEcCHHHHHHHHHHhh---hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEE
Confidence 333 356899999999999999988876 5889999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHhC
Q 016983 162 YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 207 (379)
Q Consensus 162 ~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~~ 207 (379)
|++|.++.+|+||+||+||.|+.|.|++++. .|...++.+++.++
T Consensus 291 ~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 291 FDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp SSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred ecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 9999999999999999999999999999999 88888888887654
No 24
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.96 E-value=2.5e-29 Score=257.02 Aligned_cols=213 Identities=31% Similarity=0.503 Sum_probs=154.6
Q ss_pred CChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEc-CCccHHHHHHHHH
Q 016983 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAIST-TATSKRTILSDLI 82 (379)
Q Consensus 4 ~GF~~di~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~-~~~~k~~~L~~ll 82 (379)
.||...+..|+..++.+.|++++|||+|+.+..+...++.++..+.+... ......+.+.+... ....+...+..++
T Consensus 275 ~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~k~~~l~~ll 352 (508)
T 3fho_A 275 QGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTE--ELSVEGIKQLYMDCQSEEHKYNVLVELY 352 (508)
T ss_dssp --CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCC--C----CCCCEEEEC--CHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccc--cCCcccceEEEEECCchHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999887765432 22234444455544 3445777777777
Q ss_pred HHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEEe
Q 016983 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (379)
Q Consensus 83 ~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~ 161 (379)
... .++++||||++++.++.++..|.. ++.+..+||+|++.+|+.+++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 353 ~~~-~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~ 431 (508)
T 3fho_A 353 GLL-TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVN 431 (508)
T ss_dssp C----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC
T ss_pred Hhc-CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEE
Confidence 655 468999999999999999999985 789999999999999999999999999999999999999999999999999
Q ss_pred cCCC------CChhHHHHHHhhccCCCCCceEEEEeC-hhhHHHHHHHHHHhCCCceeeCCCCHH
Q 016983 162 YELP------NDPETFVHRSGRTGRAGKEGTAILMFT-SSQRRTVRSLERDVGCKFEFVSPPVVE 219 (379)
Q Consensus 162 ~~~P------~~~~~yiqR~GRtgR~G~~g~~i~l~~-~~e~~~l~~le~~~~~~~~~~~~p~~~ 219 (379)
++.| .+..+|+||+||+||.|+.|.|++++. +.+...++.+++.++..+++.+.+..+
T Consensus 432 ~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~ 496 (508)
T 3fho_A 432 YDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTDDYE 496 (508)
T ss_dssp ----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC--------
T ss_pred ECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCCccHH
Confidence 9999 789999999999999999999999998 456778999999999888877655443
No 25
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.92 E-value=1.7e-30 Score=228.10 Aligned_cols=156 Identities=29% Similarity=0.492 Sum_probs=142.2
Q ss_pred cceEEEEEEcCC-ccHHHHHHHHHHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCc
Q 016983 60 EGIKLYAISTTA-TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGK 137 (379)
Q Consensus 60 ~~i~~~~~~~~~-~~k~~~L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~ 137 (379)
.++.|+++.++. ..|...|..++... .++++||||+++..++.++..|.. ++.+..+||+|++.+|..+++.|++|+
T Consensus 2 ~~i~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~ 80 (170)
T 2yjt_D 2 KKIHQWYYRADDLEHKTALLVHLLKQP-EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 80 (170)
Confidence 356777777776 78999999888764 468999999999999999999985 789999999999999999999999999
Q ss_pred eeEEEeccccccCCCCCccceEEecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHhCCCceeeCCC
Q 016983 138 FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (379)
Q Consensus 138 ~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p 216 (379)
.+|||||+++++|+|+|++++||+||+|.++.+|+||+||+||.|+.|.+++++++.+...++.+++.++..+++..++
T Consensus 81 ~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (170)
T 2yjt_D 81 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVID 159 (170)
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888877664443
No 26
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.95 E-value=4e-27 Score=241.62 Aligned_cols=194 Identities=20% Similarity=0.366 Sum_probs=155.9
Q ss_pred CCCC--hHHHHHH---HHHhCCCCCcEEEEeeeCChHHHHHHHHhc--CCCceEEeecccccccccceEEEEEEcCCccH
Q 016983 2 LAVG--FEEDVEL---ILENLPPKRQSMLFSATMPSWVKKLSRKYL--DNPLNIDLVGNQDEKLAEGIKLYAISTTATSK 74 (379)
Q Consensus 2 L~~G--F~~di~~---Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l--~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k 74 (379)
.+.| |..+... +....| +.|++++|||+++.+..-....+ .+|..+ .... ...++.... .+...+
T Consensus 152 ~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~-~~~~----~r~~l~~~v--~~~~~~ 223 (523)
T 1oyw_A 152 SQWGHDFRPEYAALGQLRQRFP-TLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISSF----DRPNIRYML--MEKFKP 223 (523)
T ss_dssp CTTSSCCCHHHHGGGGHHHHCT-TSCEEEEESCCCHHHHHHHHHHHTCCSCEEE-ECCC----CCTTEEEEE--EECSSH
T ss_pred CcCCCccHHHHHHHHHHHHhCC-CCCEEEEeCCCCHHHHHHHHHHhCCCCCeEE-eCCC----CCCceEEEE--EeCCCH
Confidence 4556 7666554 455554 68999999999988765444333 345433 2211 123443332 233566
Q ss_pred HHHHHHHHHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCC
Q 016983 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI 153 (379)
Q Consensus 75 ~~~L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDi 153 (379)
...+..++... ++.++||||+|++.++.++..|.. ++.+..+||+|++++|+.+++.|++|+.+|||||+++++|+|+
T Consensus 224 ~~~l~~~l~~~-~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~ 302 (523)
T 1oyw_A 224 LDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINK 302 (523)
T ss_dssp HHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCC
T ss_pred HHHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCc
Confidence 77777777654 567999999999999999999985 8999999999999999999999999999999999999999999
Q ss_pred CccceEEecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHH
Q 016983 154 PNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 204 (379)
Q Consensus 154 p~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~ 204 (379)
|++++||||++|.+.++|+||+||+||.|..|.|++++++.+...++.+..
T Consensus 303 p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 303 PNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp TTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred cCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999888777654
No 27
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.95 E-value=3.9e-28 Score=241.07 Aligned_cols=193 Identities=22% Similarity=0.383 Sum_probs=156.7
Q ss_pred CCC-CChHHH-HHHHHHhCC-----------CCCcEEEEeee-CChHHH-HHHHHhcCCCceEEeecccccccccceEEE
Q 016983 1 MLA-VGFEED-VELILENLP-----------PKRQSMLFSAT-MPSWVK-KLSRKYLDNPLNIDLVGNQDEKLAEGIKLY 65 (379)
Q Consensus 1 mL~-~GF~~d-i~~Il~~~p-----------~~~Q~llfSAT-~p~~i~-~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~ 65 (379)
||+ +||.++ +..+++.+| .+.|+++|||| .|..+. .+...++. +.+. .......++.+.
T Consensus 161 ~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~i~~~ 234 (414)
T 3oiy_A 161 LLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVG--RLVSVARNITHV 234 (414)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSS--CCCCCCCSEEEE
T ss_pred HHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcC--ccccccccchhe
Confidence 456 999999 999999887 88999999999 676655 33443433 2111 122344667777
Q ss_pred EEEcCCccHHHHHHHHHHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEE-EeeCCCCHHHHHHHHhcccCCceeEEEe
Q 016983 66 AISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASE-ALHGDISQHQRERTLNGFRQGKFTVLVA 143 (379)
Q Consensus 66 ~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~-~lhg~m~~~~R~~~~~~F~~g~~~iLVa 143 (379)
+... ++.+.+..++... ++++||||+++..|+.++..|.. ++.+. .+||+ +|+ +++|++|+.+||||
T Consensus 235 ~~~~---~~~~~l~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLva 303 (414)
T 3oiy_A 235 RISS---RSKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIG 303 (414)
T ss_dssp EESS---CCHHHHHHHHHHH--CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEE
T ss_pred eecc---CHHHHHHHHHHHc--CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEE
Confidence 6654 4666677777764 58999999999999999999985 88998 99995 444 99999999999999
Q ss_pred ----ccccccCCCCCc-cceEEecCCC--CChhHHHHHHhhccCCC----CCceEEEEeChhhHHHHHHHHHHhC--CCc
Q 016983 144 ----TDVAARGLDIPN-VDLIIHYELP--NDPETFVHRSGRTGRAG----KEGTAILMFTSSQRRTVRSLERDVG--CKF 210 (379)
Q Consensus 144 ----Tdv~~rGiDip~-v~~VI~~~~P--~~~~~yiqR~GRtgR~G----~~g~~i~l~~~~e~~~l~~le~~~~--~~~ 210 (379)
|+++++|+|+|+ +++||+||+| .+..+|+||+||+||.| +.|.+++++ .+...++.+++.++ ..+
T Consensus 304 t~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~~~~~~ 381 (414)
T 3oiy_A 304 VQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLLLIAEE 381 (414)
T ss_dssp ECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHHHHHCC
T ss_pred ecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhcccccc
Confidence 999999999999 9999999999 99999999999999988 589999999 67778888888877 555
Q ss_pred ee
Q 016983 211 EF 212 (379)
Q Consensus 211 ~~ 212 (379)
+.
T Consensus 382 ~~ 383 (414)
T 3oiy_A 382 EI 383 (414)
T ss_dssp CE
T ss_pred cc
Confidence 44
No 28
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.94 E-value=5.6e-28 Score=254.76 Aligned_cols=126 Identities=21% Similarity=0.260 Sum_probs=112.6
Q ss_pred EcCCccHHHHHHHHHHH-HcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecc
Q 016983 68 STTATSKRTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (379)
Q Consensus 68 ~~~~~~k~~~L~~ll~~-~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTd 145 (379)
.+...+|..++...+.. +..+.++||||+|++.++.++..|.. ++++..+||++.+.+|+.+.++|+.| .|+||||
T Consensus 411 ~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATd 488 (844)
T 1tf5_A 411 YRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATN 488 (844)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEET
T ss_pred EeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCC
Confidence 34456788888777754 34578999999999999999999985 89999999999999998888888877 5999999
Q ss_pred ccccCCCCC--------ccceEEecCCCCChhHHHHHHhhccCCCCCceEEEEeChhh
Q 016983 146 VAARGLDIP--------NVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (379)
Q Consensus 146 v~~rGiDip--------~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e 195 (379)
+|+||+||+ ++.|||||++|.+.+.|+||+|||||+|.+|.+++|++..|
T Consensus 489 mAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 489 MAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp TSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred ccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHH
Confidence 999999999 88899999999999999999999999999999999998776
No 29
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.93 E-value=9.4e-26 Score=248.65 Aligned_cols=204 Identities=20% Similarity=0.350 Sum_probs=158.0
Q ss_pred CCC-CChHHH-HHHHHHhCC-----------CCCcEEEEeee-CChHHHH-HHHHhcCCCceEEeecccccccccceEEE
Q 016983 1 MLA-VGFEED-VELILENLP-----------PKRQSMLFSAT-MPSWVKK-LSRKYLDNPLNIDLVGNQDEKLAEGIKLY 65 (379)
Q Consensus 1 mL~-~GF~~d-i~~Il~~~p-----------~~~Q~llfSAT-~p~~i~~-l~~~~l~~p~~i~~~~~~~~~~~~~i~~~ 65 (379)
||+ +||.++ ++.|++.+| .+.|+++|||| .|..+.. +...++. +.+.. ......++.+.
T Consensus 218 ~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~--~~~~~~~i~~~ 291 (1104)
T 4ddu_A 218 LLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGR--LVSVARNITHV 291 (1104)
T ss_dssp HHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCB--CCCCCCCEEEE
T ss_pred hhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEecc--CCCCcCCceeE
Confidence 466 999999 999999888 89999999999 6766553 3333332 32221 23345667777
Q ss_pred EEEcCCccHHHHHHHHHHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEE-EeeCCCCHHHHHHHHhcccCCceeEEEe
Q 016983 66 AISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASE-ALHGDISQHQRERTLNGFRQGKFTVLVA 143 (379)
Q Consensus 66 ~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~-~lhg~m~~~~R~~~~~~F~~g~~~iLVa 143 (379)
++.+ ++...|..++... ++++||||++++.++.++..|.. ++.+. .+||+ |.+ +++|++|+.+||||
T Consensus 292 ~~~~---~k~~~L~~ll~~~--~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVa 360 (1104)
T 4ddu_A 292 RISS---RSKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIG 360 (1104)
T ss_dssp EESC---CCHHHHHHHHHHH--CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEE
T ss_pred EEec---CHHHHHHHHHHhc--CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEE
Confidence 7655 4666777777764 48999999999999999999985 88998 99993 555 99999999999999
Q ss_pred ----ccccccCCCCCc-cceEEecCCCC----------------------------------------------------
Q 016983 144 ----TDVAARGLDIPN-VDLIIHYELPN---------------------------------------------------- 166 (379)
Q Consensus 144 ----Tdv~~rGiDip~-v~~VI~~~~P~---------------------------------------------------- 166 (379)
||+++||+|+|+ |++|||||+|.
T Consensus 361 tas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~ 440 (1104)
T 4ddu_A 361 VQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEK 440 (1104)
T ss_dssp ETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHH
T ss_pred ecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 999999999999 99999999998
Q ss_pred --------------------ChhHHHHHHhhccCCCC----CceEEEEeChhhHHHHHHHHHHhC----CCceeeCCCCH
Q 016983 167 --------------------DPETFVHRSGRTGRAGK----EGTAILMFTSSQRRTVRSLERDVG----CKFEFVSPPVV 218 (379)
Q Consensus 167 --------------------~~~~yiqR~GRtgR~G~----~g~~i~l~~~~e~~~l~~le~~~~----~~~~~~~~p~~ 218 (379)
++.+|+||+|||||.|. .|.+++++ +|...++.|++.++ ..+.+....+.
T Consensus 441 i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~--~d~~~~~~l~~~~~~~~~~~~~~~~~~~~ 518 (1104)
T 4ddu_A 441 VKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLLLIAEEEIIEEAEANW 518 (1104)
T ss_dssp HHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC--CCHHHHHHHHHHHHHHTCCCEEEGGGCCH
T ss_pred HhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEE--ecHHHHHHHHHHHhhhcccccccccccCH
Confidence 88899999999999653 45666666 66777778777764 33434444445
Q ss_pred HHHHH
Q 016983 219 EDVLE 223 (379)
Q Consensus 219 ~~i~~ 223 (379)
+++++
T Consensus 519 ~~~~~ 523 (1104)
T 4ddu_A 519 KELVH 523 (1104)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 30
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.92 E-value=4.2e-25 Score=235.89 Aligned_cols=177 Identities=16% Similarity=0.368 Sum_probs=140.1
Q ss_pred HHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHH-HHHHHHHHH--c
Q 016983 10 VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT-ILSDLITVY--A 86 (379)
Q Consensus 10 i~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~-~L~~ll~~~--~ 86 (379)
+..|+... ++.|+++||||++. ..++ .++.++..+.+.+. ...+.++|...+..++.+ .+..++..+ .
T Consensus 231 l~~l~~~~-~~~~iIl~SAT~~~--~~l~-~~~~~~~vi~v~gr-----~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~ 301 (773)
T 2xau_A 231 LKQVVKRR-PDLKIIIMSATLDA--EKFQ-RYFNDAPLLAVPGR-----TYPVELYYTPEFQRDYLDSAIRTVLQIHATE 301 (773)
T ss_dssp HHHHHHHC-TTCEEEEEESCSCC--HHHH-HHTTSCCEEECCCC-----CCCEEEECCSSCCSCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhC-CCceEEEEeccccH--HHHH-HHhcCCCcccccCc-----ccceEEEEecCCchhHHHHHHHHHHHHHHhc
Confidence 34444444 47899999999965 3444 45665555654332 134666666655555443 333333332 2
Q ss_pred CCCcEEEEecccccHHHHHHHHh------------cCCcEEEeeCCCCHHHHHHHHhccc-----CCceeEEEecccccc
Q 016983 87 KGGKTIVFTQTKRDADEVSLALT------------SIIASEALHGDISQHQRERTLNGFR-----QGKFTVLVATDVAAR 149 (379)
Q Consensus 87 ~~~~~IIF~~t~~~~~~l~~~L~------------~~~~v~~lhg~m~~~~R~~~~~~F~-----~g~~~iLVaTdv~~r 149 (379)
.++++||||+++++++.++..|. .++.+..+||+|++++|.++++.|+ +|..+|||||+++++
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~ 381 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAET 381 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHh
Confidence 47899999999999999999886 2577999999999999999999999 999999999999999
Q ss_pred CCCCCccceEEecCC------------------CCChhHHHHHHhhccCCCCCceEEEEeChhhH
Q 016983 150 GLDIPNVDLIIHYEL------------------PNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 196 (379)
Q Consensus 150 GiDip~v~~VI~~~~------------------P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~ 196 (379)
|||+|++++||++++ |.+..+|+||+|||||. +.|.|+.|+++.+.
T Consensus 382 GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 382 SLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp TCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred CcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 999999999999888 89999999999999999 79999999988764
No 31
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.92 E-value=5e-26 Score=237.46 Aligned_cols=179 Identities=15% Similarity=0.175 Sum_probs=143.3
Q ss_pred CCCChHHHHHHHHHhCC-CCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHHH
Q 016983 2 LAVGFEEDVELILENLP-PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (379)
Q Consensus 2 L~~GF~~di~~Il~~~p-~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (379)
++++|..++..|+..++ +++|+++||||+|..+..++. .++..+.+.... +.......+..
T Consensus 289 ~~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~---------------~~~~~~~ll~~ 350 (618)
T 2whx_A 289 TDPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREI---------------PERSWNTGFDW 350 (618)
T ss_dssp CSHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCC---------------CSSCCSSSCHH
T ss_pred CCccHHHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeecccC---------------CHHHHHHHHHH
Confidence 47889999999999886 689999999999887554332 244444433110 10111112222
Q ss_pred HHHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceE
Q 016983 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (379)
Q Consensus 81 ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~V 159 (379)
+. . .++++||||+|++.|+.+++.|.. ++.+..+||+ +|++++++|++|+.+||||||++++|+|+| +++|
T Consensus 351 l~-~--~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~V 422 (618)
T 2whx_A 351 IT-D--YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRV 422 (618)
T ss_dssp HH-H--CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEE
T ss_pred HH-h--CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEE
Confidence 22 2 367999999999999999999985 8899999995 688899999999999999999999999997 9988
Q ss_pred --------------------EecCCCCChhHHHHHHhhccCCC-CCceEEEEeC---hhhHHHHHHHHHHh
Q 016983 160 --------------------IHYELPNDPETFVHRSGRTGRAG-KEGTAILMFT---SSQRRTVRSLERDV 206 (379)
Q Consensus 160 --------------------I~~~~P~~~~~yiqR~GRtgR~G-~~g~~i~l~~---~~e~~~l~~le~~~ 206 (379)
|||+.|.+.++|+||+|||||.| +.|.|++|++ +.|...++.+|+.+
T Consensus 423 Id~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i 493 (618)
T 2whx_A 423 IDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKM 493 (618)
T ss_dssp EECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHH
T ss_pred EECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHh
Confidence 78888999999999999999997 4899999998 78888888888865
No 32
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.91 E-value=4e-24 Score=235.74 Aligned_cols=198 Identities=22% Similarity=0.313 Sum_probs=147.8
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChH--HHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCc------
Q 016983 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSW--VKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT------ 72 (379)
Q Consensus 1 mL~~GF~~di~~Il~~~p~~~Q~llfSAT~p~~--i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~------ 72 (379)
|+++||...++.++..+|++.|+++||||+|.. +.++...+..+|..+...... +..++++++.....
T Consensus 302 l~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~r----p~pl~~~~~~~~~~~~~~~v 377 (1108)
T 3l9o_A 302 MRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR----PTPLQHYLFPAHGDGIYLVV 377 (1108)
T ss_dssp TTSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCC----SSCEEEEEEETTSSCCEEEE
T ss_pred ccccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC----cccceEEEeecCCcceeeee
Confidence 577899999999999999999999999999874 456666666677665433211 22234433321100
Q ss_pred -------------------------------------------cH---HHHHHHHHHHH--cCCCcEEEEecccccHHHH
Q 016983 73 -------------------------------------------SK---RTILSDLITVY--AKGGKTIVFTQTKRDADEV 104 (379)
Q Consensus 73 -------------------------------------------~k---~~~L~~ll~~~--~~~~~~IIF~~t~~~~~~l 104 (379)
.+ ...+..++..+ ....++||||++++.|+.+
T Consensus 378 d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~l 457 (1108)
T 3l9o_A 378 DEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEEL 457 (1108)
T ss_dssp ETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHH
T ss_pred ccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHH
Confidence 00 22333344332 2356999999999999999
Q ss_pred HHHHhc-CC---------------------------------------cEEEeeCCCCHHHHHHHHhcccCCceeEEEec
Q 016983 105 SLALTS-II---------------------------------------ASEALHGDISQHQRERTLNGFRQGKFTVLVAT 144 (379)
Q Consensus 105 ~~~L~~-~~---------------------------------------~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaT 144 (379)
+..|.. ++ .+..+||+|++.+|+.+++.|++|.++|||||
T Consensus 458 a~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT 537 (1108)
T 3l9o_A 458 ALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFAT 537 (1108)
T ss_dssp HHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEE
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEEC
Confidence 998753 11 17899999999999999999999999999999
Q ss_pred cccccCCCCCccceEEecCCC--------CChhHHHHHHhhccCCC--CCceEEEEeChh-hHHHHHHH
Q 016983 145 DVAARGLDIPNVDLIIHYELP--------NDPETFVHRSGRTGRAG--KEGTAILMFTSS-QRRTVRSL 202 (379)
Q Consensus 145 dv~~rGiDip~v~~VI~~~~P--------~~~~~yiqR~GRtgR~G--~~g~~i~l~~~~-e~~~l~~l 202 (379)
+++++|||+|++++||+++.| .++.+|+||+|||||.| ..|.|++++++. +...++.+
T Consensus 538 ~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l 606 (1108)
T 3l9o_A 538 ETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 606 (1108)
T ss_dssp SCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHH
T ss_pred cHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHH
Confidence 999999999999999988764 46778999999999999 789999998875 44444444
No 33
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.91 E-value=3.3e-25 Score=233.28 Aligned_cols=127 Identities=25% Similarity=0.252 Sum_probs=114.2
Q ss_pred EEcCCccHHHHHHHHHHH-HcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEec
Q 016983 67 ISTTATSKRTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVAT 144 (379)
Q Consensus 67 ~~~~~~~k~~~L~~ll~~-~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaT 144 (379)
+.+...+|..++...+.. +..+.++||||+|+..++.++..|.. ++++.++||++.+.+++.+.++|+.| .|+|||
T Consensus 419 v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIAT 496 (853)
T 2fsf_A 419 VYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIAT 496 (853)
T ss_dssp EESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEE
T ss_pred EEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEec
Confidence 344556788888887754 34578999999999999999999985 89999999999999999999999998 699999
Q ss_pred cccccCCCCCc--------------------------------c-----ceEEecCCCCChhHHHHHHhhccCCCCCceE
Q 016983 145 DVAARGLDIPN--------------------------------V-----DLIIHYELPNDPETFVHRSGRTGRAGKEGTA 187 (379)
Q Consensus 145 dv~~rGiDip~--------------------------------v-----~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~ 187 (379)
|+|+||+||+. | .|||||+.|.+...|.||+|||||+|.+|.+
T Consensus 497 nmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s 576 (853)
T 2fsf_A 497 NMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSS 576 (853)
T ss_dssp SCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred ccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeE
Confidence 99999999987 3 6999999999999999999999999999999
Q ss_pred EEEeChhh
Q 016983 188 ILMFTSSQ 195 (379)
Q Consensus 188 i~l~~~~e 195 (379)
++|++..|
T Consensus 577 ~~fls~eD 584 (853)
T 2fsf_A 577 RFYLSMED 584 (853)
T ss_dssp EEEEETTS
T ss_pred EEEecccH
Confidence 99999876
No 34
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.91 E-value=4.2e-25 Score=243.05 Aligned_cols=206 Identities=18% Similarity=0.280 Sum_probs=158.1
Q ss_pred hHHHHHHHHHhC-----------CCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccH
Q 016983 6 FEEDVELILENL-----------PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSK 74 (379)
Q Consensus 6 F~~di~~Il~~~-----------p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k 74 (379)
|..+++.++..+ +..+|+++||||+|.. ..++..++.++..+.+.. ......++.++++ ..++
T Consensus 190 ~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~--~~~~~~~i~~~~~---~~~k 263 (1054)
T 1gku_B 190 ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGS--SRITVRNVEDVAV---NDES 263 (1054)
T ss_dssp STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSC--CEECCCCEEEEEE---SCCC
T ss_pred ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccC--cccCcCCceEEEe---chhH
Confidence 456777777776 4678999999999988 666666666665554332 2233456677666 2456
Q ss_pred HHHHHHHHHHHcCCCcEEEEecccccHHHHHHHHhcCCcEEEeeCCCCHHHHHHHHhcccCCceeEEEe----ccccccC
Q 016983 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA----TDVAARG 150 (379)
Q Consensus 75 ~~~L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVa----Tdv~~rG 150 (379)
...|..++... ++++||||+|++.|+.++..|...+.+..+||+| +.++++|++|+.+|||| ||++++|
T Consensus 264 ~~~L~~ll~~~--~~~~LVF~~t~~~a~~l~~~L~~~~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rG 336 (1054)
T 1gku_B 264 ISTLSSILEKL--GTGGIIYARTGEEAEEIYESLKNKFRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRG 336 (1054)
T ss_dssp TTTTHHHHTTS--CSCEEEEESSHHHHHHHHHTTTTSSCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CC
T ss_pred HHHHHHHHhhc--CCCEEEEEcCHHHHHHHHHHHhhccCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEec
Confidence 66677777654 5789999999999999999998668999999998 37889999999999999 9999999
Q ss_pred CCCCcc-ceEEecCCC----------------------------------------------------------------
Q 016983 151 LDIPNV-DLIIHYELP---------------------------------------------------------------- 165 (379)
Q Consensus 151 iDip~v-~~VI~~~~P---------------------------------------------------------------- 165 (379)
+|+|+| ++|||||+|
T Consensus 337 IDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 416 (1054)
T 1gku_B 337 LDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVV 416 (1054)
T ss_dssp SCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEE
T ss_pred cccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeE
Confidence 999995 999999999
Q ss_pred -------CChhHHHHHHhhccCCCCCc--eEEEEeChhhHHHHHHHHHHhC---CCceeeCCCCHHHHHHH
Q 016983 166 -------NDPETFVHRSGRTGRAGKEG--TAILMFTSSQRRTVRSLERDVG---CKFEFVSPPVVEDVLES 224 (379)
Q Consensus 166 -------~~~~~yiqR~GRtgR~G~~g--~~i~l~~~~e~~~l~~le~~~~---~~~~~~~~p~~~~i~~~ 224 (379)
.+..+|+||+|||||.|..| .+++++...+...++.+++.++ ..+.....++.+++++.
