Citrus Sinensis ID: 016987

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
Protein Sequence
MGLISGVFMGMIFGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNFPVWISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVIFQLAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQWPHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPAQWVPILNSEYGAALSNMHLIYIYKYLRICIYISGGQIL
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHHEHHHHHHHHHHHHHHHHcccHHHHHHHHccccccEEcccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEccccccEEEEEEEEEcccccEEEEEEEEEccccEEEEEEEEcccEEEEEEEEEEEEEEEEEEEEEEccccccccEEEEEEccccEEEEEEEEEEccccccccccccHHHHHHHHHHHHHHcccccEEEEEccccccccccccccccEEEEEEEEEEccccccccccccccEEEEEEccEEEEEEEEEccccccEEEEEEEEEEEcccccEEEEEEEEccccccccccccEEEEccccccccEEcccccEEEEEEEccccEEc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHHcHccccccEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHcEEEEEEEEccccccEEEEEEEEEccccEEEEEEEEEEcccccEEEEHHHHHHHcccEEEEEEEEEEEEEEEEEEccccccEEEEEEEEEccccccEcEEEEEccccHcccccHHHHHHHHHHHHHHHHcccccEEEEEEEccccccccccccccEEEEEEEEEcccccccccccccccEEEEEEcccEEEEEEEEEccccccccEEEEEEEEcccccEEEEEEEEcccccccEEEcHHHcccccHHHHHHHEEcccccEEEEEccccccc
Coil and Loop (DISEMBL)
MGLISGVFMGMIFGIALMAGWRHMMRYRSTKRIAKAADIkilgslnrddlkkicgdnfpvwisfPVYEQVKWLNKELSKLWPFVADAAELVIKESVeplleeyrppgitslkfsklslgnvapkiegIRVQslkqgqitmdidfrwggdpsiILGVEAAMVASipiqlkdlQVFTVIRVIFQLAEEIPCISAVVVALlsepkpridYTLKAvggsltaipgiadmiDDTVDSIITDmlqwphrivvpiggipvdtselelkpqgkVAVTIVKANNlknmemigksdpyavvhikplfkvktnvvdnnlnpvWNQTFELIAEDKETQSLIFEVYIFLlffpaqwvpilnseYGAALSNMHLIYIYKYLRICIYISGGQIL
Flexible Loop (DISEMBL)
MGLISGVFMGMIFGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNFPVWISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVIFQLAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQWPHRIVVPIGGIPVDTselelkpqgkVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVktnvvdnnlNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPAQWVPILNSEYGAALSNMHLIYIYKYLRICIYISGGQIL
Low Complexity Region (SEG)
MGLISGVFMGMIFGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNFPVWISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVIFQLAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQWPHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPAQWVPILNSEYGAALSNMHLIYIYKYLRICIYISGGQIL
Disordered region (IsUnstruct)
**LISGVFMGMIFGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNFPVWISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVIFQLAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQWPHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPAQWVPILNSEYGAALSNMHLIYIYKYLRICIYISG****
Disordered Region (DISOPRED)
MGLISGVFMGMIFGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRD*********FPVWISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVIFQLAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQWPHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPAQWVPILNSEYGAALSNMH**********CIYISGGQ**
Disordered Region (DISEMBL)
MGLISGVFMGMIFGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNFPVWISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVIFQLAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQWPHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPAQWVPILNSEYGAALSNMHLIYIYKYLRICIYISGGQIL
Disordered Region (DISPRO)
*GLISGVFMGMIFGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNFPVWISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVIFQLAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQWPHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPAQWVPILNSEYGAALSNMHLIYIYKYLRICIYISGG**L
Transmembrane Helix (TMHMM)
iHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (MEMSAT)
ooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGLISGVFMGMIFGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNFPVWISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVIFQLAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQWPHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPAQWVPILNSEYGAALSNMHLIYIYKYLRICIYISGGQIL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	379	2.2.26 [Sep-21-2011]
Q8L706	560	Synaptotagmin-5 OS=Arabid	no	no	0.868	0.587	0.418	8e-75
A0JJX5	569	Synaptotagmin-4 OS=Arabid	no	no	0.868	0.578	0.424	1e-73
Q7XA06	540	Synaptotagmin-3 OS=Arabid	no	no	0.701	0.492	0.352	1e-43
B6ETT4	537	Synaptotagmin-2 OS=Arabid	no	no	0.852	0.601	0.304	2e-39
Q9SKR2	541	Synaptotagmin-1 OS=Arabid	no	no	0.707	0.495	0.308	9e-38
Q3U7R1	1092	Extended synaptotagmin-1	yes	no	0.823	0.285	0.286	5e-30
Q9Z1X1	1088	Extended synaptotagmin-1	yes	no	0.823	0.286	0.286	2e-29
Q5DTI8	891	Extended synaptotagmin-3	no	no	0.815	0.346	0.293	9e-29
A0FGR9	886	Extended synaptotagmin-3	yes	no	0.815	0.348	0.287	1e-28
Q9BSJ8	1104	Extended synaptotagmin-1	no	no	0.833	0.286	0.280	4e-28

>sp|Q8L706|SYT5_ARATH Synaptotagmin-5 OS=Arabidopsis thaliana GN=SYT5 PE=2 SV=1

 Score =  281 bits (718), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 141/337 (41%), Positives = 221/337 (65%), Gaps = 8/337 (2%)

Query: 1   MGLISGVFMGMIFGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNF-P 59
           MG I GV +G++ GIA++ G+  +   RS  R   A  +     +  +D +K+    F P
Sbjct: 1   MGFIVGVVIGLLVGIAIIIGFVKLENSRSKLRSELANTVAAFARMTVEDSRKLLPPEFYP 60

Query: 60  VWISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLG 119
            W+ F   +++ WLN  L+K+WP+V +AA  +IK SVEP+LE+YRP  + SL FSKL+LG
Sbjct: 61  SWVVFSERQKLTWLNHHLTKIWPYVDEAASELIKASVEPVLEQYRPAIVASLTFSKLTLG 120

Query: 120 NVAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRV 179
            VAP+  G+ V    +  IT+++D +W G+P+I+LGV+  +  S+PIQ+K++    V R+
Sbjct: 121 TVAPQFTGVSVIDGDKNGITLELDMQWDGNPNIVLGVKTLVGVSLPIQVKNIGFTGVFRL 180

Query: 180 IFQ-LAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDML 238
           IF+ L E+ PC  AV V+L    K ++D+TLK VGG ++AIPG+++ I++T+   + D +
Sbjct: 181 IFRPLVEDFPCFGAVSVSL--REKKKLDFTLKVVGGDISAIPGLSEAIEETIRDAVEDSI 238

Query: 239 QWPHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFK 298
            WP R V+PI  IP D S+LELKP G + V +V+A NL N +++GKSDP+A + I+PL +
Sbjct: 239 TWPVRKVIPI--IPGDYSDLELKPVGMLEVKLVQAKNLTNKDLVGKSDPFAKMFIRPLRE 296

Query: 299 --VKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVY 333
              ++  ++N+LNP+WN+ FE + ED  TQ L+  +Y
Sbjct: 297 KTKRSKTINNDLNPIWNEHFEFVVEDASTQHLVVRIY 333

May be involved in membrane trafficking.
Arabidopsis thaliana (taxid: 3702)

>sp|A0JJX5|SYT4_ARATH Synaptotagmin-4 OS=Arabidopsis thaliana GN=SYT4 PE=2 SV=1

 Score =  277 bits (708), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 144/339 (42%), Positives = 214/339 (63%), Gaps = 10/339 (2%)

Query: 1   MGLISGVFMGMIFGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKIC-GDNFP 59
           MG + G+F+G+     L+  +      RST+R   A  I     +   D +K+  GD +P
Sbjct: 1   MGFLFGLFIGIAVSFGLVVAFARYSSVRSTRRADLAKTIAAFARMTVQDSRKLLPGDFYP 60

Query: 60  VWISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLG 119
            W+ F   +++ WLN EL K+WP+V +AA  +IK SVEP+LE+Y P  + SLKFSK +LG
Sbjct: 61  SWVVFSQRQKLNWLNLELEKIWPYVNEAASELIKSSVEPVLEQYTPAMLASLKFSKFTLG 120

Query: 120 NVAPKIEGIRVQSLKQG--QITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVI 177
            VAP+  G+ +   + G   ITM+++ +W G+P I+L V+  +  S+PI++K++    V 
Sbjct: 121 TVAPQFTGVSILESESGPNGITMELEMQWDGNPKIVLDVKTLLGVSLPIEVKNIGFTGVF 180

Query: 178 RVIFQ-LAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITD 236
           R+IF+ L +E PC  A+  +L    K  +D+TLK +GG LT+IPGI+D I++T+   I D
Sbjct: 181 RLIFKPLVDEFPCFGALSYSL--REKKGLDFTLKVIGGELTSIPGISDAIEETIRDAIED 238

Query: 237 MLQWPHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL 296
            + WP R ++PI  +P D S+LELKP GK+ V +V+A +L N +MIGKSDPYA+V I+PL
Sbjct: 239 SITWPVRKIIPI--LPGDYSDLELKPVGKLDVKVVQAKDLANKDMIGKSDPYAIVFIRPL 296

Query: 297 --FKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVY 333
                KT  + N+LNP+WN+ FE I ED  TQ L   V+
Sbjct: 297 PDRTKKTKTISNSLNPIWNEHFEFIVEDVSTQHLTVRVF 335

May be involved in membrane trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XA06|SYT3_ARATH Synaptotagmin-3 OS=Arabidopsis thaliana GN=SYT3 PE=2 SV=1

 Score =  177 bits (449), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 98/278 (35%), Positives = 160/278 (57%), Gaps = 12/278 (4%)

Query: 61  WISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPP-GITSLKFSKLSLG 119
           W+  P YE+V W NK +S +WP++  A   +I+ SV+PL  +Y     I S++F  LSLG
Sbjct: 62  WMKNPDYERVDWFNKFISYMWPYLDKAVCGIIRSSVQPLFADYIGTFCIESIEFENLSLG 121

Query: 120 NVAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRV 179
            + P + G++     + ++  +   +W G+P+I+L V   +   I +QL DLQ F ++RV
Sbjct: 122 TLPPTVHGVKFYETNEKELLFEPSIKWAGNPNIVL-VLKVLSLRIRVQLVDLQFFAIVRV 180

Query: 180 IFQ-LAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDML 238
             + L    PC   VVV+L+   KP +D+ LK +GG L +IPG+   + +T+   ++ M 
Sbjct: 181 ALKPLLPTFPCFGMVVVSLME--KPHVDFGLKVLGGDLMSIPGLYRYVQETIKRQVSSMY 238

Query: 239 QWPHRIVVPIGGIPVDTSELEL-KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHI--KP 295
            WP  + +PI    +D+S   + KP G + V+I++A NL   +++G SDPY  + +  + 
Sbjct: 239 HWPQVLEIPI----LDSSTASVKKPVGLLHVSILRARNLLKKDLLGTSDPYVKLSLTGEK 294

Query: 296 LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVY 333
           L   KT +   NLNP WN+ F+LI +D  +Q L  EV+
Sbjct: 295 LPAKKTTIKKRNLNPEWNEHFKLIVKDPNSQVLQLEVF 332

May be involved in membrane trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|B6ETT4|SYT2_ARATH Synaptotagmin-2 OS=Arabidopsis thaliana GN=SYT2 PE=2 SV=1

 Score =  163 bits (413), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 104/341 (30%), Positives = 190/341 (55%), Gaps = 18/341 (5%)

Query: 1   MGLISGVF--MGMIFG--IALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGD 56
           MG+IS +   +G  FG  I ++ G+   + ++ST    +  +IK L  L+ + +  +  +
Sbjct: 1   MGIISTILGVIGFGFGTTIGIVIGYYLFIYFQSTD--VEDPEIKPLVELDSETIATMFPE 58

Query: 57  NFPVWISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPP-GITSLKFSK 115
             P+W+  P ++++ WLNK +  +WP++  A   + K   +P++ E  P   I S++F  
Sbjct: 59  -IPMWVKNPDFDRIDWLNKLIGHMWPYMDKAICKMAKSIAKPIIAEQIPNYKIDSVEFEM 117

Query: 116 LSLGNVAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFT 175
           L+LG++ P  +G++V +    +I M++  +W G+P+II+ V  A      +Q+ DLQV+ 
Sbjct: 118 LTLGSLPPSFQGMKVYATDDKEIIMELSVKWAGNPNIIV-VAKAFGLKATVQVIDLQVYA 176

Query: 176 VIRVIFQ-LAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSII 234
             R+  + L    PC + + V+L+   KP++D+ LK +G  + AIPG+   + + +   +
Sbjct: 177 TPRITLKPLVPSFPCFANIFVSLMD--KPQVDFGLKLLGADVMAIPGLYRFVQEIIKDQV 234

Query: 235 TDMLQWPHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIK 294
            +M  WP  + V I    +D S+   KP G ++V ++KA  LK  +++G SDPY  + + 
Sbjct: 235 ANMYLWPKTLNVQI----MDPSKAMKKPVGLLSVKVIKAIKLKKKDLLGGSDPYVKLTLS 290

Query: 295 --PLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVY 333
              +   KT V  +NLNP WN+ F+L+ ++ E+Q L   VY
Sbjct: 291 GDKVPGKKTVVKHSNLNPEWNEEFDLVVKEPESQELQLIVY 331

May play an important role in regulating an unconventional protein trafficking from the cytosol to the extracelluar matrix.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SKR2|SYT1_ARATH Synaptotagmin-1 OS=Arabidopsis thaliana GN=SYT1 PE=1 SV=2

 Score =  157 bits (398), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 86/279 (30%), Positives = 156/279 (55%), Gaps = 11/279 (3%)

Query: 59  PVWISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPP-GITSLKFSKLS 117
           P+W+  P +++V W+N+ L  +WP++  A     K   +P++EE  P   I S++F  L+
Sbjct: 60  PLWVKNPDFDRVDWINRFLEYMWPYLDKAICKTAKNIAKPIIEEQIPKYKIDSVEFETLT 119

Query: 118 LGNVAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVI 177
           LG++ P  +G++V    + ++ M+   +W  +P+I++ ++A  + +  +Q+ DLQVF   
Sbjct: 120 LGSLPPTFQGMKVYLTDEKELIMEPCLKWAANPNILVAIKAFGLKAT-VQVVDLQVFAQP 178

Query: 178 RVIFQ-LAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITD 236
           R+  + L    PC + + V+L+   KP +D+ LK  G  L +IPG+   + + +   + +
Sbjct: 179 RITLKPLVPSFPCFANIYVSLME--KPHVDFGLKLGGADLMSIPGLYRFVQEQIKDQVAN 236

Query: 237 MLQWPHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIK-- 294
           M  WP  +VVPI    +D ++   +P G V V +V+A  L+  +++G +DP+  + +   
Sbjct: 237 MYLWPKTLVVPI----LDPAKAFRRPVGIVHVKVVRAVGLRKKDLMGGADPFVKIKLSED 292

Query: 295 PLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVY 333
            +   KT V   NLNP WN+ F+    D +TQ L F VY
Sbjct: 293 KIPSKKTTVKHKNLNPEWNEEFKFSVRDPQTQVLEFSVY 331

Plays an important role in maintaining plasma membrane integrity during freezing and osmotic stresses. May function in membrane resealing during calcium-dependent freezing tolerance. May regulate endocytosis and endosome recycling at the plasma membrane and cell-to-cell trafficking of cabbage leaf curl virus (CaLCuV) and tobacco mosaic virus (TMV) movement proteins via plasmodesmata.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3U7R1|ESYT1_MOUSE Extended synaptotagmin-1 OS=Mus musculus GN=Esyt1 PE=2 SV=2

 Score =  132 bits (331), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 99/345 (28%), Positives = 179/345 (51%), Gaps = 33/345 (9%)

Query: 5   SGVFMGMI-FGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNF----- 58
           +G+ +G + FG+AL  GWR   R R  K  +  A  ++L     DD ++I  +       
Sbjct: 64  AGLSVGFVLFGLALYLGWR---RVRDGKERSLRAARQLL-----DDEERITAETLYMSHR 115

Query: 59  --PVWISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKL 116
             P W+SFP  E+ +WLNK ++++WPF+    E ++ E+V P +     P + +  F+++
Sbjct: 116 ELPAWVSFPDVEKAEWLNKIVAQVWPFLGQYMEKLLAETVAPAVRGAN-PHLQTFTFTRV 174

Query: 117 SLGNVAPKIEGIRVQ-SLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFT 175
            LG    +I G++V  S ++ QI +D++  + GD  I + V+     +    +K +Q+  
Sbjct: 175 ELGEKPLRIIGVKVHPSQRKDQILLDLNVSYVGDVQIDVEVKKYFCKA---GVKGMQLHG 231

Query: 176 VIRVIFQ-LAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSII 234
           V+RVI + L  ++P + AV +  +  P   I++T      +L  IPG++ + D  +   I
Sbjct: 232 VLRVILEPLTGDLPIVGAVSMFFIKRPTLDINWTGMT---NLLDIPGLSSLSDTMIMDSI 288

Query: 235 TDMLQWPHRIVVPIGGIPVDTSELELK-PQGKVAVTIVKANNLKNME------MIGKSDP 287
              L  P+R++VP+     D ++L    P+G + + ++ A  L + +      + GKSDP
Sbjct: 289 AAFLVLPNRLLVPLVPDLQDVAQLRSPLPRGIIRIHLLAARGLSSKDKYVKGLIEGKSDP 348

Query: 288 YAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEV 332
           YA+V +       + V+D  LNP W +T+E+I  +   Q +  EV
Sbjct: 349 YALVRVG-TQTFCSRVIDEELNPHWGETYEVIVHEVPGQEIEVEV 392

May play a role as calcium-regulated intrinsic membrane protein.

Mus musculus (taxid: 10090)

>sp|Q9Z1X1|ESYT1_RAT Extended synaptotagmin-1 OS=Rattus norvegicus GN=Esyt1 PE=2 SV=1

 Score =  130 bits (326), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/345 (28%), Positives = 178/345 (51%), Gaps = 33/345 (9%)

Query: 5   SGVFMGMI-FGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNF----- 58
           +G+ +G + FG+AL  GWR   R R  K  +  A  ++L     DD ++I  +       
Sbjct: 66  AGLSVGFVLFGLALYLGWR---RVRDGKERSLRAARQLL-----DDEERITAETLYMSHR 117

Query: 59  --PVWISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKL 116
             P W+SFP  E+ +WLNK + ++WPF+    E ++ E+V P +     P + +  F+++
Sbjct: 118 ELPAWVSFPDVEKAEWLNKIVVQVWPFLGQYMEKLLAETVAPAVRGAN-PHLQTFTFTRV 176

Query: 117 SLGNVAPKIEGIRVQ-SLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFT 175
            LG    +I G++V  S ++ QI +D++  + GD  I + V+     +    +K +Q+  
Sbjct: 177 ELGEKPVRIIGVKVHPSQRKDQILLDLNVSYVGDLQIDVEVKKYFCKA---GVKGMQLHG 233

Query: 176 VIRVIFQ-LAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSII 234
           V+RVI + L  ++P + AV +  +  P   I++T      +L  IPG++ + D  +   I
Sbjct: 234 VLRVILEPLIGDLPIVGAVSMFFIKRPTLDINWTGMT---NLLDIPGLSSLSDTMIMDSI 290

Query: 235 TDMLQWPHRIVVPIGGIPVDTSELELK-PQGKVAVTIVKANNLKNME------MIGKSDP 287
              L  P+R++VP+     D ++L    P+G + + ++ A  L + +      + GKSDP
Sbjct: 291 AAFLVLPNRLLVPLVPDLQDVAQLRSPLPRGIIRIHLLAARGLSSKDKYVKGLIEGKSDP 350

Query: 288 YAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEV 332
           YA+V +       + V+D  LNP W +T+E+I  +   Q +  EV
Sbjct: 351 YALVRVG-TQTFCSRVIDEELNPHWGETYEVIVHEVPGQEIEVEV 394

May play a role as calcium-regulated intrinsic membrane protein.

Rattus norvegicus (taxid: 10116)

>sp|Q5DTI8|ESYT3_MOUSE Extended synaptotagmin-3 OS=Mus musculus GN=Esyt3 PE=2 SV=2

 Score =  127 bits (320), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 97/331 (29%), Positives = 167/331 (50%), Gaps = 22/331 (6%)

Query: 11  MIFGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNFPVWISFPVYEQV 70
           ++ G  L   WR   R R  K     A  + L        +++ G + P WI FP  E+V
Sbjct: 66  LLLGALLWMWWR---RNRRGKLGRLEAAFEFLEHEREFISRELRGQHLPAWIHFPDVERV 122

Query: 71  KWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRV 130
           +W NK + ++WP+++   E  I+E +EP + E +   + +  F+KL  G   PK+ G++V
Sbjct: 123 EWANKIIIQIWPYLSMIMENKIREKLEPKIRE-KSIHLRTFTFTKLYFGQKCPKVNGVKV 181

Query: 131 QSLKQGQ--ITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVIFQ-LAEEI 187
            + K+ +  +T+D+   + GD  I + ++        +QL+       +RVI + L  + 
Sbjct: 182 HTDKRNRRKVTLDLQICYIGDCEISVELQKIRGGVSGVQLQG-----TLRVILEPLLVDK 236

Query: 188 PCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQWPHRIVVP 247
           P I AV V  L +P  +I++T      +L  +PGI ++ D  ++ +I   L  P+R+ VP
Sbjct: 237 PFIGAVTVFFLQKPHLQINWTGLT---NLLDMPGINELSDSLLEDLIAAHLVLPNRVTVP 293

Query: 248 I-GGIPVDTSELELKPQGKVAVTIVKANNLKNME----MIGKSDPYAVVHIKPLFKVKTN 302
           +  G+ V    + L P G + V +++A  L   +    + GKSDPYA V I  L   ++ 
Sbjct: 294 VKKGLDVTNLRVPL-PCGVIRVHLLEAKKLAQKDNFLGLGGKSDPYAKVSIG-LQHCRSR 351

Query: 303 VVDNNLNPVWNQTFELIAEDKETQSLIFEVY 333
            +  NLNP WN+ FE +  +   Q L  ++Y
Sbjct: 352 TIYKNLNPTWNEVFEFMVYEVPGQDLEVDLY 382

May play a role as calcium-regulated intrinsic membrane protein.

Mus musculus (taxid: 10090)

>sp|A0FGR9|ESYT3_HUMAN Extended synaptotagmin-3 OS=Homo sapiens GN=ESYT3 PE=2 SV=1

 Score =  127 bits (320), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/331 (28%), Positives = 164/331 (49%), Gaps = 22/331 (6%)

Query: 11  MIFGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNFPVWISFPVYEQV 70
           ++ G  L   WR   R R  K    AA  + L +      +++ G + P WI FP  E+V
Sbjct: 62  LLLGALLWMWWR---RNRRGKLGRLAAAFEFLDNEREFISRELRGQHLPAWIHFPDVERV 118

Query: 71  KWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRV 130
           +W NK +S+ WP+++   E   +E +EP + E +   + +  F+KL  G   P++ G++ 
Sbjct: 119 EWANKIISQTWPYLSMIMESKFREKLEPKIRE-KSIHLRTFTFTKLYFGQKCPRVNGVKA 177

Query: 131 Q--SLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVIFQ-LAEEI 187
              +  + ++T+D+   + GD  I + ++        IQL+       +RVI + L  + 
Sbjct: 178 HTNTCNRRRVTVDLQICYIGDCEISVELQKIQAGVNGIQLQG-----TLRVILEPLLVDK 232

Query: 188 PCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQWPHRIVVP 247
           P + AV V  L +P  +I++T      +L   PGI D+ D  ++ +I   L  P+R+ VP
Sbjct: 233 PFVGAVTVFFLQKPHLQINWTGLT---NLLDAPGINDVSDSLLEDLIATHLVLPNRVTVP 289

Query: 248 I-GGIPVDTSELELKPQGKVAVTIVKANNLKNME----MIGKSDPYAVVHIKPLFKVKTN 302
           +  G+ +      L P G + V +++A  L   +    + GKSDPYA V I  L   ++ 
Sbjct: 290 VKKGLDLTNLRFPL-PCGVIRVHLLEAEQLAQKDNFLGLRGKSDPYAKVSIG-LQHFRSR 347

Query: 303 VVDNNLNPVWNQTFELIAEDKETQSLIFEVY 333
            +  NLNP WN+ FE +  +   Q L  ++Y
Sbjct: 348 TIYRNLNPTWNEVFEFMVYEVPGQDLEVDLY 378

May play a role as calcium-regulated intrinsic membrane protein.

Homo sapiens (taxid: 9606)

>sp|Q9BSJ8|ESYT1_HUMAN Extended synaptotagmin-1 OS=Homo sapiens GN=ESYT1 PE=1 SV=1

 Score =  125 bits (315), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 95/339 (28%), Positives = 174/339 (51%), Gaps = 23/339 (6%)

Query: 6   GVFMGMI-FGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKI--CGDNFPVWI 62
           G+ +G + FG+AL  GWR   R R  K  +  A  ++L    +   K +       P W+
Sbjct: 75  GLSVGFVLFGLALYLGWR---RVRDEKERSLRAARQLLDDEEQLTAKTLYMSHRELPAWV 131

Query: 63  SFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGNVA 122
           SFP  E+ +WLNK ++++WPF+    E ++ E+V P +     P + +  F+++ LG   
Sbjct: 132 SFPDVEKAEWLNKIVAQVWPFLGQYMEKLLAETVAPAVRGSN-PHLQTFTFTRVELGEKP 190

Query: 123 PKIEGIRVQ-SLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVIF 181
            +I G++V    ++ QI +D++  + GD  I + V+     +    +K +Q+  V+RVI 
Sbjct: 191 LRIIGVKVHPGQRKEQILLDLNISYVGDVQIDVEVKKYFCKA---GVKGMQLHGVLRVIL 247

Query: 182 Q-LAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQW 240
           + L  ++P + AV +  +  P   I++T      +L  IPG++ + D  +   I   L  
Sbjct: 248 EPLIGDLPFVGAVSMFFIRRPTLDINWTGMT---NLLDIPGLSSLSDTMIMDSIAAFLVL 304

Query: 241 PHRIVVPIGGIPVDTSELELK-PQGKVAVTIVKANNLKNME------MIGKSDPYAVVHI 293
           P+R++VP+     D ++L    P+G + + ++ A  L + +      + GKSDPYA+V +
Sbjct: 305 PNRLLVPLVPDLQDVAQLRSPLPRGIIRIHLLAARGLSSKDKYVKGLIEGKSDPYALVRL 364

Query: 294 KPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEV 332
                  + V+D  LNP W +T+E++  +   Q +  EV
Sbjct: 365 G-TQTFCSRVIDEELNPQWGETYEVMVHEVPGQEIEVEV 402

May play a role as calcium-regulated intrinsic membrane protein.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	379
225453818	513	PREDICTED: tricalbin-1 [Vitis vinifera]	0.875	0.647	0.885	1e-174
356505439	535	PREDICTED: extended synaptotagmin-2-like	0.875	0.620	0.876	1e-172
356520501	524	PREDICTED: extended synaptotagmin-2-like	0.875	0.633	0.870	1e-171
255541372	515	calcium lipid binding protein, putative	0.878	0.646	0.855	1e-171
449454506	507	PREDICTED: synaptotagmin-5-like [Cucumis	0.878	0.656	0.852	1e-170
449498883	507	PREDICTED: LOW QUALITY PROTEIN: synaptot	0.878	0.656	0.849	1e-169
224127446	500	integral membrane single C2 domain prote	0.878	0.666	0.837	1e-168
224063933	500	integral membrane single C2 domain prote	0.878	0.666	0.837	1e-168
357514731	513	Extended synaptotagmin-3 [Medicago trunc	0.878	0.649	0.852	1e-168
356532074	535	PREDICTED: extended synaptotagmin-2-like	0.875	0.620	0.840	1e-166

>gi|225453818|ref|XP_002276807.1| PREDICTED: tricalbin-1 [Vitis vinifera]

 Score =  617 bits (1591), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 294/332 (88%), Positives = 317/332 (95%)

Query: 1   MGLISGVFMGMIFGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNFPV 60
           MGLISG+ MG IFGIALMAGW HMMRYRS KR+AKA DIK+LGSLNR+DLKKICGDNFP 
Sbjct: 1   MGLISGILMGTIFGIALMAGWVHMMRYRSIKRVAKAVDIKLLGSLNREDLKKICGDNFPE 60

Query: 61  WISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGN 120
           WISFPVYEQVKWLNK+L+KLWPFVADAA LVI+ESVEPLLE+YRPPGITSLKFSKLSLGN
Sbjct: 61  WISFPVYEQVKWLNKQLTKLWPFVADAATLVIRESVEPLLEDYRPPGITSLKFSKLSLGN 120

Query: 121 VAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVI 180
           VAPKIEGIRVQSLK+GQI MDID RWGGDPSIIL VEAA+VASIPIQLKDLQVFTV RVI
Sbjct: 121 VAPKIEGIRVQSLKKGQIIMDIDLRWGGDPSIILAVEAALVASIPIQLKDLQVFTVARVI 180

Query: 181 FQLAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQW 240
           FQLAEEIPCISAV+VALLSEPKPRIDYTLKAVGGSLTA+PGI+DMIDDTV++IITDMLQW
Sbjct: 181 FQLAEEIPCISAVIVALLSEPKPRIDYTLKAVGGSLTALPGISDMIDDTVNTIITDMLQW 240

Query: 241 PHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVK 300
           PHRIVVPIGG+PVDTSELELKPQGK+ +TIVKAN+LKNMEMIGKSDPY VVHI+PLFK+K
Sbjct: 241 PHRIVVPIGGMPVDTSELELKPQGKLTLTIVKANDLKNMEMIGKSDPYVVVHIRPLFKIK 300

Query: 301 TNVVDNNLNPVWNQTFELIAEDKETQSLIFEV 332
           T V++NNLNPVWNQTFELIAEDKETQSLI EV
Sbjct: 301 TKVIENNLNPVWNQTFELIAEDKETQSLILEV 332

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505439|ref|XP_003521498.1| PREDICTED: extended synaptotagmin-2-like [Glycine max]

 Score =  612 bits (1578), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 291/332 (87%), Positives = 315/332 (94%)

Query: 1   MGLISGVFMGMIFGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNFPV 60
           MGL SG+FMG++FGIALMAGW  MMRYRS KRIAKAADIK+LGSLNRDDLKKICGDN P 
Sbjct: 1   MGLFSGIFMGVLFGIALMAGWARMMRYRSAKRIAKAADIKLLGSLNRDDLKKICGDNLPE 60

Query: 61  WISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGN 120
           WISFPVYEQVKWLNK+L+KLWPFVA+AA LVI+ESVEPLLEEYRPPGITSLKFSKLSLGN
Sbjct: 61  WISFPVYEQVKWLNKKLTKLWPFVAEAATLVIRESVEPLLEEYRPPGITSLKFSKLSLGN 120

Query: 121 VAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVI 180
           VAPKIEGIRVQSL +GQI MDIDFRWGGDPSIIL VEAA+VASIPIQLKDLQVFT++RVI
Sbjct: 121 VAPKIEGIRVQSLTKGQIIMDIDFRWGGDPSIILAVEAALVASIPIQLKDLQVFTIVRVI 180

Query: 181 FQLAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQW 240
           FQLAEEIPCISAVVVALL+EPKPRIDYTLKAVGGSLTAIPGI+DMIDDTV+SI+TDMLQW
Sbjct: 181 FQLAEEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTAIPGISDMIDDTVNSIVTDMLQW 240

Query: 241 PHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVK 300
           PHRIVVP+GGIPVDTSELELKPQGK+A+T+VKA  LKNMEMIGKSDPY VVHI+PLFK K
Sbjct: 241 PHRIVVPLGGIPVDTSELELKPQGKLALTVVKATALKNMEMIGKSDPYVVVHIRPLFKYK 300

Query: 301 TNVVDNNLNPVWNQTFELIAEDKETQSLIFEV 332
           T V+DNNLNP+WN+ FELIAEDKETQSLI EV
Sbjct: 301 TKVIDNNLNPIWNEKFELIAEDKETQSLILEV 332

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520501|ref|XP_003528900.1| PREDICTED: extended synaptotagmin-2-like [Glycine max]

 Score =  608 bits (1569), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 289/332 (87%), Positives = 314/332 (94%)

Query: 1   MGLISGVFMGMIFGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNFPV 60
           MGL SG+FMG++FGIALMAGW  MM+YRS KRIAKAADIK+LGSLNRDDLKKICGDN P 
Sbjct: 1   MGLFSGIFMGVLFGIALMAGWARMMKYRSAKRIAKAADIKLLGSLNRDDLKKICGDNLPE 60

Query: 61  WISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGN 120
           WISFPVYEQVKWLNK+L+KLWPFVA+AA +VI+ESVEPLLEEYRPPGITSLKFSKLSLGN
Sbjct: 61  WISFPVYEQVKWLNKKLTKLWPFVAEAATMVIRESVEPLLEEYRPPGITSLKFSKLSLGN 120

Query: 121 VAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVI 180
           VAPKIEGIRVQSL +GQI MDIDFRWGGDPSIIL VEAA+VASIPIQLKDLQVFT++RVI
Sbjct: 121 VAPKIEGIRVQSLTKGQIIMDIDFRWGGDPSIILAVEAALVASIPIQLKDLQVFTIVRVI 180

Query: 181 FQLAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQW 240
           FQLAEEIPCISAVVVALL+EPKPRIDYTLKAVGGSLTAIPGI+DMIDDTV+SI+TDMLQW
Sbjct: 181 FQLAEEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTAIPGISDMIDDTVNSIVTDMLQW 240

Query: 241 PHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVK 300
           PHRIVVP+GGIPVDTSELELKPQGK+A+T+VKA  LKNMEMIGKSDPY VVHI+PLFK K
Sbjct: 241 PHRIVVPLGGIPVDTSELELKPQGKLALTVVKATALKNMEMIGKSDPYVVVHIRPLFKYK 300

Query: 301 TNVVDNNLNPVWNQTFELIAEDKETQSLIFEV 332
           T V+DNNLNP WN+ FELIAEDKETQSLI EV
Sbjct: 301 TKVIDNNLNPTWNEKFELIAEDKETQSLILEV 332

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541372|ref|XP_002511750.1| calcium lipid binding protein, putative [Ricinus communis] gi|223548930|gb|EEF50419.1| calcium lipid binding protein, putative [Ricinus communis]

 Score =  607 bits (1564), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 285/333 (85%), Positives = 319/333 (95%)

Query: 1   MGLISGVFMGMIFGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNFPV 60
           MGLISG+FMGMIFGIA+MAGW+HMMRYRSTKRIAKA DIK+LGSLNRDDLKKICGDNFP 
Sbjct: 1   MGLISGIFMGMIFGIAVMAGWKHMMRYRSTKRIAKAVDIKLLGSLNRDDLKKICGDNFPD 60

Query: 61  WISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGN 120
           WISFPV+EQVKWLNK+LSKLWPFVADAA +V+KESVEPLLE+YRPPGITSLKF+K SLG 
Sbjct: 61  WISFPVFEQVKWLNKQLSKLWPFVADAATMVVKESVEPLLEDYRPPGITSLKFNKFSLGT 120

Query: 121 VAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVI 180
           V PKIEGIRVQSLK+GQI MDIDFRWGGDPSIILGVEAA+VASIPIQLKDL+V+TVIRVI
Sbjct: 121 VPPKIEGIRVQSLKKGQIIMDIDFRWGGDPSIILGVEAALVASIPIQLKDLEVYTVIRVI 180

Query: 181 FQLAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQW 240
           FQLAEEIPCISAVV+ALLSEPKP+IDY LKAVGGSLTAIPG++DMIDDTV SI+TDMLQW
Sbjct: 181 FQLAEEIPCISAVVIALLSEPKPKIDYVLKAVGGSLTAIPGLSDMIDDTVHSIVTDMLQW 240

Query: 241 PHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVK 300
           PHR+VVPIGGIPVDTSELELKP+GK+ VT+VKAN+LKNMEMIGKSDPY V++I+P+FKVK
Sbjct: 241 PHRVVVPIGGIPVDTSELELKPEGKLTVTVVKANDLKNMEMIGKSDPYVVLYIRPMFKVK 300

Query: 301 TNVVDNNLNPVWNQTFELIAEDKETQSLIFEVY 333
           +  ++NNLNPVW+QTFE+IAEDKETQSLI EV+
Sbjct: 301 SRTIENNLNPVWDQTFEMIAEDKETQSLILEVF 333

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454506|ref|XP_004144995.1| PREDICTED: synaptotagmin-5-like [Cucumis sativus] gi|449474835|ref|XP_004154298.1| PREDICTED: synaptotagmin-5-like [Cucumis sativus]

 Score =  602 bits (1553), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 284/333 (85%), Positives = 317/333 (95%)

Query: 1   MGLISGVFMGMIFGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNFPV 60
           MGLISG+FMG+IFGIALMAGW+HMMR+RSTKR+AKAAD+KILGSL+RDDLKK+CGDNFP 
Sbjct: 1   MGLISGIFMGVIFGIALMAGWQHMMRHRSTKRVAKAADMKILGSLSRDDLKKLCGDNFPE 60

Query: 61  WISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGN 120
           WISFPVYEQVKWLNK LSK+WPFVADAAELVIKESVEPLLEEY+PPGITSLKFSKLSLG+
Sbjct: 61  WISFPVYEQVKWLNKLLSKMWPFVADAAELVIKESVEPLLEEYKPPGITSLKFSKLSLGS 120

Query: 121 VAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVI 180
           VAPKIEGIRVQSLK+GQITMDIDFRWGGDPSIIL VEAA+VASIPIQLKDLQVFTVIRVI
Sbjct: 121 VAPKIEGIRVQSLKKGQITMDIDFRWGGDPSIILAVEAALVASIPIQLKDLQVFTVIRVI 180

Query: 181 FQLAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQW 240
           FQLAEEIPCISAVVVALL+EP+P+I Y LKAVGGSLTAIPGI+DMIDDTV++I+TDML+W
Sbjct: 181 FQLAEEIPCISAVVVALLAEPEPKIVYNLKAVGGSLTAIPGISDMIDDTVNTIVTDMLKW 240

Query: 241 PHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVK 300
           PHRIV+ IGGIPVD SELELKPQG++ VT+VKANNLKNMEMIGKSDPY V H++PLFK+K
Sbjct: 241 PHRIVLQIGGIPVDISELELKPQGRLTVTVVKANNLKNMEMIGKSDPYVVAHVRPLFKLK 300

Query: 301 TNVVDNNLNPVWNQTFELIAEDKETQSLIFEVY 333
           T  ++NNLNPVWN+  + I EDKETQS+IFEVY
Sbjct: 301 TKTIENNLNPVWNEELDFIVEDKETQSIIFEVY 333

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449498883|ref|XP_004160660.1| PREDICTED: LOW QUALITY PROTEIN: synaptotagmin-5-like [Cucumis sativus]

 Score =  600 bits (1547), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 283/333 (84%), Positives = 316/333 (94%)

Query: 1   MGLISGVFMGMIFGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNFPV 60
           MGLISG+FMG+IFGIALMAGW+HMMR+RSTKR+AKAAD+KILGSL+RDDLKK+CGDNFP 
Sbjct: 1   MGLISGIFMGVIFGIALMAGWQHMMRHRSTKRVAKAADMKILGSLSRDDLKKLCGDNFPE 60

Query: 61  WISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGN 120
           WISFPVYEQVKWLNK LSK+WPFVADAAELVIKESVEPLLEEY+PPGITSLKFSKLSLG+
Sbjct: 61  WISFPVYEQVKWLNKLLSKMWPFVADAAELVIKESVEPLLEEYKPPGITSLKFSKLSLGS 120

Query: 121 VAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVI 180
           VAPKIEGIRVQSLK+GQITMDIDFRWGGDPSIIL VEAA+VASIPIQLKDLQVFTVIRVI
Sbjct: 121 VAPKIEGIRVQSLKKGQITMDIDFRWGGDPSIILAVEAALVASIPIQLKDLQVFTVIRVI 180

Query: 181 FQLAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQW 240
           FQLAEEIPCISAVVVALL+EP+P+I Y LKAVGGSLTAIPGI+DMIDDTV++I+TDML+W
Sbjct: 181 FQLAEEIPCISAVVVALLAEPEPKIVYNLKAVGGSLTAIPGISDMIDDTVNTIVTDMLKW 240

Query: 241 PHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVK 300
           PHRIV+ IGGIPVD SELELKPQG++ VT+VKANNLKNMEMIGKSDPY V H++PLFK+K
Sbjct: 241 PHRIVLQIGGIPVDISELELKPQGRLTVTVVKANNLKNMEMIGKSDPYVVAHVRPLFKLK 300

Query: 301 TNVVDNNLNPVWNQTFELIAEDKETQSLIFEVY 333
              ++NNLNPVWN+  + I EDKETQS+IFEVY
Sbjct: 301 XKTIENNLNPVWNEELDFIVEDKETQSIIFEVY 333

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127446|ref|XP_002320076.1| integral membrane single C2 domain protein [Populus trichocarpa] gi|222860849|gb|EEE98391.1| integral membrane single C2 domain protein [Populus trichocarpa]

 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 279/333 (83%), Positives = 316/333 (94%)

Query: 1   MGLISGVFMGMIFGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNFPV 60
           MGLISG+F+G+IFGI LMAGW+HMM+YRSTKR+AKA DIK+LGSLNRDDLKKICGDNFP 
Sbjct: 1   MGLISGIFLGIIFGIGLMAGWKHMMQYRSTKRVAKAVDIKLLGSLNRDDLKKICGDNFPD 60

Query: 61  WISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGN 120
           WISFP +EQVKWLNK+L KLWPFVA+AA LV+KESVEPLLE+YRPPGITSLKF+K SLG 
Sbjct: 61  WISFPAFEQVKWLNKQLGKLWPFVAEAAALVVKESVEPLLEDYRPPGITSLKFNKFSLGT 120

Query: 121 VAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVI 180
           V PKIEGIRVQSLKQG++TMDID RW GDPSIILGVEAA+VASIPIQLKDL+V+TVIRVI
Sbjct: 121 VPPKIEGIRVQSLKQGEVTMDIDLRWCGDPSIILGVEAALVASIPIQLKDLEVYTVIRVI 180

Query: 181 FQLAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQW 240
           F LAEEIPCISA+V+ALL+EPKP+I+Y LKAVGGSL A+PG++DMIDDTV+SI+TDMLQW
Sbjct: 181 FHLAEEIPCISALVIALLAEPKPKIEYVLKAVGGSLAALPGVSDMIDDTVNSIVTDMLQW 240

Query: 241 PHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVK 300
           PHRIVVP+GGIPVDTSELELKPQGK+ VT+VKAN+LKNMEMIGKSDPYAVV+I+P+FKVK
Sbjct: 241 PHRIVVPLGGIPVDTSELELKPQGKLTVTVVKANDLKNMEMIGKSDPYAVVYIRPMFKVK 300

Query: 301 TNVVDNNLNPVWNQTFELIAEDKETQSLIFEVY 333
           T VVDNNLNPVWNQTF+LIAEDKETQSLI EV+
Sbjct: 301 TQVVDNNLNPVWNQTFDLIAEDKETQSLILEVF 333

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063933|ref|XP_002301308.1| integral membrane single C2 domain protein [Populus trichocarpa] gi|222843034|gb|EEE80581.1| integral membrane single C2 domain protein [Populus trichocarpa]

 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 279/333 (83%), Positives = 316/333 (94%)

Query: 1   MGLISGVFMGMIFGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNFPV 60
           MGLISG+F+G++FGI LMAGW+HMM+YRSTKR+AKA DIK+LGSLNRDDLKKICGDNFP 
Sbjct: 1   MGLISGLFLGIVFGIGLMAGWKHMMQYRSTKRVAKAVDIKLLGSLNRDDLKKICGDNFPD 60

Query: 61  WISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGN 120
           WISFP +EQVKWLNK+L KLWPFVA+AA  V+KESVEPLLE+YRPPGITSLKF+K SLG 
Sbjct: 61  WISFPAFEQVKWLNKQLGKLWPFVAEAATAVVKESVEPLLEDYRPPGITSLKFNKFSLGT 120

Query: 121 VAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVI 180
           V PKIEGIRVQSLKQGQ+TMDID RW GDPSIILGVEAA+VASIPIQLKDL+V+TVIRVI
Sbjct: 121 VPPKIEGIRVQSLKQGQVTMDIDLRWCGDPSIILGVEAALVASIPIQLKDLEVYTVIRVI 180

Query: 181 FQLAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQW 240
           FQLAEEIPCISAVV+ALLSEPKP+I+Y LKAVGGSLTA+PG++DMIDDTV+SI+TDMLQW
Sbjct: 181 FQLAEEIPCISAVVIALLSEPKPKIEYILKAVGGSLTALPGVSDMIDDTVNSIVTDMLQW 240

Query: 241 PHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVK 300
           PHRIVVPIGGIPVD SELEL+PQGK+ VT+VKAN+LKNMEMIGKSDPYAVV+++P+FKVK
Sbjct: 241 PHRIVVPIGGIPVDISELELRPQGKLTVTVVKANDLKNMEMIGKSDPYAVVYVRPMFKVK 300

Query: 301 TNVVDNNLNPVWNQTFELIAEDKETQSLIFEVY 333
           T V+DNNLNPVWNQTF+LIAEDKETQSLI EV+
Sbjct: 301 TQVIDNNLNPVWNQTFDLIAEDKETQSLILEVF 333

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357514731|ref|XP_003627654.1| Extended synaptotagmin-3 [Medicago truncatula] gi|355521676|gb|AET02130.1| Extended synaptotagmin-3 [Medicago truncatula]

 Score =  595 bits (1535), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 284/333 (85%), Positives = 312/333 (93%)

Query: 1   MGLISGVFMGMIFGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNFPV 60
           MGLISG+FMGM+FGIALMAGW  MMRYRS KRIAKA DIKILGSLNR+DLKKICG+N P 
Sbjct: 1   MGLISGIFMGMLFGIALMAGWARMMRYRSAKRIAKAVDIKILGSLNREDLKKICGENLPE 60

Query: 61  WISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGN 120
           WISFPVYEQVKWLNK LSKLWPFVA+AA +VIKESVEPLLEEYRPPGITSLKFSKLSLGN
Sbjct: 61  WISFPVYEQVKWLNKLLSKLWPFVAEAATMVIKESVEPLLEEYRPPGITSLKFSKLSLGN 120

Query: 121 VAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVI 180
           VAPKIEGIRVQSL +GQI MD+D RWGGDPSIIL VEAA+VASIPIQLKDL+VFT+ RVI
Sbjct: 121 VAPKIEGIRVQSLTKGQIIMDVDLRWGGDPSIILAVEAALVASIPIQLKDLKVFTIARVI 180

Query: 181 FQLAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQW 240
           FQLAEEIPCISAVVVALL+EPKPRIDYTLKAVGGSLTA+PGI+DMIDDTV++I+TDMLQW
Sbjct: 181 FQLAEEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTALPGISDMIDDTVNTIVTDMLQW 240

Query: 241 PHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVK 300
           PHRIVVP+GGIPVD S+LELKP G + VTIVKA +LKNMEMIGKSDPY V++I+PLFKVK
Sbjct: 241 PHRIVVPLGGIPVDISDLELKPHGSLKVTIVKATDLKNMEMIGKSDPYVVLYIRPLFKVK 300

Query: 301 TNVVDNNLNPVWNQTFELIAEDKETQSLIFEVY 333
           T V++NNLNPVW+QTFELIAEDKETQSLI EV+
Sbjct: 301 TKVINNNLNPVWDQTFELIAEDKETQSLILEVF 333

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532074|ref|XP_003534599.1| PREDICTED: extended synaptotagmin-2-like [Glycine max]

 Score =  590 bits (1522), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 280/333 (84%), Positives = 312/333 (93%), Gaps = 1/333 (0%)

Query: 1   MGLISGVFMGMIFGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNFPV 60
           MGL SG+F+GM+ GIALMA W+ MM YRS KRIAKA DIK+LGSLNRDDLKKICGDNFP 
Sbjct: 1   MGLFSGIFLGMVLGIALMAAWQRMMTYRSAKRIAKAVDIKLLGSLNRDDLKKICGDNFPE 60

Query: 61  WISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGN 120
           WISFP+YEQVKWLNK+LSKLWPFVADAA LVI+ESVEPLLEEYRP GI+SLKFSKLSLGN
Sbjct: 61  WISFPIYEQVKWLNKQLSKLWPFVADAATLVIRESVEPLLEEYRPTGISSLKFSKLSLGN 120

Query: 121 VAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVI 180
           VAPKIEGIRVQSL +GQI MDIDFRWGGDP+I+L VEA +VASIPIQLKDLQVFT+IRVI
Sbjct: 121 VAPKIEGIRVQSLNKGQIIMDIDFRWGGDPNIVLAVEA-LVASIPIQLKDLQVFTIIRVI 179

Query: 181 FQLAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQW 240
           FQLA+EIPCISAVVVALL+EPKPRIDYTLKAVGGSLTA+PGI+DMIDD V+SI+TD LQW
Sbjct: 180 FQLADEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTALPGISDMIDDMVNSIVTDTLQW 239

Query: 241 PHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVK 300
           PHRIVVP+GGIPVDTSELELKPQG + VT++KAN+LKNMEMIGKSDPYAV++I+PLFKVK
Sbjct: 240 PHRIVVPLGGIPVDTSELELKPQGTLRVTVIKANDLKNMEMIGKSDPYAVLYIRPLFKVK 299

Query: 301 TNVVDNNLNPVWNQTFELIAEDKETQSLIFEVY 333
           T V+DNNLNPVWN+ F+LIAEDKETQSLI EV+
Sbjct: 300 TKVIDNNLNPVWNEVFDLIAEDKETQSLIVEVF 332

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	379
TAIR|locus:2100992	510	NTMC2T4 [Arabidopsis thaliana	0.875	0.650	0.792	2.2e-146
TAIR|locus:2201036	560	NTMC2T2.1 "AT1G05500" [Arabido	0.868	0.587	0.424	4.1e-72
TAIR|locus:2184931	569	SYTD "AT5G11100" [Arabidopsis	0.868	0.578	0.424	1.1e-71
TAIR|locus:2146688	540	SYTC "AT5G04220" [Arabidopsis	0.833	0.585	0.324	6.2e-46
TAIR|locus:2198581	537	SYTB "AT1G20080" [Arabidopsis	0.849	0.599	0.309	1.7e-43
WB|WBGene00020443	713	esyt-2 [Caenorhabditis elegans	0.704	0.374	0.294	2.9e-33
MGI|MGI:1344426	1092	Esyt1 "extended synaptotagmin-	0.839	0.291	0.287	5.8e-32
RGD|3053	1088	Esyt1 "extended synaptotagmin-	0.839	0.292	0.287	1.5e-31
UNIPROTKB|Q9BSJ8	1104	ESYT1 "Extended synaptotagmin-	0.836	0.287	0.282	8.9e-31
UNIPROTKB|A0FGR9	886	ESYT3 "Extended synaptotagmin-	0.815	0.348	0.293	1.2e-30

TAIR|locus:2100992 NTMC2T4 [Arabidopsis thaliana (taxid:3702)]

 Score = 1430 (508.4 bits), Expect = 2.2e-146, P = 2.2e-146
 Identities = 264/333 (79%), Positives = 307/333 (92%)

Query:     1 MGLISGVFMGMIFGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNFPV 60
             MGLISG+  G+IFG+ALMAGW  MM +RS+KR+AKA D+K+LGSL+RDDLKKICGDNFP 
Sbjct:     1 MGLISGILFGIIFGVALMAGWSRMMTHRSSKRVAKAVDMKLLGSLSRDDLKKICGDNFPQ 60

Query:    61 WISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGN 120
             WISFP +EQVKWLNK LSK+WP++A+AA +VI++SVEPLLE+YRPPGITSLKFSKL+LGN
Sbjct:    61 WISFPAFEQVKWLNKLLSKMWPYIAEAATMVIRDSVEPLLEDYRPPGITSLKFSKLTLGN 120

Query:   121 VAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVI 180
             VAPKIEGIRVQS K+GQ+TMD+D RWGGDP+I+LGV  A+VASIPIQLKDLQVFTV RVI
Sbjct:   121 VAPKIEGIRVQSFKEGQVTMDVDLRWGGDPNIVLGV-TALVASIPIQLKDLQVFTVARVI 179

Query:   181 FQLAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQW 240
             FQLA+EIPCISAVVVALL+EPKPRIDYTLKAVGGSLTAIPG++DMIDDTVD+I+ DMLQW
Sbjct:   180 FQLADEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTAIPGLSDMIDDTVDTIVKDMLQW 239

Query:   241 PHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVK 300
             PHRIVVPIGGIPVD S+LELKPQGK+ VT+VKA NLKN E+IGKSDPYA ++I+P+FK K
Sbjct:   240 PHRIVVPIGGIPVDLSDLELKPQGKLIVTVVKATNLKNKELIGKSDPYATIYIRPVFKYK 299

Query:   301 TNVVDNNLNPVWNQTFELIAEDKETQSLIFEVY 333
             T  ++NNLNPVW+QTFELIAEDKETQSL  EV+
Sbjct:   300 TKAIENNLNPVWDQTFELIAEDKETQSLTVEVF 332

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008289 "lipid binding" evidence=ISS;IDA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009958 "positive gravitropism" evidence=IMP

GO:0031965 "nuclear membrane" evidence=IDA

GO:0043565 "sequence-specific DNA binding" evidence=IDA;IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2201036 NTMC2T2.1 "AT1G05500" [Arabidopsis thaliana (taxid:3702)]

 Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
 Identities = 143/337 (42%), Positives = 221/337 (65%)

Query:     1 MGLISGVFMGMIFGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNF-P 59
             MG I GV +G++ GIA++ G+  +   RS  R   A  +     +  +D +K+    F P
Sbjct:     1 MGFIVGVVIGLLVGIAIIIGFVKLENSRSKLRSELANTVAAFARMTVEDSRKLLPPEFYP 60

Query:    60 VWISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLG 119
              W+ F   +++ WLN  L+K+WP+V +AA  +IK SVEP+LE+YRP  + SL FSKL+LG
Sbjct:    61 SWVVFSERQKLTWLNHHLTKIWPYVDEAASELIKASVEPVLEQYRPAIVASLTFSKLTLG 120

Query:   120 NVAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRV 179
              VAP+  G+ V    +  IT+++D +W G+P+I+LGV+  +  S+PIQ+K++    V R+
Sbjct:   121 TVAPQFTGVSVIDGDKNGITLELDMQWDGNPNIVLGVKTLVGVSLPIQVKNIGFTGVFRL 180

Query:   180 IFQ-LAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDML 238
             IF+ L E+ PC  AV V+L    K ++D+TLK VGG ++AIPG+++ I++T+   + D +
Sbjct:   181 IFRPLVEDFPCFGAVSVSL--REKKKLDFTLKVVGGDISAIPGLSEAIEETIRDAVEDSI 238

