Query 016986
Match_columns 379
No_of_seqs 351 out of 1379
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 07:04:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016986.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016986hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 5.8E-34 2E-38 263.1 32.1 321 46-370 7-361 (491)
2 3o7q_A L-fucose-proton symport 100.0 1.4E-34 4.6E-39 263.5 25.3 295 48-374 23-348 (438)
3 1pw4_A Glycerol-3-phosphate tr 100.0 3.6E-33 1.2E-37 255.0 16.2 307 47-368 24-338 (451)
4 2gfp_A EMRD, multidrug resista 100.0 1.1E-30 3.6E-35 232.9 12.5 261 54-350 3-264 (375)
5 4aps_A DI-OR tripeptide H+ sym 100.0 3.3E-27 1.1E-31 217.9 24.9 288 81-371 49-374 (491)
6 2cfq_A Lactose permease; trans 99.9 3.1E-25 1E-29 200.2 4.1 281 61-369 17-307 (417)
7 2xut_A Proton/peptide symporte 99.9 5.7E-22 2E-26 184.4 16.5 151 74-227 36-197 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.7 3.2E-15 1.1E-19 136.1 18.0 173 53-228 254-433 (451)
9 4gc0_A D-xylose-proton symport 99.6 1.4E-14 4.9E-19 133.3 11.9 165 65-231 291-466 (491)
10 2cfq_A Lactose permease; trans 99.6 1.1E-14 3.9E-19 131.1 10.4 140 91-231 262-403 (417)
11 3o7q_A L-fucose-proton symport 99.5 1.1E-13 3.7E-18 125.4 11.6 151 68-223 275-427 (438)
12 4aps_A DI-OR tripeptide H+ sym 99.5 4E-13 1.4E-17 123.6 13.1 157 67-227 299-470 (491)
13 2gfp_A EMRD, multidrug resista 99.2 6.1E-12 2.1E-16 111.5 4.7 154 55-214 203-362 (375)
14 2xut_A Proton/peptide symporte 99.1 9.1E-10 3.1E-14 102.1 11.7 137 91-227 338-501 (524)
15 2g9p_A Antimicrobial peptide l 61.3 2.5 8.7E-05 19.2 0.6 14 107-120 2-15 (26)
16 4dve_A Biotin transporter BIOY 24.2 1.1E+02 0.0036 23.6 4.6 25 94-118 99-123 (198)
17 4dve_A Biotin transporter BIOY 21.7 2.5E+02 0.0085 21.6 6.2 22 329-350 101-122 (198)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=5.8e-34 Score=263.13 Aligned_cols=321 Identities=27% Similarity=0.451 Sum_probs=245.7
Q ss_pred cchhHHHHHHHHHHHHHHhhhhccccchhhhhhhhccCCc------chhHHHHHHHHHHHHHHHHHHhHHhhhccchhHH
Q 016986 46 WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNG------NTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRR 119 (379)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~ 119 (379)
.+..+...+++.++.++.++|.+.++..+|.+.++++.+. +....|++.+++.+|..++++++|+++||+|||+
T Consensus 7 ~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~ 86 (491)
T 4gc0_A 7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRD 86 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 3444666667788889999999999999999988875432 2234589999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHh------------------cccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHH
Q 016986 120 AFQLCALPMIIGASISA------------------TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAF 181 (379)
Q Consensus 120 ~l~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~ 181 (379)
+++++.+++.+++++++ +++|+++++++|+++|++.|...+....+++|+.|+++|++..++
T Consensus 87 ~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~ 166 (491)
T 4gc0_A 87 SLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSF 166 (491)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHh
Confidence 99999999999999998 478999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccccccc-------hhhHHHHHHHHHHHHHHHHHHhhcCCChhHHHHcCChHHHHHHHHHHhCC
Q 016986 182 IQIATCLGLMGSLLIGIPVKEIA-------GWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGG 254 (379)
Q Consensus 182 ~~~~~~~g~~~~~~~~~~l~~~~-------~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~ 254 (379)
.+.+..+|.++++.++..+.... .+||+.+.+..+..++.++..++.||+|+|+..+++.+++.+.+++....
