BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016989
(379 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GGO|A Chain A, Crystal Structure Of Glucose-1-Phosphate
Thymidylyltransferase From Sulfolobus Tokodaii
pdb|2GGQ|A Chain A, Complex Of Hypothetical Glucose-1-Phosphate
Thymidylyltransferase From Sulfolobus Tokodaii
Length = 401
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 86/203 (42%), Gaps = 30/203 (14%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRIYLVGFYEEREFALYVS 70
A I+ G G R P++ PK P+ +P++ + I ++ + R+ + VS
Sbjct: 3 AFILAAGS--GERLEPITHTRPKAFVPILSKPLIEYQIEYLRKCGI------RDITVIVS 54
Query: 71 SISNEL------RIPVRYLRED-KPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPL 123
S + E I + ++D K G+A F D + F ++C L
Sbjct: 55 SKNKEYFEKKLKEISIVTQKDDIKGTGAAILSAKFNDEALIIYGDLFFSNEKEICNIITL 114
Query: 124 PEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGV 183
E I+ +KVS + +G LV D + N L EKPE S+LIN G+
Sbjct: 115 KE-----------NAIIGVKVS--NPKDYGVLVLD-NQNNLSKIIEKPEIPPSNLINAGI 160
Query: 184 YVFTPDIFNAIQGVS-SQRKDRE 205
Y DIF + +S S+R + E
Sbjct: 161 YKLNSDIFTYLDKISISERGELE 183
>pdb|3JUJ|A Chain A, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUJ|B Chain B, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUJ|C Chain C, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUJ|D Chain D, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUK|A Chain A, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
pdb|3JUK|B Chain B, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
pdb|3JUK|C Chain C, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
pdb|3JUK|D Chain D, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
Length = 281
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 87/208 (41%), Gaps = 37/208 (17%)
Query: 21 GTRFRPLSLNIPKPLFPLGGQPMVHHPI-----SACKRIYLVGFYEEREFALY------- 68
GTRF P++ IPK + P+ +P++ + + + C+ + +V +R Y
Sbjct: 13 GTRFLPITKTIPKEMLPIVDKPLIQYAVEEAMEAGCEVMAIVTGRNKRSLEDYFDTSYEI 72
Query: 69 ------------VSSISNEL-RIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNC 115
+ SI N + + Y+R+ + G A+ LI N +L
Sbjct: 73 EHQIQGTNKENALKSIRNIIEKCCFSYVRQKQMKGLGHAILTGEALI--GNEPFAVILAD 130
Query: 116 DVCCSFPLP----EMLDAHRNYGGMGTILVIKVSAESASQFGELVA---DPDTNELLHYT 168
D+C S P +M ++ Y + + +V+ E S++G + + E+
Sbjct: 131 DLCISHDHPSVLKQMTSLYQKY-QCSIVAIEEVALEEVSKYGVIRGEWLEEGVYEIKDMV 189
Query: 169 EKP--ETFVSDLINCGVYVFTPDIFNAI 194
EKP E S+L G Y+ TPDIF +
Sbjct: 190 EKPNQEDAPSNLAVIGRYILTPDIFEIL 217
>pdb|3HL3|A Chain A, 2.76 Angstrom Crystal Structure Of A Putative
Glucose-1-Phosphate Thymidylyltransferase From Bacillus
Anthracis In Complex With A Sucrose.