T Consensus 417 ~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~ 487 (1054)
T 1gku_B 417 REGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKLYDIEFKSIDEVDFEKLSRE 487 (1054)
T ss_dssp ETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHTTSSCCCBCSCCCHHHHHHH
T ss_pred eecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhhccCccccCCcCCHHHHHHh
Confidence 78999999999999987765 4787777778888888888876 35555666666666654
No 35
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.90 E-value=2.3e-25 Score=223.95 Aligned_cols=176 Identities=19% Similarity=0.204 Sum_probs=124.4
Q ss_pred ChHHHHHHHHHhC-CCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHHHHHH
Q 016983 5 GFEEDVELILENL-PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 83 (379)
Q Consensus 5 GF~~di~~Il~~~-p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~ 83 (379)
+|..++..+.... +.+.|+++||||+|+.+..++. .+..+... ....+...+...+..+.+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~----~~~~~~~~--------------~~~~~~~~~~~~~~~l~~ 175 (440)
T 1yks_A 114 ASIAARGWAAHRARANESATILMTATPPGTSDEFPH----SNGEIEDV--------------QTDIPSEPWNTGHDWILA 175 (440)
T ss_dssp HHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCC----CSSCEEEE--------------ECCCCSSCCSSSCHHHHH
T ss_pred chHHHHHHHHHHhccCCceEEEEeCCCCchhhhhhh----cCCCeeEe--------------eeccChHHHHHHHHHHHh
Confidence 3444444444443 3689999999999887543332 11111111 001111111222222222
Q ss_pred HHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEEe-
Q 016983 84 VYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH- 161 (379)
Q Consensus 84 ~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~- 161 (379)
.++++||||++++.++.+++.|.. ++.+..+|| ++|++++++|++|+.+|||||+++++|+|+| +++|||
T Consensus 176 ---~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~ 247 (440)
T 1yks_A 176 ---DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDC 247 (440)
T ss_dssp ---CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEEC
T ss_pred ---cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeC
Confidence 368999999999999999999985 889999999 4688999999999999999999999999999 999996
Q ss_pred ------------------cCCCCChhHHHHHHhhccCC-CCCceEEEEe---ChhhHHHHHHHHHHh
Q 016983 162 ------------------YELPNDPETFVHRSGRTGRA-GKEGTAILMF---TSSQRRTVRSLERDV 206 (379)
Q Consensus 162 ------------------~~~P~~~~~yiqR~GRtgR~-G~~g~~i~l~---~~~e~~~l~~le~~~ 206 (379)
|+.|.+.++|+||+||+||. |+.|.|++|+ ++.+...++.++...
T Consensus 248 g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~ 314 (440)
T 1yks_A 248 RTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASM 314 (440)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred CccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHh
Confidence 89999999999999999998 6899999996 677888888888765
No 36
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.90 E-value=9.7e-25 Score=227.48 Aligned_cols=187 Identities=22% Similarity=0.296 Sum_probs=141.5
Q ss_pred CCCCChHHHHHHHHHhCCCCCc--EEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHH
Q 016983 1 MLAVGFEEDVELILENLPPKRQ--SMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL 78 (379)
Q Consensus 1 mL~~GF~~di~~Il~~~p~~~Q--~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L 78 (379)
|++++|..++..|++.++..+| ++++|||+|..+. ...|....+.... ...+..+ .....
T Consensus 329 ~l~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~~i~------~~~p~i~~v~~~~----~~~i~~~----~~~~~---- 390 (666)
T 3o8b_A 329 STDSTTILGIGTVLDQAETAGARLVVLATATPPGSVT------VPHPNIEEVALSN----TGEIPFY----GKAIP---- 390 (666)
T ss_dssp CCSHHHHHHHHHHHHHTTTTTCSEEEEEESSCTTCCC------CCCTTEEEEECBS----CSSEEET----TEEEC----
T ss_pred hcCccHHHHHHHHHHhhhhcCCceEEEECCCCCcccc------cCCcceEEEeecc----cchhHHH----Hhhhh----
Confidence 6899999999999999998888 6777999988421 1233322221100 1111111 00000
Q ss_pred HHHHHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccc
Q 016983 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (379)
Q Consensus 79 ~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~ 157 (379)
+.. ..++++||||+|++.++.+++.|.. ++.+..+||+|++++ |+++..+||||||+++||||+| ++
T Consensus 391 ---l~~-~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~ 458 (666)
T 3o8b_A 391 ---IEA-IRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FD 458 (666)
T ss_dssp ---GGG-SSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BS
T ss_pred ---hhh-ccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-Cc
Confidence 111 2478999999999999999999985 899999999999875 4556669999999999999997 99
Q ss_pred eEE----------ecC-----------CCCChhHHHHHHhhccCCCCCceEEEEeChhhHHH--H--HHHHHHhCCCcee
Q 016983 158 LII----------HYE-----------LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRT--V--RSLERDVGCKFEF 212 (379)
Q Consensus 158 ~VI----------~~~-----------~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~--l--~~le~~~~~~~~~ 212 (379)
+|| ||| .|.+.++|+||+||||| |+.|. +.|+++.|... + +.+++..+..+++
T Consensus 459 ~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~~~l~~~~i~~~~~~~~~~ 536 (666)
T 3o8b_A 459 SVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPSGMFDSSVLCECYDAGCAW 536 (666)
T ss_dssp EEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCSSBCCHHHHHHHHHHHHHT
T ss_pred EEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhcccccHHHHHHHhcCCccc
Confidence 988 677 89999999999999999 99999 99999887665 4 7788877777777
Q ss_pred eCCCCHH
Q 016983 213 VSPPVVE 219 (379)
Q Consensus 213 ~~~p~~~ 219 (379)
..+|..+
T Consensus 537 ~~l~~~~ 543 (666)
T 3o8b_A 537 YELTPAE 543 (666)
T ss_dssp SCCCHHH
T ss_pred ccCCchH
Confidence 6666543
No 37
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.90 E-value=5.1e-24 Score=224.70 Aligned_cols=127 Identities=24% Similarity=0.280 Sum_probs=112.4
Q ss_pred EcCCccHHHHHHHHHHH-HcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecc
Q 016983 68 STTATSKRTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (379)
Q Consensus 68 ~~~~~~k~~~L~~ll~~-~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTd 145 (379)
......|..++...+.. +..+.++||||+|++.++.++..|.. ++++..|||++.+.++..+.++|+.| .|+||||
T Consensus 439 ~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATn 516 (922)
T 1nkt_A 439 YKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATN 516 (922)
T ss_dssp ESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEET
T ss_pred EeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecc
Confidence 34445688777776654 34567999999999999999999985 89999999999888888899999988 6999999
Q ss_pred ccccCCCCCcc----------------------------------------------------ceEEecCCCCChhHHHH
Q 016983 146 VAARGLDIPNV----------------------------------------------------DLIIHYELPNDPETFVH 173 (379)
Q Consensus 146 v~~rGiDip~v----------------------------------------------------~~VI~~~~P~~~~~yiq 173 (379)
+|+||+||+.+ .|||||+.|.+...|.|
T Consensus 517 mAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~q 596 (922)
T 1nkt_A 517 MAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQ 596 (922)
T ss_dssp TCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHH
T ss_pred hhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHH
Confidence 99999999975 59999999999999999
Q ss_pred HHhhccCCCCCceEEEEeChhhH
Q 016983 174 RSGRTGRAGKEGTAILMFTSSQR 196 (379)
Q Consensus 174 R~GRtgR~G~~g~~i~l~~~~e~ 196 (379)
|+|||||+|.+|.+++|++..|.
T Consensus 597 r~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 597 LRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHHTSSGGGCCEEEEEEEETTSH
T ss_pred HhcccccCCCCeeEEEEechhHH
Confidence 99999999999999999998764
No 38
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.90 E-value=6.7e-23 Score=224.20 Aligned_cols=197 Identities=22% Similarity=0.319 Sum_probs=148.3
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHH---hcCCCceEEeecccccccccceEEEEEEcC-------
Q 016983 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRK---YLDNPLNIDLVGNQDEKLAEGIKLYAISTT------- 70 (379)
Q Consensus 1 mL~~GF~~di~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~---~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~------- 70 (379)
|.++++...++.++..+|.+.|++++|||+|.. .+++.+ ...+|..+...... +..+.++++..+
T Consensus 204 l~d~~rg~~~e~il~~l~~~~~il~LSATi~n~-~e~a~~l~~~~~~~~~vi~~~~r----p~pl~~~~~~~~~~~~~~~ 278 (1010)
T 2xgj_A 204 MRDKERGVVWEETIILLPDKVRYVFLSATIPNA-MEFAEWICKIHSQPCHIVYTNFR----PTPLQHYLFPAHGDGIYLV 278 (1010)
T ss_dssp GGCTTTHHHHHHHHHHSCTTCEEEEEECCCTTH-HHHHHHHHHHHTSCEEEEEECCC----SSCEEEEEEETTSSCCEEE
T ss_pred hcccchhHHHHHHHHhcCCCCeEEEEcCCCCCH-HHHHHHHHhhcCCCeEEEecCCC----cccceEEEEecCCcceeee
Confidence 457788888999999999999999999999864 334433 33556555333211 223444443311
Q ss_pred --Ccc-----------------------------------H--------HHHHHHHHHHH--cCCCcEEEEecccccHHH
Q 016983 71 --ATS-----------------------------------K--------RTILSDLITVY--AKGGKTIVFTQTKRDADE 103 (379)
Q Consensus 71 --~~~-----------------------------------k--------~~~L~~ll~~~--~~~~~~IIF~~t~~~~~~ 103 (379)
... | ...+..++... ....++||||+|+..|+.
T Consensus 279 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~ 358 (1010)
T 2xgj_A 279 VDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEE 358 (1010)
T ss_dssp ECTTCCBCHHHHHHHHHTCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHH
T ss_pred eccccccchHHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHH
Confidence 000 1 12223333332 134699999999999999
Q ss_pred HHHHHhc-CC---------------------------------------cEEEeeCCCCHHHHHHHHhcccCCceeEEEe
Q 016983 104 VSLALTS-II---------------------------------------ASEALHGDISQHQRERTLNGFRQGKFTVLVA 143 (379)
Q Consensus 104 l~~~L~~-~~---------------------------------------~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVa 143 (379)
++..|.. ++ .+..+||+|++.+|+.+++.|++|.++||||
T Consensus 359 la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVA 438 (1010)
T 2xgj_A 359 LALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFA 438 (1010)
T ss_dssp HHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEE
Confidence 9988864 22 2788999999999999999999999999999
Q ss_pred ccccccCCCCCccceEEe----cCC----CCChhHHHHHHhhccCCCC--CceEEEEeChh-hHHHHHHH
Q 016983 144 TDVAARGLDIPNVDLIIH----YEL----PNDPETFVHRSGRTGRAGK--EGTAILMFTSS-QRRTVRSL 202 (379)
Q Consensus 144 Tdv~~rGiDip~v~~VI~----~~~----P~~~~~yiqR~GRtgR~G~--~g~~i~l~~~~-e~~~l~~l 202 (379)
|+++++|+|+|++++||+ ||. |.++.+|+||+||+||.|. .|.|++++++. +...++.+
T Consensus 439 T~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 439 TETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 508 (1010)
T ss_dssp EGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHH
T ss_pred ehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHH
Confidence 999999999999999999 999 8999999999999999996 59999999865 55555555
No 39
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.90 E-value=2.8e-23 Score=220.04 Aligned_cols=198 Identities=22% Similarity=0.329 Sum_probs=144.6
Q ss_pred CCCChHHHHHHHHHhC---CCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEE-------EEcCC
Q 016983 2 LAVGFEEDVELILENL---PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYA-------ISTTA 71 (379)
Q Consensus 2 L~~GF~~di~~Il~~~---p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~-------~~~~~ 71 (379)
.+.++...++.++..+ +++.|++++|||+|. ..+++++ +..+ .+..... . ..+...+ +....
T Consensus 151 ~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~~-l~~~-~~~~~~r---~--~~l~~~~~~~~~~~~~~~~ 222 (702)
T 2p6r_A 151 DSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAEW-LDAD-YYVSDWR---P--VPLVEGVLCEGTLELFDGA 222 (702)
T ss_dssp GCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHHH-TTCE-EEECCCC---S--SCEEEEEECSSEEEEEETT
T ss_pred CCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHHH-hCCC-cccCCCC---C--ccceEEEeeCCeeeccCcc
Confidence 3557778888887766 578999999999986 5666664 4422 2221110 0 1111111 11100
Q ss_pred ------ccHHHHHHHHHHHHcCCCcEEEEecccccHHHHHHHHhcC-------------------------------CcE
Q 016983 72 ------TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-------------------------------IAS 114 (379)
Q Consensus 72 ------~~k~~~L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~~-------------------------------~~v 114 (379)
..+...+.+.+ .+++++||||+++++++.++..|... ..+
T Consensus 223 ~~~~~~~~~~~~~~~~~---~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v 299 (702)
T 2p6r_A 223 FSTSRRVKFEELVEECV---AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGA 299 (702)
T ss_dssp EEEEEECCHHHHHHHHH---HTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTC
T ss_pred hhhhhhhhHHHHHHHHH---hcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCe
Confidence 01444444443 45789999999999999999888631 358
Q ss_pred EEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEEe----cC---CCCChhHHHHHHhhccCCC--CCc
Q 016983 115 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YE---LPNDPETFVHRSGRTGRAG--KEG 185 (379)
Q Consensus 115 ~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~----~~---~P~~~~~yiqR~GRtgR~G--~~g 185 (379)
..+||+|++++|..+++.|++|..+|||||+++++|+|+|++++||+ || .|.+..+|+||+||+||.| ..|
T Consensus 300 ~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G 379 (702)
T 2p6r_A 300 AFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERG 379 (702)
T ss_dssp CEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCE
T ss_pred EEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCc
Confidence 89999999999999999999999999999999999999999999999 76 7899999999999999998 589
Q ss_pred eEEEEeChhhHHHHHHHHHHhCCCcee
Q 016983 186 TAILMFTSSQRRTVRSLERDVGCKFEF 212 (379)
Q Consensus 186 ~~i~l~~~~e~~~l~~le~~~~~~~~~ 212 (379)
.|++++++.+.. ..+++++....+.
T Consensus 380 ~~~~l~~~~~~~--~~~~~~l~~~~e~ 404 (702)
T 2p6r_A 380 EAIIIVGKRDRE--IAVKRYIFGEPER 404 (702)
T ss_dssp EEEEECCGGGHH--HHHHTTTSSCCCC
T ss_pred eEEEEecCccHH--HHHHHHhcCCCCC
Confidence 999999988732 2233444444443
No 40
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.90 E-value=3.5e-23 Score=211.79 Aligned_cols=124 Identities=20% Similarity=0.330 Sum_probs=67.3
Q ss_pred cHHHHHHHHHHHH---cCCCcEEEEecccccHHHHHHHHhc-------------CCcEEEeeCCCCHHHHHHHHhcccC-
Q 016983 73 SKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-------------IIASEALHGDISQHQRERTLNGFRQ- 135 (379)
Q Consensus 73 ~k~~~L~~ll~~~---~~~~~~IIF~~t~~~~~~l~~~L~~-------------~~~v~~lhg~m~~~~R~~~~~~F~~- 135 (379)
.|...|..++... .++.++||||+++..++.++..|.. +.....+||+|++.+|..++++|++
T Consensus 372 ~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~ 451 (556)
T 4a2p_A 372 PKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTS 451 (556)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC----------------------------
T ss_pred hHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhccc
Confidence 4666666666543 4578999999999999999999964 2344567888999999999999999
Q ss_pred CceeEEEeccccccCCCCCccceEEecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHH
Q 016983 136 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRT 198 (379)
Q Consensus 136 g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~ 198 (379)
|+++|||||+++++|+|+|++++|||||+|+++..|+||+|| ||. +.|.+++|+++.+...
T Consensus 452 g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~ 512 (556)
T 4a2p_A 452 KDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVE 512 (556)
T ss_dssp --CCEEEEEC-----------CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHHH
T ss_pred CceEEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchHH
Confidence 999999999999999999999999999999999999999999 999 7999999999876543
No 41
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.90 E-value=6.7e-23 Score=215.58 Aligned_cols=175 Identities=19% Similarity=0.314 Sum_probs=132.6
Q ss_pred CCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHHHHHHHHcCCCcEEEEeccc
Q 016983 19 PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTK 98 (379)
Q Consensus 19 ~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~ 98 (379)
..+|+++||||+++.....+ ... +......... ... ...+.........++..+......+.++||||+|+
T Consensus 385 ~~~q~i~~SAT~~~~~~~~~----~~~--~~~~~r~~~l-~~p--~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 455 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEHT----DEM--VEQIIRPTGL-LDP--LIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTK 455 (661)
T ss_dssp TCSEEEEECSSCCHHHHHHC----SSC--EEECCCTTCC-CCC--EEEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred cCCCEEEEecCCChhHHHhh----hCe--eeeeecccCC-CCC--eEEEecccchHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 47899999999987543321 111 2211111111 111 12222222233344444444444578999999999
Q ss_pred ccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEEecCC-----CCChhHHH
Q 016983 99 RDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL-----PNDPETFV 172 (379)
Q Consensus 99 ~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~-----P~~~~~yi 172 (379)
..++.++..|.. ++.+..+||+|++.+|..++++|++|+++|||||+++++|+|+|++++||++|. |.+..+|+
T Consensus 456 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~i 535 (661)
T 2d7d_A 456 KMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 535 (661)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHH
T ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHH
Confidence 999999999985 899999999999999999999999999999999999999999999999999997 99999999
Q ss_pred HHHhhccCCCCCceEEEEeChhhHHHHHHHH
Q 016983 173 HRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 203 (379)
Q Consensus 173 qR~GRtgR~G~~g~~i~l~~~~e~~~l~~le 203 (379)
||+|||||. ..|.|++++++.+..+.+.++
T Consensus 536 Qr~GRagR~-~~G~~i~~~~~~~~~~~~~i~ 565 (661)
T 2d7d_A 536 QTIGRAARN-AEGRVIMYADKITKSMEIAIN 565 (661)
T ss_dssp HHHHTTTTS-TTCEEEEECSSCCHHHHHHHH
T ss_pred HHhCcccCC-CCCEEEEEEeCCCHHHHHHHH
Confidence 999999998 689999999987665544443
No 42
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.89 E-value=2.9e-23 Score=220.50 Aligned_cols=199 Identities=22% Similarity=0.238 Sum_probs=148.0
Q ss_pred CCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEE------EcC-----
Q 016983 2 LAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAI------STT----- 70 (379)
Q Consensus 2 L~~GF~~di~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~------~~~----- 70 (379)
.+.++...++.++..++.+.|++++|||+|. ..+++++ +..+ .+... ... ..+...+. ...
T Consensus 151 ~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~~-l~~~-~~~~~---~rp--~~l~~~~~~~~~~~~~~~~~~~ 222 (720)
T 2zj8_A 151 GSRDRGATLEVILAHMLGKAQIIGLSATIGN-PEELAEW-LNAE-LIVSD---WRP--VKLRRGVFYQGFVTWEDGSIDR 222 (720)
T ss_dssp GCTTTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHHH-TTEE-EEECC---CCS--SEEEEEEEETTEEEETTSCEEE
T ss_pred CCCcccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHHH-hCCc-ccCCC---CCC--CcceEEEEeCCeeeccccchhh
Confidence 3557889999999998878999999999986 4666654 4321 12111 001 11111111 111
Q ss_pred CccHHHHHHHHHHHHcCCCcEEEEecccccHHHHHHHHhcC----------------------------------CcEEE
Q 016983 71 ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI----------------------------------IASEA 116 (379)
Q Consensus 71 ~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~~----------------------------------~~v~~ 116 (379)
...+...+.+.+ .+++++||||+|++.++.++..|... ..+..
T Consensus 223 ~~~~~~~~~~~~---~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~ 299 (720)
T 2zj8_A 223 FSSWEELVYDAI---RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAF 299 (720)
T ss_dssp CSSTTHHHHHHH---HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEE
T ss_pred hhHHHHHHHHHH---hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeee
Confidence 123344444433 35789999999999999999888631 24899
Q ss_pred eeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEEe----cC----CCCChhHHHHHHhhccCCC--CCce
Q 016983 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YE----LPNDPETFVHRSGRTGRAG--KEGT 186 (379)
Q Consensus 117 lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~----~~----~P~~~~~yiqR~GRtgR~G--~~g~ 186 (379)
+||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||+ || .|.+..+|+||+||+||.| ..|.
T Consensus 300 ~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~ 379 (720)
T 2zj8_A 300 HHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGE 379 (720)
T ss_dssp ECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEE
T ss_pred ecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCce
Confidence 999999999999999999999999999999999999999999999 77 6899999999999999998 5799
Q ss_pred EEEEeChhhHHHHHHHHHHhCCCceee
Q 016983 187 AILMFTSSQRRTVRSLERDVGCKFEFV 213 (379)
Q Consensus 187 ~i~l~~~~e~~~l~~le~~~~~~~~~~ 213 (379)
|++++++.+. ...+++.+...++..
T Consensus 380 ~~~l~~~~~~--~~~~~~~~~~~~~~i 404 (720)
T 2zj8_A 380 GIIVSTSDDP--REVMNHYIFGKPEKL 404 (720)
T ss_dssp EEEECSSSCH--HHHHHHHTTSCCCCC
T ss_pred EEEEecCccH--HHHHHHHhcCCCCCc
Confidence 9999998773 233455665555543
No 43
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.89 E-value=8.4e-23 Score=211.55 Aligned_cols=204 Identities=19% Similarity=0.189 Sum_probs=149.5
Q ss_pred cEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEE-EEEEcCCccHHHHHHHHHHHH-cCCCcEEEEecccc
Q 016983 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL-YAISTTATSKRTILSDLITVY-AKGGKTIVFTQTKR 99 (379)
Q Consensus 22 Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~-~~~~~~~~~k~~~L~~ll~~~-~~~~~~IIF~~t~~ 99 (379)
.+..||+|+..+..++.+.|-- ..+.+. .. .....+.+ ..+.....+|..++...+... ..+.++||||+|+.
T Consensus 411 kL~GMTGTa~te~~Ef~~iY~l--~vv~IP-tn--kp~~R~d~~d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e 485 (822)
T 3jux_A 411 KLAGMTGTAKTEESEFVQVYGM--EVVVIP-TH--KPMIRKDHDDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIE 485 (822)
T ss_dssp EEEEEESSCGGGHHHHHHHSCC--CEEECC-CS--SCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHH
T ss_pred HHeEECCCCchHHHHHHHHhCC--eEEEEC-CC--CCcceeecCcEEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHH
Confidence 5778999999998888887743 333332 11 11122222 234455567888887777643 45789999999999
Q ss_pred cHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCC--------ccceEEecCCCCChhH
Q 016983 100 DADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP--------NVDLIIHYELPNDPET 170 (379)
Q Consensus 100 ~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip--------~v~~VI~~~~P~~~~~ 170 (379)
.++.++..|.. ++++..+||++.+.++..+..+++.| .|+||||+|+||+||+ +..+|||+++|.+...
T Consensus 486 ~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~ 563 (822)
T 3jux_A 486 KSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRI 563 (822)
T ss_dssp HHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHH
T ss_pred HHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHH
Confidence 99999999986 89999999996666666666777776 5999999999999998 6679999999999999
Q ss_pred HHHHHhhccCCCCCceEEEEeChhhH-------HHHHHHHHHhCCCceeeCCCCHHHHHHHHHHHHHHHHcc
Q 016983 171 FVHRSGRTGRAGKEGTAILMFTSSQR-------RTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG 235 (379)
Q Consensus 171 yiqR~GRtgR~G~~g~~i~l~~~~e~-------~~l~~le~~~~~~~~~~~~p~~~~i~~~~~~~~~~~l~~ 235 (379)
|+||+|||||+|.+|.+++|++..|. ..++.+.+.++.+- ..|.....+...++.+...++.
T Consensus 564 y~qriGRTGRqG~~G~a~~fvsleD~l~r~fg~~~~~~~m~~~~~~~---~~~i~~~~v~~~ie~AQkkvE~ 632 (822)
T 3jux_A 564 DNQLRGRAGRQGDPGESIFFLSLEDDLLRIFGSEQIGKVMNILKIEE---GQPIQHPMLSKLIENIQKKVEG 632 (822)
T ss_dssp HHHHHTTSSCSSCCCEEEEEEETTSHHHHHTTHHHHHHHHHHSSCCS---SSCBCCHHHHHHHHHHHHHHHH
T ss_pred HHHhhCccccCCCCeeEEEEechhHHHHHhhhHHHHHHHHHHcCCCC---CceeccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998773 23444444444321 1122334555555555555544
No 44
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.89 E-value=8.3e-23 Score=216.73 Aligned_cols=198 Identities=21% Similarity=0.271 Sum_probs=140.8
Q ss_pred CCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEE------------EEEc
Q 016983 2 LAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLY------------AIST 69 (379)
Q Consensus 2 L~~GF~~di~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~------------~~~~ 69 (379)
.+.+|...++.++..++ +.|++++|||+|. ..++++++ ..+ .+..... . ..+... ....
T Consensus 158 ~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~~l-~~~-~~~~~~r---~--~~l~~~~~~~~~~~~~~~~~~~ 228 (715)
T 2va8_A 158 NDPERGPVVESVTIRAK-RRNLLALSATISN-YKQIAKWL-GAE-PVATNWR---P--VPLIEGVIYPERKKKEYNVIFK 228 (715)
T ss_dssp GCTTTHHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHHHH-TCE-EEECCCC---S--SCEEEEEEEECSSTTEEEEEET
T ss_pred CCcccchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHHHh-CCC-ccCCCCC---C--CCceEEEEecCCcccceeeecC
Confidence 35578888999998887 8999999999975 46666644 322 1211100 0 001111 1111
Q ss_pred C--------CccHHHHHHHHHHHHcCCCcEEEEecccccHHHHHHHHhcC------------------------------
Q 016983 70 T--------ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI------------------------------ 111 (379)
Q Consensus 70 ~--------~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~~------------------------------ 111 (379)
. ...+.. .+.+...+++++||||+++++++.++..|...
T Consensus 229 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 305 (715)
T 2va8_A 229 DNTTKKVHGDDAIIA---YTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKE 305 (715)
T ss_dssp TSCEEEEESSSHHHH---HHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHH
T ss_pred cchhhhcccchHHHH---HHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccH
Confidence 1 122333 33333456789999999999999999998742
Q ss_pred -------CcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEEe----cC-------CCCChhHHHH
Q 016983 112 -------IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YE-------LPNDPETFVH 173 (379)
Q Consensus 112 -------~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~----~~-------~P~~~~~yiq 173 (379)
..+..+||+|++.+|..+++.|++|..+|||||+++++|+|+|++++||+ || .|.+..+|+|
T Consensus 306 ~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Q 385 (715)
T 2va8_A 306 LLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQ 385 (715)
T ss_dssp HHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHH
T ss_pred HHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHH
Confidence 24899999999999999999999999999999999999999999999999 99 8999999999
Q ss_pred HHhhccCCC--CCceEEEEeChhhHHHHHHHHHHhCCCcee
Q 016983 174 RSGRTGRAG--KEGTAILMFTSSQRRTVRSLERDVGCKFEF 212 (379)
Q Consensus 174 R~GRtgR~G--~~g~~i~l~~~~e~~~l~~le~~~~~~~~~ 212 (379)
|+||+||.| ..|.|++++++.+. ....+++++...++.