T Consensus 167 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~ 246 (491)
T 4gc0_A 167 NQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGN 246 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCC
Confidence 99999999999988876554322 23899998888888888888899999999999999999988887766543
Q ss_pred CchhHHHHHHHhhhcCCCCCcchhhhhhcccchhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChh---HHHHHHH
Q 016986 255 SHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVG 331 (379)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 331 (379)
....++..+..+....++ +.......++ .+..........+..+.....+..|.+...+..+.... ......+
T Consensus 247 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (491)
T 4gc0_A 247 TLATQAVQEIKHSLDHGR-KTGGRLLMFG---VGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVG 322 (491)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHTTHHHHSC---CTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhhh-hhhhHHHHhc---ccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHH
Confidence 332222222111111100 0111112222 22333344444455556666777777777766655433 4566778
Q ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHH
Q 016986 332 IANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSISLI 370 (379)
Q Consensus 332 ~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~ 370 (379)
+..+++.++++++.||+|||+.+..+...+.++++.+..
T Consensus 323 ~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~ 361 (491)
T 4gc0_A 323 VINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGT 361 (491)
T ss_dssp HHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHH
Confidence 888999999999999999999998888877777665543
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=1.4e-34 Score=263.49 Aligned_cols=295 Identities=13% Similarity=0.124 Sum_probs=241.7
Q ss_pred hhHHHHHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHH
Q 016986 48 LSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP 127 (379)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~ 127 (379)
+++..+..+++..+..+++....++.+|.+.+++|.+..+. +++.+++.+++.++++++|+++||+|||++++.+.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~ 100 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQA--GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL 100 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHH--HHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHH
Confidence 34556667777778888888888999999999999988877 9999999999999999999999999999999999999
Q ss_pred HHHHHHHH---hcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhccccc-cc
Q 016986 128 MIIGASIS---ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK-EI 203 (379)
Q Consensus 128 ~~~~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-~~ 203 (379)
.+++.+++ +++++++.++++|+++|++.+...+...++++|++|+++|++++++.+.+..+|.++++.+++.+. +.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 180 (438)
T 3o7q_A 101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN 180 (438)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999 899999999999999999999999999999999999999999999999999999999999999988 55
Q ss_pred chh------------------------hHHHHHHHHHHHHHHHHHHhh--cCCChhHHHHcCChHHHHHHHHHHhCCCch
Q 016986 204 AGW------------------------WRICFWVSIVPAAILCLAMVF--CAESPHWLYKKGRTAEAEAEFEKLLGGSHV 257 (379)
Q Consensus 204 ~~~------------------------wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (379)
.+. ||+.|++.++..++..+..++ .||+++ +++.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~----~~~~---------------- 240 (438)
T 3o7q_A 181 VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS----DNHS---------------- 240 (438)
T ss_dssp SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTT----TCCC----------------
T ss_pred cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccc----cccc----------------
Confidence 554 899998766666555544443 344432 0000
Q ss_pred hHHHHHHHhhhcCCCCCcchhhhhhcccchhHHHHHHHHHHHHHhhchhHHHHh-HHHHHHHcCCChhHHHHHHHHHHHH
Q 016986 258 KSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYF-SSSVFKSAGLSSGLANVFVGIANLL 336 (379)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (379)
++++.....++++++++|.++...+..++..........+.+.| ..+.++.+..+.+.......++.++
T Consensus 241 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 310 (438)
T 3o7q_A 241 ----------DAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFI 310 (438)
T ss_dssp ----------CSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHH
T ss_pred ----------cccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHH
Confidence 01112223457788999999988888777777766666777777 6655555555567888888999999
Q ss_pred HHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHh
Q 016986 337 GSVVAMVLMDKLGRKALLQWSFFSMVICSSISLILEAF 374 (379)
Q Consensus 337 ~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 374 (379)
+.++.|+++||++||+.+..+.++..++.+++.+.++.