Query:   239 QWPHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLF- 297
              WP R V+PI  IP D S+LELKP G + V +V+A NL N +++GKSDP+A + I+PL  
Sbjct:   239 TWPVRKVIPI--IPGDYSDLELKPVGMLEVKLVQAKNLTNKDLVGKSDPFAKMFIRPLRE 296

Query:   298 KVK-TNVVDNNLNPVWNQTFELIAEDKETQSLIFEVY 333
             K K +  ++N+LNP+WN+ FE + ED  TQ L+  +Y
Sbjct:   297 KTKRSKTINNDLNPIWNEHFEFVVEDASTQHLVVRIY 333

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0012505 "endomembrane system" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2184931 SYTD "AT5G11100" [Arabidopsis thaliana (taxid:3702)]

 Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
 Identities = 144/339 (42%), Positives = 214/339 (63%)

Query:     1 MGLISGVFMGMIFGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKIC-GDNFP 59
             MG + G+F+G+     L+  +      RST+R   A  I     +   D +K+  GD +P
Sbjct:     1 MGFLFGLFIGIAVSFGLVVAFARYSSVRSTRRADLAKTIAAFARMTVQDSRKLLPGDFYP 60

Query:    60 VWISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLG 119
              W+ F   +++ WLN EL K+WP+V +AA  +IK SVEP+LE+Y P  + SLKFSK +LG
Sbjct:    61 SWVVFSQRQKLNWLNLELEKIWPYVNEAASELIKSSVEPVLEQYTPAMLASLKFSKFTLG 120

Query:   120 NVAPKIEGIRVQSLKQGQ--ITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVI 177
              VAP+  G+ +   + G   ITM+++ +W G+P I+L V+  +  S+PI++K++    V 
Sbjct:   121 TVAPQFTGVSILESESGPNGITMELEMQWDGNPKIVLDVKTLLGVSLPIEVKNIGFTGVF 180

Query:   178 RVIFQ-LAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITD 236
             R+IF+ L +E PC  A+  +L    K  +D+TLK +GG LT+IPGI+D I++T+   I D
Sbjct:   181 RLIFKPLVDEFPCFGALSYSL--REKKGLDFTLKVIGGELTSIPGISDAIEETIRDAIED 238

Query:   237 MLQWPHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL 296
              + WP R ++PI  +P D S+LELKP GK+ V +V+A +L N +MIGKSDPYA+V I+PL
Sbjct:   239 SITWPVRKIIPI--LPGDYSDLELKPVGKLDVKVVQAKDLANKDMIGKSDPYAIVFIRPL 296

Query:   297 --FKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVY 333
                  KT  + N+LNP+WN+ FE I ED  TQ L   V+
Sbjct:   297 PDRTKKTKTISNSLNPIWNEHFEFIVEDVSTQHLTVRVF 335

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009888 "tissue development" evidence=RCA

GO:0010638 "positive regulation of organelle organization" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

TAIR|locus:2146688 SYTC "AT5G04220" [Arabidopsis thaliana (taxid:3702)]

 Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
 Identities = 110/339 (32%), Positives = 184/339 (54%)

Query:     1 MGLISGVFMGMIFGI-ALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNFP 59
             +G + G+ +G+I G   L+        Y   + + + + I +L  L  D          P
Sbjct:    11 IGFVIGIPIGLILGFFVLIYSQPSHQEYPPARPLVETS-ISVLLDLLPD---------IP 60

Query:    60 VWISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPG-ITSLKFSKLSL 118
             +W+  P YE+V W NK +S +WP++  A   +I+ SV+PL  +Y     I S++F  LSL
Sbjct:    61 LWMKNPDYERVDWFNKFISYMWPYLDKAVCGIIRSSVQPLFADYIGTFCIESIEFENLSL 120

Query:   119 GNVAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIR 178
             G + P + G++     + ++  +   +W G+P+I+L V   +   I +QL DLQ F ++R
Sbjct:   121 GTLPPTVHGVKFYETNEKELLFEPSIKWAGNPNIVL-VLKVLSLRIRVQLVDLQFFAIVR 179

Query:   179 VIFQ-LAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDM 237
             V  + L    PC   VVV+L+   KP +D+ LK +GG L +IPG+   + +T+   ++ M
Sbjct:   180 VALKPLLPTFPCFGMVVVSLME--KPHVDFGLKVLGGDLMSIPGLYRYVQETIKRQVSSM 237

Query:   238 LQWPHRIVVPIGGIPVDTSELELK-PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHI--K 294
               WP  + +PI    +D+S   +K P G + V+I++A NL   +++G SDPY  + +  +
Sbjct:   238 YHWPQVLEIPI----LDSSTASVKKPVGLLHVSILRARNLLKKDLLGTSDPYVKLSLTGE 293

Query:   295 PLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVY 333
              L   KT +   NLNP WN+ F+LI +D  +Q L  EV+
Sbjct:   294 KLPAKKTTIKKRNLNPEWNEHFKLIVKDPNSQVLQLEVF 332

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA

TAIR|locus:2198581 SYTB "AT1G20080" [Arabidopsis thaliana (taxid:3702)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 106/342 (30%), Positives = 191/342 (55%)

Query:     1 MGLISGVF--MGMIFG--IALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGD 56
             MG+IS +   +G  FG  I ++ G+   + ++ST    +  +IK L  L+ + +  +  +
Sbjct:     1 MGIISTILGVIGFGFGTTIGIVIGYYLFIYFQSTD--VEDPEIKPLVELDSETIATMFPE 58

Query:    57 NFPVWISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPP-GITSLKFSK 115
               P+W+  P ++++ WLNK +  +WP++  A   + K   +P++ E  P   I S++F  
Sbjct:    59 -IPMWVKNPDFDRIDWLNKLIGHMWPYMDKAICKMAKSIAKPIIAEQIPNYKIDSVEFEM 117

Query:   116 LSLGNVAPKIEGIRVQSLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFT 175
             L+LG++ P  +G++V +    +I M++  +W G+P+II+ V  A      +Q+ DLQV+ 
Sbjct:   118 LTLGSLPPSFQGMKVYATDDKEIIMELSVKWAGNPNIIV-VAKAFGLKATVQVIDLQVYA 176

Query:   176 VIRVIFQ-LAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSII 234
               R+  + L    PC + + V+L+   KP++D+ LK +G  + AIPG+   + + +   +
Sbjct:   177 TPRITLKPLVPSFPCFANIFVSLMD--KPQVDFGLKLLGADVMAIPGLYRFVQEIIKDQV 234

Query:   235 TDMLQWPHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIK 294
              +M  WP  + V I    +D S+   KP G ++V ++KA  LK  +++G SDPY  + + 
Sbjct:   235 ANMYLWPKTLNVQI----MDPSKAMKKPVGLLSVKVIKAIKLKKKDLLGGSDPYVKLTLS 290

Query:   295 PLFKV---KTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVY 333
                KV   KT V  +NLNP WN+ F+L+ ++ E+Q L   VY
Sbjct:   291 G-DKVPGKKTVVKHSNLNPEWNEEFDLVVKEPESQELQLIVY 331

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009306 "protein secretion" evidence=IMP

WB|WBGene00020443 esyt-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 370 (135.3 bits), Expect = 2.9e-33, P = 2.9e-33
 Identities = 84/285 (29%), Positives = 151/285 (52%)

Query:    57 NFPVWISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKL 116
             + P W+ FP  E+V+WLNK + +LWP+V +  +  + + + P ++   P    + KF+K+
Sbjct:    74 DLPAWVQFPDTERVEWLNKVIHQLWPYVGEYTKTFMNDFIIPQVKAQMPGMFKNFKFTKM 133

Query:   117 SLGNVAPKIEGIRVQSLKQGQ--ITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVF 174
              +G++  ++ GI+V +   G+  I +D+D  + GD    +             + ++Q  
Sbjct:   134 DMGDIPCRVGGIKVYTTNVGRDRIIVDMDVAYAGDADFTVSC-----CGFTGGMNNIQFS 188

Query:   175 TVIRVIFQ-LAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSI 233
               +R I + L    P +  V    L  PK  +D+ L  +G  +  +PG+ D I   ++S 
Sbjct:   189 GKLRAILKPLLPYPPMVGGVSGTFLEMPK--MDFNLTGMG-EMVELPGLIDAIRSVINSQ 245

Query:   234 ITDMLQWPHRIVVPIGGIPVDTSELEL-KPQGKVAVTIVKANNLKNMEMI----GKSDPY 288
             I  +   P+ IVVP+    VD ++L   +P G V + I++A NL+N ++     GKSDPY
Sbjct:   246 IAALCVLPNEIVVPLAP-DVDVTQLYFPEPDGVVRLKIIEAKNLENRDISFIKKGKSDPY 304

Query:   289 AVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVY 333
             A + +   F  KT  +D++LNP+WN+ FE + +  + Q L  E++
Sbjct:   305 AEIQVGSQF-FKTRTIDDDLNPIWNEYFEAVVDQADGQKLRIELF 348

GO:0016021 "integral to membrane" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

MGI|MGI:1344426 Esyt1 "extended synaptotagmin-like protein 1" [Mus musculus (taxid:10090)]

 Score = 362 (132.5 bits), Expect = 5.8e-32, P = 5.8e-32
 Identities = 98/341 (28%), Positives = 179/341 (52%)

Query:     5 SGVFMGMI-FGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDN--FPVW 61
             +G+ +G + FG+AL  GWR   R R  K  +  A  ++L    R   + +   +   P W
Sbjct:    64 AGLSVGFVLFGLALYLGWR---RVRDGKERSLRAARQLLDDEERITAETLYMSHRELPAW 120

Query:    62 ISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGNV 121
             +SFP  E+ +WLNK ++++WPF+    E ++ E+V P +    P  + +  F+++ LG  
Sbjct:   121 VSFPDVEKAEWLNKIVAQVWPFLGQYMEKLLAETVAPAVRGANPH-LQTFTFTRVELGEK 179

Query:   122 APKIEGIRVQ-SLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVI 180
               +I G++V  S ++ QI +D++  + GD  I + V+     +    +K +Q+  V+RVI
Sbjct:   180 PLRIIGVKVHPSQRKDQILLDLNVSYVGDVQIDVEVKKYFCKA---GVKGMQLHGVLRVI 236

Query:   181 FQ-LAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQ 239
              + L  ++P + AV +  +  P   I++T      +L  IPG++ + D  +   I   L 
Sbjct:   237 LEPLTGDLPIVGAVSMFFIKRPTLDINWTGMT---NLLDIPGLSSLSDTMIMDSIAAFLV 293

Query:   240 WPHRIVVPIGGIPVDTSELELK-PQGKVAVTIVKANNLKNME-----MI-GKSDPYAVVH 292
              P+R++VP+     D ++L    P+G + + ++ A  L + +     +I GKSDPYA+V 
Sbjct:   294 LPNRLLVPLVPDLQDVAQLRSPLPRGIIRIHLLAARGLSSKDKYVKGLIEGKSDPYALVR 353

Query:   293 IKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVY 333
             +       + V+D  LNP W +T+E+I  +   Q +  EV+
Sbjct:   354 VGTQ-TFCSRVIDEELNPHWGETYEVIVHEVPGQEIEVEVF 393

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|3053 Esyt1 "extended synaptotagmin-like protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 358 (131.1 bits), Expect = 1.5e-31, P = 1.5e-31
 Identities = 98/341 (28%), Positives = 178/341 (52%)

Query:     5 SGVFMGMI-FGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDN--FPVW 61
             +G+ +G + FG+AL  GWR   R R  K  +  A  ++L    R   + +   +   P W
Sbjct:    66 AGLSVGFVLFGLALYLGWR---RVRDGKERSLRAARQLLDDEERITAETLYMSHRELPAW 122

Query:    62 ISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGNV 121
             +SFP  E+ +WLNK + ++WPF+    E ++ E+V P +    P  + +  F+++ LG  
Sbjct:   123 VSFPDVEKAEWLNKIVVQVWPFLGQYMEKLLAETVAPAVRGANPH-LQTFTFTRVELGEK 181

Query:   122 APKIEGIRVQ-SLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVI 180
               +I G++V  S ++ QI +D++  + GD  I + V+     +    +K +Q+  V+RVI
Sbjct:   182 PVRIIGVKVHPSQRKDQILLDLNVSYVGDLQIDVEVKKYFCKA---GVKGMQLHGVLRVI 238

Query:   181 FQ-LAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQ 239
              + L  ++P + AV +  +  P   I++T      +L  IPG++ + D  +   I   L 
Sbjct:   239 LEPLIGDLPIVGAVSMFFIKRPTLDINWTGMT---NLLDIPGLSSLSDTMIMDSIAAFLV 295

Query:   240 WPHRIVVPIGGIPVDTSELELK-PQGKVAVTIVKANNLKNME-----MI-GKSDPYAVVH 292
              P+R++VP+     D ++L    P+G + + ++ A  L + +     +I GKSDPYA+V 
Sbjct:   296 LPNRLLVPLVPDLQDVAQLRSPLPRGIIRIHLLAARGLSSKDKYVKGLIEGKSDPYALVR 355

Query:   293 IKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVY 333
             +       + V+D  LNP W +T+E+I  +   Q +  EV+
Sbjct:   356 VGTQ-TFCSRVIDEELNPHWGETYEVIVHEVPGQEIEVEVF 395

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9BSJ8 ESYT1 "Extended synaptotagmin-1" [Homo sapiens (taxid:9606)]

 Score = 351 (128.6 bits), Expect = 8.9e-31, P = 8.9e-31
 Identities = 96/340 (28%), Positives = 177/340 (52%)

Query:     6 GVFMGMI-FGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDN--FPVWI 62
             G+ +G + FG+AL  GWR   R R  K  +  A  ++L    +   K +   +   P W+
Sbjct:    75 GLSVGFVLFGLALYLGWR---RVRDEKERSLRAARQLLDDEEQLTAKTLYMSHRELPAWV 131

Query:    63 SFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGNVA 122
             SFP  E+ +WLNK ++++WPF+    E ++ E+V P +    P  + +  F+++ LG   
Sbjct:   132 SFPDVEKAEWLNKIVAQVWPFLGQYMEKLLAETVAPAVRGSNPH-LQTFTFTRVELGEKP 190

Query:   123 PKIEGIRVQ-SLKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVIF 181
              +I G++V    ++ QI +D++  + GD  I + V+     +    +K +Q+  V+RVI 
Sbjct:   191 LRIIGVKVHPGQRKEQILLDLNISYVGDVQIDVEVKKYFCKA---GVKGMQLHGVLRVIL 247

Query:   182 Q-LAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQW 240
             + L  ++P + AV +  +  P   I++T      +L  IPG++ + D  +   I   L  
Sbjct:   248 EPLIGDLPFVGAVSMFFIRRPTLDINWTGMT---NLLDIPGLSSLSDTMIMDSIAAFLVL 304

Query:   241 PHRIVVPIGGIPVDTSELELK-PQGKVAVTIVKANNLKNME-----MI-GKSDPYAVVHI 293
             P+R++VP+     D ++L    P+G + + ++ A  L + +     +I GKSDPYA+V +
Sbjct:   305 PNRLLVPLVPDLQDVAQLRSPLPRGIIRIHLLAARGLSSKDKYVKGLIEGKSDPYALVRL 364

Query:   294 KPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVY 333
                    + V+D  LNP W +T+E++  +   Q +  EV+
Sbjct:   365 GTQ-TFCSRVIDEELNPQWGETYEVMVHEVPGQEIEVEVF 403

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|A0FGR9 ESYT3 "Extended synaptotagmin-3" [Homo sapiens (taxid:9606)]

 Score = 348 (127.6 bits), Expect = 1.2e-30, P = 1.2e-30
 Identities = 97/331 (29%), Positives = 166/331 (50%)

Query:    11 MIFGIALMAGWRHMMRYRSTKRIAKAADIKILGSLNRDDLKKICGDNFPVWISFPVYEQV 70
             ++ G  L   WR   R R  K    AA  + L +      +++ G + P WI FP  E+V
Sbjct:    62 LLLGALLWMWWR---RNRRGKLGRLAAAFEFLDNEREFISRELRGQHLPAWIHFPDVERV 118

Query:    71 KWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRV 130
             +W NK +S+ WP+++   E   +E +EP + E +   + +  F+KL  G   P++ G++ 
Sbjct:   119 EWANKIISQTWPYLSMIMESKFREKLEPKIRE-KSIHLRTFTFTKLYFGQKCPRVNGVKA 177

Query:   131 QS--LKQGQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFTVIRVIFQ-LAEEI 187
              +    + ++T+D+   + GD  I   VE   +  I   +  +Q+   +RVI + L  + 
Sbjct:   178 HTNTCNRRRVTVDLQICYIGDCEI--SVE---LQKIQAGVNGIQLQGTLRVILEPLLVDK 232

Query:   188 PCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQWPHRIVVP 247
             P + AV V  L +P  +I++T   +   L A PGI D+ D  ++ +I   L  P+R+ VP
Sbjct:   233 PFVGAVTVFFLQKPHLQINWT--GLTNLLDA-PGINDVSDSLLEDLIATHLVLPNRVTVP 289

Query:   248 IG-GIPVDTSELELKPQGKVAVTIVKANNLKNME----MIGKSDPYAVVHIKPLFKVKTN 302
             +  G+ +      L P G + V +++A  L   +    + GKSDPYA V I  L   ++ 
Sbjct:   290 VKKGLDLTNLRFPL-PCGVIRVHLLEAEQLAQKDNFLGLRGKSDPYAKVSIG-LQHFRSR 347

Query:   303 VVDNNLNPVWNQTFELIAEDKETQSLIFEVY 333
              +  NLNP WN+ FE +  +   Q L  ++Y
Sbjct:   348 TIYRNLNPTWNEVFEFMVYEVPGQDLEVDLY 378

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00026294001 SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (513 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	379
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	6e-31
cd00030	102	cd00030, C2, C2 domain	1e-21
pfam00168	85	pfam00168, C2, C2 domain	5e-20
smart00239	101	smart00239, C2, Protein kinase C conserved region	2e-18
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	9e-15
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	1e-12
cd04045	120	cd04045, C2C_Tricalbin-like, C2 domain third repea	7e-12
cd04051	125	cd04051, C2_SRC2_like, C2 domain present in Soybea	2e-11
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	3e-11
cd04044	124	cd04044, C2A_Tricalbin-like, C2 domain first repea	9e-11
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	2e-10
cd08403	134	cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s	2e-10
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	3e-10
cd08385	124	cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain	3e-10
cd08402	136	cd08402, C2B_Synaptotagmin-1, C2 domain second rep	4e-10
cd04048	120	cd04048, C2A_Copine, C2 domain first repeat in Cop	6e-10
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	2e-09
cd04036	119	cd04036, C2_cPLA2, C2 domain present in cytosolic	3e-09
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	1e-08
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	3e-08
cd04035	123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	5e-08
cd04043	126	cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma	5e-08
cd04030	127	cd04030, C2C_KIAA1228, C2 domain third repeat pres	7e-08
cd04031	125	cd04031, C2A_RIM1alpha, C2 domain first repeat con	1e-07
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	2e-07
cd08377	119	cd08377, C2C_MCTP_PRT, C2 domain third repeat foun	2e-07
cd04047	110	cd04047, C2B_Copine, C2 domain second repeat in Co	4e-07
cd08386	125	cd08386, C2A_Synaptotagmin-7, C2A domain first rep	6e-07
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	6e-07
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	2e-06
cd08373	127	cd08373, C2A_Ferlin, C2 domain first repeat in Fer	2e-06
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	3e-06
cd08375	136	cd08375, C2_Intersectin, C2 domain present in Inte	4e-06
cd04041	111	cd04041, C2A_fungal, C2 domain first repeat; funga	4e-06
cd08382	123	cd08382, C2_Smurf-like, C2 domain present in Smad	5e-06
cd08384	133	cd08384, C2B_Rabphilin_Doc2, C2 domain second repe	6e-06
cd08678	126	cd08678, C2_C21orf25-like, C2 domain found in the	7e-06
cd04032	127	cd04032, C2_Perforin, C2 domain of Perforin	8e-06
cd08410	135	cd08410, C2B_Synaptotagmin-17, C2 domain second re	8e-06
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	8e-06
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	1e-05
cd08388	128	cd08388, C2A_Synaptotagmin-4-11, C2A domain first	1e-05
cd00275	128	cd00275, C2_PLC_like, C2 domain present in Phospho	2e-05
cd08378	121	cd08378, C2B_MCTP_PRT_plant, C2 domain second repe	8e-05
cd08404	136	cd08404, C2B_Synaptotagmin-4, C2 domain second rep	1e-04
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	2e-04
cd08676	153	cd08676, C2A_Munc13-like, C2 domain first repeat i	2e-04
cd04015	158	cd04015, C2_plant_PLD, C2 domain present in plant	3e-04
cd04033	133	cd04033, C2_NEDD4_NEDD4L, C2 domain present in the	6e-04
cd04021	125	cd04021, C2_E3_ubiquitin_ligase, C2 domain present	8e-04
cd04052	111	cd04052, C2B_Tricalbin-like, C2 domain second repe	8e-04
cd04046	126	cd04046, C2_Calpain, C2 domain present in Calpain	0.001
cd04050	105	cd04050, C2B_Synaptotagmin-like, C2 domain second	0.002

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score =  124 bits (313), Expect = 6e-31
 Identities = 90/295 (30%), Positives = 131/295 (44%), Gaps = 32/295 (10%)

Query: 67  YEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIE 126
           YE V+WLN  L K WP +  +    + + V   L E  P  I +L   + +LG+  P+I+
Sbjct: 220 YESVEWLNTFLQKFWPIIEPSISQQVVDQVNQQLAEAIPSFIDALALDEFTLGSKPPRID 279

Query: 127 GIRV-QSLKQGQITMDIDF---------------RWGGDPSIILGVEAAM---VASIPIQ 167
           GIR   S +   + MD+DF               R   +P I L V+        ++PI 
Sbjct: 280 GIRSYPSTESDTVVMDVDFSFTPHDISDVTATSARASVNPKISLVVKKGKSFGSFTLPIL 339

Query: 168 LKDLQVFTVIRVIFQLAEEIPCISAVVVALLSEPKPRIDYTLKAVGGS-----LTAIPGI 222
           ++DL     +RV  +L  + P I  V   LL    P  D+ L  +GG      + AIPG+
Sbjct: 340 VEDLFFKGRVRVRVELMSKYPFIKTVSFQLLE--VPEFDFILVPLGGDFFGVDIFAIPGL 397

Query: 223 ADMIDDTVDSIITDMLQWPHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMI 282
           +  I + ++S +  ML  P+ + + I  I    S   +   G V V I  A  LK  +  
Sbjct: 398 SRFIQEIINSTLGPMLLPPNSLTIDISQIMAGDSGTAI---GVVEVKIKSAEGLKKSDST 454

Query: 283 --GKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIF 335
             G  DPY  V        KT V  N LNPVWN+TF ++     T  L   +Y F
Sbjct: 455 INGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLN-SFTDPLNLSLYDF 508

Length = 1227

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 87.9 bits (218), Expect = 1e-21
 Identities = 32/66 (48%), Positives = 42/66 (63%)

Query: 268 VTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQS 327
           VT+++A NL   ++ GKSDPY  V +    K KT VV N LNPVWN+TFE    D E+ +
Sbjct: 3   VTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDT 62

Query: 328 LIFEVY 333
           L  EV+
Sbjct: 63  LTVEVW 68

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 83.5 bits (207), Expect = 5e-20
 Identities = 30/68 (44%), Positives = 37/68 (54%), Gaps = 2/68 (2%)

Query: 268 VTIVKANNLKNMEMIGKSDPYAVVHI--KPLFKVKTNVVDNNLNPVWNQTFELIAEDKET 325
           VT++ A NL   ++ GKSDPY  V +  +     KT VV N LNPVWN+TF       E 
Sbjct: 3   VTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLPEL 62

Query: 326 QSLIFEVY 333
             L  EVY
Sbjct: 63  AELRIEVY 70

Length = 85

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 79.8 bits (197), Expect = 2e-18
 Identities = 33/71 (46%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHI--KPLFKVKTNVVDNNLNPVWNQTFELIAED 322
            + V I+ A NL   +  GKSDPY  V +   P  K KT VV N LNPVWN+TFE     
Sbjct: 1   TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60

Query: 323 KETQSLIFEVY 333
            E   L  EVY
Sbjct: 61  PELAELEIEVY 71

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 69.6 bits (171), Expect = 9e-15
 Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 7/76 (9%)

Query: 264 GKVAVTIVKANNL--KNMEMI----GKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFE 317
           G + + +++A +L  K+  +     GKSDPY +V +      K+ V+  NLNP WN+ +E
Sbjct: 1   GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA-QTFKSKVIKENLNPKWNEVYE 59

Query: 318 LIAEDKETQSLIFEVY 333
            + ++   Q L  E++
Sbjct: 60  AVVDEVPGQELEIELF 75

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 64.1 bits (157), Expect = 1e-12
 Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 6/76 (7%)

Query: 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHI----KPLFKVKTNVVDNNLNPVWNQT--FE 317
            ++ V ++KA NL   +  G SDPY  V +    K L K KT+V    LNPV+N+   F+
Sbjct: 14  ERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFD 73

Query: 318 LIAEDKETQSLIFEVY 333
           + AE  E  SL+  V 
Sbjct: 74  VPAEQLEEVSLVITVV 89

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins

 Score = 61.8 bits (151), Expect = 7e-12
 Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 3/65 (4%)

Query: 270 IVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFEL-IAEDKETQSL 328
           I KAN+LKN+E +GK DPY  V +  + K +T  + N LNPVW++   + +      Q +
Sbjct: 7   IRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPN--QKI 64

Query: 329 IFEVY 333
             EV 
Sbjct: 65  TLEVM 69

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120

>gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

 Score = 60.7 bits (148), Expect = 2e-11
 Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 5/71 (7%)

Query: 268 VTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVV-DNNLNPVWNQTFELIAEDKETQ 326
           +TI+ A +LKN+ + GK   YAVV I P  K  T V  D   NP WN+T     +++  Q
Sbjct: 4   ITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQ 63

Query: 327 S----LIFEVY 333
                L  EVY
Sbjct: 64  QGRLALTIEVY 74

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 59.5 bits (145), Expect = 3e-11
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 4/68 (5%)

Query: 268 VTIVKANNLKNMEMIGKSDPYAVVHI--KPLFKVKTNVVDNNLNPVWNQTFELIAEDKET 325
           V ++ A NL + +  GKSDP+   ++  + +FK  T  +   LNPVWN++FE+    +  
Sbjct: 3   VDVISAENLPSADRNGKSDPFVKFYLNGEKVFK--TKTIKKTLNPVWNESFEVPVPSRVR 60

Query: 326 QSLIFEVY 333
             L  EVY
Sbjct: 61  AVLKVEVY 68

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins

 Score = 58.7 bits (143), Expect = 9e-11
 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 3/72 (4%)

Query: 264 GKVAVTIVKANNLKNMEMIGKS-DPYAVVHI-KPLFKVKTNVVDNNLNPVWNQTFELIAE 321
           G +AVTI  A  LK  ++IG + DPY    I       +T V  +  NPVWN+T  ++  
Sbjct: 2   GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILV- 60

Query: 322 DKETQSLIFEVY 333
           +  T+ L   VY
Sbjct: 61  NSLTEPLNLTVY 72

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 58.2 bits (141), Expect = 2e-10
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 3/74 (4%)

Query: 268 VTIVKANNL--KNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKET 325
           V +V+A +L  K+    GKSDPYA++ +    + KT  + N LNP WN   E      + 
Sbjct: 5   VHVVEAKDLAAKDRSGKGKSDPYAILSVGA-QRFKTQTIPNTLNPKWNYWCEFPIFSAQN 63

Query: 326 QSLIFEVYIFLLFF 339
           Q L   ++    F 
Sbjct: 64  QLLKLILWDKDRFA 77

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

 Score = 58.3 bits (141), Expect = 2e-10
 Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 6/75 (8%)

Query: 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHI----KPLFKVKTNVVDNNLNPVWNQT--FE 317
           G++ +TI+KA NLK M++ G SDPY  V +    + L K KT+V  N LNP +N+   F+
Sbjct: 14  GRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFD 73

Query: 318 LIAEDKETQSLIFEV 332
           +  E+ +  SLI  V
Sbjct: 74  VPPENVDNVSLIIAV 88

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score = 57.8 bits (140), Expect = 3e-10
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 4/58 (6%)

Query: 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHI----KPLFKVKTNVVDNNLNPVWNQTFE 317
            ++ V I+KA NLK M++ G SDPY  V +    K + K KT +    LNPV+N++F 
Sbjct: 15  NRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFI 72

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

 Score = 56.9 bits (138), Expect = 3e-10
 Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 4/77 (5%)

Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVK--TNVVDNNLNPVWNQTFELIA 320
             ++ V I++A +L  M+M G SDPY  V++ P  K K  T V    LNPV+N+TF    
Sbjct: 15  SNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKV 74

Query: 321 EDKETQS--LIFEVYIF 335
              E  +  L+F VY F
Sbjct: 75  PYSELGNKTLVFSVYDF 91

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1

 Score = 57.0 bits (138), Expect = 4e-10
 Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 6/75 (8%)

Query: 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHI----KPLFKVKTNVVDNNLNPVWNQ--TFE 317
           GK+ V I++A NLK M++ G SDPY  +H+    K L K KT +    LNP +N+  +FE
Sbjct: 15  GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFE 74

Query: 318 LIAEDKETQSLIFEV 332
           +  E  +   LI  V
Sbjct: 75  VPFEQIQKVHLIVTV 89

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176013 cd04048, C2A_Copine, C2 domain first repeat in Copine

 Score = 56.0 bits (136), Expect = 6e-10
 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 10/72 (13%)

Query: 270 IVKANNLKNMEMIGKSDPYAVVHIKPLFKVK------TNVVDNNLNPVWNQTFEL--IAE 321
            +   NL + +++ KSDP+ VV++K     +      T V+ NNLNP +  TF +    E
Sbjct: 6   SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFE 65

Query: 322 DKETQSLIFEVY 333
             E Q L FEVY
Sbjct: 66  --EVQKLRFEVY 75

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 120

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 3/70 (4%)

Query: 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDK 323
           G + V +V+  NL   +    SDPY V+ +    KVKT V+  NLNPVWN+   L   + 
Sbjct: 2   GLLKVRVVRGTNLAVRDFTS-SDPYVVLTLGNQ-KVKTRVIKKNLNPVWNEELTLSVPNP 59

Query: 324 ETQSLIFEVY 333
               L  EV+
Sbjct: 60  MAP-LKLEVF 68

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

 Score = 54.2 bits (131), Expect = 3e-09
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 268 VTIVKANNLKNMEMIGKSDPYAVVHIK--PLFKVKTNVVDNNLNPVWNQTFELI 319
           V +++A N+   +++   D Y  + +      K +T  + N++NPVWN+TFE  
Sbjct: 4   VRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFR 57

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 53.0 bits (128), Expect = 1e-08
 Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 7/77 (9%)

Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHI----KPLFKVKTNVVDNNLNPVWNQTF-- 316
             K+ V + +A NL  M+  G SDPY  + +    K   K KT  +   LNPVWN+TF  
Sbjct: 12  DNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTF 71

Query: 317 ELIAEDKETQSLIFEVY 333
           +L   DK+   L  EV+
Sbjct: 72  DLKPADKDR-RLSIEVW 87

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 51.5 bits (124), Expect = 3e-08
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 10/76 (13%)

Query: 268 VTIVKANNLKNMEMIGKSDPYAVVHIKP--LF----KVKTNVVDNNLNPVWNQTFE--LI 319
           V I+ A NL  ++  G SDP+  V + P  LF      KT V    L P+++++FE  + 
Sbjct: 20  VEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVP 79

Query: 320 AEDKETQS--LIFEVY 333
            E    +   L+F V 
Sbjct: 80  PEQCSVEGALLLFTVK 95

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain

 Score = 50.7 bits (122), Expect = 5e-08
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 4/53 (7%)

Query: 268 VTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTF 316
            TI++A  LK M+  G SDPY  +++ P      K++T  V    NP +N+T 
Sbjct: 19  CTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETL 71

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

 Score = 50.7 bits (122), Expect = 5e-08
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 268 VTIVKANNLKNMEMIGKSDPYAVVHIKPLFKV--KTNVVDNNLNPVWNQTFELIAEDKET 325
           + IV+A NLK     G SDPY  +      +   KT  + + LNP W++ FEL     E 
Sbjct: 5   IRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEP 64

Query: 326 QSLIFEVY 333
             +   V+
Sbjct: 65  LWISATVW 72

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126

>gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

 Score = 50.3 bits (121), Expect = 7e-08
 Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 4/75 (5%)

Query: 262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKV----KTNVVDNNLNPVWNQTFE 317
            + K+ VT+ K  NL   +     DPY  +++ P        KT+V  +NLNPV+++TFE
Sbjct: 14  QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFE 73

Query: 318 LIAEDKETQSLIFEV 332
                +E +    +V
Sbjct: 74  FPVSLEELKRRTLDV 88

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127

>gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 268 VTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFE 317
           VT+++A +L   +     +PY  V++ P      K +T  V   LNP WNQTFE
Sbjct: 20  VTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFE 73

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 24/53 (45%), Positives = 34/53 (64%)

Query: 262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQ 314
           P G + V++ KAN+L+N    GKSDPYA V +  L K +T    + LNP+WN+
Sbjct: 709 PIGAIRVSVRKANDLRNEIPGGKSDPYATVLVNNLVKYRTIYGSSTLNPIWNE 761

Length = 1227

>gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 4/72 (5%)

Query: 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDK 323
           G + V +++A+ L   ++ GKSDP+ V+ +    +++T+ +   LNP WN+ F    +D 
Sbjct: 1   GFLQVKVIRASGLAAADIGGKSDPFCVLELVNA-RLQTHTIYKTLNPEWNKIFTFPIKDI 59

Query: 324 ETQSLIFEVYIF 335
                + EV ++
Sbjct: 60  HD---VLEVTVY 68

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119

>gnl|CDD|176012 cd04047, C2B_Copine, C2 domain second repeat in Copine

 Score = 47.9 bits (115), Expect = 4e-07
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 14/74 (18%)

Query: 271 VKANNLKNMEMIGKSDPYAVVHIK-------PLFKVKTNVVDNNLNPVWNQTFELIAED- 322
                L   +  GKSDP+  +  +        ++  +T V+ N LNPVW   F +  +  
Sbjct: 7   FSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVY--RTEVIKNTLNPVWK-PFTIPLQKL 63

Query: 323 ---KETQSLIFEVY 333
                 + +  EVY
Sbjct: 64  CNGDYDRPIKIEVY 77

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 110

>gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7

 Score = 47.7 bits (114), Expect = 6e-07
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 268 VTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVK--TNVVDNNLNPVWNQTF 316
           + I+KA  L   +  G SDP+  +++ P  K K  T V   NLNP WN+TF
Sbjct: 20  LKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETF 70

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 47.6 bits (113), Expect = 6e-07
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTF 316
           K+++T+V A  L   +  G SDPY  V +    K +T  +  NLNPVWN+ F
Sbjct: 2   KISITVVCAQGLIAKDKTGTSDPYVTVQVGKT-KKRTKTIPQNLNPVWNEKF 52

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 1/87 (1%)

Query: 250  GIPVDTSELEL-KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNL 308
             +PV    +E+ +  G + + +    NL + +  G SDP+  + +      KT VV   L
Sbjct: 1025 PVPVKLPPVEMVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTL 1084

Query: 309  NPVWNQTFELIAEDKETQSLIFEVYIF 335
            NPVWN+ F +   ++    L   V  +
Sbjct: 1085 NPVWNEEFTIEVLNRVKDVLTINVNDW 1111

Length = 1227

>gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 9/69 (13%)

Query: 269 TIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFEL----IAEDKE 324
            +V   NL  +   GK D  A V  +   K KT V++N LNPVWN+TFE       +  E
Sbjct: 1   LVVSLKNLPGL--KGKGDRIAKVTFRG-VKKKTRVLENELNPVWNETFEWPLAGSPDPDE 57

Query: 325 TQSLIFEVY 333
             SL   V 
Sbjct: 58  --SLEIVVK 64

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 5/53 (9%)

Query: 283 GKSDPYAVVHI--KPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVY 333
           G SDPY       K ++K KT  +  NLNPVW++ F L  ED  TQ L  +V+
Sbjct: 19  GTSDPYVKFKYGGKTVYKSKT--IYKNLNPVWDEKFTLPIEDV-TQPLYIKVF 68

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDK 323
           G++ V IV+  +LK     GKSDPY  V +      KT VV + LNP WN + +   +D 
Sbjct: 15  GRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEH-KTKVVSDTLNPKWNSSMQFFVKDL 73

Query: 324 ETQSLIFEVY 333
           E   L   V+
Sbjct: 74  EQDVLCITVF 83

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136

>gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group

 Score = 44.9 bits (107), Expect = 4e-06
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 7/57 (12%)

Query: 264 GKVAVTIVKANNLKNMEM-IGKSDPYAVVHI----KPLFKVKTNVVDNNLNPVWNQT 315
           G + VTI +A +L   +   G SDPY         KPL+   T ++  +LNPVW +T
Sbjct: 1   GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYS--TRIIRKDLNPVWEET 55

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111

>gnl|CDD|176028 cd08382, C2_Smurf-like, C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

 Score = 45.0 bits (107), Expect = 5e-06
 Identities = 17/55 (30%), Positives = 30/55 (54%)

Query: 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELI 319
           KV +T++ A+ L   ++    DP+AV+ +       T+V    L+P WN+ F+L 
Sbjct: 1   KVRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLT 55

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have type-II topology. Length = 123

>gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain

 Score = 45.0 bits (107), Expect = 6e-06
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTF-- 316
           +  + V I++  NL  M+  G SDP+  +++KP      K KT V    LNP +N+ F  
Sbjct: 12  RRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFY 71

Query: 317 ELIAEDKETQSLIFEVY 333
           ++   D   ++L   V+
Sbjct: 72  DIKHSDLAKKTLEITVW 88

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133

>gnl|CDD|176060 cd08678, C2_C21orf25-like, C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

 Score = 44.7 bits (106), Expect = 7e-06
 Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 8/69 (11%)

Query: 268 VTIVKANNLKNMEMIGKSDPYAVVHI-KPLFKVKTNVVDNNLNPVWNQT--FELIAEDKE 324
           V  +KAN L   E  G S+PY V+ + +P  K +++   N  NP W++   FEL    KE
Sbjct: 3   VKNIKANGLS--EAAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKE 60

Query: 325 TQSLIFEVY 333
              L+FEVY
Sbjct: 61  ---LLFEVY 66

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin

 Score = 44.6 bits (106), Expect = 8e-06
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 13/76 (17%)

Query: 264 GKVAVTIVKANNLKNMEMIG----KSDPYAVVHIKPLFKVK-TNVVDNNLNPVWNQTFEL 318
             + VT+++A  L      G     +D Y  V +    + K T V+ NN NP WN TF+ 
Sbjct: 28  ATLTVTVLRATGLW-----GDYFTSTDGY--VKVFFGGQEKRTEVIWNNNNPRWNATFDF 80

Query: 319 IAED-KETQSLIFEVY 333
            + +      L FEV+
Sbjct: 81  GSVELSPGGKLRFEVW 96

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127

>gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17

 Score = 44.5 bits (105), Expect = 8e-06
 Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 6/80 (7%)

Query: 260 LKPQGKVAVTIVKANNLKNMEMIGKSDPYA---VVHIKPLFKV-KTNVVDNNLNPVWNQT 315
           L   G++ V I++A  L   +M   SDP+    +VH   L K  KT+ +   ++P +N++
Sbjct: 10  LPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNES 69

Query: 316 --FELIAEDKETQSLIFEVY 333
             F++  E+ E  SL+F VY
Sbjct: 70  FSFKVPQEELENVSLVFTVY 89

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 44.5 bits (106), Expect = 8e-06
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 266 VAVTIVKANNLKNMEMIGKSDPYAVVHI-KPLFKVKTNVVDNNLNPVWNQTFELIAE 321
           V V +V+A NL+  +  GKSDPY  + + K     + N + N LNPV+ + FEL A 
Sbjct: 2   VRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEAT 58

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 8/75 (10%)

Query: 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLF---KVKTNVVDNNLNPVWNQTFEL-IA 320
           K+ V +V A +L   +  G S  Y  +     F   K +T     +LNPVWN+     ++
Sbjct: 1   KLVVEVVDAQDLMPKDGQGSSSAYVELD----FDGQKKRTRTKPKDLNPVWNEKLVFNVS 56

Query: 321 EDKETQSLIFEVYIF 335
           +     +L+ EVY++
Sbjct: 57  DPSRLSNLVLEVYVY 71

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 6/74 (8%)

Query: 268 VTIVKANNLKNM-EMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFE---LIAE 321
           V I++  +L  M E  G SDPY  + + P    KVKT V+    NPV+++TF    +   
Sbjct: 20  VNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYN 79

Query: 322 DKETQSLIFEVYIF 335
             +  SL F V  F
Sbjct: 80  QLQDLSLHFAVLSF 93

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 29/77 (37%), Positives = 34/77 (44%), Gaps = 8/77 (10%)

Query: 265 KVAVTIVKANNLKNMEMIGKS--DPYAVVHIKPL-----FKVKTNVVDNN-LNPVWNQTF 316
            + + I+    L   +    S  DPY  V I  L      K KT VV NN  NPVWN+TF
Sbjct: 3   TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETF 62

Query: 317 ELIAEDKETQSLIFEVY 333
           E      E   L F VY
Sbjct: 63  EFDVTVPELAFLRFVVY 79

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128

>gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 41.5 bits (98), Expect = 8e-05
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 9/66 (13%)

Query: 268 VTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKET-Q 326
           V +VKA  L        +DP   V +   +K  T  ++   NP WNQ F   A  K+  Q
Sbjct: 4   VRVVKARGLPANS----NDPVVEVKLGN-YKGSTKAIERTSNPEWNQVF---AFSKDRLQ 55

Query: 327 SLIFEV 332
               EV
Sbjct: 56  GSTLEV 61

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121

>gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 26/75 (34%), Positives = 46/75 (61%), Gaps = 6/75 (8%)

Query: 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHI----KPLFKVKTNVVDNNLNPVWNQTF--E 317
            ++ V ++KA +L  M++ G +DPY  V++    K + K KT+V    LNPV+N++F  +
Sbjct: 15  NRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFD 74

Query: 318 LIAEDKETQSLIFEV 332
           + +E+ E  S+ F V
Sbjct: 75  IPSEELEDISVEFLV 89

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 11/73 (15%)

Query: 266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKV-----KTNVVDNNLNPVWNQTFELIA 320
           V + +V+  NL  M+  G SDPY    +K  F++     K+ V    LNP W + F+L  
Sbjct: 2   VTIVLVEGKNLPPMDDNGLSDPY----VK--FRLGNEKYKSKVCSKTLNPQWLEQFDLHL 55

Query: 321 EDKETQSLIFEVY 333
            D ++Q L  EV+
Sbjct: 56  FDDQSQILEIEVW 68

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 28/89 (31%)

Query: 268 VTIVKANNLKNMEMIGKSDPYAVVHI------------KPLFKVK--------------- 300
           VT+++A  L   ++ G SDPY ++ I            K     +               
Sbjct: 32  VTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIK 91

Query: 301 -TNVVDNNLNPVWNQTFELIAEDKETQSL 328
            T V    LNPVWN+TF    ED     L
Sbjct: 92  VTEVKPQTLNPVWNETFRFEVEDVSNDQL 120

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153

>gnl|CDD|175982 cd04015, C2_plant_PLD, C2 domain present in plant phospholipase D (PLD)

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 30/79 (37%)

Query: 268 VTIVKANNLKNMEM------------------------------IGKSDPYAVVHIKPLF 297
           VTI +A+NL NM+M                                 SDPYA V +    
Sbjct: 11  VTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGAR 70

Query: 298 KVKTNVVDNNLNPVWNQTF 316
             +T V++N+ NPVWN++F
Sbjct: 71  VARTRVIENSENPVWNESF 89

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 158

>gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 7/72 (9%)

Query: 268 VTIVKANNLKNMEMIGKSDPYAVVHI-KP-----LFKVKTNVVDNNLNPVWNQTFELIAE 321
           V ++   +L   ++ G SDPY  + +  P     +  V+T  +   LNP WN+ F     
Sbjct: 4   VKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEF-FFRV 62

Query: 322 DKETQSLIFEVY 333
           +     L+FEV+
Sbjct: 63  NPREHRLLFEVF 74

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133

>gnl|CDD|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase

 Score = 38.8 bits (91), Expect = 8e-04
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKE 324
           ++ +T+  A  LK+     K DPY  V +      KT V     NP WN+ F ++     
Sbjct: 3   QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLV--TP 59

Query: 325 TQSLIFEVY 333
             +L F+V+
Sbjct: 60  QSTLEFKVW 68

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins

 Score = 38.4 bits (90), Expect = 8e-04
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 280 EMIGKSDPYAVVHI--KPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVY 333
              G   PYA +++  K ++   T V     NP WN + E +  D+    +   V 
Sbjct: 8   SKTGLLSPYAELYLNGKLVYT--TRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVK 61

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIK-PLFKVKTNVVDNNLNPVWN 313
           PQ    V +  A  L   +  G +DPY +  IK     V++ V  + L+P ++
Sbjct: 1   PQVVTQVHVHSAEGLSKQDSGGGADPYVI--IKCEGESVRSPVQKDTLSPEFD 51

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins

 Score = 37.5 bits (88), Expect = 0.002
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 273 ANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEV 332
           A NL   +   +  PY  + +    + K+ V +   NPVW + F  +  + E Q L  EV
Sbjct: 9   AKNLPLAKSTKEPSPYVELTVGKTTQ-KSKVKERTNNPVWEEGFTFLVRNPENQELEIEV 67

Query: 333 Y 333
            
Sbjct: 68  K 68

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	379
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	100.0
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.81
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.73
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.73
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.72
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	99.71
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.7
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.69
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.69
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.68
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.68
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.67
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.67
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.67
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.66
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.66
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.65
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.65
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.64
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.64
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.64
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.64
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.63
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.63
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.62
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.62
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.61
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.61
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.61
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.6
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.6
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.6
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.59
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.59
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.59
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.58
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.58
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.58
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.58
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.57
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.57
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.57
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.56
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.55
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.55
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.55
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.55
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.54
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.54
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.53
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.53
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.53
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.53
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.52
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.52
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.52
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.51
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.5
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.49
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.49
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.48
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.48
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.48
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.48
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.48
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.48
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.48
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.47
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.47
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.47
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.47
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.47
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.46
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.45
PLN03008	868	Phospholipase D delta	99.45
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.44
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.44
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.44
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.43
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.43
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.42
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.42
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.42
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.41
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.41
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.4
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.39
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.37
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.35
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.35
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.35
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.35
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.32
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.3
PF10296	91	DUF2404: Putative integral membrane protein conser	99.28
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.28
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.28
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	99.19
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.19
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.03
PLN02223	537	phosphoinositide phospholipase C	98.99
PLN02270	808	phospholipase D alpha	98.98
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	98.93
PLN02952	599	phosphoinositide phospholipase C	98.92
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	98.9
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	98.89
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	98.84
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.84
cd00030	102	C2 C2 domain. The C2 domain was first identified i	98.73
PLN02230	598	phosphoinositide phospholipase C 4	98.73
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.68
PLN02222	581	phosphoinositide phospholipase C 2	98.64
PLN02228	567	Phosphoinositide phospholipase C	98.59
KOG0169	746	consensus Phosphoinositide-specific phospholipase	98.56
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	98.54
KOG3532	1051	consensus Predicted protein kinase [General functi	98.35
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.34
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	98.33
PLN02352	758	phospholipase D epsilon	98.16
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	97.96
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	97.85
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	97.51
PLN02964	644	phosphatidylserine decarboxylase	97.41
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	97.39
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	97.25
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	96.99
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	96.33
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	96.22
KOG2060	405	consensus Rab3 effector RIM1 and related proteins,	96.08
KOG1327	529	consensus Copine [Signal transduction mechanisms]	95.45
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	94.81
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	91.93
KOG1452	442	consensus Predicted Rho GTPase-activating protein	91.9
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	90.86
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	90.74
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	89.83
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	88.67
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	87.67
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	87.65
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	87.39
KOG2238	795	consensus Uncharacterized conserved protein TEX2,	86.25
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	85.6
PF15627	156	CEP76-C2: CEP76 C2 domain	85.08
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	83.23
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	82.98
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	82.78

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=100.00  E-value=9.6e-47  Score=388.95  Aligned_cols=271  Identities=32%  Similarity=0.551  Sum_probs=243.6

Q ss_pred             CCCcchHHHHHHHHhHchhhHHHHHHHHHHhHHHHHHhcCCCCcceEEEeEEecCCCCCeeeeeEEEe-cCCCeEEEEEE
Q 016987           65 PVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRVQS-LKQGQITMDID  143 (379)
Q Consensus        65 ~d~E~~eWlN~~l~~~Wp~~~~~~~~~i~~~l~~~l~~~~p~~~~~i~~~~~~lG~~pP~i~~ir~~~-~~~~~~~ld~~  143 (379)
                      .|+|++||||.+|+++||.+++.+++.+.+.+|+.|.++-|+||+.+.+++||||++||||.+||.|+ +++|.+.||++
T Consensus       218 nd~ESveWLNtfL~KfW~i~eP~iSqqV~dqvn~~la~~iPsFI~~l~l~efTLGsk~PrI~~Irsyp~te~dtv~mD~~  297 (1227)
T COG5038         218 NDYESVEWLNTFLQKFWPIIEPSISQQVVDQVNQQLAEAIPSFIDALALDEFTLGSKPPRIDGIRSYPSTESDTVVMDVD  297 (1227)
T ss_pred             cchhHHHHHHHHHHhheeccChHHHHHHHHHHHHHHHhhcchhhhhhhhhhcccCCCCCceeeeeecCCCCCceEEEEee
Confidence            47899999999999999999999999999999999999999999999999999999999999999886 67899999999


Q ss_pred             EEEcC---------------CCcEEEEEEee--ee-eeEEEEEEEEEEEEEEEEEEEecCCCCccceEEEEecCCCcceE
Q 016987          144 FRWGG---------------DPSIILGVEAA--MV-ASIPIQLKDLQVFTVIRVIFQLAEEIPCISAVVVALLSEPKPRI  205 (379)
Q Consensus       144 ~~~~g---------------~~~i~l~~~~~--~~-~~~~v~v~~~~~~g~~Rv~l~l~~~~P~~~~v~~sf~~~P~p~i  205 (379)
                      +++..               ++.|.|.++.+  ++ .++||.|+++.|.|++|++++|++..|++..++++|++.  |++
T Consensus       298 ~sftP~d~sD~t~~~~r~~vn~kIsL~v~~Gk~~~~~~lPI~Vedl~f~g~~Rvr~~L~~~~PfiktV~~~Lle~--Pe~  375 (1227)
T COG5038         298 FSFTPHDISDVTATSARASVNPKISLVVKKGKSFGSFTLPILVEDLFFKGRVRVRVELMSKYPFIKTVSFQLLEV--PEF  375 (1227)
T ss_pred             eccCccchhhhhhHHHhhhcCcceeEEEEeeeeeeEEeccEEEEeeeeeEEEEEEEEecCCCcceeEEEEEEecC--cce
Confidence            99985               34577777665  34 889999999999999999999999999999999999997  899


Q ss_pred             EEEeeecCc-----CcccccchHHHHHHHHHHHHhhhcccCceEEeeeCCCCcccccccccCCcEEEEEEeecccccccc
Q 016987          206 DYTLKAVGG-----SLTAIPGIADMIDDTVDSIITDMLQWPHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNME  280 (379)
Q Consensus       206 df~l~~~g~-----~i~~iP~l~~~i~~~i~~~i~~~~v~P~~~~vpl~~~~~d~~~l~~~~~g~L~V~V~~A~~L~~~d  280 (379)
                      ||.++++|+     ||+++|||++||+++|...++.++++|+.+++++...-  ... ...+.|++.++|.+|++|...+
T Consensus       376 df~l~Plg~~~~g~dI~~iPGL~~fI~~~i~~~l~pml~~Pnsl~idi~~~m--~~~-s~~aIGVv~vkI~sa~~lk~~d  452 (1227)
T COG5038         376 DFILVPLGGDFFGVDIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIM--AGD-SGTAIGVVEVKIKSAEGLKKSD  452 (1227)
T ss_pred             eEEEEEcCCCccceeEecCccHHHHHHHHHHhhcCCeeeCCceEEEcHHHhh--ccc-cCCeeEEEEEEEeeccCccccc
Confidence            999999984     68899999999999999999999999999999996321  111 3468999999999999999888


Q ss_pred             --cCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC
Q 016987          281 --MIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA  341 (379)
Q Consensus       281 --~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d  341 (379)
                        ..+..|||+.+........||++.++++||+|||+|++.+... +++|.+++||.+.+++|
T Consensus       453 ~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~-~d~L~LslyD~n~~~sd  514 (1227)
T COG5038         453 STINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSF-TDPLNLSLYDFNSFKSD  514 (1227)
T ss_pred             ccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEeccc-CCceeEEEEeccccCCc
Confidence              5688999999997664567999999999999999999998765 78999999998887776

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.81  E-value=2.4e-19  Score=147.39  Aligned_cols=99  Identities=22%  Similarity=0.422  Sum_probs=86.9

Q ss_pred             CcEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCC-CCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC
Q 016987          263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDN-NLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA  341 (379)
Q Consensus       263 ~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~-tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d  341 (379)
                      .|+|+|+|++|++++..+ .|++||||++.+++ .+++|+++.+ +.||+|||+|.|.+.+. ...|.++|||+|.+++|
T Consensus         1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~-~~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~~d   77 (121)
T cd04016           1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGH-AVYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFTMD   77 (121)
T ss_pred             CcEEEEEEEEccCCCcCC-CCCCCceEEEEECC-EEEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCcCC
Confidence            489999999999998877 79999999999998 6779999876 79999999999999764 56899999999998875


Q ss_pred             ---------------------cEEEcccCCCCceeeEEEEEEEE
Q 016987          342 ---------------------QWVPILNSEYGAALSNMHLIYIY  364 (379)
Q Consensus       342 ---------------------~w~~L~~~~~g~~~g~i~l~~~~  364 (379)
                                           .|++|.+.+..+..|+|+|+++|
T Consensus        78 d~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y  121 (121)
T cd04016          78 ERIAWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY  121 (121)
T ss_pred             ceEEEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence                                 79999866666678999999987

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.73  E-value=2.9e-17  Score=134.79  Aligned_cols=98  Identities=23%  Similarity=0.364  Sum_probs=85.3