T Consensus 386 r~GRaGR~g~~~~G~~~~l~~~~~~-~~~~~~~~l~~~~e~ 425 (715)
T 2va8_A 386 MSGRAGRPGFDQIGESIVVVRDKED-VDRVFKKYVLSDVEP 425 (715)
T ss_dssp HHTTBCCTTTCSCEEEEEECSCGGG-HHHHHHHTTSSCCCC
T ss_pred HhhhcCCCCCCCCceEEEEeCCchH-HHHHHHHHHcCCCCC
Confidence 999999998 57999999987663 222344444444443
No 45
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.89 E-value=1e-24 Score=230.19 Aligned_cols=129 Identities=22% Similarity=0.364 Sum_probs=82.7
Q ss_pred ccHHHHHHHHHHHH---cCCCcEEEEecccccHHHHHHHHhc-C----CcEEEe--------eCCCCHHHHHHHHhcccC
Q 016983 72 TSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-I----IASEAL--------HGDISQHQRERTLNGFRQ 135 (379)
Q Consensus 72 ~~k~~~L~~ll~~~---~~~~~~IIF~~t~~~~~~l~~~L~~-~----~~v~~l--------hg~m~~~~R~~~~~~F~~ 135 (379)
..|...|..++... .++.++||||+++..++.++..|.. + +.+..+ ||+|++++|.+++++|++
T Consensus 379 ~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~ 458 (696)
T 2ykg_A 379 NPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKA 458 (696)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC---------------------------
T ss_pred CHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHh
Confidence 46778888888765 3467999999999999999999985 4 788888 559999999999999998
Q ss_pred -CceeEEEeccccccCCCCCccceEEecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHH
Q 016983 136 -GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 202 (379)
Q Consensus 136 -g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~l 202 (379)
|+.+|||||+++++|||+|++++||+||+|.++++|+||+|| ||. +.|.+++++++.+......+
T Consensus 459 ~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 459 SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp --CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHH
T ss_pred cCCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999 998 78999999998877555544
No 46
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.89 E-value=1.6e-22 Score=212.79 Aligned_cols=174 Identities=21% Similarity=0.316 Sum_probs=132.2
Q ss_pred CCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHH-HHHHHHHHHcCCCcEEEEecc
Q 016983 19 PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT-ILSDLITVYAKGGKTIVFTQT 97 (379)
Q Consensus 19 ~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~-~L~~ll~~~~~~~~~IIF~~t 97 (379)
...|+++||||++...... . ...+........ .... ...+. +...+.. ++..+......+.++||||+|
T Consensus 379 ~~~q~i~~SAT~~~~~~~~----~--~~~~~~~~r~~~-l~~p--~i~v~-~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t 448 (664)
T 1c4o_A 379 RVSQVVFVSATPGPFELAH----S--GRVVEQIIRPTG-LLDP--LVRVK-PTENQILDLMEGIRERAARGERTLVTVLT 448 (664)
T ss_dssp TCSEEEEEESSCCHHHHHH----C--SEEEEECSCTTC-CCCC--EEEEE-CSTTHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred hcCCEEEEecCCCHHHHHh----h--hCeeeeeeccCC-CCCC--eEEEe-cccchHHHHHHHHHHHHhcCCEEEEEECC
Confidence 4679999999998754222 1 112222111111 1111 11222 2233443 344444444457899999999
Q ss_pred cccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEEecCC-----CCChhHH
Q 016983 98 KRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL-----PNDPETF 171 (379)
Q Consensus 98 ~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~-----P~~~~~y 171 (379)
+..++.++..|.. ++.+..+||+|++.+|..++++|++|+++|||||+++++|+|+|++++||++|. |.+..+|
T Consensus 449 ~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~ 528 (664)
T 1c4o_A 449 VRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSL 528 (664)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHH
T ss_pred HHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHH
Confidence 9999999999985 889999999999999999999999999999999999999999999999999997 8999999
Q ss_pred HHHHhhccCCCCCceEEEEeChhhHHHHHHHH
Q 016983 172 VHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 203 (379)
Q Consensus 172 iqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le 203 (379)
+||+|||||.| .|.+++++++.+....+.++
T Consensus 529 iQr~GRagR~~-~G~~i~~~~~~~~~~~~~i~ 559 (664)
T 1c4o_A 529 IQTIGRAARNA-RGEVWLYADRVSEAMQRAIE 559 (664)
T ss_dssp HHHHGGGTTST-TCEEEEECSSCCHHHHHHHH
T ss_pred HHHHCccCcCC-CCEEEEEEcCCCHHHHHHHH
Confidence 99999999995 89999999987765555544
No 47
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.89 E-value=4.5e-24 Score=224.44 Aligned_cols=175 Identities=14% Similarity=0.182 Sum_probs=131.4
Q ss_pred hHHHHHHHHHhCC-CCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHHHHHHH
Q 016983 6 FEEDVELILENLP-PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 84 (379)
Q Consensus 6 F~~di~~Il~~~p-~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~ 84 (379)
+..++..+...++ .+.|+++||||+|+.+..+... ++....+.. ..+.......+..+.
T Consensus 348 ~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~---~~~i~~v~~---------------~~~~~~~~~~l~~l~-- 407 (673)
T 2wv9_A 348 SIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT---NSPVHDVSS---------------EIPDRAWSSGFEWIT-- 407 (673)
T ss_dssp HHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC---SSCEEEEEC---------------CCCSSCCSSCCHHHH--
T ss_pred HHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc---CCceEEEee---------------ecCHHHHHHHHHHHH--
Confidence 3344555555543 6899999999998765433211 111111110 011111112222222
Q ss_pred HcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEEe--
Q 016983 85 YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH-- 161 (379)
Q Consensus 85 ~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~-- 161 (379)
..++++||||++++.++.++..|.. ++.+..+||+ +|+++++.|++|+.+|||||+++++|+|+| +++|||
T Consensus 408 -~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g 481 (673)
T 2wv9_A 408 -DYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCR 481 (673)
T ss_dssp -SCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECC
T ss_pred -hCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECC
Confidence 2468999999999999999999986 7899999994 799999999999999999999999999999 999998
Q ss_pred ------------------cCCCCChhHHHHHHhhccCC-CCCceEEEEe---ChhhHHHHHHHHHHh
Q 016983 162 ------------------YELPNDPETFVHRSGRTGRA-GKEGTAILMF---TSSQRRTVRSLERDV 206 (379)
Q Consensus 162 ------------------~~~P~~~~~yiqR~GRtgR~-G~~g~~i~l~---~~~e~~~l~~le~~~ 206 (379)
|++|.+.++|+||+||+||. |+.|.|++|+ ++.+...++.+|...
T Consensus 482 ~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 482 KSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp EECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred CcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 67899999999999999999 7899999996 577777777777654
No 48
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.88 E-value=3.2e-23 Score=208.86 Aligned_cols=164 Identities=18% Similarity=0.217 Sum_probs=123.1
Q ss_pred CChHHHHHHHHHh-CCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHHHHH
Q 016983 4 VGFEEDVELILEN-LPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 82 (379)
Q Consensus 4 ~GF~~di~~Il~~-~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll 82 (379)
+++...+..+... .+++.|+++||||+|..+..+ +..++..+..... .+. ..+ ... ...+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~----~p~--~~~------~~~----~~~l 184 (451)
T 2jlq_A 124 PCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPF---PQSNSPIEDIERE----IPE--RSW------NTG----FDWI 184 (451)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSS---CCCSSCEEEEECC----CCS--SCC------SSS----CHHH
T ss_pred cchHHHHHHHHHhhcCCCceEEEEccCCCccchhh---hcCCCceEecCcc----CCc--hhh------HHH----HHHH
Confidence 3444444444432 356899999999998865432 2344554443211 010 000 111 1223
Q ss_pred HHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEEe
Q 016983 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (379)
Q Consensus 83 ~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~ 161 (379)
.. ..+++||||+|++.++.++..|.. ++.+..+||++. +++++.|++|+.+||||||++++|+|+|+ ++|||
T Consensus 185 ~~--~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~ 257 (451)
T 2jlq_A 185 TD--YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVID 257 (451)
T ss_dssp HH--CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEE
T ss_pred Hh--CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEE
Confidence 22 357999999999999999999985 889999999864 57999999999999999999999999999 99999
Q ss_pred cC--------------------CCCChhHHHHHHhhccCCCC-CceEEEEeCh
Q 016983 162 YE--------------------LPNDPETFVHRSGRTGRAGK-EGTAILMFTS 193 (379)
Q Consensus 162 ~~--------------------~P~~~~~yiqR~GRtgR~G~-~g~~i~l~~~ 193 (379)
|| .|.+.++|+||+|||||.|+ .|.|++++..
T Consensus 258 ~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 258 PRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp CCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred CCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99 99999999999999999997 8999888754
No 49
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.88 E-value=1.9e-22 Score=201.01 Aligned_cols=123 Identities=33% Similarity=0.545 Sum_probs=110.0
Q ss_pred ccHHHHHHHHHHHH---cCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeC--------CCCHHHHHHHHhcccCCcee
Q 016983 72 TSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHG--------DISQHQRERTLNGFRQGKFT 139 (379)
Q Consensus 72 ~~k~~~L~~ll~~~---~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg--------~m~~~~R~~~~~~F~~g~~~ 139 (379)
..|...|.+++... .++.++||||+++..++.++..|.. ++.+..+|| +|++.+|..++++|++|..+
T Consensus 342 ~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~ 421 (494)
T 1wp9_A 342 HPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFN 421 (494)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCS
T ss_pred ChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCce
Confidence 34666677777654 4578999999999999999999985 899999999 99999999999999999999
Q ss_pred EEEeccccccCCCCCccceEEecCCCCChhHHHHHHhhccCCCCCceEEEEeChhh
Q 016983 140 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (379)
Q Consensus 140 iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e 195 (379)
|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|. |.++.++++.+
T Consensus 422 vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t 476 (494)
T 1wp9_A 422 VLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGT 476 (494)
T ss_dssp EEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTS
T ss_pred EEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCC
Confidence 99999999999999999999999999999999999999999997 99999998764
No 50
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.88 E-value=2.5e-24 Score=217.42 Aligned_cols=151 Identities=18% Similarity=0.294 Sum_probs=114.4
Q ss_pred CCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHHHHHHHHcCCCcEEEEecc
Q 016983 18 PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQT 97 (379)
Q Consensus 18 p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t 97 (379)
+++.|+++||||+|..+..+... ..|... +.. ..+. ....... .++.. .++++||||+|
T Consensus 141 ~~~~~~il~SAT~~~~~~~~~~~--~~pi~~-~~~----~~~~--------~~~~~~~----~~l~~--~~~~~LVF~~s 199 (459)
T 2z83_A 141 LGEAAAIFMTATPPGTTDPFPDS--NAPIHD-LQD----EIPD--------RAWSSGY----EWITE--YAGKTVWFVAS 199 (459)
T ss_dssp TTSCEEEEECSSCTTCCCSSCCC--SSCEEE-EEC----CCCS--------SCCSSCC----HHHHH--CCSCEEEECSC
T ss_pred cCCccEEEEEcCCCcchhhhccC--CCCeEE-ecc----cCCc--------chhHHHH----HHHHh--cCCCEEEEeCC
Confidence 36899999999999765433211 223221 110 0000 0001111 22332 36899999999
Q ss_pred cccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEEe---------------
Q 016983 98 KRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH--------------- 161 (379)
Q Consensus 98 ~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~--------------- 161 (379)
++.++.++..|.. ++.+..+||+ +|+.+++.|++|+.+||||||++++|+|+|+ ++|||
T Consensus 200 ~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~ 274 (459)
T 2z83_A 200 VKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEG 274 (459)
T ss_dssp HHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSC
T ss_pred hHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCccccccccccccc
Confidence 9999999999985 8999999995 6889999999999999999999999999999 99999
Q ss_pred -----cCCCCChhHHHHHHhhccCCCC-CceEEEEeChh
Q 016983 162 -----YELPNDPETFVHRSGRTGRAGK-EGTAILMFTSS 194 (379)
Q Consensus 162 -----~~~P~~~~~yiqR~GRtgR~G~-~g~~i~l~~~~ 194 (379)
|+.|.+.++|+||+|||||.|+ .|.|++|+++.
T Consensus 275 ~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 275 RVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp EEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred ccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 7799999999999999999997 99999999875
No 51
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.88 E-value=4.3e-22 Score=220.63 Aligned_cols=179 Identities=17% Similarity=0.234 Sum_probs=146.0
Q ss_pred HHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHHHHHHHHcCC
Q 016983 9 DVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG 88 (379)
Q Consensus 9 di~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~ 88 (379)
+...++..++.+.|+++||||+++....++...+.++..+... . .....+..++... .+......++.....+
T Consensus 740 ~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~---~-~~r~~i~~~~~~~---~~~~i~~~il~~l~~g 812 (1151)
T 2eyq_A 740 RHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATP---P-ARRLAVKTFVREY---DSMVVREAILREILRG 812 (1151)
T ss_dssp HHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCC---C-CBCBCEEEEEEEC---CHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecC---C-CCccccEEEEecC---CHHHHHHHHHHHHhcC
Confidence 4566777777889999999999888877776666655444221 1 1122344443332 3445555666666668
Q ss_pred CcEEEEecccccHHHHHHHHhc---CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEEecCC-
Q 016983 89 GKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL- 164 (379)
Q Consensus 89 ~~~IIF~~t~~~~~~l~~~L~~---~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~- 164 (379)
++++||||+++.++.++..|.. +..+..+||+|++.+|++++++|++|+.+|||||+++++|+|+|++++||+++.
T Consensus 813 ~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~ 892 (1151)
T 2eyq_A 813 GQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERAD 892 (1151)
T ss_dssp CEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTT
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCC
Confidence 9999999999999999999975 578999999999999999999999999999999999999999999999999988
Q ss_pred CCChhHHHHHHhhccCCCCCceEEEEeChh
Q 016983 165 PNDPETFVHRSGRTGRAGKEGTAILMFTSS 194 (379)
Q Consensus 165 P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~ 194 (379)
+.+...|+||+||+||.|+.|.|++++.+.
T Consensus 893 ~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 893 HFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp SSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred CCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 568999999999999999999999999764
No 52
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.88 E-value=6e-23 Score=209.57 Aligned_cols=128 Identities=24% Similarity=0.357 Sum_probs=90.1
Q ss_pred cHHHHHHHHHHHH---cCCCcEEEEecccccHHHHHHHHhc-C----Cc--------EEEeeCCCCHHHHHHHHhcccC-
Q 016983 73 SKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-I----IA--------SEALHGDISQHQRERTLNGFRQ- 135 (379)
Q Consensus 73 ~k~~~L~~ll~~~---~~~~~~IIF~~t~~~~~~l~~~L~~-~----~~--------v~~lhg~m~~~~R~~~~~~F~~- 135 (379)
.|...|..++... .++.++||||+++..++.++..|.. + +. ...+||+|++.+|.+++++|++
T Consensus 371 ~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~ 450 (555)
T 3tbk_A 371 PKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRAS 450 (555)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC-------------------------
T ss_pred HHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcC
Confidence 4566666666543 3468999999999999999999974 2 33 4455679999999999999999
Q ss_pred CceeEEEeccccccCCCCCccceEEecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHH
Q 016983 136 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 202 (379)
Q Consensus 136 g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~l 202 (379)
|+++|||||+++++|+|+|++++|||||+|+++..|+||+|| ||. +.|.+++|+++.+......+
T Consensus 451 g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 451 GDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp -CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred CCeeEEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999 999 89999999998876555444
No 53
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.88 E-value=7.3e-22 Score=215.92 Aligned_cols=127 Identities=24% Similarity=0.302 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHcCCCcEEEEecccccHHHHHHHHhc-CC---------------------------------------cE
Q 016983 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-II---------------------------------------AS 114 (379)
Q Consensus 75 ~~~L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~---------------------------------------~v 114 (379)
...+...+... ...++||||+|++.|+.++..|.. ++ .+
T Consensus 324 ~~~li~~l~~~-~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi 402 (997)
T 4a4z_A 324 WPEIVNYLRKR-ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGI 402 (997)
T ss_dssp HHHHHHHHHHT-TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTE
T ss_pred HHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCe
Confidence 44444455443 357999999999999999998864 33 47
Q ss_pred EEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEE--------ecCCCCChhHHHHHHhhccCCC--CC
Q 016983 115 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII--------HYELPNDPETFVHRSGRTGRAG--KE 184 (379)
Q Consensus 115 ~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI--------~~~~P~~~~~yiqR~GRtgR~G--~~ 184 (379)
..+||+|++.+|+.+++.|++|.++|||||+++++|+|+|++.+|+ +++.|.++.+|+||+|||||.| ..
T Consensus 403 ~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~ 482 (997)
T 4a4z_A 403 AVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDST 482 (997)
T ss_dssp EEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCSEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSS
T ss_pred eeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcc
Confidence 8999999999999999999999999999999999999999955555 2334449999999999999998 67
Q ss_pred ceEEEEeC--hhhHHHHHHH
Q 016983 185 GTAILMFT--SSQRRTVRSL 202 (379)
Q Consensus 185 g~~i~l~~--~~e~~~l~~l 202 (379)
|.|++++. +.+...++.+
T Consensus 483 G~vi~l~~~~~~~~~~~~~~ 502 (997)
T 4a4z_A 483 GTVIVMAYNSPLSIATFKEV 502 (997)
T ss_dssp EEEEEECCSSCCCHHHHHHH
T ss_pred eEEEEecCCCcchHHHHHHH
Confidence 88888883 3455555555
No 54
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.87 E-value=2.5e-21 Score=207.84 Aligned_cols=123 Identities=20% Similarity=0.333 Sum_probs=72.4
Q ss_pred cHHHHHHHHHHHH---cCCCcEEEEecccccHHHHHHHHhc-------------CCcEEEeeCCCCHHHHHHHHhcccC-
Q 016983 73 SKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-------------IIASEALHGDISQHQRERTLNGFRQ- 135 (379)
Q Consensus 73 ~k~~~L~~ll~~~---~~~~~~IIF~~t~~~~~~l~~~L~~-------------~~~v~~lhg~m~~~~R~~~~~~F~~- 135 (379)
.|...|..++... .++.++||||++++.++.++..|.. +..+..+||+|++.+|..++++|++
T Consensus 613 ~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~ 692 (797)
T 4a2q_A 613 PKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTS 692 (797)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC---------------------------
T ss_pred hHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhcc
Confidence 3556666666542 4568999999999999999999964 2355677999999999999999999
Q ss_pred CceeEEEeccccccCCCCCccceEEecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHH
Q 016983 136 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRR 197 (379)
Q Consensus 136 g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~ 197 (379)
|.++|||||+++++|||+|++++||+||+|.++..|+||+|| ||. +.|.+++|+++.+..
T Consensus 693 g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 693 KDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (797)
T ss_dssp -CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHHH
T ss_pred CCceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHH
Confidence 999999999999999999999999999999999999999999 999 799999999987653
No 55
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.86 E-value=3.1e-21 Score=210.76 Aligned_cols=166 Identities=17% Similarity=0.252 Sum_probs=144.1
Q ss_pred CCccHHHHHHHHHHHHcCCCcEEEEecccccHHHHHHHHhc--CCcEEEeeCCCCHHHHHHHHhcccCCc--eeEEEecc
Q 016983 70 TATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQGK--FTVLVATD 145 (379)
Q Consensus 70 ~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~--~~~v~~lhg~m~~~~R~~~~~~F~~g~--~~iLVaTd 145 (379)
....|...|..++... ++.++||||+++..++.++..|.. ++.+..+||+|++.+|+.++++|++|+ ++|||||+
T Consensus 486 ~~~~K~~~L~~ll~~~-~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~ 564 (968)
T 3dmq_A 486 NFDPRVEWLMGYLTSH-RSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSE 564 (968)
T ss_dssp TTSHHHHHHHHHHHHT-SSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSC
T ss_pred CccHHHHHHHHHHHhC-CCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecc
Confidence 3456888999988874 578999999999999999999983 899999999999999999999999998 99999999
Q ss_pred ccccCCCCCccceEEecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHh--CCCceeeCCCCHHHHHH
Q 016983 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV--GCKFEFVSPPVVEDVLE 223 (379)
Q Consensus 146 v~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~--~~~~~~~~~p~~~~i~~ 223 (379)
++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++++...+....+.+.+.. +.++.....|..+++.+
T Consensus 565 v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~~~~~~~~~~i~~ 644 (968)
T 3dmq_A 565 IGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYD 644 (968)
T ss_dssp CTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCSSSCCSSHHHHHH
T ss_pred hhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHHhCCCceecCCCCHHHHHH
Confidence 9999999999999999999999999999999999999999777775544444445555555 56666678899999999
Q ss_pred HHHHHHHHHHccc
Q 016983 224 SSAEQVVATLNGV 236 (379)
Q Consensus 224 ~~~~~~~~~l~~~ 236 (379)
...+.+...+...
T Consensus 645 ~~~~~l~~~l~~~ 657 (968)
T 3dmq_A 645 SVYNDLINYLASP 657 (968)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhcc
Confidence 8888888877654
No 56
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.86 E-value=2.7e-21 Score=203.07 Aligned_cols=191 Identities=17% Similarity=0.164 Sum_probs=142.3
Q ss_pred CCCCChHHHHHHHHHhCC-CCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHH
Q 016983 1 MLAVGFEEDVELILENLP-PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILS 79 (379)
Q Consensus 1 mL~~GF~~di~~Il~~~p-~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~ 79 (379)
|++++|..+++.++..++ .+.|++++|||. +.+..++... ..+..+... ... ..... .... +
T Consensus 251 l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~-~~i~~l~~~~-~~~~~v~~~---~r~--~~l~~---~~~~------l- 313 (677)
T 3rc3_A 251 IRDPARGWAWTRALLGLCAEEVHLCGEPAAI-DLVMELMYTT-GEEVEVRDY---KRL--TPISV---LDHA------L- 313 (677)
T ss_dssp GGCTTTHHHHHHHHHHCCEEEEEEEECGGGH-HHHHHHHHHH-TCCEEEEEC---CCS--SCEEE---CSSC------C-
T ss_pred cCCccchHHHHHHHHccCccceEEEeccchH-HHHHHHHHhc-CCceEEEEe---eec--chHHH---HHHH------H-
Confidence 578899999999999998 788999999995 3456665543 333333211 000 11110 0000 0
Q ss_pred HHHHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccC--CceeEEEeccccccCCCCCcc
Q 016983 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQ--GKFTVLVATDVAARGLDIPNV 156 (379)
Q Consensus 80 ~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~--g~~~iLVaTdv~~rGiDip~v 156 (379)
..+.. .....||||+|+++++.++..|.. ++.+..+||+|++++|+.+++.|++ |..+|||||+++++|+|+ ++
T Consensus 314 ~~l~~--~~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v 390 (677)
T 3rc3_A 314 ESLDN--LRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SI 390 (677)
T ss_dssp CSGGG--CCTTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CB
T ss_pred HHHHh--cCCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-Cc
Confidence 01111 134568999999999999999985 7899999999999999999999999 889999999999999999 89
Q ss_pred ceEEecCC--------------CCChhHHHHHHhhccCCCCC---ceEEEEeChhhHHHHHHHHHHhCCCcee
Q 016983 157 DLIIHYEL--------------PNDPETFVHRSGRTGRAGKE---GTAILMFTSSQRRTVRSLERDVGCKFEF 212 (379)
Q Consensus 157 ~~VI~~~~--------------P~~~~~yiqR~GRtgR~G~~---g~~i~l~~~~e~~~l~~le~~~~~~~~~ 212 (379)
++||++++ |.+..+|+||+|||||.|.. |.|+.++. .+...++.+.......++.