T Consensus 311 ~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (438)
T 3o7q_A 311 GRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGH 348 (438)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCc
Confidence 99999999999999999998888888877776655443
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=3.6e-33 Score=255.02 Aligned_cols=307 Identities=13% Similarity=0.062 Sum_probs=235.0
Q ss_pred chhHHHHHHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhH
Q 016986 47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL 126 (379)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~ 126 (379)
+.+++.+..+++..+..+++.....+.+|.+.+++ .+..+. +++.+++.++..++++++|+++||+|||++++++.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~ 100 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDL--GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI 100 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCH--HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHH--HHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHH
Confidence 34567777888888999999999999999999999 887777 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc----ccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccc
Q 016986 127 PMIIGASISAT----TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE 202 (379)
Q Consensus 127 ~~~~~~~~~~~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 202 (379)
+.+++.+++++ ++|++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+++.+.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 180 (451)
T 1pw4_A 101 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA 180 (451)
T ss_dssp HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999988776
Q ss_pred cchhhHHHHHHHHHHHHHHHH-HHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhh
Q 016986 203 IAGWWRICFWVSIVPAAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEEL 281 (379)
Q Consensus 203 ~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (379)
..+.||+.|++.++..++..+ ..+++||+|+....++..+... +... +...+.++.........++.
T Consensus 181 ~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~--~~~~~~~~~~~~~~~~~~~~ 248 (451)
T 1pw4_A 181 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN----------DYPD--DYNEKAEQELTAKQIFMQYV 248 (451)
T ss_dssp HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC----------C---------------CCTHHHHHHT
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcc----------cccc--cchhhhhcccccccchHHHH
Confidence 554389999998877766544 4466888765321111100000 0000 00000000111111225678
Q ss_pred hcccchhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhh--CchHHHHHHHH
Q 016986 282 LYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKL--GRKALLQWSFF 359 (379)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~~~~ 359 (379)
++++.++...+..++..........+.+.|+.+.++.+..+.+.......++.+++.++.|++.||+ ++|+.+..+..
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~ 328 (451)
T 1pw4_A 249 LPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFM 328 (451)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHH
Confidence 8888888887777777766666666666665543343344456888889999999999999999999 99988877766
Q ss_pred HHH-HHHHHH
Q 016986 360 SMV-ICSSIS 368 (379)
Q Consensus 360 ~~~-i~~~~~ 368 (379)
+.. ++.+++
T Consensus 329 ~~~~~~~~~~ 338 (451)
T 1pw4_A 329 TLVTIATIVY 338 (451)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 655 444433
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.97 E-value=1.1e-30 Score=232.93 Aligned_cols=261 Identities=14% Similarity=0.136 Sum_probs=222.8
Q ss_pred HHHHHHHHHHhhhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHH
Q 016986 54 LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS 133 (379)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~ 133 (379)
..+++..++..+......+.+|.+.+++|.+.++. +++.+++.++..++++++|+++||+|||++++.+.++.+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAV--QSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHH--HHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence 45566777778888888899999999999988777 9999999999999999999999999999999999999999999
Q ss_pred HHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Q 016986 134 ISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV 213 (379)
Q Consensus 134 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~ 213 (379)
+.+++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+.+..+ ||+.|++
T Consensus 81 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~ 159 (375)
T 2gfp_A 81 VAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN-WRACYLF 159 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH-HHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc-HHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998877 9999998
Q ss_pred HHHHHHHHHH-HHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccchhHHHH
Q 016986 214 SIVPAAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI 292 (379)
Q Consensus 214 ~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (379)
.++..++..+ ..+++||+++. ++ ++++...++++.+++|.++...+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~----~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~ 206 (375)
T 2gfp_A 160 LLVLCAGVTFSMARWMPETRPV----DA-----------------------------PRTRLLTSYKTLFGNSGFNCYLL 206 (375)
T ss_dssp HHHHHHHHHCCCCCSSCCCSTT----TC-----------------------------CCCCTTTCSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcccCCC----Cc-----------------------------ccccHHHHHHHHhcCcchHHHHH
Confidence 8777766655 34557776431 00 01122345677888888888877
Q ss_pred HHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 016986 293 GSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGR 350 (379)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~ 350 (379)
..++..........+.+.|..+.++.+..+.+.......++.+++.++.+++.||+++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~ 264 (375)
T 2gfp_A 207 MLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST 264 (375)
T ss_dssp HHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777888877777776677888888999999999999999999887
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.96 E-value=3.3e-27 Score=217.94 Aligned_cols=288 Identities=15% Similarity=0.118 Sum_probs=194.5
Q ss_pred ccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhcc-chhHHHHHHHhHHHHHHHHHHhcccchHHHHHHHHHHHhhhchhh
Q 016986 81 LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGP 159 (379)
Q Consensus 81 ~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 159 (379)
+|.+..+. +++.+++.++..++++++|+++|| +|||++++.+.++.+++.+++++++|++.++++|+++|++.+...