Q ss_pred             cEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccC-CCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC-
Q 016987          264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVD-NNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA-  341 (379)
Q Consensus       264 g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~-~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d-  341 (379)
                      |.|+|+|++|++|++.+..+++||||++++++ .+++|+++. +++||.|||+|.|.+.....+.|.++|||++..+.+ 
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~-~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~~~~   79 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGG-VTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRKPDL   79 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEECC-CccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCcc
Confidence            78999999999999999889999999999987 678888875 579999999999999876567899999999876532 


Q ss_pred             ------------------cEEEcccCCCCceeeEEEEEEEE
Q 016987          342 ------------------QWVPILNSEYGAALSNMHLIYIY  364 (379)
Q Consensus       342 ------------------~w~~L~~~~~g~~~g~i~l~~~~  364 (379)
                                        .|++|.  ..|+..|+++++++|
T Consensus        80 iG~~~~~l~~~~~~~~~~~w~~L~--~~~~~~G~i~l~l~f  118 (118)
T cd08681          80 IGDTEVDLSPALKEGEFDDWYELT--LKGRYAGEVYLELTF  118 (118)
T ss_pred             eEEEEEecHHHhhcCCCCCcEEec--cCCcEeeEEEEEEEC
Confidence                              799995  356789999999886

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.73  E-value=3.1e-17  Score=136.31  Aligned_cols=97  Identities=19%  Similarity=0.283  Sum_probs=83.0

Q ss_pred             EEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecC-----CCCceEEEEEEEcccCCC
Q 016987          266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAED-----KETQSLIFEVYIFLLFFP  340 (379)
Q Consensus       266 L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~-----~~~~~L~i~V~D~d~~~~  340 (379)
                      ++|+|++|+||+.++..|.+||||++.+++ .+++|+++++++||+|||+|.|.+.+     ...+.|.++|||+|.+++
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~-~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~   79 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGK-EKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGL   79 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEECC-eeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCC
Confidence            579999999999999889999999999987 68899999999999999999999876     346789999999998875


Q ss_pred             C----------------------cEEEcccCC--CCceeeEEEEEEE
Q 016987          341 A----------------------QWVPILNSE--YGAALSNMHLIYI  363 (379)
Q Consensus       341 d----------------------~w~~L~~~~--~g~~~g~i~l~~~  363 (379)
                      |                      .||+|.+..  .++..|+++++++
T Consensus        80 d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~  126 (126)
T cd08682          80 DKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ  126 (126)
T ss_pred             CceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence            4                      799997433  2356789988874

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.72  E-value=1.1e-16  Score=131.98  Aligned_cols=99  Identities=24%  Similarity=0.365  Sum_probs=87.5

Q ss_pred             EEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC----
Q 016987          266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA----  341 (379)
Q Consensus       266 L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d----  341 (379)
                      |+|+|++|++|+..|..|.+||||++.+++...++|+++.+++||.|||+|.|.+.+. .+.+.++|||+|.+++|    
T Consensus         2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~~iG   80 (121)
T cd04042           2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDDFMG   80 (121)
T ss_pred             eEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCcceE
Confidence            7899999999999998899999999999875678999999999999999999998765 57899999999998664    


Q ss_pred             ----------------cEEEcccCCCCceeeEEEEEEEEE
Q 016987          342 ----------------QWVPILNSEYGAALSNMHLIYIYK  365 (379)
Q Consensus       342 ----------------~w~~L~~~~~g~~~g~i~l~~~~~  365 (379)
                                      .|++|.+...++..|++.+.++|.
T Consensus        81 ~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~  120 (121)
T cd04042          81 SAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLT  120 (121)
T ss_pred             EEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEEC
Confidence                            699997665557899999998874

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.71  E-value=7.5e-17  Score=136.10  Aligned_cols=110  Identities=27%  Similarity=0.334  Sum_probs=94.7

Q ss_pred             cCCcEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCC
Q 016987          261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFP  340 (379)
Q Consensus       261 ~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~  340 (379)
                      ...|.|+|+|.+|.||..+|..++|||||.+.+++ ++.+|+++++++||+|||.|.|.+.++ ...|+++|||+|.+++
T Consensus         3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~-q~lkT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~fs~   80 (168)
T KOG1030|consen    3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGN-QKLKTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTFSS   80 (168)
T ss_pred             ccceEEEEEEEeecCeeeeccccCCCCeEEEEECC-eeeeeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCCCc
Confidence            35899999999999999999889999999999998 789999999999999999999999986 7899999999999998


Q ss_pred             C------------------cEEEcc-cCCCCceeeEEEEEEEEEEeeEEEEe
Q 016987          341 A------------------QWVPIL-NSEYGAALSNMHLIYIYKYLRICIYI  373 (379)
Q Consensus       341 d------------------~w~~L~-~~~~g~~~g~i~l~~~~~~~~~~~~~  373 (379)
                      |                  .|+ |. ...+|...|.+.++..-+|.+...-+
T Consensus        81 dD~mG~A~I~l~p~~~~~~~~~-l~~~~~~gt~~~~v~~s~dn~~~~es~i~  131 (168)
T KOG1030|consen   81 DDFMGEATIPLKPLLEAQKMDY-LKLELLTGTAIGKVLLSRDNCLNEESAII  131 (168)
T ss_pred             ccccceeeeccHHHHHHhhhhc-cccccCCCcEeeEEEeccccccccceEEE
Confidence            7                  354 33 23467778888888888877765443

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.70  E-value=2e-16  Score=133.05  Aligned_cols=100  Identities=28%  Similarity=0.439  Sum_probs=85.9

Q ss_pred             cCCcEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCC
Q 016987          261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFP  340 (379)
Q Consensus       261 ~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~  340 (379)
                      ...|.|+|+|++|++|++.|..|.+||||++.++. ..++|+++++++||.|||+|.|.+.+...+.|.++|||+|.+++
T Consensus        12 ~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~-~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~   90 (136)
T cd08375          12 SGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGS-QEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSP   90 (136)
T ss_pred             CCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECC-EeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCC
Confidence            56899999999999999999889999999999987 68999999999999999999999987667789999999998876


Q ss_pred             C-------------------------cEEEcccCCCCceeeEEEEEEEEE
Q 016987          341 A-------------------------QWVPILNSEYGAALSNMHLIYIYK  365 (379)
Q Consensus       341 d-------------------------~w~~L~~~~~g~~~g~i~l~~~~~  365 (379)
                      |                         .|+++    +++..|+++|+++++
T Consensus        91 d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~----~~~~~g~i~l~~~~~  136 (136)
T cd08375          91 DDFLGRTEIRVADILKETKESKGPITKRLLL----HEVPTGEVVVKLDLQ  136 (136)
T ss_pred             CCeeEEEEEEHHHhccccccCCCcEEEEecc----ccccceeEEEEEEeC
Confidence            5                         23333    355678888888764

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.69  E-value=2.4e-16  Score=130.43  Aligned_cols=72  Identities=26%  Similarity=0.377  Sum_probs=66.2

Q ss_pred             EEEEEEeeccc---ccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccC
Q 016987          265 KVAVTIVKANN---LKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLF  338 (379)
Q Consensus       265 ~L~V~V~~A~~---L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~  338 (379)
                      .|+|+|++|++   |+.+|..|.+||||++.+++ ++.||+++++++||+|||+|.|.+.+. ...|.++|||+|.+
T Consensus         1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~-~~~rTk~~~~~~nP~WnE~f~f~v~~~-~~~l~v~V~d~d~~   75 (126)
T cd08379           1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGP-KWVRTRTVEDSSNPRWNEQYTWPVYDP-CTVLTVGVFDNSQS   75 (126)
T ss_pred             CeEEEEEEeECCccccccccCCCCCeeEEEEECC-EEeEcCcccCCCCCcceeEEEEEecCC-CCEEEEEEEECCCc
Confidence            37999999999   88999999999999999988 688999999999999999999999775 45899999999987

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.69  E-value=3.2e-16  Score=133.97  Aligned_cols=99  Identities=18%  Similarity=0.246  Sum_probs=84.9

Q ss_pred             EEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCC-CCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC---
Q 016987          266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDN-NLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA---  341 (379)
Q Consensus       266 L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~-tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d---  341 (379)
                      |+|+|++|++|++++..|.+||||++++++ ++++|+++.+ ++||.|||+|.|.+.++..+.+.++|||++..++|   
T Consensus         2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~-~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l   80 (150)
T cd04019           2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGN-QVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL   80 (150)
T ss_pred             EEEEEEEeECCCCCCCCCCCCeEEEEEECC-EEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence            789999999999999999999999999998 7889998876 69999999999999776567899999999876443   


Q ss_pred             ---------------------cEEEcccCCC-------CceeeEEEEEEEEE
Q 016987          342 ---------------------QWVPILNSEY-------GAALSNMHLIYIYK  365 (379)
Q Consensus       342 ---------------------~w~~L~~~~~-------g~~~g~i~l~~~~~  365 (379)
                                           .||+|.+...       .+..|+++|.++|.
T Consensus        81 G~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~  132 (150)
T cd04019          81 GRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLD  132 (150)
T ss_pred             EEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEec
Confidence                                 7999986532       35568888888887

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.68  E-value=3.2e-16  Score=129.27  Aligned_cols=94  Identities=23%  Similarity=0.349  Sum_probs=82.7

Q ss_pred             EEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC----
Q 016987          266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA----  341 (379)
Q Consensus       266 L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d----  341 (379)
                      |+|+|++|++|+.+    .+||||++.+++ .+.+|++++++.||.|||+|.|.+.+.....|.++|||+|..+.|    
T Consensus         2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~-~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~lG~   76 (121)
T cd08378           2 LYVRVVKARGLPAN----SNDPVVEVKLGN-YKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFLGG   76 (121)
T ss_pred             EEEEEEEecCCCcc----cCCCEEEEEECC-ccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCceeee
Confidence            78999999999887    689999999987 688999999999999999999998776678899999999875332    


Q ss_pred             --------------------cEEEcccCCCCceeeEEEEEEEE
Q 016987          342 --------------------QWVPILNSEYGAALSNMHLIYIY  364 (379)
Q Consensus       342 --------------------~w~~L~~~~~g~~~g~i~l~~~~  364 (379)
                                          .||+|.+...++..|++.|++.|
T Consensus        77 ~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~  119 (121)
T cd08378          77 VCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWF  119 (121)
T ss_pred             EEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEe
Confidence                                69999877667889999998876

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.68  E-value=4.9e-16  Score=134.09  Aligned_cols=101  Identities=32%  Similarity=0.506  Sum_probs=82.6

Q ss_pred             CcEEEEEEeeccccccccc------------------------------CCCCCcEEEEEEcCeeeEeeeccCCCCCCeE
Q 016987          263 QGKVAVTIVKANNLKNMEM------------------------------IGKSDPYAVVHIKPLFKVKTNVVDNNLNPVW  312 (379)
Q Consensus       263 ~g~L~V~V~~A~~L~~~d~------------------------------~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~W  312 (379)
                      +|+|.|+|.+|++|+++|.                              .|.+||||++++++.+..+|++++++.||.|
T Consensus         6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W   85 (158)
T cd04015           6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW   85 (158)
T ss_pred             eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence            7999999999999999872                              4668999999998755679999999999999


Q ss_pred             eeEEEEEecCCCCceEEEEEEEcccCCCC-------------------cEEEcccCCCCc--eeeEEEEEEEE
Q 016987          313 NQTFELIAEDKETQSLIFEVYIFLLFFPA-------------------QWVPILNSEYGA--ALSNMHLIYIY  364 (379)
Q Consensus       313 ne~f~f~v~~~~~~~L~i~V~D~d~~~~d-------------------~w~~L~~~~~g~--~~g~i~l~~~~  364 (379)
                      ||+|.|.+.+. .+.|.++|||+|.++.+                   .|++|.+.....  ..+.++++++|
T Consensus        86 nE~F~~~~~~~-~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f  157 (158)
T cd04015          86 NESFHIYCAHY-ASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQF  157 (158)
T ss_pred             ceEEEEEccCC-CCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence            99999998764 56899999999987654                   799997543222  24567777666

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.67  E-value=4.3e-16  Score=129.57  Aligned_cols=100  Identities=23%  Similarity=0.276  Sum_probs=84.3

Q ss_pred             EEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCC---CceEEEEEEEcccCC-C
Q 016987          265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKE---TQSLIFEVYIFLLFF-P  340 (379)
Q Consensus       265 ~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~---~~~L~i~V~D~d~~~-~  340 (379)
                      .|+|+|++|++|+..+..|.+||||++++++ .+++|++++++.||.|||+|.|.+.+..   ...|.++|||++.++ +
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~   79 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDG-QKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRR   79 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEECC-EEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCC
Confidence            3799999999999999889999999999998 6789999999999999999999986532   357999999998875 3


Q ss_pred             C---------------------cEEEcccCC-CCceeeEEEEEEEEE
Q 016987          341 A---------------------QWVPILNSE-YGAALSNMHLIYIYK  365 (379)
Q Consensus       341 d---------------------~w~~L~~~~-~g~~~g~i~l~~~~~  365 (379)
                      |                     .||+|.... .++..|++.|++.+.
T Consensus        80 d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~  126 (127)
T cd04022          80 RSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT  126 (127)
T ss_pred             CCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence            3                     799997542 345789999888764

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.67  E-value=7.8e-16  Score=127.94  Aligned_cols=99  Identities=27%  Similarity=0.453  Sum_probs=85.2

Q ss_pred             cEEEEEEeeccccccccc--CCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC
Q 016987          264 GKVAVTIVKANNLKNMEM--IGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA  341 (379)
Q Consensus       264 g~L~V~V~~A~~L~~~d~--~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d  341 (379)
                      |+|+|+|++|++|+..+.  .+.+||||.+.++. .+++|++++++.||.|||+|.|.+.+...+.|.++|||+|..++|
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~-~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~   79 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGA-QRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGK   79 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECC-EEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCC
Confidence            789999999999999988  88999999999987 678999999999999999999999875578999999999876443


Q ss_pred             -----------------------cEEEcccCCC---CceeeEEEEEEE
Q 016987          342 -----------------------QWVPILNSEY---GAALSNMHLIYI  363 (379)
Q Consensus       342 -----------------------~w~~L~~~~~---g~~~g~i~l~~~  363 (379)
                                             .||+|.+.+.   ++..|+++|.++
T Consensus        80 ~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~  127 (128)
T cd04024          80 DYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFS  127 (128)
T ss_pred             CcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEE
Confidence                                   6999976532   346888888775

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.67  E-value=1.4e-15  Score=124.87  Aligned_cols=99  Identities=24%  Similarity=0.388  Sum_probs=86.1

Q ss_pred             cEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC--
Q 016987          264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA--  341 (379)
Q Consensus       264 g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d--  341 (379)
                      |.|+|+|++|++|+..+..+.+||||+++++. ..++|++++++.||.|||+|.|.+.+. .+.+.++|||++.++++  
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-~~~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~~~   78 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVN-ARLQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKPEF   78 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECC-EeeecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCCce
Confidence            78999999999999999889999999999987 578999999999999999999998764 57899999999986554  


Q ss_pred             ----------------cEEEcccCC-CCceeeEEEEEEEE
Q 016987          342 ----------------QWVPILNSE-YGAALSNMHLIYIY  364 (379)
Q Consensus       342 ----------------~w~~L~~~~-~g~~~g~i~l~~~~  364 (379)
                                      .|++|.+.. .++..|++.+++++
T Consensus        79 iG~~~~~l~~~~~~~~~~~~l~~~~~~~~~~G~i~l~~~~  118 (119)
T cd08377          79 LGKVAIPLLSIKNGERKWYALKDKKLRTRAKGSILLEMDV  118 (119)
T ss_pred             eeEEEEEHHHCCCCCceEEECcccCCCCceeeEEEEEEEe
Confidence                            799997543 45678999998876

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.66  E-value=1.3e-15  Score=124.44  Aligned_cols=94  Identities=27%  Similarity=0.338  Sum_probs=80.1

Q ss_pred             EEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC---
Q 016987          265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA---  341 (379)
Q Consensus       265 ~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d---  341 (379)
                      +++|+|++|++|+..+..+.+|||+++++++ .+++|+++++++||.|||+|.|.+.+...+.|.++|||++.+++|   
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~-~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~i   79 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGN-EKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFI   79 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEECC-EeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeE
Confidence            4789999999999999889999999999987 678999999999999999999999876578999999999988665   


Q ss_pred             -----------------cEEEcccCCCCceeeEEEEEEEE
Q 016987          342 -----------------QWVPILNSEYGAALSNMHLIYIY  364 (379)
Q Consensus       342 -----------------~w~~L~~~~~g~~~g~i~l~~~~  364 (379)
                                       .|++|.+.     .|++.+.+.|
T Consensus        80 G~~~~~l~~l~~~~~~~~w~~L~~~-----~G~~~~~~~~  114 (116)
T cd08376          80 GRCEIDLSALPREQTHSLELELEDG-----EGSLLLLLTL  114 (116)
T ss_pred             EEEEEeHHHCCCCCceEEEEEccCC-----CcEEEEEEEe
Confidence                             68888532     3666665554

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.66  E-value=9.6e-16  Score=126.38  Aligned_cols=98  Identities=19%  Similarity=0.265  Sum_probs=82.1

Q ss_pred             EEEEEeecccccccc-cCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC---
Q 016987          266 VAVTIVKANNLKNME-MIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA---  341 (379)
Q Consensus       266 L~V~V~~A~~L~~~d-~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d---  341 (379)
                      |+|+|++|+||++.+ ..|.+||||.++++....++|+++++|+||.|||+|.|.+.+. ...|.+.|||+|.+++|   
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~~i   80 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDSVI   80 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCceE
Confidence            689999999999874 4578999999999875578999999999999999999999753 57899999999998765   


Q ss_pred             -----------------cEEEcccC-CCCceeeEEEEEEEE
Q 016987          342 -----------------QWVPILNS-EYGAALSNMHLIYIY  364 (379)
Q Consensus       342 -----------------~w~~L~~~-~~g~~~g~i~l~~~~  364 (379)
                                       .|++|... ..++..|+++|+++|
T Consensus        81 G~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~  121 (121)
T cd08401          81 GKVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELRL  121 (121)
T ss_pred             EEEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence                             69999743 345568999888764

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.65  E-value=4.6e-16  Score=126.27  Aligned_cols=85  Identities=14%  Similarity=0.131  Sum_probs=73.8

Q ss_pred             ccccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC---eeeEeeeccCCCCCCeEeeEEEEEecC--CCCceE
Q 016987          254 DTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP---LFKVKTNVVDNNLNPVWNQTFELIAED--KETQSL  328 (379)
Q Consensus       254 d~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~---~~~~~T~v~~~tlnP~Wne~f~f~v~~--~~~~~L  328 (379)
                      .++..|.+..|.|+|+|++|++|+ .  .|.+||||++++.+   ..+++|+++++|+||.|||+|.|.+..  .....|
T Consensus         4 ~fsL~Y~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL   80 (118)
T cd08677           4 HYSLSYDKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTL   80 (118)
T ss_pred             EEEEEEcCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEE
Confidence            456778899999999999999998 2  46799999999964   257799999999999999999999854  356789


Q ss_pred             EEEEEEcccCCCC
Q 016987          329 IFEVYIFLLFFPA  341 (379)
Q Consensus       329 ~i~V~D~d~~~~d  341 (379)
                      .++|||+|+++++
T Consensus        81 ~~~V~d~Drfs~~   93 (118)
T cd08677          81 TLTLRCCDRFSRH   93 (118)
T ss_pred             EEEEEeCCCCCCC
Confidence            9999999999887

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.65  E-value=2.5e-15  Score=124.80  Aligned_cols=99  Identities=17%  Similarity=0.332  Sum_probs=81.5

Q ss_pred             CcEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC-
Q 016987          263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA-  341 (379)
Q Consensus       263 ~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d-  341 (379)
                      ...|+|+|++|+||+..   +.+||||++.+++.+..+|++. ++.||.|||+|.|.+.......+.+.|||++.+++| 
T Consensus         3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~   78 (126)
T cd08400           3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDS   78 (126)
T ss_pred             eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCC
Confidence            45799999999999875   4689999999987556788874 689999999999987654446799999999988765 


Q ss_pred             -------------------cEEEcccCC--CCceeeEEEEEEEEE
Q 016987          342 -------------------QWVPILNSE--YGAALSNMHLIYIYK  365 (379)
Q Consensus       342 -------------------~w~~L~~~~--~g~~~g~i~l~~~~~  365 (379)
                                         .|++|....  .++..|+++|+++|.
T Consensus        79 ~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~  123 (126)
T cd08400          79 EIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYS  123 (126)
T ss_pred             eEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEE
Confidence                               699997553  345679999999985

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.64  E-value=2e-15  Score=124.73  Aligned_cols=97  Identities=26%  Similarity=0.451  Sum_probs=83.3

Q ss_pred             EEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC---
Q 016987          265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA---  341 (379)
Q Consensus       265 ~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d---  341 (379)
                      +|+|+|++|++|+.++..+.+||||+++++. .+++|+++++++||.|||+|.|.+.+.....|.++|||++.+++|   
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~-~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~i   79 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNG-QTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFL   79 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEECC-EEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEe
Confidence            4899999999999999888999999999987 678999999999999999999999776567899999999987664   


Q ss_pred             -----------------cEEEcccC-----CCCceeeEEEEEE
Q 016987          342 -----------------QWVPILNS-----EYGAALSNMHLIY  362 (379)
Q Consensus       342 -----------------~w~~L~~~-----~~g~~~g~i~l~~  362 (379)
                                       .|+.|...     ..++..|.+.+.+
T Consensus        80 G~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~  122 (123)
T cd04025          80 GKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV  122 (123)
T ss_pred             EEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence                             79999742     3566788877765

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.64  E-value=2.2e-15  Score=126.27  Aligned_cols=99  Identities=21%  Similarity=0.363  Sum_probs=84.3

Q ss_pred             EEEEEEeecccccccccCCCCCcEEEEEEcCe------eeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccC
Q 016987          265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL------FKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLF  338 (379)
Q Consensus       265 ~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~------~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~  338 (379)
                      .|+|+|++|++|+..+..|.+||||++++.+.      .+++|+++++++||.|||+|.|.+... ...|.++|||+|.+
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~   79 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENRL   79 (133)
T ss_pred             CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCCC
Confidence            37999999999999998899999999998752      257899999999999999999998653 56899999999987


Q ss_pred             CCC--------------------------cEEEcccC-CCCceeeEEEEEEEE
Q 016987          339 FPA--------------------------QWVPILNS-EYGAALSNMHLIYIY  364 (379)
Q Consensus       339 ~~d--------------------------~w~~L~~~-~~g~~~g~i~l~~~~  364 (379)
                      ++|                          .||+|... ..|+..|+++++++|
T Consensus        80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~  132 (133)
T cd04033          80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY  132 (133)
T ss_pred             CCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence            653                          69999743 367789999999887

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.64  E-value=3.1e-15  Score=124.28  Aligned_cols=101  Identities=17%  Similarity=0.282  Sum_probs=86.7

Q ss_pred             CCcEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC
Q 016987          262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA  341 (379)
Q Consensus       262 ~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d  341 (379)
                      |.++|+|+|++|++|...+..|.+||||++.+++ .+++|++++++.||.|||+|.|.+.+. ...|.++|||++..+.+
T Consensus         1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~-~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~~d~   78 (126)
T cd04046           1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEG-ESVRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLLCDE   78 (126)
T ss_pred             CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECC-EEEEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCCCCC
Confidence            4678999999999999999889999999999987 678999999999999999999988764 67899999999987644


Q ss_pred             -----------------cEEEccc---CCCCceeeEEEEEEEE
Q 016987          342 -----------------QWVPILN---SEYGAALSNMHLIYIY  364 (379)
Q Consensus       342 -----------------~w~~L~~---~~~g~~~g~i~l~~~~  364 (379)
                                       .|++|..   ...|+..|.+.+++++
T Consensus        79 ~lG~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~  121 (126)
T cd04046          79 FLGQATLSADPNDSQTLRTLPLRKRGRDAAGEVPGTISVKVTS  121 (126)
T ss_pred             ceEEEEEecccCCCcCceEEEcccCCCCCCCCCCCEEEEEEEE
Confidence                             6888852   2567888888887754

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.64  E-value=2.7e-15  Score=123.41  Aligned_cols=95  Identities=27%  Similarity=0.526  Sum_probs=79.7

Q ss_pred             cEEEEEEeeccccccccc------CCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEccc
Q 016987          264 GKVAVTIVKANNLKNMEM------IGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLL  337 (379)
Q Consensus       264 g~L~V~V~~A~~L~~~d~------~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~  337 (379)
                      |+|+|+|++|++|+..+.      .|.+||||++++++ ..++|++++++.||.|||+|.|.+.+...+.|.++|||+|.
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~-~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~   79 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA-QTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDP   79 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECC-EeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCC
Confidence            789999999999998875      36899999999988 78999999999999999999999987667899999999987


Q ss_pred             CCCC-------------------cEEEcccCCCCceeeEEEEEEE
Q 016987          338 FFPA-------------------QWVPILNSEYGAALSNMHLIYI  363 (379)
Q Consensus       338 ~~~d-------------------~w~~L~~~~~g~~~g~i~l~~~  363 (379)
                      .+.+                   .|++|.+.    ..|++++.++
T Consensus        80 ~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~----~~G~~~~~~~  120 (121)
T cd08391          80 DKDDFLGRLSIDLGSVEKKGFIDEWLPLEDV----KSGRLHLKLE  120 (121)
T ss_pred             CCCCcEEEEEEEHHHhcccCccceEEECcCC----CCceEEEEEe
Confidence            7332                   79999644    3456666554

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.63  E-value=2.3e-15  Score=123.71  Aligned_cols=73  Identities=25%  Similarity=0.429  Sum_probs=65.4

Q ss_pred             EEEEEeecccccccccCCCCCcEEEEEEcC--eeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccC
Q 016987          266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLF  338 (379)
Q Consensus       266 L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~--~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~  338 (379)
                      |+|+|++|++|+..+..+.+||||++++.+  ..+++|++++++.||.|||+|.|.+.....+.|.++|||+|.+
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~   76 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV   76 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC
Confidence            789999999999998888999999999863  3578999999999999999999998765566799999999987

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.63  E-value=4.8e-15  Score=122.22  Aligned_cols=97  Identities=22%  Similarity=0.378  Sum_probs=82.2

Q ss_pred             EEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC----
Q 016987          266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA----  341 (379)
Q Consensus       266 L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d----  341 (379)
                      |.|+|++|++|++++..|.+||||++.+++....+|+++++++||.|||+|.|.+.+. .+.|.++|||++.+++|    
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~-~~~l~v~v~d~~~~~~d~~iG   80 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPG-FHTVSFYVLDEDTLSRDDVIG   80 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCC-CCEEEEEEEECCCCCCCCEEE
Confidence            7899999999999999999999999999875567999999999999999999998653 57899999999987664    


Q ss_pred             -----------------cEEEcccC-CCCceeeEEEEEEE
Q 016987          342 -----------------QWVPILNS-EYGAALSNMHLIYI  363 (379)
Q Consensus       342 -----------------~w~~L~~~-~~g~~~g~i~l~~~  363 (379)
                                       .|++|.+. ..++..|++++.++
T Consensus        81 ~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~  120 (121)
T cd04054          81 KVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS  120 (121)
T ss_pred             EEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence                             69999743 34456788877764

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.62  E-value=1.5e-15  Score=125.50  Aligned_cols=78  Identities=26%  Similarity=0.357  Sum_probs=68.7

Q ss_pred             CcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEe-c--CCCCceEEEEEEEc
Q 016987          263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIA-E--DKETQSLIFEVYIF  335 (379)
Q Consensus       263 ~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v-~--~~~~~~L~i~V~D~  335 (379)
                      .+.|+|+|++|++|+.++ .+.+||||++++.+    ..+++|++++++.||.|||+|.|.+ .  +.....|.++|||+
T Consensus        12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~   90 (122)
T cd08381          12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH   90 (122)
T ss_pred             CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence            799999999999999999 88999999999974    3478999999999999999999987 2  33467899999999


Q ss_pred             ccCCCC
Q 016987          336 LLFFPA  341 (379)
Q Consensus       336 d~~~~d  341 (379)
                      |.++++
T Consensus        91 d~~~~~   96 (122)
T cd08381          91 DSLVEN   96 (122)
T ss_pred             CCCcCC
Confidence            988765

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.62  E-value=4.7e-15  Score=124.70  Aligned_cols=98  Identities=22%  Similarity=0.355  Sum_probs=83.1

Q ss_pred             EEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCC---------CCceEEEEEEEc
Q 016987          265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDK---------ETQSLIFEVYIF  335 (379)
Q Consensus       265 ~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~---------~~~~L~i~V~D~  335 (379)
                      .|+|+|.+|++|+.+|..|.+||||+++++. .+++|+++++++||.|||+|.|.+...         ....+.++|||+
T Consensus         2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~-~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~   80 (135)
T cd04017           2 QLRAYIYQARDLLAADKSGLSDPFARVSFLN-QSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ   80 (135)
T ss_pred             EEEEEEEEeecCcCCCCCCCCCCEEEEEECC-eeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence            5899999999999999999999999999987 688999999999999999999975321         125689999999


Q ss_pred             ccCCCC------------------------cEEEcccCCCCceeeEEEEEEEEE
Q 016987          336 LLFFPA------------------------QWVPILNSEYGAALSNMHLIYIYK  365 (379)
Q Consensus       336 d~~~~d------------------------~w~~L~~~~~g~~~g~i~l~~~~~  365 (379)
                      |..++|                        .|++|.  +.|...|++.+++.+.
T Consensus        81 d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~--~~~~~~Geil~~~~~~  132 (135)
T cd04017          81 DSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIY--KGGQSAGELLAAFELI  132 (135)
T ss_pred             cCCCCCccceEEEeeeeeecccCCCCCCCceEEEee--cCCCchhheeEEeEEE
Confidence            987654                        799995  5567889988888775

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.61  E-value=2.3e-15  Score=124.90  Aligned_cols=88  Identities=24%  Similarity=0.235  Sum_probs=74.5

Q ss_pred             ccccccccCCcEEEEEEeecccccccccC-CCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecC--CCCc
Q 016987          254 DTSELELKPQGKVAVTIVKANNLKNMEMI-GKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAED--KETQ  326 (379)
Q Consensus       254 d~~~l~~~~~g~L~V~V~~A~~L~~~d~~-g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~--~~~~  326 (379)
                      .++..|.+..+.|+|+|++|+||++++.. |.+||||++++.+    ..+++|+++++++||.|||+|.|.+..  ....
T Consensus         5 ~~sl~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~   84 (125)
T cd08393           5 QFALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTR   84 (125)
T ss_pred             EEEEEEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCC
Confidence            34555777889999999999999999975 8899999999964    245799999999999999999999853  3456


Q ss_pred             eEEEEEEEcccCCCC
Q 016987          327 SLIFEVYIFLLFFPA  341 (379)
Q Consensus       327 ~L~i~V~D~d~~~~d  341 (379)
                      .|.++|||+|.++++
T Consensus        85 ~L~~~V~d~~~~~~~   99 (125)
T cd08393          85 VLNLSVWHRDSLGRN   99 (125)
T ss_pred             EEEEEEEeCCCCCCC
Confidence            899999999988765

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.61  E-value=8.5e-15  Score=121.60  Aligned_cols=97  Identities=24%  Similarity=0.409  Sum_probs=81.3

Q ss_pred             EEEEEeecccccccccCCCCCcEEEEEEcC-eeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC---
Q 016987          266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKP-LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA---  341 (379)
Q Consensus       266 L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~-~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d---  341 (379)
                      |.|+|++|++|+.  ..|.+||||+++++. ..+++|+++++++||.|||.|.|.+.. ..+.|.++|||+|..++|   
T Consensus         1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~l   77 (126)
T cd08678           1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKFL   77 (126)
T ss_pred             CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCceE
Confidence            5799999999988  668999999999964 356899999999999999999999864 367899999999998754   


Q ss_pred             -----------------cEEEcccCC--CCceeeEEEEEEEEE
Q 016987          342 -----------------QWVPILNSE--YGAALSNMHLIYIYK  365 (379)
Q Consensus       342 -----------------~w~~L~~~~--~g~~~g~i~l~~~~~  365 (379)
                                       .|++|....  .++..|++.+.++|.
T Consensus        78 G~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~  120 (126)
T cd08678          78 GLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFM  120 (126)
T ss_pred             EEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEe
Confidence                             799997442  356688888888874

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.61  E-value=2.7e-15  Score=124.46  Aligned_cols=87  Identities=25%  Similarity=0.276  Sum_probs=73.4

Q ss_pred             cccccccCCcEEEEEEeeccccccccc-CCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecC--CCCce
Q 016987          255 TSELELKPQGKVAVTIVKANNLKNMEM-IGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAED--KETQS  327 (379)
Q Consensus       255 ~~~l~~~~~g~L~V~V~~A~~L~~~d~-~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~--~~~~~  327 (379)
                      ++..|....|.|.|+|++|+||+..+. .|.+||||++++.+    ..+++|+++++++||.|||+|.|.+..  .....
T Consensus         6 ~sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~   85 (125)
T cd04029           6 FSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRT   85 (125)
T ss_pred             EEEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCE
Confidence            455577889999999999999998875 47899999999864    246799999999999999999999854  23567


Q ss_pred             EEEEEEEcccCCCC
Q 016987          328 LIFEVYIFLLFFPA  341 (379)
Q Consensus       328 L~i~V~D~d~~~~d  341 (379)
                      |.++|||+|.++++
T Consensus        86 L~~~V~d~~~~~~~   99 (125)
T cd04029          86 LQLSVWHYDRFGRN   99 (125)
T ss_pred             EEEEEEECCCCCCC
Confidence            99999999987665

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.60  E-value=4.6e-15  Score=125.71  Aligned_cols=79  Identities=19%  Similarity=0.254  Sum_probs=68.2

Q ss_pred             CCcEEEEEEeecccccccc-cCCCCCcEEEEEEcCe----eeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEE-Ec
Q 016987          262 PQGKVAVTIVKANNLKNME-MIGKSDPYAVVHIKPL----FKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVY-IF  335 (379)
Q Consensus       262 ~~g~L~V~V~~A~~L~~~d-~~g~sdPyv~v~~~~~----~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~-D~  335 (379)
                      ..|.|.|+|++|+||++.+ ..|.+||||++++.+.    .+++|+++++++||.|||+|.|.+. ..+..|.++|| |+
T Consensus        27 ~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~  105 (146)
T cd04028          27 KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDY  105 (146)
T ss_pred             CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCC
Confidence            4789999999999999874 5688999999999652    3789999999999999999999998 56789999999 67


Q ss_pred             ccCCCC
Q 016987          336 LLFFPA  341 (379)
Q Consensus       336 d~~~~d  341 (379)
                      +.++++
T Consensus       106 ~~~~~~  111 (146)
T cd04028         106 GRMDKK  111 (146)
T ss_pred             CCCCCC
Confidence            776654

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.60  E-value=5.5e-15  Score=121.24  Aligned_cols=76  Identities=30%  Similarity=0.380  Sum_probs=63.8

Q ss_pred             EEEEEEeecccccccccCCCCCcEEEEEEc----C--eeeEeeeccCCCCCCeEeeEEEEEecC---CCCceEEEEEEEc
Q 016987          265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIK----P--LFKVKTNVVDNNLNPVWNQTFELIAED---KETQSLIFEVYIF  335 (379)
Q Consensus       265 ~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~----~--~~~~~T~v~~~tlnP~Wne~f~f~v~~---~~~~~L~i~V~D~  335 (379)
                      .|+|+|++|++|+..+ .|.+||||++++.    +  .++++|+++.+++||+|||+|.|.+.+   .....|.+.|||+
T Consensus         1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~   79 (120)
T cd08395           1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY   79 (120)
T ss_pred             CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence            3799999999999988 4999999999972    1  245789999999999999999999964   2345799999999


Q ss_pred             ccCCCC
Q 016987          336 LLFFPA  341 (379)
Q Consensus       336 d~~~~d  341 (379)
                      |..++|
T Consensus        80 d~~~~d   85 (120)
T cd08395          80 CFARDD   85 (120)
T ss_pred             cccCCC
Confidence            977655

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.60  E-value=4.8e-15  Score=120.35  Aligned_cols=78  Identities=26%  Similarity=0.428  Sum_probs=68.2

Q ss_pred             cEEEEEEeecccccccccC-CCCCcEEEEEEcC--eeeEeeeccCCCCCCeEeeEEEEEecCC---CCceEEEEEEEccc
Q 016987          264 GKVAVTIVKANNLKNMEMI-GKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIAEDK---ETQSLIFEVYIFLL  337 (379)
Q Consensus       264 g~L~V~V~~A~~L~~~d~~-g~sdPyv~v~~~~--~~~~~T~v~~~tlnP~Wne~f~f~v~~~---~~~~L~i~V~D~d~  337 (379)
                      |+|+|+|++|++|+..+.. +.+||||++++.+  ...++|+++++++||.|||+|.|.+...   ..+.|.++|||+|.
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~   80 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR   80 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence            7899999999999999987 8999999999853  2468999999999999999999987543   35689999999999


Q ss_pred             CCCC
Q 016987          338 FFPA  341 (379)
Q Consensus       338 ~~~d  341 (379)
                      +++|
T Consensus        81 ~~~d   84 (111)
T cd04041          81 FTAD   84 (111)
T ss_pred             CCCC
Confidence            8765

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.59  E-value=1.2e-14  Score=120.30  Aligned_cols=95  Identities=20%  Similarity=0.339  Sum_probs=80.6

Q ss_pred             EEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCC--C--
Q 016987          266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFP--A--  341 (379)
Q Consensus       266 L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~--d--  341 (379)
                      |+|+|++|++|+..+..+.+||||++++++...++|+++++++||.|||+|.|.+..  .+.|.++|||++.+++  |  
T Consensus         2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d~~   79 (123)
T cd08382           2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQGF   79 (123)
T ss_pred             eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCCce
Confidence            789999999999999889999999999975468899999999999999999999975  6789999999998754  2  


Q ss_pred             -------------------cEEEcccCC---CCceeeEEEEEE
Q 016987          342 -------------------QWVPILNSE---YGAALSNMHLIY  362 (379)
Q Consensus       342 -------------------~w~~L~~~~---~g~~~g~i~l~~  362 (379)
                                         .|++|....   .|...|++.+++
T Consensus        80 lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~  122 (123)
T cd08382          80 LGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL  122 (123)
T ss_pred             EeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence                               588885433   466678877765

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.59  E-value=5.3e-15  Score=123.10  Aligned_cols=88  Identities=24%  Similarity=0.251  Sum_probs=74.6

Q ss_pred             ccccccccCCcEEEEEEeecccccccccC-CCCCcEEEEEEcCe----eeEeeeccCCCCCCeEeeEEEEEecCC--CCc
Q 016987          254 DTSELELKPQGKVAVTIVKANNLKNMEMI-GKSDPYAVVHIKPL----FKVKTNVVDNNLNPVWNQTFELIAEDK--ETQ  326 (379)
Q Consensus       254 d~~~l~~~~~g~L~V~V~~A~~L~~~d~~-g~sdPyv~v~~~~~----~~~~T~v~~~tlnP~Wne~f~f~v~~~--~~~  326 (379)
                      .++..|....+.|.|+|++|+||++++.. |.+||||++++.+.    .++||+++++++||+|||+|.|.+...  ...
T Consensus         5 ~~sl~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~   84 (128)
T cd08392           5 EFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSR   84 (128)
T ss_pred             EEEEEEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCc
Confidence            34556778899999999999999999875 89999999999652    367999999999999999999998542  356


Q ss_pred             eEEEEEEEcccCCCC
Q 016987          327 SLIFEVYIFLLFFPA  341 (379)
Q Consensus       327 ~L~i~V~D~d~~~~d  341 (379)
                      .|.++|||++.++++
T Consensus        85 ~L~v~V~~~~~~~~~   99 (128)
T cd08392          85 QLQVSVWHSRTLKRR   99 (128)
T ss_pred             EEEEEEEeCCCCcCc
Confidence            899999999987654

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.59  E-value=4.3e-15  Score=122.97  Aligned_cols=88  Identities=24%  Similarity=0.365  Sum_probs=75.2

Q ss_pred             ccccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC--eeeEeeeccCCCCCCeEeeEEEEEecCC--CCceEE
Q 016987          254 DTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLI  329 (379)
Q Consensus       254 d~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~--~~~~~T~v~~~tlnP~Wne~f~f~v~~~--~~~~L~  329 (379)
                      .++..|.+..|.|.|+|++|++|+.++..|.+||||++++.+  ...++|++++++.||.|||+|.|.+...  ....|.
T Consensus         6 ~~sl~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~   85 (124)
T cd08387           6 HFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLE   85 (124)
T ss_pred             EEEEEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEE
Confidence            345557788999999999999999999889999999999853  3568999999999999999999998642  356899


Q ss_pred             EEEEEcccCCCC
Q 016987          330 FEVYIFLLFFPA  341 (379)
Q Consensus       330 i~V~D~d~~~~d  341 (379)
                      ++|||+|.+++|
T Consensus        86 i~V~d~~~~~~~   97 (124)
T cd08387          86 VLLYDFDQFSRD   97 (124)
T ss_pred             EEEEECCCCCCC
Confidence            999999988765

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.58  E-value=5.5e-15  Score=122.12  Aligned_cols=88  Identities=15%  Similarity=0.185  Sum_probs=76.1

Q ss_pred             ccccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcCe-----eeEeeeccCCCCCCeEeeEEEEEecC--CCCc
Q 016987          254 DTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL-----FKVKTNVVDNNLNPVWNQTFELIAED--KETQ  326 (379)
Q Consensus       254 d~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~-----~~~~T~v~~~tlnP~Wne~f~f~v~~--~~~~  326 (379)
                      .++..|.+..+.|.|+|++|+||++.+..+.+||||++++.+.     .+++|+++++++||+|||+|.|.+..  ....
T Consensus         4 ~~sL~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~   83 (124)
T cd08680           4 QIGLRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQK   83 (124)
T ss_pred             EEEEEECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcC
Confidence            3456688899999999999999999988889999999998652     37899999999999999999999854  3467


Q ss_pred             eEEEEEEEcccCCCC
Q 016987          327 SLIFEVYIFLLFFPA  341 (379)
Q Consensus       327 ~L~i~V~D~d~~~~d  341 (379)
                      .|.++|||+|.++++
T Consensus        84 ~L~~~V~~~~~~~~~   98 (124)
T cd08680          84 TLQVDVCSVGPDQQE   98 (124)
T ss_pred             EEEEEEEeCCCCCce
Confidence            899999999987665

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.58  E-value=2.2e-14  Score=118.46  Aligned_cols=99  Identities=27%  Similarity=0.355  Sum_probs=82.2

Q ss_pred             CcEEEEEEeeccccccccc-CCCCCcEEEEEEcC-eeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCC
Q 016987          263 QGKVAVTIVKANNLKNMEM-IGKSDPYAVVHIKP-LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFP  340 (379)
Q Consensus       263 ~g~L~V~V~~A~~L~~~d~-~g~sdPyv~v~~~~-~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~  340 (379)
                      .|.|+|+|.+|++|+..+. .+.+||||++.+++ ...++|+++.++.||.|||+|.|.+.. ..+.|.++|||++..++
T Consensus         1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~-~~~~l~~~v~d~~~~~~   79 (124)
T cd04044           1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNS-LTEPLNLTVYDFNDKRK   79 (124)
T ss_pred             CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCC-CCCEEEEEEEecCCCCC
Confidence            4889999999999997663 46789999999987 478999999999999999999999874 47899999999998766


Q ss_pred             C--------------------c-EEEcccCCCCceeeEEEEEEEE
Q 016987          341 A--------------------Q-WVPILNSEYGAALSNMHLIYIY  364 (379)
Q Consensus       341 d--------------------~-w~~L~~~~~g~~~g~i~l~~~~  364 (379)
                      |                    . |.++  ...|+..|+++++++|
T Consensus        80 d~~iG~~~~~l~~l~~~~~~~~~~~~~--~~~~k~~G~i~~~l~~  122 (124)
T cd04044          80 DKLIGTAEFDLSSLLQNPEQENLTKNL--LRNGKPVGELNYDLRF  122 (124)
T ss_pred             CceeEEEEEEHHHhccCccccCcchhh--hcCCccceEEEEEEEe
Confidence            4                    2 3334  2467788999888877

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.58  E-value=1.3e-15  Score=144.52  Aligned_cols=95  Identities=33%  Similarity=0.482  Sum_probs=84.0

Q ss_pred             cCCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecCC-CCceEEEEEEEc
Q 016987          261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDK-ETQSLIFEVYIF  335 (379)
Q Consensus       261 ~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~~-~~~~L~i~V~D~  335 (379)
                      -....|+|+|.+|+||.++|.+|.||||+++.+-+    ..+++|++++.++||+|||+|.|.+... .++.|.++||||
T Consensus       177 ~~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDW  256 (683)
T KOG0696|consen  177 IKRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDW  256 (683)
T ss_pred             ecCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecc
Confidence            35678999999999999999999999999999865    3578999999999999999999998532 467899999999


Q ss_pred             ccCCCC-------------------cEEEcccCCCCcee
Q 016987          336 LLFFPA-------------------QWVPILNSEYGAAL  355 (379)
Q Consensus       336 d~~~~d-------------------~w~~L~~~~~g~~~  355 (379)
                      |+.+++                   +||.|+++++|+++
T Consensus       257 DrTsRNDFMGslSFgisEl~K~p~~GWyKlLsqeEGEyy  295 (683)
T KOG0696|consen  257 DRTSRNDFMGSLSFGISELQKAPVDGWYKLLSQEEGEYY  295 (683)
T ss_pred             cccccccccceecccHHHHhhcchhhHHHHhhhhcCcee
Confidence            998774                   89999999999975

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.58  E-value=6.8e-15  Score=123.60  Aligned_cols=88  Identities=24%  Similarity=0.143  Sum_probs=75.6

Q ss_pred             ccccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcCe----eeEeeeccCCCCCCeEeeEEEEEecC--CCCce
Q 016987          254 DTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL----FKVKTNVVDNNLNPVWNQTFELIAED--KETQS  327 (379)
Q Consensus       254 d~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~----~~~~T~v~~~tlnP~Wne~f~f~v~~--~~~~~  327 (379)
                      .++..|.+..+.|.|+|++|+||+..+..|.+||||++++.+.    .+++|+++++++||+|||+|.|.+..  .....
T Consensus         5 ~~sL~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~   84 (136)
T cd08406           5 LLSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLS   84 (136)
T ss_pred             EEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcE
Confidence            3456677889999999999999999998899999999998541    35689999999999999999999854  34678


Q ss_pred             EEEEEEEcccCCCC
Q 016987          328 LIFEVYIFLLFFPA  341 (379)
Q Consensus       328 L~i~V~D~d~~~~d  341 (379)
                      |.++|||+|.++++
T Consensus        85 l~~~V~~~d~~~~~   98 (136)
T cd08406          85 LRVTVAESTEDGKT   98 (136)
T ss_pred             EEEEEEeCCCCCCC
Confidence            99999999988776

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.57  E-value=3.2e-14  Score=118.34  Aligned_cols=96  Identities=26%  Similarity=0.421  Sum_probs=80.3

Q ss_pred             EEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccC------
Q 016987          265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLF------  338 (379)
Q Consensus       265 ~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~------  338 (379)
                      .|+|+|++|++|+..|..|.+||||++++++ ..++|+++++++||.|||+|.|.+... ...|.++|||+|..      
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~~~   79 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGK-TKKRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSRLK   79 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCCcCcEEEEEECC-EeeecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccccc
Confidence            6899999999999999889999999999987 678999999999999999999988654 56899999999852      


Q ss_pred             -----CCC------------------cEEEcccC-CCCceeeEEEEEE
Q 016987          339 -----FPA------------------QWVPILNS-EYGAALSNMHLIY  362 (379)
Q Consensus       339 -----~~d------------------~w~~L~~~-~~g~~~g~i~l~~  362 (379)
                           ++|                  .|++|... ..++..|++++++
T Consensus        80 ~~~~~~~~~~iG~~~i~l~~~~~~~~~w~~L~~~~~~~~~~G~i~~~~  127 (127)
T cd04027          80 QKFTRESDDFLGQTIIEVRTLSGEMDVWYNLEKRTDKSAVSGAIRLHI  127 (127)
T ss_pred             eeccccCCCcceEEEEEhHHccCCCCeEEECccCCCCCcEeEEEEEEC
Confidence                 122                  79999743 3456788888764

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.57  E-value=1e-14  Score=120.70  Aligned_cols=87  Identities=26%  Similarity=0.294  Sum_probs=73.8

Q ss_pred             cccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecC---CCCce
Q 016987          255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAED---KETQS  327 (379)
Q Consensus       255 ~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~---~~~~~  327 (379)
                      ++..|....+.|+|+|++|++|+..+..+.+||||++++.+    ..+++|++++++.||.|||+|.|.+..   .....
T Consensus         7 ~~l~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~   86 (125)
T cd04031           7 IQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERT   86 (125)
T ss_pred             EEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCE
Confidence            44556778899999999999999999888999999999864    357899999999999999999998633   23568


Q ss_pred             EEEEEEEcccCCCC
Q 016987          328 LIFEVYIFLLFFPA  341 (379)
Q Consensus       328 L~i~V~D~d~~~~d  341 (379)
                      |.++|||+|.+++|
T Consensus        87 l~~~V~d~~~~~~~  100 (125)
T cd04031          87 LEVTVWDYDRDGEN  100 (125)
T ss_pred             EEEEEEeCCCCCCC
Confidence            99999999987654

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.57  E-value=1.8e-14  Score=115.66  Aligned_cols=72  Identities=25%  Similarity=0.340  Sum_probs=66.6

Q ss_pred             EEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEccc
Q 016987          265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLL  337 (379)
Q Consensus       265 ~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~  337 (379)
                      .|.|+|++|++|+..+..+.+||||++++++ +.++|++++++.||.|||+|.|.+.++..+.|.++|||++.
T Consensus         1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~-~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~   72 (105)
T cd04050           1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGK-TTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT   72 (105)
T ss_pred             CEEEEEeeecCCCCcccCCCCCcEEEEEECC-EEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC
Confidence            3789999999999998889999999999998 78999999999999999999999988767889999999875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.56  E-value=1.5e-14  Score=121.67  Aligned_cols=88  Identities=23%  Similarity=0.197  Sum_probs=74.7

Q ss_pred             ccccccccCCcEEEEEEeeccccccccc--CCCCCcEEEEEEcCe----eeEeeeccCCCCCCeEeeEEEEEecC--CCC
Q 016987          254 DTSELELKPQGKVAVTIVKANNLKNMEM--IGKSDPYAVVHIKPL----FKVKTNVVDNNLNPVWNQTFELIAED--KET  325 (379)
Q Consensus       254 d~~~l~~~~~g~L~V~V~~A~~L~~~d~--~g~sdPyv~v~~~~~----~~~~T~v~~~tlnP~Wne~f~f~v~~--~~~  325 (379)
                      .++..|.+..+.|.|+|++|+||...|.  .+.+||||++++.+.    .+++|+++++++||+|||+|.|.+..  ...
T Consensus         5 ~~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~   84 (138)
T cd08407           5 LLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAA   84 (138)
T ss_pred             EEEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCc
Confidence            3566688899999999999999999883  345899999998652    36789999999999999999999864  335


Q ss_pred             ceEEEEEEEcccCCCC
Q 016987          326 QSLIFEVYIFLLFFPA  341 (379)
Q Consensus       326 ~~L~i~V~D~d~~~~d  341 (379)
                      ..|.++|||+|.++++
T Consensus        85 ~~L~~~V~d~d~~~~~  100 (138)
T cd08407          85 SSVELEVLNQDSPGQS  100 (138)
T ss_pred             cEEEEEEEeCCCCcCc
Confidence            6799999999998876

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.55  E-value=4.3e-14  Score=116.36  Aligned_cols=89  Identities=30%  Similarity=0.428  Sum_probs=77.8

Q ss_pred             cEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC--
Q 016987          264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA--  341 (379)
Q Consensus       264 g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d--  341 (379)
                      |.|+|+|++|++|+..+..+.+||||++++++...++|++++++.||.|||+|.|.+... .+.|.++|||++.+++|  
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d~~   79 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKDRS   79 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCCCe
Confidence            789999999999999998899999999999775678999999999999999999988764 57899999999988765  


Q ss_pred             -----------------cEEEcccCCCCc
Q 016987          342 -----------------QWVPILNSEYGA  353 (379)
Q Consensus       342 -----------------~w~~L~~~~~g~  353 (379)
                                       +||.|.+.++++
T Consensus        80 IG~~~~~l~~l~~~~~~~~~~~~~~~~~~  108 (120)
T cd04045          80 LGSVEINVSDLIKKNEDGKYVEYDDEEER  108 (120)
T ss_pred             eeEEEEeHHHhhCCCCCceEEecCCCcce
Confidence                             788887666444

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.55  E-value=7e-14  Score=117.03  Aligned_cols=77  Identities=23%  Similarity=0.368  Sum_probs=66.7

Q ss_pred             CcEEEEEEeecccccccccC----------CCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEE
Q 016987          263 QGKVAVTIVKANNLKNMEMI----------GKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEV  332 (379)
Q Consensus       263 ~g~L~V~V~~A~~L~~~d~~----------g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V  332 (379)
                      .|.|+|+|++|++|+..+..          +.+||||++.+++....+|+++++++||.|||+|.|.+.+  ...+.+.|
T Consensus         3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~--~~~l~~~v   80 (132)
T cd04014           3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN--GRNLELTV   80 (132)
T ss_pred             ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC--CCEEEEEE
Confidence            58899999999999988863          5789999999988556799999999999999999999973  57899999


Q ss_pred             EEcccCCCC
Q 016987          333 YIFLLFFPA  341 (379)
Q Consensus       333 ~D~d~~~~d  341 (379)
                      ||++.+++|
T Consensus        81 ~d~~~~~~~   89 (132)
T cd04014          81 FHDAAIGPD   89 (132)
T ss_pred             EeCCCCCCC
Confidence            999876543

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.55  E-value=1.7e-14  Score=119.12  Aligned_cols=88  Identities=30%  Similarity=0.326  Sum_probs=73.8

Q ss_pred             ccccccccCCcEEEEEEeecccccccc-cCCCCCcEEEEEEcCe----eeEeeeccCCCCCCeEeeEEEEEecCC--CCc
Q 016987          254 DTSELELKPQGKVAVTIVKANNLKNME-MIGKSDPYAVVHIKPL----FKVKTNVVDNNLNPVWNQTFELIAEDK--ETQ  326 (379)
Q Consensus       254 d~~~l~~~~~g~L~V~V~~A~~L~~~d-~~g~sdPyv~v~~~~~----~~~~T~v~~~tlnP~Wne~f~f~v~~~--~~~  326 (379)
                      .++..|....+.|+|+|++|+||+..+ ..+.+||||++++.+.    .+++|++++++.||.|||+|.|.+...  ...
T Consensus         4 ~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~   83 (123)
T cd08521           4 EFSLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETR   83 (123)
T ss_pred             EEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCC
Confidence            345557788999999999999999988 6789999999998531    468999999999999999999988542  356