T Consensus 391 ~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~-~d~~~~~~~~~~~~~~i~~ 462 (677)
T 3rc3_A 391 RRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNH-EDLSLLKEILKRPVDPIRA 462 (677)
T ss_dssp SEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESST-THHHHHHHHHHSCCCCCCC
T ss_pred cEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEec-chHHHHHHHHhcCcchhhh
Confidence 99999999 88999999999999999964 66666554 4555666666655555544
No 57
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.85 E-value=1.3e-21 Score=206.42 Aligned_cols=103 Identities=28% Similarity=0.518 Sum_probs=89.0
Q ss_pred CCcEEEEecccccHHHHHHHHhc-------CCcEEEeeCC--------CCHHHHHHHHhcccCCceeEEEeccccccCCC
Q 016983 88 GGKTIVFTQTKRDADEVSLALTS-------IIASEALHGD--------ISQHQRERTLNGFRQGKFTVLVATDVAARGLD 152 (379)
Q Consensus 88 ~~~~IIF~~t~~~~~~l~~~L~~-------~~~v~~lhg~--------m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiD 152 (379)
+.++||||++++.++.++..|.. ++.+..+||+ |++.+|.+++++|++|+.+|||||+++++|||
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GID 479 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLD 479 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCc
Confidence 68999999999999999999985 5889999999 99999999999999999999999999999999
Q ss_pred CCccceEEecCCCCChhHHHHHHhhccCCCCCceEEEEeCh
Q 016983 153 IPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTS 193 (379)
Q Consensus 153 ip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~ 193 (379)
+|++++|||||+|.++.+|+||+||+||.| .+++++.+
T Consensus 480 ip~v~~VI~~d~p~s~~~~~Qr~GRArr~g---~~~~l~~~ 517 (699)
T 4gl2_A 480 IKECNIVIRYGLVTNEIAMVQARGRARADE---STYVLVAH 517 (699)
T ss_dssp CCSCCCCEEESCCCCHHHHHHHHTTSCSSS---CEEEEEEE
T ss_pred cccCCEEEEeCCCCCHHHHHHHcCCCCCCC---ceEEEEEe
Confidence 999999999999999999999999976654 45555443
No 58
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.85 E-value=8.6e-22 Score=209.76 Aligned_cols=179 Identities=17% Similarity=0.299 Sum_probs=129.1
Q ss_pred CCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHHHHHHHHcCCCcEEEEecc
Q 016983 18 PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQT 97 (379)
Q Consensus 18 p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t 97 (379)
..+.|+++||||+++....+. +..+.. +.+..... .....+..++ .+......++..+.+....+.+++|||++
T Consensus 514 ~~~~~vL~mSATp~p~tl~~~--~~g~~~-~s~i~~~p-~~r~~i~~~~--~~~~~~~~l~~~i~~~l~~g~qvlVf~~~ 587 (780)
T 1gm5_A 514 GKMVDTLVMSATPIPRSMALA--FYGDLD-VTVIDEMP-PGRKEVQTML--VPMDRVNEVYEFVRQEVMRGGQAFIVYPL 587 (780)
T ss_dssp SSCCCEEEEESSCCCHHHHHH--HTCCSS-CEEECCCC-SSCCCCEECC--CCSSTHHHHHHHHHHHTTTSCCBCCBCCC
T ss_pred CCCCCEEEEeCCCCHHHHHHH--HhCCcc-eeeeeccC-CCCcceEEEE--eccchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 357899999999877655544 333322 11111111 1112233222 22233444444444455567899999997
Q ss_pred cc--------cHHHHHHHHhc----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEEecCCC
Q 016983 98 KR--------DADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELP 165 (379)
Q Consensus 98 ~~--------~~~~l~~~L~~----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P 165 (379)
.+ .++.+++.|.. ++.+..+||+|++.+|+.++++|++|+.+|||||+++++|+|+|++++||+++.|
T Consensus 588 ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~ 667 (780)
T 1gm5_A 588 IEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPE 667 (780)
T ss_dssp C--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCS
T ss_pred hhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCC
Confidence 64 46778888876 4679999999999999999999999999999999999999999999999999999
Q ss_pred C-ChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHH
Q 016983 166 N-DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 202 (379)
Q Consensus 166 ~-~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~l 202 (379)
. +...|.||+||+||.|+.|.|++++++.+....+.+
T Consensus 668 r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~~~~rl 705 (780)
T 1gm5_A 668 RFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMERL 705 (780)
T ss_dssp SSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHHHHH
T ss_pred CCCHHHHHHHhcccCcCCCCCEEEEEECCCChHHHHHH
Confidence 6 788999999999999999999999985443333333
No 59
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.84 E-value=1.4e-21 Score=195.81 Aligned_cols=162 Identities=17% Similarity=0.190 Sum_probs=116.8
Q ss_pred CChHHHHHHHHHhC-CCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHHHHH
Q 016983 4 VGFEEDVELILENL-PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 82 (379)
Q Consensus 4 ~GF~~di~~Il~~~-p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll 82 (379)
++|......+.... +.+.|+++||||+|+.+..+.. .++..+.+.. ..+... ...+...+
T Consensus 107 ~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~~~---~~~~i~~~~~---------------~~~~~~-~~~~~~~l 167 (431)
T 2v6i_A 107 PASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFPP---SNSPIIDEET---------------RIPDKA-WNSGYEWI 167 (431)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSCC---CSSCCEEEEC---------------CCCSSC-CSSCCHHH
T ss_pred ccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhhcC---CCCceeeccc---------------cCCHHH-HHHHHHHH
Confidence 34555555555543 5689999999999875332221 0111111110 011111 11112233
Q ss_pred HHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccce---
Q 016983 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL--- 158 (379)
Q Consensus 83 ~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~--- 158 (379)
.. .++++||||++++.++.+++.|.. ++.+..+||+ +|++++++|++|+.+|||||+++++|+|+| +.+
T Consensus 168 ~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~ 240 (431)
T 2v6i_A 168 TE--FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVID 240 (431)
T ss_dssp HS--CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEE
T ss_pred Hc--CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEe
Confidence 32 357999999999999999999985 7899999998 578899999999999999999999999999 654
Q ss_pred --------------EEecCCCCChhHHHHHHhhccCCCC-CceEEEEe
Q 016983 159 --------------IIHYELPNDPETFVHRSGRTGRAGK-EGTAILMF 191 (379)
Q Consensus 159 --------------VI~~~~P~~~~~yiqR~GRtgR~G~-~g~~i~l~ 191 (379)
||+++.|.+.++|+||+||+||.|. .|.++++.
T Consensus 241 ~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 241 PRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp CCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred cCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 6788999999999999999999984 55656655
No 60
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.84 E-value=2.4e-20 Score=203.29 Aligned_cols=123 Identities=20% Similarity=0.333 Sum_probs=72.4
Q ss_pred cHHHHHHHHHHHH---cCCCcEEEEecccccHHHHHHHHhc-------------CCcEEEeeCCCCHHHHHHHHhcccC-
Q 016983 73 SKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-------------IIASEALHGDISQHQRERTLNGFRQ- 135 (379)
Q Consensus 73 ~k~~~L~~ll~~~---~~~~~~IIF~~t~~~~~~l~~~L~~-------------~~~v~~lhg~m~~~~R~~~~~~F~~- 135 (379)
.|...|..++... .++.++||||++++.++.++..|.. +..+..+||+|++.+|..++++|++
T Consensus 613 ~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~ 692 (936)
T 4a2w_A 613 PKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTS 692 (936)
T ss_dssp HHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC---------------------------
T ss_pred HHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhcc
Confidence 3555555666543 3468999999999999999999974 2345567999999999999999999
Q ss_pred CceeEEEeccccccCCCCCccceEEecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHH
Q 016983 136 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRR 197 (379)
Q Consensus 136 g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~ 197 (379)
|+++|||||+++++|||+|++++||+||+|.++..|+||+|| ||. +.|.++++++..+..
T Consensus 693 g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 693 KDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (936)
T ss_dssp -CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHHH
T ss_pred CCeeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHH
Confidence 999999999999999999999999999999999999999999 999 789999999886543
No 61
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.84 E-value=3.1e-20 Score=211.88 Aligned_cols=186 Identities=14% Similarity=0.164 Sum_probs=139.1
Q ss_pred HHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHH-------HHHHHHHHHHc
Q 016983 14 LENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKR-------TILSDLITVYA 86 (379)
Q Consensus 14 l~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~-------~~L~~ll~~~~ 86 (379)
...++++.|++++|||+|. ..+++++.-.++..+....... .+..++.+....+..... ..+...+..+.
T Consensus 1077 ~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~~--RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~ 1153 (1724)
T 4f92_B 1077 SSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPNV--RPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHS 1153 (1724)
T ss_dssp HHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGGG--CSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHC
T ss_pred HhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCC--CCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhc
Confidence 3456789999999999985 6778876654443332222111 123344443333322221 12334455556
Q ss_pred CCCcEEEEecccccHHHHHHHHhc-----------------------------------CCcEEEeeCCCCHHHHHHHHh
Q 016983 87 KGGKTIVFTQTKRDADEVSLALTS-----------------------------------IIASEALHGDISQHQRERTLN 131 (379)
Q Consensus 87 ~~~~~IIF~~t~~~~~~l~~~L~~-----------------------------------~~~v~~lhg~m~~~~R~~~~~ 131 (379)
+++++||||+|++.|+.++..|.. ...+.++||+|++.+|..+.+
T Consensus 1154 ~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~ 1233 (1724)
T 4f92_B 1154 PKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQ 1233 (1724)
T ss_dssp SSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHH
T ss_pred CCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHH
Confidence 678999999999999988876531 125789999999999999999
Q ss_pred cccCCceeEEEeccccccCCCCCccceEEe----------cCCCCChhHHHHHHhhccCCCC--CceEEEEeChhhHHHH
Q 016983 132 GFRQGKFTVLVATDVAARGLDIPNVDLIIH----------YELPNDPETFVHRSGRTGRAGK--EGTAILMFTSSQRRTV 199 (379)
Q Consensus 132 ~F~~g~~~iLVaTdv~~rGiDip~v~~VI~----------~~~P~~~~~yiqR~GRtgR~G~--~g~~i~l~~~~e~~~l 199 (379)
.|++|.++|||||+++++|+|+|...+||. ...|.++.+|+||+|||||+|. .|.|++++.+.+...+
T Consensus 1234 lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~ 1313 (1724)
T 4f92_B 1234 LFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFF 1313 (1724)
T ss_dssp HHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHH
T ss_pred HHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHH
Confidence 999999999999999999999999999993 3357899999999999999995 7999999999888777
Q ss_pred HHH
Q 016983 200 RSL 202 (379)
Q Consensus 200 ~~l 202 (379)
+.+
T Consensus 1314 ~~l 1316 (1724)
T 4f92_B 1314 KKF 1316 (1724)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 62
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.81 E-value=7.7e-20 Score=208.59 Aligned_cols=184 Identities=19% Similarity=0.262 Sum_probs=134.7
Q ss_pred hCCCCCcEEEEeeeCChHHHHHHHHhcCCCc-eEEeecccccccccceEEEEEEcCCccH---HHHHH----HHHHHHcC
Q 016983 16 NLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSK---RTILS----DLITVYAK 87 (379)
Q Consensus 16 ~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~-~i~~~~~~~~~~~~~i~~~~~~~~~~~k---~~~L~----~ll~~~~~ 87 (379)
.++++.|++++|||+|+ ..+++++.-.++. .+.+..... .+..++++++....... ...+. ..+.....
T Consensus 240 ~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~~--RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 316 (1724)
T 4f92_B 240 MTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNSF--RPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAG 316 (1724)
T ss_dssp HHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGGG--CSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCS
T ss_pred hCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCCC--ccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhc
Confidence 45788999999999985 6777765433332 222222111 12345555544443322 22222 22222234
Q ss_pred CCcEEEEecccccHHHHHHHHhc--------------------------------------CCcEEEeeCCCCHHHHHHH
Q 016983 88 GGKTIVFTQTKRDADEVSLALTS--------------------------------------IIASEALHGDISQHQRERT 129 (379)
Q Consensus 88 ~~~~IIF~~t~~~~~~l~~~L~~--------------------------------------~~~v~~lhg~m~~~~R~~~ 129 (379)
++++||||+|++.|+.++..|.. ...+.++||+|++.+|..+
T Consensus 317 ~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~v 396 (1724)
T 4f92_B 317 KNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLV 396 (1724)
T ss_dssp SCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHH
T ss_pred CCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHH
Confidence 67999999999999999887742 0247899999999999999
Q ss_pred HhcccCCceeEEEeccccccCCCCCccceEEe----cC------CCCChhHHHHHHhhccCCC--CCceEEEEeChhhHH
Q 016983 130 LNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YE------LPNDPETFVHRSGRTGRAG--KEGTAILMFTSSQRR 197 (379)
Q Consensus 130 ~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~----~~------~P~~~~~yiqR~GRtgR~G--~~g~~i~l~~~~e~~ 197 (379)
.+.|++|.++|||||+++++|||+|.+++||. |+ .|.++.+|.||+|||||+| ..|.++++.++.+..
T Consensus 397 E~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~ 476 (1724)
T 4f92_B 397 EDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQ 476 (1724)
T ss_dssp HHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCC
T ss_pred HHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHH
Confidence 99999999999999999999999999999995 44 3568999999999999988 579999999888766
Q ss_pred HHHHH
Q 016983 198 TVRSL 202 (379)
Q Consensus 198 ~l~~l 202 (379)
....+
T Consensus 477 ~~~~l 481 (1724)
T 4f92_B 477 YYLSL 481 (1724)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 63
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.81 E-value=3.8e-20 Score=188.44 Aligned_cols=184 Identities=11% Similarity=0.107 Sum_probs=129.7
Q ss_pred HHHHHHHHhCCCCCcEEEEeeeCChHHHHHHH-HhcCCCceEEeeccc----ccccccceEEEEEEcC------------
Q 016983 8 EDVELILENLPPKRQSMLFSATMPSWVKKLSR-KYLDNPLNIDLVGNQ----DEKLAEGIKLYAISTT------------ 70 (379)
Q Consensus 8 ~di~~Il~~~p~~~Q~llfSAT~p~~i~~l~~-~~l~~p~~i~~~~~~----~~~~~~~i~~~~~~~~------------ 70 (379)
+++..+++.++...+++++|||+|.....+.. ..+.++..+.+.... ....+..+....+..+
T Consensus 240 ~~~~~il~~~~~~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (510)
T 2oca_A 240 KSISSIISGLNNCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTY 319 (510)
T ss_dssp HHHHHHGGGCTTCCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCH
T ss_pred ccHHHHHHhcccCcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccch
Confidence 56788889998899999999999766433221 122334333221100 0000111111111111
Q ss_pred ---------CccHHHHHHHHHHHH-cC-CCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCce
Q 016983 71 ---------ATSKRTILSDLITVY-AK-GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKF 138 (379)
Q Consensus 71 ---------~~~k~~~L~~ll~~~-~~-~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~ 138 (379)
...+...+..++... .. +.++||||+ .+.++.+++.|.. +..+..+||+|++.+|+++++.|++|+.
T Consensus 320 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~ 398 (510)
T 2oca_A 320 QEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKG 398 (510)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCC
Confidence 112333445555443 22 345666666 7888889999986 5789999999999999999999999999
Q ss_pred eEEEec-cccccCCCCCccceEEecCCCCChhHHHHHHhhccCCCCCceEEEEeC
Q 016983 139 TVLVAT-DVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT 192 (379)
Q Consensus 139 ~iLVaT-dv~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~ 192 (379)
+||||| +++++|+|+|++++||++++|.++..|+||+||+||.|..|.++++++
T Consensus 399 ~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 399 IIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp CEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred CEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 999999 999999999999999999999999999999999999998775555554
No 64
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.81 E-value=4.5e-21 Score=193.43 Aligned_cols=118 Identities=24% Similarity=0.433 Sum_probs=103.7
Q ss_pred CccHHHHHHHHHHHHcCCCcEEEEecccccHHHHHHHHhcCCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccC
Q 016983 71 ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 150 (379)
Q Consensus 71 ~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rG 150 (379)
...|...+.+++... .+.++||||++++.++.++..| .+..+||++++.+|++++++|++|+.+|||||+++++|
T Consensus 333 ~~~k~~~l~~~l~~~-~~~k~lvF~~~~~~~~~l~~~l----~~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~G 407 (472)
T 2fwr_A 333 SKNKIRKLREILERH-RKDKIIIFTRHNELVYRISKVF----LIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEG 407 (472)
T ss_dssp CSHHHHHHHHHHHHT-SSSCBCCBCSCHHHHHHHHHHT----TCCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSS
T ss_pred ChHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHh----CcceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcC
Confidence 345777888888774 5789999999999999999887 36789999999999999999999999999999999999
Q ss_pred CCCCccceEEecCCCCChhHHHHHHhhccCCCCC-ceEE--EEeCh
Q 016983 151 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKE-GTAI--LMFTS 193 (379)
Q Consensus 151 iDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~-g~~i--~l~~~ 193 (379)
+|+|++++||+++.|.++..|+||+||+||.|.. +.++ .+++.
T Consensus 408 ldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~ 453 (472)
T 2fwr_A 408 IDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISR 453 (472)
T ss_dssp SCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEEC
T ss_pred cccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeC
Confidence 9999999999999999999999999999999844 3444 45543
No 65
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.80 E-value=1e-19 Score=171.34 Aligned_cols=125 Identities=15% Similarity=0.272 Sum_probs=98.0
Q ss_pred CCccHHHHHHHHHHHH-cCCCcEEEEecccccHHHHHHHHhc--CCcEEEeeCCCCHHHHHHHHhcccCC-cee-EEEec
Q 016983 70 TATSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQG-KFT-VLVAT 144 (379)
Q Consensus 70 ~~~~k~~~L~~ll~~~-~~~~~~IIF~~t~~~~~~l~~~L~~--~~~v~~lhg~m~~~~R~~~~~~F~~g-~~~-iLVaT 144 (379)
....|...|.+++... ..+.++||||+++..++.+...|.. ++.+..+||++++.+|+.++++|+++ ..+ +|++|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 3467999999888765 3578999999999999999999974 88999999999999999999999998 677 78999
Q ss_pred cccccCCCCCccceEEecCCCCChhHHHHHHhhccCCCCCceE--EEEeChh
Q 016983 145 DVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTA--ILMFTSS 194 (379)
Q Consensus 145 dv~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~--i~l~~~~ 194 (379)
+++++|+|++++++||+||+|+++..|.||+||++|.|+++.+ +.+++..
T Consensus 173 ~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 173 KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp CTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 9999999999999999999999999999999999999977655 4555543
No 66
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.77 E-value=1.3e-18 Score=180.50 Aligned_cols=101 Identities=21% Similarity=0.280 Sum_probs=88.8
Q ss_pred HHHHcCCCcEEEEecccccHHHHHHHHhc-C--------CcEEEeeCCCCHHHHHHHHhcccCCcee---EEEecccccc
Q 016983 82 ITVYAKGGKTIVFTQTKRDADEVSLALTS-I--------IASEALHGDISQHQRERTLNGFRQGKFT---VLVATDVAAR 149 (379)
Q Consensus 82 l~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~--------~~v~~lhg~m~~~~R~~~~~~F~~g~~~---iLVaTdv~~r 149 (379)
+....+.+++||||++++.|+.++..|.. + -.+..+||++++ +|+.++++|++|+.+ |||||+++++
T Consensus 433 l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~ 511 (590)
T 3h1t_A 433 MKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTT 511 (590)
T ss_dssp HHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTT
T ss_pred HHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhc
Confidence 33334568999999999999999999964 2 127889999864 799999999998876 8999999999
Q ss_pred CCCCCccceEEecCCCCChhHHHHHHhhccCCCC
Q 016983 150 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK 183 (379)
Q Consensus 150 GiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~ 183 (379)
|+|+|++++||++++|.++..|+||+||+||.|.
T Consensus 512 GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 512 GVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp TCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred CccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 9999999999999999999999999999999774
No 67
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.67 E-value=1e-16 Score=162.61 Aligned_cols=123 Identities=15% Similarity=0.278 Sum_probs=103.6
Q ss_pred ccHHHHHHHHHHHH-cCCCcEEEEecccccHHHHHHHHhc--CCcEEEeeCCCCHHHHHHHHhcccCC-cee-EEEeccc
Q 016983 72 TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQG-KFT-VLVATDV 146 (379)
Q Consensus 72 ~~k~~~L~~ll~~~-~~~~~~IIF~~t~~~~~~l~~~L~~--~~~v~~lhg~m~~~~R~~~~~~F~~g-~~~-iLVaTdv 146 (379)
..|...+.+++... ..+.++||||+++..++.++..|.. ++.+..+||++++.+|++++++|++| ..+ +|++|++
T Consensus 324 s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~ 403 (500)
T 1z63_A 324 SGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKA 403 (500)
T ss_dssp CHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCC
T ss_pred chhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeccc
Confidence 46777777777654 4578999999999999999999974 78999999999999999999999988 555 8999999
Q ss_pred cccCCCCCccceEEecCCCCChhHHHHHHhhccCCCCCceE--EEEeChh
Q 016983 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTA--ILMFTSS 194 (379)
Q Consensus 147 ~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~--i~l~~~~ 194 (379)
+++|+|+|++++||+||+|+++..|.||+||++|.|+.+.+ +.++...
T Consensus 404 ~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 404 GGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp C-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred ccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 99999999999999999999999999999999999977655 4455543
No 68
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.64 E-value=1.2e-15 Score=160.00 Aligned_cols=134 Identities=12% Similarity=0.244 Sum_probs=113.0
Q ss_pred ccHHHHHHHHHHHH--cCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCcee---EEEecc
Q 016983 72 TSKRTILSDLITVY--AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFT---VLVATD 145 (379)
Q Consensus 72 ~~k~~~L~~ll~~~--~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~---iLVaTd 145 (379)
..|...+..++... ..+.++||||+++..++.+...|.. ++.+..+||++++.+|++++++|++|... +|++|+
T Consensus 398 s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~ 477 (644)
T 1z3i_X 398 SGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSK 477 (644)
T ss_dssp SHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGG
T ss_pred ChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecc
Confidence 45777888887765 2478999999999999999999975 89999999999999999999999998754 899999
Q ss_pred ccccCCCCCccceEEecCCCCChhHHHHHHhhccCCCCCce--EEEEeChh--hHHHHHHHHHH
Q 016983 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGT--AILMFTSS--QRRTVRSLERD 205 (379)
Q Consensus 146 v~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~--~i~l~~~~--e~~~l~~le~~ 205 (379)
++++|+|++++++||+||+|+++..|.|++||++|.|++.. +|.+++.. |...+...++.
T Consensus 478 a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K 541 (644)
T 1z3i_X 478 AGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHK 541 (644)
T ss_dssp GSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHH
T ss_pred cccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999996654 44455544 44444444443
No 69
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.60 E-value=5.7e-15 Score=158.54 Aligned_cols=136 Identities=18% Similarity=0.323 Sum_probs=116.9
Q ss_pred ccHHHHHHHHHHHH-cCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCce---eEEEeccc
Q 016983 72 TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKF---TVLVATDV 146 (379)
Q Consensus 72 ~~k~~~L~~ll~~~-~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~---~iLVaTdv 146 (379)
..|..+|..++..+ ..+.++||||.....++.+...|.. ++.+..+||++++.+|+.++++|+++.. .+|++|++
T Consensus 555 s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~a 634 (800)
T 3mwy_W 555 SGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRA 634 (800)
T ss_dssp CHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHH
T ss_pred ChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEeccc
Confidence 45788888888776 3467999999999999999999974 8999999999999999999999998655 49999999
Q ss_pred cccCCCCCccceEEecCCCCChhHHHHHHhhccCCCCCce--EEEEeChh--hHHHHHHHHHHhC
Q 016983 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGT--AILMFTSS--QRRTVRSLERDVG 207 (379)
Q Consensus 147 ~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~--~i~l~~~~--e~~~l~~le~~~~ 207 (379)
++.|+|++.+++||+||+|+++..+.||+||++|.|++.. ++.|++.. |...+...++...
T Consensus 635 gg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~ 699 (800)
T 3mwy_W 635 GGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMI 699 (800)
T ss_dssp HTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTT
T ss_pred ccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999996544 45556554 6667777666653
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.53 E-value=4e-14 Score=154.70 Aligned_cols=120 Identities=11% Similarity=0.111 Sum_probs=95.4
Q ss_pred CCcEEEEecccccHHHHHHHHhc-C------------CcE-EEeeCC----------C----------CHH---------
Q 016983 88 GGKTIVFTQTKRDADEVSLALTS-I------------IAS-EALHGD----------I----------SQH--------- 124 (379)
Q Consensus 88 ~~~~IIF~~t~~~~~~l~~~L~~-~------------~~v-~~lhg~----------m----------~~~--------- 124 (379)
+.++||||+|+..|..++..|.. + +.+ ..+||+ + ++.
T Consensus 537 g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I 616 (1038)
T 2w00_A 537 GFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAI 616 (1038)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHH
Confidence 45899999999999999998864 2 344 455642 2 332
Q ss_pred --------------------HHHHHHhcccCCceeEEEeccccccCCCCCccceEEecCCCCChhHHHHHHhhccCCCCC
Q 016983 125 --------------------QRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKE 184 (379)
Q Consensus 125 --------------------~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~ 184 (379)
+|..++++|++|+++|||+||++.+|+|+|.+ +|+++|.|.+...|+|++||++|.+..
T Consensus 617 ~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~ 695 (1038)
T 2w00_A 617 REYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDA 695 (1038)
T ss_dssp HHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCT
T ss_pred HHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCC
Confidence 48889999999999999999999999999999 789999999999999999999998753
Q ss_pred ----ceEEEEeChhhHHHHHHHHHHhCCC
Q 016983 185 ----GTAILMFTSSQRRTVRSLERDVGCK 209 (379)
Q Consensus 185 ----g~~i~l~~~~e~~~l~~le~~~~~~ 209 (379)
|.++.|+.. .......+..+.+..
T Consensus 696 ~K~~G~IVdf~~~-~~~l~~Al~~y~~~~ 723 (1038)
T 2w00_A 696 TKTFGNIVTFRDL-ERSTIDAITLFGDKN 723 (1038)
T ss_dssp TCCSEEEEESSCC-HHHHHHHHHHTSCSS
T ss_pred CCCcEEEEEcccc-HHHHHHHHHHHhCCC
Confidence 666666654 445556666665544
No 71
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=99.12 E-value=1.8e-11 Score=92.54 Aligned_cols=72 Identities=18% Similarity=0.227 Sum_probs=53.4
Q ss_pred EEEEEeeCCcccCCCCChhHHHHHHhhhCCCCCCccccEEeeeCCceeeeecchhhHHHHhhhhcccCcceEeeeehhh
Q 016983 287 VTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVCIDTVILLYFYASVRLGLFNTKSVIWLTYRFR 365 (379)
Q Consensus 287 ~~l~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~ig~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (379)
+||+++.|+ +|++.|++|+++|++++|+++++||+|+|+++++ .+++|+..++.++..+++.+++++..+++
T Consensus 1 ~~~~i~~Gr---k~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~~s----~v~v~~~~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 1 MKLYFNGGK---KKKIRAVDFVGTIAKIDGVSADDIGIITIMDNAS----YVEILNGKGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp CEEEESCCC---C----CHHHHHHHHTSTTCCGGGEEEEEECSSCE----EEEECTTCHHHHHHHHTTCCC---CCCEE
T ss_pred CEEEEeCCC---ccCCCHHHHHHHHHHccCCChhhccEEEEeCCcE----EEEECHHHHHHHHHHhccccCcCceEEEE
Confidence 379999999 9999999999999999999999999999999999 55666666666666666666666655543
No 72
>2e29_A ATP-dependent RNA helicase DDX50; ATP binding, hydrolase, nuclear protein, nucleotide-binding, RNA-binding, GUCT domain, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.5
Probab=98.78 E-value=9.6e-09 Score=79.92 Aligned_cols=83 Identities=17% Similarity=0.141 Sum_probs=71.1
Q ss_pred HcCCCCCCCCCccccCCCCeEEEEEeeCCcccCCCCChhHHHHHHhhhCC-CCCCccccEEeeeCCceeeeecchhhHHH
Q 016983 267 LSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYP-TAADEIGKIHIIADDRVCIDTVILLYFYA 345 (379)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~i~~~~~~~~~-~~~~~ig~i~i~~~~~~~~~~~~~~~~~~ 345 (379)
++|+.+ +++||++++.+|++|+.+..++ ..-+|+++|++|++..+ ...++|++|++.+|.+ |+|||||+..+
T Consensus 2 ~SG~te-~~~RSLLt~~eG~~Tl~l~~~~----~i~~~~y~w~~L~~~l~e~~~~~v~~m~l~~d~~--GavFDvP~e~~ 74 (92)
T 2e29_A 2 SSGSSG-FEPRSLITSDKGFVTMTLESLE----EIQDVSCAWKELNRKLSSNAVSQITRMCLLKGNM--GVCFDVPTTES 74 (92)
T ss_dssp CCSCSC-CCCCCCCCCCCCEEEEEEECSS----CCSSTHHHHHHHHHHSCHHHHTTCEEEEECTTSS--EEEEEEEHHHH
T ss_pred CCCcCC-CCCcccccCCCCCEEEEEecCC----cccchHHHHHHHHHhcCHHHHhhhCeEEEecCCC--EEEEECcHHHH
Confidence 467777 4569999999999999998876 46789999999999666 4556899999999999 99999999999
Q ss_pred HhhhhcccCcc
Q 016983 346 SVRLGLFNTKS 356 (379)
Q Consensus 346 ~~~~~~~~~~~ 356 (379)
+.+++...+..