T Consensus 49 ~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 126 (491)
T 4aps_A 49 LHITRATA--ASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLK 126 (491)
T ss_dssp CCSCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcc
Confidence 89887776 999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCc--chhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHhhc-CCChh---
Q 016986 160 TVAALYVTEVSPPFV--RGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFC-AESPH--- 233 (379)
Q Consensus 160 ~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e~p~--- 233 (379)
+...++++|++|+++ |+.++++++.+.++|..++|.+++.+.+..+ ||+.|++.++..++..+..++. ++..+
T Consensus 127 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (491)
T 4aps_A 127 PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG-YHVAFSLAAIGMFIGLLVYYFGGKKTLDPHY 205 (491)
T ss_dssp HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCSCC
T ss_pred chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHhCcccccccc
Confidence 999999999999988 7778888999999999999999999998888 9999999777666555544332 22110
Q ss_pred -HHHHcCChHHHHHHHHH----------------HhCCCchhHHHHH---------HHhhhcCCCCCcchhhhhhcccch
Q 016986 234 -WLYKKGRTAEAEAEFEK----------------LLGGSHVKSSLAE---------LSKLDRGDDGDIVKFEELLYGRHF 287 (379)
Q Consensus 234 -~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 287 (379)
....+.+.++..+..+. .....+....... ........+.......+..+....
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (491)
T 4aps_A 206 LRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSY 285 (491)
T ss_dssp SCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTH
T ss_pred cCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 00001112222222221 0001000000000 000000000000011111112223
Q ss_pred hHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHH-----HHHHHHH
Q 016986 288 RVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQ-----WSFFSMV 362 (379)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~-----~~~~~~~ 362 (379)
....+..++...........++.|..+..+......+.......++.+++.++.+++.||++||+... .+..+++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~ 365 (491)
T 4aps_A 286 IPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAG 365 (491)
T ss_dssp HHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 34444445555555556666777776655555466778888888999999999999999999876544 6666666
Q ss_pred HHHHHHHHH
Q 016986 363 ICSSISLIL 371 (379)
Q Consensus 363 i~~~~~~~~ 371 (379)
++.+++...
T Consensus 366 ~~~~~~~~~ 374 (491)
T 4aps_A 366 LSFLLMAIP 374 (491)
T ss_dssp HHHTTTHHH
T ss_pred HHHHHHHHH
Confidence 665555443
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.90 E-value=3.1e-25 Score=200.24 Aligned_cols=281 Identities=15% Similarity=0.070 Sum_probs=174.4
Q ss_pred HHHhhhhccccchhhh-hhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHH---HHHh
Q 016986 61 FLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA---SISA 136 (379)
Q Consensus 61 ~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~---~~~~ 136 (379)
++.........+.+|. +++++|.+..+. |++.+++.++..++++++|+++||+|||++++.+..+.+++. +..+
T Consensus 17 ~~~~~~~~~~~~~~~~~l~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~ 94 (417)
T 2cfq_A 17 FFYFFIMGAYFPFFPIWLHDINHISKSDT--GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFI 94 (417)
T ss_dssp HHHHHHHHHHTTTHHHHHHTTTCCCTTTS--HHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444566666 456689988777 999999999999999999999999999999998887765532 2122