pdb|4ECM|A Chain A, 2.3 Angstrom Crystal Structure Of A Glucose-1-Phosphate
Thymidylyltransferase From Bacillus Anthracis In Complex
With Thymidine-5-Diphospho-Alpha-D-Glucose And
Pyrophosphate
Length = 269
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 79/190 (41%), Gaps = 14/190 (7%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREF 65
+I+ GG G+R P++ K L P+G PM++H + K+ I ++ E
Sbjct: 27 GIILAGGT--GSRLYPITKVTNKHLLPVGRYPMIYHAVYKLKQCDITDIMIITGKEHMGD 84
Query: 66 ALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPE 125
+ E + Y +DK G A AL D + N + +L ++ P
Sbjct: 85 VVSFLGSGQEFGVSFTYRVQDKAGGIAQALGLCEDFV--GNDRMVVILGDNIFSDDIRPY 142
Query: 126 MLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVYV 185
+ + G +L S + +FG VA+ +++ EKP+ S G+Y+
Sbjct: 143 VEEFTNQKEGAKVLL---QSVDDPERFG--VANIQNRKIIEIEEKPKEPKSSYAVTGIYL 197
Query: 186 FTPDIFNAIQ 195
+ +F+ I+
Sbjct: 198 YDSKVFSYIK 207
>pdb|1MC3|A Chain A, Crystal Structure Of Rffh
pdb|1MC3|B Chain B, Crystal Structure Of Rffh
Length = 296
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/236 (21%), Positives = 95/236 (40%), Gaps = 41/236 (17%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPIS-----ACKRIYLVGFYEEREF 65
+I+ GG GTR P++ + K L P+ +P +++P+S + I ++ E++ +
Sbjct: 6 GIILAGG--SGTRLHPITRGVSKQLLPIYDKPXIYYPLSVLXLAGIREILIITTPEDKGY 63
Query: 66 ALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPE 125
+ +E I + Y + P G A A +I E LN + C
Sbjct: 64 FQRLLGDGSEFGIQLEYAEQPSPDGLAQAF-----IIGET------FLNGEPSC------ 106
Query: 126 MLDAHRNYGGMG---TILVIKVSAESASQFGELVADPDTNELLHY---------TEKPET 173
++ + G G + + E A+ FG V DP+ ++ + EKP+
Sbjct: 107 LVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVXDPERFGVVEFDDNFRAISLEEKPKQ 166
Query: 174 FVSDLINCGVYVFTPDIFNAIQGVS-SQRKDRENLRRVSSFEALQSATRNLTTDFV 228
S+ G+Y + + + V S+R + E ++S NLT + +
Sbjct: 167 PKSNWAVTGLYFYDSKVVEYAKQVKPSERGELE----ITSINQXYLEAGNLTVELL 218
>pdb|1H5S|D Chain D, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 84/186 (45%), Gaps = 14/186 (7%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPIS-----ACKRIYLVGFYEEREF 65
+I+ GG GTR P+++ + K L P+ +PM+++P+S + I ++ ++
Sbjct: 6 GIILAGG--SGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPR 63
Query: 66 ALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPE 125
+ ++ + ++Y + P G A A + I D+ + +L ++ LP+
Sbjct: 64 FQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGADDCA--LVLGDNIFYGHDLPK 121
Query: 126 MLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN-ELLHYTEKPETFVSDLINCGVY 184
+++A N T+ V+ ++G V + D N + EKP S+ G+Y
Sbjct: 122 LMEAAVNKESGATVFAYHVN--DPERYG--VVEFDKNGTAISLEEKPLEPKSNYAVTGLY 177
Query: 185 VFTPDI 190
+ D+
Sbjct: 178 FYDNDV 183
>pdb|1H5R|B Chain B, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5T|B Chain B, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5S|B Chain B, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 84/186 (45%), Gaps = 14/186 (7%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPIS-----ACKRIYLVGFYEEREF 65
+I+ GG GTR P+++ + K L P+ +PM+++P+S + I ++ ++
Sbjct: 6 GIILAGG--SGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPR 63
Query: 66 ALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPE 125
+ ++ + ++Y + P G A A + I D+ + +L ++ LP+
Sbjct: 64 FQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGDDCA--LVLGDNIFYGHDLPK 121
Query: 126 MLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN-ELLHYTEKPETFVSDLINCGVY 184
+++A N T+ V+ ++G V + D N + EKP S+ G+Y
Sbjct: 122 LMEAAVNKESGATVFAYHVN--DPERYG--VVEFDKNGTAISLEEKPLEPKSNYAVTGLY 177