T Consensus 75 ~~~~~~~~~~~ 85 (92)
T 2e29_A 75 ERLQAEWHDSD 85 (92)
T ss_dssp HHHHHHCCSSS
T ss_pred HHHHhhCCCCc
Confidence 99998776655
No 73
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=98.67 E-value=6.7e-07 Score=95.00 Aligned_cols=205 Identities=19% Similarity=0.222 Sum_probs=130.4
Q ss_pred cEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHH-HHHHHHHcCCCcEEEEeccccc
Q 016983 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL-SDLITVYAKGGKTIVFTQTKRD 100 (379)
Q Consensus 22 Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L-~~ll~~~~~~~~~IIF~~t~~~ 100 (379)
.+..||.|...+..++.+.|--+ .+.+ +........... -.+......|..++ .++...+..+.|+||+|.|.+.
T Consensus 380 kLsGMTGTA~tE~~Ef~~iY~l~--Vv~I-PTn~p~~R~D~~-d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~ 455 (997)
T 2ipc_A 380 KRAGMTGTAKTEEKEFQEIYGMD--VVVV-PTNRPVIRKDFP-DVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEK 455 (997)
T ss_dssp EEEEEESSCGGGHHHHHHHHCCC--EEEC-CCSSCCCCEEEE-EEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHH
T ss_pred HheecCCCchHHHHHHHHHhCCC--EEEc-CCCCCcccccCC-CeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHH
Confidence 56679999988888888877544 2322 222111111111 22233345566554 4555566678999999999999
Q ss_pred HHHHHHHHh-----------------------------------------------------------------------
Q 016983 101 ADEVSLALT----------------------------------------------------------------------- 109 (379)
Q Consensus 101 ~~~l~~~L~----------------------------------------------------------------------- 109 (379)
.+.++..|.
T Consensus 456 SE~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 535 (997)
T 2ipc_A 456 SERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVH 535 (997)
T ss_dssp HHHHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccchhhh
Confidence 999998887
Q ss_pred -----c-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCcc-------------------c-------
Q 016983 110 -----S-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV-------------------D------- 157 (379)
Q Consensus 110 -----~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v-------------------~------- 157 (379)
. +++..+|.+.-...+-+-+-+.=+.| .|-|||+.|+||.||.-- +
T Consensus 536 ~~~~~~~gI~H~VLNAK~he~EAeIIAqAG~~G--aVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~ 613 (997)
T 2ipc_A 536 TLAVLRQGIPHQVLNAKHHAREAEIVAQAGRSK--TVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFI 613 (997)
T ss_dssp HHHHHHHCCCCCEECSSSHHHHHHHHHTTTSTT--CEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHH
T ss_pred hhHHHHcCCCeeeccccchHHHHHHHHhcCCCC--eEEEEecccCCCcCeecCCCHHHHHHHHHHhhccccccccccccc
Confidence 2 45556666664333333333433444 588999999999998321 1
Q ss_pred ------------------------------------------------eEEecCCCCChhHHHHHHhhccCCCCCceEEE
Q 016983 158 ------------------------------------------------LIIHYELPNDPETFVHRSGRTGRAGKEGTAIL 189 (379)
Q Consensus 158 ------------------------------------------------~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~ 189 (379)
|||--..+.|..-=.|-.||+||.|.+|.+..
T Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF 693 (997)
T 2ipc_A 614 KKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRF 693 (997)
T ss_dssp HHHHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEE
T ss_pred ccccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCCeEE
Confidence 78888889999999999999999999999988
Q ss_pred EeChhhH-------HHHHHHHHHhCCCceeeCCCCHHHHHHHHHHHHHHHHcc
Q 016983 190 MFTSSQR-------RTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG 235 (379)
Q Consensus 190 l~~~~e~-------~~l~~le~~~~~~~~~~~~p~~~~i~~~~~~~~~~~l~~ 235 (379)
|++-.|. ..+..+...++.+- ..|....++...++.+...++.
T Consensus 694 ~LSLeDdLmr~fg~~~~~~~m~~l~~~~---~~~Ie~~~v~~~ie~AQkkvE~ 743 (997)
T 2ipc_A 694 YVSFDDDLMRLFASDRVIAMLDRMGFDD---SEPIEHPMVTRSIERAQKRVED 743 (997)
T ss_dssp EEESSSHHHHHSSCTTHHHHHHHTCCCS---SSCBCCHHHHHHHHHHHHHHHH
T ss_pred EEECChHHHHhhchHHHHHHHHHcCCCC---CCcccchHHHHHHHHHHHHHHH
Confidence 8876542 12334444444321 1233334555555555555443
No 74
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.20 E-value=1.7e-06 Score=88.54 Aligned_cols=75 Identities=16% Similarity=0.287 Sum_probs=49.7
Q ss_pred CCCcEEEEecccccHHHHHHHHhcCCcEEEeeCCCCHHHHHHHHhcccCCceeEEE--eccccccCCCCCc----cceEE
Q 016983 87 KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV--ATDVAARGLDIPN----VDLII 160 (379)
Q Consensus 87 ~~~~~IIF~~t~~~~~~l~~~L~~~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLV--aTdv~~rGiDip~----v~~VI 160 (379)
.++.+|||++|....+.++..|.. .. ...+|.. .+|+++++.|+++. .||+ +|+.+++|||+|+ +++||
T Consensus 383 ~~g~~lvff~S~~~~~~v~~~l~~-~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~Vi 457 (540)
T 2vl7_A 383 SSKSVLVFFPSYEMLESVRIHLSG-IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESLV 457 (540)
T ss_dssp CSSEEEEEESCHHHHHHHHTTCTT-SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHhcc-Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEEE
Confidence 467899999999999999887754 33 4556654 46889999999864 5666 8999999999998 89999
Q ss_pred ecCCCC
Q 016983 161 HYELPN 166 (379)
Q Consensus 161 ~~~~P~ 166 (379)
++++|.
T Consensus 458 i~~lPf 463 (540)
T 2vl7_A 458 LAGLPY 463 (540)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 999985
No 75
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.92 E-value=8.4e-05 Score=77.28 Aligned_cols=76 Identities=22% Similarity=0.294 Sum_probs=53.7
Q ss_pred CCcEEEEecccccHHHHHHHHhcCCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecc--ccccCCCCCc--cceEEecC
Q 016983 88 GGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATD--VAARGLDIPN--VDLIIHYE 163 (379)
Q Consensus 88 ~~~~IIF~~t~~~~~~l~~~L~~~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTd--v~~rGiDip~--v~~VI~~~ 163 (379)
++.++||++|....+.+++.|. .+... ..-+++..++..++++|+ +...||++|. .+++|||+|+ ..+||..+
T Consensus 448 ~g~~lvlF~Sy~~l~~v~~~l~-~~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~ 524 (620)
T 4a15_A 448 KKNTIVYFPSYSLMDRVENRVS-FEHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAG 524 (620)
T ss_dssp CSCEEEEESCHHHHHHHTSSCC-SCCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESS
T ss_pred CCCEEEEeCCHHHHHHHHHHHH-hcchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEc
Confidence 6789999999999988888775 22222 445566678999999999 8888999975 9999999986 45899888
Q ss_pred CCC
Q 016983 164 LPN 166 (379)
Q Consensus 164 ~P~ 166 (379)
+|.
T Consensus 525 lPf 527 (620)
T 4a15_A 525 LPF 527 (620)
T ss_dssp CCC
T ss_pred CCC
Confidence 775
No 76
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=97.79 E-value=1.5e-05 Score=72.92 Aligned_cols=63 Identities=33% Similarity=0.566 Sum_probs=45.2
Q ss_pred CCCCChHHHHHHHHHh--CCC--CCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEE
Q 016983 1 MLAVGFEEDVELILEN--LPP--KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLY 65 (379)
Q Consensus 1 mL~~GF~~di~~Il~~--~p~--~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~ 65 (379)
|+++||.+++..|+.. .+. ++|+++||||+|+++.++++.++.+|..|.+.. ......+++|+
T Consensus 186 ~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~--~~~~~~~i~q~ 252 (253)
T 1wrb_A 186 MLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGR--VGSTSDSIKQE 252 (253)
T ss_dssp HHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC--------------
T ss_pred HHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECC--CCCCcCCceec
Confidence 4678999999999995 454 789999999999999999999999999887642 22334555543
No 77
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=97.39 E-value=0.0028 Score=64.73 Aligned_cols=75 Identities=12% Similarity=0.119 Sum_probs=53.1
Q ss_pred CCCcEEEEecccccHHHHHHHHhcCCcEEEeeCCCCHHHHHHHHhcccCCceeEEEec--cccccCCCCC-----ccceE
Q 016983 87 KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVAT--DVAARGLDIP-----NVDLI 159 (379)
Q Consensus 87 ~~~~~IIF~~t~~~~~~l~~~L~~~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaT--dv~~rGiDip-----~v~~V 159 (379)
.++.++||++|....+.+++. .+..+..=..+++. ...++.|+.....||+|| .....|||+| .+++|
T Consensus 392 ~~g~~lvlF~Sy~~l~~v~~~--~~~~v~~q~~~~~~---~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~v 466 (551)
T 3crv_A 392 AKANVLVVFPSYEIMDRVMSR--ISLPKYVESEDSSV---EDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISDV 466 (551)
T ss_dssp CSSEEEEEESCHHHHHHHHTT--CCSSEEECCSSCCH---HHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEEE
T ss_pred CCCCEEEEecCHHHHHHHHHh--cCCcEEEcCCCCCH---HHHHHHHHhcCCeEEEEEecceecccccccccCCcceeEE
Confidence 367999999999988888863 23333333335554 446667743334799998 6999999999 36788
Q ss_pred EecCCCC
Q 016983 160 IHYELPN 166 (379)
Q Consensus 160 I~~~~P~ 166 (379)
|..++|.
T Consensus 467 iI~~lPf 473 (551)
T 3crv_A 467 VIVGIPY 473 (551)
T ss_dssp EEESCCC
T ss_pred EEEcCCC
Confidence 8877764
No 78
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=96.95 E-value=0.0069 Score=57.59 Aligned_cols=121 Identities=13% Similarity=0.119 Sum_probs=85.0
Q ss_pred CccHHHHHHHHHHHH-cCCCcEEEEecccccHHHHHHHHh-cCCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccc
Q 016983 71 ATSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 148 (379)
Q Consensus 71 ~~~k~~~L~~ll~~~-~~~~~~IIF~~t~~~~~~l~~~L~-~~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~ 148 (379)
.+.|..+|.+++... ..+.+++||++..+..+-+..++. +++...-+.|.....+ .+. .+....+.+.|...+
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~-~k~----~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSA-AAA----NDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhh-hhc----ccCCceEEEEECCCC
Confidence 468999999999876 346799999999999999988887 4888889998855432 221 234555555566666
Q ss_pred cCCC-----CCccceEEecCCCCChhH-HHHHHhhccCCC----CCceEEEEeChhhH
Q 016983 149 RGLD-----IPNVDLIIHYELPNDPET-FVHRSGRTGRAG----KEGTAILMFTSSQR 196 (379)
Q Consensus 149 rGiD-----ip~v~~VI~~~~P~~~~~-yiqR~GRtgR~G----~~g~~i~l~~~~e~ 196 (379)
-|+| ....+.||-||.-+++.. .+|..-|+.|.| +.-.+|.+++....
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~Ti 239 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSI 239 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSH
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCH
Confidence 6675 678899999999998876 488777777752 45677878876543
No 79
>3i31_A Heat resistant RNA dependent ATPase; RNA helicase, RNA recognition motif, ATP-binding, helicase, nucleotide-binding; 1.80A {Thermus thermophilus}
Probab=95.53 E-value=0.016 Score=43.20 Aligned_cols=56 Identities=27% Similarity=0.277 Sum_probs=44.0
Q ss_pred CCCccccCCCCeEEEEEeeCCcccCCCCChhHHHHHHhhhCCCCCCccccEEeeeCCceeeeecchhhHH
Q 016983 275 SSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVCIDTVILLYFY 344 (379)
Q Consensus 275 ~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~ig~i~i~~~~~~~~~~~~~~~~~ 344 (379)
+++|++++++||+|+.++.- .++..-+|.+|.+.+- +||+|..-+... +.|++...
T Consensus 2 ~~~SLLTGEEGw~Tlkl~G~------rLS~~R~VAlLk~aG~----~iGkI~~~~~ga----yaDlr~e~ 57 (88)
T 3i31_A 2 AERSLLTGEEGWRTYKATGP------RLSLPRLVALLKGQGL----EVGKVAEAEGGF----YVDLRPEA 57 (88)
T ss_dssp CCBCTTTCCBSCEEEEEECT------TCCHHHHHHHHHHTTC----CEEEEEEETTEE----EEEECTTC
T ss_pred CcccccccCcceEEEEEecc------cccHHHHHHHHHHccc----ccccEEecccee----EEecChHH
Confidence 35799999999999999654 4888899998887665 999999766555 77776544
No 80
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.74 E-value=0.057 Score=57.44 Aligned_cols=90 Identities=20% Similarity=0.286 Sum_probs=70.4
Q ss_pred ccHHHH-HHHHHHHHcCCCcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecc
Q 016983 72 TSKRTI-LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (379)
Q Consensus 72 ~~k~~~-L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTd 145 (379)
..|..+ +..++.....+.+++|.++|+.-+.+.+..+.. ++.+..+||+++..+|...++.+.+|..+|+|+|.
T Consensus 400 SGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~ 479 (780)
T 1gm5_A 400 SGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTH 479 (780)
T ss_dssp SSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECT
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 455543 333344444578999999999988888877652 57899999999999999999999999999999996
Q ss_pred c-cccCCCCCccceEEe
Q 016983 146 V-AARGLDIPNVDLIIH 161 (379)
Q Consensus 146 v-~~rGiDip~v~~VI~ 161 (379)
. +...+++.++.+||-
T Consensus 480 ~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 480 ALIQEDVHFKNLGLVII 496 (780)
T ss_dssp THHHHCCCCSCCCEEEE
T ss_pred HHHhhhhhccCCceEEe
Confidence 4 445678888888874
No 81
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=93.52 E-value=0.1 Score=50.58 Aligned_cols=79 Identities=14% Similarity=0.206 Sum_probs=63.5
Q ss_pred HHHHcCCCcEEEEecccccHHHHHHHHhc----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccc----cCCCC
Q 016983 82 ITVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA----RGLDI 153 (379)
Q Consensus 82 l~~~~~~~~~IIF~~t~~~~~~l~~~L~~----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~----rGiDi 153 (379)
+.....+.++||.++|+.-+.+++..+.. ++.+..+||+.+..++....+.+..|..+|+|+|+-.- .-++.
T Consensus 58 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~ 137 (414)
T 3oiy_A 58 LWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQ 137 (414)
T ss_dssp HHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTT
T ss_pred HHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcc
Confidence 33334578999999999999999988875 67899999999999998888999889899999997432 12455
Q ss_pred CccceEE
Q 016983 154 PNVDLII 160 (379)
Q Consensus 154 p~v~~VI 160 (379)
.++++||
T Consensus 138 ~~~~~iV 144 (414)
T 3oiy_A 138 KRFDFVF 144 (414)
T ss_dssp CCCSEEE
T ss_pred ccccEEE
Confidence 6777777
No 82
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=90.57 E-value=0.58 Score=51.90 Aligned_cols=89 Identities=15% Similarity=0.178 Sum_probs=69.6
Q ss_pred ccHHHHHH-HHHHHHcCCCcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecc
Q 016983 72 TSKRTILS-DLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (379)
Q Consensus 72 ~~k~~~L~-~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTd 145 (379)
..|..+.. ..+.....+.+++|.|+|+.-+.+.++.+.. ++.+..++|..+..++...++.+.+|..+|+|+|.
T Consensus 635 sGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~ 714 (1151)
T 2eyq_A 635 FGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTH 714 (1151)
T ss_dssp TTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECT
T ss_pred CCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 45654332 2233334567999999999999888888763 36788999999999999999999999999999995
Q ss_pred -ccccCCCCCccceEE
Q 016983 146 -VAARGLDIPNVDLII 160 (379)
Q Consensus 146 -v~~rGiDip~v~~VI 160 (379)
.+...+.+.++.+||
T Consensus 715 ~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 715 KLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp HHHHSCCCCSSEEEEE
T ss_pred HHHhCCccccccceEE
Confidence 555568888888877
No 83
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=90.35 E-value=0.34 Score=53.44 Aligned_cols=90 Identities=14% Similarity=0.182 Sum_probs=68.4
Q ss_pred ccHHHHH-HHHHHHHcCCCcEEEEecccccHHHHHHHHhc----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccc
Q 016983 72 TSKRTIL-SDLITVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (379)
Q Consensus 72 ~~k~~~L-~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv 146 (379)
..|..+. ..++.....+.++||.++|+.-+.+++..+.. ++.+..+||+++..+|...++.+.+|..+|+|+|+-
T Consensus 104 SGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~ 183 (1104)
T 4ddu_A 104 VGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQ 183 (1104)
T ss_dssp CCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHH
T ss_pred CcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHH
Confidence 4565533 22333334578999999999999999999876 468999999999988888999999999999999973
Q ss_pred cc-c---CCCCCccceEEe
Q 016983 147 AA-R---GLDIPNVDLIIH 161 (379)
Q Consensus 147 ~~-r---GiDip~v~~VI~ 161 (379)
.- . -++..++++||-
T Consensus 184 rL~~~l~~l~~~~l~~lVi 202 (1104)
T 4ddu_A 184 FVSKNREKLSQKRFDFVFV 202 (1104)
T ss_dssp HHHHSHHHHHTSCCSEEEE
T ss_pred HHHHHHHhhcccCcCEEEE
Confidence 22 1 145567887773
No 84
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=86.33 E-value=1.3 Score=45.46 Aligned_cols=60 Identities=13% Similarity=0.172 Sum_probs=53.0
Q ss_pred CCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcc--cCCceeEEEeccc
Q 016983 87 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGF--RQGKFTVLVATDV 146 (379)
Q Consensus 87 ~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F--~~g~~~iLVaTdv 146 (379)
..+.+||.++++.-++.....|.. ++.+..+||+++..++..++..+ ..+..+|+++|+-
T Consensus 83 ~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe 145 (591)
T 2v1x_A 83 SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPE 145 (591)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHH
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChh
Confidence 467999999999999988888875 89999999999999999888888 5788999999983
No 85
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=85.12 E-value=2 Score=38.06 Aligned_cols=69 Identities=16% Similarity=0.225 Sum_probs=50.3
Q ss_pred CCcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccc-----cc-cCCCCCcc
Q 016983 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AA-RGLDIPNV 156 (379)
Q Consensus 88 ~~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv-----~~-rGiDip~v 156 (379)
+.++||.|+|+.-+.+++..+.. ++.+..++|+.+.......+.. ..+|+|+|+- +. ..+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 56799999999999888777653 6789999999988776655542 3689999962 22 23456666
Q ss_pred ceEE
Q 016983 157 DLII 160 (379)
Q Consensus 157 ~~VI 160 (379)
++||
T Consensus 178 ~~lV 181 (242)
T 3fe2_A 178 TYLV 181 (242)
T ss_dssp CEEE
T ss_pred cEEE
Confidence 6665
No 86
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=85.02 E-value=1.8 Score=43.44 Aligned_cols=74 Identities=19% Similarity=0.188 Sum_probs=59.6
Q ss_pred CCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccc------cCCCCCccceE
Q 016983 87 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA------RGLDIPNVDLI 159 (379)
Q Consensus 87 ~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~------rGiDip~v~~V 159 (379)
..+.+||.++++.-++.....|.. ++.+..+||+.+..++..+...+..|..+++++|+--- ..++..++++|
T Consensus 64 ~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~v 143 (523)
T 1oyw_A 64 LNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLL 143 (523)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEE
T ss_pred hCCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEE
Confidence 357899999999999988888875 78999999999999999999999999999999996321 12333456665
Q ss_pred E
Q 016983 160 I 160 (379)
Q Consensus 160 I 160 (379)
|
T Consensus 144 V 144 (523)
T 1oyw_A 144 A 144 (523)
T ss_dssp E
T ss_pred E
Confidence 5
No 87
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=83.90 E-value=2.6 Score=36.44 Aligned_cols=69 Identities=17% Similarity=0.250 Sum_probs=49.6
Q ss_pred CcEEEEecccccHHHHHHHHhc------CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecccc------ccCCCCCcc
Q 016983 89 GKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPNV 156 (379)
Q Consensus 89 ~~~IIF~~t~~~~~~l~~~L~~------~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~------~rGiDip~v 156 (379)
.++||.|+|+.-++++++.+.. +..+..+||+.+...+...+. ++..+|+|+|.-. ...+++.++
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~---~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK---KNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHH---HSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHh---cCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 4899999999999888877653 577899999998776654443 3556899999631 223455666
Q ss_pred ceEE
Q 016983 157 DLII 160 (379)
Q Consensus 157 ~~VI 160 (379)
++||
T Consensus 160 ~~lV 163 (220)
T 1t6n_A 160 KHFI 163 (220)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 6655
No 88
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=82.60 E-value=2.5 Score=35.97 Aligned_cols=70 Identities=23% Similarity=0.252 Sum_probs=48.9
Q ss_pred CCCcEEEEecccccHHHHHHHHhc---CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccc-----cc-cCCCCCccc
Q 016983 87 KGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AA-RGLDIPNVD 157 (379)
Q Consensus 87 ~~~~~IIF~~t~~~~~~l~~~L~~---~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv-----~~-rGiDip~v~ 157 (379)
.+.++||.|+++.-+.++++.+.. .+.+..+||+.+.......+. ...+|+|+|+- .. ..+++.+++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 356899999999999999888874 467888999887655443332 24679999962 12 234556666
Q ss_pred eEE
Q 016983 158 LII 160 (379)
Q Consensus 158 ~VI 160 (379)
+||
T Consensus 147 ~iV 149 (207)
T 2gxq_A 147 VAV 149 (207)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 89
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=81.84 E-value=4.6 Score=35.95 Aligned_cols=69 Identities=19% Similarity=0.268 Sum_probs=49.5
Q ss_pred CCcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecccc-----c--cCCCCCc
Q 016983 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA-----A--RGLDIPN 155 (379)
Q Consensus 88 ~~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~-----~--rGiDip~ 155 (379)
+.++||.++|+.-+.++++.+.. ++.+..++|+.+...+...+. +..+|+|+|+-- . .++++.+
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA----KKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHH----TCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhc----CCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 45799999999999888877652 578899999988766554442 357899999631 1 3456666
Q ss_pred cceEE
Q 016983 156 VDLII 160 (379)
Q Consensus 156 v~~VI 160 (379)
+++||
T Consensus 187 ~~~lV 191 (249)
T 3ber_A 187 LKYLV 191 (249)
T ss_dssp CCEEE
T ss_pred cCEEE
Confidence 66665
No 90
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=80.98 E-value=3 Score=36.49 Aligned_cols=84 Identities=15% Similarity=0.186 Sum_probs=55.8
Q ss_pred ccHHHH-HHHHHHHH---cCCCcEEEEecccccHHHHHHHHhc------CCcEEEeeCCCCHHHHHHHHhcccCCceeEE
Q 016983 72 TSKRTI-LSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVL 141 (379)
Q Consensus 72 ~~k~~~-L~~ll~~~---~~~~~~IIF~~t~~~~~~l~~~L~~------~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iL 141 (379)
..|..+ +..++... ..+.++||.|+|+.-+.++++.+.. ++.+..++|+.+..++...+. ..+|+
T Consensus 72 sGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~Ii 146 (230)
T 2oxc_A 72 TGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK-----KCHIA 146 (230)
T ss_dssp SSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTT-----SCSEE
T ss_pred CcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhcc-----CCCEE
Confidence 456644 33334332 2346899999999999988887763 467889999998877655542 46899
Q ss_pred Eecccc------ccCCCCCccceEE
Q 016983 142 VATDVA------ARGLDIPNVDLII 160 (379)
Q Consensus 142 VaTdv~------~rGiDip~v~~VI 160 (379)
|+|+-. ...++..++++||
T Consensus 147 v~Tp~~l~~~~~~~~~~~~~~~~lV 171 (230)
T 2oxc_A 147 VGSPGRIKQLIELDYLNPGSIRLFI 171 (230)
T ss_dssp EECHHHHHHHHHTTSSCGGGCCEEE
T ss_pred EECHHHHHHHHhcCCcccccCCEEE
Confidence 999732 1234555555555
No 91
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=80.86 E-value=4.1 Score=34.64 Aligned_cols=69 Identities=19% Similarity=0.153 Sum_probs=47.7
Q ss_pred CCcEEEEecccccHHHHHHHHhc------CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccc-----ccc-CCCCCc
Q 016983 88 GGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AAR-GLDIPN 155 (379)
Q Consensus 88 ~~~~IIF~~t~~~~~~l~~~L~~------~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv-----~~r-GiDip~ 155 (379)
+.++||.|+|+.-+.++++.+.. +..+..++|+.+..+....+ .+..+|+|+|+- ..+ ..++.+
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRL----DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHT----TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhc----CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 45799999999999888887753 46788899998876544333 245789999972 122 234555
Q ss_pred cceEE
Q 016983 156 VDLII 160 (379)
Q Consensus 156 v~~VI 160 (379)
+++||
T Consensus 147 ~~~lV 151 (206)
T 1vec_A 147 VQMIV 151 (206)
T ss_dssp CCEEE
T ss_pred CCEEE
Confidence 66555
No 92
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=80.06 E-value=2.5 Score=36.80 Aligned_cols=70 Identities=14% Similarity=0.236 Sum_probs=44.4
Q ss_pred CCCcEEEEecccccHHHHHHHHhc----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecccc------ccCCCCCcc
Q 016983 87 KGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPNV 156 (379)
Q Consensus 87 ~~~~~IIF~~t~~~~~~l~~~L~~----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~------~rGiDip~v 156 (379)
.+.++||.++|+.-+.++++.+.. ++.+..++|+.+...+...+. ...+|+|+|+-. ...+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDIS----KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHH----SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhc----CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 456899999999999998888764 577888999877655443332 236899999621 223455566
Q ss_pred ceEE
Q 016983 157 DLII 160 (379)
Q Consensus 157 ~~VI 160 (379)
++||
T Consensus 169 ~~lV 172 (228)
T 3iuy_A 169 TYLV 172 (228)
T ss_dssp CEEE
T ss_pred eEEE
Confidence 6555
No 93
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=78.90 E-value=4.6 Score=35.49 Aligned_cols=71 Identities=14% Similarity=0.207 Sum_probs=42.6
Q ss_pred CCCcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecc-----cccc-CCCCCc
Q 016983 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR-GLDIPN 155 (379)
Q Consensus 87 ~~~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTd-----v~~r-GiDip~ 155 (379)
.+.++||.++|+.-+..+++.+.. +..+..++|+.+... ..+.+..+..+|+|+|+ .+.+ .++..+
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 356899999999999988888763 466778888865433 23445567789999994 2233 345566
Q ss_pred cceEE
Q 016983 156 VDLII 160 (379)
Q Consensus 156 v~~VI 160 (379)
+++||
T Consensus 174 ~~~lV 178 (237)
T 3bor_A 174 IKMFV 178 (237)
T ss_dssp CCEEE
T ss_pred CcEEE
Confidence 66665
No 94
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=77.66 E-value=3.1 Score=45.60 Aligned_cols=73 Identities=18% Similarity=0.311 Sum_probs=56.3
Q ss_pred cCCCcEEEEecccccHHHHHHHHhc-----CC----cEEEeeCCCCHHHHHHHHhcccCCceeEEEeccc-cccCCC-CC
Q 016983 86 AKGGKTIVFTQTKRDADEVSLALTS-----II----ASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-AARGLD-IP 154 (379)
Q Consensus 86 ~~~~~~IIF~~t~~~~~~l~~~L~~-----~~----~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv-~~rGiD-ip 154 (379)
..+.++||.++|+.-+.+++..+.. ++ .+..+||+.+..++....+.+++ .+|+|+|+- +..-+. +.