Q ss_pred             eEEEEEEEcccCCCC
Q 016987          327 SLIFEVYIFLLFFPA  341 (379)
Q Consensus       327 ~L~i~V~D~d~~~~d  341 (379)
                      .|.++|||++.++++
T Consensus        84 ~l~i~v~d~~~~~~~   98 (123)
T cd08521          84 TLQLSVWHHDRFGRN   98 (123)
T ss_pred             EEEEEEEeCCCCcCC
Confidence            899999999987665

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.55  E-value=2.4e-14  Score=118.46  Aligned_cols=87  Identities=34%  Similarity=0.439  Sum_probs=74.1

Q ss_pred             cccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC--eeeEeeeccCCCCCCeEeeEEEEEecC--CCCceEEE
Q 016987          255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIAED--KETQSLIF  330 (379)
Q Consensus       255 ~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~--~~~~~T~v~~~tlnP~Wne~f~f~v~~--~~~~~L~i  330 (379)
                      ++..|....+.|+|+|++|+||+..+..+.+||||++++.+  ..+++|++++++.||.|||+|.|.+..  .....|.+
T Consensus         7 ~~l~y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~   86 (124)
T cd08385           7 FSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVF   86 (124)
T ss_pred             EEEEEeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEE
Confidence            34446678899999999999999999889999999999864  246799999999999999999999854  23568999


Q ss_pred             EEEEcccCCCC
Q 016987          331 EVYIFLLFFPA  341 (379)
Q Consensus       331 ~V~D~d~~~~d  341 (379)
                      +|||+|.+++|
T Consensus        87 ~V~d~d~~~~~   97 (124)
T cd08385          87 SVYDFDRFSKH   97 (124)
T ss_pred             EEEeCCCCCCC
Confidence            99999988665

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.54  E-value=3.6e-14  Score=114.53  Aligned_cols=77  Identities=19%  Similarity=0.254  Sum_probs=66.6

Q ss_pred             cEEEEEEeecccccccccC----CCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCC-CCceEEEEEEEcccC
Q 016987          264 GKVAVTIVKANNLKNMEMI----GKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDK-ETQSLIFEVYIFLLF  338 (379)
Q Consensus       264 g~L~V~V~~A~~L~~~d~~----g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~-~~~~L~i~V~D~d~~  338 (379)
                      |+|.|+|++|++|+..+..    +.+||||++++++ ++++|+++++++||+|||+|.|.+.+. ....|.++|||+|.+
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~-~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~   79 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGR-RVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKF   79 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECC-EeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCC
Confidence            7899999999999987642    3489999999987 678999999999999999999998653 245799999999998


Q ss_pred             CCC
Q 016987          339 FPA  341 (379)
Q Consensus       339 ~~d  341 (379)
                      ++|
T Consensus        80 ~~d   82 (108)
T cd04039          80 SFN   82 (108)
T ss_pred             CCC
Confidence            776

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.54  E-value=2.9e-14  Score=115.51  Aligned_cols=75  Identities=27%  Similarity=0.433  Sum_probs=66.3

Q ss_pred             EEEEEeeccccccccc-CCCCCcEEEEEEcCeeeEeeeccCCCCCCeE-eeEEEEEecCC--CCceEEEEEEEcccCCCC
Q 016987          266 VAVTIVKANNLKNMEM-IGKSDPYAVVHIKPLFKVKTNVVDNNLNPVW-NQTFELIAEDK--ETQSLIFEVYIFLLFFPA  341 (379)
Q Consensus       266 L~V~V~~A~~L~~~d~-~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~W-ne~f~f~v~~~--~~~~L~i~V~D~d~~~~d  341 (379)
                      |+|+|++|++|+.++. .|.+||||++++++ .+++|+++++++||.| ||+|.|.+...  ..+.|.++|||+|.+++|
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~-~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~   79 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGS-TTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAN   79 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEECC-eeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCC
Confidence            5899999999999884 68899999999988 7899999999999999 99999998653  246899999999988765

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.53  E-value=3.7e-14  Score=118.12  Aligned_cols=95  Identities=28%  Similarity=0.387  Sum_probs=76.5

Q ss_pred             ccccccccCCcEEEEEEeecccccccccC-CCCCcEEEEEEcC--eeeEeeeccCCCCCCeEeeEEEEE-ec--CCCCce
Q 016987          254 DTSELELKPQGKVAVTIVKANNLKNMEMI-GKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELI-AE--DKETQS  327 (379)
Q Consensus       254 d~~~l~~~~~g~L~V~V~~A~~L~~~d~~-g~sdPyv~v~~~~--~~~~~T~v~~~tlnP~Wne~f~f~-v~--~~~~~~  327 (379)
                      .++..|....+.|+|+|++|+||+..+.. +.+||||++.+.+  .++.||+++++++||.|||+|.|. +.  +.....
T Consensus         6 ~~~l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~   85 (128)
T cd08388           6 FFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLS   85 (128)
T ss_pred             EEEEEEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCE
Confidence            34555778899999999999999998876 8899999999864  346799999999999999999994 43  223457


Q ss_pred             EEEEEEEcccCCCC-----cEEEccc
Q 016987          328 LIFEVYIFLLFFPA-----QWVPILN  348 (379)
Q Consensus       328 L~i~V~D~d~~~~d-----~w~~L~~  348 (379)
                      |.++|||+|.+++|     ..++|.+
T Consensus        86 L~~~V~d~d~~~~d~~lG~~~i~L~~  111 (128)
T cd08388          86 LHFAVLSFDRYSRDDVIGEVVCPLAG  111 (128)
T ss_pred             EEEEEEEcCCCCCCceeEEEEEeccc
Confidence            99999999998776     3555543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.53  E-value=4e-14  Score=119.38  Aligned_cols=89  Identities=21%  Similarity=0.257  Sum_probs=76.7

Q ss_pred             cccccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcCe-----eeEeeeccCCCCCCeEeeEEEEEecC--CCC
Q 016987          253 VDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL-----FKVKTNVVDNNLNPVWNQTFELIAED--KET  325 (379)
Q Consensus       253 ~d~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~-----~~~~T~v~~~tlnP~Wne~f~f~v~~--~~~  325 (379)
                      +.++..|....+.|.|+|++|+||+..+..|.+||||++++.+.     .+++|++++++.||+|||+|.|.+..  ...
T Consensus         4 i~~sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~   83 (138)
T cd08408           4 LLLGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSE   83 (138)
T ss_pred             EEEEeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCc
Confidence            34566788899999999999999999998899999999998641     35799999999999999999999864  345


Q ss_pred             ceEEEEEEEcccCCCC
Q 016987          326 QSLIFEVYIFLLFFPA  341 (379)
Q Consensus       326 ~~L~i~V~D~d~~~~d  341 (379)
                      ..|.++|||+|.++++
T Consensus        84 ~~L~~~V~~~~~~~~~   99 (138)
T cd08408          84 VTLMFSVYNKRKMKRK   99 (138)
T ss_pred             cEEEEEEEECCCCCCC
Confidence            6899999999988776

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.53  E-value=1.1e-13  Score=115.11  Aligned_cols=94  Identities=32%  Similarity=0.388  Sum_probs=78.4

Q ss_pred             EeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCC--CCceEEEEEEEcccCCCC------
Q 016987          270 IVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLIFEVYIFLLFFPA------  341 (379)
Q Consensus       270 V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~--~~~~L~i~V~D~d~~~~d------  341 (379)
                      |++|++|+.  ..|.+||||+++++. .+++|++++++.||.|||+|.|.+...  ..+.|.++|||++..++|      
T Consensus         2 vi~a~~L~~--~~g~~Dpyv~v~~~~-~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~   78 (127)
T cd08373           2 VVSLKNLPG--LKGKGDRIAKVTFRG-VKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSA   78 (127)
T ss_pred             eEEeeCCcc--cCCCCCCEEEEEECC-EeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEE
Confidence            678999988  678999999999987 578999999999999999999999653  467899999999988764      


Q ss_pred             --------------cEEEcccCCCCceeeEEEEEEEEEE
Q 016987          342 --------------QWVPILNSEYGAALSNMHLIYIYKY  366 (379)
Q Consensus       342 --------------~w~~L~~~~~g~~~g~i~l~~~~~~  366 (379)
                                    .|++|.+.......|+++++++|.-
T Consensus        79 ~~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~  117 (127)
T cd08373          79 TVSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQP  117 (127)
T ss_pred             EEEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEeC
Confidence                          5999975554445788887777753

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.53  E-value=7.3e-14  Score=114.17  Aligned_cols=95  Identities=23%  Similarity=0.376  Sum_probs=77.6

Q ss_pred             EEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCC--CceEEEEEEEcccCCCC--
Q 016987          266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKE--TQSLIFEVYIFLLFFPA--  341 (379)
Q Consensus       266 L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~--~~~L~i~V~D~d~~~~d--  341 (379)
                      |+|+|++|++|+..   +.+||||.+++++...++|+++++ .||.|||+|.|.+....  ...+.+.+||.+...++  
T Consensus         2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~   77 (117)
T cd08383           2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV   77 (117)
T ss_pred             eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence            78999999999976   789999999998755689999988 99999999999986532  35678888988766543  


Q ss_pred             ----------------cEEEcccCC-CCceeeEEEEEEEE
Q 016987          342 ----------------QWVPILNSE-YGAALSNMHLIYIY  364 (379)
Q Consensus       342 ----------------~w~~L~~~~-~g~~~g~i~l~~~~  364 (379)
                                      .|++|...+ .+...|++++.++|
T Consensus        78 ~g~v~l~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~  117 (117)
T cd08383          78 IGKVALSKLDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY  117 (117)
T ss_pred             EEEEEecCcCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence                            799997543 35668899988876

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.52  E-value=6.1e-14  Score=116.44  Aligned_cols=85  Identities=28%  Similarity=0.328  Sum_probs=72.9

Q ss_pred             ccccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecC--CCCce
Q 016987          254 DTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAED--KETQS  327 (379)
Q Consensus       254 d~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~--~~~~~  327 (379)
                      .++..|....+.|+|+|++|+||+..+..+.+||||++++.+    ..+++|++++++.||.|||+|.|.+..  .....
T Consensus         6 ~~~l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~   85 (127)
T cd04030           6 QLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRT   85 (127)
T ss_pred             EEEEEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCE
Confidence            345557788899999999999999999889999999999864    357899999999999999999999853  23568


Q ss_pred             EEEEEEEcccC
Q 016987          328 LIFEVYIFLLF  338 (379)
Q Consensus       328 L~i~V~D~d~~  338 (379)
                      |.++|||++.+
T Consensus        86 l~i~v~~~~~~   96 (127)
T cd04030          86 LDVAVKNSKSF   96 (127)
T ss_pred             EEEEEEECCcc
Confidence            99999999875

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.52  E-value=4.2e-14  Score=116.24  Aligned_cols=78  Identities=22%  Similarity=0.446  Sum_probs=66.7

Q ss_pred             cCCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecCC-CCceEEEEEEEc
Q 016987          261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDK-ETQSLIFEVYIF  335 (379)
Q Consensus       261 ~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~~-~~~~L~i~V~D~  335 (379)
                      ...+.|.|+|++|+||++++ .|.+||||++++.+    ..+++|++++++.||.|||+|.|.+... ....+.++|||+
T Consensus         9 ~~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~   87 (119)
T cd08685           9 GQNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNK   87 (119)
T ss_pred             EcCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECC
Confidence            36799999999999999998 78999999999975    2467899999999999999999998542 235689999999


Q ss_pred             ccCC
Q 016987          336 LLFF  339 (379)
Q Consensus       336 d~~~  339 (379)
                      |..+
T Consensus        88 ~~~~   91 (119)
T cd08685          88 LSKS   91 (119)
T ss_pred             CCCc
Confidence            8764

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.52  E-value=1.7e-13  Score=116.39  Aligned_cols=76  Identities=36%  Similarity=0.546  Sum_probs=70.2

Q ss_pred             CcEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC
Q 016987          263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA  341 (379)
Q Consensus       263 ~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d  341 (379)
                      .|.|+|+|++|++|+..+. +.+||||++++++ ++++|++++++.||.|||+|.|.+.++ ...+.++|||+|.+++|
T Consensus         1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~-~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~d   76 (145)
T cd04038           1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGN-QKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSKD   76 (145)
T ss_pred             CeEEEEEEEeeECCCCCCC-CCcCcEEEEEECC-EEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCCC
Confidence            3889999999999999887 8899999999987 689999999999999999999999876 77899999999999876

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.51  E-value=8.9e-14  Score=118.38  Aligned_cols=74  Identities=22%  Similarity=0.281  Sum_probs=62.2

Q ss_pred             EEEEEeecccccccccCCCCCcEEEEEEcCe----eeEeeeccCCCCCCeEeeEEEEEec---------------CCCCc
Q 016987          266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPL----FKVKTNVVDNNLNPVWNQTFELIAE---------------DKETQ  326 (379)
Q Consensus       266 L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~----~~~~T~v~~~tlnP~Wne~f~f~v~---------------~~~~~  326 (379)
                      |+|+|++|++|+.  ..|.+||||++++.+.    .+++|+++++++||.|||+|.|.+.               +....
T Consensus         2 L~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~   79 (148)
T cd04010           2 LSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL   79 (148)
T ss_pred             EEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence            7899999999998  4689999999999752    4679999999999999999999984               12235


Q ss_pred             eEEEEEEEcccCCCC
Q 016987          327 SLIFEVYIFLLFFPA  341 (379)
Q Consensus       327 ~L~i~V~D~d~~~~d  341 (379)
                      .|.++|||++.+++|
T Consensus        80 ~L~i~V~d~~~~~~d   94 (148)
T cd04010          80 ELRVDLWHASMGGGD   94 (148)
T ss_pred             EEEEEEEcCCCCCCC
Confidence            799999999987554

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.50  E-value=9.8e-14  Score=114.90  Aligned_cols=87  Identities=28%  Similarity=0.374  Sum_probs=73.3

Q ss_pred             cccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC--eeeEeeeccCCCCCCeEeeEEEEEecC---CCCceEE
Q 016987          255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIAED---KETQSLI  329 (379)
Q Consensus       255 ~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~--~~~~~T~v~~~tlnP~Wne~f~f~v~~---~~~~~L~  329 (379)
                      ++..|..+.+.|+|+|++|++|+..+..+.+||||++++.+  ..+.+|++++++.||.|||+|.|.+..   .....|.
T Consensus         7 ~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~   86 (125)
T cd08386           7 FSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLY   86 (125)
T ss_pred             EEEEECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEE
Confidence            45556788999999999999999999889999999999843  356899999999999999999997422   2356799


Q ss_pred             EEEEEcccCCCC
Q 016987          330 FEVYIFLLFFPA  341 (379)
Q Consensus       330 i~V~D~d~~~~d  341 (379)
                      ++|||+|.++++
T Consensus        87 ~~v~d~d~~~~~   98 (125)
T cd08386          87 LQVLDYDRFSRN   98 (125)
T ss_pred             EEEEeCCCCcCC
Confidence            999999987665

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.49  E-value=3.7e-13  Score=111.58  Aligned_cols=77  Identities=29%  Similarity=0.327  Sum_probs=67.3

Q ss_pred             EEEEEEeecccccccccCCCCCcEEEEEEcC--eeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC
Q 016987          265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA  341 (379)
Q Consensus       265 ~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~--~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d  341 (379)
                      .++|+|++|++|+..+..+.+||||++...+  ...++|+++++++||.|||+|.|.+.....+.|.++|||+|..++|
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~   80 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKH   80 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCC
Confidence            5799999999999999889999999998764  2468999999999999999999999775567899999999987554

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.49  E-value=1.1e-13  Score=114.69  Aligned_cols=87  Identities=24%  Similarity=0.270  Sum_probs=73.3

Q ss_pred             ccccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC--eeeEeeeccCCCCCCeEeeEEEEE-ecC--CCCceE
Q 016987          254 DTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELI-AED--KETQSL  328 (379)
Q Consensus       254 d~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~--~~~~~T~v~~~tlnP~Wne~f~f~-v~~--~~~~~L  328 (379)
                      .++..|....+.|.|+|++|+||++.+..|.+||||++.+.+  ..+++|+++++ .||+|||+|.|. +..  .....|
T Consensus         6 ~~sl~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L   84 (124)
T cd08389           6 DVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMAL   84 (124)
T ss_pred             EEEEEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEE
Confidence            345567788999999999999999999888899999988754  35789999887 999999999998 532  346789


Q ss_pred             EEEEEEcccCCCC
Q 016987          329 IFEVYIFLLFFPA  341 (379)
Q Consensus       329 ~i~V~D~d~~~~d  341 (379)
                      .++|||+|.++++
T Consensus        85 ~~~V~~~~~~~~~   97 (124)
T cd08389          85 RFRLYGVERMRKE   97 (124)
T ss_pred             EEEEEECCCcccC
Confidence            9999999988765

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.48  E-value=6.3e-14  Score=121.38  Aligned_cols=81  Identities=30%  Similarity=0.390  Sum_probs=69.4

Q ss_pred             cCCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEec---CCCCceEEEEEE
Q 016987          261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAE---DKETQSLIFEVY  333 (379)
Q Consensus       261 ~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~---~~~~~~L~i~V~  333 (379)
                      .+.|.|+|+|++|+||+..+..+.+||||++++.+    ..+++|++++++.||.|||+|.|.+.   +.....|.++||
T Consensus        24 ~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~  103 (162)
T cd04020          24 PSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVW  103 (162)
T ss_pred             CCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEE
Confidence            47899999999999999999889999999998842    35789999999999999999999853   223467999999


Q ss_pred             EcccCCCC
Q 016987          334 IFLLFFPA  341 (379)
Q Consensus       334 D~d~~~~d  341 (379)
                      |+|.+++|
T Consensus       104 d~d~~~~d  111 (162)
T cd04020         104 DHDKLSSN  111 (162)
T ss_pred             eCCCCCCC
Confidence            99988765

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.48  E-value=1.1e-13  Score=116.54  Aligned_cols=88  Identities=32%  Similarity=0.411  Sum_probs=74.6

Q ss_pred             ccccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecCC--CCce
Q 016987          254 DTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQS  327 (379)
Q Consensus       254 d~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~~--~~~~  327 (379)
                      .++..|.++.|.|+|+|++|++|+.++..|.+||||++++.+    ..+++|+++++++||.|||+|.|.+...  ....
T Consensus         5 ~~~l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~   84 (136)
T cd08402           5 CFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVH   84 (136)
T ss_pred             EEEeEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCE
Confidence            455667789999999999999999999889999999999853    2357899999999999999999998542  2347


Q ss_pred             EEEEEEEcccCCCC
Q 016987          328 LIFEVYIFLLFFPA  341 (379)
Q Consensus       328 L~i~V~D~d~~~~d  341 (379)
                      |.++|||+|.+++|
T Consensus        85 l~~~v~d~~~~~~~   98 (136)
T cd08402          85 LIVTVLDYDRIGKN   98 (136)
T ss_pred             EEEEEEeCCCCCCC
Confidence            99999999988765

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.48  E-value=1.2e-13  Score=114.35  Aligned_cols=77  Identities=34%  Similarity=0.519  Sum_probs=66.7

Q ss_pred             EEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccC-CCCCCeEeeEEEEEecCCC----CceEEEEEEEcccCC
Q 016987          265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVD-NNLNPVWNQTFELIAEDKE----TQSLIFEVYIFLLFF  339 (379)
Q Consensus       265 ~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~-~tlnP~Wne~f~f~v~~~~----~~~L~i~V~D~d~~~  339 (379)
                      +|+|+|++|++|+..+..+.+||||++++++..+++|++.. ++.||.|||+|.|.+.+..    ...|.++|||++.++
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~   80 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL   80 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence            47999999999999998899999999999875678898875 5899999999999997653    578999999999866


Q ss_pred             CC
Q 016987          340 PA  341 (379)
Q Consensus       340 ~d  341 (379)
                      +|
T Consensus        81 ~~   82 (125)
T cd04051          81 GD   82 (125)
T ss_pred             CC
Confidence            54

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.48  E-value=1.5e-13  Score=113.82  Aligned_cols=79  Identities=27%  Similarity=0.354  Sum_probs=69.4

Q ss_pred             cCCcEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecC-CCCceEEEEEEEcccCC
Q 016987          261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAED-KETQSLIFEVYIFLLFF  339 (379)
Q Consensus       261 ~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~-~~~~~L~i~V~D~d~~~  339 (379)
                      ...|.|+|+|++|++|+. +..+.+|||+++++++ .+++|+++++++||.|||+|.|.... ...+.|.++|||+|.++
T Consensus        25 ~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~-~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s  102 (127)
T cd04032          25 RGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGG-QEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGW  102 (127)
T ss_pred             CCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECC-ccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCC
Confidence            678999999999999984 6678899999999987 58999999999999999999997432 34678999999999987


Q ss_pred             CC
Q 016987          340 PA  341 (379)
Q Consensus       340 ~d  341 (379)
                      +|
T Consensus       103 ~d  104 (127)
T cd04032         103 DD  104 (127)
T ss_pred             CC
Confidence            76

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.48  E-value=3.7e-13  Score=110.46  Aligned_cols=72  Identities=21%  Similarity=0.303  Sum_probs=61.7

Q ss_pred             cEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC
Q 016987          264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA  341 (379)
Q Consensus       264 g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d  341 (379)
                      +.|.|+|++|++|+..+   ..||||.+.+++ ++.+|++.++ .||.|||+|.|.+.+. ...|.++|||+|.+++|
T Consensus         2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~-~k~kT~v~~~-~nP~WnE~F~F~~~~~-~~~L~v~V~dkd~~~DD   73 (127)
T cd08394           2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQN-VKSTTIAVRG-SQPCWEQDFMFEINRL-DLGLVIELWNKGLIWDT   73 (127)
T ss_pred             ceEEEEEEEeeCCCCCC---CCCCeEEEEECC-EEeEeeECCC-CCCceeeEEEEEEcCC-CCEEEEEEEeCCCcCCC
Confidence            67999999999997654   459999999998 7889998877 4999999999999875 45599999999977554

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.48  E-value=1.4e-13  Score=115.22  Aligned_cols=87  Identities=26%  Similarity=0.302  Sum_probs=74.5

Q ss_pred             cccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecCC--CCceE
Q 016987          255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSL  328 (379)
Q Consensus       255 ~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~~--~~~~L  328 (379)
                      ++..|....|.|.|+|++|++|+..+..|.+||||++++.+    ..+++|+++++++||.|||+|.|.+...  ....|
T Consensus         4 ~~l~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l   83 (133)
T cd08384           4 VSLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTL   83 (133)
T ss_pred             EEEEEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEE
Confidence            44557788999999999999999999889999999999864    2468999999999999999999998642  35689


Q ss_pred             EEEEEEcccCCCC
Q 016987          329 IFEVYIFLLFFPA  341 (379)
Q Consensus       329 ~i~V~D~d~~~~d  341 (379)
                      .++|||+|..++|
T Consensus        84 ~~~V~d~d~~~~~   96 (133)
T cd08384          84 EITVWDKDIGKSN   96 (133)
T ss_pred             EEEEEeCCCCCCc
Confidence            9999999987655

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.48  E-value=2.2e-13  Score=113.76  Aligned_cols=93  Identities=33%  Similarity=0.516  Sum_probs=80.1

Q ss_pred             CcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecCC-CCceEEEEEEEccc
Q 016987          263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDK-ETQSLIFEVYIFLL  337 (379)
Q Consensus       263 ~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~~-~~~~L~i~V~D~d~  337 (379)
                      .+.|+|+|++|++|+..+..+.+||||++.+.+    ...++|++++++.||.|||+|.|.+... ..+.|.++|||++.
T Consensus        12 ~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~   91 (131)
T cd04026          12 DNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDR   91 (131)
T ss_pred             CCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCC
Confidence            389999999999999988888999999999863    3578999999999999999999998653 24689999999998


Q ss_pred             CCCC-------------------cEEEcccCCCCcee
Q 016987          338 FFPA-------------------QWVPILNSEYGAAL  355 (379)
Q Consensus       338 ~~~d-------------------~w~~L~~~~~g~~~  355 (379)
                      +++|                   .||+|.++++|++.
T Consensus        92 ~~~~~~iG~~~~~l~~l~~~~~~~w~~L~~~~~~~~~  128 (131)
T cd04026          92 TTRNDFMGSLSFGVSELIKMPVDGWYKLLNQEEGEYY  128 (131)
T ss_pred             CCCcceeEEEEEeHHHhCcCccCceEECcCccccccc
Confidence            7654                   69999988888764

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.47  E-value=3e-13  Score=110.27  Aligned_cols=76  Identities=30%  Similarity=0.443  Sum_probs=67.5

Q ss_pred             EEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC
Q 016987          266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA  341 (379)
Q Consensus       266 L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d  341 (379)
                      |+|+|++|++|+..+..+.+||||++.+.+...++|+++.++.||.|||+|.|.+.+...+.+.++|||++.+++|
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~   76 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKD   76 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCC
Confidence            5799999999999988889999999999765668999999999999999999998765568899999999987655

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.47  E-value=2.3e-13  Score=116.35  Aligned_cols=77  Identities=32%  Similarity=0.484  Sum_probs=68.6

Q ss_pred             ccCCcEEEEEEeecccccccccCCCCCcEEEEEEcCe----------------------------eeEeeeccCCCCCCe
Q 016987          260 LKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL----------------------------FKVKTNVVDNNLNPV  311 (379)
Q Consensus       260 ~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~----------------------------~~~~T~v~~~tlnP~  311 (379)
                      .++.+.|+|+|++|++|.++|..|.+||||++.+.+.                            ..++|+++++++||.
T Consensus        24 ~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~  103 (153)
T cd08676          24 EPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPV  103 (153)
T ss_pred             CCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCc
Confidence            4789999999999999999999999999999998641                            237899999999999


Q ss_pred             EeeEEEEEecCCCCceEEEEEEEcc
Q 016987          312 WNQTFELIAEDKETQSLIFEVYIFL  336 (379)
Q Consensus       312 Wne~f~f~v~~~~~~~L~i~V~D~d  336 (379)
                      |||+|.|.+.+...+.|.++|||+|
T Consensus       104 WnE~F~f~v~~~~~~~L~i~V~D~d  128 (153)
T cd08676         104 WNETFRFEVEDVSNDQLHLDIWDHD  128 (153)
T ss_pred             cccEEEEEeccCCCCEEEEEEEecC
Confidence            9999999997766788999999986

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.47  E-value=1.6e-13  Score=115.35  Aligned_cols=87  Identities=25%  Similarity=0.405  Sum_probs=73.4

Q ss_pred             cccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecC--CCCceE
Q 016987          255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAED--KETQSL  328 (379)
Q Consensus       255 ~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~--~~~~~L  328 (379)
                      ++..|.+..|.|+|+|++|++|+..|..|.+||||++++.+    ..+++|+++++++||.|||+|.|.+..  .....|
T Consensus         5 ~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l   84 (135)
T cd08410           5 LSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSL   84 (135)
T ss_pred             EEEEECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEE
Confidence            45557788899999999999999999889999999999743    245789999999999999999999853  234479


Q ss_pred             EEEEEEcccCCCC
Q 016987          329 IFEVYIFLLFFPA  341 (379)
Q Consensus       329 ~i~V~D~d~~~~d  341 (379)
                      .++|||+|..++|
T Consensus        85 ~~~V~d~d~~~~~   97 (135)
T cd08410          85 VFTVYGHNVKSSN   97 (135)
T ss_pred             EEEEEeCCCCCCC
Confidence            9999999987665

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.47  E-value=1.9e-13  Score=115.03  Aligned_cols=87  Identities=31%  Similarity=0.343  Sum_probs=73.6

Q ss_pred             cccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecC--CCCceE
Q 016987          255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAED--KETQSL  328 (379)
Q Consensus       255 ~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~--~~~~~L  328 (379)
                      ++..|.+..+.|.|+|++|+||+..+..|.+||||++++.+    ..+++|++++++.||.|||+|.|.+..  .....|
T Consensus         6 ~sl~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l   85 (136)
T cd08405           6 LSLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTL   85 (136)
T ss_pred             EEEEEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEE
Confidence            45557788999999999999999999889999999999842    235789999999999999999998753  235689


Q ss_pred             EEEEEEcccCCCC
Q 016987          329 IFEVYIFLLFFPA  341 (379)
Q Consensus       329 ~i~V~D~d~~~~d  341 (379)
                      .++|||+|.+++|
T Consensus        86 ~~~v~d~~~~~~~   98 (136)
T cd08405          86 IITVMDKDRLSRN   98 (136)
T ss_pred             EEEEEECCCCCCC
Confidence            9999999988765

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.47  E-value=2.8e-13  Score=111.84  Aligned_cols=87  Identities=23%  Similarity=0.299  Sum_probs=73.1

Q ss_pred             cccccccCCcEEEEEEeecccccccc-cCCCCCcEEEEEEcC--eeeEeeeccCCCCCCeEeeEEEEEecCC--CCceEE
Q 016987          255 TSELELKPQGKVAVTIVKANNLKNME-MIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLI  329 (379)
Q Consensus       255 ~~~l~~~~~g~L~V~V~~A~~L~~~d-~~g~sdPyv~v~~~~--~~~~~T~v~~~tlnP~Wne~f~f~v~~~--~~~~L~  329 (379)
                      ++..|....+.|.|+|++|++|+..+ ..+.+||||++++.+  ...++|+++++++||.|||+|.|.+...  ....|.
T Consensus         5 ~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~   84 (123)
T cd08390           5 FSVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLR   84 (123)
T ss_pred             EEEEECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEE
Confidence            45557788999999999999999998 678899999999853  3467899999999999999999998542  245799


Q ss_pred             EEEEEcccCCCC
Q 016987          330 FEVYIFLLFFPA  341 (379)
Q Consensus       330 i~V~D~d~~~~d  341 (379)
                      ++|||++..+++
T Consensus        85 i~v~d~~~~~~~   96 (123)
T cd08390          85 LSVYDVDRFSRH   96 (123)
T ss_pred             EEEEECCcCCCC
Confidence            999999987654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.46  E-value=3.8e-13  Score=111.87  Aligned_cols=93  Identities=17%  Similarity=0.166  Sum_probs=75.7

Q ss_pred             cccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCC-CCeEeeEEEEEecCCC-CceE
Q 016987          255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNL-NPVWNQTFELIAEDKE-TQSL  328 (379)
Q Consensus       255 ~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tl-nP~Wne~f~f~v~~~~-~~~L  328 (379)
                      +|..|.+..|.|+|+|++|+||++.+..+.+||||++++..    ..+++|+++++++ ||.|||+|.|++.... +-.+
T Consensus         5 ~sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l   84 (135)
T cd08692           5 LGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQF   84 (135)
T ss_pred             EEeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEE
Confidence            56778899999999999999999876556779999998742    3578999999995 6999999999996532 3468


Q ss_pred             EEEEEEcccCCCC---cEEEcc
Q 016987          329 IFEVYIFLLFFPA---QWVPIL  347 (379)
Q Consensus       329 ~i~V~D~d~~~~d---~w~~L~  347 (379)
                      .++|||+|..+++   +++-|-
T Consensus        85 ~v~v~d~~~~~~n~~IG~v~lG  106 (135)
T cd08692          85 LIKLYSRSSVRRKHFLGQVWIS  106 (135)
T ss_pred             EEEEEeCCCCcCCceEEEEEEC
Confidence            8999999987776   566653

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.45  E-value=3e-13  Score=115.43  Aligned_cols=76  Identities=24%  Similarity=0.263  Sum_probs=65.5

Q ss_pred             EEEEEEeecccccccccCC--------------CCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCC-CCceEE
Q 016987          265 KVAVTIVKANNLKNMEMIG--------------KSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDK-ETQSLI  329 (379)
Q Consensus       265 ~L~V~V~~A~~L~~~d~~g--------------~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~-~~~~L~  329 (379)
                      .|.|+|++|++|+.+|..+              .+||||++.+++ .+.+|+++++++||+|||+|.|.+..+ ..+.+.
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g-~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~   79 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAG-QKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIK   79 (151)
T ss_pred             CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECC-EeeecceEcCCCCCCcceEEEEEeeCCCcCCEEE
Confidence            3789999999999988543              689999999998 578999999999999999999987543 356899


Q ss_pred             EEEEEcccCCCC
Q 016987          330 FEVYIFLLFFPA  341 (379)
Q Consensus       330 i~V~D~d~~~~d  341 (379)
                      ++|||+|..++|
T Consensus        80 ~~v~D~d~~~~d   91 (151)
T cd04018          80 IQIRDWDRVGND   91 (151)
T ss_pred             EEEEECCCCCCC
Confidence            999999998665

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PLN03008 Phospholipase D delta

Probab=99.45  E-value=4.3e-13  Score=138.63  Aligned_cols=103  Identities=26%  Similarity=0.447  Sum_probs=84.3

Q ss_pred             CCcEEEEEEeeccccccccc------------------------------------------CCCCCcEEEEEEcCeeeE
Q 016987          262 PQGKVAVTIVKANNLKNMEM------------------------------------------IGKSDPYAVVHIKPLFKV  299 (379)
Q Consensus       262 ~~g~L~V~V~~A~~L~~~d~------------------------------------------~g~sdPyv~v~~~~~~~~  299 (379)
                      -+|.|.++|.+|++|+++|.                                          .++|||||++.+++.+..
T Consensus        12 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~   91 (868)
T PLN03008         12 LHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLA   91 (868)
T ss_pred             eecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCccee
Confidence            48999999999999886332                                          236799999999876677


Q ss_pred             eeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC-------------------cEEEcccCCCCce--eeEE
Q 016987          300 KTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA-------------------QWVPILNSEYGAA--LSNM  358 (379)
Q Consensus       300 ~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d-------------------~w~~L~~~~~g~~--~g~i  358 (379)
                      ||+++++++||+|||+|.|.+.++ ...|.++|||+|.++.|                   .|++|.+......  .+.+
T Consensus        92 RTrVi~n~~NPvWNE~F~f~vah~-~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k~~~kl  170 (868)
T PLN03008         92 RTRVLKNSQEPLWDEKFNISIAHP-FAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAETAI  170 (868)
T ss_pred             eEEeCCCCCCCCcceeEEEEecCC-CceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCCCCCCCCcEE
Confidence            999999999999999999999885 56899999999999876                   7999986654433  3466


Q ss_pred             EEEEEEE
Q 016987          359 HLIYIYK  365 (379)
Q Consensus       359 ~l~~~~~  365 (379)
                      +++++|+
T Consensus       171 ~v~lqf~  177 (868)
T PLN03008        171 FIDMKFT  177 (868)
T ss_pred             EEEEEEE
Confidence            6666666

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.44  E-value=4.1e-13  Score=112.56  Aligned_cols=85  Identities=27%  Similarity=0.399  Sum_probs=72.7

Q ss_pred             cccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC------eeeEeeeccCCCCCCeEeeEEEEEecCC----CCc
Q 016987          257 ELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP------LFKVKTNVVDNNLNPVWNQTFELIAEDK----ETQ  326 (379)
Q Consensus       257 ~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~------~~~~~T~v~~~tlnP~Wne~f~f~v~~~----~~~  326 (379)
                      ..|....+.|+|+|++|++|+..+..|.+||||++++.+      ..+++|+++++++||.|||+|.|.+...    ...
T Consensus         9 l~y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~   88 (133)
T cd04009           9 AYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGA   88 (133)
T ss_pred             EEEcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCC
Confidence            335567889999999999999998889999999999863      2478999999999999999999998642    356


Q ss_pred             eEEEEEEEcccCCCC
Q 016987          327 SLIFEVYIFLLFFPA  341 (379)
Q Consensus       327 ~L~i~V~D~d~~~~d  341 (379)
                      .|.++|||+|.+++|
T Consensus        89 ~l~~~V~d~d~~~~d  103 (133)
T cd04009          89 LLLFTVKDYDLLGSN  103 (133)
T ss_pred             EEEEEEEecCCCCCC
Confidence            899999999988765

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.44  E-value=4.8e-13  Score=110.77  Aligned_cols=77  Identities=32%  Similarity=0.404  Sum_probs=67.4

Q ss_pred             EEEEEEeecccccccccCCCCCcEEEEEEcCee-eEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC
Q 016987          265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLF-KVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA  341 (379)
Q Consensus       265 ~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~-~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d  341 (379)
                      +|+|+|++|++|+..|..|.+||||++++++.. ..+|+++++++||.|||+|.|.+..+..+.|.++|||+|.+++|
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~d   78 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSD   78 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCC
Confidence            479999999999999988999999999998732 35788888999999999999998766678899999999987655

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.44  E-value=8.5e-13  Score=109.16  Aligned_cols=77  Identities=26%  Similarity=0.509  Sum_probs=67.8

Q ss_pred             cEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCC-CCCCeEeeEEEEEecCC---CCceEEEEEEEcccCC
Q 016987          264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDN-NLNPVWNQTFELIAEDK---ETQSLIFEVYIFLLFF  339 (379)
Q Consensus       264 g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~-tlnP~Wne~f~f~v~~~---~~~~L~i~V~D~d~~~  339 (379)
                      |.|+|+|++|++|+..+..+.+||||++++++ ..++|++.++ +.||.|||+|.|.+...   ..+.|.++|||++.++
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~-~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~   79 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRT-QERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFS   79 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEECC-EeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCC
Confidence            78999999999999999889999999999987 5678888774 89999999999999765   2578999999999886


Q ss_pred             CC
Q 016987          340 PA  341 (379)
Q Consensus       340 ~d  341 (379)
                      +|
T Consensus        80 ~d   81 (124)
T cd04049          80 DD   81 (124)
T ss_pred             CC
Confidence            65

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.43  E-value=3.9e-13  Score=112.78  Aligned_cols=87  Identities=36%  Similarity=0.436  Sum_probs=73.9

Q ss_pred             cccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecCC--CCceE
Q 016987          255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSL  328 (379)
Q Consensus       255 ~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~~--~~~~L  328 (379)
                      ++..|.+..|.|+|+|++|++|++++..|.+||||++++.+    ..+++|+++++++||.|||+|.|.+...  ....|
T Consensus         5 ~~~~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l   84 (134)
T cd08403           5 FSLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSL   84 (134)
T ss_pred             EEEEEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEE
Confidence            45567788999999999999999999999999999999853    2367899999999999999999987532  23469


Q ss_pred             EEEEEEcccCCCC
Q 016987          329 IFEVYIFLLFFPA  341 (379)
Q Consensus       329 ~i~V~D~d~~~~d  341 (379)
                      .++|||+|.+++|
T Consensus        85 ~~~v~d~~~~~~~   97 (134)
T cd08403          85 IIAVVDYDRVGHN   97 (134)
T ss_pred             EEEEEECCCCCCC
Confidence            9999999998776

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.43  E-value=1.7e-12  Score=107.59  Aligned_cols=75  Identities=27%  Similarity=0.408  Sum_probs=64.2

Q ss_pred             cEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC
Q 016987          264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA  341 (379)
Q Consensus       264 g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d  341 (379)
                      ..|+|+|.+|+ |...+..+.+||||++++++...++|++++++.||.|||+|.|.+..  .+.|.++|||++..++|
T Consensus         2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~   76 (125)
T cd04021           2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKAD   76 (125)
T ss_pred             ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCC
Confidence            36899999998 55555578899999999987447999999999999999999999864  57899999999998765

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.42  E-value=6.8e-13  Score=111.79  Aligned_cols=87  Identities=21%  Similarity=0.243  Sum_probs=73.5

Q ss_pred             ccccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcCe----eeEeeeccCCCCCCeEeeEEEEEecC--CCCce
Q 016987          254 DTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL----FKVKTNVVDNNLNPVWNQTFELIAED--KETQS  327 (379)
Q Consensus       254 d~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~----~~~~T~v~~~tlnP~Wne~f~f~v~~--~~~~~  327 (379)
                      .++..|.+..+.|.|+|++|+||+..+ .+.+||||++++.+.    .+++|++++++.||.|||+|.|.+..  .....
T Consensus         5 ~~sl~y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~   83 (137)
T cd08409           5 QISLTYNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTAS   83 (137)
T ss_pred             EEEEEECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccE
Confidence            345567788999999999999999988 788999999998642    36789999999999999999999853  34568


Q ss_pred             EEEEEEEcccCCCC
Q 016987          328 LIFEVYIFLLFFPA  341 (379)
Q Consensus       328 L~i~V~D~d~~~~d  341 (379)
                      |.++|||++..+++
T Consensus        84 L~~~V~~~~~~~~~   97 (137)
T cd08409          84 LSLSVMQSGGVRKS   97 (137)
T ss_pred             EEEEEEeCCCCCCc
Confidence            99999999987665

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.42  E-value=9.8e-13  Score=106.66  Aligned_cols=74  Identities=22%  Similarity=0.221  Sum_probs=63.8

Q ss_pred             CcEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCC----CceEEEEEEEcccC
Q 016987          263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKE----TQSLIFEVYIFLLF  338 (379)
Q Consensus       263 ~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~----~~~L~i~V~D~d~~  338 (379)
                      .-.|+|+|++|++|+    .|.+||||++++++ ++++|++++++.||.|||+|.|.+..+.    ...|.++|||++.+
T Consensus         3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~-~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~   77 (111)
T cd04011           3 DFQVRVRVIEARQLV----GGNIDPVVKVEVGG-QKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL   77 (111)
T ss_pred             cEEEEEEEEEcccCC----CCCCCCEEEEEECC-EeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc
Confidence            446899999999998    47899999999997 6789999999999999999999975432    46799999999987


Q ss_pred             CCC
Q 016987          339 FPA  341 (379)
Q Consensus       339 ~~d  341 (379)
                      ++|
T Consensus        78 ~~~   80 (111)
T cd04011          78 RSD   80 (111)
T ss_pred             ccC
Confidence            664

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.42  E-value=6.8e-13  Score=111.63  Aligned_cols=85  Identities=28%  Similarity=0.340  Sum_probs=71.9

Q ss_pred             cccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecCC--CCceEEE
Q 016987          257 ELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLIF  330 (379)
Q Consensus       257 ~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~~--~~~~L~i  330 (379)
                      ..|....+.|.|+|++|++|+..|..|.+||||++++.+    ..+++|+++++++||.|||+|.|.+...  ....|.+
T Consensus         8 l~y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~   87 (136)
T cd08404           8 LCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEF   87 (136)
T ss_pred             EEEeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEE
Confidence            345677899999999999999999889999999999853    1357899999999999999999998542  3457899


Q ss_pred             EEEEcccCCCC
Q 016987          331 EVYIFLLFFPA  341 (379)
Q Consensus       331 ~V~D~d~~~~d  341 (379)
                      +|||+|.++++
T Consensus        88 ~v~d~d~~~~~   98 (136)
T cd08404          88 LVLDSDRVTKN   98 (136)
T ss_pred             EEEECCCCCCC
Confidence            99999988765

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.41  E-value=1.7e-12  Score=105.26  Aligned_cols=81  Identities=21%  Similarity=0.340  Sum_probs=66.9

Q ss_pred             cCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC-------------------
Q 016987          281 MIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA-------------------  341 (379)
Q Consensus       281 ~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d-------------------  341 (379)
                      .+|.+||||.+++++...++|++++++.||.|||+|.|.+.+...+.|.++|||++.++.+                   
T Consensus         9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~~   88 (111)
T cd04052           9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSVG   88 (111)
T ss_pred             cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhcc
Confidence            4688999999999875678999999999999999999999876667899999999987332                   


Q ss_pred             -cEEEcccCCCCceeeEEEEEEEEE
Q 016987          342 -QWVPILNSEYGAALSNMHLIYIYK  365 (379)
Q Consensus       342 -~w~~L~~~~~g~~~g~i~l~~~~~  365 (379)
                       .|++|.+    ...|.++++++|+
T Consensus        89 ~~w~~L~~----~~~G~i~~~~~~~  109 (111)
T cd04052          89 QQWFPLSG----NGQGRIRISALWK  109 (111)
T ss_pred             ceeEECCC----CCCCEEEEEEEEe
Confidence             7999964    3467887776664

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.41  E-value=9.1e-13  Score=130.48  Aligned_cols=113  Identities=27%  Similarity=0.316  Sum_probs=93.7

Q ss_pred             cccccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC--eeeEeeeccCCCCCCeEeeEEEEEecC--CCCceE
Q 016987          253 VDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIAED--KETQSL  328 (379)
Q Consensus       253 ~d~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~--~~~~~T~v~~~tlnP~Wne~f~f~v~~--~~~~~L  328 (379)
                      +.++..|+.....|.|+|++|++|+.+|..|.+||||++++.+  ..+.+|++.++++||.|||+|.|.+..  ...+.|
T Consensus       156 l~fsl~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L  235 (421)
T KOG1028|consen  156 LQFSLQYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVL  235 (421)
T ss_pred             EEEEEEecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEE
Confidence            3456668889999999999999999999767899999999986  357899999999999999999999642  357889


Q ss_pred             EEEEEEcccCCCC--------------------cEEEcccCC--CCceeeEEEEEEEEE
Q 016987          329 IFEVYIFLLFFPA--------------------QWVPILNSE--YGAALSNMHLIYIYK  365 (379)
Q Consensus       329 ~i~V~D~d~~~~d--------------------~w~~L~~~~--~g~~~g~i~l~~~~~  365 (379)
                      .++|||+|+|+++                    .|.++....  ..+..|++.++++|.
T Consensus       236 ~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~  294 (421)
T KOG1028|consen  236 HLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYL  294 (421)
T ss_pred             EEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEee
Confidence            9999999999886                    399987531  222237999988887

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.40  E-value=1.2e-12  Score=110.25  Aligned_cols=75  Identities=20%  Similarity=0.265  Sum_probs=65.1

Q ss_pred             EEEEEeecccccccccCCCCCcEEEEEEcC---eeeEeeeccCCCCCCeEeeEEEEEecCC---------------CCce
Q 016987          266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKP---LFKVKTNVVDNNLNPVWNQTFELIAEDK---------------ETQS  327 (379)
Q Consensus       266 L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~---~~~~~T~v~~~tlnP~Wne~f~f~v~~~---------------~~~~  327 (379)
                      |+|+|++|++|+.+ ..|.+|||++++++.   ..+++|++++++.||.|||+|.|.+...               ....
T Consensus         1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~   79 (137)
T cd08675           1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE   79 (137)
T ss_pred             CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence            57999999999988 778999999999983   4689999999999999999999998654               4568


Q ss_pred             EEEEEEEcccCCCC
Q 016987          328 LIFEVYIFLLFFPA  341 (379)
Q Consensus       328 L~i~V~D~d~~~~d  341 (379)
                      +.++|||++.++++
T Consensus        80 l~i~V~d~~~~~~~   93 (137)
T cd08675          80 LRVELWHASMVSGD   93 (137)
T ss_pred             EEEEEEcCCcCcCC
Confidence            99999999987554

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.39  E-value=3.3e-12  Score=103.52  Aligned_cols=63  Identities=27%  Similarity=0.464  Sum_probs=55.6

Q ss_pred             EEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEc
Q 016987          266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIF  335 (379)
Q Consensus       266 L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~  335 (379)
                      |.|+|.+|+||+     +.+||||++.+.+    ..+.+|+++++|+||+|||+|+|.+..  .+.|.+.|||+
T Consensus         1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~--s~~L~~~v~d~   67 (118)
T cd08686           1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG--SQTLRILCYEK   67 (118)
T ss_pred             CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC--CCEEEEEEEEc
Confidence            579999999995     5689999998864    246899999999999999999999864  67999999998

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.37  E-value=6.4e-12  Score=107.37  Aligned_cols=76  Identities=21%  Similarity=0.219  Sum_probs=59.5

Q ss_pred             cEEEEEEeecccccccccCCCCCcEEEEEE----cCeeeEeeeccCCCCCCeEeeEEEEEecCC--------CCceEEEE
Q 016987          264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHI----KPLFKVKTNVVDNNLNPVWNQTFELIAEDK--------ETQSLIFE  331 (379)
Q Consensus       264 g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~----~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~--------~~~~L~i~  331 (379)
                      |.|+|....+.+++..+..+.+||||++++    ....+.+|+++++|+||+|||+|.|.+...        ....|.++
T Consensus         4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~   83 (155)
T cd08690           4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE   83 (155)
T ss_pred             eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence            444444444444778777788999999987    234689999999999999999999998543        24579999


Q ss_pred             EEEcccCC
Q 016987          332 VYIFLLFF  339 (379)
Q Consensus       332 V~D~d~~~  339 (379)
                      |||++.+.
T Consensus        84 V~d~~~f~   91 (155)
T cd08690          84 VYHKGGFL   91 (155)
T ss_pred             EEeCCCcc
Confidence            99999863

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.35  E-value=1.4e-11  Score=104.18  Aligned_cols=101  Identities=12%  Similarity=0.203  Sum_probs=77.5

Q ss_pred             cCCcEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEccc-CC
Q 016987          261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLL-FF  339 (379)
Q Consensus       261 ~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~-~~  339 (379)
                      +....|.|.|.+|++|+.++     +|||.+.+++....||+++.++.||.|+|+|.|..... ...+.+.||+.+. .+
T Consensus         8 R~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~~~   81 (146)
T cd04013           8 RTENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDKKK   81 (146)
T ss_pred             EEEEEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCccc
Confidence            44678999999999998754     89999999996668999999999999999999976543 4679999986553 21


Q ss_pred             ---CC--------------------cEEEcccCCCCc---------eeeEEEEEEEEEEe
Q 016987          340 ---PA--------------------QWVPILNSEYGA---------ALSNMHLIYIYKYL  367 (379)
Q Consensus       340 ---~d--------------------~w~~L~~~~~g~---------~~g~i~l~~~~~~~  367 (379)
                         +|                    .||||.+.+.+.         ..+.++++++|.-.
T Consensus        82 ~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~  141 (146)
T cd04013          82 KKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST  141 (146)
T ss_pred             cccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence               22                    899998665442         22467777766643

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.35  E-value=9.5e-12  Score=103.20  Aligned_cols=100  Identities=33%  Similarity=0.358  Sum_probs=75.6

Q ss_pred             EEEEEEeecccccccc--cCCCCCcEEEEEEcC-----eeeEeeeccCCCC-CCeEeeEEEEEecCCCCceEEEEEEEcc
Q 016987          265 KVAVTIVKANNLKNME--MIGKSDPYAVVHIKP-----LFKVKTNVVDNNL-NPVWNQTFELIAEDKETQSLIFEVYIFL  336 (379)
Q Consensus       265 ~L~V~V~~A~~L~~~d--~~g~sdPyv~v~~~~-----~~~~~T~v~~~tl-nP~Wne~f~f~v~~~~~~~L~i~V~D~d  336 (379)
                      .|+|+|++|++|+..+  ..+.+||||++++..     ..+++|+++.++. ||.|||+|.|.+..+....|.++|||++
T Consensus         3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~   82 (128)
T cd00275           3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED   82 (128)
T ss_pred             EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence            5899999999999888  578899999999842     2568999887765 9999999999987665567999999999


Q ss_pred             cCCCC----------------cEEEcccCCCC-ceeeEEEEEEEE
Q 016987          337 LFFPA----------------QWVPILNSEYG-AALSNMHLIYIY  364 (379)
Q Consensus       337 ~~~~d----------------~w~~L~~~~~g-~~~g~i~l~~~~  364 (379)
                      ..+.+                .|++|.+.... ...|.+.+.+++
T Consensus        83 ~~~~~~iG~~~~~l~~l~~g~~~~~l~~~~~~~~~~~~l~v~~~~  127 (128)
T cd00275          83 SGDDDFLGQACLPLDSLRQGYRHVPLLDSKGEPLELSTLFVHIDI  127 (128)
T ss_pred             CCCCcEeEEEEEEhHHhcCceEEEEecCCCCCCCcceeEEEEEEE
Confidence            87222                67888644322 234555555443

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.35  E-value=1.6e-11  Score=103.16  Aligned_cols=71  Identities=31%  Similarity=0.496  Sum_probs=60.8

Q ss_pred             EEEEEEeecccccccccCCCCCcEEEEEEcCe------------eeEeeeccCCCCCCeE-eeEEEEEecCCCCceEEEE
Q 016987          265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL------------FKVKTNVVDNNLNPVW-NQTFELIAEDKETQSLIFE  331 (379)
Q Consensus       265 ~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~------------~~~~T~v~~~tlnP~W-ne~f~f~v~~~~~~~L~i~  331 (379)
                      +..|++++|++|+ ++..|++|||+++++.+.            ++++|+++++++||.| ||+|.|.+..  .+.|.++
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~--~~~L~v~   78 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP--TDVLEIE   78 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC--CCEEEEE
Confidence            3578999999998 777899999999998541            3689999999999999 9999999853  4689999


Q ss_pred             EEEcccC
Q 016987          332 VYIFLLF  338 (379)
Q Consensus       332 V~D~d~~  338 (379)
                      |||++..
T Consensus        79 V~D~~~~   85 (137)
T cd08691          79 VKDKFAK   85 (137)
T ss_pred             EEecCCC
Confidence            9998654

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.35  E-value=2.3e-12  Score=144.56  Aligned_cols=100  Identities=18%  Similarity=0.224  Sum_probs=82.8

Q ss_pred             ccCCcEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCC-CceEEEEEEEcccC
Q 016987          260 LKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKE-TQSLIFEVYIFLLF  338 (379)
Q Consensus       260 ~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~-~~~L~i~V~D~d~~  338 (379)
                      ..-.|.|+|+|++|+||.  +..|.+||||++.++++.+.||++++++.||+|||.|.|.+.++. ++++.++|||+|.|
T Consensus      1976 ~~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f 2053 (2102)
T PLN03200       1976 QCLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTF 2053 (2102)
T ss_pred             hhCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCcc
Confidence            356899999999999998  447899999999999866889999999999999999999887764 46799999999999


Q ss_pred             CCC-------------------cEEEcccCCCCceeeE---EEEEEE
Q 016987          339 FPA-------------------QWVPILNSEYGAALSN---MHLIYI  363 (379)
Q Consensus       339 ~~d-------------------~w~~L~~~~~g~~~g~---i~l~~~  363 (379)
                      ++|                   +||+|.+  +|++.|.   +.+.++
T Consensus      2054 ~kd~~G~~~i~l~~vv~~~~~~~~~~L~~--~~~k~G~~~~~~~e~~ 2098 (2102)
T PLN03200       2054 GKSSLGKVTIQIDRVVMEGTYSGEYSLNP--ESNKDGSSRTLEIEFQ 2098 (2102)
T ss_pred             CCCCCceEEEEHHHHhcCceeeeeeecCc--ccccCCCcceEEEEEE
Confidence            876                   8999963  3444444   555443

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.32  E-value=5.5e-12  Score=105.48  Aligned_cols=87  Identities=30%  Similarity=0.297  Sum_probs=72.9