Query: 185 VFTPDI 190
+ D+
Sbjct: 178 FYDNDV 183
>pdb|1H5T|A Chain A, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5R|A Chain A, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5R|C Chain C, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5R|D Chain D, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5T|C Chain C, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5T|D Chain D, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5S|C Chain C, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 84/186 (45%), Gaps = 14/186 (7%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPIS-----ACKRIYLVGFYEEREF 65
+I+ GG GTR P+++ + K L P+ +PM+++P+S + I ++ ++
Sbjct: 6 GIILAGG--SGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPR 63
Query: 66 ALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPE 125
+ ++ + ++Y + P G A A + I D+ + +L ++ LP+
Sbjct: 64 FQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGDDCA--LVLGDNIFYGHDLPK 121
Query: 126 MLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN-ELLHYTEKPETFVSDLINCGVY 184
+++A N T+ V+ ++G V + D N + EKP S+ G+Y
Sbjct: 122 LMEAAVNKESGATVFAYHVN--DPERYG--VVEFDKNGTAISLEEKPLEPKSNYAVTGLY 177
Query: 185 VFTPDI 190
+ D+
Sbjct: 178 FYDNDV 183
>pdb|1H5S|A Chain A, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 84/186 (45%), Gaps = 14/186 (7%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPIS-----ACKRIYLVGFYEEREF 65
+I+ GG GTR P+++ + K L P+ +PM+++P+S + I ++ ++
Sbjct: 6 GIILAGG--SGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPR 63
Query: 66 ALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPE 125
+ ++ + ++Y + P G A A + I D+ + +L ++ LP+
Sbjct: 64 FQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGDDCA--LVLGDNIFYGHDLPK 121
Query: 126 MLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN-ELLHYTEKPETFVSDLINCGVY 184
+++A N T+ V+ ++G V + D N + EKP S+ G+Y
Sbjct: 122 LMEAAVNKESGATVFAYHVN--DPERYG--VVEFDKNGTAISLEEKPLEPKSNYAVTGLY 177
Query: 185 VFTPDI 190
+ D+
Sbjct: 178 FYDNDV 183
>pdb|2UX8|A Chain A, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|B Chain B, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|C Chain C, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|D Chain D, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|E Chain E, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|F Chain F, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|G Chain G, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|H Chain H, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate
Length = 297
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 87/206 (42%), Gaps = 34/206 (16%)
Query: 21 GTRFRPLSLNIPKPLFPLGGQPMVHHPISAC------KRIYLVG---------FYEEREF 65
GTRF P + +PK + P+ +P++ + + + I++ G F E
Sbjct: 25 GTRFLPATKAMPKEMLPVVDRPLIQYAVDEAVEAGIEQMIFVTGRGKSALEDHFDIAYEL 84
Query: 66 ALYVSSISNELRI---------PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCD 116
+++ L + + Y+R+ +P G A++ RD I+ D P + L + D
Sbjct: 85 EATMAARGKSLDVLDGTRLKPGNIAYVRQQEPMGLGHAVWCARD-IVGDEPFAVLLPD-D 142
Query: 117 VCCSFP--LPEMLDAHRNYGGMGTILVIKVSAESASQFGEL---VADPDTNELLHYTEKP 171
P L +M+DA+ GG I +V + ++G + D E+ EKP
Sbjct: 143 FMFGQPGCLKQMVDAYNKVGG-NLICAEEVPDDQTHRYGIITPGTQDGVLTEVKGLVEKP 201
Query: 172 E--TFVSDLINCGVYVFTPDIFNAIQ 195
T S+L G Y+ P++ ++
Sbjct: 202 APGTAPSNLSVIGRYILQPEVMRILE 227
>pdb|1TZF|A Chain A, X-Ray Crystal Structure Of Alpha-D-Glucose-1-Phosphate
Cytidylyltransferase From Salmonella Typhi