T Consensus 97 ~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~ 174 (1054)
T 1gku_B 97 LKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELG 174 (1054)
T ss_dssp TTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSC
T ss_pred hcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhc
Confidence 4567999999999999998888763 35 78999999999998888888877 899999972 222221 45
Q ss_pred ccceEE
Q 016983 155 NVDLII 160 (379)
Q Consensus 155 ~v~~VI 160 (379)
++++||
T Consensus 175 ~l~~lV 180 (1054)
T 1gku_B 175 HFDFIF 180 (1054)
T ss_dssp CCSEEE
T ss_pred cCCEEE
Confidence 677766
No 95
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=77.23 E-value=7.3 Score=33.51 Aligned_cols=85 Identities=18% Similarity=0.188 Sum_probs=48.8
Q ss_pred CccHHHH-HHHHHHHH---cCCCcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEE
Q 016983 71 ATSKRTI-LSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVL 141 (379)
Q Consensus 71 ~~~k~~~-L~~ll~~~---~~~~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iL 141 (379)
...|... +..++... ..+.++||.++++.-+.++++.+.. ++.+..++|+.+..+....+ . ..+|+
T Consensus 61 GsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~--~~~ii 135 (224)
T 1qde_A 61 GTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL---R--DAQIV 135 (224)
T ss_dssp TSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------C---T--TCSEE
T ss_pred CCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcC---C--CCCEE
Confidence 3456654 33444433 2346899999999999888887753 56788999997765544332 2 26899
Q ss_pred Eecccc------ccCCCCCccceEE
Q 016983 142 VATDVA------ARGLDIPNVDLII 160 (379)
Q Consensus 142 VaTdv~------~rGiDip~v~~VI 160 (379)
|+|+-. ....+..++++||
T Consensus 136 v~Tp~~l~~~~~~~~~~~~~~~~iV 160 (224)
T 1qde_A 136 VGTPGRVFDNIQRRRFRTDKIKMFI 160 (224)
T ss_dssp EECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred EECHHHHHHHHHhCCcchhhCcEEE
Confidence 999632 2334555566555
No 96
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=77.04 E-value=5 Score=35.52 Aligned_cols=68 Identities=18% Similarity=0.192 Sum_probs=47.4
Q ss_pred CcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecccc------ccCCCCCccc
Q 016983 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPNVD 157 (379)
Q Consensus 89 ~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~------~rGiDip~v~ 157 (379)
.++||.|+|+.-+.++++.+.. ++.+..++|+.+.......+ . ...+|+|+|+-. ...+++.+++
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~-~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 176 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV---Q-MGCHLLVATPGRLVDFIEKNKISLEFCK 176 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH---S-SCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh---C-CCCCEEEECHHHHHHHHHcCCCChhhCC
Confidence 5899999999999988887753 46788899988766544433 2 356899999732 1224556666
Q ss_pred eEE
Q 016983 158 LII 160 (379)
Q Consensus 158 ~VI 160 (379)
+||
T Consensus 177 ~lV 179 (253)
T 1wrb_A 177 YIV 179 (253)
T ss_dssp EEE
T ss_pred EEE
Confidence 655
No 97
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=75.80 E-value=5.9 Score=37.13 Aligned_cols=70 Identities=17% Similarity=0.242 Sum_probs=52.3
Q ss_pred CCcEEEEecccccHHHHHHHHhc------CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecccc------ccCCCCCc
Q 016983 88 GGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPN 155 (379)
Q Consensus 88 ~~~~IIF~~t~~~~~~l~~~L~~------~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~------~rGiDip~ 155 (379)
+.++||.|+++.-+++++..+.. ++.+..++|+.+.......+. .+..+|+|+|.-. ...++..+
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK---KNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHH---HSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHh---cCCCCEEEECHHHHHHHHHcCCccccc
Confidence 45899999999999988877653 577899999998776655443 4567899999632 23356778
Q ss_pred cceEE
Q 016983 156 VDLII 160 (379)
Q Consensus 156 v~~VI 160 (379)
+++||
T Consensus 153 ~~~vV 157 (391)
T 1xti_A 153 IKHFI 157 (391)
T ss_dssp CSEEE
T ss_pred cCEEE
Confidence 88777
No 98
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=75.05 E-value=15 Score=31.93 Aligned_cols=54 Identities=15% Similarity=0.207 Sum_probs=40.0
Q ss_pred CCCcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecc
Q 016983 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (379)
Q Consensus 87 ~~~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTd 145 (379)
.+.++||.++|+.-+..+++.+.. ++.+..+||+.+.......+ +..+|+|+|.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp 154 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTP 154 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECH
Confidence 356899999999999988888763 37788999997765544433 3468999996
No 99
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=72.63 E-value=15 Score=34.92 Aligned_cols=69 Identities=25% Similarity=0.352 Sum_probs=52.6
Q ss_pred CCCcEEEEecccccHHHHHHHHhc--CC---cEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccc------cCCCCCc
Q 016983 87 KGGKTIVFTQTKRDADEVSLALTS--II---ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA------RGLDIPN 155 (379)
Q Consensus 87 ~~~~~IIF~~t~~~~~~l~~~L~~--~~---~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~------rGiDip~ 155 (379)
.+.++||.|+++.-+...+..+.. +. .+..+||+.+..++..... ..+|+|+|.-.. ..+...+
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~~ 125 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLED 125 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTTS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchhh
Confidence 578999999999999988888875 33 7899999999887765553 357999996321 1356677
Q ss_pred cceEE
Q 016983 156 VDLII 160 (379)
Q Consensus 156 v~~VI 160 (379)
+++||
T Consensus 126 ~~~vI 130 (494)
T 1wp9_A 126 VSLIV 130 (494)
T ss_dssp CSEEE
T ss_pred ceEEE
Confidence 78777
No 100
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=70.64 E-value=9.4 Score=34.15 Aligned_cols=70 Identities=17% Similarity=0.283 Sum_probs=49.6
Q ss_pred CCCcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccc-----cc--cCCCCC
Q 016983 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AA--RGLDIP 154 (379)
Q Consensus 87 ~~~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv-----~~--rGiDip 154 (379)
.+.++||.++|+.-+.+.+..+.. +..+..++|+.........+. .+ .+|+|+|+- +. .++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLG---NG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHH---HC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhc---CC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 356899999999999998888764 467788999987765544332 23 789999951 22 235666
Q ss_pred ccceEE
Q 016983 155 NVDLII 160 (379)
Q Consensus 155 ~v~~VI 160 (379)
++++||
T Consensus 201 ~l~~lV 206 (262)
T 3ly5_A 201 NLQCLV 206 (262)
T ss_dssp TCCEEE
T ss_pred cCCEEE
Confidence 777665
No 101
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=69.79 E-value=7.9 Score=37.47 Aligned_cols=69 Identities=12% Similarity=0.186 Sum_probs=51.4
Q ss_pred CCcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccc-----cccC-CCCCcc
Q 016983 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AARG-LDIPNV 156 (379)
Q Consensus 88 ~~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv-----~~rG-iDip~v 156 (379)
+.++||.++|++-+.++++.+.. ++.+..+||+.+...+...+. ...+|+|+|+- +.++ +++.++
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~----~~~~Ivv~Tp~~l~~~l~~~~~~l~~~ 204 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECIT----RGCHVVIATPGRLLDFVDRTFITFEDT 204 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHT----TCCSEEEECHHHHHHHHHTTSCCCTTC
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhh----cCCCEEEEChHHHHHHHHhCCcccccC
Confidence 45899999999999998887763 467888999998776554443 34789999962 2333 567788
Q ss_pred ceEE
Q 016983 157 DLII 160 (379)
Q Consensus 157 ~~VI 160 (379)
++||
T Consensus 205 ~~lV 208 (434)
T 2db3_A 205 RFVV 208 (434)
T ss_dssp CEEE
T ss_pred CeEE
Confidence 8777
No 102
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=69.42 E-value=10 Score=35.84 Aligned_cols=68 Identities=18% Similarity=0.177 Sum_probs=50.0
Q ss_pred CcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccc-----ccc-CCCCCccc
Q 016983 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AAR-GLDIPNVD 157 (379)
Q Consensus 89 ~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv-----~~r-GiDip~v~ 157 (379)
.++||.++|+.-+.++++.+.. ++.+..+||+.+..+....+. ...+|+|+|+- +.. .+++.+++
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 177 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLE----RGCHLLVATPGRLVDMMERGKIGLDFCK 177 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHT----TCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhh----CCCCEEEEChHHHHHHHHcCCcChhhCc
Confidence 4699999999999988887753 578899999988776554442 34689999972 222 35667778
Q ss_pred eEE
Q 016983 158 LII 160 (379)
Q Consensus 158 ~VI 160 (379)
+||
T Consensus 178 ~iV 180 (417)
T 2i4i_A 178 YLV 180 (417)
T ss_dssp EEE
T ss_pred EEE
Confidence 777
No 103
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=67.65 E-value=4.1 Score=35.86 Aligned_cols=86 Identities=17% Similarity=0.290 Sum_probs=52.5
Q ss_pred ccHHHH-HHHHHHHHc----CCCcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEE
Q 016983 72 TSKRTI-LSDLITVYA----KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVL 141 (379)
Q Consensus 72 ~~k~~~-L~~ll~~~~----~~~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iL 141 (379)
..|..+ +..++.... .+.++||.++|+.-+.++++.+.. ++.+..+||+..... .......+..+|+
T Consensus 77 sGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~ 153 (245)
T 3dkp_A 77 SGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDIL 153 (245)
T ss_dssp SCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEE
T ss_pred CcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEE
Confidence 456543 333444332 345799999999999998888763 466777777632221 1223345667899
Q ss_pred Eeccc-----ccc---CCCCCccceEE
Q 016983 142 VATDV-----AAR---GLDIPNVDLII 160 (379)
Q Consensus 142 VaTdv-----~~r---GiDip~v~~VI 160 (379)
|+|+- +.+ .+++.++++||
T Consensus 154 v~Tp~~l~~~l~~~~~~~~~~~~~~lV 180 (245)
T 3dkp_A 154 VTTPNRLIYLLKQDPPGIDLASVEWLV 180 (245)
T ss_dssp EECHHHHHHHHHSSSCSCCCTTCCEEE
T ss_pred EECHHHHHHHHHhCCCCcccccCcEEE
Confidence 99952 112 35666666665
No 104
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=67.47 E-value=16 Score=33.09 Aligned_cols=69 Identities=17% Similarity=0.262 Sum_probs=50.6
Q ss_pred CCCcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecccc-----c-cCCCCCc
Q 016983 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA-----A-RGLDIPN 155 (379)
Q Consensus 87 ~~~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~-----~-rGiDip~ 155 (379)
.+.++||.++++.-+++.++.+.. +..+..+||+.+.......+. ..+|+|+|+-. . ..++..+
T Consensus 55 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 129 (337)
T 2z0m_A 55 LGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-----NADIVVATPGRLLDLWSKGVIDLSS 129 (337)
T ss_dssp HTCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-----TCSEEEECHHHHHHHHHTTSCCGGG
T ss_pred hcCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-----CCCEEEECHHHHHHHHHcCCcchhh
Confidence 367999999999999998888863 467889999998776554443 26799999632 2 2345667
Q ss_pred cceEE
Q 016983 156 VDLII 160 (379)
Q Consensus 156 v~~VI 160 (379)
+++||
T Consensus 130 ~~~iV 134 (337)
T 2z0m_A 130 FEIVI 134 (337)
T ss_dssp CSEEE
T ss_pred CcEEE
Confidence 77766
No 105
>2fph_X YLMH; division protein, bacteria, GRAM+, DNA binding protein; 1.70A {Streptococcus pneumoniae}
Probab=65.93 E-value=2.9 Score=35.37 Aligned_cols=73 Identities=8% Similarity=0.064 Sum_probs=49.5
Q ss_pred CeEEEEEeeCCcccC-CCCChhHHHHHHhhhCCCCCCccccEEeeeCCceeeeecchhhHHHHhhhhcccCcceEeee
Q 016983 285 GWVTLQLTRDSAFSR-GFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVCIDTVILLYFYASVRLGLFNTKSVIWLT 361 (379)
Q Consensus 285 ~~~~l~~~~g~~~~~-~~~~~~~i~~~~~~~~~~~~~~ig~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (379)
+.+-+.++... + +.++.+|++|+|.++.|+..+.+|+|-+.++.- ++.|..=-..+-...++..++-+|+...
T Consensus 84 ~i~~l~i~~~~---kF~~l~Hrd~LGaLm~~LGI~Re~iGDI~v~~~~~-qv~v~~~i~~~i~~nl~kIg~~~V~~~~ 157 (165)
T 2fph_X 84 EISLQEIVYSN---KFEYLTHAKILGTVINQLGIERKLFGDILVDEERA-QIMINQQFLLLFQDGLKKIGRIPVSLEE 157 (165)
T ss_dssp CEEEEEEESCC---CCHHHHHHHHHSCSSSCCCCCGGGEEEEECSSSCC-EEEEEGGGHHHHHHHCCEETTEECEEEE
T ss_pred ceEEEEEeccc---ccccCCHHHHHHHHHHhcCCCHhhcCCEEEECCEE-EEEEcHHHHHHHHHHHhhccCeeEEEEE
Confidence 35666675433 2 458899999999999999999999999977653 3333222222334467777777777654
No 106
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=65.27 E-value=13 Score=34.71 Aligned_cols=69 Identities=17% Similarity=0.212 Sum_probs=50.8
Q ss_pred CCCcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecccc------ccCCCCCc
Q 016983 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPN 155 (379)
Q Consensus 87 ~~~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~------~rGiDip~ 155 (379)
.+.++||.|+++.-+.++++.+.. ++.+..+||+.+..+....+. ..+|+|+|.-. ...++..+
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 356999999999999888887753 477899999998877665554 45799999532 22345667
Q ss_pred cceEE
Q 016983 156 VDLII 160 (379)
Q Consensus 156 v~~VI 160 (379)
+++||
T Consensus 163 ~~~vI 167 (394)
T 1fuu_A 163 IKMFI 167 (394)
T ss_dssp CCEEE
T ss_pred CcEEE
Confidence 77777
No 107
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=64.13 E-value=5.1 Score=30.81 Aligned_cols=43 Identities=12% Similarity=0.112 Sum_probs=33.4
Q ss_pred HHHHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCC
Q 016983 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDIS 122 (379)
Q Consensus 80 ~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~ 122 (379)
..+....++.++++||.+-..+...+..|.. |+.+..+.||+.
T Consensus 47 ~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 47 EKWKILERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp HHGGGSCTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred HHHHhCCCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 3333445567999999998888888888875 788999999864
No 108
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=61.08 E-value=60 Score=29.44 Aligned_cols=84 Identities=21% Similarity=0.272 Sum_probs=56.0
Q ss_pred ccHHHHHH-HHHHHH--cCCCcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEe
Q 016983 72 TSKRTILS-DLITVY--AKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVA 143 (379)
Q Consensus 72 ~~k~~~L~-~ll~~~--~~~~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVa 143 (379)
..|..... .++... .++.++||.|+++.-++++++.+.. ++.+..++|+.........+. ..+|+|+
T Consensus 55 sGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~iiv~ 129 (367)
T 1hv8_A 55 SGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-----NANIVVG 129 (367)
T ss_dssp SSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-----TCSEEEE
T ss_pred ChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-----CCCEEEe
Confidence 45654432 333332 2356899999999999888888763 467888999988766554443 3679999
Q ss_pred cccc------ccCCCCCccceEE
Q 016983 144 TDVA------ARGLDIPNVDLII 160 (379)
Q Consensus 144 Tdv~------~rGiDip~v~~VI 160 (379)
|.-. ...+++.++++||
T Consensus 130 T~~~l~~~~~~~~~~~~~~~~iI 152 (367)
T 1hv8_A 130 TPGRILDHINRGTLNLKNVKYFI 152 (367)
T ss_dssp CHHHHHHHHHTTCSCTTSCCEEE
T ss_pred cHHHHHHHHHcCCcccccCCEEE
Confidence 9632 1235567777777
No 109
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=60.73 E-value=5.4 Score=34.43 Aligned_cols=69 Identities=13% Similarity=0.256 Sum_probs=45.3
Q ss_pred CCcEEEEecccccHHHHHHHHhc---------CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccc-----ccc-CCC
Q 016983 88 GGKTIVFTQTKRDADEVSLALTS---------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AAR-GLD 152 (379)
Q Consensus 88 ~~~~IIF~~t~~~~~~l~~~L~~---------~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv-----~~r-GiD 152 (379)
+.++||.|+|+.-+.++++.+.. ++.+..++|+.+.... .+.+. ...+|+|+|+- +.+ .++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKA---LEKLN-VQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHT---TCCCS-SCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHH---HHHcC-CCCCEEEeCHHHHHHHHHcCCCC
Confidence 46899999999999888877652 4677888998754432 22332 35689999952 222 244
Q ss_pred CCccceEE
Q 016983 153 IPNVDLII 160 (379)
Q Consensus 153 ip~v~~VI 160 (379)
..++++||
T Consensus 148 ~~~~~~lV 155 (219)
T 1q0u_A 148 VHTAHILV 155 (219)
T ss_dssp GGGCCEEE
T ss_pred cCcceEEE
Confidence 55556555
No 110
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=59.65 E-value=11 Score=28.74 Aligned_cols=45 Identities=7% Similarity=0.031 Sum_probs=33.7
Q ss_pred HHHHHHHcCCCcEEEEecccccHHHHHHHHhc-CC-cEEEeeCCCCH
Q 016983 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDISQ 123 (379)
Q Consensus 79 ~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~-~v~~lhg~m~~ 123 (379)
...+....++.+++|||.+-..+...+..|.. ++ .+..+.|++..
T Consensus 49 ~~~~~~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 95 (108)
T 1gmx_A 49 GAFMRDNDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEA 95 (108)
T ss_dssp HHHHHHSCTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred HHHHHhcCCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHH
Confidence 33444445678999999998888888888875 77 48889998743
No 111
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=59.10 E-value=8.7 Score=30.13 Aligned_cols=39 Identities=13% Similarity=0.180 Sum_probs=29.9
Q ss_pred HcCC-CcEEEEe-cccccHHHHHHHHhc-CCcEEEeeCCCCH
Q 016983 85 YAKG-GKTIVFT-QTKRDADEVSLALTS-IIASEALHGDISQ 123 (379)
Q Consensus 85 ~~~~-~~~IIF~-~t~~~~~~l~~~L~~-~~~v~~lhg~m~~ 123 (379)
..+. .+++||| ++-..+...+..|.. |+.+..+.|++..
T Consensus 85 ~~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 85 LALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp HHTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred hccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 3455 7899999 576677778888874 7789999999753
No 112
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=58.54 E-value=33 Score=31.97 Aligned_cols=69 Identities=20% Similarity=0.217 Sum_probs=49.9
Q ss_pred CCcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccc-----ccc-CCCCCcc
Q 016983 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AAR-GLDIPNV 156 (379)
Q Consensus 88 ~~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv-----~~r-GiDip~v 156 (379)
+.++||.|+++.-+...++.+.. ++.+..++|+.........+ .+..+|+|+|.- +.+ ..++.++
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~T~~~l~~~~~~~~~~~~~~ 164 (400)
T 1s2m_A 89 KIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRL----NETVHILVGTPGRVLDLASRKVADLSDC 164 (400)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHT----TSCCSEEEECHHHHHHHHHTTCSCCTTC
T ss_pred CccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHh----cCCCCEEEEchHHHHHHHHhCCcccccC
Confidence 45899999999999888887763 56788899998766543322 356789999952 233 3567778
Q ss_pred ceEE
Q 016983 157 DLII 160 (379)
Q Consensus 157 ~~VI 160 (379)
++||
T Consensus 165 ~~vI 168 (400)
T 1s2m_A 165 SLFI 168 (400)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 8777
No 113
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=58.06 E-value=11 Score=37.05 Aligned_cols=69 Identities=12% Similarity=0.152 Sum_probs=46.0
Q ss_pred CCcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecccc-----ccC-C-CCCc
Q 016983 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA-----ARG-L-DIPN 155 (379)
Q Consensus 88 ~~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~-----~rG-i-Dip~ 155 (379)
+.++||.|+|+.-+......+.. ++.+..+||+.+...+...+. ...+|+|+|+-. ..+ + ++.+
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 67899999999988888877753 688999999987665433222 236799999632 222 3 5677
Q ss_pred cceEE
Q 016983 156 VDLII 160 (379)
Q Consensus 156 v~~VI 160 (379)
+++||
T Consensus 131 ~~~vV 135 (556)
T 4a2p_A 131 FTLMI 135 (556)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 88777
No 114
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=57.98 E-value=17 Score=38.75 Aligned_cols=57 Identities=11% Similarity=0.087 Sum_probs=44.9
Q ss_pred HHHHcCCCcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecc
Q 016983 82 ITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (379)
Q Consensus 82 l~~~~~~~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTd 145 (379)
+... .+..++|.|+|+.-|...++.+.. ++.+.++.|+++.++|.... ..+|+|+|+
T Consensus 119 l~aL-~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTp 180 (844)
T 1tf5_A 119 LNAL-TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTN 180 (844)
T ss_dssp HHHT-TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEH
T ss_pred HHHH-cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 3444 367899999999999888877652 68899999999988776553 258999997
No 115
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=57.38 E-value=8.5 Score=30.25 Aligned_cols=43 Identities=19% Similarity=0.158 Sum_probs=32.4
Q ss_pred HHHHHHcCCCcEEEEeccccc--HHHHHHHHhc-CCcEEEeeCCCC
Q 016983 80 DLITVYAKGGKTIVFTQTKRD--ADEVSLALTS-IIASEALHGDIS 122 (379)
Q Consensus 80 ~ll~~~~~~~~~IIF~~t~~~--~~~l~~~L~~-~~~v~~lhg~m~ 122 (379)
..+....++.+++|||.+-.. +...+..|.. |+.+..+.||+.
T Consensus 63 ~~~~~l~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 63 TRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp HHGGGSCTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred HHHhcCCCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 333344456789999999877 7888888875 888888889864
No 116
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=56.60 E-value=9.6 Score=37.43 Aligned_cols=69 Identities=13% Similarity=0.225 Sum_probs=48.4
Q ss_pred CCcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecccc-----ccC-C-CCCc
Q 016983 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA-----ARG-L-DIPN 155 (379)
Q Consensus 88 ~~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~-----~rG-i-Dip~ 155 (379)
+.++||.|+|+.-+...+..+.. ++.+..+||+.+...+...+. +..+|+|+|+-. ..+ + ++.+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 67899999999888887777653 688999999986554432221 246799999632 222 3 5667
Q ss_pred cceEE
Q 016983 156 VDLII 160 (379)
Q Consensus 156 v~~VI 160 (379)
+++||
T Consensus 128 ~~~vV 132 (555)
T 3tbk_A 128 FTLMI 132 (555)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 78777
No 117
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=54.92 E-value=24 Score=33.14 Aligned_cols=85 Identities=15% Similarity=0.249 Sum_probs=57.0
Q ss_pred ccHHHHH-HHHHHHH---cCCCcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEE
Q 016983 72 TSKRTIL-SDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLV 142 (379)
Q Consensus 72 ~~k~~~L-~~ll~~~---~~~~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLV 142 (379)
..|..+. ..++... ..+.++||.|+|+.-+.++++.+.. ++.+..++|+.+..+....+. ...+|+|
T Consensus 85 sGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~ivv 160 (410)
T 2j0s_A 85 TGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD----YGQHVVA 160 (410)
T ss_dssp SSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHH----HCCSEEE
T ss_pred CCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhh----cCCCEEE
Confidence 4566433 3333332 2457999999999999988887753 467888999988776555443 2347999
Q ss_pred ecc-----cccc-CCCCCccceEE
Q 016983 143 ATD-----VAAR-GLDIPNVDLII 160 (379)
Q Consensus 143 aTd-----v~~r-GiDip~v~~VI 160 (379)
+|+ .+.+ .++..++++||
T Consensus 161 ~Tp~~l~~~l~~~~~~~~~~~~vV 184 (410)
T 2j0s_A 161 GTPGRVFDMIRRRSLRTRAIKMLV 184 (410)
T ss_dssp ECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred cCHHHHHHHHHhCCccHhheeEEE
Confidence 995 2333 35667778777
No 118
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=54.55 E-value=21 Score=37.96 Aligned_cols=53 Identities=9% Similarity=-0.019 Sum_probs=43.0
Q ss_pred CCCcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecc
Q 016983 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (379)
Q Consensus 87 ~~~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTd 145 (379)
.+.+++|.|+|+.-|...++.+.. ++.+.++.|+++...|.... ..+|+|+|+
T Consensus 114 ~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTp 171 (853)
T 2fsf_A 114 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTN 171 (853)
T ss_dssp TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECC
Confidence 467899999999988888877652 68899999999987766544 268999997
No 119
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=54.52 E-value=7.9 Score=30.69 Aligned_cols=43 Identities=14% Similarity=0.147 Sum_probs=32.4
Q ss_pred HHHHHHcCCCcEEEEecccccHHHHHHHHhc-CCc-EEEeeCCCC
Q 016983 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 122 (379)
Q Consensus 80 ~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~-v~~lhg~m~ 122 (379)
.+.....++.+++|||.+-..+...+..|.. ++. +..+.|++.