Q ss_pred cccch-HHHHHHHHHHHhhhchhhHHHHHHHHhhcCC--CcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Q 016986 137 TTRNL-IGMLLGRFVVGTGMGLGPTVAALYVTEVSPP--FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV 213 (379)
Q Consensus 137 ~~~~~-~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~ 213 (379)
+++.. ..+...+++.|++.+...+.....+.++.++ ++|+...+.......+|..++|.+++.+.+. + ||+.|++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~-~-~~~~f~~ 172 (417)
T 2cfq_A 95 FGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-N-NQFVFWL 172 (417)
T ss_dssp HHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHH-C-SHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh-c-hhHHHHH
Confidence 32221 1233455665655554444333444444432 3567777777777788999999999888763 4 8999998
Q ss_pred HHHHHHHHHHHHhhcCCChhHHHHcCChHHHHHHHHHHhCCCchhHHHHHHHhhhcCCCCCcchhhhhhcccchhHHHHH
Q 016986 214 SIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIG 293 (379)
Q Consensus 214 ~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (379)
.++..++..+..++.+|+++. +.+.++. +.++.++....++++++++|.++...+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (417)
T 2cfq_A 173 GSGCALILAVLLFFAKTDAPS---SATVANA---------------------VGANHSAFSLKLALELFRQPKLWFLSLY 228 (417)
T ss_dssp TTTTTTTHHHHSCSSCCCCSC---SSCSSSS---------------------SSSCCCCCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCccccc---ccccccc---------------------cccccccccHHHHHHHhcCCchhhHHHH
Confidence 766655554444444443310 0000000 0000111122345677888887766554
Q ss_pred HHHHHHHHhhchhHHHHhHHHHHH---HcCCChhHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHH
Q 016986 294 STLFALQQLSGINAIFYFSSSVFK---SAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMVICSSISL 369 (379)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~ 369 (379)
.+...........+.+.|+.+.++ ......+.......++.+++.++.++++||+|||+.+..+..+.+++.+++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~ 307 (417)
T 2cfq_A 229 VIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSS 307 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Confidence 443333333333455666544332 1122235666677788889999999999999999988887777766554443
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.88 E-value=5.7e-22 Score=184.36 Aligned_cols=151 Identities=16% Similarity=0.160 Sum_probs=135.3
Q ss_pred hhhhhhhcc------CCcchhHHHHHHHHHHHHHHHHHHhHHhhhccc-hhHHHHHHHhHHHHHHHHHHhccc-chHHHH
Q 016986 74 LESISLDLG------FNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-GRRRAFQLCALPMIIGASISATTR-NLIGML 145 (379)
Q Consensus 74 ~~~i~~~~~------~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~ 145 (379)
.+.+.+++| .+..+. +++.+++.++..+++++.|+++||+ |||+++..+.++.+++.++.++++ +++.++
T Consensus 36 ~~~l~~~~~~~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (524)
T 2xut_A 36 TPFLMTALLLSIPEELRGAVA--KDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFY 113 (524)
T ss_dssp HHHHHHSCSSCCSSSTTTTTH--HHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred HHHHHHHhccccccccCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 344677888 877777 9999999999999999999999999 999999999999999999999999 999999
Q ss_pred HHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHH---HHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHH
Q 016986 146 LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAF---IQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILC 222 (379)
Q Consensus 146 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~ 222 (379)
+.|++.|++.+...+...+++.|++|+++|+++.+. .+.+.++|.+++|.+++.+.+..+ ||+.|++.++..++..