pdb|1WVC|A Chain A, Alpha-D-Glucose-1-Phosphate Cytidylyltransferase Complexed
With Ctp
Length = 259
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/284 (20%), Positives = 107/284 (37%), Gaps = 65/284 (22%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHH-----PISACKRIYLV----GFYE 61
AVI+ GG GTR ++ PKP+ +GG+P++ H + K + G+
Sbjct: 5 AVILAGG--LGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVI 62
Query: 62 EREFALYVSSISN------ELRIPVRYLRED----------KPHGSAGALYNFRDLIMED 105
+ FA Y +S+ E R+ V + R + + G L + + +D
Sbjct: 63 KEYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYV-KD 121
Query: 106 NPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELL 165
+ + +F D + +D H+ +G T+ + +FG L D ++
Sbjct: 122 DEAFLFTYG-DGVADLDIKATIDFHKAHGKKATL----TATFPPGRFGAL--DIQAGQVR 174
Query: 166 HYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTT 225
+ EKP+ +IN G +V P + + I
Sbjct: 175 SFQEKPKG-DGAMINGGFFVLNPSVIDLID-----------------------------N 204
Query: 226 DFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLY 269
D +Q+ L LA + +L +E FW+ + T + GL+
Sbjct: 205 DATTWEQEPLMTLAQQGELMAFEHPGFWQPMDTLRDKVYLEGLW 248
>pdb|1JYL|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae
(Licc)
pdb|1JYL|B Chain B, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae
(Licc)
pdb|1JYL|C Chain C, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae
(Licc)
pdb|1JYL|D Chain D, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae
(Licc)
Length = 254
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYE 61
+V A+I+ G GTR RPL+ N PK L + +P++ + I K I +VG+ +
Sbjct: 25 RVKAIILAAGL--GTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLK 82
Query: 62 ER 63
E+
Sbjct: 83 EQ 84
>pdb|1JYK|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae
(Licc)
Length = 254
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYE 61
+V A+I+ G GTR RPL+ N PK L + +P++ + I K I +VG+ +
Sbjct: 25 RVKAIILAAGL--GTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLK 82
Query: 62 ER 63
E+
Sbjct: 83 EQ 84
>pdb|1MP3|A Chain A, L89t Variant Of S. Enterica Rmla
pdb|1MP3|B Chain B, L89t Variant Of S. Enterica Rmla
Length = 292
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/181 (19%), Positives = 81/181 (44%), Gaps = 12/181 (6%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPIS-----ACKRIYLVGFYEEREF 65
+I+ GG GTR P+++ + + L P+ +PM+++P+S + I ++ ++
Sbjct: 6 GIILAGG--SGTRLYPVTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPR 63
Query: 66 ALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPE 125
+ ++ + ++Y + P G+A A + I D+ + +L ++ LP+
Sbjct: 64 FQQLLGDGSQWGLNLQYKVQPSPDGTAQAFIIGEEFIGHDDCA--LVLGDNIFYGHDLPK 121
Query: 126 MLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVYV 185
+++A N T+ V+ ++G + D + EKP S+ G+Y
Sbjct: 122 LMEAAVNKESGATVFAYHVN--DPERYGVVEFD-QAGTAVSLEEKPLQPKSNYAVTGLYF 178
Query: 186 F 186
+
Sbjct: 179 Y 179
>pdb|3PKQ|A Chain A, Q83d Variant Of S. Enterica Rmla With Dgtp
pdb|3PKQ|B Chain B, Q83d Variant Of S. Enterica Rmla With Dgtp
pdb|3PKQ|C Chain C, Q83d Variant Of S. Enterica Rmla With Dgtp
pdb|3PKQ|D Chain D, Q83d Variant Of S. Enterica Rmla With Dgtp
Length = 292
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/181 (20%), Positives = 80/181 (44%), Gaps = 12/181 (6%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPIS-----ACKRIYLVGFYEEREF 65
+I+ GG GTR P+++ + K L P+ +PM+++P+S + I ++ ++
Sbjct: 6 GIILAGG--SGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPR 63
Query: 66 ALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPE 125
+ ++ + ++Y + P G A A + I D+ + +L ++ LP+