Q ss_pred             cccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcCe----eeEeeeccCCCCCCeEeeEEEEEecCCC--CceE
Q 016987          255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL----FKVKTNVVDNNLNPVWNQTFELIAEDKE--TQSL  328 (379)
Q Consensus       255 ~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~----~~~~T~v~~~tlnP~Wne~f~f~v~~~~--~~~L  328 (379)
                      ++..|.+..+.|.|+|++|++|+..+..+.+||||++++.+.    .+++|+++.++.||.|||+|.|.+....  ...|
T Consensus         5 ~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l   84 (134)
T cd00276           5 LSLSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSL   84 (134)
T ss_pred             EEEEeeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEE
Confidence            344466778999999999999999988889999999998652    3679999999999999999999986532  5789


Q ss_pred             EEEEEEcccCCCC
Q 016987          329 IFEVYIFLLFFPA  341 (379)
Q Consensus       329 ~i~V~D~d~~~~d  341 (379)
                      .++|||++.++++
T Consensus        85 ~~~v~d~~~~~~~   97 (134)
T cd00276          85 VITVVDKDSVGRN   97 (134)
T ss_pred             EEEEEecCCCCCC
Confidence            9999999976554

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.30  E-value=1.3e-11  Score=101.99  Aligned_cols=84  Identities=27%  Similarity=0.352  Sum_probs=70.4

Q ss_pred             cccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecC---CCCce
Q 016987          255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAED---KETQS  327 (379)
Q Consensus       255 ~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~---~~~~~  327 (379)
                      ++..|++..+.|+|+|++|++|++.+..+.+||||++++.+    ...++|++++++.||.|||+|.|....   .....
T Consensus         6 ~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~   85 (123)
T cd04035           6 FTLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKT   85 (123)
T ss_pred             EEEEEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCE
Confidence            44557778899999999999999998888999999999843    246899999999999999999986322   23468


Q ss_pred             EEEEEEEcccC
Q 016987          328 LIFEVYIFLLF  338 (379)
Q Consensus       328 L~i~V~D~d~~  338 (379)
                      +.++|||++.+
T Consensus        86 l~~~v~d~~~~   96 (123)
T cd04035          86 LRLLVLDEDRF   96 (123)
T ss_pred             EEEEEEEcCCc
Confidence            99999999887

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1

Probab=99.28  E-value=2.7e-11  Score=94.52  Aligned_cols=85  Identities=25%  Similarity=0.403  Sum_probs=72.5

Q ss_pred             HHHHHhHchh-hH-HHHHHHHHHhHHHHHHh-cCCCCcceEEEeEEecCCCCCeeeeeEEEec-CCCeEEEEEEEEEcCC
Q 016987           74 NKELSKLWPF-VA-DAAELVIKESVEPLLEE-YRPPGITSLKFSKLSLGNVAPKIEGIRVQSL-KQGQITMDIDFRWGGD  149 (379)
Q Consensus        74 N~~l~~~Wp~-~~-~~~~~~i~~~l~~~l~~-~~p~~~~~i~~~~~~lG~~pP~i~~ir~~~~-~~~~~~ld~~~~~~g~  149 (379)
                      |.++++++-. .+ ++..+.+++.++..|++ .+|+|+++++++++++|+.||.|+++|+.+. .++++.+|+|+.|.|+
T Consensus         1 N~ll~R~f~~~~~t~~~~~~i~~~L~~kL~~i~~P~fl~~i~v~~~~lG~~~P~i~~~~~~~~~~~g~~~~~~dv~Y~G~   80 (91)
T PF10296_consen    1 NALLGRLFFDFRRTEAFRDKIKEKLQKKLNKIKLPSFLDEISVTELDLGDSPPIISNVRIPDLDPDGELWIEFDVSYSGG   80 (91)
T ss_pred             ChHHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCCccCcEEEEEEECCCCCCEEEeccccccCCCCCEEEEEEEEEcCC
Confidence            6677776543 33 47889999999999998 4699999999999999999999999999864 4566999999999999


Q ss_pred             CcEEEEEEe
Q 016987          150 PSIILGVEA  158 (379)
Q Consensus       150 ~~i~l~~~~  158 (379)
                      +.++++++.
T Consensus        81 ~~l~l~t~l   89 (91)
T PF10296_consen   81 FSLTLETKL   89 (91)
T ss_pred             eEEEEEEEE
Confidence            999888765

These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.28  E-value=1.3e-11  Score=94.08  Aligned_cols=76  Identities=41%  Similarity=0.542  Sum_probs=66.7

Q ss_pred             EEEEEeecccccccccCCCCCcEEEEEEcCe--eeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC
Q 016987          266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPL--FKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA  341 (379)
Q Consensus       266 L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~--~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d  341 (379)
                      |+|+|.+|++|+..+..+..|||+++.+.+.  ..++|+++.++.+|.|+|+|.|.+.....+.|.++|||++.+++|
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~   78 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKD   78 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSE
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCC
Confidence            7899999999999888889999999999763  359999999999999999999998766667799999999887643

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.28  E-value=1.4e-11  Score=101.37  Aligned_cols=72  Identities=35%  Similarity=0.402  Sum_probs=62.0

Q ss_pred             EeecccccccccCCCCCcEEEEEEcCee------eEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEccc----CC
Q 016987          270 IVKANNLKNMEMIGKSDPYAVVHIKPLF------KVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLL----FF  339 (379)
Q Consensus       270 V~~A~~L~~~d~~g~sdPyv~v~~~~~~------~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~----~~  339 (379)
                      .++|++|+..+..|++||||++++.+..      .++|+++++++||.|||+|.|.+.....+.+.++|||+|.    .+
T Consensus         6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~   85 (120)
T cd04048           6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS   85 (120)
T ss_pred             EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence            4789999999988999999999997632      5899999999999999999998754456789999999997    66


Q ss_pred             CC
Q 016987          340 PA  341 (379)
Q Consensus       340 ~d  341 (379)
                      +|
T Consensus        86 ~~   87 (120)
T cd04048          86 DH   87 (120)
T ss_pred             CC
Confidence            65

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.19  E-value=2.1e-11  Score=120.65  Aligned_cols=104  Identities=23%  Similarity=0.363  Sum_probs=86.8

Q ss_pred             CCcEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCC-
Q 016987          262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFP-  340 (379)
Q Consensus       262 ~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~-  340 (379)
                      =...++++|+.|++|..+|..|+||||+...+++ .++||+++..++||+|||.|.|.+++. ...+++.|||+|..-+ 
T Consensus       293 wsakitltvlcaqgl~akdktg~sdpyvt~qv~k-tkrrtrti~~~lnpvw~ekfhfechns-tdrikvrvwded~dlks  370 (1283)
T KOG1011|consen  293 WSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGK-TKRRTRTIHQELNPVWNEKFHFECHNS-TDRIKVRVWDEDNDLKS  370 (1283)
T ss_pred             cceeeEEeeeecccceecccCCCCCCcEEEeecc-cchhhHhhhhccchhhhhheeeeecCC-CceeEEEEecCcccHHH
Confidence            3567899999999999999999999999999998 689999999999999999999999985 6789999999986411 


Q ss_pred             ----------------------------CcEEEcccC-CCCceeeEEEEEEEEEEe
Q 016987          341 ----------------------------AQWVPILNS-EYGAALSNMHLIYIYKYL  367 (379)
Q Consensus       341 ----------------------------d~w~~L~~~-~~g~~~g~i~l~~~~~~~  367 (379)
                                                  |-||.|... .+....|.|+|.++...+
T Consensus       371 klrqkl~resddflgqtvievrtlsgemdvwynlekrtdksavsgairlhisveik  426 (1283)
T KOG1011|consen  371 KLRQKLTRESDDFLGQTVIEVRTLSGEMDVWYNLEKRTDKSAVSGAIRLHISVEIK  426 (1283)
T ss_pred             HHHHHhhhcccccccceeEEEEecccchhhhcchhhccchhhccceEEEEEEEEEc
Confidence                                        169999632 234457888888876644

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.19  E-value=1.2e-10  Score=94.05  Aligned_cols=73  Identities=25%  Similarity=0.426  Sum_probs=60.3

Q ss_pred             EEeecccccccccCCCCCcEEEEEEcCe-----eeEeeeccCCCCCCeEeeEEEEEecCC----CCceEEEEEEEcccCC
Q 016987          269 TIVKANNLKNMEMIGKSDPYAVVHIKPL-----FKVKTNVVDNNLNPVWNQTFELIAEDK----ETQSLIFEVYIFLLFF  339 (379)
Q Consensus       269 ~V~~A~~L~~~d~~g~sdPyv~v~~~~~-----~~~~T~v~~~tlnP~Wne~f~f~v~~~----~~~~L~i~V~D~d~~~  339 (379)
                      -.++|++|+..|..|.+|||+++++.+.     ..++|+++++++||.|| +|.|.+.+.    ..+.|.++|||+|.++
T Consensus         5 ~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~   83 (110)
T cd04047           5 LQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSG   83 (110)
T ss_pred             EEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCC
Confidence            3569999999999999999999998642     35899999999999999 688876432    1578999999999987


Q ss_pred             CCc
Q 016987          340 PAQ  342 (379)
Q Consensus       340 ~d~  342 (379)
                      +|+
T Consensus        84 ~d~   86 (110)
T cd04047          84 KHD   86 (110)
T ss_pred             CCc
Confidence            763

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.03  E-value=7.8e-10  Score=109.70  Aligned_cols=87  Identities=36%  Similarity=0.426  Sum_probs=75.9

Q ss_pred             cccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecC--CCCceE
Q 016987          255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAED--KETQSL  328 (379)
Q Consensus       255 ~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~--~~~~~L  328 (379)
                      ++..|.++.|.|+|.|++|+||+.++..+.+||||++++..    ..+++|.+.++++||.|||+|.|.+..  .....+
T Consensus       289 ~sL~Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l  368 (421)
T KOG1028|consen  289 LSLCYLPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSL  368 (421)
T ss_pred             EEEEeecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEE
Confidence            45568889999999999999999999999999999999743    457899999999999999999998863  334578


Q ss_pred             EEEEEEcccCCCC
Q 016987          329 IFEVYIFLLFFPA  341 (379)
Q Consensus       329 ~i~V~D~d~~~~d  341 (379)
                      .++|||+|.+++.
T Consensus       369 ~l~V~d~d~~~~~  381 (421)
T KOG1028|consen  369 ELTVWDHDTLGSN  381 (421)
T ss_pred             EEEEEEccccccc
Confidence            9999999999887

>PLN02223 phosphoinositide phospholipase C

Probab=98.99  E-value=3.9e-09  Score=105.45  Aligned_cols=102  Identities=25%  Similarity=0.341  Sum_probs=81.6

Q ss_pred             cEEEEEEeeccccccc-----ccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEE
Q 016987          264 GKVAVTIVKANNLKNM-----EMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYI  334 (379)
Q Consensus       264 g~L~V~V~~A~~L~~~-----d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D  334 (379)
                      ..|.|+|+.|++++..     +.....||||++.+.+    ..+++|++..|+.||.|||+|.|.+..++-..|.++|+|
T Consensus       409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D  488 (537)
T PLN02223        409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYD  488 (537)
T ss_pred             eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEe
Confidence            5799999999987511     2234579999999854    245678888889999999999999988877789999999


Q ss_pred             cccCCCC-----------------cEEEcccCCCCceeeEEEEEEEEEE
Q 016987          335 FLLFFPA-----------------QWVPILNSEYGAALSNMHLIYIYKY  366 (379)
Q Consensus       335 ~d~~~~d-----------------~w~~L~~~~~g~~~g~i~l~~~~~~  366 (379)
                      +|..++|                 .+++|. .+.|+.....+|.++|++
T Consensus       489 ~D~~~~ddfiGQ~~LPv~~Lr~GyR~VpL~-~~~g~~l~~~~Ll~~f~~  536 (537)
T PLN02223        489 YEVSTADAFCGQTCLPVSELIEGIRAVPLY-DERGKACSSTMLLTRFKW  536 (537)
T ss_pred             cCCCCCCcEEEEEecchHHhcCCceeEecc-CCCcCCCCCceEEEEEEe
Confidence            9987665                 789997 456777677888888876

>PLN02270 phospholipase D alpha

Probab=98.98  E-value=3.1e-09  Score=110.36  Aligned_cols=107  Identities=21%  Similarity=0.360  Sum_probs=87.6

Q ss_pred             CCcEEEEEEeecccccccc------------------cCCCCCcEEEEEEcCeeeEeeeccCCC-CCCeEeeEEEEEecC
Q 016987          262 PQGKVAVTIVKANNLKNME------------------MIGKSDPYAVVHIKPLFKVKTNVVDNN-LNPVWNQTFELIAED  322 (379)
Q Consensus       262 ~~g~L~V~V~~A~~L~~~d------------------~~g~sdPyv~v~~~~~~~~~T~v~~~t-lnP~Wne~f~f~v~~  322 (379)
                      -+|.|.++|.+|++|++.+                  ..+.||||+.+.+++....||+++.+. .||.|+|+|.+.+..
T Consensus         6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah   85 (808)
T PLN02270          6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAH   85 (808)
T ss_pred             eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeecc
Confidence            3899999999999998632                  124679999999998788999999884 699999999999977


Q ss_pred             CCCceEEEEEEEcccCCCC-------------------cEEEcccCCCCceeeEEEEEEEEEEeeE
Q 016987          323 KETQSLIFEVYIFLLFFPA-------------------QWVPILNSEYGAALSNMHLIYIYKYLRI  369 (379)
Q Consensus       323 ~~~~~L~i~V~D~d~~~~d-------------------~w~~L~~~~~g~~~g~i~l~~~~~~~~~  369 (379)
                      . ...+.++|.|.|.++..                   +|+++.+.+.....+.-+|.++++|+++
T Consensus        86 ~-~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~  150 (808)
T PLN02270         86 M-ASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEV  150 (808)
T ss_pred             C-cceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEc
Confidence            5 57899999999988763                   8999997765555676677777777664

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=98.93  E-value=2.3e-09  Score=107.77  Aligned_cols=101  Identities=20%  Similarity=0.250  Sum_probs=88.5

Q ss_pred             CcEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC-
Q 016987          263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA-  341 (379)
Q Consensus       263 ~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d-  341 (379)
                      ...|.|+|.+|+||++.+..|.+||||.+.++.....||.++.+++.|-|.|.|.|.+... -+.|.+-|||+| +++| 
T Consensus         4 ~~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~-F~~l~fYv~D~d-~~~D~   81 (800)
T KOG2059|consen    4 EQSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRT-FRYLSFYVWDRD-LKRDD   81 (800)
T ss_pred             ccceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcc-eeeEEEEEeccc-ccccc
Confidence            3468999999999999999999999999999987789999999999999999999998754 578999999999 6665 


Q ss_pred             -------------------cEEEcccC-CCCceeeEEEEEEEEE
Q 016987          342 -------------------QWVPILNS-EYGAALSNMHLIYIYK  365 (379)
Q Consensus       342 -------------------~w~~L~~~-~~g~~~g~i~l~~~~~  365 (379)
                                         .|+.|... ...+..|+++|.+.+.
T Consensus        82 ~IGKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~  125 (800)
T KOG2059|consen   82 IIGKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALT  125 (800)
T ss_pred             ccceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEec
Confidence                               79999754 3567889999998876

>PLN02952 phosphoinositide phospholipase C

Probab=98.92  E-value=9.7e-09  Score=104.67  Aligned_cols=104  Identities=21%  Similarity=0.319  Sum_probs=83.3

Q ss_pred             CcEEEEEEeeccccccc------ccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEE
Q 016987          263 QGKVAVTIVKANNLKNM------EMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEV  332 (379)
Q Consensus       263 ~g~L~V~V~~A~~L~~~------d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V  332 (379)
                      ...|.|+|+.|++++..      +.....||||++.+-+    ..+++|+++.++.||.|||+|.|.+..++-..+.++|
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V  548 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV  548 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence            46899999999987531      1123359999998743    3567999999999999999999999877667799999


Q ss_pred             EEcccCCCC-----------------cEEEcccCCCCceeeEEEEEEEEEEe
Q 016987          333 YIFLLFFPA-----------------QWVPILNSEYGAALSNMHLIYIYKYL  367 (379)
Q Consensus       333 ~D~d~~~~d-----------------~w~~L~~~~~g~~~g~i~l~~~~~~~  367 (379)
                      ||+|..+.|                 .|++|. ...|+..+...|.++|+|.
T Consensus       549 ~D~D~~~~ddfiGq~~lPv~~Lr~GyR~VpL~-~~~G~~l~~a~Llv~f~~~  599 (599)
T PLN02952        549 REYDMSEKDDFGGQTCLPVSELRPGIRSVPLH-DKKGEKLKNVRLLMRFIFV  599 (599)
T ss_pred             EecCCCCCCCeEEEEEcchhHhcCCceeEeCc-CCCCCCCCCEEEEEEEEeC
Confidence            999987655                 799996 5667778888999998863

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=98.90  E-value=1e-08  Score=79.93  Aligned_cols=74  Identities=45%  Similarity=0.567  Sum_probs=64.3

Q ss_pred             EEEEEeecccccccccCCCCCcEEEEEEcCe--eeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCC
Q 016987          266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPL--FKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFF  339 (379)
Q Consensus       266 L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~--~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~  339 (379)
                      +.|+|.+|+++......+..+||+++++.+.  ...+|+++.++.||.|||+|.|.+.....+.|.++|||++...
T Consensus         2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~   77 (101)
T smart00239        2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFG   77 (101)
T ss_pred             eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCcc
Confidence            6899999999988776567899999999874  4799999999999999999999998755788999999998654

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=98.89  E-value=4.4e-09  Score=111.16  Aligned_cols=109  Identities=20%  Similarity=0.299  Sum_probs=89.9

Q ss_pred             cCCcEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCC
Q 016987          261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFP  340 (379)
Q Consensus       261 ~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~  340 (379)
                      .+.|-|.|.+..|.||+..|..|.+||||++.+.....++|+++++|+||+|||.+.+.+.+.....+.+.|+|||.-.+
T Consensus      1037 ~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~k 1116 (1227)
T COG5038        1037 ENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEK 1116 (1227)
T ss_pred             cccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccCCC
Confidence            46899999999999999999999999999999988668999999999999999999999986557789999999998766


Q ss_pred             C-------------------cE-EEcccCCCCceeeEEEEEEEEEEeeE
Q 016987          341 A-------------------QW-VPILNSEYGAALSNMHLIYIYKYLRI  369 (379)
Q Consensus       341 d-------------------~w-~~L~~~~~g~~~g~i~l~~~~~~~~~  369 (379)
                      +                   .| .+|.++..+...|.++.-+.|+.+.+
T Consensus      1117 nd~lg~~~idL~~l~~~~~~n~~i~ldgk~~~~~~g~~~~~~~~r~~~~ 1165 (1227)
T COG5038        1117 NDLLGTAEIDLSKLEPGGTTNSNIPLDGKTFIVLDGTLHPGFNFRSKYA 1165 (1227)
T ss_pred             ccccccccccHhhcCcCCccceeeeccCcceEecccEeecceecchhhh
Confidence            4                   23 35543334566777777777765444

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=98.84  E-value=1.7e-08  Score=83.94  Aligned_cols=76  Identities=24%  Similarity=0.239  Sum_probs=62.4

Q ss_pred             EEEEEeecccccccc--cCCC--CCcEEEEEEcC--eeeEeeeccCCCCC--CeEeeEEEEEecC---------------
Q 016987          266 VAVTIVKANNLKNME--MIGK--SDPYAVVHIKP--LFKVKTNVVDNNLN--PVWNQTFELIAED---------------  322 (379)
Q Consensus       266 L~V~V~~A~~L~~~d--~~g~--sdPyv~v~~~~--~~~~~T~v~~~tln--P~Wne~f~f~v~~---------------  322 (379)
                      |+|.|.+|++++..+  ..|.  +||||+..+.+  ..+++|.++.+++|  |.||+.|.|.+..               
T Consensus         2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~   81 (133)
T cd08374           2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF   81 (133)
T ss_pred             EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence            799999999965443  4564  99999999876  46799999999999  9999999987644               


Q ss_pred             --------CCCceEEEEEEEcccCCCC
Q 016987          323 --------KETQSLIFEVYIFLLFFPA  341 (379)
Q Consensus       323 --------~~~~~L~i~V~D~d~~~~d  341 (379)
                              .....|.++|||.|.+++|
T Consensus        82 ~~~~~~e~~~~~~L~lqvwD~D~~s~d  108 (133)
T cd08374          82 WSLDETEYKIPPKLTLQVWDNDKFSPD  108 (133)
T ss_pred             cccCcceEecCcEEEEEEEECcccCCC
Confidence                    1245799999999998776

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.84  E-value=1.2e-08  Score=80.16  Aligned_cols=77  Identities=19%  Similarity=0.371  Sum_probs=62.9

Q ss_pred             EEEEEeecccccccc---cCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC-
Q 016987          266 VAVTIVKANNLKNME---MIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA-  341 (379)
Q Consensus       266 L~V~V~~A~~L~~~d---~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d-  341 (379)
                      |.|+|.+|+++...+   .++++|||+.+.++...+.||++   +.||.|||+|.|.+.  ....+.+.|||+..-..- 
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vd--k~nEiel~VyDk~~~~~~P   75 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVE--KNNEEEVIVYDKGGDQPVP   75 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEec--CCcEEEEEEEeCCCCeecc
Confidence            578999999998887   56788999999999977889987   478999999999994  367899999998543221 


Q ss_pred             ---cEEEcc
Q 016987          342 ---QWVPIL  347 (379)
Q Consensus       342 ---~w~~L~  347 (379)
                         -|++|.
T Consensus        76 i~llW~~~s   84 (109)
T cd08689          76 VGLLWLRLS   84 (109)
T ss_pred             eeeehhhHH
Confidence               566664

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd00030 C2 C2 domain

Probab=98.73  E-value=5.9e-08  Score=75.13  Aligned_cols=74  Identities=45%  Similarity=0.637  Sum_probs=63.7

Q ss_pred             EEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCC
Q 016987          266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFF  339 (379)
Q Consensus       266 L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~  339 (379)
                      |.|++++|+++......+..+||+.+.+.....++|++..++.||.|+|.|.|.+.......+.++|||++...
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~   74 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFS   74 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCC
Confidence            46899999999887666789999999998646789999999999999999999987644678999999998764

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>PLN02230 phosphoinositide phospholipase C 4

Probab=98.73  E-value=7.2e-08  Score=98.25  Aligned_cols=103  Identities=19%  Similarity=0.247  Sum_probs=80.4

Q ss_pred             CcEEEEEEeeccccccc------ccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEE
Q 016987          263 QGKVAVTIVKANNLKNM------EMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEV  332 (379)
Q Consensus       263 ~g~L~V~V~~A~~L~~~------d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V  332 (379)
                      ..+|.|+|+.+++++..      +.....||||++.+-+    ..+++|++..++.||.|||+|.|.+..++-..|+++|
T Consensus       468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V  547 (598)
T PLN02230        468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV  547 (598)
T ss_pred             CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence            46899999999987421      2223469999999742    2457888889999999999999999887778899999


Q ss_pred             EEcccCCCC-----------------cEEEcccCCCCceeeEEEEEEEEEE
Q 016987          333 YIFLLFFPA-----------------QWVPILNSEYGAALSNMHLIYIYKY  366 (379)
Q Consensus       333 ~D~d~~~~d-----------------~w~~L~~~~~g~~~g~i~l~~~~~~  366 (379)
                      +|+|...+|                 ..++|.+ +.|+......|.++|+|
T Consensus       548 ~d~d~~~~ddfiGQ~~lPv~~Lr~GyR~V~L~~-~~G~~l~~~~Ll~~f~~  597 (598)
T PLN02230        548 HEHDINEKDDFGGQTCLPVSEIRQGIHAVPLFN-RKGVKYSSTRLLMRFEF  597 (598)
T ss_pred             EECCCCCCCCEEEEEEcchHHhhCccceEeccC-CCcCCCCCCeeEEEEEe
Confidence            999986655                 6889974 45666556788888876

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.68  E-value=1.9e-08  Score=101.31  Aligned_cols=112  Identities=24%  Similarity=0.353  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHhhhcccCceEEeeeCCCCcccccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcCe------e
Q 016987          224 DMIDDTVDSIITDMLQWPHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL------F  297 (379)
Q Consensus       224 ~~i~~~i~~~i~~~~v~P~~~~vpl~~~~~d~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~------~  297 (379)
                      +.|+.+-++-+......-+++-+      ....-.|......|.|.|+.|+++.+.|.+|.|||||++.+++.      .
T Consensus       913 ~lIe~fY~d~Lkqq~la~~~fg~------lsvr~~y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~  986 (1103)
T KOG1328|consen  913 QLIEKFYKDLLKQQALADHQFGV------LSVRAYYNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVP  986 (1103)
T ss_pred             HHHHHHHHHHHHHHHHhhCcCCc------eEEEEEeeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccch
Confidence            45555555555544333222210      12233355778899999999999999999999999999999872      4


Q ss_pred             eEeeeccCCCCCCeEeeEEEEEecCC----CCceEEEEEEEcccCCCC
Q 016987          298 KVKTNVVDNNLNPVWNQTFELIAEDK----ETQSLIFEVYIFLLFFPA  341 (379)
Q Consensus       298 ~~~T~v~~~tlnP~Wne~f~f~v~~~----~~~~L~i~V~D~d~~~~d  341 (379)
                      .++|+++.+|+||+|+|+|+|.|...    +...+.++|+|+|-++.+
T Consensus       987 ~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTVMDHD~L~sN 1034 (1103)
T KOG1328|consen  987 VQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTVMDHDYLRSN 1034 (1103)
T ss_pred             hhhhhhhhccccchhhhheeeecCccccccccceEEEEeeccceeccc
Confidence            68999999999999999999998542    245689999999988765

>PLN02222 phosphoinositide phospholipase C 2

Probab=98.64  E-value=2.5e-07  Score=94.20  Aligned_cols=103  Identities=20%  Similarity=0.282  Sum_probs=78.3

Q ss_pred             CcEEEEEEeeccccc----cc--ccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEE
Q 016987          263 QGKVAVTIVKANNLK----NM--EMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEV  332 (379)
Q Consensus       263 ~g~L~V~V~~A~~L~----~~--d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V  332 (379)
                      ...|.|+|+.+++++    ..  +.....||||++.+-+    ..+++|+++.++.||.|||+|.|.+..++-..+++.|
T Consensus       451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V  530 (581)
T PLN02222        451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV  530 (581)
T ss_pred             cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence            457999999998853    11  1223569999999843    3567899999999999999999998877777899999


Q ss_pred             EEcccCCCC-----------------cEEEcccCCCCceeeEEEEEEEEEE
Q 016987          333 YIFLLFFPA-----------------QWVPILNSEYGAALSNMHLIYIYKY  366 (379)
Q Consensus       333 ~D~d~~~~d-----------------~w~~L~~~~~g~~~g~i~l~~~~~~  366 (379)
                      +|+|....|                 ..++|.+. .|+......|.+++++
T Consensus       531 ~d~D~~~~ddfigq~~lPv~~Lr~GyR~V~L~~~-~g~~l~~a~Lfv~~~~  580 (581)
T PLN02222        531 HEYDMSEKDDFGGQTCLPVWELSQGIRAFPLHSR-KGEKYKSVKLLVKVEF  580 (581)
T ss_pred             EECCCCCCCcEEEEEEcchhhhhCccceEEccCC-CcCCCCCeeEEEEEEe
Confidence            999876654                 68898754 4544445577777765

>PLN02228 Phosphoinositide phospholipase C

Probab=98.59  E-value=4.4e-07  Score=92.19  Aligned_cols=105  Identities=17%  Similarity=0.202  Sum_probs=79.9

Q ss_pred             CcEEEEEEeecccccc---cc---cCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeE-eeEEEEEecCCCCceEEEE
Q 016987          263 QGKVAVTIVKANNLKN---ME---MIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVW-NQTFELIAEDKETQSLIFE  331 (379)
Q Consensus       263 ~g~L~V~V~~A~~L~~---~d---~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~W-ne~f~f~v~~~~~~~L~i~  331 (379)
                      ...|+|+|++|++|+.   .+   .....||||++.+-+    ..+++|+++.++.||.| ||+|.|.+..++-..|++.
T Consensus       430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~  509 (567)
T PLN02228        430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK  509 (567)
T ss_pred             CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence            3479999999998731   11   123479999998743    24679999989999999 9999999988777789999


Q ss_pred             EEEcccCCCC-----------------cEEEcccCCCCceeeEEEEEEEEEEee
Q 016987          332 VYIFLLFFPA-----------------QWVPILNSEYGAALSNMHLIYIYKYLR  368 (379)
Q Consensus       332 V~D~d~~~~d-----------------~w~~L~~~~~g~~~g~i~l~~~~~~~~  368 (379)
                      |+|+|..+.|                 ..++|.+ ..|+......|.+++.+.+
T Consensus       510 V~D~d~~~~d~figq~~lPv~~Lr~GYR~VpL~~-~~G~~l~~atLfv~~~~~~  562 (567)
T PLN02228        510 VQDYDNDTQNDFAGQTCLPLPELKSGVRAVRLHD-RAGKAYKNTRLLVSFALDP  562 (567)
T ss_pred             EEeCCCCCCCCEEEEEEcchhHhhCCeeEEEccC-CCCCCCCCeEEEEEEEEcC
Confidence            9999876655                 6788874 4566655567777777654

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=98.56  E-value=2.8e-07  Score=94.30  Aligned_cols=103  Identities=26%  Similarity=0.339  Sum_probs=84.0

Q ss_pred             EEEEEEeecccccccc-cC---CCCCcEEEEEEcC----eeeEeee-ccCCCCCCeEeeEEEEEecCCCCceEEEEEEEc
Q 016987          265 KVAVTIVKANNLKNME-MI---GKSDPYAVVHIKP----LFKVKTN-VVDNNLNPVWNQTFELIAEDKETQSLIFEVYIF  335 (379)
Q Consensus       265 ~L~V~V~~A~~L~~~d-~~---g~sdPyv~v~~~~----~~~~~T~-v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~  335 (379)
                      +|.|+|++++++.... ..   ..+|||+.+.+-+    ..+.+|+ +..|+.||.|+|+|+|.+..++-.-+++.|+|+
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~  696 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY  696 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence            6999999999765432 22   3579999998754    2467888 566789999999999999998888899999999


Q ss_pred             ccCCCC-----------------cEEEcccCCCCceeeEEEEEEEEEEee
Q 016987          336 LLFFPA-----------------QWVPILNSEYGAALSNMHLIYIYKYLR  368 (379)
Q Consensus       336 d~~~~d-----------------~w~~L~~~~~g~~~g~i~l~~~~~~~~  368 (379)
                      |..++|                 .-+||.+ .+|+..-...|.+++++.+
T Consensus       697 d~~~~ddF~GQ~tlP~~~L~~GyRhVpL~~-~~G~~~~~asLfv~i~~~~  745 (746)
T KOG0169|consen  697 DYIGKDDFIGQTTLPVSELRQGYRHVPLLS-REGEALSSASLFVRIAIVE  745 (746)
T ss_pred             CCCCcccccceeeccHHHhhCceeeeeecC-CCCccccceeEEEEEEEec
Confidence            998866                 6889974 4888888889988888764

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=98.54  E-value=2.3e-07  Score=91.60  Aligned_cols=101  Identities=24%  Similarity=0.419  Sum_probs=84.8

Q ss_pred             CcEEEEEEeecccccccccCC-CCCcEEEEEEcCeeeEeeeccCCCCCCeEe-eEEEEEecC--CCCceEEEEEEEcccC
Q 016987          263 QGKVAVTIVKANNLKNMEMIG-KSDPYAVVHIKPLFKVKTNVVDNNLNPVWN-QTFELIAED--KETQSLIFEVYIFLLF  338 (379)
Q Consensus       263 ~g~L~V~V~~A~~L~~~d~~g-~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wn-e~f~f~v~~--~~~~~L~i~V~D~d~~  338 (379)
                      -|.|-|+|..|++|+.+|..+ ..|.|+.+.+++ ..++|.+-.+++||.|| +.|.|.+.+  ..+.+|.+++.|+|..
T Consensus         2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n-~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dty   80 (1169)
T KOG1031|consen    2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFAN-TTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTY   80 (1169)
T ss_pred             CCcceeEEEeccCCcccccccccchheeEEEecc-cceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccc
Confidence            367889999999999999654 569999999998 68999999999999998 568898865  3467899999999988


Q ss_pred             CCC------------------------------cEEEcccCCCCceeeEEEEEEEEE
Q 016987          339 FPA------------------------------QWVPILNSEYGAALSNMHLIYIYK  365 (379)
Q Consensus       339 ~~d------------------------------~w~~L~~~~~g~~~g~i~l~~~~~  365 (379)
                      +.+                              +|+|+.+.-.| .+|+|.+.+...
T Consensus        81 sandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihg-irgeinvivkvd  136 (1169)
T KOG1031|consen   81 SANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHG-IRGEINVIVKVD  136 (1169)
T ss_pred             ccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceeccc-ccceeEEEEEEe
Confidence            653                              89999987777 578888877665

>KOG3532 consensus Predicted protein kinase [General function prediction only]

Probab=98.35  E-value=2.2e-06  Score=86.14  Aligned_cols=233  Identities=16%  Similarity=0.265  Sum_probs=151.9

Q ss_pred             ccCCCccccCCC-------CcchHHHHHHHHhHchhh------HHHHHHHHHHhHHHHHHhcC-CCCcceEEEeEEecCC
Q 016987           55 GDNFPVWISFPV-------YEQVKWLNKELSKLWPFV------ADAAELVIKESVEPLLEEYR-PPGITSLKFSKLSLGN  120 (379)
Q Consensus        55 ~~~~P~w~~~~d-------~E~~eWlN~~l~~~Wp~~------~~~~~~~i~~~l~~~l~~~~-p~~~~~i~~~~~~lG~  120 (379)
                      +.+.|.|+....       .-.|-.+|.+++......      +.++-+.+...++..+.... ..-++.+.+.++-+|.
T Consensus        79 ~~~~~t~~~~~~~~~~~~~AS~c~s~~~V~h~lfqE~k~a~~~r~w~~~Rl~~e~~~~~~~~~~g~LL~~~~i~elElg~  158 (1051)
T KOG3532|consen   79 PEELRTFLKSGEDGQGISKASSCNSISLVLHMLFQEHKDTRALRRWVHKRLQMEMNDITTRSAAGRLLQEIRIRELELGT  158 (1051)
T ss_pred             cccccccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccceehhhhcc
Confidence            345788887643       123455666666665431      11222333333334443322 3368999999999999


Q ss_pred             CCCeeeeeEEEecC------------C-------------CeEEEEEEEEEcCCCcEEEEEEeeeeeeEEEEEEEEEEEE
Q 016987          121 VAPKIEGIRVQSLK------------Q-------------GQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFT  175 (379)
Q Consensus       121 ~pP~i~~ir~~~~~------------~-------------~~~~ld~~~~~~g~~~i~l~~~~~~~~~~~v~v~~~~~~g  175 (379)
                      +.|.+++.+++..+            +             ..+.+=.|+.|.|+..-++++....+..-.+.|+..+++|
T Consensus       159 ~f~~~~sLtvH~i~~~s~~l~~~q~sk~R~~~~~~~~~~i~~~~~~ldidy~G~fTtsid~~s~~~kk~S~~iKl~~l~G  238 (1051)
T KOG3532|consen  159 KFMTINSLRVHSVENLSEFLKYAQTSKHRFILSPVNVYCIQKIVFILDIDYSGGFTTSIDVSTIIAKKASLSVKITKLTG  238 (1051)
T ss_pred             ccccccceEEeecccHHHHHHhhhhhhhhcccCCcceecccccccccccccCCCcceecCCccccccCCceeEEEEEecc
Confidence            99999999998521            1             1234556889999887777777655555567777888899


Q ss_pred             EEEEEEEecCCCCccceEEEEecCCCcceEEEEeeecCcCcccccchHHHHHHHHHHHHhhhcccCceEE--eee-----
Q 016987          176 VIRVIFQLAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQWPHRIV--VPI-----  248 (379)
Q Consensus       176 ~~Rv~l~l~~~~P~~~~v~~sf~~~P~p~idf~l~~~g~~i~~iP~l~~~i~~~i~~~i~~~~v~P~~~~--vpl-----  248 (379)
                      .+|+.+.   ..|+ .+++++|...|.-+.|...+-.|-.+-+  -+.+.|++.++.++.+...|||+--  .|.     
T Consensus       239 m~r~~~~---r~py-~hw~~sf~G~P~~e~di~s~~qg~qLQ~--~I~q~i~~~ir~~~~rKhT~pnyK~ry~pff~~~~  312 (1051)
T KOG3532|consen  239 MVRVILS---RQPY-HHWTFSFVGQPIFETDINSQIQGHQLQR--LIPQIIKEAIRRSLQRKHTWPNYKIRYRPFFPNPI  312 (1051)
T ss_pred             ceeEEEE---eccc-eeeeeeeccCchhhhhhHHHHHHHHHHH--HhHHHHHHHHHHHHHhhccCcchhhhccccccCcc
Confidence            9999983   4555 7889999999755555555443321111  2557788888889999999999732  122     


Q ss_pred             CCC-CcccccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC
Q 016987          249 GGI-PVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP  295 (379)
Q Consensus       249 ~~~-~~d~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~  295 (379)
                      ... +.+.+..-..+.|.+.|++.++..|..  ..++..-||.+...+
T Consensus       313 ~~a~~~~~s~~~i~~~G~~~V~~lE~srL~~--~~k~~e~Yct~T~e~  358 (1051)
T KOG3532|consen  313 FQASPPINSFTHIKMEGGIEVTVLECSRLKD--KNKNYEVYCTVTIES  358 (1051)
T ss_pred             cccCcchhhhhheeccCceeEeehhhhhhhc--cCCccceeeeccccC
Confidence            111 112222223689999999999887764  457788898887643

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.34  E-value=6.7e-08  Score=97.47  Aligned_cols=77  Identities=25%  Similarity=0.482  Sum_probs=65.1

Q ss_pred             cCCcEEEEEEeecccccccccCCCCCcEEEEEEcC------------------------------eeeEeeeccCCCCCC
Q 016987          261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP------------------------------LFKVKTNVVDNNLNP  310 (379)
Q Consensus       261 ~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~------------------------------~~~~~T~v~~~tlnP  310 (379)
                      +|.-.+.|.+.+|++|.++|..|.||||+...+.+                              +-.+-|+++++|+||
T Consensus       111 ~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnP  190 (1103)
T KOG1328|consen  111 PPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNP  190 (1103)
T ss_pred             CCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCc
Confidence            45566778889999999999999999999887632                              011457888999999


Q ss_pred             eEeeEEEEEecCCCCceEEEEEEEccc
Q 016987          311 VWNQTFELIAEDKETQSLIFEVYIFLL  337 (379)
Q Consensus       311 ~Wne~f~f~v~~~~~~~L~i~V~D~d~  337 (379)
                      +|+|.|.|.+.|.....+.+.+||+|.
T Consensus       191 kW~EkF~F~IeDv~tDqfHlDIWDHDD  217 (1103)
T KOG1328|consen  191 KWSEKFQFTIEDVQTDQFHLDIWDHDD  217 (1103)
T ss_pred             chhhheeeehhccccceeeeecccCCc
Confidence            999999999999888899999999995

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=98.33  E-value=1.5e-06  Score=88.98  Aligned_cols=77  Identities=29%  Similarity=0.347  Sum_probs=64.1

Q ss_pred             cEEEEEEeecccccccccCCCCCcEEEEEEcC-----eeeEeeeccCCCCCCeEe-eEEEEEecCCCCceEEEEEEEccc
Q 016987          264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP-----LFKVKTNVVDNNLNPVWN-QTFELIAEDKETQSLIFEVYIFLL  337 (379)
Q Consensus       264 g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~-----~~~~~T~v~~~tlnP~Wn-e~f~f~v~~~~~~~L~i~V~D~d~  337 (379)
                      -.|.|.|+.|++|+... .|...||+.+.+-+     ...++|.+..|++||+|| |+|+|.+.+++-..|++.|+|.|.
T Consensus      1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred             eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence            47889999999999543 34567999998743     345667778899999999 999999999988889999999999


Q ss_pred             CCCC
Q 016987          338 FFPA  341 (379)
Q Consensus       338 ~~~d  341 (379)
                      ++..
T Consensus      1144 fs~~ 1147 (1267)
T KOG1264|consen 1144 FSDP 1147 (1267)
T ss_pred             cCCc
Confidence            9874

>PLN02352 phospholipase D epsilon

Probab=98.16  E-value=1.1e-05  Score=84.20  Aligned_cols=104  Identities=15%  Similarity=0.243  Sum_probs=73.7

Q ss_pred             CCcEEEEEEeeccccccc----ccC-CCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcc
Q 016987          262 PQGKVAVTIVKANNLKNM----EMI-GKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFL  336 (379)
Q Consensus       262 ~~g~L~V~V~~A~~L~~~----d~~-g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d  336 (379)
                      -+|+|.++|.+|+.+...    +.. ...|||+.+.+++....||   .+.-||.|+|+|.+.+...-...+.++|.|..
T Consensus         8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~~~   84 (758)
T PLN02352          8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKTKC   84 (758)
T ss_pred             cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEecCC
Confidence            489999999999844322    111 1239999999998777888   55669999999999997753357999998843


Q ss_pred             cC-------------C---CCcEEEcccCCCCceeeEEEEEEEEEEeeE
Q 016987          337 LF-------------F---PAQWVPILNSEYGAALSNMHLIYIYKYLRI  369 (379)
Q Consensus       337 ~~-------------~---~d~w~~L~~~~~g~~~g~i~l~~~~~~~~~  369 (379)
                      .+             +   -++|+++++.+.....| -++.++.+|+++
T Consensus        85 ~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~  132 (758)
T PLN02352         85 SILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPE-LKLRFMLWFRPA  132 (758)
T ss_pred             eEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCC-CEEEEEEEEEEh
Confidence            21             1   13899999766555555 555555555554

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=97.96  E-value=5.1e-06  Score=87.02  Aligned_cols=93  Identities=27%  Similarity=0.336  Sum_probs=78.0

Q ss_pred             cCCcEEEEEEeecccccccccCCCCCcEEEEEEcCe-eeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCC
Q 016987          261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL-FKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFF  339 (379)
Q Consensus       261 ~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~-~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~  339 (379)
                      +....++|++++|-+|.+.|..|.+|||+.+.++++ ..-++..+.+++||++.+.|++....+....+.++|||+|.++
T Consensus       610 pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~  689 (1105)
T KOG1326|consen  610 PIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEA  689 (1105)
T ss_pred             cceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccc
Confidence            344578899999999999999999999999999873 2356778899999999999999888777778999999999998


Q ss_pred             CC------------cEEEcccCCCCc
Q 016987          340 PA------------QWVPILNSEYGA  353 (379)
Q Consensus       340 ~d------------~w~~L~~~~~g~  353 (379)
                      .|            +|+...++.-|.
T Consensus       690 ~d~~iget~iDLEnR~~T~~~a~cgl  715 (1105)
T KOG1326|consen  690 QDEKIGETTIDLENRWLTRHRARCGL  715 (1105)
T ss_pred             ccchhhceehhhhhcccCcCCcccCc
Confidence            76            677776665554

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.85  E-value=2e-05  Score=73.52  Aligned_cols=82  Identities=23%  Similarity=0.289  Sum_probs=69.1

Q ss_pred             cccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecC--CCCceEEEEE
Q 016987          259 ELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAED--KETQSLIFEV  332 (379)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~--~~~~~L~i~V  332 (379)
                      |.....-+.|+++.+..|..+|..|.+|||++.++.+    ..+.+|.+.++++||.+|++|.+.+..  .....+.|+|
T Consensus       228 ~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsv  307 (362)
T KOG1013|consen  228 YSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSV  307 (362)
T ss_pred             cCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEee
Confidence            4456788899999999999999999999999998865    356889999999999999999988753  3356789999


Q ss_pred             EEcccCCC
Q 016987          333 YIFLLFFP  340 (379)
Q Consensus       333 ~D~d~~~~  340 (379)
                      ||++.-+.
T Consensus       308 gd~~~G~s  315 (362)
T KOG1013|consen  308 GDYDIGKS  315 (362)
T ss_pred             cccCCCcC
Confidence            99998633

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=97.51  E-value=0.00013  Score=74.30  Aligned_cols=103  Identities=18%  Similarity=0.313  Sum_probs=72.6

Q ss_pred             CcEEEEEEeecccccccccCCCCCcEEEEEEcC---eeeEeeeccCCCCCCeEeeEEEEEecCC---------------C
Q 016987          263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP---LFKVKTNVVDNNLNPVWNQTFELIAEDK---------------E  324 (379)
Q Consensus       263 ~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~---~~~~~T~v~~~tlnP~Wne~f~f~v~~~---------------~  324 (379)
                      ...+.+.+.+++++-+.+ .+.+|||+++....   ....+|++++.|.+|.|+|.|+|.+...               .
T Consensus       130 ~~~~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~  208 (800)
T KOG2059|consen  130 SSGLVCHVLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDD  208 (800)
T ss_pred             CCcchhhhhhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCc
Confidence            344556666677666655 35599999998754   2336899999999999999999988532               2


Q ss_pred             CceEEEEEEE-cccCCCC--------------------cEEEcccCCCCce------eeEEEEEEEEEE
Q 016987          325 TQSLIFEVYI-FLLFFPA--------------------QWVPILNSEYGAA------LSNMHLIYIYKY  366 (379)
Q Consensus       325 ~~~L~i~V~D-~d~~~~d--------------------~w~~L~~~~~g~~------~g~i~l~~~~~~  366 (379)
                      ...+++++|| .+....+                    .||.|+..+.|+.      .|..++.+.|.-
T Consensus       209 ~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~  277 (800)
T KOG2059|consen  209 MLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTE  277 (800)
T ss_pred             eeeEEEeeccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeee
Confidence            3468899998 4433322                    8999986554433      578888887763

>PLN02964 phosphatidylserine decarboxylase

Probab=97.41  E-value=0.00034  Score=72.52  Aligned_cols=73  Identities=21%  Similarity=0.264  Sum_probs=60.8

Q ss_pred             cCCcEEEEEEeecccccccccCCCCCcEEEE-EEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCC
Q 016987          261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVV-HIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFF  339 (379)
Q Consensus       261 ~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v-~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~  339 (379)
                      .-.|...+++++|+    ++   ..|||..+ +++. +.+||.+.++|+||+||+...|.+...+.....+.|||++.++
T Consensus        51 ~~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~-~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  122 (644)
T PLN02964         51 DFSGIALLTLVGAE----MK---FKDKWLACVSFGE-QTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLS  122 (644)
T ss_pred             cccCeEEEEeehhh----hc---cCCcEEEEEEecc-eeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCC
Confidence            45899999999997    33   36998665 4565 8999999999999999999999887665566799999999998


Q ss_pred             CC
Q 016987          340 PA  341 (379)
Q Consensus       340 ~d  341 (379)
                      .+
T Consensus       123 ~n  124 (644)
T PLN02964        123 KN  124 (644)
T ss_pred             HH
Confidence            76

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=97.39  E-value=0.00015  Score=77.32  Aligned_cols=79  Identities=23%  Similarity=0.272  Sum_probs=63.3

Q ss_pred             CCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEE---ecCCCCceEEEEEEE
Q 016987          262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELI---AEDKETQSLIFEVYI  334 (379)
Q Consensus       262 ~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~---v~~~~~~~L~i~V~D  334 (379)
                      ..|+|.|-|.-|++|.-..-....||||+.++.+    ..++||+++++|.||.|||.....   ......+.|.++||.
T Consensus      1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred             cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence            5899999999999996544445689999999976    357899999999999999987654   233445789999999


Q ss_pred             cccCCC
Q 016987          335 FLLFFP  340 (379)
Q Consensus       335 ~d~~~~  340 (379)
                      .+.+..
T Consensus      1602 ~~~~~e 1607 (1639)
T KOG0905|consen 1602 NGGLLE 1607 (1639)
T ss_pred             ccceee
Confidence            887644

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.25  E-value=5.1e-05  Score=70.89  Aligned_cols=88  Identities=30%  Similarity=0.354  Sum_probs=70.9

Q ss_pred             cccccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEE--EEEecC-CCC
Q 016987          253 VDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTF--ELIAED-KET  325 (379)
Q Consensus       253 ~d~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f--~f~v~~-~~~  325 (379)
                      +++..+|+.....+.+++..|++|++++..+..|||++..+++    ..+.+|++..+++||.|+|+-  .+...+ ...
T Consensus        82 ~~~~~~y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~  161 (362)
T KOG1013|consen   82 LEFELLYDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHL  161 (362)
T ss_pred             hhhhhhhhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhh
Confidence            3456778888999999999999999999999999999999876    345788899999999999864  344433 234


Q ss_pred             ceEEEEEEEcccCCC
Q 016987          326 QSLIFEVYIFLLFFP  340 (379)
Q Consensus       326 ~~L~i~V~D~d~~~~  340 (379)
                      ..+.+.|.|.+.+..
T Consensus       162 K~~Rk~vcdn~~~~~  176 (362)
T KOG1013|consen  162 KVLRKVVCDNDKKTH  176 (362)
T ss_pred             hhhheeeccCccccc
Confidence            567889999988764

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=96.99  E-value=0.00024  Score=74.91  Aligned_cols=80  Identities=28%  Similarity=0.237  Sum_probs=66.0

Q ss_pred             cCCcEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEec---------CCCCceEEEE
Q 016987          261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAE---------DKETQSLIFE  331 (379)
Q Consensus       261 ~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~---------~~~~~~L~i~  331 (379)
                      .....+++.+.+|+.|...|..+.+|||+.+..-+ +.+.|.++.+|+||.|+++..|.--         ......+.++
T Consensus       203 ~~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~-qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e  281 (1105)
T KOG1326|consen  203 VIHSPLRSYIYQARALGAPDKDDESDPDAAVEFCG-QSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFE  281 (1105)
T ss_pred             hhhhhhHHHHHHHHhhcCCCcccCCCchhhhhccc-ccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEE
Confidence            35667899999999999999999999999998887 6889999999999999999877421         1112357899


Q ss_pred             EEEcccCCCC
Q 016987          332 VYIFLLFFPA  341 (379)
Q Consensus       332 V~D~d~~~~d  341 (379)
                      +||.|+.+.+
T Consensus       282 ~yd~dr~g~~  291 (1105)
T KOG1326|consen  282 VYDLDRSGIN  291 (1105)
T ss_pred             eehhhhhchH
Confidence            9999987665

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.33  E-value=0.017  Score=58.79  Aligned_cols=73  Identities=36%  Similarity=0.477  Sum_probs=56.5

Q ss_pred             CcEEEEEEeecccccccccCCCCCcEEEEEE-cC-----eeeEeeeccCCCCCCeEeeEEEEEecCC---CCceEEEEEE
Q 016987          263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHI-KP-----LFKVKTNVVDNNLNPVWNQTFELIAEDK---ETQSLIFEVY  333 (379)
Q Consensus       263 ~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~-~~-----~~~~~T~v~~~tlnP~Wne~f~f~v~~~---~~~~L~i~V~  333 (379)
                      ...++|.|+.|.+|+=. .+|.-.||+.+.+ |+     .+++.|+.+.|+..|.+||+|.|.+.+.   +.-.|.+.|.
T Consensus      1124 ehkvtvkvvaandlkwq-tsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VK 1202 (1283)
T KOG1011|consen 1124 EHKVTVKVVAANDLKWQ-TSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVK 1202 (1283)
T ss_pred             cceEEEEEEecccccch-hccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeeh
Confidence            44688999999998643 2466789999986 33     4678899999999999999999998653   3446888887


Q ss_pred             Ecc
Q 016987          334 IFL  336 (379)
Q Consensus       334 D~d  336 (379)
                      |+-
T Consensus      1203 DYC 1205 (1283)
T KOG1011|consen 1203 DYC 1205 (1283)
T ss_pred             hhe
Confidence            764

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=96.22  E-value=0.0078  Score=49.27  Aligned_cols=75  Identities=20%  Similarity=0.272  Sum_probs=54.2

Q ss_pred             EEEEEeeccccccccc------------C-CCCCcEEEEEEc---CeeeEeeeccCCCCCCeEeeEEEEEec--------
Q 016987          266 VAVTIVKANNLKNMEM------------I-GKSDPYAVVHIK---PLFKVKTNVVDNNLNPVWNQTFELIAE--------  321 (379)
Q Consensus       266 L~V~V~~A~~L~~~d~------------~-g~sdPyv~v~~~---~~~~~~T~v~~~tlnP~Wne~f~f~v~--------  321 (379)
                      |.|.|.+|.+|+....            . -.-++|+++.+.   .....+|+++.++.-|.|+.+++|.+.        
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G   80 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG   80 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence            4678888888864321            0 124899999854   246789999999999999999999874        


Q ss_pred             C-------CCCceEEEEEEEcccCCC
Q 016987          322 D-------KETQSLIFEVYIFLLFFP  340 (379)
Q Consensus       322 ~-------~~~~~L~i~V~D~d~~~~  340 (379)
                      .       .+...+.++||+.+.-+.
T Consensus        81 e~~sLAElLe~~eiil~vwHr~~~s~  106 (143)
T cd08683          81 EAISLAELLESAEIILEVWHRNPKSA  106 (143)
T ss_pred             ccccHHHHhhcceEEeeeeecCCccc
Confidence            1       124468999999775443

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.08  E-value=0.011  Score=56.56  Aligned_cols=72  Identities=22%  Similarity=0.308  Sum_probs=56.4

Q ss_pred             cCCcEEEEEEeecccccccccCC-CCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEE
Q 016987          261 KPQGKVAVTIVKANNLKNMEMIG-KSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVY  333 (379)
Q Consensus       261 ~~~g~L~V~V~~A~~L~~~d~~g-~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~  333 (379)
                      ...|.+.|.+++|++|..+.-.+ .++||+++++.+    ..+.+|+...+|++|.+.+...|.-.. ....|.+.||
T Consensus       266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp-~~k~Lq~tv~  342 (405)
T KOG2060|consen  266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSP-PGKYLQGTVW  342 (405)
T ss_pred             cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCC-CccEEEEEEe
Confidence            56899999999999998765332 579999999864    345788888899999777776666443 4678999998

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=95.45  E-value=0.026  Score=56.91  Aligned_cols=71  Identities=27%  Similarity=0.416  Sum_probs=55.0

Q ss_pred             EeecccccccccCCCCCcEEEEEEc--C---eeeEeeeccCCCCCCeEeeEEEEEec----CCCCceEEEEEEEcccCCC
Q 016987          270 IVKANNLKNMEMIGKSDPYAVVHIK--P---LFKVKTNVVDNNLNPVWNQTFELIAE----DKETQSLIFEVYIFLLFFP  340 (379)
Q Consensus       270 V~~A~~L~~~d~~g~sdPyv~v~~~--~---~~~~~T~v~~~tlnP~Wne~f~f~v~----~~~~~~L~i~V~D~d~~~~  340 (379)
                      ..+|++|.++|.++++|||..++-.  .   ...++|.+.++++||.|.+ |.+...    ......+.+.+||+|..++
T Consensus       142 ~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~  220 (529)
T KOG1327|consen  142 SFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGK  220 (529)
T ss_pred             eeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCC
Confidence            4568999999999999999888743  2   3468999999999999988 333332    1235788999999998877