T Consensus 114 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~~~f~~~~~~~~~~~ 192 (524)
T 2xut_A 114 TGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFG-AAVAFGIPGVLMFVAT 192 (524)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999877666 889999999999999999988777 9999998877766655
Q ss_pred HHHhh
Q 016986 223 LAMVF 227 (379)
Q Consensus 223 ~~~~~ 227 (379)
+..++
T Consensus 193 ~~~~~ 197 (524)
T 2xut_A 193 VFFWL 197 (524)
T ss_dssp HHHHS
T ss_pred HHHHH
Confidence 55443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.66 E-value=3.2e-15 Score=136.09 Aligned_cols=173 Identities=16% Similarity=0.166 Sum_probs=140.8
Q ss_pred HHHHHHHHHHHhhhhccccchhhhhhhh-ccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccc--hhHHHHHHHhHHHH
Q 016986 53 VLVATLSSFLFGYHLGVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV--GRRRAFQLCALPMI 129 (379)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~--Grr~~l~~~~~~~~ 129 (379)
+....+..++............|.+.++ +|.+..+. +++.+.+.++..++.++.|++.||+ |||+.+..+..+..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 254 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKS--SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 3344444444444444455667776666 78876666 8999999999999999999999999 99999988877766
Q ss_pred -HHHHHHhcc--cchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHH-HHHHHHhhcccccccch
Q 016986 130 -IGASISATT--RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCL-GLMGSLLIGIPVKEIAG 205 (379)
Q Consensus 130 -~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~ 205 (379)
++.++..+. .+.+.+.+..++.|++.+...+....++.|.+|+++|+++.++.+....+ |..++|.+.+.+.+..+
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g 411 (451)
T 1pw4_A 332 TIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG 411 (451)
T ss_dssp HHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 677777766 36777888889999999999988899999999999999999999999999 99999999999999888
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhc
Q 016986 206 WWRICFWVSIVPAAILCLAMVFC 228 (379)
Q Consensus 206 ~wr~~f~~~~~~~~~~~~~~~~~ 228 (379)
|+..|++.++..++..+..+++
T Consensus 412 -~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 412 -WDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHHHHHHHHH
Confidence 8999998877777666555443
No 9
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.56 E-value=1.4e-14 Score=133.31 Aligned_cols=165 Identities=18% Similarity=0.082 Sum_probs=114.4
Q ss_pred hhhccccchhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcc-----c
Q 016986 65 YHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT-----R 139 (379)
Q Consensus 65 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~-----~ 139 (379)
.....+....+.+.++.+.+.... ........+...++.++.+++.||+|||+.++.+.....++.+..+.. +
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~ 368 (491)
T 4gc0_A 291 VGINVVLYYAPEVFKTLGASTDIA--LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAP 368 (491)
T ss_dssp TCHHHHHHHHHHHHHHSSCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hhhhHHHhcchHHHHhcCCCccch--hhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccc
Confidence 333444556677778777765544 456667778888999999999999999999999988888777665432 1
Q ss_pred chHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccch-----hhHHHHHHH
Q 016986 140 NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG-----WWRICFWVS 214 (379)
Q Consensus 140 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-----~wr~~f~~~ 214 (379)
+...++..-+..+.......++...+.+|.+|.+.|++++++......+|..+++.+.+.+.+... ++.+.|++.
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~ 448 (491)
T 4gc0_A 369 GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIY 448 (491)
T ss_dssp HHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 222222222222222333456778899999999999999999999999999888887766544321 144566666
Q ss_pred HHHHHHHHH-HHhhcCCC
Q 016986 215 IVPAAILCL-AMVFCAES 231 (379)
Q Consensus 215 ~~~~~~~~~-~~~~~~e~ 231 (379)
+..+++..+ .++++||+
T Consensus 449 ~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 449 GCMGVLAALFMWKFVPET 466 (491)
T ss_dssp HHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHheecCC
Confidence 666655554 45779999
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.56 E-value=1.1e-14 Score=131.06 Aligned_cols=140 Identities=14% Similarity=0.006 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccchHHHHHHHHHHHhhhchhhHHHHHHHHhhc
Q 016986 91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVS 170 (379)
Q Consensus 91 ~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 170 (379)
++..++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....++.|.+
T Consensus 262 g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 341 (417)
T 2cfq_A 262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF 341 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 67778888888899999999999999999999999888888888888888888888888888887777777789999999
Q ss_pred CCCcchhHHHH-HHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHh-hcCCC
Q 016986 171 PPFVRGTYGAF-IQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMV-FCAES 231 (379)
Q Consensus 171 ~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e~ 231 (379)
|++.|+.+.++ ++....+|..++|.+++.+.+..+ ++..|.+.++..++..+..+ +.+|+
T Consensus 342 p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~~~~~~ 403 (417)