Sbjct: 64 FQQLLGDGSQWGLNLQYKVDPSPDGLAQAFIIGEEFIGHDDCA--LVLGDNIFYGHDLPK 121
Query: 126 MLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVYV 185
+++A N T+ V+ ++G + D + EKP S+ G+Y
Sbjct: 122 LMEAAVNKESGATVFAYHVN--DPERYGVVEFD-QKGTAVSLEEKPLQPKSNYAVTGLYF 178
Query: 186 F 186
+
Sbjct: 179 Y 179
>pdb|3PKP|A Chain A, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|B Chain B, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|C Chain C, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|D Chain D, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|I Chain I, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|J Chain J, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|K Chain K, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|L Chain L, Q83s Variant Of S. Enterica Rmla With Datp
Length = 292
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/181 (20%), Positives = 79/181 (43%), Gaps = 12/181 (6%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPIS-----ACKRIYLVGFYEEREF 65
+I+ GG GTR P+++ + K L P+ +PM+++P+S + I ++ ++
Sbjct: 6 GIILAGG--SGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPR 63
Query: 66 ALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPE 125
+ ++ + ++Y P G A A + I D+ + +L ++ LP+
Sbjct: 64 FQQLLGDGSQWGLNLQYKVSPSPDGLAQAFIIGEEFIGHDDCA--LVLGDNIFYGHDLPK 121
Query: 126 MLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVYV 185
+++A N T+ V+ ++G + D + EKP S+ G+Y
Sbjct: 122 LMEAAVNKESGATVFAYHVN--DPERYGVVEFD-QKGTAVSLEEKPLQPKSNYAVTGLYF 178
Query: 186 F 186
+
Sbjct: 179 Y 179
>pdb|1LVW|A Chain A, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|B Chain B, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|C Chain C, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|D Chain D, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
Length = 295
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 79/194 (40%), Gaps = 38/194 (19%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRIYLVGFYE------ERE 64
+++ GG GTR P++ + K L P+ +PM+++P+S + L G + R+
Sbjct: 6 GIVLAGG--SGTRLYPITRAVSKQLLPIYDKPMIYYPLSV---LMLAGIRDILIISTPRD 60
Query: 65 FALYVSSISNELRIPVR--YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP 122
LY + + + VR Y +++P G A A +D I S + L+ D
Sbjct: 61 LPLYRDLLGDGSQFGVRFSYRVQEEPRGIADAFIVGKDFI---GDSKVALVLGD------ 111
Query: 123 LPEMLDAHRNYGGMGTILVIKVSAE-SASQFGELVADP---------DTNELLHYTEKPE 172
+ HR IL S E A FG V DP ++ EKP
Sbjct: 112 --NVFYGHR----FSEILRRAASLEDGAVIFGYYVRDPRPFGVVEFDSEGRVISIEEKPS 165
Query: 173 TFVSDLINCGVYVF 186
S+ + G+Y +
Sbjct: 166 RPKSNYVVPGLYFY 179
>pdb|1YP2|A Chain A, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP2|B Chain B, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP2|C Chain C, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP2|D Chain D, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP3|A Chain A, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP3|B Chain B, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP3|C Chain C, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP3|D Chain D, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP4|A Chain A, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
pdb|1YP4|B Chain B, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
pdb|1YP4|C Chain C, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
pdb|1YP4|D Chain D, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
Length = 451
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 68/170 (40%), Gaps = 20/170 (11%)