T Consensus 74 ~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 74 QVSSHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp HHTTTCCTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred HHHhhCCCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 3333334567999999998888888888875 774 888999974
No 120
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=53.78 E-value=16 Score=38.33 Aligned_cols=69 Identities=12% Similarity=0.145 Sum_probs=45.7
Q ss_pred CCcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccc-----cccC-C-CCCc
Q 016983 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AARG-L-DIPN 155 (379)
Q Consensus 88 ~~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv-----~~rG-i-Dip~ 155 (379)
+.++||.|+|+.-+......+.. ++.+..+||+.+...+...+. +..+|+|+|+- +.++ + ++.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 67899999999888887776653 688999999987665433322 24689999963 1222 3 5667
Q ss_pred cceEE
Q 016983 156 VDLII 160 (379)
Q Consensus 156 v~~VI 160 (379)
+++||
T Consensus 372 ~~~iV 376 (797)
T 4a2q_A 372 FTLMI 376 (797)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 78777
No 121
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=53.53 E-value=36 Score=31.82 Aligned_cols=86 Identities=14% Similarity=0.188 Sum_probs=56.3
Q ss_pred ccHHHH-HHHHHHHHc---CCCcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEE
Q 016983 72 TSKRTI-LSDLITVYA---KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLV 142 (379)
Q Consensus 72 ~~k~~~-L~~ll~~~~---~~~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLV 142 (379)
..|... +..++.... .+.++||.++++.-+..+++.+.. +..+..++|+...... .+.+..+..+|+|
T Consensus 88 sGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv 164 (414)
T 3eiq_A 88 TGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPHIIV 164 (414)
T ss_dssp SSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCSEEE
T ss_pred CcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCCEEE
Confidence 345543 334444332 356899999999999888888763 4567778888765544 3344557789999
Q ss_pred eccc-----ccc-CCCCCccceEE
Q 016983 143 ATDV-----AAR-GLDIPNVDLII 160 (379)
Q Consensus 143 aTdv-----~~r-GiDip~v~~VI 160 (379)
+|+- +.+ .++...+++||
T Consensus 165 ~T~~~l~~~l~~~~~~~~~~~~vV 188 (414)
T 3eiq_A 165 GTPGRVFDMLNRRYLSPKYIKMFV 188 (414)
T ss_dssp ECHHHHHHHHHHTSSCSTTCCEEE
T ss_pred ECHHHHHHHHHcCCcccccCcEEE
Confidence 9952 223 34566677766
No 122
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=53.36 E-value=6.6 Score=30.10 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=30.5
Q ss_pred HcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCC
Q 016983 85 YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDI 121 (379)
Q Consensus 85 ~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m 121 (379)
+.++.++++||.+-..+...+..|.. |+.+..+.||+
T Consensus 53 l~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 53 FNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CCTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred hcCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 34577899999998888888888875 88888888885
No 123
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=53.25 E-value=16 Score=40.11 Aligned_cols=68 Identities=19% Similarity=0.170 Sum_probs=50.9
Q ss_pred HHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecc-----ccccCC-CCC
Q 016983 82 ITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARGL-DIP 154 (379)
Q Consensus 82 l~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTd-----v~~rGi-Dip 154 (379)
+.....+.++||-++|+.-+.+.+..+.. .-.+..++|+++ .++..+|+|+|+ .+.++- .+.
T Consensus 221 ~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~~l~ 289 (1108)
T 3l9o_A 221 AQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMTTEILRSMLYRGSEVMR 289 (1108)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEEHHHHHHHHHHCSSHHH
T ss_pred HHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeChHHHHHHHHcCccccc
Confidence 33334578999999999999999998875 347888999986 346688999994 444443 366
Q ss_pred ccceEE
Q 016983 155 NVDLII 160 (379)
Q Consensus 155 ~v~~VI 160 (379)
++.+||
T Consensus 290 ~l~lVV 295 (1108)
T 3l9o_A 290 EVAWVI 295 (1108)
T ss_dssp HEEEEE
T ss_pred cCCEEE
Confidence 778777
No 124
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=52.86 E-value=23 Score=37.92 Aligned_cols=58 Identities=12% Similarity=0.109 Sum_probs=45.7
Q ss_pred HHHHHcCCCcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecc
Q 016983 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (379)
Q Consensus 81 ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTd 145 (379)
++... .+..++|.|+|+.-|...++.+.. ++.+.++.|+++.++|..... .+|+++|+
T Consensus 146 ~l~aL-~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y~------~DIvygTp 208 (922)
T 1nkt_A 146 YLNAL-AGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAYN------ADITYGTN 208 (922)
T ss_dssp HHHHT-TTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHHH------SSEEEEEH
T ss_pred HHHHH-hCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhcC------CCEEEECc
Confidence 34444 367899999999988888877752 688999999999887776552 58999997
No 125
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=52.41 E-value=9.1 Score=35.17 Aligned_cols=82 Identities=9% Similarity=0.063 Sum_probs=51.9
Q ss_pred ccHHHH-HHHHHHHHc---CCCcEEEEecccccHHHHHHHHhc------CCcEEEeeCCCCHHHHHHHHhcccCCceeEE
Q 016983 72 TSKRTI-LSDLITVYA---KGGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVL 141 (379)
Q Consensus 72 ~~k~~~-L~~ll~~~~---~~~~~IIF~~t~~~~~~l~~~L~~------~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iL 141 (379)
..|..+ +..++.... ...++||.++|+.-|.+++..+.. ++.+..++|+.+.... .....+|+
T Consensus 142 sGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~Il 214 (300)
T 3fmo_B 142 TGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIV 214 (300)
T ss_dssp SSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEE
T ss_pred CCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEE
Confidence 456543 334444432 234799999999999988777652 3567777777543211 13456899
Q ss_pred Eeccccc-------cCCCCCccceEE
Q 016983 142 VATDVAA-------RGLDIPNVDLII 160 (379)
Q Consensus 142 VaTdv~~-------rGiDip~v~~VI 160 (379)
|+|+-.- ..+++.++.++|
T Consensus 215 V~TP~~l~~~l~~~~~~~l~~l~~lV 240 (300)
T 3fmo_B 215 IGTPGTVLDWCSKLKFIDPKKIKVFV 240 (300)
T ss_dssp EECHHHHHHHHTTTCCCCGGGCSEEE
T ss_pred EECHHHHHHHHHhcCCCChhhceEEE
Confidence 9997421 356777788776
No 126
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=51.31 E-value=9.7 Score=28.68 Aligned_cols=37 Identities=14% Similarity=0.088 Sum_probs=30.6
Q ss_pred cCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCC
Q 016983 86 AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDIS 122 (379)
Q Consensus 86 ~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~ 122 (379)
.++.++++||.+-..+...+..|.. ++.+..+.|++.
T Consensus 54 ~~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 4567899999998888888888875 788888888853
No 127
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=50.24 E-value=27 Score=25.04 Aligned_cols=43 Identities=16% Similarity=0.231 Sum_probs=29.9
Q ss_pred HHHHHHH--cCCCcEEEEecccccHHHHHHHHhc-CCc-EEEeeCCCC
Q 016983 79 SDLITVY--AKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 122 (379)
Q Consensus 79 ~~ll~~~--~~~~~~IIF~~t~~~~~~l~~~L~~-~~~-v~~lhg~m~ 122 (379)
...+... .++.++++||.+-..+...+..|.. ++. +..+ |++.
T Consensus 30 ~~~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 30 KERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp HHHHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred HHHHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 3344444 4567899999998888888888875 664 5556 7753
No 128
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=48.56 E-value=22 Score=36.80 Aligned_cols=82 Identities=21% Similarity=0.334 Sum_probs=55.2
Q ss_pred ccHHHHH-HHHHHHH-cCCCcEEEEecccccHHHHHHHHhc----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecc
Q 016983 72 TSKRTIL-SDLITVY-AKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (379)
Q Consensus 72 ~~k~~~L-~~ll~~~-~~~~~~IIF~~t~~~~~~l~~~L~~----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTd 145 (379)
..|.... ..++... ..+.++++.++++.-+.+.+..+.. ++.+..+||+.+...+. .+..+|+|+|+
T Consensus 50 sGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~-------~~~~~Iiv~Tp 122 (720)
T 2zj8_A 50 SGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDEW-------LGKYDIIIATA 122 (720)
T ss_dssp GCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCGG-------GGGCSEEEECH
T ss_pred cHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCccccc-------cCCCCEEEECH
Confidence 4565433 2333322 2368999999999999999998862 67899999987654431 24678999997
Q ss_pred c-----cccCCC-CCccceEE
Q 016983 146 V-----AARGLD-IPNVDLII 160 (379)
Q Consensus 146 v-----~~rGiD-ip~v~~VI 160 (379)
- +.++.. +.++++||
T Consensus 123 e~l~~~~~~~~~~l~~~~~vI 143 (720)
T 2zj8_A 123 EKFDSLLRHGSSWIKDVKILV 143 (720)
T ss_dssp HHHHHHHHHTCTTGGGEEEEE
T ss_pred HHHHHHHHcChhhhhcCCEEE
Confidence 2 223333 56778777
No 129
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=48.52 E-value=11 Score=28.62 Aligned_cols=40 Identities=15% Similarity=0.209 Sum_probs=30.9
Q ss_pred HHHcCCCcEEEEecccccHHHHHHHHhc-CCc-EEEeeCCCC
Q 016983 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 122 (379)
Q Consensus 83 ~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~-v~~lhg~m~ 122 (379)
....+..+++|||.+-..+...+..|.. ++. +..+.||+.
T Consensus 47 ~~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 47 SSLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp HHSCTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred hcCCCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 3445567899999988778888888875 774 888889864
No 130
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=48.47 E-value=1.1e+02 Score=25.10 Aligned_cols=114 Identities=11% Similarity=0.199 Sum_probs=64.3
Q ss_pred ChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHHHHHHHH-cCCCcEEEEecccccHHHHHHHHh
Q 016983 31 PSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALT 109 (379)
Q Consensus 31 p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~-~~~~~~IIF~~t~~~~~~l~~~L~ 109 (379)
|.+|.+++..++.+...+..... . -..+... ......+-...+.+.+... ...+.+.|.|++..++..+...|.
T Consensus 8 t~~Il~~An~li~~~~~~~~~~~--~--G~~p~~~-~~~~~~~e~~~i~~~I~~~~~g~~~iAVL~r~~~~~~~l~~~L~ 82 (174)
T 3dmn_A 8 TQQITDFTKEILVNGEAVTAFDR--Q--GDLPNVV-VTPNFEAGVDQVVDQLAMNDSERDTTAIIGKSLAECEALTKALK 82 (174)
T ss_dssp CHHHHHHHHTTSCC--------C--C--CCCCEEE-EESSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCcccCCCC--C--CCCCEEE-EeCCHHHHHHHHHHHHHHhccCCCcEEEEecCHHHHHHHHHHHH
Confidence 56788888888764332221111 1 1111211 1222222233333333322 125678899999999999999998
Q ss_pred c-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEEecCC
Q 016983 110 S-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL 164 (379)
Q Consensus 110 ~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~ 164 (379)
. ++++..+.++-. .+. -.|.|.|--.+.|+-+ ++||.+++
T Consensus 83 ~~gi~~~~l~~~~~---------~~~---~~v~v~t~~~~KGlEf---~~V~~~~~ 123 (174)
T 3dmn_A 83 ARGEQVTLIQTENQ---------RLA---PGVIVVPSFLAKGLEF---DAVIVWNA 123 (174)
T ss_dssp TTTCCEEECSSCC----------CCC---SSEEEEEGGGCTTCCE---EEEEEETC
T ss_pred HcCCcceeeccccc---------ccC---CCeEEEEccccCCcCC---CEEEEecC
Confidence 5 677777765431 122 3688999999999987 55565554
No 131
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=47.72 E-value=27 Score=37.60 Aligned_cols=58 Identities=12% Similarity=0.060 Sum_probs=45.7
Q ss_pred HHHHcCCCcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccc
Q 016983 82 ITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (379)
Q Consensus 82 l~~~~~~~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv 146 (379)
+... .+.+++|.|+|+.-|...+..+.. ++.+..+.|+++..+|..... .+|+++|+.
T Consensus 115 L~aL-~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay~------~DIvyGTpg 177 (997)
T 2ipc_A 115 LNAL-TGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAYL------ADVTYVTNS 177 (997)
T ss_dssp HHHT-TCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHHT------SSEEEEEHH
T ss_pred HHHH-hCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHcC------CCEEEECch
Confidence 3444 367899999999988888877652 688999999999888777653 689999963
No 132
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=47.43 E-value=8.3 Score=32.66 Aligned_cols=55 Identities=15% Similarity=0.149 Sum_probs=33.9
Q ss_pred CCcEEEEecccccHHH-HHHHHhc----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccc
Q 016983 88 GGKTIVFTQTKRDADE-VSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (379)
Q Consensus 88 ~~~~IIF~~t~~~~~~-l~~~L~~----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv 146 (379)
+.++||.|+++.-+++ +.+.+.. ++.+..++|+.+...+...+. +..+|+|+|.-
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~~ 141 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQ 141 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEHH
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECHH
Confidence 5799999999988777 5444432 578888998864332211111 24678999863
No 133
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=47.23 E-value=14 Score=27.34 Aligned_cols=36 Identities=11% Similarity=0.150 Sum_probs=29.2
Q ss_pred cCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCC
Q 016983 86 AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDIS 122 (379)
Q Consensus 86 ~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~ 122 (379)
.+ .++++||.+-..+...+..|.. ++.+..+.|++.
T Consensus 52 ~~-~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 52 PR-RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp CS-SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CC-CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 45 7899999998878888888875 777888888864
No 134
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=46.69 E-value=11 Score=28.24 Aligned_cols=37 Identities=8% Similarity=0.136 Sum_probs=30.4
Q ss_pred cCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCC
Q 016983 86 AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDIS 122 (379)
Q Consensus 86 ~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~ 122 (379)
.++.++++||.+-..+...+..|.. ++.+..+.|++.
T Consensus 54 ~~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 54 NDNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 4567899999998888888888875 788888888853
No 135
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=46.65 E-value=19 Score=37.09 Aligned_cols=82 Identities=17% Similarity=0.243 Sum_probs=55.7
Q ss_pred ccHHHHH-HHHHHHHcCCCcEEEEecccccHHHHHHHHhc----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecc-
Q 016983 72 TSKRTIL-SDLITVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD- 145 (379)
Q Consensus 72 ~~k~~~L-~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTd- 145 (379)
..|.... ..++.....+.++++.++++.-+.+.+..+.. +..+..++|+....++ ..+..+|+|+|+
T Consensus 51 sGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-------~~~~~~Iiv~Tpe 123 (702)
T 2p6r_A 51 AGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE-------HLGDCDIIVTTSE 123 (702)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS-------CSTTCSEEEEEHH
T ss_pred cHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh-------hccCCCEEEECHH
Confidence 3454433 33344433478999999999999999988842 5789999998765432 124688999996
Q ss_pred ----ccccCCC-CCccceEE
Q 016983 146 ----VAARGLD-IPNVDLII 160 (379)
Q Consensus 146 ----v~~rGiD-ip~v~~VI 160 (379)
.+.++.. +.++++||
T Consensus 124 ~l~~~l~~~~~~l~~~~~vI 143 (702)
T 2p6r_A 124 KADSLIRNRASWIKAVSCLV 143 (702)
T ss_dssp HHHHHHHTTCSGGGGCCEEE
T ss_pred HHHHHHHcChhHHhhcCEEE
Confidence 2333333 66788877
No 136
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=44.17 E-value=33 Score=27.55 Aligned_cols=37 Identities=8% Similarity=0.013 Sum_probs=28.6
Q ss_pred cCCCcEEEEecccccHHHHHHHHhc-CC-cEEEeeCCCC
Q 016983 86 AKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDIS 122 (379)
Q Consensus 86 ~~~~~~IIF~~t~~~~~~l~~~L~~-~~-~v~~lhg~m~ 122 (379)
.++.++||||.+-..+...+..|.. ++ .+..+.|++.
T Consensus 78 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 78 QHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp ---CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 3467899999998888888888875 77 5889999974
No 137
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=41.80 E-value=25 Score=28.12 Aligned_cols=38 Identities=16% Similarity=0.133 Sum_probs=31.1
Q ss_pred HcCCCcEEEEecccccHHHHHHHHhc-CC-cEEEeeCCCC
Q 016983 85 YAKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDIS 122 (379)
Q Consensus 85 ~~~~~~~IIF~~t~~~~~~l~~~L~~-~~-~v~~lhg~m~ 122 (379)
..++.+++|||.+-..+...+..|.. |+ .+..+.||+.
T Consensus 79 l~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 79 LDPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp CCTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred CCCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 34567999999998888888888875 77 5888999964
No 138
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=40.64 E-value=7.5 Score=39.94 Aligned_cols=68 Identities=18% Similarity=0.258 Sum_probs=45.3
Q ss_pred CcEEEEecccccHHHH-HHHHhc----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccc------------cCC
Q 016983 89 GKTIVFTQTKRDADEV-SLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA------------RGL 151 (379)
Q Consensus 89 ~~~IIF~~t~~~~~~l-~~~L~~----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~------------rGi 151 (379)
+++||.++++.-+... +..+.. .+.+..+||+.+..++...+. +..+|+|+|+-.- ..+
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~ 132 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAGV 132 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------CC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccccccce
Confidence 7899999999888888 777663 279999999987654333332 4678999996322 234
Q ss_pred CCCccceEE
Q 016983 152 DIPNVDLII 160 (379)
Q Consensus 152 Dip~v~~VI 160 (379)
...++++||
T Consensus 133 ~~~~~~lvV 141 (699)
T 4gl2_A 133 QLSDFSLII 141 (699)
T ss_dssp CGGGCSEEE
T ss_pred ecccCcEEE
Confidence 667788777
No 139
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=39.56 E-value=27 Score=34.14 Aligned_cols=82 Identities=12% Similarity=0.151 Sum_probs=54.0
Q ss_pred ccHHHHHHHHHHH-H-cCCCcEEEEecccccHHHHHHHHhcC-----CcEEEeeCCCCHHHHHHHHhcccCCceeEEEec
Q 016983 72 TSKRTILSDLITV-Y-AKGGKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLVAT 144 (379)
Q Consensus 72 ~~k~~~L~~ll~~-~-~~~~~~IIF~~t~~~~~~l~~~L~~~-----~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaT 144 (379)
..|.......+.. . ...+++||.|+++.-++...+.+... ..+..+||+.+..++ ..+..+|+|+|
T Consensus 139 sGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~~~~~~I~i~T 211 (510)
T 2oca_A 139 AGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK-------YKNDAPVVVGT 211 (510)
T ss_dssp TTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG-------GCTTCSEEEEE
T ss_pred CCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc-------cccCCcEEEEe
Confidence 4565544333322 2 23359999999999999888888642 367889999876553 35678999999
Q ss_pred cc-cccC--CCCCccceEE
Q 016983 145 DV-AARG--LDIPNVDLII 160 (379)
Q Consensus 145 dv-~~rG--iDip~v~~VI 160 (379)
.- +.+. ..+.++++||
T Consensus 212 ~~~l~~~~~~~~~~~~liI 230 (510)
T 2oca_A 212 WQTVVKQPKEWFSQFGMMM 230 (510)
T ss_dssp HHHHTTSCGGGGGGEEEEE
T ss_pred HHHHhhchhhhhhcCCEEE
Confidence 63 2222 3456677776
No 140
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=39.49 E-value=41 Score=26.50 Aligned_cols=36 Identities=6% Similarity=0.062 Sum_probs=29.5
Q ss_pred CCCcEEEEecccccHHHHHHHHhc-CCc-EEEeeCCCC
Q 016983 87 KGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 122 (379)
Q Consensus 87 ~~~~~IIF~~t~~~~~~l~~~L~~-~~~-v~~lhg~m~ 122 (379)
++.+++|||.+-..+...+..|.. ++. +..+.|++.
T Consensus 73 ~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 73 ENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 467899999998888888888875 774 888889974
No 141
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=38.43 E-value=22 Score=38.28 Aligned_cols=69 Identities=12% Similarity=0.152 Sum_probs=44.9
Q ss_pred CCcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecccc-----ccC-C-CCCc
Q 016983 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA-----ARG-L-DIPN 155 (379)
Q Consensus 88 ~~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~-----~rG-i-Dip~ 155 (379)
+.++||.++|+.-+...+..+.. ++.+..+||+.+...+...+. +..+|+|+|+-. .++ + .+.+
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~----~~~~IvI~Tp~~L~~~l~~~~~~~l~~ 371 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHH----HHCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhc----cCCCEEEecHHHHHHHHHcCccccccC
Confidence 67899999999888888777653 688999999987655322221 246799999631 222 3 4566
Q ss_pred cceEE
Q 016983 156 VDLII 160 (379)
Q Consensus 156 v~~VI 160 (379)
+++||
T Consensus 372 ~~liV 376 (936)
T 4a2w_A 372 FTLMI 376 (936)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 78777
No 142
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=36.63 E-value=41 Score=25.46 Aligned_cols=37 Identities=16% Similarity=0.212 Sum_probs=29.2
Q ss_pred cCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCC
Q 016983 86 AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDIS 122 (379)
Q Consensus 86 ~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~ 122 (379)
.++.+++|||.+-..+...+..|.. ++....+.|++.
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 4567899999998888888888875 765577889963
No 143
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=35.85 E-value=23 Score=28.63 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=29.7
Q ss_pred cCCCcEEEEeccc--ccHHHHHHHHhc-CCcEEEeeCCCC
Q 016983 86 AKGGKTIVFTQTK--RDADEVSLALTS-IIASEALHGDIS 122 (379)
Q Consensus 86 ~~~~~~IIF~~t~--~~~~~l~~~L~~-~~~v~~lhg~m~ 122 (379)
.++.+++|||.+- ..+...+..|.. |+.+..+.||+.
T Consensus 70 ~~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 70 SKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp CTTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 3567899999987 577778888874 888999999974
No 144
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=34.68 E-value=57 Score=35.34 Aligned_cols=64 Identities=20% Similarity=0.193 Sum_probs=47.0
Q ss_pred cCCCcEEEEecccccHHHHHHHHhc---CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccc-----cccC-CCCCcc
Q 016983 86 AKGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AARG-LDIPNV 156 (379)
Q Consensus 86 ~~~~~~IIF~~t~~~~~~l~~~L~~---~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv-----~~rG-iDip~v 156 (379)
..+.++||.++++.-+...+..+.. +..+..+||+.+ .++..+|+|+|+- +.++ ..+.++
T Consensus 80 ~~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~G~~~-----------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l 148 (997)
T 4a4z_A 80 RNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQ-----------INPDANCLIMTTEILRSMLYRGADLIRDV 148 (997)
T ss_dssp HTTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEECSSCE-----------ECTTSSEEEEEHHHHHHHHHHTCSGGGGE
T ss_pred hcCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEeCCCc-----------cCCCCCEEEECHHHHHHHHHhCchhhcCC
Confidence 4567899999999999999999986 468999999975 2456789999863 2223 234566
Q ss_pred ceEE
Q 016983 157 DLII 160 (379)
Q Consensus 157 ~~VI 160 (379)
++||
T Consensus 149 ~lvV 152 (997)
T 4a4z_A 149 EFVI 152 (997)
T ss_dssp EEEE
T ss_pred CEEE
Confidence 6665
No 145
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=34.34 E-value=30 Score=35.65 Aligned_cols=82 Identities=17% Similarity=0.286 Sum_probs=55.0
Q ss_pred ccHHHHH-HHHHHHH-cCCCcEEEEecccccHHHHHHHHhc----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecc
Q 016983 72 TSKRTIL-SDLITVY-AKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (379)
Q Consensus 72 ~~k~~~L-~~ll~~~-~~~~~~IIF~~t~~~~~~l~~~L~~----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTd 145 (379)
..|.... ..++... ..+.++++.++++.-+.+.+..+.. +..+..++|+....++ .+ +..+|+|+|+
T Consensus 57 sGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-----~~--~~~~Iiv~Tp 129 (715)
T 2va8_A 57 SGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDA-----WL--KNYDIIITTY 129 (715)
T ss_dssp SCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCCG-----GG--GGCSEEEECH
T ss_pred CcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchh-----hc--CCCCEEEEcH
Confidence 4565543 2333332 2467999999999999998888742 6789999998765442 11 3678999997
Q ss_pred -----ccccCCC-CCccceEE
Q 016983 146 -----VAARGLD-IPNVDLII 160 (379)
Q Consensus 146 -----v~~rGiD-ip~v~~VI 160 (379)
.+..+.. +.++++||
T Consensus 130 e~l~~~~~~~~~~l~~~~~vI 150 (715)
T 2va8_A 130 EKLDSLWRHRPEWLNEVNYFV 150 (715)
T ss_dssp HHHHHHHHHCCGGGGGEEEEE
T ss_pred HHHHHHHhCChhHhhccCEEE
Confidence 2233333 66778777
No 146
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=33.93 E-value=22 Score=28.13 Aligned_cols=37 Identities=5% Similarity=0.077 Sum_probs=29.6
Q ss_pred cCCCcEEEEecccccHHHHHHHHhc-CCc-EEEeeCCCC
Q 016983 86 AKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 122 (379)
Q Consensus 86 ~~~~~~IIF~~t~~~~~~l~~~L~~-~~~-v~~lhg~m~ 122 (379)
.++.+++|||.+-..+...+..|.. ++. +..+.|++.
T Consensus 84 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 84 QEDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp GSSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 3567899999998777788888875 774 889999864
No 147
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=33.64 E-value=96 Score=26.94 Aligned_cols=60 Identities=17% Similarity=0.076 Sum_probs=42.8
Q ss_pred CccHHHHHHHHHHHHcCCCcEEEEecccccHHHHHHHHhc-CCc-EEEeeCCCCHHHHHHHHhcccCCceeEEEecc
Q 016983 71 ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (379)
Q Consensus 71 ~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~-v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTd 145 (379)
...|..+...++... +.+++|+|+++.-+++....+.. +.. +..++|+.. ....|+|+|.
T Consensus 118 G~GKT~~a~~~~~~~--~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~-------------~~~~i~v~T~ 179 (237)
T 2fz4_A 118 GSGKTHVAMAAINEL--STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK-------------ELKPLTVSTY 179 (237)
T ss_dssp STTHHHHHHHHHHHS--CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB-------------CCCSEEEEEH
T ss_pred CCCHHHHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC-------------CcCCEEEEeH
Confidence 346766555555443 67999999999988888888876 555 788888753 2457888884
No 148
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=33.07 E-value=54 Score=35.61 Aligned_cols=78 Identities=18% Similarity=0.175 Sum_probs=52.7
Q ss_pred ccHHHHH-HHHHHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecc----
Q 016983 72 TSKRTIL-SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD---- 145 (379)
Q Consensus 72 ~~k~~~L-~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTd---- 145 (379)
..|..+. ..++.....+.++|+.++++.-+.+.+..+.. .-.+..++|+.+. +...+|+|+|+
T Consensus 112 SGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vglltGd~~~-----------~~~~~IvV~Tpe~L~ 180 (1010)
T 2xgj_A 112 AGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITI-----------NPDAGCLVMTTEILR 180 (1010)
T ss_dssp SCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHSCEEEECSSCEE-----------CTTCSEEEEEHHHHH
T ss_pred CChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhCCEEEEeCCCcc-----------CCCCCEEEEcHHHHH
Confidence 3555432 22333334578999999999999998888875 2378889998753 23568999996
Q ss_pred -ccccC-CCCCccceEE
Q 016983 146 -VAARG-LDIPNVDLII 160 (379)
Q Consensus 146 -v~~rG-iDip~v~~VI 160 (379)
.+.+| ..+.++++||
T Consensus 181 ~~L~~~~~~l~~l~lVV 197 (1010)
T 2xgj_A 181 SMLYRGSEVMREVAWVI 197 (1010)
T ss_dssp HHHHHTCTTGGGEEEEE
T ss_pred HHHHcCcchhhcCCEEE
Confidence 23333 4567778777
No 149
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=32.10 E-value=35 Score=34.82 Aligned_cols=68 Identities=12% Similarity=0.231 Sum_probs=47.1
Q ss_pred CcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccc-----cccC-C-CCCcc
Q 016983 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AARG-L-DIPNV 156 (379)
Q Consensus 89 ~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv-----~~rG-i-Dip~v 156 (379)
+++||.++|+.-+......+.. ++.+..+||+.+...+...+. ...+|+|+|+- +..| + ++.++
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIV----ENNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHH----HTCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhc----cCCCEEEECHHHHHHHHhcCcccccccc
Confidence 7899999999888877777653 678999999986533222221 23689999973 2233 3 56777
Q ss_pred ceEE
Q 016983 157 DLII 160 (379)
Q Consensus 157 ~~VI 160 (379)
++||
T Consensus 138 ~~vV 141 (696)
T 2ykg_A 138 TLMI 141 (696)
T ss_dssp SEEE
T ss_pred cEEE
Confidence 8777
No 150
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=31.04 E-value=26 Score=27.82 Aligned_cols=36 Identities=11% Similarity=0.201 Sum_probs=28.9
Q ss_pred CCCcEEEEecccccHHHHHHHHhc-CCc-EEEeeCCCC
Q 016983 87 KGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 122 (379)
Q Consensus 87 ~~~~~IIF~~t~~~~~~l~~~L~~-~~~-v~~lhg~m~ 122 (379)
++.++++||.+-..+...+..|.. ++. +..+.|++.