T 2cfq_A 342 EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp CHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH-HHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred CHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 99999999998 488888999999999999988777 78888887777766655543 35554
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.49 E-value=1.1e-13 Score=125.41 Aligned_cols=151 Identities=14% Similarity=0.031 Sum_probs=121.1
Q ss_pred ccccchhhhh-hhh-ccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHHHHHHHHHHhcccchHHHH
Q 016986 68 GVVNEPLESI-SLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGML 145 (379)
Q Consensus 68 ~~~~~~~~~i-~~~-~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~ 145 (379)
.......|.+ .++ +|.+..+. ++..+.+.++..++.++.|+++||+|||+++..+.++..++.++..+.++.+.++
T Consensus 275 ~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (438)
T 3o7q_A 275 TACWSYLIRYAVEEIPGMTAGFA--ANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLI 352 (438)
T ss_dssp HHHHHHHHHHHHHHSTTCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHhhhccCCcchhHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 3334455555 444 58876666 8999999999999999999999999999999999999999999888888876655
Q ss_pred HHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHH
Q 016986 146 LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCL 223 (379)
Q Consensus 146 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~ 223 (379)
.. ++.|++.+...+...++..|.+|++ |+.+.++.. ...+|..++|.+.+.+.+..+.++..|++.++..++..+
T Consensus 353 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 353 AL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 44 8889999999999999999999866 888888877 556899999999999988766467777765544444333
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.46 E-value=4e-13 Score=123.62 Aligned_cols=157 Identities=10% Similarity=-0.003 Sum_probs=118.3
Q ss_pred hccccchhhhhhh-hccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHH-----HHhHHHHHHHHHHhccc-
Q 016986 67 LGVVNEPLESISL-DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQ-----LCALPMIIGASISATTR- 139 (379)
Q Consensus 67 ~~~~~~~~~~i~~-~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~-----~~~~~~~~~~~~~~~~~- 139 (379)
.......+|.+.+ .++.+..+. ++..+...++..++.++.|++.||+|||+... .+.++.+++.++.++..
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (491)
T 4aps_A 299 EEQGSVVLATFAAERVDSSWFPV--SWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGA 376 (491)
T ss_dssp HGGGGTHHHHHHHHSCCCSSSCS--GGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHH
T ss_pred HhhccHHHHHHHHHHhccCccCH--HHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445554444 355553344 67788888888999999999999999986655 67777777766665543
Q ss_pred --------chHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Q 016986 140 --------NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICF 211 (379)
Q Consensus 140 --------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr~~f 211 (379)
+.+.+++.-++.|++.+...+....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+.. +.+.|
T Consensus 377 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~--~~~~~ 454 (491)
T 4aps_A 377 LYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKS--EVAYF 454 (491)
T ss_dssp HCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSS--TTHHH
T ss_pred hcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHH
Confidence 77778888899999999989999999999999999999999999999999999999999887654 45666
Q ss_pred HHHHHHHHHHHHHHhh
Q 016986 212 WVSIVPAAILCLAMVF 227 (379)
Q Consensus 212 ~~~~~~~~~~~~~~~~ 227 (379)
.+.+...++..+..++
T Consensus 455 ~~~~~~~~~~~~~~~~ 470 (491)
T 4aps_A 455 SYFGLGSVVLGIVLVF 470 (491)
T ss_dssp HHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666655555544443
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.21 E-value=6.1e-12 Score=111.48 Aligned_cols=154 Identities=15% Similarity=0.100 Sum_probs=112.0
Q ss_pred HHHHHHHHHhhhhccccchhhhhhhh-ccCCcchhHHHHHHHHHHHHHHHHHHhHHhhhccchhHHHHHHHhHH-HHHHH
Q 016986 55 VATLSSFLFGYHLGVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP-MIIGA 132 (379)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~-~~~~~ 132 (379)
...+..++............|.+.++ +|.+..+. +++.+...++..++.++.+++.||+|+|. ..+... ...+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~ 278 (375)
T 2gfp_A 203 CYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTV--SILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGL 278 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHH--HHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 33333344444444444556655444 78765555 89999999999999999999999999833 233322 22221
Q ss_pred H--HHhc--ccchHHHHHHHHHHHhhhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccchhhH
Q 016986 133 S--ISAT--TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWR 208 (379)
Q Consensus 133 ~--~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~wr 208 (379)
. .... .++.+.+++..++.|++.+...+....++.|..| ++|+++.++.+....+|..++|.+.+.+.+..+ |+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~-~~ 356 (375)
T 2gfp_A 279 LMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ-GS 356 (375)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH-HH
T ss_pred HHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc-cc
Confidence 1 1222 2467777788899999999999999999999998 899999999999999999999999998877655 77
Q ss_pred HHHHHH
Q 016986 209 ICFWVS 214 (379)
Q Consensus 209 ~~f~~~ 214 (379)
..+.+.