Query: 22 TRFRPLSLNIPKPLFPLGGQ-PMVHHPISAC-----KRIYLVGFYE--------EREFAL 67
TR PL+ KP PLG ++ P+S C +IY++ + R +A
Sbjct: 32 TRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYAS 91
Query: 68 YVSSISNELRIPVRYLRE-----DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP 122
+ NE + V ++ D G+A A+ + L E +L D
Sbjct: 92 NMGGYKNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMD 151
Query: 123 LPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPE 172
+ + AHR T+ + + + A+ FG + D + ++ + EKP+
Sbjct: 152 YEKFIQAHRETDADITVAALPMDEKRATAFGLMKID-EEGRIIEFAEKPQ 200
>pdb|1IIM|A Chain A, Thymidylyltransferase Complexed With Ttp
pdb|1IIM|B Chain B, Thymidylyltransferase Complexed With Ttp
pdb|1IIN|A Chain A, Thymidylyltransferase Complexed With Udp-Glucose
pdb|1IIN|B Chain B, Thymidylyltransferase Complexed With Udp-Glucose
pdb|1IIN|C Chain C, Thymidylyltransferase Complexed With Udp-Glucose
pdb|1IIN|D Chain D, Thymidylyltransferase Complexed With Udp-Glucose
Length = 292
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/181 (19%), Positives = 80/181 (44%), Gaps = 12/181 (6%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPIS-----ACKRIYLVGFYEEREF 65
+I+ GG GTR P+++ + + L P+ +PM+++P+S + I ++ ++
Sbjct: 6 GIILAGG--SGTRLYPVTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPR 63
Query: 66 ALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPE 125
+ ++ + ++Y + P G A A + I D+ + +L ++ LP+
Sbjct: 64 FQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGHDDCA--LVLGDNIFYGHDLPK 121
Query: 126 MLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVYV 185
+++A N T+ V+ ++G + D + EKP S+ G+Y
Sbjct: 122 LMEAAVNKESGATVFAYHVN--DPERYGVVEFD-QKGTAVSLEEKPLQPKSNYAVTGLYF 178
Query: 186 F 186
+
Sbjct: 179 Y 179
>pdb|1MP4|A Chain A, W224h Variant Of S. Enterica Rmla
pdb|1MP4|B Chain B, W224h Variant Of S. Enterica Rmla
Length = 292
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/181 (19%), Positives = 80/181 (44%), Gaps = 12/181 (6%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPIS-----ACKRIYLVGFYEEREF 65
+I+ GG GTR P+++ + + L P+ +PM+++P+S + I ++ ++
Sbjct: 6 GIILAGG--SGTRLYPVTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPR 63
Query: 66 ALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPE 125
+ ++ + ++Y + P G A A + I D+ + +L ++ LP+
Sbjct: 64 FQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGHDDCA--LVLGDNIFYGHDLPK 121
Query: 126 MLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVYV 185
+++A N T+ V+ ++G + D + EKP S+ G+Y
Sbjct: 122 LMEAAVNKESGATVFAYHVN--DPERYGVVEFD-QAGTAVSLEEKPLQPKSNYAVTGLYF 178
Query: 186 F 186
+
Sbjct: 179 Y 179
>pdb|1MP5|A Chain A, Y177f Variant Of S. Enterica Rmla
pdb|1MP5|B Chain B, Y177f Variant Of S. Enterica Rmla
pdb|1MP5|C Chain C, Y177f Variant Of S. Enterica Rmla
pdb|1MP5|D Chain D, Y177f Variant Of S. Enterica Rmla
Length = 292
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/140 (20%), Positives = 65/140 (46%), Gaps = 9/140 (6%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPIS-----ACKRIYLVGFYEEREF 65
+I+ GG GTR P+++ + + L P+ +PM+++P+S + I ++ ++
Sbjct: 6 GIILAGG--SGTRLYPVTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPR 63
Query: 66 ALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPE 125
+ ++ + ++Y + P G A A + I D+ + +L ++ LP+
Sbjct: 64 FQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGHDDCA--LVLGDNIFYGHDLPK 121
Query: 126 MLDAHRNYGGMGTILVIKVS 145
+++A N T+ V+
Sbjct: 122 LMEAAVNKESGATVFAYHVN 141