Q ss_pred             C
Q 016987          341 A  341 (379)
Q Consensus       341 d  341 (379)
                      +
T Consensus       221 ~  221 (529)
T KOG1327|consen  221 H  221 (529)
T ss_pred             c
Confidence            3

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=94.81  E-value=0.032  Score=42.59  Aligned_cols=83  Identities=14%  Similarity=0.213  Sum_probs=54.6

Q ss_pred             EEEeecccccccccCCCCCc--EEE--EEEcCeeeEeeeccCCCCCCeEeeEEEEEec--CCCCceEEEEEEEcccCCCC
Q 016987          268 VTIVKANNLKNMEMIGKSDP--YAV--VHIKPLFKVKTNVVDNNLNPVWNQTFELIAE--DKETQSLIFEVYIFLLFFPA  341 (379)
Q Consensus       268 V~V~~A~~L~~~d~~g~sdP--yv~--v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~--~~~~~~L~i~V~D~d~~~~d  341 (379)
                      ++++.++++.-....| -+|  |++  +.+.+....+|++.....||++.|+|.|.+.  ....-.|.++|+..-. ++.
T Consensus         3 itv~~c~d~s~~~~~~-e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~~~-RKe   80 (103)
T cd08684           3 ITVLKCKDLSWPSSCG-ENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQTP-RKR   80 (103)
T ss_pred             EEEEEecccccccccC-cCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeeccCC-ccc
Confidence            6788888885443333 234  443  2333335688999999999999999999874  3445678999998322 222


Q ss_pred             --cEEEcccCCCC
Q 016987          342 --QWVPILNSEYG  352 (379)
Q Consensus       342 --~w~~L~~~~~g  352 (379)
                        +|+.|--.+.|
T Consensus        81 ~iG~~sL~l~s~g   93 (103)
T cd08684          81 TIGECSLSLRTLS   93 (103)
T ss_pred             eeeEEEeecccCC
Confidence              78877433334

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=91.93  E-value=0.21  Score=52.86  Aligned_cols=72  Identities=24%  Similarity=0.271  Sum_probs=53.1

Q ss_pred             CCcEEEEEEeecccccccccCCCCCcEEEEEEcC------eeeEeeeccC-CCCCCeEeeE-EEEE-ecCCCCceEEEEE
Q 016987          262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP------LFKVKTNVVD-NNLNPVWNQT-FELI-AEDKETQSLIFEV  332 (379)
Q Consensus       262 ~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~------~~~~~T~v~~-~tlnP~Wne~-f~f~-v~~~~~~~L~i~V  332 (379)
                      -.+++.|+|++++-|..++    ...||.+.+=+      .+.+||++.. |++||+|+|. |.|. |--++-..|+|.|
T Consensus       701 IA~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiav  776 (1189)
T KOG1265|consen  701 IAATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAV  776 (1189)
T ss_pred             EEeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeee
Confidence            4578999999999987654    45899988732      2457787775 6899999875 6665 2223457899999


Q ss_pred             EEccc
Q 016987          333 YIFLL  337 (379)
Q Consensus       333 ~D~d~  337 (379)
                      |++..
T Consensus       777 yeEgg  781 (1189)
T KOG1265|consen  777 YEEGG  781 (1189)
T ss_pred             eccCC
Confidence            99764

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=91.90  E-value=0.32  Score=45.71  Aligned_cols=75  Identities=15%  Similarity=0.142  Sum_probs=57.5

Q ss_pred             cCCcEEEEEEeeccccccccc--CCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEccc
Q 016987          261 KPQGKVAVTIVKANNLKNMEM--IGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLL  337 (379)
Q Consensus       261 ~~~g~L~V~V~~A~~L~~~d~--~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~  337 (379)
                      ...|+|.+++..+++|+-...  .-.-+-||++....+.+.||.+......-.|.|+|+.++.+.  ..+.+-||.|+.
T Consensus        48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~--~vl~~lvySW~p  124 (442)
T KOG1452|consen   48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNI--EVLHYLVYSWPP  124 (442)
T ss_pred             cccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccc--eeeeEEEeecCc
Confidence            468999999999999975432  224588999999886677777766666678999999988753  567778887764

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=90.86  E-value=2  Score=36.91  Aligned_cols=71  Identities=18%  Similarity=0.198  Sum_probs=47.7

Q ss_pred             CcEEEEEEeecccccccccCCCCCcEEEEEE--cCe---eeEeeeccCCCCCCeEeeEEEEEe--cC-CCCceEEEEEEE
Q 016987          263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHI--KPL---FKVKTNVVDNNLNPVWNQTFELIA--ED-KETQSLIFEVYI  334 (379)
Q Consensus       263 ~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~--~~~---~~~~T~v~~~tlnP~Wne~f~f~v--~~-~~~~~L~i~V~D  334 (379)
                      ...++|++.++.++...+   .+|-|+.+.+  +..   ....|+.+. ..++.|||...|++  .+ +....|.+++|+
T Consensus         7 ~~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~   82 (158)
T cd08398           7 NSNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLDYDIYIPDLPRSARLCLSICS   82 (158)
T ss_pred             CCCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccC-CCCCccceeEEcccchhcCChhheEEEEEEE
Confidence            456789999999887543   4678887754  331   112343333 25799999988876  33 346789999999


Q ss_pred             ccc
Q 016987          335 FLL  337 (379)
Q Consensus       335 ~d~  337 (379)
                      ...
T Consensus        83 ~~~   85 (158)
T cd08398          83 VKG   85 (158)
T ss_pred             Eec
Confidence            764

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=90.74  E-value=3  Score=40.37  Aligned_cols=96  Identities=11%  Similarity=0.213  Sum_probs=67.8

Q ss_pred             EEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEec-------CCCCceEEEEEEEcccC
Q 016987          266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAE-------DKETQSLIFEVYIFLLF  338 (379)
Q Consensus       266 L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~-------~~~~~~L~i~V~D~d~~  338 (379)
                      +.+.|.+|+|.+...   +..-.+..++.+ ....|..+..+-.|.||......+.       ...+.++++++|.-|..
T Consensus         2 ivl~i~egr~F~~~~---~~~~vv~a~~ng-~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~   77 (340)
T PF12416_consen    2 IVLSILEGRNFPQRP---RHPIVVEAKFNG-ESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGS   77 (340)
T ss_pred             EEEEEecccCCCCCC---CccEEEEEEeCC-ceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCC
Confidence            578899999998652   234456667776 6788888888899999998877763       23467899999987721


Q ss_pred             C--C------------------------CcEEEcccC--CCCceeeEEEEEEEEE
Q 016987          339 F--P------------------------AQWVPILNS--EYGAALSNMHLIYIYK  365 (379)
Q Consensus       339 ~--~------------------------d~w~~L~~~--~~g~~~g~i~l~~~~~  365 (379)
                      .  +                        -.||+|++.  +..+.+.++.+.++..
T Consensus        78 ~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie  132 (340)
T PF12416_consen   78 TGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIE  132 (340)
T ss_pred             CCcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEe
Confidence            1  1                        179999977  4444455666666554

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=89.83  E-value=2.8  Score=36.58  Aligned_cols=73  Identities=27%  Similarity=0.335  Sum_probs=48.2

Q ss_pred             CcEEEEEEeecccccccccCCCCCcEEEEEE--cCe---eeEeeeccCCCCCCeEeeEEEEEe--cC-CCCceEEEEEEE
Q 016987          263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHI--KPL---FKVKTNVVDNNLNPVWNQTFELIA--ED-KETQSLIFEVYI  334 (379)
Q Consensus       263 ~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~--~~~---~~~~T~v~~~tlnP~Wne~f~f~v--~~-~~~~~L~i~V~D  334 (379)
                      ...++|++.++.++...+  ..++-|+.+.+  +..   ....|+...-+.++.|||...|++  .+ +....|.+++|+
T Consensus         7 ~~~f~i~i~~~~~~~~~~--~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~   84 (173)
T cd08693           7 EEKFSITLHKISNLNAAE--RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYE   84 (173)
T ss_pred             CCCEEEEEEEeccCccCC--CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEE
Confidence            346799999999987522  33566766543  431   123455444456799999988865  33 346789999998


Q ss_pred             ccc
Q 016987          335 FLL  337 (379)
Q Consensus       335 ~d~  337 (379)
                      ...
T Consensus        85 ~~~   87 (173)
T cd08693          85 VSK   87 (173)
T ss_pred             ecc
Confidence            754

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=88.67  E-value=1.7  Score=38.40  Aligned_cols=53  Identities=23%  Similarity=0.273  Sum_probs=38.7

Q ss_pred             eeEeeeccCCCCCCeEeeEEEEEecC--CCCceEEEEEEEcccCCCC-------cEEEcccC
Q 016987          297 FKVKTNVVDNNLNPVWNQTFELIAED--KETQSLIFEVYIFLLFFPA-------QWVPILNS  349 (379)
Q Consensus       297 ~~~~T~v~~~tlnP~Wne~f~f~v~~--~~~~~L~i~V~D~d~~~~d-------~w~~L~~~  349 (379)
                      ..++|.+...+.+|.|+|++.+.+..  ..+..|.+++++.-.-.+.       .|+||.++
T Consensus        53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~~  114 (189)
T cd08695          53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMRE  114 (189)
T ss_pred             ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeeccc
Confidence            35788888889999999999888743  3466788888764332222       59999855

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=87.67  E-value=4.3  Score=36.04  Aligned_cols=53  Identities=15%  Similarity=0.134  Sum_probs=38.3

Q ss_pred             eeEeeeccCCCCCCeEeeEEEEEecC--CCCceEEEEEEEcccC-CCC--------cEEEcccC
Q 016987          297 FKVKTNVVDNNLNPVWNQTFELIAED--KETQSLIFEVYIFLLF-FPA--------QWVPILNS  349 (379)
Q Consensus       297 ~~~~T~v~~~tlnP~Wne~f~f~v~~--~~~~~L~i~V~D~d~~-~~d--------~w~~L~~~  349 (379)
                      ..++|.+...+.+|.|+|++.+.+..  ..+..|.+++++.-.- .+|        .|+||.+.
T Consensus        53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~~~  116 (196)
T cd08694          53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLMQE  116 (196)
T ss_pred             eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeeecc
Confidence            46788888888899999999887743  3567899999774321 112        59999843

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=87.65  E-value=2.9  Score=32.32  Aligned_cols=63  Identities=22%  Similarity=0.316  Sum_probs=44.9

Q ss_pred             CCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEccc--CCCCcEEEccc
Q 016987          283 GKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLL--FFPAQWVPILN  348 (379)
Q Consensus       283 g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~--~~~d~w~~L~~  348 (379)
                      |.++-.+.+.+++.....|.-.. ..+..|++.|.+.+..  .+.|.|+||-+|.  +..-..+.|.+
T Consensus         7 ~~~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdR--sRELEI~VywrD~RslCav~~lrLEd   71 (98)
T cd08687           7 GCSEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELER--SRELEIAVYWRDWRSLCAVKFLKLED   71 (98)
T ss_pred             cccceEEEEEEcCeEEeeccccc-cccccccceeEEEeec--ccEEEEEEEEecchhhhhheeeEhhh
Confidence            44777888888886667776543 3578999999999874  5789999986654  22335666654

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=87.39  E-value=3.8  Score=35.95  Aligned_cols=65  Identities=17%  Similarity=0.260  Sum_probs=37.8

Q ss_pred             eeEeeeccCCCCCCeEeeEEEEEecCC--CCceEEEEEEEcccCCCC--------cEEEcccCCCCc--eeeEEEEEEE
Q 016987          297 FKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLIFEVYIFLLFFPA--------QWVPILNSEYGA--ALSNMHLIYI  363 (379)
Q Consensus       297 ~~~~T~v~~~tlnP~Wne~f~f~v~~~--~~~~L~i~V~D~d~~~~d--------~w~~L~~~~~g~--~~g~i~l~~~  363 (379)
                      ..+.|.+..++.+|.|+|++.+.+...  ....|.+++++...-.+.        .|+||.+  .|.  ..|+..|-+.
T Consensus        59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~--~g~~i~dg~~~L~v~  135 (184)
T PF14429_consen   59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD--NGTIIQDGEHELPVY  135 (184)
T ss_dssp             S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB---TS-B--SEEEEEEEE
T ss_pred             eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee--CCeEecCCCEEEEEE
Confidence            457788888889999999999888542  456899999986653321        7999986  454  4666666664

>KOG2238 consensus Uncharacterized conserved protein TEX2, contains PH domain [General function prediction only]

Probab=86.25  E-value=0.24  Score=51.82  Aligned_cols=90  Identities=27%  Similarity=0.409  Sum_probs=73.0

Q ss_pred             cchHHHHHHHHhHchhhHHH--HHHHHHHhHHHHHHhcC-CCCcceEEEeEEecCCCCCeeeeeEEEecCC-CeEEEEEE
Q 016987           68 EQVKWLNKELSKLWPFVADA--AELVIKESVEPLLEEYR-PPGITSLKFSKLSLGNVAPKIEGIRVQSLKQ-GQITMDID  143 (379)
Q Consensus        68 E~~eWlN~~l~~~Wp~~~~~--~~~~i~~~l~~~l~~~~-p~~~~~i~~~~~~lG~~pP~i~~ir~~~~~~-~~~~ld~~  143 (379)
                      +.+-|||.++.++.--+.+.  ..+...+.++.++...| |++++.+-..+++-|+.||.|++.++..... +..-++.|
T Consensus       334 ~~T~~ln~~~~rl~~~~k~~~~~~n~~~~r~q~~y~~~Rt~~~~eelv~~~vd~~nl~p~i~~~~~l~~~~~gv~~~~~d  413 (795)
T KOG2238|consen  334 EGTLALNAVLGRLFLDLKQPTDLKNSSHERIQRIYSKMRTPSYIEELVCRKVDTGNLPPLITSTRVLPVEMSGVWAFEID  413 (795)
T ss_pred             hhhhhhhhhcchhhhcccCCccccchHHHHHHHHHhccccchhhhhhhhhhhhhcCCccccccceeEEeeccccccCccc
Confidence            56789999999988544332  56678888999998876 7799999999999999999999999987544 44568899


Q ss_pred             EEEcCCCcEEEEEE
Q 016987          144 FRWGGDPSIILGVE  157 (379)
Q Consensus       144 ~~~~g~~~i~l~~~  157 (379)
                      +.|.||..+.++..
T Consensus       414 i~y~~d~~~~i~~~  427 (795)
T KOG2238|consen  414 IEYRGDLTIIIETR  427 (795)
T ss_pred             eeeccccccccccc
Confidence            99999877666544

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=85.60  E-value=5.7  Score=33.77  Aligned_cols=98  Identities=15%  Similarity=0.177  Sum_probs=55.9

Q ss_pred             cEEEEEEeecccccccccCCCCCcEEEEEE--cCe---eeEeeeccCCCCCCeEeeEEEEEe--cC-CCCceEEEEEEEc
Q 016987          264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHI--KPL---FKVKTNVVDNNLNPVWNQTFELIA--ED-KETQSLIFEVYIF  335 (379)
Q Consensus       264 g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~--~~~---~~~~T~v~~~tlnP~Wne~f~f~v--~~-~~~~~L~i~V~D~  335 (379)
                      ..++|++....+....+ ....+-|+.+.+  +..   ....|+......++.|||...|.+  .+ +....|.+++|+.
T Consensus         8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~   86 (156)
T cd08380           8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV   86 (156)
T ss_pred             CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence            35677787777765411 223566666643  431   123444333346799999988875  33 3467899999998


Q ss_pred             ccCCC--C---cEE--EcccCCCCceeeEEEEEE
Q 016987          336 LLFFP--A---QWV--PILNSEYGAALSNMHLIY  362 (379)
Q Consensus       336 d~~~~--d---~w~--~L~~~~~g~~~g~i~l~~  362 (379)
                      +..+.  +   +|.  +|.+.+.-=..|...+.+
T Consensus        87 ~~~~~~~~~~iG~~~~~lFd~~~~L~~G~~~l~l  120 (156)
T cd08380          87 SEPGSKKEVPLGWVNVPLFDYKGKLRQGMITLNL  120 (156)
T ss_pred             ecCCCCcceEEEEEeEEeEcccCcEecCCEEEec
Confidence            76542  2   444  455443222244544444

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=85.08  E-value=4.8  Score=34.38  Aligned_cols=77  Identities=8%  Similarity=0.056  Sum_probs=51.6

Q ss_pred             CCcEEEEEEeecccccccccC--CCCCcEEE--EEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCC-------------
Q 016987          262 PQGKVAVTIVKANNLKNMEMI--GKSDPYAV--VHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKE-------------  324 (379)
Q Consensus       262 ~~g~L~V~V~~A~~L~~~d~~--g~sdPyv~--v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~-------------  324 (379)
                      ..--|.++|..++-....-..  +..+.-..  +.+++ ++++|+.+..+.+|.++|.|.|.+....             
T Consensus         7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~-QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~   85 (156)
T PF15627_consen    7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRG-QRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI   85 (156)
T ss_pred             CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecC-ceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence            445678888888765432211  33344444  44566 7999999999999999999999885321             


Q ss_pred             CceEEEEEEEcccCC
Q 016987          325 TQSLIFEVYIFLLFF  339 (379)
Q Consensus       325 ~~~L~i~V~D~d~~~  339 (379)
                      .+.+.+.|.-.|..+
T Consensus        86 ~~pihivli~~d~~~  100 (156)
T PF15627_consen   86 SDPIHIVLIRTDPSG  100 (156)
T ss_pred             CCceEEEEEEecCCC
Confidence            345777777666543

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=83.23  E-value=17  Score=30.35  Aligned_cols=63  Identities=21%  Similarity=0.319  Sum_probs=39.2

Q ss_pred             EeeeccCCC-CCCeEeeEEEEEe--cC-CCCceEEEEEEEcccCCCC-------cEE--EcccCCCCce-eeEEEEEE
Q 016987          299 VKTNVVDNN-LNPVWNQTFELIA--ED-KETQSLIFEVYIFLLFFPA-------QWV--PILNSEYGAA-LSNMHLIY  362 (379)
Q Consensus       299 ~~T~v~~~t-lnP~Wne~f~f~v--~~-~~~~~L~i~V~D~d~~~~d-------~w~--~L~~~~~g~~-~g~i~l~~  362 (379)
                      ..|+...-+ .++.|||...|.+  .+ +....|.++||+.+....+       +|.  +|.+. .|.. .|...|.+
T Consensus        22 ~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~-~~~L~~G~~~L~l   98 (142)
T PF00792_consen   22 QSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY-RGQLRQGPQKLSL   98 (142)
T ss_dssp             EE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T-TSBBEEEEEEEE-
T ss_pred             eeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC-CCcccCCCEEEEE
Confidence            356555555 7899999988876  33 4567899999998876554       565  45544 3433 46655555

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=82.98  E-value=6.8  Score=30.71  Aligned_cols=71  Identities=17%  Similarity=0.172  Sum_probs=43.1

Q ss_pred             EEEEEeecccccccccCCCCCcEEEEEE--cCe---eeEeeeccCCCCCCeEeeEEEEEec--C-CCCceEEEEEEEcc
Q 016987          266 VAVTIVKANNLKNMEMIGKSDPYAVVHI--KPL---FKVKTNVVDNNLNPVWNQTFELIAE--D-KETQSLIFEVYIFL  336 (379)
Q Consensus       266 L~V~V~~A~~L~~~d~~g~sdPyv~v~~--~~~---~~~~T~v~~~tlnP~Wne~f~f~v~--~-~~~~~L~i~V~D~d  336 (379)
                      +.+.+...++.........++-|+.+.+  ++.   ....|+.+.-...+.|||...|++.  + +....|.+++|+..
T Consensus        13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~   91 (100)
T smart00142       13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK   91 (100)
T ss_pred             eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence            4556666666544332233577877754  331   1234544444556899999888753  3 34678999999864

Outlier of C2 family.

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=82.78  E-value=6.7  Score=33.66  Aligned_cols=81  Identities=15%  Similarity=0.121  Sum_probs=48.6

Q ss_pred             CCCCcEEEEEE--cCe---eeEeeeccCCCCCCeEeeEEEEEec--C-CCCceEEEEEEEcccCCCC-----cEEEcccC
Q 016987          283 GKSDPYAVVHI--KPL---FKVKTNVVDNNLNPVWNQTFELIAE--D-KETQSLIFEVYIFLLFFPA-----QWVPILNS  349 (379)
Q Consensus       283 g~sdPyv~v~~--~~~---~~~~T~v~~~tlnP~Wne~f~f~v~--~-~~~~~L~i~V~D~d~~~~d-----~w~~L~~~  349 (379)
                      ..+|-|+.+.+  +..   ....|+.+.-+..+.|||...|++.  + +.+..|.++|||.+.-++.     .-++|.+.
T Consensus        28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~  107 (159)
T cd08397          28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK  107 (159)
T ss_pred             CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence            34677777654  321   1234444444566889999888763  3 3467899999998754333     34466665


Q ss_pred             CCCceeeEEEEEEE
Q 016987          350 EYGAALSNMHLIYI  363 (379)
Q Consensus       350 ~~g~~~g~i~l~~~  363 (379)
                      +.-=..|...+.+-
T Consensus       108 ~g~Lr~G~~~l~lw  121 (159)
T cd08397         108 DGTLRRGRQKLRVW  121 (159)
T ss_pred             CCcEecCCEEEEEE
Confidence            43333555555554

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	379
3hn8_A	296	Crystal Structure Of Synaptotagmin Length = 296		8e-06
1dqv_A	296	Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt		9e-06
2chd_A	142	Crystal Structure Of The C2a Domain Of Rabphilin-3a		6e-05
2k3h_A	140	Structural Determinants For Ca2+ And Pip2 Binding B		7e-05
3kwt_A	148	Munc13-1 C2b-Domain, Calcium-Free Length = 148		9e-05
2uzp_A	144	Crystal Structure Of The C2 Domain Of Human Protein		2e-04
1dsy_A	139	C2 Domain From Protein Kinase C (Alpha) Complexed W		4e-04
3gpe_A	137	Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain		4e-04
2d8k_A	141	Solution Structure Of The First C2 Domain Of Synapt		6e-04

>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 50/101 (49%), Gaps = 11/101 (10%)
Query: 243 RIVVPIGGIPVDTSELE-----LKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHI---- 293
           R ++  G    D  EL      L   G + VTI+KA+NLK M++ G SDPY    +    
Sbjct: 127 RDILEGGSEKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEG 186
Query: 294 KPLFKVKTNVVDNNLNPVWNQT--FELIAEDKETQSLIFEV 332
           + L K KT++  N LNP +N+   F++  E  E   L   V
Sbjct: 187 RRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAV 227

>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 11/97 (11%)
Query: 243 RIVVPIGGIPVDTSELE-----LKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHI---- 293
           R ++  G    D  EL      L   G + VTI+KA+NLK M++ G SDPY    +    
Sbjct: 126 RDILEGGSEKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEG 185
Query: 294 KPLFKVKTNVVDNNLNPVWNQT--FELIAEDKETQSL 328
           + L K KT++  N LNP +N+   F++  E  E   L
Sbjct: 186 RRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGL 222

>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a Length = 142

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTF 316
           +    +  TI++A  LK M+  G +DPY  +H+ P      K++T  + N  NPVWN+T 
Sbjct: 26  QDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETL 85
Query: 317 E---LIAEDKETQSLIFEV 332
           +   +  ED + ++L   V
Sbjct: 86  QYHGITEEDMQRKTLRISV 104

>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The C2a Domain Of Rabphilin-3a Length = 140

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTF 316
           +    +  TI++A  LK M+  G +DPY  +H+ P      K++T  + N  NPVWN+T 
Sbjct: 24  QDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETL 83
Query: 317 E---LIAEDKETQSLIFEV 332
           +   +  ED + ++L   V
Sbjct: 84  QYHGITEEDMQRKTLRISV 102

>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFEL 318
           K   K+++T+V A  L+  +  G SDPY  V +    K +T  +  NLNPVW + F  
Sbjct: 14  KWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKT-KKRTKTIYGNLNPVWEENFHF 70

>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase C Gamma. Length = 144

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTF 316
           ++ VT+ +A NL  M+  G SDPY  + + P    L K KT  V   LNPVWN+TF
Sbjct: 21  EIHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETF 76

>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQ--TFEL 318
           K+ VT+  A NL  M+  G SDPY  + + P      K KT  + + LNP WN+  TF+L
Sbjct: 18  KLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKL 77
Query: 319 IAEDKETQ------------------SLIFEVYIFLLFFPAQWVPILNSEYG 352
              DK+ +                  SL F V   +    + W  +LN E G
Sbjct: 78  KPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMPASGWYKLLNQEEG 129

>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQ--TFEL 318
           K+ VT+  A NL  M+  G SDPY  + + P      K KT  + + LNP WN+  TF+L
Sbjct: 17  KLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKL 76
Query: 319 IAEDKETQ------------------SLIFEVYIFLLFFPAQWVPILNSEYG 352
              DK+ +                  SL F V   +    + W  +LN E G
Sbjct: 77  KPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMPASGWYKLLNQEEG 128

>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTF 316
           +  + V I+KA  L   +  G SDP+  +++ P    K++T V   NLNP WN+TF
Sbjct: 25  ESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETF 80

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	379
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	9e-24
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	3e-23
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	3e-22
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	4e-22
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	9e-22
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	2e-21
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	4e-21
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	5e-21
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	4e-20
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	2e-19
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	2e-17
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	5e-16
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	8e-16
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	2e-15
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	4e-14
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	3e-15
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	6e-15
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	4e-14
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	7e-15
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	1e-14
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	2e-14
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	2e-14
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	3e-14
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	3e-14
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	4e-14
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	5e-14
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	5e-14
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	1e-13
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	3e-13
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	8e-13
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	1e-12
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	1e-12
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	2e-12
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	2e-12
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	7e-12
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	8e-12
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	1e-11
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	1e-11
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	1e-08
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	3e-07
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	8e-06
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	2e-05

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score = 94.3 bits (235), Expect = 9e-24
 Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 1/73 (1%)

Query: 261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIA 320
            P G + V +V A  L++ + +   DPY  +  +   +           P WN+TF    
Sbjct: 7   GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTV 66

Query: 321 EDKETQSLIFEVY 333
            +  T+ L  +++
Sbjct: 67  SEGTTE-LKAKIF 78

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score =  100 bits (249), Expect = 3e-23
 Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 5/87 (5%)

Query: 252 PVDTSELELKPQGKVAVTIVKANNLKN---MEMIGKSDPYAVVHI--KPLFKVKTNVVDN 306
           P     +E +   K  V +++A  +      +M+   DPY  + I   P  + +T   +N
Sbjct: 6   PYQHIIVEHQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNN 65

Query: 307 NLNPVWNQTFELIAEDKETQSLIFEVY 333
           ++NPVWN+TFE I +  +   L   + 
Sbjct: 66  DINPVWNETFEFILDPNQENVLEITLM 92

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 90.1 bits (224), Expect = 3e-22
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 5/75 (6%)

Query: 264 GKVAVTIVKANNLKN---MEMIGKSDPYAVVHI--KPLFKVKTNVVDNNLNPVWNQTFEL 318
            K  V +++A  +      +M+   DPY  + I   P  + +T   +N++NPVWN+TFE 
Sbjct: 3   HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62

Query: 319 IAEDKETQSLIFEVY 333
           I +  +   L   + 
Sbjct: 63  ILDPNQENVLEITLM 77

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score = 91.1 bits (226), Expect = 4e-22
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 6/82 (7%)

Query: 257 ELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP-----LFKVKTNVVDNNLNPV 311
           EL       V V ++    L   +++G SDPY  V +       L  V+T  +  +LNP 
Sbjct: 1   ELHNDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPK 60

Query: 312 WNQTFELIAEDKETQSLIFEVY 333
           WN+         +   ++FEV+
Sbjct: 61  WNEEILFRVLP-QRHRILFEVF 81

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score = 88.9 bits (221), Expect = 9e-22
 Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 2/78 (2%)

Query: 256 SELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQT 315
           S  ++K  G + V ++KA +L   +  GKSDP+ ++ +    +++T+ V  NLNP WN+ 
Sbjct: 5   SSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGN-DRLQTHTVYKNLNPEWNKV 63

Query: 316 FELIAEDKETQSLIFEVY 333
           F    +D     L   V+
Sbjct: 64  FTFPIKDIH-DVLEVTVF 80

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score = 88.3 bits (219), Expect = 2e-21
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 2/84 (2%)

Query: 250 GIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLN 309
            +     +   K   K+++T+V A  L+  +  G SDPY  V +    K +T  +  NLN
Sbjct: 3   AVKQSVLDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGK-TKKRTKTIYGNLN 61

Query: 310 PVWNQTFELIAEDKETQSLIFEVY 333
           PVW + F     +  +  +   V 
Sbjct: 62  PVWEENFHFECHN-SSDRIKVRVL 84

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 87.4 bits (217), Expect = 4e-21
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 3/70 (4%)

Query: 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKV-KTNVVDNNLNPVWNQTFELIAEDK 323
           K+ +T++ A NL   +     DP+A + +    +   T+ V N L+P WNQ ++L     
Sbjct: 6   KIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDL--YVG 63

Query: 324 ETQSLIFEVY 333
           +T S+   V+
Sbjct: 64  KTDSITISVW 73

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score = 87.5 bits (217), Expect = 5e-21
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 6/78 (7%)

Query: 261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP-----LFKVKTNVVDNNLNPVWNQT 315
           +    V V ++    L   +++G SDPY  V +       L  V+T  +  +LNP WN+ 
Sbjct: 17  ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEE 76

Query: 316 FELIAEDKETQSLIFEVY 333
                  ++   L+FEV+
Sbjct: 77  ILFRVHPQQ-HRLLFEVF 93

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score = 84.8 bits (210), Expect = 4e-20
 Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 5/76 (6%)

Query: 261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELI- 319
              G + V +  A+N+   +  GK DP   V  K   K KT  VDN LNPVWN+  E   
Sbjct: 4   GSSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKD-EKKKTKKVDNELNPVWNEILEFDL 61

Query: 320 --AEDKETQSLIFEVY 333
                  + SL   V 
Sbjct: 62  RGIPLDFSSSLGIIVK 77

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score = 83.8 bits (207), Expect = 2e-19
 Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 3/85 (3%)

Query: 249 GGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNL 308
                  S   L  + ++ +T++ A   +N +      PY  V +      KT   +N  
Sbjct: 21  DSGSQLGSMGSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDG-QSKKTEKCNNTN 79

Query: 309 NPVWNQTFELIAEDKETQSLIFEVY 333
           +P W Q   +I        L F V+
Sbjct: 80  SPKWKQPLTVIVTPV--SKLHFRVW 102

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 77.0 bits (190), Expect = 2e-17
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 7/78 (8%)

Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFE- 317
              +  TI++A  LK M+  G +DPY  +H+ P      K++T  + N  NPVWN+T + 
Sbjct: 28  NSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQY 87

Query: 318 --LIAEDKETQSLIFEVY 333
             +  ED + ++L   V 
Sbjct: 88  HGITEEDMQRKTLRISVC 105

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 73.2 bits (180), Expect = 8e-16
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 5/76 (6%)

Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFEL 318
           +  + V +  A NL  M+  G SDPY  + + P      K KT  +  +LNP WN+TF  
Sbjct: 30  REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRF 89

Query: 319 -IAEDKETQSLIFEVY 333
            + E  + + L  E++
Sbjct: 90  QLKESDKDRRLSVEIW 105

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 75.3 bits (185), Expect = 2e-15
 Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 10/122 (8%)

Query: 219 IPGIADMIDDTVDSIITDMLQWPHRIVVPIGGIPVDTSELELKPQ-GKVAVTIVKANNLK 277
           +  + ++ +   D  +   +         +G +      L   P  G + VTI+KA+NLK
Sbjct: 109 LDNLLELAEQPPDRPLWRDILEGGSEKADLGELNF---SLCYLPTAGLLTVTIIKASNLK 165

Query: 278 NMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQT--FELIAEDKETQSLIFE 331
            M++ G SDPY    +      L K KT++  N LNP +N+   F++  E  E   L   
Sbjct: 166 AMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIA 225

Query: 332 VY 333
           V 
Sbjct: 226 VV 227

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 71.4 bits (175), Expect = 4e-14
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 4/77 (5%)

Query: 261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTF-- 316
               ++ V I++A +L   +  G SDPY  +++ P    K +T V    LNP++N+TF  
Sbjct: 17  YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQF 76

Query: 317 ELIAEDKETQSLIFEVY 333
            +   +   + L F VY
Sbjct: 77  SVPLAELAQRKLHFSVY 93

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 70.8 bits (174), Expect = 3e-15
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 6/77 (7%)

Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQT--F 316
              + V I+KA NLK M++ G SDPY  V +      + K KT     NLNP++N++  F
Sbjct: 15  ANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAF 74

Query: 317 ELIAEDKETQSLIFEVY 333
           ++  E     ++I  V 
Sbjct: 75  DIPTEKLRETTIIITVM 91

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 73.3 bits (180), Expect = 6e-15
 Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 7/114 (6%)

Query: 227 DDTVDSIITDMLQWPHRIVVPIGGIPVDTSELELKPQ-GKVAVTIVKANNLKNMEMIGKS 285
                 +  +              +      L   P  GK+ V I++A NLK M++ G S
Sbjct: 112 TVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLS 171

Query: 286 DPYAVVHIKP----LFKVKTNVVDNNLNPVWNQT--FELIAEDKETQSLIFEVY 333
           DPY  +H+      L K KT +  N LNP +N++  FE+  E  +   ++  V 
Sbjct: 172 DPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVL 225

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 71.0 bits (174), Expect = 4e-14
 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 4/76 (5%)

Query: 262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQT--FE 317
              ++ V I++A  L  ++M G SDPY  V + P    K +T V    LNPV+N+   F+
Sbjct: 17  QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFK 76

Query: 318 LIAEDKETQSLIFEVY 333
           +   +   ++L+  VY
Sbjct: 77  VPYSELAGKTLVMAVY 92

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 70.5 bits (173), Expect = 7e-15
 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 11/96 (11%)

Query: 249 GGIPVDTSELELK-----PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKV 299
           GGIP    EL +          + V ++KA +L   ++ G SDPY  V++      + K 
Sbjct: 10  GGIPSGRGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKK 69

Query: 300 KTNVVDNNLNPVWNQT--FELIAEDKETQSLIFEVY 333
           KT+V     N V+N+   F++  E  E  S+ F V 
Sbjct: 70  KTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVL 105

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 70.1 bits (172), Expect = 1e-14
 Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 6/77 (7%)

Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQT--F 316
            GK+ V I++A NLK M++ G SDPY  +H+      L K KT +  N LNP +N++  F
Sbjct: 24  AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSF 83

Query: 317 ELIAEDKETQSLIFEVY 333
           E+  E  +   ++  V 
Sbjct: 84  EVPFEQIQKVQVVVTVL 100

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 68.9 bits (169), Expect = 2e-14
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 5/76 (6%)

Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFE--- 317
           +  + V I+KA  L   +  G SDP+  +++ P    K++T V   NLNP WN+TF    
Sbjct: 25  ESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEG 84

Query: 318 LIAEDKETQSLIFEVY 333
              E    + L  +V 
Sbjct: 85  FPYEKVVQRILYLQVL 100

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 69.4 bits (170), Expect = 2e-14
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 4/75 (5%)

Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFE--L 318
             ++ V I++A  L  ++M G SDPY  V + P    K +T V    LNPV+N+ F   +
Sbjct: 41  NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 100

Query: 319 IAEDKETQSLIFEVY 333
              +   ++L+  VY
Sbjct: 101 PYSELGGKTLVMAVY 115

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 68.5 bits (168), Expect = 3e-14
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 7/78 (8%)

Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFE- 317
             ++ VTI+ A +L + E     +PY  ++  P      K +T  V   L P WNQTF  
Sbjct: 20  GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIY 79

Query: 318 --LIAEDKETQSLIFEVY 333
             +   +   + L   ++
Sbjct: 80  SPVHRREFRERMLEITLW 97

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 68.5 bits (168), Expect = 3e-14
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 4/75 (5%)

Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFE--L 318
             ++ V I++A  L  ++M G SDPY  V + P    K +T V    LNPV+N+ F   +
Sbjct: 33  NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 92

Query: 319 IAEDKETQSLIFEVY 333
              +   ++L+  VY
Sbjct: 93  PYSELGGKTLVMAVY 107

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 68.5 bits (167), Expect = 4e-14
 Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 12/90 (13%)

Query: 254 DTSELELKPQGKVAVTIVKANNLKNMEMIGK----------SDPYAVVHIKPLFKVKTNV 303
             S   +K  G + V I +A  L+      +           DPY  V +  +   +T+ 
Sbjct: 19  SMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTST 78

Query: 304 VDNNLNPVWNQTFELIAEDKETQSLIFEVY 333
                 P +N+ F     D     L   V+
Sbjct: 79  KQKTNKPTYNEEFCANVTD--GGHLELAVF 106

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 68.6 bits (168), Expect = 5e-14
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQT--F 316
           QG + V I++  +L  M+  G SDP+  + +KP      K KT +    LNP +N+   +
Sbjct: 36  QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY 95

Query: 317 ELIAEDKETQSLIFEVY 333
           ++   D   +SL   V+
Sbjct: 96  DIKHSDLAKKSLDISVW 112

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 67.3 bits (165), Expect = 5e-14
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 7/78 (8%)

Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFE- 317
             ++ VTI+ A +L + E     +PY  ++  P      K +T  V   L P WNQTF  
Sbjct: 17  GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIY 76

Query: 318 --LIAEDKETQSLIFEVY 333
             +   +   + L   ++
Sbjct: 77  SPVHRREFRERMLEITLW 94

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 66.7 bits (163), Expect = 1e-13
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 16/87 (18%)

Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP-------------LFKVKTNVVDNNLN 309
            G + + I++A NL   +  G SDP+  V++ P              +K +T  V  +LN
Sbjct: 17  LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLN 76

Query: 310 PVWNQTFE---LIAEDKETQSLIFEVY 333
           P WNQT     +  E    ++L   V+
Sbjct: 77  PEWNQTVIYKSISMEQLMKKTLEVTVW 103

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 65.4 bits (160), Expect = 3e-13
 Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 7/78 (8%)

Query: 263 QGKVAVTIVKANNLKNM-EMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTF- 316
              + V + + + L    E   +S+PY   ++ P      K KT++  + +NP++++T  
Sbjct: 22  TQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLR 81

Query: 317 -ELIAEDKETQSLIFEVY 333
            E+       ++L F V+
Sbjct: 82  YEIPESLLAQRTLQFSVW 99

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 64.8 bits (158), Expect = 8e-13
 Identities = 14/93 (15%), Positives = 34/93 (36%), Gaps = 12/93 (12%)

Query: 253 VDTSELELK-----PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL-----FKVKTN 302
           V  + +++         + A+ I++ +NL  +           V + P         +T 
Sbjct: 27  VGATRIQIALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTR 86

Query: 303 VVDNNLNPVWNQTFE--LIAEDKETQSLIFEVY 333
            +D +   V+N+ F   +       ++L  +V 
Sbjct: 87  PLDASDTLVFNEVFWVSMSYPALHQKTLRVDVC 119

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 63.9 bits (156), Expect = 1e-12
 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 7/77 (9%)

Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFE- 317
           + K+ V +    NL        SDPY  +++ P      + KT+V    LNPV++Q+F+ 
Sbjct: 23  RNKLIVVVHACRNLIAFSE-DGSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDF 81

Query: 318 -LIAEDKETQSLIFEVY 333
            +   + + ++L   V 
Sbjct: 82  SVSLPEVQRRTLDVAVK 98

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 63.5 bits (155), Expect = 1e-12
 Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 8/76 (10%)

Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL---FKVKTNVVDNNLNPVWNQTFE-- 317
           + ++ VT ++A         G  D Y    +       + +T +    L+  W +     
Sbjct: 25  KAELFVTRLEA---VTSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLP 81

Query: 318 LIAEDKETQSLIFEVY 333
           L  E+  T +L   + 
Sbjct: 82  LAEEELPTATLTLTLR 97

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 63.1 bits (154), Expect = 2e-12
 Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 8/78 (10%)

Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFE- 317
            G + + ++   +L   +     +PY   ++ P      K KT +     NP +N+    
Sbjct: 19  NGTLFIMVMHIKDLVTEDG-ADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVY 77

Query: 318 --LIAEDKETQSLIFEVY 333
                E    + L   V 
Sbjct: 78  SGYSKETLRQRELQLSVL 95

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 62.9 bits (153), Expect = 2e-12
 Identities = 13/81 (16%), Positives = 28/81 (34%), Gaps = 13/81 (16%)

Query: 264 GKVAVTIVKANNLKNMEMIGK-----------SDPYAVVHIKPLFKVKTNVVDNNLNPVW 312
           G + + I +A +LK      +            DPY  +++      +T       +P W
Sbjct: 6   GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAW 65

Query: 313 NQTFELIAEDKETQSLIFEVY 333
           +  F     +   + +   V+
Sbjct: 66  HDEFVTDVCN--GRKIELAVF 84

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 61.6 bits (150), Expect = 7e-12
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 6/77 (7%)

Query: 263 QGKVAVTIVKANNLKNMEMIGK-SDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFE-- 317
           +    V I +A  L  M+     SDPY  + I P    KVKT V+   L+P +++TF   
Sbjct: 21  RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFY 80

Query: 318 -LIAEDKETQSLIFEVY 333
            +     +  +L F + 
Sbjct: 81  GIPYTQIQELALHFTIL 97

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 61.6 bits (150), Expect = 8e-12
 Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 6/76 (7%)

Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFEL 318
              + + I++   L + +  G  DPY  + + P    L   KT  V +  +P +++ F  
Sbjct: 26  DRVLLLHIIEGKGLISKQP-GTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFF 84

Query: 319 -IAEDKETQSLIFEVY 333
            + E+ + + L+  V+
Sbjct: 85  PVQEEDDQKRLLVTVW 100

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 60.9 bits (148), Expect = 1e-11
 Identities = 14/82 (17%), Positives = 32/82 (39%), Gaps = 11/82 (13%)

Query: 263 QGKVAVTIVKANNLKNMEMI-------GKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWN 313
              + V +++A +L               S+PY  + + P      +T V      PV+ 
Sbjct: 25  HNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFE 84

Query: 314 QTF--ELIAEDKETQSLIFEVY 333
           + +  E+   + + ++L+  V 
Sbjct: 85  ERYTFEIPFLEAQRRTLLLTVV 106

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 61.3 bits (149), Expect = 1e-11
 Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 6/76 (7%)

Query: 263 QGKVAVTIVKANNLKNMEM-IGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFE 317
           +G++ V +++A +L           PY  V++      + K KT +    L+P++ Q+  
Sbjct: 29  KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLV 88

Query: 318 LIAEDKETQSLIFEVY 333
              E  + + L   V+
Sbjct: 89  -FDESPQGKVLQVIVW 103

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 55.7 bits (133), Expect = 1e-08
 Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 3/68 (4%)

Query: 267 AVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFEL-IAEDKET 325
            V+  +A +L   +    +D Y  V      + +T VV NN NP W    +         
Sbjct: 397 VVSNFRAEHL-WGDYTTATDAYLKVFFGGQ-EFRTGVVWNNNNPRWTDKMDFENVLLSTG 454

Query: 326 QSLIFEVY 333
             L  +V+
Sbjct: 455 GPLRVQVW 462

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 48.4 bits (115), Expect = 3e-07
 Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 6/66 (9%)

Query: 268 VTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQS 327
           V + KA      E   K + Y  + ++   K  T +      P W Q F       +   
Sbjct: 9   VGVKKAKFDGAQE---KFNTYVTLKVQN-VKSTT-IAVRGSQPSWEQDFMFEINRLDLG- 62

Query: 328 LIFEVY 333
           L  EV+
Sbjct: 63  LTVEVW 68

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score = 46.5 bits (110), Expect = 2e-06
 Identities = 15/88 (17%), Positives = 37/88 (42%), Gaps = 12/88 (13%)

Query: 259 ELKPQG---KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPV-WNQ 314
            L P+G    + V +   + L+     G++D  A V  +      + V++N  +   +++
Sbjct: 13  GLVPRGSHMALIVHLKTVSELR-----GRADRIAKVTFRG-QSFYSRVLENCEDVADFDE 66

Query: 315 TFE--LIAEDKETQSLIFEVYIFLLFFP 340
           TF   + +     + L  +++ +   F 
Sbjct: 67  TFRWPVASSIDRNEVLEIQIFNYSKVFS 94

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 7e-06
 Identities = 53/356 (14%), Positives = 102/356 (28%), Gaps = 88/356 (24%)

Query: 49  DLKKICGDNFPV-WISF-------PVYEQVKWLNKELSKLWPFVADAAELVI--KESVEP 98
             K  C  +F + W++         V E ++ L  ++   W   +D +  +     S++ 
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232

Query: 99  LLEEY--RPPGITSLKFSKLSLGNVAPK--IE--GIRVQSLKQGQITMDIDFRWGGDPSI 152
            L       P    L    L L NV          +  + L    +T     R      +
Sbjct: 233 ELRRLLKSKPYENCL----LVLLNVQNAKAWNAFNLSCKIL----LTT----R---FKQV 277

Query: 153 ILGVEAAMVASIPIQLKDLQVFT----------VIRVIFQ-LAEEI----PCISAVVVAL 197
              + AA    I +        T           +    Q L  E+    P   +++   
Sbjct: 278 TDFLSAATTTHISLD-HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336

Query: 198 LSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSI-ITDMLQWPHRIVV-PIG-GIPVD 254
           + +     D         LT I      I+ +++ +   +  +   R+ V P    IP  
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTI------IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390

Query: 255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQ 314
              L +      +  +V  N L    ++ K    + + I  ++                 
Sbjct: 391 LLSL-IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY----------------- 432

Query: 315 TFELIAEDKETQSL---IFEVYIFLLFFPAQWVPILNSEYGAALSNMHLIYIYKYL 367
             EL  + +   +L   I + Y     F      I               Y Y ++
Sbjct: 433 -LELKVKLENEYALHRSIVDHYNIPKTFD-SDDLIPPYLDQ---------YFYSHI 477

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510

 Score = 46.6 bits (110), Expect = 8e-06
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 1/82 (1%)

Query: 259 ELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFEL 318
           +    G++ V +++A  LK  +  GKS+PY  + +       T  + + LNP WN   + 
Sbjct: 382 KTSGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQ-SYTTRTIQDTLNPKWNFNCQF 440

Query: 319 IAEDKETQSLIFEVYIFLLFFP 340
             +D     L   ++    F P
Sbjct: 441 FIKDLYQDVLCLTLFDRDQFSP 462

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 43.8 bits (103), Expect = 2e-05
 Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 6/66 (9%)

Query: 268 VTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQS 327
           V + KA      E   K + Y  + ++   +  T +      P W Q F       +   
Sbjct: 18  VGVKKAKFDGAQE---KFNTYVTLKVQN-VESTT-IAVRGSQPSWEQDFMFEINRLDLG- 71

Query: 328 LIFEVY 333
           L  EV+
Sbjct: 72  LTVEVW 77

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	379
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.76
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.73
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.73
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.71
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.69
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.69
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.68
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.65
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.65
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.65
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.63
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.62
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.62
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.62
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.61
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.61
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.61
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.6
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.6
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.6
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.59
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.58
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.58
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.58
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.57
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.56
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.56
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.55
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.54
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.54
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.54
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.54
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.52
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.51
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.51
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.5
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.47
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.41
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.37
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.37
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.35
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.35
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.26
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.17
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.1
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.06
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	98.85
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	98.83
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	98.79
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	98.24
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	98.08
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	89.69
2k1k_A	38	Ephrin type-A receptor 1; EPHA1, receptor tyrosine	84.6

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.76  E-value=3.6e-18  Score=141.78  Aligned_cols=109  Identities=27%  Similarity=0.337  Sum_probs=94.6

Q ss_pred             ccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEc
Q 016987          256 SELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIF  335 (379)
Q Consensus       256 ~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~  335 (379)
                      +..|..+.|.|+|+|++|++|++++..|.+||||++++++ .+++|+++++++||.|||+|.|.+.+. .+.|.++|||+
T Consensus         5 s~~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~-~~~kT~~~~~t~nP~wne~f~f~~~~~-~~~l~i~V~d~   82 (133)
T 2ep6_A            5 SSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGN-DRLQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDE   82 (133)
T ss_dssp             CCCSCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETT-EEEECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEE
T ss_pred             cccccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECC-EEEEeeeecCCCCCccccEEEEEecCC-CCEEEEEEEEC
Confidence            3345678999999999999999999899999999999998 688999999999999999999999875 57899999999


Q ss_pred             ccCCCC------------------cEEEcccCC-CCceeeEEEEEEEEEE
Q 016987          336 LLFFPA------------------QWVPILNSE-YGAALSNMHLIYIYKY  366 (379)
Q Consensus       336 d~~~~d------------------~w~~L~~~~-~g~~~g~i~l~~~~~~  366 (379)
                      |.+++|                  .|++|.+.+ .+...|+++++++|.|
T Consensus        83 d~~~~~~~lG~~~i~l~~l~~~~~~w~~L~~~~~~~~~~G~i~l~i~~~~  132 (133)
T 2ep6_A           83 DGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYLEMDLIY  132 (133)
T ss_dssp             ETTEEEEECCBCEEEGGGCCSSCCEECCCBCSCTTSCCSSEEEEEEEEEE
T ss_pred             CCCCCCCeeEEEEEEHHHccCCCceEEEeecCCCCCccceEEEEEEEEEe
Confidence            987543                  799997554 3467899999998865

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.73  E-value=2.1e-17  Score=137.51  Aligned_cols=104  Identities=19%  Similarity=0.323  Sum_probs=92.4

Q ss_pred             cCCcEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccC-CCCCCeEeeEEEEEecCCCCceEEEEEEEcccCC
Q 016987          261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVD-NNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFF  339 (379)
Q Consensus       261 ~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~-~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~  339 (379)
                      .+.|.|+|+|++|++|+..+..|.+||||++++++ .+++|++++ +++||.|||+|.|.+.+ ....|.++|||+|.++
T Consensus         7 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~-~~~kT~~~~~~~~nP~Wne~f~f~v~~-~~~~l~~~V~d~~~~~   84 (136)
T 1wfj_A            7 GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRT-QDQKSNVAEGMGTTPEWNETFIFTVSE-GTTELKAKIFDKDVGT   84 (136)
T ss_dssp             CCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSS-CEEECCCCTTCCSSCEEEEEEEEEEES-SCCEEEEEECCSSSCT
T ss_pred             CCcEEEEEEEEeccCCCCcccCCCcCceEEEEECC-ccceeEeccCCCCCCccCcEEEEEECC-CCCEEEEEEEECCCCC
Confidence            57899999999999999999889999999999988 578999998 89999999999999987 4778999999999987


Q ss_pred             CC---------------------cEEEcccCCCCceeeEEEEEEEEEEee
Q 016987          340 PA---------------------QWVPILNSEYGAALSNMHLIYIYKYLR  368 (379)
Q Consensus       340 ~d---------------------~w~~L~~~~~g~~~g~i~l~~~~~~~~  368 (379)
                      +|                     .|++|.  ..++..|+++++++|.-..
T Consensus        85 ~d~~lG~~~i~l~~l~~~~~~~~~w~~L~--~~~~~~G~i~l~l~~~p~~  132 (136)
T 1wfj_A           85 EDDAVGEATIPLEPVFVEGSIPPTAYNVV--KDEEYKGEIWVALSFKPSG  132 (136)
T ss_dssp             TTCCSEEEEEESHHHHHHSEEEEEEEEEE--ETTEEEEEEEEEEEEEECC
T ss_pred             CCceEEEEEEEHHHhccCCCCCcEEEEee--cCCccCEEEEEEEEEEeCC
Confidence            65                     699996  5678899999999887543

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.73  E-value=4.3e-17  Score=136.36  Aligned_cols=104  Identities=30%  Similarity=0.327  Sum_probs=89.3

Q ss_pred             cCCcEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCC---CCceEEEEEEEccc
Q 016987          261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDK---ETQSLIFEVYIFLL  337 (379)
Q Consensus       261 ~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~---~~~~L~i~V~D~d~  337 (379)
                      ...|.|+|+|++|++|+..+. |.+||||++++++ .+++|+++++++||.|||+|.|.+.+.   ....|.++|||+|.
T Consensus         4 ~~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~   81 (140)
T 2dmh_A            4 GSSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKD-EKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFET   81 (140)
T ss_dssp             CBCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSS-CEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTC
T ss_pred             CCCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECC-EeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCC
Confidence            357899999999999999998 9999999999997 679999999999999999999999653   35789999999998


Q ss_pred             CCCC--------------------cEEE---cccCCCCceeeEEEEEEEEEE
Q 016987          338 FFPA--------------------QWVP---ILNSEYGAALSNMHLIYIYKY  366 (379)
Q Consensus       338 ~~~d--------------------~w~~---L~~~~~g~~~g~i~l~~~~~~  366 (379)
                      +++|                    .|++   |.+....+..|+++++++|.-
T Consensus        82 ~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p  133 (140)
T 2dmh_A           82 IGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDP  133 (140)
T ss_dssp             SSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEEEECC
T ss_pred             CCCCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCCCCCEEEEEEEEEC
Confidence            8765                    5877   766555567789888888753

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.71  E-value=1.1e-16  Score=135.14  Aligned_cols=103  Identities=23%  Similarity=0.340  Sum_probs=89.9

Q ss_pred             CCcEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccC---
Q 016987          262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLF---  338 (379)
Q Consensus       262 ~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~---  338 (379)
                      ..|.|+|+|++|++|+.+|..|.+||||++++++ .+++|+++++++||.|||+|.|.+.+. .+.|.++|||+|..   
T Consensus        15 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~d~d~~~~~   92 (148)
T 3kwu_A           15 WSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGK-TKKRTKTIYGNLNPVWEENFHFECHNS-SDRIKVRVLDEDDDIKS   92 (148)
T ss_dssp             CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETT-EEEECCCCCSCSSCEEEEEEEEEECST-TCEEEEEEEECCCSHHH
T ss_pred             cccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECC-EEEECCccCCCCCCCcccEEEEEecCC-CCEEEEEEEECCCCccc
Confidence            4799999999999999999999999999999987 788999999999999999999999775 57899999999985   