T Consensus 357 ~~~~~~ 362 (375)
T 2gfp_A 357 LGLLMT 362 (375)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.05 E-value=9.1e-10 Score=102.06 Aligned_cols=137 Identities=12% Similarity=0.096 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHHHhHHhhh----ccchh----HHHHHHHhHHHHHHHHHHhcc---------cchHHHHHHHHHHHh
Q 016986 91 GLVVSMCLGGAFIGSTLSGWIA----DGVGR----RRAFQLCALPMIIGASISATT---------RNLIGMLLGRFVVGT 153 (379)
Q Consensus 91 ~~~~s~~~~~~~i~~~~~g~l~----d~~Gr----r~~l~~~~~~~~~~~~~~~~~---------~~~~~l~~~r~l~G~ 153 (379)
+++.+...++..++.++.+++. ||.|+ ++.+..+.++.+++.++.++. .+.+.+++..++.|+
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 417 (524)
T 2xut_A 338 AMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTF 417 (524)
T ss_dssp HHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHH
Confidence 5666666677777777777764 55543 356777888888887777664 367778888999999
Q ss_pred hhchhhHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHhhcccccccch-hh---------HHHHHHHHHHHHHHHH
Q 016986 154 GMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG-WW---------RICFWVSIVPAAILCL 223 (379)
Q Consensus 154 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~w---------r~~f~~~~~~~~~~~~ 223 (379)
+.+...+....++.|..|+++|++++|+.+....+|..++|.+.+.+.+..+ +| +..|++.+...++..+
T Consensus 418 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (524)
T 2xut_A 418 GEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAI 497 (524)
T ss_dssp HHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998876431 13 3336665555555544
Q ss_pred HHhh
Q 016986 224 AMVF 227 (379)
Q Consensus 224 ~~~~ 227 (379)
..++
T Consensus 498 ~~~~ 501 (524)
T 2xut_A 498 VFAL 501 (524)
T ss_dssp HHC-
T ss_pred HHHH
Confidence 4433
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=61.34 E-value=2.5 Score=19.19 Aligned_cols=14 Identities=29% Similarity=0.439 Sum_probs=11.2
Q ss_pred hHHhhhccchhHHH
Q 016986 107 LSGWIADGVGRRRA 120 (379)
Q Consensus 107 ~~g~l~d~~Grr~~ 120 (379)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 36888899999864
No 16
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=24.20 E-value=1.1e+02 Score=23.63 Aligned_cols=25 Identities=8% Similarity=-0.059 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhHHhhhccchhH
Q 016986 94 VSMCLGGAFIGSTLSGWIADGVGRR 118 (379)
Q Consensus 94 ~s~~~~~~~i~~~~~g~l~d~~Grr 118 (379)
+.-|.+|+.++..+.|++.||..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 4567788888899999999987543
No 17
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=21.73 E-value=2.5e+02 Score=21.56 Aligned_cols=22 Identities=23% Similarity=0.116 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhCc
Q 016986 329 FVGIANLLGSVVAMVLMDKLGR 350 (379)
Q Consensus 329 ~~~~~~~~~~~~~g~l~d~~g~ 350 (379)
.+-++.+++..+.|++.+|..+
T Consensus 101 GYLiGF~~aA~v~G~l~~~~~~ 122 (198)
T 4dve_A 101 GYRIAWLFTPFLIGFFLKKLKI 122 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHHHHHHHHccc
Confidence 3455667778888888888643
Done!