>pdb|4ARW|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ARW|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ARW|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ARW|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
Length = 302
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPIS 49
K +I+ GG GTR P +L I K L P+ +PM+++P+S
Sbjct: 11 KRKGIILAGG--SGTRLHPATLAISKQLLPVYDKPMIYYPLS 50
>pdb|4B2X|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B2X|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B2X|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B2X|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
Length = 303
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPIS 49
K +I+ GG GTR P +L I K L P+ +PM+++P+S
Sbjct: 12 KRKGIILAGG--SGTRLHPATLAISKQLLPVYDKPMIYYPLS 51
>pdb|1FXO|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FZW|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1G0R|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G1L|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G2V|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G3L|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|1G3L|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|1G3L|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|1G3L|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|4ASJ|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASJ|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASJ|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASJ|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
Length = 293
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPIS 49
K +I+ GG GTR P +L I K L P+ +PM+++P+S
Sbjct: 2 KRKGIILAGG--SGTRLHPATLAISKQLLPVYDKPMIYYPLS 41
>pdb|3FWW|A Chain A, The Crystal Structure Of The Bifunctional
N-Acetylglucosamine-1- Phosphate
UridyltransferaseGLUCOSAMINE-1-Phosphate
Acetyltransferase From Yersinia Pestis Co92
Length = 456
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 12 VIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRI 54
VI+ G KGTR ++PK L PL G+PMV H I A ++
Sbjct: 9 VILAAG--KGTRMYS---DLPKVLHPLAGKPMVQHVIDAAMKL 46
>pdb|4FCE|A Chain A, Crystal Structure Of Yersinia Pestis Glmu In Comlex With
Alpha-D- Glucosamine 1-Phosphate (Gp1)
Length = 459
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 12 VIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRI 54
VI+ G KGTR ++PK L PL G+PMV H I A ++
Sbjct: 12 VILAAG--KGTRMYS---DLPKVLHPLAGKPMVQHVIDAAMKL 49
>pdb|1G23|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex
Length = 293
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPIS 49
K +I+ GG GTR P +L I K L P+ +P +++P+S
Sbjct: 2 KRKGIILAGG--SGTRLHPATLAISKQLLPVYDKPXIYYPLS 41
>pdb|3BRK|X Chain X, Crystal Structure Of Adp-Glucose Pyrophosphorylase From
Agrobacterium Tumefaciens
Length = 420
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 79/202 (39%), Gaps = 31/202 (15%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMV------HHPISACKRIYLVGFYEERE 64
A ++ GG +G+R + L+ KP GG+ + + S +RI + Y+
Sbjct: 15 AYVLAGG--RGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVATQYKAHS 72
Query: 65 FALYVSSISNELR---------IPV--RYLREDKPHGSAGALYNFRDLIMEDNPSHIFLL 113
++ + R +P R G+A A+Y D+I P + +L
Sbjct: 73 LIRHLQRGWDFFRPERNESFDILPASQRVSETQWYEGTADAVYQNIDIIEPYAPEYXVIL 132
Query: 114 NCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKP-- 171
D L H + G TI ++V A+ FG + + +E++ + EKP
Sbjct: 133 AGDHIYKXDYEYXLQQHVDSGADVTIGCLEVPRXEATGFGVXHVN-EKDEIIDFIEKPAD 191
Query: 172 -------ETFVSDLINCGVYVF 186
E F L + G+YVF