Q ss_pred             --------CCC------------------cEEEcccCC-CCceeeEEEEEEEEEE
Q 016987          339 --------FPA------------------QWVPILNSE-YGAALSNMHLIYIYKY  366 (379)
Q Consensus       339 --------~~d------------------~w~~L~~~~-~g~~~g~i~l~~~~~~  366 (379)
                              ++|                  .|++|.... .+...|+++++++|+.
T Consensus        93 ~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~w~~L~~~~~~~~~~G~i~l~l~~e~  147 (148)
T 3kwu_A           93 RVKQRFKRESDDFLGQTIIEVRTLSGEMDVWYNLDKRTDKSAVSGAIRLHISVEI  147 (148)
T ss_dssp             HHHTTTSSCSSEEEEEEEEEGGGCCSEEEEEEECBCSSTTCCCCCEEEEEEEEEC
T ss_pred             cccccccCCCCccEEEEEEEHHHCcCCCCEEEEcccCCCCCCCceEEEEEEEEEe
Confidence                    444                  799997433 3446799999999874

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.69  E-value=1.5e-16  Score=135.80  Aligned_cols=79  Identities=22%  Similarity=0.193  Sum_probs=69.8

Q ss_pred             cCCcEEEEEEeecccccccccC----------CCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEE
Q 016987          261 KPQGKVAVTIVKANNLKNMEMI----------GKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIF  330 (379)
Q Consensus       261 ~~~g~L~V~V~~A~~L~~~d~~----------g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i  330 (379)
                      ...|.|+|+|++|++|+++|..          |.+||||++.+++.+..+|+++++|+||.|||+|.|.+.+  .+.|.+
T Consensus        26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~--~~~L~~  103 (157)
T 2fk9_A           26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTD--GGHLEL  103 (157)
T ss_dssp             CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE--ECEEEE
T ss_pred             cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCC--CCEEEE
Confidence            5689999999999999998843          5689999999988666899999999999999999999975  468999


Q ss_pred             EEEEcccCCCC
Q 016987          331 EVYIFLLFFPA  341 (379)
Q Consensus       331 ~V~D~d~~~~d  341 (379)
                      +|||+|.+++|
T Consensus       104 ~V~D~d~~~~d  114 (157)
T 2fk9_A          104 AVFHETPLGYD  114 (157)
T ss_dssp             EEEECCSSSSC
T ss_pred             EEEECCCCCCC
Confidence            99999988765

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.69  E-value=1.5e-16  Score=132.49  Aligned_cols=96  Identities=16%  Similarity=0.216  Sum_probs=81.6

Q ss_pred             CCcEEEEEEeecccccccccCCC-----------CCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEE
Q 016987          262 PQGKVAVTIVKANNLKNMEMIGK-----------SDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIF  330 (379)
Q Consensus       262 ~~g~L~V~V~~A~~L~~~d~~g~-----------sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i  330 (379)
                      ..|.|+|+|++|++|+++|..++           +||||++++++....+|+++++++||.|||+|.|.+.+.  +.|.+
T Consensus         4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~--~~L~~   81 (136)
T 1gmi_A            4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG--RKIEL   81 (136)
T ss_dssp             EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE--CEEEE
T ss_pred             cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC--CEEEE
Confidence            36899999999999999886655           999999999886668999999999999999999999764  78999


Q ss_pred             EEEEcccCCCC----------------------cEEEcccCCCCceeeEEEEEEEEE
Q 016987          331 EVYIFLLFFPA----------------------QWVPILNSEYGAALSNMHLIYIYK  365 (379)
Q Consensus       331 ~V~D~d~~~~d----------------------~w~~L~~~~~g~~~g~i~l~~~~~  365 (379)
                      +|||+|.+++|                      .|++|.      ..|+++++++|+
T Consensus        82 ~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~------~~G~i~l~l~~~  132 (136)
T 1gmi_A           82 AVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE------PEGKVYVIIDLS  132 (136)
T ss_dssp             EEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECB------SSCEEEEEEEEE
T ss_pred             EEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcC------CCeEEEEEEEEE
Confidence            99999988765                      477763      257788887775

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.68  E-value=2.9e-16  Score=133.34  Aligned_cols=104  Identities=22%  Similarity=0.345  Sum_probs=82.3

Q ss_pred             ccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC-----eeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEE
Q 016987          260 LKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP-----LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYI  334 (379)
Q Consensus       260 ~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~-----~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D  334 (379)
                      ....+.|+|+|++|++|+.+|..|.+||||++++.+     ...++|+++++++||.|||+|.|.+.+. ...|.++|||
T Consensus        16 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~l~~~V~d   94 (153)
T 3b7y_A           16 EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQ-QHRLLFEVFD   94 (153)
T ss_dssp             CTTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTT-TCEEEEEEEE
T ss_pred             CCCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCC-CCEEEEEEEE
Confidence            367899999999999999999889999999999874     2578999999999999999999999764 6789999999


Q ss_pred             cccCCCC--------------------------cEEEcccCC-CCceeeEEEEEEEE
Q 016987          335 FLLFFPA--------------------------QWVPILNSE-YGAALSNMHLIYIY  364 (379)
Q Consensus       335 ~d~~~~d--------------------------~w~~L~~~~-~g~~~g~i~l~~~~  364 (379)
                      +|.+++|                          .|++|.... .++..|+++++++|
T Consensus        95 ~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~  151 (153)
T 3b7y_A           95 ENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTY  151 (153)
T ss_dssp             CCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEE
T ss_pred             CCCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEE
Confidence            9987654                          599986442 34668999998887

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.65  E-value=6.5e-16  Score=126.67  Aligned_cols=78  Identities=26%  Similarity=0.480  Sum_probs=69.5

Q ss_pred             CcEEEEEEeecccccc---cccCCCCCcEEEEEEcC--eeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEccc
Q 016987          263 QGKVAVTIVKANNLKN---MEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLL  337 (379)
Q Consensus       263 ~g~L~V~V~~A~~L~~---~d~~g~sdPyv~v~~~~--~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~  337 (379)
                      .|.|+|+|++|++|+.   .+..|.+||||++++++  ..+++|+++++++||.|||+|.|.+.......|.++|||+|.
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~   81 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence            5889999999999998   46678999999999985  368899999999999999999999976667889999999998


Q ss_pred             CCC
Q 016987          338 FFP  340 (379)
Q Consensus       338 ~~~  340 (379)
                      ++.
T Consensus        82 ~~~   84 (126)
T 1rlw_A           82 VMD   84 (126)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            754

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.65  E-value=1.5e-15  Score=125.63  Aligned_cols=100  Identities=22%  Similarity=0.310  Sum_probs=84.1

Q ss_pred             CcEEEEEEeecccccccccCCCCCcEEEEEEcC-eeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCC-
Q 016987          263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP-LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFP-  340 (379)
Q Consensus       263 ~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~-~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~-  340 (379)
                      ...|+|+|++|++|+++|..|++||||++++.+ ..+++|+++++++||.|||+|.|.+.+.  +.|.++|||+|.+++ 
T Consensus         4 ~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~l~~~v~d~d~~~~~   81 (132)
T 3pyc_A            4 FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKT--DSITISVWNHKKIHKK   81 (132)
T ss_dssp             EEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETT--CCEEEEEEEGGGTTSS
T ss_pred             eEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCC--CEEEEEEEECCCCCCC
Confidence            457899999999999999999999999999975 4689999999999999999999999764  459999999999874 


Q ss_pred             --C---------------------cEEEcccCC---CCceeeEEEEEEEE
Q 016987          341 --A---------------------QWVPILNSE---YGAALSNMHLIYIY  364 (379)
Q Consensus       341 --d---------------------~w~~L~~~~---~g~~~g~i~l~~~~  364 (379)
                        |                     .|++|....   ..+..|++.++++.
T Consensus        82 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~  131 (132)
T 3pyc_A           82 QGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQT  131 (132)
T ss_dssp             TTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred             CCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence              3                     688887542   22358888888765

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.65  E-value=1.2e-15  Score=132.82  Aligned_cols=104  Identities=21%  Similarity=0.333  Sum_probs=83.2

Q ss_pred             cCCcEEEEEEeecccccccccCCCCCcEEEEEEcC-----eeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEc
Q 016987          261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP-----LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIF  335 (379)
Q Consensus       261 ~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~-----~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~  335 (379)
                      ...|.|+|+|++|++|+.++..|++||||++++.+     ..+++|+++++++||.|||+|.|.+... ...|.++|||+
T Consensus         5 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~L~~~V~d~   83 (176)
T 3m7f_B            5 DDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQ-RHRILFEVFDE   83 (176)
T ss_dssp             TTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTT-TCEEEEEEEEC
T ss_pred             CCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCC-CCEEEEEEEEC
Confidence            56899999999999999999999999999999874     1578999999999999999999999754 57899999999


Q ss_pred             ccCCCC--------------------------cEEEcccC-CCCceeeEEEEEEEEE
Q 016987          336 LLFFPA--------------------------QWVPILNS-EYGAALSNMHLIYIYK  365 (379)
Q Consensus       336 d~~~~d--------------------------~w~~L~~~-~~g~~~g~i~l~~~~~  365 (379)
                      |.+++|                          .||+|... ..++..|+++++++|.
T Consensus        84 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~  140 (176)
T 3m7f_B           84 NRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYL  140 (176)
T ss_dssp             C----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEEC
T ss_pred             CCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEE
Confidence            988664                          39999753 3456689999988875

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.63  E-value=2.9e-16  Score=134.02  Aligned_cols=87  Identities=15%  Similarity=0.083  Sum_probs=75.8

Q ss_pred             cccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC---e--eeEeeeccCCCCCCeEeeEEEEEecCC--CCce
Q 016987          255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP---L--FKVKTNVVDNNLNPVWNQTFELIAEDK--ETQS  327 (379)
Q Consensus       255 ~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~---~--~~~~T~v~~~tlnP~Wne~f~f~v~~~--~~~~  327 (379)
                      ++..|....+.|+|+|++|+||+++|..|.+||||++++.+   .  .+++|+++++|+||+|||+|.|.+...  ....
T Consensus        34 ~sl~y~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~  113 (155)
T 2z0u_A           34 IALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKT  113 (155)
T ss_dssp             EEEEEETTTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCE
T ss_pred             EEEEEcCCCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCE
Confidence            44456788999999999999999999999999999999975   2  379999999999999999999998542  2468


Q ss_pred             EEEEEEEcccCCCC
Q 016987          328 LIFEVYIFLLFFPA  341 (379)
Q Consensus       328 L~i~V~D~d~~~~d  341 (379)
                      |.++|||+|.+++|
T Consensus       114 L~~~V~d~d~~~~~  127 (155)
T 2z0u_A          114 LRVDVCTTDRSHLE  127 (155)
T ss_dssp             EEEEEEEECTTSCE
T ss_pred             EEEEEEECCCCCCC
Confidence            99999999998876

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.62  E-value=1e-15  Score=129.43  Aligned_cols=93  Identities=30%  Similarity=0.497  Sum_probs=79.3

Q ss_pred             CCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecCCC-CceEEEEEEEcc
Q 016987          262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDKE-TQSLIFEVYIFL  336 (379)
Q Consensus       262 ~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~~~-~~~L~i~V~D~d  336 (379)
                      ..+.|+|+|++|++|+.++..+.+||||++++.+    ..+++|+++++++||.|||+|.|.+.... ...|.++|||+|
T Consensus        29 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d  108 (149)
T 1a25_A           29 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWD  108 (149)
T ss_dssp             SSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECC
T ss_pred             cCCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECC
Confidence            4789999999999999999889999999999974    36789999999999999999999986532 468999999999


Q ss_pred             cCCCC-------------------cEEEcccCCCCce
Q 016987          337 LFFPA-------------------QWVPILNSEYGAA  354 (379)
Q Consensus       337 ~~~~d-------------------~w~~L~~~~~g~~  354 (379)
                      .+++|                   .||+|.+.+.|+.
T Consensus       109 ~~~~~~~iG~~~i~l~~l~~~~~~~W~~L~~~~~g~~  145 (149)
T 1a25_A          109 LTSRNDFMGSLSFGISELQKAGVDGWFKLLSQEEGEY  145 (149)
T ss_dssp             SSSCCEEEEEEEEEHHHHTTCCEEEEEECBCHHHHTT
T ss_pred             CCCCCCEEEEEEEEHHHhCcCccCCeEEccCCCCCcc
Confidence            98765                   6888876555544

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.62  E-value=3.2e-16  Score=131.01  Aligned_cols=101  Identities=23%  Similarity=0.291  Sum_probs=83.5

Q ss_pred             cccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEe-c--CCCCce
Q 016987          255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIA-E--DKETQS  327 (379)
Q Consensus       255 ~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v-~--~~~~~~  327 (379)
                      ++..|.+..+.|+|+|++|++|+.++..|.+||||++++.+    ..+++|+++++++||.|||+|.|.+ .  +.....
T Consensus        12 ~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~   91 (141)
T 1v27_A           12 IKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERM   91 (141)
T ss_dssp             EEEEEETTTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCE
T ss_pred             EEEEEeCCCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCE
Confidence            34446678899999999999999999999999999999832    3678999999999999999999984 3  223578


Q ss_pred             EEEEEEEcccCCC--C-------------------cEEEcccCCCCcee
Q 016987          328 LIFEVYIFLLFFP--A-------------------QWVPILNSEYGAAL  355 (379)
Q Consensus       328 L~i~V~D~d~~~~--d-------------------~w~~L~~~~~g~~~  355 (379)
                      |.++|||+|.+++  |                   .||+|.+.+.|...
T Consensus        92 l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~~~~W~~L~~~~~g~~s  140 (141)
T 1v27_A           92 LEITLWDQARVREEESEFLGEILIELETALLDDEPHWYKLQTHDSGPSS  140 (141)
T ss_dssp             EEEEEEEBCSSSSCCBCCCEEEEEEGGGCCCSSEEEEEECBCCSSCCCC
T ss_pred             EEEEEEECCCCcCCCCceEEEEEEEccccCCCCCCceEECcccccCCCC
Confidence            9999999999875  3                   58888877666554

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.62  E-value=5.1e-15  Score=128.54  Aligned_cols=104  Identities=16%  Similarity=0.224  Sum_probs=84.7

Q ss_pred             cCCcEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCC
Q 016987          261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFP  340 (379)
Q Consensus       261 ~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~  340 (379)
                      ...+.|+|+|++|++|+..+..+++||||++++++ .+++|+++++++||.|||+|.|.+..  .+.|.++|||+|.+++
T Consensus        33 ~~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~-~~~kT~v~~~tlnP~Wne~f~f~v~~--~~~L~~~V~D~d~~~~  109 (173)
T 2nq3_A           33 TMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDG-QSKKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKS  109 (173)
T ss_dssp             SCCEEEEEEEEEEEECCCC--CCCCCEEEEEEETT-EEEECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSSSC
T ss_pred             CCceEEEEEEEEeECCCCcccCCCCCeEEEEEECC-EEeEccccCCCCCCeECCEEEEEeCC--CCEEEEEEEECCCCCC
Confidence            46789999999999999444455699999999998 78999999999999999999999853  7889999999999876


Q ss_pred             C-------------------------cEEEcccCC-CCceeeEEEEEEEEEEe
Q 016987          341 A-------------------------QWVPILNSE-YGAALSNMHLIYIYKYL  367 (379)
Q Consensus       341 d-------------------------~w~~L~~~~-~g~~~g~i~l~~~~~~~  367 (379)
                      |                         .|++|...+ ..+..|++.++++|--.
T Consensus       110 dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l~~  162 (173)
T 2nq3_A          110 DVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQL  162 (173)
T ss_dssp             CEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEEC
T ss_pred             CceEEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEeeeec
Confidence            5                         289887542 33567888777776543

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.61  E-value=1.9e-15  Score=125.68  Aligned_cols=82  Identities=17%  Similarity=0.206  Sum_probs=70.5

Q ss_pred             cccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEE-ecC--CCCceEEEE
Q 016987          259 ELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELI-AED--KETQSLIFE  331 (379)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~-v~~--~~~~~L~i~  331 (379)
                      +....|.|+|+|++|++|+. +..|.+||||++++.+    ..+++|+++++++||.|||+|.|. +..  .....|.++
T Consensus        15 ~~~~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~   93 (134)
T 2b3r_A           15 VSYRNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLS   93 (134)
T ss_dssp             EEEETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEE
T ss_pred             EeecCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEE
Confidence            45678999999999999997 7788999999999832    357899999999999999999999 653  245789999


Q ss_pred             EEEcccCCCC
Q 016987          332 VYIFLLFFPA  341 (379)
Q Consensus       332 V~D~d~~~~d  341 (379)
                      |||+|.+++|
T Consensus        94 V~d~d~~~~~  103 (134)
T 2b3r_A           94 VLSAESLREN  103 (134)
T ss_dssp             EEECCSSSCC
T ss_pred             EEECCCCCCC
Confidence            9999998876

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.61  E-value=2.4e-15  Score=127.80  Aligned_cols=100  Identities=20%  Similarity=0.303  Sum_probs=84.1

Q ss_pred             cccccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEe--cCCCCc
Q 016987          253 VDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIA--EDKETQ  326 (379)
Q Consensus       253 ~d~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v--~~~~~~  326 (379)
                      +.++..|....|.|+|+|++|++|+..+ .|.+||||++++.+    ..+++|+++++++||.|||+|.|.+  .+. ..
T Consensus        16 ~~lsL~y~~~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~   93 (153)
T 3fbk_A           16 GQLRLSIDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDD-QK   93 (153)
T ss_dssp             CEEEEEEEESSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGT-TS
T ss_pred             EEEEEEEECCCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHh-CC
Confidence            3455667889999999999999999999 68999999999843    2578999999999999999999998  443 35


Q ss_pred             eEEEEEEEcccCCC-C---------------------cEEEcccCCCCce
Q 016987          327 SLIFEVYIFLLFFP-A---------------------QWVPILNSEYGAA  354 (379)
Q Consensus       327 ~L~i~V~D~d~~~~-d---------------------~w~~L~~~~~g~~  354 (379)
                      .|.++|||+|.+++ |                     .||+|.+.++|+.
T Consensus        94 ~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~~~g~~  143 (153)
T 3fbk_A           94 RLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEHLGRT  143 (153)
T ss_dssp             EEEEEEEECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCTTGGGT
T ss_pred             EEEEEEEeCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCChhhccc
Confidence            69999999998765 4                     6999987777754

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.61  E-value=1.8e-15  Score=128.39  Aligned_cols=88  Identities=31%  Similarity=0.402  Sum_probs=75.9

Q ss_pred             ccccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC--eeeEeeeccCCCCCCeEeeEEEEEecCC--CCceEE
Q 016987          254 DTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLI  329 (379)
Q Consensus       254 d~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~--~~~~~T~v~~~tlnP~Wne~f~f~v~~~--~~~~L~  329 (379)
                      .++..|.+..+.|+|+|++|++|+..+..+.+||||++++.+  ..+++|+++++++||.|||+|.|.+...  ....|.
T Consensus        32 ~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~  111 (152)
T 1rsy_A           32 QYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLV  111 (152)
T ss_dssp             EEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEE
T ss_pred             EEEEEEeCCCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEE
Confidence            344557788999999999999999999889999999999953  3578999999999999999999988532  357899


Q ss_pred             EEEEEcccCCCC
Q 016987          330 FEVYIFLLFFPA  341 (379)
Q Consensus       330 i~V~D~d~~~~d  341 (379)
                      ++|||+|.+++|
T Consensus       112 i~V~d~d~~~~~  123 (152)
T 1rsy_A          112 MAVYDFDRFSKH  123 (152)
T ss_dssp             EEEEECCSSSCC
T ss_pred             EEEEECCCCCCC
Confidence            999999998776

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.60  E-value=1.8e-15  Score=124.54  Aligned_cols=86  Identities=24%  Similarity=0.244  Sum_probs=69.7

Q ss_pred             cccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEec---CCCCce
Q 016987          255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAE---DKETQS  327 (379)
Q Consensus       255 ~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~---~~~~~~  327 (379)
                      ++..|.+..+.|+|+|++|++|+.++..|.+||||++++.+    ..+++|+++++++||.|||+|.|.+.   +.....
T Consensus         9 ~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~   88 (129)
T 2bwq_A            9 IKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERM   88 (129)
T ss_dssp             EEEEEETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCE
T ss_pred             EEEEEccCCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCe
Confidence            44456778999999999999999999889999999999832    36899999999999999999999852   223578


Q ss_pred             EEEEEEEcccCCC
Q 016987          328 LIFEVYIFLLFFP  340 (379)
Q Consensus       328 L~i~V~D~d~~~~  340 (379)
                      |.++|||+|.+++
T Consensus        89 l~~~V~d~d~~~~  101 (129)
T 2bwq_A           89 LEITLWDQARVRE  101 (129)
T ss_dssp             EEEEEEEC-----
T ss_pred             EEEEEEECCcCcC
Confidence            9999999999875

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.60  E-value=2.7e-15  Score=126.67  Aligned_cols=87  Identities=20%  Similarity=0.271  Sum_probs=74.5

Q ss_pred             cccccccCCcEEEEEEeecccccccc-cCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecCC--CCce
Q 016987          255 TSELELKPQGKVAVTIVKANNLKNME-MIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQS  327 (379)
Q Consensus       255 ~~~l~~~~~g~L~V~V~~A~~L~~~d-~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~~--~~~~  327 (379)
                      ++..|.+..+.|+|+|++|++|+.++ ..|.+||||++++.+    ..+++|+++++++||.|||+|.|.+...  ....
T Consensus        14 ~sl~y~~~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~   93 (148)
T 3fdw_A           14 FSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRT   93 (148)
T ss_dssp             EEEEEETTTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCE
T ss_pred             EEEEEeCCCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceE
Confidence            44557788999999999999999988 578999999999974    2478999999999999999999998653  2457


Q ss_pred             EEEEEEEcccCCCC
Q 016987          328 LIFEVYIFLLFFPA  341 (379)
Q Consensus       328 L~i~V~D~d~~~~d  341 (379)
                      |.++|||+|.+++|
T Consensus        94 L~~~V~d~d~~~~~  107 (148)
T 3fdw_A           94 LQFSVWHHGRFGRN  107 (148)
T ss_dssp             EEEEEEEECGGGCE
T ss_pred             EEEEEEECCCCcCC
Confidence            99999999998765

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.59  E-value=3.1e-15  Score=125.49  Aligned_cols=87  Identities=31%  Similarity=0.403  Sum_probs=75.5

Q ss_pred             cccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC--eeeEeeeccCCCCCCeEeeEEEEEecCC--CCceEEE
Q 016987          255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLIF  330 (379)
Q Consensus       255 ~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~--~~~~~T~v~~~tlnP~Wne~f~f~v~~~--~~~~L~i  330 (379)
                      ++..|....+.|+|+|++|++|+.++..+.+||||++++.+  ..+++|+++++++||.|||+|.|.+...  ....|.+
T Consensus        25 ~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i  104 (143)
T 3f04_A           25 YSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVM  104 (143)
T ss_dssp             EEEEEETTTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEE
T ss_pred             EEEEEeCCCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEE
Confidence            34456688999999999999999999889999999999943  3579999999999999999999988532  3578999


Q ss_pred             EEEEcccCCCC
Q 016987          331 EVYIFLLFFPA  341 (379)
Q Consensus       331 ~V~D~d~~~~d  341 (379)
                      +|||+|.+++|
T Consensus       105 ~V~d~d~~~~~  115 (143)
T 3f04_A          105 AVYDFDRFSKH  115 (143)
T ss_dssp             EEEECCSSSCC
T ss_pred             EEEeCCCCCCC
Confidence            99999998876

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=2.3e-15  Score=126.06  Aligned_cols=87  Identities=29%  Similarity=0.371  Sum_probs=74.2

Q ss_pred             cccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC--eeeEeeeccCCCCCCeEeeEEEEEecC---CCCceEE
Q 016987          255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIAED---KETQSLI  329 (379)
Q Consensus       255 ~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~--~~~~~T~v~~~tlnP~Wne~f~f~v~~---~~~~~L~  329 (379)
                      ++..|.+..+.|+|+|++|++|+.++..|.+||||++++.+  ..+++|+++++++||.|||+|.|.+..   .....|.
T Consensus        17 ~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~   96 (141)
T 2d8k_A           17 FSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILY   96 (141)
T ss_dssp             EEEEECSSSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEE
T ss_pred             EEEEEeCCCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEE
Confidence            34446678999999999999999999889999999999953  357899999999999999999998522   2357899


Q ss_pred             EEEEEcccCCCC
Q 016987          330 FEVYIFLLFFPA  341 (379)
Q Consensus       330 i~V~D~d~~~~d  341 (379)
                      ++|||+|.+++|
T Consensus        97 i~V~d~d~~~~~  108 (141)
T 2d8k_A           97 LQVLDYDRFSRN  108 (141)
T ss_dssp             EEEEECCSSSSC
T ss_pred             EEEEECCCCCCC
Confidence            999999998776

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.58  E-value=1.9e-15  Score=129.17  Aligned_cols=87  Identities=31%  Similarity=0.431  Sum_probs=74.7

Q ss_pred             cccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecCC--CCceE
Q 016987          255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSL  328 (379)
Q Consensus       255 ~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~~--~~~~L  328 (379)
                      ++..|.+..|.|+|+|++|++|+.+|..|.+||||++++.+    ..+++|+++++++||.|||+|.|.+...  ....|
T Consensus        16 ~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l   95 (159)
T 1tjx_A           16 FSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQV   95 (159)
T ss_dssp             EEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEE
T ss_pred             EEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEE
Confidence            34456788999999999999999999889999999999863    2478999999999999999999998543  24579


Q ss_pred             EEEEEEcccCCCC
Q 016987          329 IFEVYIFLLFFPA  341 (379)
Q Consensus       329 ~i~V~D~d~~~~d  341 (379)
                      .++|||+|.+++|
T Consensus        96 ~i~V~d~d~~~~~  108 (159)
T 1tjx_A           96 VVTVLDYDKIGKN  108 (159)
T ss_dssp             EEEEEECCSSSCC
T ss_pred             EEEEEECCCCCCC
Confidence            9999999998765

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.58  E-value=7.4e-15  Score=122.64  Aligned_cols=84  Identities=15%  Similarity=0.126  Sum_probs=70.7

Q ss_pred             cccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC---eeeEeeeccCCCCCCeEeeEEEEEecCC--CCceEE
Q 016987          255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP---LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLI  329 (379)
Q Consensus       255 ~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~---~~~~~T~v~~~tlnP~Wne~f~f~v~~~--~~~~L~  329 (379)
                      ++..|....+.|+|+|++|+   ++|..|.+||||++++.+   ..+++|+++++++||.|||+|.|.+...  ....|.
T Consensus        17 ~sl~y~~~~~~L~V~v~~a~---~~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~   93 (138)
T 1wfm_A           17 YCLDYDCQKAELFVTRLEAV---TSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLT   93 (138)
T ss_dssp             EEEEEETTTTEEEEEEEEEE---CCCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEE
T ss_pred             EEEEEeCCCCEEEEEEEEEE---cCCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEE
Confidence            44456778999999999999   367789999999999853   3468999999999999999999998643  356899


Q ss_pred             EEEEEcccCCCC
Q 016987          330 FEVYIFLLFFPA  341 (379)
Q Consensus       330 i~V~D~d~~~~d  341 (379)
                      ++|||+|.+++|
T Consensus        94 ~~V~d~d~~~~d  105 (138)
T 1wfm_A           94 LTLRTCDRFSRH  105 (138)
T ss_dssp             EEEEECCSSCTT
T ss_pred             EEEEECCCCCCC
Confidence            999999998775

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.57  E-value=8.9e-15  Score=121.63  Aligned_cols=87  Identities=30%  Similarity=0.356  Sum_probs=75.3

Q ss_pred             cccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecCCC--CceE
Q 016987          255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDKE--TQSL  328 (379)
Q Consensus       255 ~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~~~--~~~L  328 (379)
                      ++..|.+..|.|+|+|++|++|+..+..|.+||||++++.+    ..+++|+++++++||.|||+|.|.+....  ...|
T Consensus         7 ~sl~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l   86 (138)
T 3n5a_A            7 LSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTI   86 (138)
T ss_dssp             EEEEEETTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEE
T ss_pred             EEEEEcCCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEE
Confidence            34456788999999999999999999989999999999864    25789999999999999999999986532  3679


Q ss_pred             EEEEEEcccCCCC
Q 016987          329 IFEVYIFLLFFPA  341 (379)
Q Consensus       329 ~i~V~D~d~~~~d  341 (379)
                      .++|||+|.+++|
T Consensus        87 ~~~V~d~~~~~~~   99 (138)
T 3n5a_A           87 IITVMDKDKLSRN   99 (138)
T ss_dssp             EEEEEECCSSSCC
T ss_pred             EEEEEECCCCCCC
Confidence            9999999998776

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.56  E-value=1.3e-14  Score=125.00  Aligned_cols=87  Identities=28%  Similarity=0.367  Sum_probs=75.7

Q ss_pred             cccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecCC--CCceE
Q 016987          255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSL  328 (379)
Q Consensus       255 ~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~~--~~~~L  328 (379)
                      ++..|.+..+.|+|+|++|++|+.++..|.+||||++++.+    ..+++|+++++++||.|||+|.|.+...  ....|
T Consensus        28 ~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L  107 (166)
T 2cm5_A           28 VSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSL  107 (166)
T ss_dssp             EEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEE
T ss_pred             EEEEEECCCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEE
Confidence            34446678999999999999999999889999999999975    3589999999999999999999998542  25689


Q ss_pred             EEEEEEcccCCCC
Q 016987          329 IFEVYIFLLFFPA  341 (379)
Q Consensus       329 ~i~V~D~d~~~~d  341 (379)
                      .++|||+|.+++|
T Consensus       108 ~i~V~d~d~~~~~  120 (166)
T 2cm5_A          108 DISVWDYDIGKSN  120 (166)
T ss_dssp             EEEEEECCSSSCC
T ss_pred             EEEEEECCCCCCC
Confidence            9999999998776

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.56  E-value=2.1e-14  Score=134.19  Aligned_cols=111  Identities=28%  Similarity=0.404  Sum_probs=93.0

Q ss_pred             cccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC--eeeEeeeccCCCCCCeEeeEEEEEecCC--CCceEEE
Q 016987          255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLIF  330 (379)
Q Consensus       255 ~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~--~~~~~T~v~~~tlnP~Wne~f~f~v~~~--~~~~L~i  330 (379)
                      ++..|....|.|+|+|++|++|+.+|..|.+||||++++++  ..+++|+++++++||.|||+|.|.+...  ....|.+
T Consensus        10 ~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~   89 (284)
T 2r83_A           10 YSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVM   89 (284)
T ss_dssp             EEEEEETTTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEE
T ss_pred             EEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEE
Confidence            44557788999999999999999999899999999999964  3578999999999999999999998642  3578999


Q ss_pred             EEEEcccCCCC--------------------cEEEcccCCC--CceeeEEEEEEEEE
Q 016987          331 EVYIFLLFFPA--------------------QWVPILNSEY--GAALSNMHLIYIYK  365 (379)
Q Consensus       331 ~V~D~d~~~~d--------------------~w~~L~~~~~--g~~~g~i~l~~~~~  365 (379)
                      +|||+|.+++|                    .|++|.....  .+..|++.+++.|.
T Consensus        90 ~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~G~i~l~l~~~  146 (284)
T 2r83_A           90 AVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYV  146 (284)
T ss_dssp             EEEECCSSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSSCCCCCCCEEEEEEEEE
T ss_pred             EEEECCCCCCCceeEEEEEcchhcccCCcceeEEEeeccccccccccccEEEEEEec
Confidence            99999988765                    6999975432  34678988888875

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.55  E-value=2.3e-14  Score=121.65  Aligned_cols=87  Identities=26%  Similarity=0.208  Sum_probs=69.1

Q ss_pred             cccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC--e--eeEeeeccCCCCCCeEeeEEEEEecCC--CCceE
Q 016987          255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--L--FKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSL  328 (379)
Q Consensus       255 ~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~--~--~~~~T~v~~~tlnP~Wne~f~f~v~~~--~~~~L  328 (379)
                      ++..|.+..+.|.|+|++|++|+.++..|.+||||++++.+  .  .+++|+++++++||.|||+|.|.+...  ....|
T Consensus        21 ~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l  100 (153)
T 1w15_A           21 VSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISV  100 (153)
T ss_dssp             EEEEEETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEE
T ss_pred             EEEEEcCCCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEE
Confidence            34456778999999999999999999889999999999843  2  367999999999999999999998654  24679


Q ss_pred             EEEEEEcccCCCC
Q 016987          329 IFEVYIFLLFFPA  341 (379)
Q Consensus       329 ~i~V~D~d~~~~d  341 (379)
                      .++|||+|.+++|
T Consensus       101 ~v~V~d~d~~~~~  113 (153)
T 1w15_A          101 EFLVLDSERGSRN  113 (153)
T ss_dssp             EEEEEECCTTSCC
T ss_pred             EEEEEeCCCCCCC
Confidence            9999999998776

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.54  E-value=3.1e-15  Score=125.29  Aligned_cols=79  Identities=30%  Similarity=0.444  Sum_probs=68.8

Q ss_pred             CcEEEEEEeecccccccccCCCCCcEEEEEEcCe-------------eeEeeeccCCCCCCeEeeEEEEE-ec--CCCCc
Q 016987          263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL-------------FKVKTNVVDNNLNPVWNQTFELI-AE--DKETQ  326 (379)
Q Consensus       263 ~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~-------------~~~~T~v~~~tlnP~Wne~f~f~-v~--~~~~~  326 (379)
                      .|.|+|+|++|++|+.+|..|.+||||++++.+.             .+++|+++++++||.|||+|.|. +.  +....
T Consensus        17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~   96 (142)
T 1rh8_A           17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK   96 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred             CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCC
Confidence            7899999999999999999999999999999762             25789999999999999999997 53  22467


Q ss_pred             eEEEEEEEcccCCCC
Q 016987          327 SLIFEVYIFLLFFPA  341 (379)
Q Consensus       327 ~L~i~V~D~d~~~~d  341 (379)
                      .|.++|||+|.+++|
T Consensus        97 ~l~i~V~d~d~~~~~  111 (142)
T 1rh8_A           97 TLEVTVWDYDRFSSN  111 (142)
T ss_dssp             EEEEEEEEECSSSCE
T ss_pred             EEEEEEEECCCCCCC
Confidence            899999999998765

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.54  E-value=3e-14  Score=118.70  Aligned_cols=94  Identities=28%  Similarity=0.350  Sum_probs=77.5

Q ss_pred             cccccccCCcEEEEEEeecccccccccC-CCCCcEEEEEEcC--eeeEeeeccCCCCCCeEeeEEEEE-ecCC--CCceE
Q 016987          255 TSELELKPQGKVAVTIVKANNLKNMEMI-GKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELI-AEDK--ETQSL  328 (379)
Q Consensus       255 ~~~l~~~~~g~L~V~V~~A~~L~~~d~~-g~sdPyv~v~~~~--~~~~~T~v~~~tlnP~Wne~f~f~-v~~~--~~~~L  328 (379)
                      ++..|.+..+.|+|+|++|++|+.+|.. +.+||||++++.+  ..+++|+++++++||.|||+|.|. +...  ....|
T Consensus        13 ~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l   92 (138)
T 1ugk_A           13 FSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELAL   92 (138)
T ss_dssp             EEEEEEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEE
T ss_pred             EEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEE
Confidence            3444667899999999999999999985 8999999999964  368999999999999999999996 5432  34689


Q ss_pred             EEEEEEcccCCCC-----cEEEccc
Q 016987          329 IFEVYIFLLFFPA-----QWVPILN  348 (379)
Q Consensus       329 ~i~V~D~d~~~~d-----~w~~L~~  348 (379)
                      .++|||+|.+++|     ..++|.+
T Consensus        93 ~i~V~d~d~~~~~~~lG~~~i~l~~  117 (138)
T 1ugk_A           93 HFTILSFDRFSRDDIIGEVLIPLSG  117 (138)
T ss_dssp             EEEEEEECSSCCCCCCEEEEEECTT
T ss_pred             EEEEEECCCCCCCcEEEEEEEehhH
Confidence            9999999998776     3555543

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=8.2e-15  Score=122.75  Aligned_cols=83  Identities=27%  Similarity=0.329  Sum_probs=71.0

Q ss_pred             ccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecCC--CCceEE
Q 016987          256 SELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLI  329 (379)
Q Consensus       256 ~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~~--~~~~L~  329 (379)
                      +..|.+..+.|+|+|++|++|+.++..| +||||++++.+    ..+++|+++++++||.|||+|.|.+...  ....|.
T Consensus        16 ~l~y~~~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~   94 (142)
T 2dmg_A           16 TIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLD   94 (142)
T ss_dssp             EEEEETTTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEE
T ss_pred             EEEEeCCCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEE
Confidence            4446678999999999999999999888 99999999853    2578999999999999999999988432  245899


Q ss_pred             EEEEEcccCC
Q 016987          330 FEVYIFLLFF  339 (379)
Q Consensus       330 i~V~D~d~~~  339 (379)
                      |+|||+|.++
T Consensus        95 i~V~d~d~~~  104 (142)
T 2dmg_A           95 VAVKNSGGFL  104 (142)
T ss_dssp             EEEEECCCSS
T ss_pred             EEEEECCCcc
Confidence            9999999875

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.54  E-value=1.2e-14  Score=121.66  Aligned_cols=96  Identities=27%  Similarity=0.378  Sum_probs=79.1

Q ss_pred             cccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEE-ecC--CCCce
Q 016987          255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELI-AED--KETQS  327 (379)
Q Consensus       255 ~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~-v~~--~~~~~  327 (379)
                      ++..|.+..+.|+|+|++|++|+.++..|.+||||++++.+    ..+++|+++++++||.|||+|.|. +..  .....
T Consensus        20 ~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~   99 (142)
T 2chd_A           20 FSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKT   99 (142)
T ss_dssp             EEEEEEGGGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCE
T ss_pred             EEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCE
Confidence            44556678999999999999999999889999999999975    368999999999999999999998 532  12368


Q ss_pred             EEEEEEEcccCCCC-----cEEEcccCC
Q 016987          328 LIFEVYIFLLFFPA-----QWVPILNSE  350 (379)
Q Consensus       328 L~i~V~D~d~~~~d-----~w~~L~~~~  350 (379)
                      |.++|||+|.+++|     ..++|.+-.
T Consensus       100 l~i~V~d~d~~~~d~~iG~~~i~l~~l~  127 (142)
T 2chd_A          100 LRISVCDEDKFGHNEFIGETRFSLKKLK  127 (142)
T ss_dssp             EEEEEEEECTTSCEEEEEEEEEEGGGCC
T ss_pred             EEEEEEECCCCCCCcEEEEEEEEHHHcC
Confidence            99999999998876     355664433

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.52  E-value=2.5e-14  Score=123.91  Aligned_cols=88  Identities=18%  Similarity=0.315  Sum_probs=75.5

Q ss_pred             CCcEEEEEEeeccccccccc-CCCCCcEEEEEEcCe----eeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEE-Ec
Q 016987          262 PQGKVAVTIVKANNLKNMEM-IGKSDPYAVVHIKPL----FKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVY-IF  335 (379)
Q Consensus       262 ~~g~L~V~V~~A~~L~~~d~-~g~sdPyv~v~~~~~----~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~-D~  335 (379)
                      ..|.|.|+|++|++|+.+|. .|.+||||++++.+.    .+++|+++++++||.|||+|.|.+.. ....|.++|| |+
T Consensus        28 ~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~-~~~~L~~~V~~d~  106 (171)
T 2q3x_A           28 KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESP-QGKVLQVIVWGDY  106 (171)
T ss_dssp             ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCC-TTEEEEEEEEEEC
T ss_pred             CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecC-CCCEEEEEEEEcC
Confidence            58999999999999999985 689999999998642    37899999999999999999999864 4678999999 99


Q ss_pred             ccCCCC--------------------cEEEcccCC
Q 016987          336 LLFFPA--------------------QWVPILNSE  350 (379)
Q Consensus       336 d~~~~d--------------------~w~~L~~~~  350 (379)
                      |.+++|                    .||+|.+..
T Consensus       107 d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~~  141 (171)
T 2q3x_A          107 GRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPPS  141 (171)
T ss_dssp             STTCSSEEEEEEEECGGGSCTTSCEEEEEECBCGG
T ss_pred             CCCCCCCEEEEEEEEHHHcccCCCcceeEECCCcc
Confidence            998775                    799997543

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.51  E-value=3.3e-13  Score=136.38  Aligned_cols=142  Identities=19%  Similarity=0.251  Sum_probs=105.0

Q ss_pred             EecCCCcceEEEEeeecCcCcccccchHHHHHHHHHHHHhhhccc-----C--ceEEeeeCCCC---------ccccc-c
Q 016987          196 ALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQW-----P--HRIVVPIGGIP---------VDTSE-L  258 (379)
Q Consensus       196 sf~~~P~p~idf~l~~~g~~i~~iP~l~~~i~~~i~~~i~~~~v~-----P--~~~~vpl~~~~---------~d~~~-l  258 (379)
                      |+..-|. -|+|++.|+..-+..-+--.+-++.++.+.+.+.-.+     |  |-. .++.+.+         .-.+. .
T Consensus       310 Sv~~~P~-~I~~~l~PI~~Lv~~~~~kr~nLk~Ai~~Yl~e~~~c~~C~~PC~nn~-~~l~g~~C~C~C~~~~~t~~~~C  387 (540)
T 3nsj_A          310 SLPSNPG-LVDYSLEPLHTLLEEQNPKREALRQAISHYIMSRARWQNCSRPCRSGQ-HKSSHDSCQCECQDSKVTNQDCC  387 (540)
T ss_dssp             HTTTSCE-EEEEEEEEGGGGSCTTCTHHHHHHHHHHHHHHHTCBCCCTTSCCBTTE-EECSSCTTCEEESCTTTBCGGGC
T ss_pred             HHhhCCc-eEEEEEEEHHHhcCCcHHHHHHHHHHHHHHHHhcCchhhhcccccCCC-ccCCCCceEeeCCCCCCcccccc
Confidence            3444453 5999999986322223456778888888888887666     4  222 2343311         01111 1


Q ss_pred             cc-cCCcEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecC-CCCceEEEEEEEcc
Q 016987          259 EL-KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAED-KETQSLIFEVYIFL  336 (379)
Q Consensus       259 ~~-~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~-~~~~~L~i~V~D~d  336 (379)
                      .. ...|.|+|+|++|++|+. |..|++||||++++++ .+++|+++++++||+|||+|.|.+.+ ...+.|.|+|||+|
T Consensus       388 ~~~~~~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~-~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D  465 (540)
T 3nsj_A          388 PRQRGLAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGG-QEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDAD  465 (540)
T ss_dssp             BSSTTEEEEEEEEEEEESCCC-SSCSCCCEEEEEEETT-EEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECC
T ss_pred             cccCcccEEEEEEEEccCCCc-ccCCCcCeEEEEEECC-EeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECC
Confidence            11 346899999999999998 9899999999999997 57999999999999999999998643 35788999999999


Q ss_pred             cCCCC
Q 016987          337 LFFPA  341 (379)
Q Consensus       337 ~~~~d  341 (379)
                      .+++|
T Consensus       466 ~~~~d  470 (540)
T 3nsj_A          466 YGWDD  470 (540)
T ss_dssp             SSSCC
T ss_pred             CCCCC
Confidence            99886

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.51  E-value=5.9e-14  Score=132.15  Aligned_cols=112  Identities=28%  Similarity=0.371  Sum_probs=91.5

Q ss_pred             ccccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEc--CeeeEeeeccCCCCCCeEeeEEEEEecCC--CCceEE
Q 016987          254 DTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIK--PLFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLI  329 (379)
Q Consensus       254 d~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~--~~~~~~T~v~~~tlnP~Wne~f~f~v~~~--~~~~L~  329 (379)
                      .++..|....+.|+|+|++|++|+.+|..|.+||||++++.  +..+++|+++++++||.|||+|.|.+...  ....|.
T Consensus        10 ~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~   89 (296)
T 1dqv_A           10 SFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLH   89 (296)
T ss_dssp             EEEEECCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCE
T ss_pred             EEEEEEeCCCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEE
Confidence            34555778899999999999999999999999999999994  23678999999999999999999998532  245899


Q ss_pred             EEEEEcccCCCC----------------------cEEEcccCC-CCceeeEEEEEEEEE
Q 016987          330 FEVYIFLLFFPA----------------------QWVPILNSE-YGAALSNMHLIYIYK  365 (379)
Q Consensus       330 i~V~D~d~~~~d----------------------~w~~L~~~~-~g~~~g~i~l~~~~~  365 (379)
                      ++|||+|.+++|                      .|++|.... .....|++.+++.|.
T Consensus        90 ~~V~d~d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~vsl~y~  148 (296)
T 1dqv_A           90 FSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGELNFSLCYL  148 (296)
T ss_dssp             EEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSSCCSCCCEEEEEEEEE
T ss_pred             EEEEEcCCCCCCceEEEEEeccccccccCCccceeeeccccccccccccceEEEEEEec
Confidence            999999988654                      488886433 234578888888875

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=1.2e-14  Score=122.54  Aligned_cols=87  Identities=18%  Similarity=0.255  Sum_probs=72.3

Q ss_pred             cccccccCCcEEEEEEeeccccccc-cc------CCCCCcEEEEEEcC--eeeEeeeccCCCCCCeEeeEEEEEecCC--
Q 016987          255 TSELELKPQGKVAVTIVKANNLKNM-EM------IGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIAEDK--  323 (379)
Q Consensus       255 ~~~l~~~~~g~L~V~V~~A~~L~~~-d~------~g~sdPyv~v~~~~--~~~~~T~v~~~tlnP~Wne~f~f~v~~~--  323 (379)
                      ++..|.+..+.|+|+|++|++|+.+ +.      .+.+||||++++.+  ..+++|+++++++||.|||+|.|.+...  
T Consensus        17 ~~l~y~~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l   96 (147)
T 2enp_A           17 FSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEA   96 (147)
T ss_dssp             EEEEEETTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHH
T ss_pred             EEEEEcCCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHh
Confidence            4455778899999999999999984 33      35899999999974  3578999999999999999999988532  


Q ss_pred             CCceEEEEEEEcccCCCC
Q 016987          324 ETQSLIFEVYIFLLFFPA  341 (379)
Q Consensus       324 ~~~~L~i~V~D~d~~~~d  341 (379)
                      ....|.++|||+|.+++|
T Consensus        97 ~~~~L~~~V~d~d~~~~~  114 (147)
T 2enp_A           97 QRRTLLLTVVDFDKFSRH  114 (147)
T ss_dssp             HHSEEEEEEECCSTTCCS
T ss_pred             ccCEEEEEEEECCCCcCC
Confidence            235899999999998765

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.47  E-value=3.8e-13  Score=135.86  Aligned_cols=102  Identities=20%  Similarity=0.367  Sum_probs=87.4

Q ss_pred             cCCcEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCC
Q 016987          261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFP  340 (379)
Q Consensus       261 ~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~  340 (379)
                      ...|.|+|+|++|++|+++|..|.+||||++++++ .+++|+++++++||.|||+|.|.+.+...+.|.++|||+|.+++
T Consensus       384 ~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~-~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~~  462 (510)
T 3jzy_A          384 SGIGRLMVHVIEATELKACKPNGKSNPYCEISMGS-QSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSP  462 (510)
T ss_dssp             --CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETT-EEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSSSS
T ss_pred             CCCceEEEEeceeecCCCCCCCCCCCeEEEEEECC-eeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCC
Confidence            46789999999999999999999999999999987 68999999999999999999999987767889999999999887


Q ss_pred             C------------------------cEEEcccCCCCceeeEEEEEEEEEEe
Q 016987          341 A------------------------QWVPILNSEYGAALSNMHLIYIYKYL  367 (379)
Q Consensus       341 d------------------------~w~~L~~~~~g~~~g~i~l~~~~~~~  367 (379)
                      |                        .|+++.+.    ..|++.+.+.++.+
T Consensus       463 ~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~----~~G~i~l~~~l~lf  509 (510)
T 3jzy_A          463 DDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEV----PTGEVWVRFDLQLF  509 (510)
T ss_dssp             CCEEEEEEEEHHHHHHHHHHHCSCCEEEECBSS----SSCEEEEEEEEEEC
T ss_pred             CCceEEEEEEHHHhccccCCCCceeeeecCCCC----CCceEEEEEEEEEc
Confidence            5                        48888543    45677777777654

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.41  E-value=9.3e-13  Score=108.90  Aligned_cols=72  Identities=19%  Similarity=0.205  Sum_probs=58.5

Q ss_pred             CCcEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccC-CCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCC
Q 016987          262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVD-NNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFP  340 (379)
Q Consensus       262 ~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~-~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~  340 (379)
                      ..+.|+|+|++|+++..   .|.+||||++. .  +..+|++++ +++||.|||+|.|.+.+. ...|.++|||+| +++
T Consensus         3 ~~~~L~V~V~~A~~l~~---~g~~DPYv~v~-~--~~~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d-~~~   74 (131)
T 2cjt_A            3 VMSLLCVGVKKAKFDGA---QEKFNTYVTLK-V--QNVKSTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKG-LIW   74 (131)
T ss_dssp             CCEEEEEEEEEEECSSC---GGGCEEEEEEE-E--TTEEEECCCEESSSCEEEEEEEEEECCC-SSEEEEEEEECC-SSC
T ss_pred             cceEEEEEEEEeECCCC---CCCcCeEEEEE-e--cCEEEeEecCCCCCceECCEEEEEEeCC-CCeEEEEEEECC-CCC
Confidence            46899999999998853   57899999999 3  234555554 699999999999999864 567999999999 766


Q ss_pred             C
Q 016987          341 A  341 (379)
Q Consensus       341 d  341 (379)
                      |
T Consensus        75 d   75 (131)
T 2cjt_A           75 D   75 (131)
T ss_dssp             E
T ss_pred             C
Confidence            5

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.37  E-value=5.8e-12  Score=103.89  Aligned_cols=99  Identities=12%  Similarity=0.224  Sum_probs=83.3

Q ss_pred             CCcEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccC-CCCCCeEeeEEEEEecCC--CCceEEEEEEEcccC
Q 016987          262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVD-NNLNPVWNQTFELIAEDK--ETQSLIFEVYIFLLF  338 (379)
Q Consensus       262 ~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~-~tlnP~Wne~f~f~v~~~--~~~~L~i~V~D~d~~  338 (379)
                      ..-.|+|++.+|++|+     |++|||+++.+.+ .+++|++++ ++.||.|||.|+|++..+  .+..|.+.|+|++++
T Consensus        19 ~~msL~V~l~~a~~Lp-----g~~Dp~akv~FRg-~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v   92 (144)
T 3l9b_A           19 SHMALIVHLKTVSELR-----GRADRIAKVTFRG-QSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKV   92 (144)
T ss_dssp             CCEEEEEEEEEEESCC-----SCEEEEEEEEETT-EEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTT
T ss_pred             CcEEEEEEEEEecCCC-----CCCCCeEEEEEec-cceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccc
Confidence            3457999999999998     6899999999987 789999998 699999999999998643  467899999999999


Q ss_pred             CCC--------------------cEEEcccCCCCceeeEEEEEEEEEE
Q 016987          339 FPA--------------------QWVPILNSEYGAALSNMHLIYIYKY  366 (379)
Q Consensus       339 ~~d--------------------~w~~L~~~~~g~~~g~i~l~~~~~~  366 (379)
                      +++                    .+-+|.+.+.....+++.+.+.|+-
T Consensus        93 ~~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~n~~~~~a~I~l~l~Y~p  140 (144)
T 3l9b_A           93 FSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLSMEVRYQA  140 (144)
T ss_dssp             SCCEEEEEEEEESHHHHHHSEEEEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred             cCCCEEEEEEEEhHHhccCCeEEEeecccCCCCCccccEEEEEEEecC
Confidence            987                    3567776666666678888888864

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.37  E-value=4.4e-12  Score=130.70  Aligned_cols=104  Identities=21%  Similarity=0.271  Sum_probs=83.9

Q ss_pred             CCcEEEEEEeeccccccccc--CCCCCcEEEEEEcC----eeeEeeeccCCC-CCCeEeeEEEEEecCCCCceEEEEEEE
Q 016987          262 PQGKVAVTIVKANNLKNMEM--IGKSDPYAVVHIKP----LFKVKTNVVDNN-LNPVWNQTFELIAEDKETQSLIFEVYI  334 (379)
Q Consensus       262 ~~g~L~V~V~~A~~L~~~d~--~g~sdPyv~v~~~~----~~~~~T~v~~~t-lnP~Wne~f~f~v~~~~~~~L~i~V~D  334 (379)
                      ..+.|+|+|++|++|+..+.  .|.+||||++.+.+    ..+++|++++++ +||.|||+|.|.+..+....|.++|||
T Consensus       495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D  574 (624)
T 1djx_A          495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVED  574 (624)
T ss_dssp             CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEE
T ss_pred             cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEE
Confidence            56799999999999999884  68899999999843    257899999987 999999999999987656789999999


Q ss_pred             cccCCCC-----------------cEEEcccCCCCceeeEEEEEEEEEE
Q 016987          335 FLLFFPA-----------------QWVPILNSEYGAALSNMHLIYIYKY  366 (379)
Q Consensus       335 ~d~~~~d-----------------~w~~L~~~~~g~~~g~i~l~~~~~~  366 (379)
                      +|.+++|                 .|++|.+. .|+......|.+++.+
T Consensus       575 ~D~~~~dd~iG~~~ipl~~L~~G~r~v~L~d~-~g~~~~~~~L~v~i~~  622 (624)
T 1djx_A          575 YDSSSKNDFIGQSTIPWNSLKQGYRHVHLLSK-NGDQHPSATLFVKISI  622 (624)
T ss_dssp             CCSSSCCEEEEEEEEEGGGBCCEEEEEEEECT-TSCEEEEEEEEEEEEE
T ss_pred             cCCCCCCceeEEEEEEHHHcCCCcEEEeCCCC-CcCCCCceEEEEEEEE
Confidence            9998776                 69999744 5665444444444444

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.35  E-value=9.5e-12  Score=107.14  Aligned_cols=73  Identities=18%  Similarity=0.180  Sum_probs=60.0

Q ss_pred             cCCcEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccC-CCCCCeEeeEEEEEecCCCCceEEEEEEEcccCC
Q 016987          261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVD-NNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFF  339 (379)
Q Consensus       261 ~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~-~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~  339 (379)
                      ...+.|+|+|++|+++.   ..|++||||++. .  +..+|++++ +++||.|||+|.|.+.+. ...|.++|||+| ++
T Consensus        11 g~~~~L~V~V~~A~~l~---~~g~~DPYV~v~-~--~~~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d-~~   82 (167)
T 2cjs_A           11 GILSLLCVGVKKAKFDG---AQEKFNTYVTLK-V--QNVESTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKG-LI   82 (167)
T ss_dssp             SCCCEEEEEEEEEECSS---CGGGCEEEEEEE-E--TTEEEECCCEESSSCEEEEEEEEECCCT-TSEEEEEEEECC-SS
T ss_pred             CceEEEEEEEEEEECCC---CCCCCCeEEEEE-e--cceEEEEecCCCCCCCCCCEEEEEeeCC-CCEEEEEEEECC-CC
Confidence            35789999999999884   257899999999 3  345666665 699999999999999864 567999999999 76