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 457899999998888888888875 774 888889864
No 151
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=29.88 E-value=1.9e+02 Score=29.61 Aligned_cols=82 Identities=23% Similarity=0.309 Sum_probs=57.1
Q ss_pred EcCCccHHHHHHHHHHHHcCCCcEEEEecccccHHHHHHHHhcCC---cEEEe--------------------eCCCC--
Q 016983 68 STTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSII---ASEAL--------------------HGDIS-- 122 (379)
Q Consensus 68 ~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~---~v~~l--------------------hg~m~-- 122 (379)
-+....|.-++..++... +.++||.++++..|..++..|...+ .|..+ |.+.+
T Consensus 35 g~tgs~kt~~~a~~~~~~--~~~~lvv~~~~~~A~ql~~el~~~~~~~~V~~fps~yd~~~pe~~~~~~d~~~~~~~~~~ 112 (664)
T 1c4o_A 35 GATGTGKTVTMAKVIEAL--GRPALVLAPNKILAAQLAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKDASIN 112 (664)
T ss_dssp ECTTSCHHHHHHHHHHHH--TCCEEEEESSHHHHHHHHHHHHHHCTTSEEEECCCGGGTSCCCEEEGGGTEEECCCCSCC
T ss_pred cCCCcHHHHHHHHHHHHh--CCCEEEEecCHHHHHHHHHHHHHHCCCCeEEEcCchhhccCcccccchhhhhhhhhcccC
Confidence 445567887777777654 4689999999999999999987422 23222 23332
Q ss_pred ---HHHHHHHHhcccCCceeEEEeccccccCC
Q 016983 123 ---QHQRERTLNGFRQGKFTVLVATDVAARGL 151 (379)
Q Consensus 123 ---~~~R~~~~~~F~~g~~~iLVaTdv~~rGi 151 (379)
...|..++..+.++.-.|+|+|-.+..|+
T Consensus 113 ~~i~~~R~~~l~~L~~~~~~ivV~s~~~l~~~ 144 (664)
T 1c4o_A 113 PEIERLRHSTTRSLLTRRDVIVVASVSAIYGL 144 (664)
T ss_dssp HHHHHHHHHHHHHHHHCSCEEEEEEGGGCSCC
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEecHHHHhcC
Confidence 45788888888766666888886555664
No 152
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=28.79 E-value=85 Score=30.09 Aligned_cols=74 Identities=18% Similarity=0.104 Sum_probs=50.2
Q ss_pred ccHHHHHHHHHHHHcCCCcEEEEecccccHHHHHHHHhc-CCc-EEEeeCCCCHHHHHHHHhcccCCceeEEEeccc-cc
Q 016983 72 TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDISQHQRERTLNGFRQGKFTVLVATDV-AA 148 (379)
Q Consensus 72 ~~k~~~L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~-v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv-~~ 148 (379)
..|.......+... +.++||.|+++.-+...+..+.. +.. +..+||+... ..+|+|+|.- +.
T Consensus 119 sGKT~~~l~~i~~~--~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-------------~~~Ivv~T~~~l~ 183 (472)
T 2fwr_A 119 SGKTHVAMAAINEL--STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-------------LKPLTVSTYDSAY 183 (472)
T ss_dssp SCHHHHHHHHHHHH--CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC-------------CCSEEEEEHHHHH
T ss_pred CCHHHHHHHHHHHc--CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC-------------cCCEEEEEcHHHH
Confidence 45665554444443 57999999999999988888876 667 8899998642 3578999852 22
Q ss_pred cCCC-C-CccceEE
Q 016983 149 RGLD-I-PNVDLII 160 (379)
Q Consensus 149 rGiD-i-p~v~~VI 160 (379)
.-++ + .+.++||
T Consensus 184 ~~~~~~~~~~~liI 197 (472)
T 2fwr_A 184 VNAEKLGNRFMLLI 197 (472)
T ss_dssp HTHHHHTTTCSEEE
T ss_pred HHHHHhcCCCCEEE
Confidence 2221 1 2356666
No 153
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=27.75 E-value=19 Score=35.79 Aligned_cols=69 Identities=16% Similarity=0.127 Sum_probs=46.9
Q ss_pred CcEEEEecccccHHHHHHHHhc---------CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccc-----c--CCC
Q 016983 89 GKTIVFTQTKRDADEVSLALTS---------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA-----R--GLD 152 (379)
Q Consensus 89 ~~~IIF~~t~~~~~~l~~~L~~---------~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~-----r--GiD 152 (379)
.++||.++|+.-+.+++..+.. ...+..++|+.+..... ..+..+..+|+|+|+-.- + ...
T Consensus 147 ~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~ 223 (563)
T 3i5x_A 147 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAM---NKMNKLRPNIVIATPGRLIDVLEKYSNKF 223 (563)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHH---HHHHHHCCSEEEECHHHHHHHHHHHHHHH
T ss_pred eeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHH---HHHhcCCCCEEEECcHHHHHHHHhccccc
Confidence 4899999999999988887753 24577788887654433 333345678999997422 2 234
Q ss_pred CCccceEE
Q 016983 153 IPNVDLII 160 (379)
Q Consensus 153 ip~v~~VI 160 (379)
+..+++||
T Consensus 224 ~~~~~~lV 231 (563)
T 3i5x_A 224 FRFVDYKV 231 (563)
T ss_dssp CTTCCEEE
T ss_pred cccceEEE
Confidence 56677766
No 154
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=27.53 E-value=88 Score=27.81 Aligned_cols=38 Identities=24% Similarity=0.170 Sum_probs=30.7
Q ss_pred cCCCcEEEEecccccHHHHHHHHhc-CC-cEEEeeCCCCH
Q 016983 86 AKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDISQ 123 (379)
Q Consensus 86 ~~~~~~IIF~~t~~~~~~l~~~L~~-~~-~v~~lhg~m~~ 123 (379)
.++.++|+||.+-..+...+..|.. ++ .+..+.|++..
T Consensus 228 ~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~~ 267 (280)
T 1urh_A 228 SYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSE 267 (280)
T ss_dssp CSSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC
T ss_pred CCCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHHH
Confidence 3567899999998888888888874 77 48889999753
No 155
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=27.45 E-value=19 Score=36.10 Aligned_cols=69 Identities=16% Similarity=0.133 Sum_probs=46.9
Q ss_pred CcEEEEecccccHHHHHHHHhc---------CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecccc-----cc--CCC
Q 016983 89 GKTIVFTQTKRDADEVSLALTS---------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA-----AR--GLD 152 (379)
Q Consensus 89 ~~~IIF~~t~~~~~~l~~~L~~---------~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~-----~r--GiD 152 (379)
.++||.++|+.-+.+++..+.. .+.+..++|+.+..... ..+..+..+|+|+|+-. .+ ...
T Consensus 96 ~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~ 172 (579)
T 3sqw_A 96 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAM---NKMNKLRPNIVIATPGRLIDVLEKYSNKF 172 (579)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHH---HHHHHHCCSEEEECHHHHHHHHHHHHHHH
T ss_pred CeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHH---HHHhcCCCCEEEECHHHHHHHHHhccccc
Confidence 4899999999999888877753 24577788887655433 33334557899999632 12 345
Q ss_pred CCccceEE
Q 016983 153 IPNVDLII 160 (379)
Q Consensus 153 ip~v~~VI 160 (379)
+..+++||
T Consensus 173 ~~~~~~lV 180 (579)
T 3sqw_A 173 FRFVDYKV 180 (579)
T ss_dssp CTTCCEEE
T ss_pred cccCCEEE
Confidence 66777766
No 156
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=26.83 E-value=3e+02 Score=26.99 Aligned_cols=111 Identities=12% Similarity=0.073 Sum_probs=73.9
Q ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCCcEEEEecccccHHHHHHHHhcC--CcEEEe-------eCCCC-----HHHHHH
Q 016983 63 KLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI--IASEAL-------HGDIS-----QHQRER 128 (379)
Q Consensus 63 ~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~~--~~v~~l-------hg~m~-----~~~R~~ 128 (379)
.+...-+....|.-++..+.... ++++||.|++...|..++..|... -.+..+ |...+ ..+|..
T Consensus 16 ~~~l~g~~gs~ka~~~a~l~~~~--~~p~lvv~~~~~~A~~l~~~l~~~~~~~v~~fp~~e~lpyd~~~p~~~~~~~Rl~ 93 (483)
T 3hjh_A 16 QRLLGELTGAACATLVAEIAERH--AGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLS 93 (483)
T ss_dssp EEEEECCCTTHHHHHHHHHHHHS--SSCEEEEESSHHHHHHHHHHHHHTCSSCEEECCCCCSCTTCSSCCCHHHHHHHHH
T ss_pred eEEEeCCCchHHHHHHHHHHHHh--CCCEEEEeCCHHHHHHHHHHHHhhCCCcEEEEeCcccccccccCCChHHHHHHHH
Confidence 33444555667777777777653 578999999999999999999742 123322 11111 246888
Q ss_pred HHhcccCCceeEEEeccccccCCCCC-----ccceEEecCCCCChhHHHHHH
Q 016983 129 TLNGFRQGKFTVLVATDVAARGLDIP-----NVDLIIHYELPNDPETFVHRS 175 (379)
Q Consensus 129 ~~~~F~~g~~~iLVaTdv~~rGiDip-----~v~~VI~~~~P~~~~~yiqR~ 175 (379)
++.++.+++..|+|+|-.+..+.=.| +-.+.+..+-..+.+.+.++.
T Consensus 94 ~l~~L~~~~~~ivv~sv~al~~~~~p~~~~~~~~~~l~~G~~~~~~~l~~~L 145 (483)
T 3hjh_A 94 TLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQL 145 (483)
T ss_dssp HHHHGGGCCSSEEEEEHHHHHBCCCCHHHHHHTCEEEETTCCCCHHHHHHHH
T ss_pred HHHHHHhCCCCEEEEEHHHHhhcCCCHHHHhhCeEEEECCCCcCHHHHHHHH
Confidence 89988888888998885554443333 224566777777888777764
No 157
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=26.09 E-value=1.7e+02 Score=28.04 Aligned_cols=83 Identities=8% Similarity=0.037 Sum_probs=51.1
Q ss_pred CccHHHH-HHHHHHHHc---CCCcEEEEecccccHHHHHHHHhc------CCcEEEeeCCCCHHHHHHHHhcccCCceeE
Q 016983 71 ATSKRTI-LSDLITVYA---KGGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTV 140 (379)
Q Consensus 71 ~~~k~~~-L~~ll~~~~---~~~~~IIF~~t~~~~~~l~~~L~~------~~~v~~lhg~m~~~~R~~~~~~F~~g~~~i 140 (379)
...|..+ +..++.... ...++||.++|+.-+.+++..+.. ++.+....++.... .-.....+|
T Consensus 141 GsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~I 213 (479)
T 3fmp_B 141 GTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE-------RGQKISEQI 213 (479)
T ss_dssp SSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCC-------TTCCCCCSE
T ss_pred CCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccc-------ccccCCCCE
Confidence 3457654 333443332 223899999999999888766642 35566666553321 112334589
Q ss_pred EEeccccc-------cCCCCCccceEE
Q 016983 141 LVATDVAA-------RGLDIPNVDLII 160 (379)
Q Consensus 141 LVaTdv~~-------rGiDip~v~~VI 160 (379)
+|+|+-.- ..+++.++.+||
T Consensus 214 vv~Tp~~l~~~l~~~~~~~~~~~~~iV 240 (479)
T 3fmp_B 214 VIGTPGTVLDWCSKLKFIDPKKIKVFV 240 (479)
T ss_dssp EEECHHHHHHHHTTSCCCCGGGCCEEE
T ss_pred EEECchHHHHHHHhcCCcCcccCCEEE
Confidence 99997433 357778888877
No 158
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=25.84 E-value=92 Score=32.15 Aligned_cols=66 Identities=20% Similarity=0.093 Sum_probs=48.6
Q ss_pred CCCcEEEEecccccHHHHHHHHhc--CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccc---cccCCCCCccceEEe
Q 016983 87 KGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV---AARGLDIPNVDLIIH 161 (379)
Q Consensus 87 ~~~~~IIF~~t~~~~~~l~~~L~~--~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv---~~rGiDip~v~~VI~ 161 (379)
.+.++||-++|+.-|.++++.+.. +..+...+|+.. ..+..+|+|+|+- ....++..++++||.
T Consensus 256 ~g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~-----------~~~~~~IlV~TPGrLl~~~~l~l~~l~~lVl 324 (666)
T 3o8b_A 256 QGYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRT-----------ITTGAPVTYSTYGKFLADGGCSGGAYDIIIC 324 (666)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCE-----------ECCCCSEEEEEHHHHHHTTSCCTTSCSEEEE
T ss_pred CCCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEe-----------ccCCCCEEEECcHHHHhCCCcccCcccEEEE
Confidence 456999999999999999888764 556677777743 4567899999973 233466777888775
Q ss_pred cC
Q 016983 162 YE 163 (379)
Q Consensus 162 ~~ 163 (379)
=.
T Consensus 325 DE 326 (666)
T 3o8b_A 325 DE 326 (666)
T ss_dssp TT
T ss_pred cc
Confidence 33
No 159
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=24.66 E-value=1.6e+02 Score=27.16 Aligned_cols=82 Identities=9% Similarity=0.036 Sum_probs=51.5
Q ss_pred ccHHHH-HHHHHHHHc---CCCcEEEEecccccHHHHHHHHhc------CCcEEEeeCCCCHHHHHHHHhcccCCceeEE
Q 016983 72 TSKRTI-LSDLITVYA---KGGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVL 141 (379)
Q Consensus 72 ~~k~~~-L~~ll~~~~---~~~~~IIF~~t~~~~~~l~~~L~~------~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iL 141 (379)
..|..+ +..++.... ...++||.++++.-+.+++..+.. +..+...+|+.... .......+|+
T Consensus 75 sGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~iv 147 (412)
T 3fht_A 75 TGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE-------RGQKISEQIV 147 (412)
T ss_dssp SCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCC-------TTCCCCCSEE
T ss_pred chHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchh-------hhhcCCCCEE
Confidence 456544 333444332 234899999999999988777653 35666777664422 1224456899
Q ss_pred Eeccccc-------cCCCCCccceEE
Q 016983 142 VATDVAA-------RGLDIPNVDLII 160 (379)
Q Consensus 142 VaTdv~~-------rGiDip~v~~VI 160 (379)
|+|+-.- ..+++.++++||
T Consensus 148 v~T~~~l~~~~~~~~~~~~~~~~~iV 173 (412)
T 3fht_A 148 IGTPGTVLDWCSKLKFIDPKKIKVFV 173 (412)
T ss_dssp EECHHHHHHHHTTSCSSCGGGCCEEE
T ss_pred EECchHHHHHHHhcCCcChhhCcEEE
Confidence 9996321 345667788777
No 160
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=24.50 E-value=80 Score=28.94 Aligned_cols=66 Identities=14% Similarity=0.184 Sum_probs=45.8
Q ss_pred CCCcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecccc------ccCCCCCc
Q 016983 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPN 155 (379)
Q Consensus 87 ~~~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~------~rGiDip~ 155 (379)
.+.++||.++++.-+.+.++.+.. ++.+..++|+.... ......+|+|+|+-. ...+++.+
T Consensus 74 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 145 (395)
T 3pey_A 74 ASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEK--------NKQINAQVIVGTPGTVLDLMRRKLMQLQK 145 (395)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCT--------TSCBCCSEEEECHHHHHHHHHTTCBCCTT
T ss_pred CCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhh--------hccCCCCEEEEcHHHHHHHHHcCCccccc
Confidence 356899999999999988888763 35667777664321 123457899999632 33456778
Q ss_pred cceEE
Q 016983 156 VDLII 160 (379)
Q Consensus 156 v~~VI 160 (379)
+++||
T Consensus 146 ~~~iI 150 (395)
T 3pey_A 146 IKIFV 150 (395)
T ss_dssp CCEEE
T ss_pred CCEEE
Confidence 88777
No 161
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=23.89 E-value=33 Score=27.52 Aligned_cols=38 Identities=16% Similarity=0.215 Sum_probs=29.4
Q ss_pred HcCCCcEEEEecccccHHHHHHHHhc-CCc-EEEeeCCCC
Q 016983 85 YAKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 122 (379)
Q Consensus 85 ~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~-v~~lhg~m~ 122 (379)
..+..+++|||.+-..+...+..|.. |+. +..+.||+.
T Consensus 53 l~~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 92 (141)
T 3ilm_A 53 LEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 92 (141)
T ss_dssp SCTTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHH
T ss_pred CCCCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 34567899999987778888888875 774 888888864
No 162
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=22.67 E-value=2.3e+02 Score=29.56 Aligned_cols=59 Identities=15% Similarity=0.172 Sum_probs=39.6
Q ss_pred cCCCcEEEEecccccHHHHHHHHhc---CCcEEEeeCCCCHHHHHHHHhcc--------cCCceeEEEecc
Q 016983 86 AKGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGF--------RQGKFTVLVATD 145 (379)
Q Consensus 86 ~~~~~~IIF~~t~~~~~~l~~~L~~---~~~v~~lhg~m~~~~R~~~~~~F--------~~g~~~iLVaTd 145 (379)
...+++||.|+ ...+......+.. ...+..+||+............+ ..+...|+|+|.
T Consensus 284 ~~~~~~LIV~P-~sll~qW~~E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy 353 (800)
T 3mwy_W 284 RQNGPHIIVVP-LSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTY 353 (800)
T ss_dssp SCCSCEEEECC-TTTHHHHHHHHHHHSTTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECT
T ss_pred CCCCCEEEEEC-chHHHHHHHHHHHHCCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecH
Confidence 44678999999 5667666666654 57788999986555443333332 234567999985
No 163
>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1
Probab=21.80 E-value=1e+02 Score=24.77 Aligned_cols=45 Identities=11% Similarity=0.090 Sum_probs=28.7
Q ss_pred HHHHHHHcCCCcEEEEec-ccccHHHHHHHHh---------cCC-cEEEeeCCCCH
Q 016983 79 SDLITVYAKGGKTIVFTQ-TKRDADEVSLALT---------SII-ASEALHGDISQ 123 (379)
Q Consensus 79 ~~ll~~~~~~~~~IIF~~-t~~~~~~l~~~L~---------~~~-~v~~lhg~m~~ 123 (379)
..++....++.+++|||. +-......+..|. .++ .+..+.|++..
T Consensus 76 ~~l~~~~~~~~~iVvyC~~~G~rs~~aa~~L~~~l~~~L~~~G~~~V~~L~GG~~~ 131 (152)
T 1t3k_A 76 SHLVQNVKDKDTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNG 131 (152)
T ss_dssp HHHHHTCCSCCEEEESSSCCSSSHHHHHHHHHHHHHHSSSCCCSSEEEEESSTTHH
T ss_pred HHHHHhcCCCCEEEEEcCCCCcchHHHHHHHHHHHHHHHHhcCCCcEEEEcCCHHH
Confidence 344443345678999998 6555555555442 366 58889999854
No 164
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=21.68 E-value=1.5e+02 Score=22.99 Aligned_cols=49 Identities=18% Similarity=0.271 Sum_probs=33.6
Q ss_pred EEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeE
Q 016983 92 IVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTV 140 (379)
Q Consensus 92 IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~i 140 (379)
+||.+...-..++...+.. +..+..++++.....|..-++.|......+
T Consensus 6 vvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdv 55 (162)
T 2l82_A 6 VVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDV 55 (162)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEE
T ss_pred EEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCce
Confidence 5566655555566666653 788888888888888888888887654333
No 165
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=21.56 E-value=1.2e+02 Score=26.68 Aligned_cols=82 Identities=13% Similarity=0.154 Sum_probs=48.0
Q ss_pred ccHHHHHHHHHHHH--cCCCcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEec
Q 016983 72 TSKRTILSDLITVY--AKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVAT 144 (379)
Q Consensus 72 ~~k~~~L~~ll~~~--~~~~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaT 144 (379)
..|......++... ...+++||.|+++.-+++..+.+.. ...+..++|+.+... -..+...|+|+|
T Consensus 139 sGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~I~v~T 211 (282)
T 1rif_A 139 AGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD-------KYKNDAPVVVGT 211 (282)
T ss_dssp SCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT-------CCCTTCSEEEEC
T ss_pred CCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchh-------hhccCCcEEEEc
Confidence 35655443333321 2235999999999988888888764 135667777754322 122556899999
Q ss_pred cccc-cC--CCCCccceEE
Q 016983 145 DVAA-RG--LDIPNVDLII 160 (379)
Q Consensus 145 dv~~-rG--iDip~v~~VI 160 (379)
.-.. +- ....++++||
T Consensus 212 ~~~l~~~~~~~~~~~~~vI 230 (282)
T 1rif_A 212 WQTVVKQPKEWFSQFGMMM 230 (282)
T ss_dssp HHHHTTSCGGGGGGEEEEE
T ss_pred hHHHHhhHHHHHhhCCEEE
Confidence 6322 11 1234556555
No 166
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=21.18 E-value=98 Score=27.48 Aligned_cols=47 Identities=13% Similarity=0.123 Sum_probs=33.0
Q ss_pred HHHHHHHHH--cCCCcEEEEeccccc-HHHHHHHHhc-CC-cEEEeeCCCCH
Q 016983 77 ILSDLITVY--AKGGKTIVFTQTKRD-ADEVSLALTS-II-ASEALHGDISQ 123 (379)
Q Consensus 77 ~L~~ll~~~--~~~~~~IIF~~t~~~-~~~l~~~L~~-~~-~v~~lhg~m~~ 123 (379)
.+...+... .++.++||||.+-.. +..++..|.. ++ .+..+.|++..
T Consensus 73 ~~~~~~~~~gi~~~~~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~GG~~~ 124 (280)
T 1urh_A 73 TFAVAMRELGVNQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLAG 124 (280)
T ss_dssp HHHHHHHHTTCCTTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHHHH
T ss_pred HHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHH
Confidence 344445443 456789999998655 7778887874 77 68899999643
No 167
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=20.59 E-value=66 Score=28.70 Aligned_cols=46 Identities=13% Similarity=0.138 Sum_probs=32.8
Q ss_pred HHHHHHHH--HcCCCcEEEEecccccHHHHHHHHh-c-CC-cEEEeeCCCC
Q 016983 77 ILSDLITV--YAKGGKTIVFTQTKRDADEVSLALT-S-II-ASEALHGDIS 122 (379)
Q Consensus 77 ~L~~ll~~--~~~~~~~IIF~~t~~~~~~l~~~L~-~-~~-~v~~lhg~m~ 122 (379)
.+...+.. ..++.++||||.+-..+...+..|. . ++ .+..+.|++.
T Consensus 220 ~l~~~~~~~g~~~~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~~ 270 (285)
T 1uar_A 220 ELRALYEPLGITKDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSWT 270 (285)
T ss_dssp HHHHHHGGGTCCTTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHH
T ss_pred HHHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCchHH
Confidence 34444444 3456789999999777777888887 4 77 5888999863
No 168
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=20.48 E-value=47 Score=23.73 Aligned_cols=69 Identities=10% Similarity=0.015 Sum_probs=44.4
Q ss_pred eEEEEEeeCCcccCCCCChhHHHHHHhhhCCCCCCccccEEeeeCC-----c-eeeeecchhhHHHHhhhhcccCcceEe
Q 016983 286 WVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADD-----R-VCIDTVILLYFYASVRLGLFNTKSVIW 359 (379)
Q Consensus 286 ~~~l~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~ig~i~i~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (379)
|.++||+.=. ..++..+|..++...+.+ -.+.+..+. + +-...|.-++ +......+||..+.+
T Consensus 1 ~~~l~V~nLp----~~~t~~~l~~~F~~~G~i-----~~v~i~~~~~~~~~~g~afV~f~~~~--a~~a~~~l~g~~~~g 69 (90)
T 2ki2_A 1 MRNIYVGNLV----YSATSEQVKELFSQFGKV-----FNVKLIYDRETKKPKGFGFVEMQEES--VSEAIAKLDNTDFMG 69 (90)
T ss_dssp CEEEEEEEEC----TTSSHHHHTTTHHHHTCC-----SEEEECCCSSSCCCCEEEEEEECTTH--HHHHHHTSCSSCCSS
T ss_pred CcEEEECCCC----CCCCHHHHHHHHHhcCCE-----EEEEEEEcCCCCCcceEEEEEECCHH--HHHHHHHhCCCEECC
Confidence 4577875432 357889998888887644 345654331 2 3344555555 667777888888877
Q ss_pred eeehhh
Q 016983 360 LTYRFR 365 (379)
Q Consensus 360 ~~~~~~ 365 (379)
+..++.
T Consensus 70 ~~l~V~ 75 (90)
T 2ki2_A 70 RTIRVT 75 (90)
T ss_dssp SSCSEE
T ss_pred eEEEEE
Confidence 777664
No 169
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=20.04 E-value=68 Score=28.37 Aligned_cols=37 Identities=11% Similarity=0.072 Sum_probs=29.1
Q ss_pred cCCCcEEEEecccccHHHHHHHHhc-CC-cEEEeeCCCC
Q 016983 86 AKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDIS 122 (379)
Q Consensus 86 ~~~~~~IIF~~t~~~~~~l~~~L~~-~~-~v~~lhg~m~ 122 (379)
.++.++++||.+-..+...+..|.. ++ .+..+.|++.
T Consensus 221 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 259 (271)
T 1e0c_A 221 TPDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWG 259 (271)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHHH
T ss_pred CCCCCEEEECCchHHHHHHHHHHHHcCCCCceeeCCcHH
Confidence 4567899999998878888888864 77 4888888863
Done!