Sbjct: 192 PPGIPGNEGFA--LASXGIYVF 211
>pdb|2E3D|A Chain A, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
pdb|2E3D|B Chain B, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
pdb|2E3D|C Chain C, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
pdb|2E3D|D Chain D, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
Length = 302
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISAC 51
AVI V G GTR P + IPK + PL +P++ + ++ C
Sbjct: 11 AVIPVAG--LGTRMLPATKAIPKEMLPLVDKPLIQYVVNEC 49
>pdb|3F1C|A Chain A, Crystal Structure Of 2-C-Methyl-D-Erythritol 4-Phosphate
Cytidylyltransferase From Listeria Monocytogenes
pdb|3F1C|B Chain B, Crystal Structure Of 2-C-Methyl-D-Erythritol 4-Phosphate
Cytidylyltransferase From Listeria Monocytogenes
Length = 246
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPIS 49
+ A I+ GG KGTR +S+ PK PL G+P++ H +
Sbjct: 4 IYAQILAGG--KGTRMGNVSM--PKQFLPLNGKPIIVHTVE 40
>pdb|4DJ2|A Chain A, Unwinding The Differences Of The Mammalian Period Clock
Proteins From Crystal Structure To Cellular Function
pdb|4DJ2|B Chain B, Unwinding The Differences Of The Mammalian Period Clock
Proteins From Crystal Structure To Cellular Function
pdb|4DJ2|C Chain C, Unwinding The Differences Of The Mammalian Period Clock
Proteins From Crystal Structure To Cellular Function
pdb|4DJ2|D Chain D, Unwinding The Differences Of The Mammalian Period Clock
Proteins From Crystal Structure To Cellular Function
Length = 320
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 25 RPLSLNIPKPLFPLGGQPMVHHPISACKR 53
RPL L I K + L GQP H PI C R
Sbjct: 220 RPLMLAIHKKILQLAGQPFDHSPIRFCAR 248
>pdb|2V0H|A Chain A, Characterization Of Substrate Binding And Catalysis Of
The Potential Antibacterial Target
N-Acetylglucosamine-1- Phosphate Uridyltransferase
(Glmu)
pdb|2V0I|A Chain A, Characterization Of Substrate Binding And Catalysis Of
The Potential Antibacterial Target
N-Acetylglucosamine-1- Phosphate Uridyltransferase
(Glmu)
pdb|2V0J|A Chain A, Characterization Of Substrate Binding And Catalysis Of
The Potential Antibacterial Target
N-acetylglucosamine-1- Phosphate Uridyltransferase
(glmu)
pdb|2V0K|A Chain A, Characterization Of Substrate Binding And Catalysis Of
The Potential Antibacterial Target
N-Acetylglucosamine-1- Phosphate Uridyltransferase
(Glmu)
pdb|2V0L|A Chain A, Characterization Of Substrate Binding And Catalysis Of
The Potential Antibacterial Target
N-Acetylglucosamine-1- Phosphate Uridyltransferase
(Glmu)
pdb|2VD4|A Chain A, Structure Of Small-Molecule Inhibitor Of Glmu From
Haemophilus Influenzae Reveals An Allosteric Binding
Site
pdb|2W0V|A Chain A, Crystal Structure Of Glmu From Haemophilus Influenzae In
Complex With Quinazoline Inhibitor 1
pdb|2W0W|A Chain A, Crystal Structure Of Glmu From Haemophilus Influenzae In
Complex With Quinazoline Inhibitor 2
Length = 456
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRI 54
AVI+ G KGTR ++PK L + G+PMV H I ++
Sbjct: 8 AVILAAG--KGTRMYS---DLPKVLHTIAGKPMVKHVIDTAHQL 46
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,036,101
Number of Sequences: 62578
Number of extensions: 457656
Number of successful extensions: 953
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 923
Number of HSP's gapped (non-prelim): 34
length of query: 379
length of database: 14,973,337
effective HSP length: 100
effective length of query: 279
effective length of database: 8,715,537
effective search space: 2431634823
effective search space used: 2431634823
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)