Q ss_pred             CC
Q 016987          340 PA  341 (379)
Q Consensus       340 ~d  341 (379)
                      +|
T Consensus        83 ~d   84 (167)
T 2cjs_A           83 WD   84 (167)
T ss_dssp             CC
T ss_pred             CC
Confidence            66

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.35  E-value=2e-12  Score=120.66  Aligned_cols=83  Identities=31%  Similarity=0.472  Sum_probs=71.6

Q ss_pred             cccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecCCC--CceEEEEE
Q 016987          259 ELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDKE--TQSLIFEV  332 (379)
Q Consensus       259 ~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~~~--~~~L~i~V  332 (379)
                      |.+..+.|.|+|++|++|+.+|..|.+||||++++.+    ..+++|+++++++||.|||+|.|.+....  ...|.++|
T Consensus       145 ~~p~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V  224 (284)
T 2r83_A          145 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTV  224 (284)
T ss_dssp             EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEE
T ss_pred             ecCcCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEE
Confidence            4567899999999999999999989999999999853    24689999999999999999999986532  34799999


Q ss_pred             EEcccCCCC
Q 016987          333 YIFLLFFPA  341 (379)
Q Consensus       333 ~D~d~~~~d  341 (379)
                      ||+|.+++|
T Consensus       225 ~d~d~~~~~  233 (284)
T 2r83_A          225 LDYDKIGKN  233 (284)
T ss_dssp             EECCSSSCC
T ss_pred             EeCCCCCCC
Confidence            999998765

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.26  E-value=7.5e-12  Score=130.36  Aligned_cols=80  Identities=25%  Similarity=0.457  Sum_probs=72.9

Q ss_pred             ccCCcEEEEEEeecccccc---cccCCCCCcEEEEEEcC--eeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEE
Q 016987          260 LKPQGKVAVTIVKANNLKN---MEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYI  334 (379)
Q Consensus       260 ~~~~g~L~V~V~~A~~L~~---~d~~g~sdPyv~v~~~~--~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D  334 (379)
                      ..+.|.|+|+|++|++|+.   +|..|++||||++++.+  ..+++|+++++++||+|||+|.|.+.....+.|.++|||
T Consensus        14 ~~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D   93 (749)
T 1cjy_A           14 HQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMD   93 (749)
T ss_dssp             CCCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEE
T ss_pred             CCCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEE
Confidence            3678999999999999999   88889999999999984  367899999999999999999999987667889999999


Q ss_pred             cccCC
Q 016987          335 FLLFF  339 (379)
Q Consensus       335 ~d~~~  339 (379)
                      +|.++
T Consensus        94 ~D~~~   98 (749)
T 1cjy_A           94 ANYVM   98 (749)
T ss_dssp             CCSSS
T ss_pred             CCCCC
Confidence            99887

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.17  E-value=1.4e-11  Score=115.78  Aligned_cols=84  Identities=33%  Similarity=0.431  Sum_probs=72.2

Q ss_pred             ccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecCC--CCceEEEE
Q 016987          258 LELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLIFE  331 (379)
Q Consensus       258 l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~~--~~~~L~i~  331 (379)
                      .|.+..|.|+|+|++|++|+.+|..|.+||||++++.+    ..+++|+++++++||.|||+|.|.+...  ....|.++
T Consensus       146 ~y~~~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~  225 (296)
T 1dqv_A          146 CYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIA  225 (296)
T ss_dssp             EEETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCE
T ss_pred             EeccccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCcEEEEE
Confidence            34567899999999999999999999999999999862    2578999999999999999999988643  24579999


Q ss_pred             EEEcccCCCC
Q 016987          332 VYIFLLFFPA  341 (379)
Q Consensus       332 V~D~d~~~~d  341 (379)
                      |||+|.+++|
T Consensus       226 V~d~d~~~~~  235 (296)
T 1dqv_A          226 VVDYDCIGHN  235 (296)
T ss_dssp             EEECCSSSCC
T ss_pred             EEeCCCCCCC
Confidence            9999998765

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.10  E-value=2.9e-10  Score=118.73  Aligned_cols=93  Identities=30%  Similarity=0.501  Sum_probs=79.7

Q ss_pred             CCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecCC-CCceEEEEEEEcc
Q 016987          262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDK-ETQSLIFEVYIFL  336 (379)
Q Consensus       262 ~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~~-~~~~L~i~V~D~d  336 (379)
                      ..+.|.|++.+|++|.++|..|.+|||+++++.+    ..+++|+++++++||.|||+|.|.+... ....|.++|||+|
T Consensus       170 ~~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d  249 (674)
T 3pfq_A          170 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWD  249 (674)
T ss_dssp             CSSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECC
T ss_pred             ccceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeecc
Confidence            4789999999999999999999999999999843    2578999999999999999999998643 2456999999999


Q ss_pred             cCCCC-------------------cEEEcccCCCCce
Q 016987          337 LFFPA-------------------QWVPILNSEYGAA  354 (379)
Q Consensus       337 ~~~~d-------------------~w~~L~~~~~g~~  354 (379)
                      .+++|                   .|++|++..+|+.
T Consensus       250 ~~~~dd~iG~~~i~l~~l~~~~~~~w~~Lls~~~g~~  286 (674)
T 3pfq_A          250 LTSRNDFMGSLSFGISELQKAGVDGWFKLLSQEEGEY  286 (674)
T ss_dssp             SSSCCEECCBCCCBTTHHHHCCEEEEEECBCTTGGGT
T ss_pred             cccccccccccccchhhhccCCcccceeeccccccee
Confidence            98775                   6999987766653

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.06  E-value=9.5e-12  Score=124.81  Aligned_cols=69  Identities=14%  Similarity=0.255  Sum_probs=10.3

Q ss_pred             cCCcEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCC---CCCeEeeEEEEEecCCCCceEEEEEEEc
Q 016987          261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNN---LNPVWNQTFELIAEDKETQSLIFEVYIF  335 (379)
Q Consensus       261 ~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~t---lnP~Wne~f~f~v~~~~~~~L~i~V~D~  335 (379)
                      +..|.|+|+|++|++|+++|     ||||++++++....||++++++   +||.|||+|.|.+... .+.|.++|||+
T Consensus         8 r~~~~L~V~VieAk~L~~~d-----dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~-~~~L~v~V~d~   79 (483)
T 3bxj_A            8 RVDNVLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPA-VRALRLHLYRD   79 (483)
T ss_dssp             EEEECC--------------------------------------------------CCEECC----------------
T ss_pred             eeccEEEEEEEEcCCcCCCC-----CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCC-ccEEEEEEEec
Confidence            45789999999999999876     9999999987557799999999   9999999999986543 57899999994

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=98.85  E-value=1.3e-08  Score=107.14  Aligned_cols=98  Identities=18%  Similarity=0.235  Sum_probs=75.0

Q ss_pred             CcEEEEEEeecccccccccCCCCCcEEEEEEcC----e--eeEeeeccCC-CCCCeEeeE-EEEE-ecCCCCceEEEEEE
Q 016987          263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----L--FKVKTNVVDN-NLNPVWNQT-FELI-AEDKETQSLIFEVY  333 (379)
Q Consensus       263 ~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~--~~~~T~v~~~-tlnP~Wne~-f~f~-v~~~~~~~L~i~V~  333 (379)
                      .+.|+|+|++|++|+.    ..+||||++.+.+    .  .+++|+++++ ++||+|||+ |.|. +..++...|.++||
T Consensus       649 ~~~L~V~Visaq~L~~----~~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~  724 (816)
T 3qr0_A          649 AGTIEIKIISAQFLSD----KQISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVS  724 (816)
T ss_dssp             CEEEEEEEEEEECCCS----SCCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEE
T ss_pred             ceEEEEEEEEcccCCC----CCCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEE
Confidence            3689999999999975    3689999999854    1  4679999875 699999998 9998 76655678999999


Q ss_pred             EcccCCCC----------------cEEEcccCCCCceeeEEEEEEEEEEee
Q 016987          334 IFLLFFPA----------------QWVPILNSEYGAALSNMHLIYIYKYLR  368 (379)
Q Consensus       334 D~d~~~~d----------------~w~~L~~~~~g~~~g~i~l~~~~~~~~  368 (379)
                      |+|   .|                .++||.+ ..|+..+.-.|.++....+
T Consensus       725 D~d---ddfiG~~~ipL~~L~~GyR~vpL~~-~~g~~~~~atLfv~i~~~~  771 (816)
T 3qr0_A          725 EEN---GKFIGHRVMPLDGIKPGYRHVPLRN-ESNRPLGLASVFAHIVAKD  771 (816)
T ss_dssp             ETT---SCEEEEEEEESTTCCCEEEEEEEEC-TTSCEEEEEEEEEEEEEEE
T ss_pred             ecC---CCeeeEEEEEHHHcCCcceEEEEeC-CCCCCCCceEEEEEEEEEe
Confidence            986   22                6888874 4666665555555555443

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=98.83  E-value=1.1e-08  Score=107.97  Aligned_cols=97  Identities=18%  Similarity=0.208  Sum_probs=73.0

Q ss_pred             CCcEEEEEEeecccccccccCCCCCcEEEEEEcC-----eeeEeee-ccC-CCCCCeEee-EEEE-EecCCCCceEEEEE
Q 016987          262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP-----LFKVKTN-VVD-NNLNPVWNQ-TFEL-IAEDKETQSLIFEV  332 (379)
Q Consensus       262 ~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~-----~~~~~T~-v~~-~tlnP~Wne-~f~f-~v~~~~~~~L~i~V  332 (379)
                      ..|.|+|+|++|++|+.    +.+||||++.+.+     .++++|+ +++ +++||+||| +|.| .+..++...|.++|
T Consensus       676 ~~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V  751 (799)
T 2zkm_X          676 VATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAV  751 (799)
T ss_dssp             TCEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEE
T ss_pred             eeeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEE
Confidence            35789999999999985    4689999999842     1367899 776 569999999 6999 78666566899999


Q ss_pred             EEcccCCCC----------------cEEEcccCCCCceeeEEEEEEEEEE
Q 016987          333 YIFLLFFPA----------------QWVPILNSEYGAALSNMHLIYIYKY  366 (379)
Q Consensus       333 ~D~d~~~~d----------------~w~~L~~~~~g~~~g~i~l~~~~~~  366 (379)
                      ||+|   .|                .|++|.+. .|+......|.+++.+
T Consensus       752 ~D~d---~d~iG~~~ipl~~L~~G~r~v~L~~~-~g~~~~~~~Lfv~i~~  797 (799)
T 2zkm_X          752 MEEG---NKFLGHRIIPINALNSGYHHLCLHSE-SNMPLTMPALFIFLEM  797 (799)
T ss_dssp             EETT---TEEEEEEEEEGGGBCCEEEEEEEECT-TCCEEEEEEEEEEEEE
T ss_pred             EEeC---CCccceEeeehhhcCCCcEEEeccCC-CCCCCCceEEEEEEEE
Confidence            9996   22                68888744 4554444555555544

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=98.79  E-value=1.6e-08  Score=107.02  Aligned_cols=96  Identities=19%  Similarity=0.227  Sum_probs=70.9

Q ss_pred             cEEEEEEeecccccccccCCCCCcEEEEEEcC-----eeeEeeeccCC-CCCCeEee-EEEEE-ecCCCCceEEEEEEEc
Q 016987          264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP-----LFKVKTNVVDN-NLNPVWNQ-TFELI-AEDKETQSLIFEVYIF  335 (379)
Q Consensus       264 g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~-----~~~~~T~v~~~-tlnP~Wne-~f~f~-v~~~~~~~L~i~V~D~  335 (379)
                      ..|+|+|++|++|+.    ..+||||++.+.+     ..+++|+++++ ++||+||| +|.|. +..++...|.++|||+
T Consensus       725 ~~L~V~Visaq~L~~----~~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D~  800 (885)
T 3ohm_B          725 NALRVKVISGQFLSD----RKVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEE  800 (885)
T ss_dssp             EEEEEEEEEEESCCS----SCCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEET
T ss_pred             eEEEEEEEEeccCcc----cCCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEcC
Confidence            479999999999985    3689999999854     13579999875 59999999 69998 7655567899999999


Q ss_pred             ccCCCC----------------cEEEcccCCCCceeeEEEEEEEEEEe
Q 016987          336 LLFFPA----------------QWVPILNSEYGAALSNMHLIYIYKYL  367 (379)
Q Consensus       336 d~~~~d----------------~w~~L~~~~~g~~~g~i~l~~~~~~~  367 (379)
                      |   .|                .++||.+. .|+....-.|.++..+.
T Consensus       801 d---ddfiG~~~lpL~~L~~GyR~vpL~~~-~g~~l~~atLfv~i~~~  844 (885)
T 3ohm_B          801 G---GKFVGHRILPVSAIRSGYHYVCLRNE-ANQPLCLPALLIYTEAS  844 (885)
T ss_dssp             T---TEEEEEEEEETTTCCCEEEEEEEECT-TSCEEEEEEEEEEEEEE
T ss_pred             C---ccEEeeEEEEHHHcCCCceEEEecCC-CCCccCceEEEEEEEEE
Confidence            7   22                67888644 55553333444444433

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=98.24  E-value=1.1e-05  Score=64.56  Aligned_cols=73  Identities=12%  Similarity=0.114  Sum_probs=52.0

Q ss_pred             CCcEEEEEEeecccccccccCCCCCcEEEEEEcCeee---Eee-eccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcc
Q 016987          262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFK---VKT-NVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFL  336 (379)
Q Consensus       262 ~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~---~~T-~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d  336 (379)
                      ..+.|+|...++.--.-+......||||.+.+.....   .+| ..+++|.+|.|||+|.-.+++  ++.|.+.|++..
T Consensus         4 m~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a   80 (126)
T 1yrk_A            4 MAPFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAA   80 (126)
T ss_dssp             CCCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT--TCEEEEEEEEET
T ss_pred             cCccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC--CEEEEEEEEcCC
Confidence            4567888886654321111223579999999876322   255 677889999999999998876  688999999643

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=98.08  E-value=1.2e-05  Score=65.21  Aligned_cols=73  Identities=12%  Similarity=0.107  Sum_probs=52.7

Q ss_pred             CCcEEEEEEeecccccccc-cCCCCCcEEEEEEcCeee---Eee-eccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcc
Q 016987          262 PQGKVAVTIVKANNLKNME-MIGKSDPYAVVHIKPLFK---VKT-NVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFL  336 (379)
Q Consensus       262 ~~g~L~V~V~~A~~L~~~d-~~g~sdPyv~v~~~~~~~---~~T-~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d  336 (379)
                      ..+.|+|...++.--+-.. .....||||.+.+.....   .+| ..+++|..|.|||+|.-.+++  ++.|.+.|++..
T Consensus         8 m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a   85 (138)
T 2enj_A            8 MSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK--GRVMQIIVKGKN   85 (138)
T ss_dssp             CCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS--SCEEEEEEECSS
T ss_pred             cCcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC--CeEEEEEEEcCC
Confidence            4677888887765432221 122579999999876323   666 666779999999999988875  688999999543

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=89.69  E-value=5.2  Score=34.95  Aligned_cols=67  Identities=18%  Similarity=0.182  Sum_probs=45.4

Q ss_pred             eeEeeeccCCCCCCeEeeEEEEEecC--CCCceEEEEEEEcccCC-CC--------cEEEcccCCCCc--eeeEEEEEEE
Q 016987          297 FKVKTNVVDNNLNPVWNQTFELIAED--KETQSLIFEVYIFLLFF-PA--------QWVPILNSEYGA--ALSNMHLIYI  363 (379)
Q Consensus       297 ~~~~T~v~~~tlnP~Wne~f~f~v~~--~~~~~L~i~V~D~d~~~-~d--------~w~~L~~~~~g~--~~g~i~l~~~  363 (379)
                      ..++|.+...+.+|.|+|++.+.+..  .....|.+++++.-.-. +|        .|+||.+.. |.  ..|.=.|.+ 
T Consensus        77 se~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~~d-G~~L~DG~H~L~v-  154 (220)
T 3l4c_A           77 SEYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMRYD-GTTLRDGEHDLIV-  154 (220)
T ss_dssp             SCEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBCTT-SCBCCSEEEEEEE-
T ss_pred             eeEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEcccCC-CcEEccCCEEEEE-
Confidence            45788888889999999999888753  34667999998654321 22        699998543 33  345444433 


Q ss_pred             EE
Q 016987          364 YK  365 (379)
Q Consensus       364 ~~  365 (379)
                      ||
T Consensus       155 yk  156 (220)
T 3l4c_A          155 YK  156 (220)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A

Probab=84.60  E-value=0.92  Score=28.09  Aligned_cols=24  Identities=33%  Similarity=0.581  Sum_probs=17.3

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHh
Q 016987            2 GLISGVFMGMIFGIALMAGWRHMM   25 (379)
Q Consensus         2 ~~~~g~~~g~~~~l~l~~~~~~~~   25 (379)
                      |-|+|.++|.+.|++++.+..+++
T Consensus        11 GaIAGiVvG~v~gv~li~~l~~~~   34 (38)
T 2k1k_A           11 GEIVAVIFGLLLGAALLLGILVFR   34 (38)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CceeeeehHHHHHHHHHHHHHHHH
Confidence            347888899988888777655444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	379
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	2e-12
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	2e-11
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	2e-11
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	2e-11
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	2e-11
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	5e-11
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	2e-10
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	5e-10
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	6e-10
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	1e-08
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	1e-08
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	3e-08
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	4e-08
d1dqva1	130	b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus	9e-08
d1wfma_	138	b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie	3e-07
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	1e-06
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	2e-06
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	3e-06
d2zkmx2	122	b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human	4e-05

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 61.7 bits (149), Expect = 2e-12
 Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 1/75 (1%)

Query: 261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIA 320
            P G + V +V A  L++ + +   DPY  +  +   +           P WN+TF    
Sbjct: 7   GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTV 66

Query: 321 EDKETQSLIFEVYIF 335
            +  T+    +++  
Sbjct: 67  SEGTTEL-KAKIFDK 80

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.0 bits (142), Expect = 2e-11
 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 7/78 (8%)

Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFK----VKTNVVDNNLNPVWNQTFEL 318
             ++ VTI+ A +L + E     +PY  ++  P        +T  V   L P WNQTF  
Sbjct: 13  GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIY 72

Query: 319 IA---EDKETQSLIFEVY 333
                 +   + L   ++
Sbjct: 73  SPVHRREFRERMLEITLW 90

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.3 bits (143), Expect = 2e-11
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 6/77 (7%)

Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQT--F 316
              + V ++KA +L   ++ G SDPY  V++      + K KT+V     N V+N+   F
Sbjct: 14  TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVF 73

Query: 317 ELIAEDKETQSLIFEVY 333
           ++  E  E  S+ F V 
Sbjct: 74  DIPCESLEEISVEFLVL 90

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.9 bits (142), Expect = 2e-11
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 5/76 (6%)

Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFK----VKTNVVDNNLNPVWNQTFEL 318
           +  + V +  A NL  M+  G SDPY  + + P  K     KT  +  +LNP WN+TF  
Sbjct: 14  REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRF 73

Query: 319 -IAEDKETQSLIFEVY 333
            + E  + + L  E++
Sbjct: 74  QLKESDKDRRLSVEIW 89

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.4 bits (143), Expect = 2e-11
 Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 9/96 (9%)

Query: 249 GGIPVDTSELELK-----PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHI----KPLFKV 299
           GGI     ++          GK+ V I++A NLK M++ G SDPY  +H+    K L K 
Sbjct: 5   GGILEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKK 64

Query: 300 KTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIF 335
           KT +  N LNP +N++F      ++ Q +   V + 
Sbjct: 65  KTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVL 100

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.8 bits (139), Expect = 5e-11
 Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 4/76 (5%)

Query: 262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQ--TFE 317
              ++ V I++A  L  ++M G SDPY  V + P    K +T V    LNPV+N+  TF+
Sbjct: 32  QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFK 91

Query: 318 LIAEDKETQSLIFEVY 333
           +   +   ++L+  VY
Sbjct: 92  VPYSELGGKTLVMAVY 107

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.4 bits (135), Expect = 2e-10
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLF----KVKTNVVDNNLNPVWNQT--F 316
           QG + V I++  +L  M+  G SDP+  + +KP      K KT +    LNP +N+   +
Sbjct: 14  QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY 73

Query: 317 ELIAEDKETQSLIFEVY 333
           ++   D   +SL   V+
Sbjct: 74  DIKHSDLAKKSLDISVW 90

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.2 bits (132), Expect = 5e-10
 Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 11/93 (11%)

Query: 252 PVDTSELELK-----PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTN 302
             D  EL          G + VTI+KA+NLK M++ G SDPY    +      L K KT+
Sbjct: 3   KADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTS 62

Query: 303 VVDNNLNPVWNQT--FELIAEDKETQSLIFEVY 333
           +  N LNP +N+   F++  E  E   L   V 
Sbjct: 63  IKKNTLNPTYNEALVFDVAPESVENVGLSIAVV 95

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (131), Expect = 6e-10
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 5/75 (6%)

Query: 264 GKVAVTIVKANNLKN---MEMIGKSDPYAVVHI--KPLFKVKTNVVDNNLNPVWNQTFEL 318
            K  V +++A  +      +M+   DPY  + I   P  + +T   +N++NPVWN+TFE 
Sbjct: 3   HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62

Query: 319 IAEDKETQSLIFEVY 333
           I +  +   L   + 
Sbjct: 63  ILDPNQENVLEITLM 77

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.4 bits (122), Expect = 1e-08
 Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 20/103 (19%)

Query: 252 PVDTSELELK---PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL------------ 296
           P+ T E++L+     G + + I++A NL   +  G SDP+  V++ P             
Sbjct: 4   PI-TGEIQLQINYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASA 62

Query: 297 -FKVKTNVVDNNLNPVWNQTF---ELIAEDKETQSLIFEVYIF 335
            +K +T  V  +LNP WNQT     +  E    ++L   V+ +
Sbjct: 63  EYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDY 105

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (121), Expect = 1e-08
 Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 2/75 (2%)

Query: 259 ELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFEL 318
           ++K  G + V ++KA +L   +  GKSDP+ ++ +    +++T+ V  NLNP WN+ F  
Sbjct: 1   DVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGN-DRLQTHTVYKNLNPEWNKVFTF 59

Query: 319 IAEDKETQSLIFEVY 333
             +D     L   V+
Sbjct: 60  PIKDI-HDVLEVTVF 73

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.8 bits (118), Expect = 3e-08
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 8/80 (10%)

Query: 261 KPQGKVAVTIVKANNL--KNMEMIGKSDPYAVVHIKPL----FKVKTNVV-DNNLNPVWN 313
           +P+ ++ V I+    L   N       DP  +V I  +       +T V+ +N  NP W+
Sbjct: 2   RPE-RLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWD 60

Query: 314 QTFELIAEDKETQSLIFEVY 333
             FE      +   + F V 
Sbjct: 61  MEFEFEVTVPDLALVRFMVE 80

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (118), Expect = 4e-08
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 6/78 (7%)

Query: 262 PQGKVAVTIVKANNLKNMEMIGK-SDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFEL 318
            +    V I +A  L  M+     SDPY  + I P    KVKT V+   L+P +++TF  
Sbjct: 20  ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTF 79

Query: 319 I---AEDKETQSLIFEVY 333
                   +  +L F + 
Sbjct: 80  YGIPYTQIQELALHFTIL 97

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.4 bits (114), Expect = 9e-08
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL--FKVKTNVVDNNLNPVWNQT--FE 317
              ++ V I++A +L   +  G SDPY  +++ P    K +T V    LNP++N+T  F 
Sbjct: 16  GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFS 75

Query: 318 LIAEDKETQSLIFEVY 333
           +   +   + L F VY
Sbjct: 76  VPLAELAQRKLHFSVY 91

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (110), Expect = 3e-07
 Identities = 11/78 (14%), Positives = 27/78 (34%), Gaps = 6/78 (7%)

Query: 261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP---LFKVKTNVVDNNLNPVWNQTFE 317
             + ++ VT ++A         G  D Y    +       + +T +    L+  W +   
Sbjct: 23  CQKAELFVTRLEA---VTSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLV 79

Query: 318 LIAEDKETQSLIFEVYIF 335
           L   ++E  +    + + 
Sbjct: 80  LPLAEEELPTATLTLTLR 97

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (107), Expect = 1e-06
 Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFEL 318
           + ++ +T++ A   +N +      PY  V +      KT   +N  +P W Q   +
Sbjct: 5   KSQLQITVISAKLKENKKNWFGPSPYVEVTVDG-QSKKTEKCNNTNSPKWKQPLTV 59

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.4 bits (104), Expect = 2e-06
 Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 5/62 (8%)

Query: 268 VTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQS 327
           V + KA          K + Y  + ++   K  T +      P W Q F       +   
Sbjct: 6   VGVKKAKFDGAQ---EKFNTYVTLKVQN-VKSTT-IAVRGSQPSWEQDFMFEINRLDLGL 60

Query: 328 LI 329
            +
Sbjct: 61  TV 62

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 44.1 bits (103), Expect = 3e-06
 Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 11/77 (14%)

Query: 264 GKVAVTIVKANNLKNMEM-----------IGKSDPYAVVHIKPLFKVKTNVVDNNLNPVW 312
           G + + I +A +LK                   DPY  +++      +T       +P W
Sbjct: 6   GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAW 65

Query: 313 NQTFELIAEDKETQSLI 329
           +  F     +     L 
Sbjct: 66  HDEFVTDVCNGRKIELA 82

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (95), Expect = 4e-05
 Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 13/94 (13%)

Query: 266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPL-------FKVKTNVVDNNLNPVWNQT--F 316
           +++T++    L           Y  V +  L       ++ K +   N++NPVW +    
Sbjct: 3   LSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFV 58

Query: 317 ELIAEDKETQSLIFEVYIFLLFFPAQWVPILNSE 350
                  E  SL   V      F    +  +N+ 
Sbjct: 59  FEKILMPELASLRVAVMEEGNKFLGHRIIPINAL 92

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	379
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.78
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.75
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.67
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.64
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.62
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.62
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.61
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.6
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.59
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.52
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.52
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.51
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.51
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.51
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.5
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.44
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.43
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.42
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.31
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.1
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	85.37

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=3.7e-19  Score=144.67  Aligned_cols=104  Identities=27%  Similarity=0.345  Sum_probs=90.5

Q ss_pred             cCCcEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCC
Q 016987          261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFP  340 (379)
Q Consensus       261 ~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~  340 (379)
                      ++.|.|+|+|++|++|+.++..|.+||||++++++ .+++|++++++.||.|||+|.|.+.+. .+.|.++|||+|.+++
T Consensus         3 ~~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~-~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~~~   80 (126)
T d2ep6a1           3 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGN-DRLQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDEDGDKP   80 (126)
T ss_dssp             CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETT-EEEECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEEETTEE
T ss_pred             CccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCC-eEEEEEeeCCceeEEEEEEEEEEEecc-CceeEEEEEEccCCcC
Confidence            57899999999999999999999999999999998 689999999999999999999999875 5789999999998766


Q ss_pred             C------------------cEEEcccCC-CCceeeEEEEEEEEEE
Q 016987          341 A------------------QWVPILNSE-YGAALSNMHLIYIYKY  366 (379)
Q Consensus       341 d------------------~w~~L~~~~-~g~~~g~i~l~~~~~~  366 (379)
                      |                  .|+.|.... +++..|++++++++-|
T Consensus        81 d~~lG~~~i~l~~l~~~~~~~~~l~~~~~~~~~~G~i~l~~~~i~  125 (126)
T d2ep6a1          81 PDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYLEMDLIY  125 (126)
T ss_dssp             EEECCBCEEEGGGCCSSCCEECCCBCSCTTSCCSSEEEEEEEEEE
T ss_pred             cceEEEEEEEHHHCCCCCceEEEccccCCCCceeEEEEEEEEEEE
Confidence            4                  688875432 4556799999888764

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.75  E-value=4.2e-18  Score=140.12  Aligned_cols=102  Identities=20%  Similarity=0.342  Sum_probs=88.7

Q ss_pred             ccCCcEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccC-CCCCCeEeeEEEEEecCCCCceEEEEEEEcccC
Q 016987          260 LKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVD-NNLNPVWNQTFELIAEDKETQSLIFEVYIFLLF  338 (379)
Q Consensus       260 ~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~-~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~  338 (379)
                      ..+.|+|+|+|++|++|+.++..|++||||++++++ ..++|++++ ++.||.|||+|.|.+.+. ...|.++|||+|.+
T Consensus         6 ~~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~-~~~~t~~~~~~~~nP~Wne~f~f~v~~~-~~~L~v~V~d~d~~   83 (136)
T d1wfja_           6 SGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRT-QDQKSNVAEGMGTTPEWNETFIFTVSEG-TTELKAKIFDKDVG   83 (136)
T ss_dssp             CCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSS-CEEECCCCTTCCSSCEEEEEEEEEEESS-CCEEEEEECCSSSC
T ss_pred             CCCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEee-eeEEEEEEecCCCcEEEeeEEEEEEcCc-cceEEEEEEEecCC
Confidence            367899999999999999999999999999999988 567777776 589999999999999874 56799999999998


Q ss_pred             CCC---------------------cEEEcccCCCCceeeEEEEEEEEE
Q 016987          339 FPA---------------------QWVPILNSEYGAALSNMHLIYIYK  365 (379)
Q Consensus       339 ~~d---------------------~w~~L~~~~~g~~~g~i~l~~~~~  365 (379)
                      ++|                     .|+++.  +.++..|+++++++|+
T Consensus        84 ~~d~~iG~~~i~L~~l~~~~~~~~~~~~l~--~~~~~~G~i~l~l~~~  129 (136)
T d1wfja_          84 TEDDAVGEATIPLEPVFVEGSIPPTAYNVV--KDEEYKGEIWVALSFK  129 (136)
T ss_dssp             TTTCCSEEEEEESHHHHHHSEEEEEEEEEE--ETTEEEEEEEEEEEEE
T ss_pred             CCCCEEEEEEEEhHHhcccCCcCcEEEEec--CCCccCEEEEEEEEEE
Confidence            876                     688884  4567889999999886

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=7.7e-17  Score=131.78  Aligned_cols=93  Identities=30%  Similarity=0.497  Sum_probs=79.9

Q ss_pred             CCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecCCC-CceEEEEEEEcc
Q 016987          262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDKE-TQSLIFEVYIFL  336 (379)
Q Consensus       262 ~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~~~-~~~L~i~V~D~d  336 (379)
                      ..+.|+|+|++|+||+.+|..|.+||||++++.+    ..+++|++++++.||.|||+|.|.+.+.. ...|.++|||+|
T Consensus        13 ~~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d   92 (132)
T d1a25a_          13 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWD   92 (132)
T ss_dssp             SSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECC
T ss_pred             cCCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecC
Confidence            4689999999999999999999999999999832    35789999999999999999999986532 457999999999


Q ss_pred             cCCCC-------------------cEEEcccCCCCce
Q 016987          337 LFFPA-------------------QWVPILNSEYGAA  354 (379)
Q Consensus       337 ~~~~d-------------------~w~~L~~~~~g~~  354 (379)
                      .+++|                   .||+|.+.++|+.
T Consensus        93 ~~~~d~~iG~~~i~l~~l~~~~~~~W~~L~~~~~ge~  129 (132)
T d1a25a_          93 LTSRNDFMGSLSFGISELQKAGVDGWFKLLSQEEGEY  129 (132)
T ss_dssp             SSSCCEEEEEEEEEHHHHTTCCEEEEEECBCHHHHTT
T ss_pred             CCCCCcEeEEEEEeHHHcCCCCCCeEEECCCCCCCcc
Confidence            98876                   6999987666664

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.64  E-value=9.3e-16  Score=125.93  Aligned_cols=77  Identities=17%  Similarity=0.192  Sum_probs=67.9

Q ss_pred             CcEEEEEEeecccccccc-----------cCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEE
Q 016987          263 QGKVAVTIVKANNLKNME-----------MIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFE  331 (379)
Q Consensus       263 ~g~L~V~V~~A~~L~~~d-----------~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~  331 (379)
                      .|.|+|+|.+|++|++.+           ..+.+||||++++++....+|+++.++.||.|||+|.|.+.+  .+.|.++
T Consensus         5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~--~~~l~i~   82 (136)
T d1gmia_           5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCN--GRKIELA   82 (136)
T ss_dssp             EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE--ECEEEEE
T ss_pred             EEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEec--CCceEEE
Confidence            699999999999998764           345789999999998666789999999999999999999975  4689999


Q ss_pred             EEEcccCCCC
Q 016987          332 VYIFLLFFPA  341 (379)
Q Consensus       332 V~D~d~~~~d  341 (379)
                      |||+|.+++|
T Consensus        83 V~d~~~~~~d   92 (136)
T d1gmia_          83 VFHDAPIGYD   92 (136)
T ss_dssp             EEECCSSSSC
T ss_pred             EEEecCCCCc
Confidence            9999998876

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=5.9e-16  Score=125.24  Aligned_cols=98  Identities=20%  Similarity=0.326  Sum_probs=79.4

Q ss_pred             CcEEEEEEeeccccccc---ccCCCCCcEEEEEEcC--eeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEccc
Q 016987          263 QGKVAVTIVKANNLKNM---EMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLL  337 (379)
Q Consensus       263 ~g~L~V~V~~A~~L~~~---d~~g~sdPyv~v~~~~--~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~  337 (379)
                      .+.|+|+|++|+||+..   |..|.+||||++.+++  .++++|+++.++.||.|||+|.|.+.+.....|.++|||+|.
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~   81 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCC
Confidence            46899999999999864   4568899999999975  357899999999999999999999987767789999999998


Q ss_pred             CCCC-------------------cEEEcccCCCCceeeEEEEEEEE
Q 016987          338 FFPA-------------------QWVPILNSEYGAALSNMHLIYIY  364 (379)
Q Consensus       338 ~~~d-------------------~w~~L~~~~~g~~~g~i~l~~~~  364 (379)
                      .+.+                   .||+|.+.    ..|++++++.+
T Consensus        82 ~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~----~~g~i~~~l~~  123 (126)
T d1rlwa_          82 VMDETLGTATFTVSSMKVGEKKEVPFIFNQV----TEMVLEMSLEV  123 (126)
T ss_dssp             SCCEEEEEEEEEGGGSCTTCEEEEEEEETTT----EEEEEEEEEEC
T ss_pred             CCCCeEEEEEEEHHHccCCCeEEEEEEccCC----CeEEEEEEEEE
Confidence            7654                   69998432    23555555543

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=3.3e-15  Score=121.72  Aligned_cols=103  Identities=20%  Similarity=0.265  Sum_probs=77.4

Q ss_pred             cEEEEEEeeccccccc--ccCCCCCcEEEEEEcC----eeeEeeeccCC-CCCCeEeeEEEEEecCCCCceEEEEEEEcc
Q 016987          264 GKVAVTIVKANNLKNM--EMIGKSDPYAVVHIKP----LFKVKTNVVDN-NLNPVWNQTFELIAEDKETQSLIFEVYIFL  336 (379)
Q Consensus       264 g~L~V~V~~A~~L~~~--d~~g~sdPyv~v~~~~----~~~~~T~v~~~-tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d  336 (379)
                      ..|+|+|++|++|+..  +..+++||||++++.+    ..+++|+++++ ++||.|||+|.|.+.......|.++|||+|
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d   83 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYD   83 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECC
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEec
Confidence            4699999999999754  4567899999999832    36788887764 589999999999987666678999999999


Q ss_pred             cCCCC-----------------cEEEcccCCCCceeeEEEEEEEEEEe
Q 016987          337 LFFPA-----------------QWVPILNSEYGAALSNMHLIYIYKYL  367 (379)
Q Consensus       337 ~~~~d-----------------~w~~L~~~~~g~~~g~i~l~~~~~~~  367 (379)
                      .+++|                 .|++|.+ ..|+......|.+++.+.
T Consensus        84 ~~~~d~~iG~~~i~l~~l~~g~~~~~L~~-~~g~~~~~~~L~v~i~~~  130 (131)
T d1qasa2          84 SSSKNDFIGQSTIPWNSLKQGYRHVHLLS-KNGDQHPSATLFVKISIQ  130 (131)
T ss_dssp             TTTCCEEEEEEEEEGGGBCCEEEEEEEEC-TTSCEEEEEEEEEEEEEE
T ss_pred             CCCCCcEEEEEEEEEeccCCCCEEEECCC-CCcCCCCCCEEEEEEEEE
Confidence            99876                 5899874 446655544555555543

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=8e-16  Score=125.31  Aligned_cols=88  Identities=30%  Similarity=0.387  Sum_probs=75.8

Q ss_pred             ccccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC--eeeEeeeccCCCCCCeEeeEEEEEecCC--CCceEE
Q 016987          254 DTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLI  329 (379)
Q Consensus       254 d~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~--~~~~~T~v~~~tlnP~Wne~f~f~v~~~--~~~~L~  329 (379)
                      .++..|.+..+.|+|+|++|+||+.++..|.+||||++++.+  ..+++|++++++.||.|||+|.|.+...  ....|.
T Consensus         8 ~~sl~y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~   87 (130)
T d1dqva1           8 SFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLH   87 (130)
T ss_dssp             EEEEECCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCE
T ss_pred             EEEEEEECCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEE
Confidence            345557788999999999999999999899999999999853  3578999999999999999999998542  356799


Q ss_pred             EEEEEcccCCCC
Q 016987          330 FEVYIFLLFFPA  341 (379)
Q Consensus       330 i~V~D~d~~~~d  341 (379)
                      ++|||+|.+++|
T Consensus        88 v~V~d~~~~~~d   99 (130)
T d1dqva1          88 FSVYDFDRFSRH   99 (130)
T ss_dssp             EEEEECCSSSCC
T ss_pred             EEEEEcCCCCCC
Confidence            999999988776

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=4.2e-15  Score=121.43  Aligned_cols=76  Identities=21%  Similarity=0.334  Sum_probs=68.1

Q ss_pred             CcEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC
Q 016987          263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA  341 (379)
Q Consensus       263 ~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d  341 (379)
                      .+.|.|+|++|++++.++..+++||||++.+++ ++++|++++++.||.|||.|.|.+.+  .+.|.++|||+|.+++|
T Consensus         5 ~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~-~~~kT~v~~~t~nP~wne~f~f~~~~--~~~l~~~V~d~d~~~~d   80 (133)
T d2nq3a1           5 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDG-QSKKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKSD   80 (133)
T ss_dssp             CEEEEEEEEEEEECCCC--CCCCCEEEEEEETT-EEEECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSSSCC
T ss_pred             ceEEEEEEEEeECCCcCCCCCCcCeEEEEEECC-eEEeeEEEEecccEEEcceEEEEEEe--cceeEEEEEEccCCCCC
Confidence            478999999999999988888999999999998 68999999999999999999999875  46899999999999886

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=1.7e-15  Score=125.37  Aligned_cols=87  Identities=31%  Similarity=0.395  Sum_probs=74.9

Q ss_pred             cccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC--eeeEeeeccCCCCCCeEeeEEEEEecC--CCCceEEE
Q 016987          255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIAED--KETQSLIF  330 (379)
Q Consensus       255 ~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~--~~~~~T~v~~~tlnP~Wne~f~f~v~~--~~~~~L~i  330 (379)
                      ++..|....+.|+|+|++|+||+.++..|.+||||++++.+  ..+++|++++++.||.|||+|.|.+..  .....|.+
T Consensus        25 ~sl~y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i  104 (143)
T d1rsya_          25 YSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVM  104 (143)
T ss_dssp             EEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEE
T ss_pred             EEEEEeCCCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEE
Confidence            44557788999999999999999999889999999999843  356899999999999999999998743  24578999


Q ss_pred             EEEEcccCCCC
Q 016987          331 EVYIFLLFFPA  341 (379)
Q Consensus       331 ~V~D~d~~~~d  341 (379)
                      +|||+|.++++
T Consensus       105 ~V~d~d~~~~~  115 (143)
T d1rsya_         105 AVYDFDRFSKH  115 (143)
T ss_dssp             EEEECCSSSCC
T ss_pred             EEEEcCCCCCC
Confidence            99999998776

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=2.4e-14  Score=117.56  Aligned_cols=87  Identities=26%  Similarity=0.227  Sum_probs=68.5

Q ss_pred             cccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecCC--CCceE
Q 016987          255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSL  328 (379)
Q Consensus       255 ~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~~--~~~~L  328 (379)
                      ++..|.+..+.|.|+|++|+||+.++..+.+||||++++.+    ..+++|++++++.||.|||+|.|.+...  ....|
T Consensus         6 ~sl~Y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l   85 (138)
T d1w15a_           6 VSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISV   85 (138)
T ss_dssp             EEEEEETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEE
T ss_pred             EEEEEcCCCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEE
Confidence            45567788999999999999999999889999999999832    2457899999999999999999998543  34569


Q ss_pred             EEEEEEcccCCCC
Q 016987          329 IFEVYIFLLFFPA  341 (379)
Q Consensus       329 ~i~V~D~d~~~~d  341 (379)
                      .|+|||+|.++++
T Consensus        86 ~i~v~d~~~~~~~   98 (138)
T d1w15a_          86 EFLVLDSERGSRN   98 (138)
T ss_dssp             EEEEEECCTTSCC
T ss_pred             EEEEEeCCCCCCC
Confidence            9999999998776

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=3.8e-14  Score=114.74  Aligned_cols=71  Identities=24%  Similarity=0.297  Sum_probs=62.1

Q ss_pred             cEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCC
Q 016987          264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFP  340 (379)
Q Consensus       264 g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~  340 (379)
                      +.|.|+|.+|++|.+++   +.||||++.+++ .+.+|++++ +.||.|||+|.|.+.++ .+.|.++|||+|..++
T Consensus         2 ~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~-~k~~T~~~k-~~nP~Wne~f~f~v~~~-~~~L~v~V~d~~~~~d   72 (128)
T d2cjta1           2 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQN-VKSTTIAVR-GSQPSWEQDFMFEINRL-DLGLTVEVWNKGLIWD   72 (128)
T ss_dssp             EEEEEEEEEEECSSCGG---GCEEEEEEEETT-EEEECCCEE-SSSCEEEEEEEEEECCC-SSEEEEEEEECCSSCE
T ss_pred             eEEEEEEEEEECCCCCC---CcCeEEEEEeCC-EEEEEEEec-CCCCeEEEEEEEeeccc-cceEEEEEEeCCCcCC
Confidence            57999999999999877   579999999998 688888876 45999999999999876 5789999999987653

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.5e-14  Score=116.74  Aligned_cols=86  Identities=24%  Similarity=0.240  Sum_probs=68.5

Q ss_pred             cccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEE-ecC--CCCce
Q 016987          255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELI-AED--KETQS  327 (379)
Q Consensus       255 ~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~-v~~--~~~~~  327 (379)
                      ++..|.+..+.|.|+|++|+||+..+..+.+||||++++.+    ..+++|++++++.||.|||+|.|. +..  .....
T Consensus         5 l~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~   84 (125)
T d2bwqa1           5 IKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERM   84 (125)
T ss_dssp             EEEEEETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCE
T ss_pred             EEEEEECCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCE
Confidence            44557788999999999999999999889999999999843    356899999999999999999996 332  23457


Q ss_pred             EEEEEEEcccCCC
Q 016987          328 LIFEVYIFLLFFP  340 (379)
Q Consensus       328 L~i~V~D~d~~~~  340 (379)
                      |.++|||+|.+..
T Consensus        85 L~i~v~d~~~~~~   97 (125)
T d2bwqa1          85 LEITLWDQARVRE   97 (125)
T ss_dssp             EEEEEEEC-----
T ss_pred             EEEEEEECCCCCC
Confidence            9999999997643

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=2.7e-15  Score=123.79  Aligned_cols=80  Identities=30%  Similarity=0.439  Sum_probs=67.6

Q ss_pred             CCcEEEEEEeecccccccccCCCCCcEEEEEEcC-------------eeeEeeeccCCCCCCeEeeEEEEEec---CCCC
Q 016987          262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP-------------LFKVKTNVVDNNLNPVWNQTFELIAE---DKET  325 (379)
Q Consensus       262 ~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~-------------~~~~~T~v~~~tlnP~Wne~f~f~v~---~~~~  325 (379)
                      ..|.|.|+|++|+||+.++..|.+||||++++.+             ..+++|++++++.||.|||+|.|...   +...
T Consensus        16 ~~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~   95 (142)
T d1rh8a_          16 DLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMK   95 (142)
T ss_dssp             ETTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTT
T ss_pred             eCCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCC
Confidence            3689999999999999999999999999999843             12367999999999999999999742   2246


Q ss_pred             ceEEEEEEEcccCCCC
Q 016987          326 QSLIFEVYIFLLFFPA  341 (379)
Q Consensus       326 ~~L~i~V~D~d~~~~d  341 (379)
                      ..|.++|||+|.+++|
T Consensus        96 ~~L~i~V~d~d~~~~~  111 (142)
T d1rh8a_          96 KTLEVTVWDYDRFSSN  111 (142)
T ss_dssp             CEEEEEEEEECSSSCE
T ss_pred             CEEEEEEEEecCCCCC
Confidence            6899999999998775

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=3.7e-14  Score=116.04  Aligned_cols=87  Identities=28%  Similarity=0.367  Sum_probs=74.7

Q ss_pred             cccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecCC--CCceE
Q 016987          255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSL  328 (379)
Q Consensus       255 ~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~~--~~~~L  328 (379)
                      ++..|.+..+.|+|+|.+|+||+.++..+.+||||++++.+    ..+++|++++++.||.|||+|.|.+...  ....|
T Consensus         6 l~l~Y~~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l   85 (137)
T d2cm5a1           6 VSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSL   85 (137)
T ss_dssp             EEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEE
T ss_pred             EEEEEECCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEE
Confidence            44557788999999999999999999889999999999843    3568899999999999999999998543  35679


Q ss_pred             EEEEEEcccCCCC
Q 016987          329 IFEVYIFLLFFPA  341 (379)
Q Consensus       329 ~i~V~D~d~~~~d  341 (379)
                      .+++||+|.+++|
T Consensus        86 ~v~v~~~~~~~~~   98 (137)
T d2cm5a1          86 DISVWDYDIGKSN   98 (137)
T ss_dssp             EEEEEECCSSSCC
T ss_pred             EEEeeeCCCCCCC
Confidence            9999999988776

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=1.9e-14  Score=120.93  Aligned_cols=88  Identities=31%  Similarity=0.414  Sum_probs=75.0

Q ss_pred             ccccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecCC--CCce
Q 016987          254 DTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQS  327 (379)
Q Consensus       254 d~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~~--~~~~  327 (379)
                      .++..|.+..+.|.|+|++|+||+..+..+.+||||++++.+    ..+++|++++++.||.|||+|.|.+...  ....
T Consensus        15 ~~sl~Y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~   94 (157)
T d1uowa_          15 CFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQ   94 (157)
T ss_dssp             EEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCE
T ss_pred             EEEEEEcCCCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcCccE
Confidence            345557788999999999999999999889999999999854    2356899999999999999999998653  3457


Q ss_pred             EEEEEEEcccCCCC
Q 016987          328 LIFEVYIFLLFFPA  341 (379)
Q Consensus       328 L~i~V~D~d~~~~d  341 (379)
                      |.++|||+|.++++
T Consensus        95 l~i~v~d~~~~~~~  108 (157)
T d1uowa_          95 VVVTVLDYDKIGKN  108 (157)
T ss_dssp             EEEEEEECCSSSCC
T ss_pred             EEEEEcccCCCCCC
Confidence            99999999998776

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=3.3e-13  Score=110.59  Aligned_cols=95  Identities=27%  Similarity=0.341  Sum_probs=77.1

Q ss_pred             ccccccccCCcEEEEEEeecccccccccCC-CCCcEEEEEEcC--eeeEeeeccCCCCCCeEeeEEEEEe-cC--CCCce
Q 016987          254 DTSELELKPQGKVAVTIVKANNLKNMEMIG-KSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIA-ED--KETQS  327 (379)
Q Consensus       254 d~~~l~~~~~g~L~V~V~~A~~L~~~d~~g-~sdPyv~v~~~~--~~~~~T~v~~~tlnP~Wne~f~f~v-~~--~~~~~  327 (379)
                      .++..|....+.|+|+|++|+||+.++..+ .+||||++++.+  ..+++|++++++.||.|||+|.|.. ..  .....
T Consensus        12 ~~sl~Y~~~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~   91 (138)
T d1ugka_          12 FFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELA   91 (138)
T ss_dssp             EEEEEEEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCE
T ss_pred             EEEEEEeCCCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccce
Confidence            345567788999999999999999988765 479999999943  4578999999999999999999963 32  22457


Q ss_pred             EEEEEEEcccCCCC-----cEEEccc
Q 016987          328 LIFEVYIFLLFFPA-----QWVPILN  348 (379)
Q Consensus       328 L~i~V~D~d~~~~d-----~w~~L~~  348 (379)
                      |.++|||+|.+++|     ..++|.+
T Consensus        92 L~~~V~d~d~~~~~~~iG~~~i~L~~  117 (138)
T d1ugka_          92 LHFTILSFDRFSRDDIIGEVLIPLSG  117 (138)
T ss_dssp             EEEEEEEECSSCCCCCCEEEEEECTT
T ss_pred             EEEEEEECCCCCCCcEEEEEEEEccc
Confidence            99999999998877     4667744

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.2e-13  Score=111.68  Aligned_cols=85  Identities=15%  Similarity=0.120  Sum_probs=70.7

Q ss_pred             ccccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC---eeeEeeeccCCCCCCeEeeEEEEEecC--CCCceE
Q 016987          254 DTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP---LFKVKTNVVDNNLNPVWNQTFELIAED--KETQSL  328 (379)
Q Consensus       254 d~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~---~~~~~T~v~~~tlnP~Wne~f~f~v~~--~~~~~L  328 (379)
                      .++..|....+.|.|+|++|++|+.   .|.+||||++++.+   ...++|++++++.||.|||+|.|.+..  .....|
T Consensus        16 ~~sl~y~~~~~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L   92 (138)
T d1wfma_          16 HYCLDYDCQKAELFVTRLEAVTSNH---DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATL   92 (138)
T ss_dssp             EEEEEEETTTTEEEEEEEEEECCCC---SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEE
T ss_pred             EEEEEECCCCCEEEEEEEEcCCCCC---CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEE
Confidence            3455577889999999999999953   56789999999854   245789999999999999999999854  346789


Q ss_pred             EEEEEEcccCCCC
Q 016987          329 IFEVYIFLLFFPA  341 (379)
Q Consensus       329 ~i~V~D~d~~~~d  341 (379)
                      .|+|||+|.++++
T Consensus        93 ~~~V~d~~~~~~~  105 (138)
T d1wfma_          93 TLTLRTCDRFSRH  105 (138)
T ss_dssp             EEEEEECCSSCTT
T ss_pred             EEEEeeecccccc
Confidence            9999999998775

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=2.8e-14  Score=118.15  Aligned_cols=89  Identities=33%  Similarity=0.400  Sum_probs=75.3

Q ss_pred             cccccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecC--CCCc
Q 016987          253 VDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAED--KETQ  326 (379)
Q Consensus       253 ~d~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~--~~~~  326 (379)
                      +.++..|.+..|.|.|+|++|+||+..+..+.+||||++++.+    ..+++|++++++.||.|||+|.|.+..  ....
T Consensus         9 l~~sl~Y~~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~   88 (145)
T d1dqva2           9 LNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENV   88 (145)
T ss_dssp             EEEEEEEETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSC
T ss_pred             EEEEEEEcCCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcCCC
Confidence            3455667888999999999999999999889999999999864    235789999999999999999998753  2356


Q ss_pred             eEEEEEEEcccCCCC
Q 016987          327 SLIFEVYIFLLFFPA  341 (379)
Q Consensus       327 ~L~i~V~D~d~~~~d  341 (379)
                      .|.++|||++.+++|
T Consensus        89 ~l~v~v~d~~~~~~~  103 (145)
T d1dqva2          89 GLSIAVVDYDCIGHN  103 (145)
T ss_dssp             CCCCEEEECCSSSCC
T ss_pred             EEEEEEEecCCCCCC
Confidence            799999999998776

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.31  E-value=2.3e-12  Score=103.32  Aligned_cols=65  Identities=14%  Similarity=0.171  Sum_probs=50.3

Q ss_pred             EEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcc
Q 016987          268 VTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFL  336 (379)
Q Consensus       268 V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d  336 (379)
                      |.+..+..++  ...+.+||||++++.+    ...++|+++++|+||+|||+|+|.+.+  .+.|.+.|||+|
T Consensus         9 ~~~~~~~~~~--~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~--~~~l~i~V~d~d   77 (123)
T d1bdya_           9 FNSYELGSLQ--AEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAA   77 (123)
T ss_dssp             EEEEECCTTC--CCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT--TCEEEEEEEEET
T ss_pred             EEEeecccCC--CCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc--ccEEEEEEEEcc
Confidence            3334444443  3468899999999954    234678899999999999999999975  468999999986

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=2.4e-10  Score=91.11  Aligned_cols=96  Identities=19%  Similarity=0.194  Sum_probs=64.2

Q ss_pred             EEEEEEeecccccccccCCCCCcEEEEEEcC-----eeeEeeec--cCCCCCCeEeeE-EEE-EecCCCCceEEEEEEEc
Q 016987          265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKP-----LFKVKTNV--VDNNLNPVWNQT-FEL-IAEDKETQSLIFEVYIF  335 (379)
Q Consensus       265 ~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~-----~~~~~T~v--~~~tlnP~Wne~-f~f-~v~~~~~~~L~i~V~D~  335 (379)
                      +|+|+|++|++|+.+    +.||||++++-+     ..+++|++  ..+++||.|||+ |.+ .+..++...|.+.|||+
T Consensus         2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~   77 (122)
T d2zkmx2           2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEE   77 (122)
T ss_dssp             EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEET
T ss_pred             EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECC
Confidence            689999999999764    479999999831     23344444  467899999976 444 35555556899999998


Q ss_pred             ccC--CC-----------CcEEEcccCCCCceeeEEEEEEEEE
Q 016987          336 LLF--FP-----------AQWVPILNSEYGAALSNMHLIYIYK  365 (379)
Q Consensus       336 d~~--~~-----------d~w~~L~~~~~g~~~g~i~l~~~~~  365 (379)
                      |..  +.           ..|+||.+ +.|+....-.|.++.+
T Consensus        78 d~~~lG~~~ipl~~l~~GyR~vpL~~-~~g~~l~~~~L~v~i~  119 (122)
T d2zkmx2          78 GNKFLGHRIIPINALNSGYHHLCLHS-ESNMPLTMPALFIFLE  119 (122)
T ss_dssp             TTEEEEEEEEEGGGBCCEEEEEEEEC-TTCCEEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEcccCcCCceEEEccC-CCcCCCCCceEEEEEE
Confidence            621  00           06889974 4566544444444443