Query 016989
Match_columns 379
No_of_seqs 193 out of 2657
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 04:38:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016989.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016989hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1460 GDP-mannose pyrophosph 100.0 2.8E-56 6.1E-61 386.4 24.1 366 8-379 2-407 (407)
2 KOG1322 GDP-mannose pyrophosph 100.0 8.2E-54 1.8E-58 377.1 24.8 325 7-373 8-347 (371)
3 COG1208 GCD1 Nucleoside-diphos 100.0 2E-50 4.3E-55 380.8 30.3 313 8-371 1-324 (358)
4 COG0448 GlgC ADP-glucose pyrop 100.0 4.7E-50 1E-54 366.5 25.5 331 5-374 2-359 (393)
5 PRK00844 glgC glucose-1-phosph 100.0 2.2E-48 4.7E-53 375.7 29.9 328 5-374 2-379 (407)
6 PRK05293 glgC glucose-1-phosph 100.0 3.5E-48 7.5E-53 372.3 28.7 331 6-374 1-356 (380)
7 TIGR01208 rmlA_long glucose-1- 100.0 7.2E-46 1.6E-50 352.6 30.1 321 10-374 1-336 (353)
8 PRK00725 glgC glucose-1-phosph 100.0 2.6E-46 5.7E-51 362.4 27.4 328 5-374 12-391 (425)
9 TIGR02092 glgD glucose-1-phosp 100.0 1.6E-45 3.5E-50 352.3 26.9 327 8-374 2-352 (369)
10 PRK02862 glgC glucose-1-phosph 100.0 3.2E-45 6.9E-50 355.3 28.7 322 7-374 2-391 (429)
11 PLN02241 glucose-1-phosphate a 100.0 1.7E-44 3.6E-49 351.2 29.6 323 6-374 1-398 (436)
12 TIGR02091 glgC glucose-1-phosp 100.0 2.6E-44 5.7E-49 343.2 28.2 326 11-374 1-358 (361)
13 COG1209 RfbA dTDP-glucose pyro 100.0 4.6E-42 9.9E-47 297.7 17.8 230 9-271 1-237 (286)
14 COG1207 GlmU N-acetylglucosami 100.0 9.6E-40 2.1E-44 298.4 27.0 229 8-272 2-245 (460)
15 PRK14355 glmU bifunctional N-a 100.0 5.8E-39 1.3E-43 315.4 27.7 318 7-374 2-352 (459)
16 PRK14358 glmU bifunctional N-a 100.0 1.7E-37 3.7E-42 305.5 28.3 320 7-374 6-354 (481)
17 PRK14352 glmU bifunctional N-a 100.0 2.4E-37 5.2E-42 305.5 29.1 324 7-372 3-352 (482)
18 KOG1462 Translation initiation 100.0 3.3E-38 7.1E-43 283.6 19.1 352 6-370 7-412 (433)
19 PRK14356 glmU bifunctional N-a 100.0 2.5E-37 5.4E-42 304.1 26.1 319 5-373 2-352 (456)
20 cd06428 M1P_guanylylT_A_like_N 100.0 3.2E-37 7E-42 280.6 21.9 250 11-268 1-256 (257)
21 PRK14353 glmU bifunctional N-a 100.0 2.2E-36 4.7E-41 296.6 28.6 314 7-367 4-345 (446)
22 PRK14359 glmU bifunctional N-a 100.0 1.9E-36 4E-41 295.8 27.0 324 8-373 2-355 (430)
23 TIGR01105 galF UTP-glucose-1-p 100.0 5.4E-37 1.2E-41 282.1 20.8 232 7-269 2-276 (297)
24 PRK09451 glmU bifunctional N-a 100.0 1.2E-36 2.6E-41 298.9 24.5 325 7-373 4-382 (456)
25 PRK15480 glucose-1-phosphate t 100.0 8E-37 1.7E-41 280.3 21.3 231 7-270 2-241 (292)
26 cd06425 M1P_guanylylT_B_like_N 100.0 1.3E-36 2.8E-41 272.7 21.3 228 9-270 1-233 (233)
27 KOG1461 Translation initiation 100.0 2E-35 4.2E-40 280.5 28.5 322 6-374 22-398 (673)
28 TIGR01173 glmU UDP-N-acetylglu 100.0 7.4E-36 1.6E-40 293.4 25.6 310 9-373 1-344 (451)
29 PF00483 NTP_transferase: Nucl 100.0 2.1E-36 4.5E-41 274.0 18.5 234 10-270 1-246 (248)
30 PRK10122 GalU regulator GalF; 100.0 1.1E-35 2.5E-40 274.0 21.1 232 7-269 2-276 (297)
31 TIGR01207 rmlA glucose-1-phosp 100.0 7.9E-36 1.7E-40 273.4 19.3 228 10-270 1-237 (286)
32 cd02538 G1P_TT_short G1P_TT_sh 100.0 2.6E-35 5.7E-40 265.4 19.7 228 9-269 1-237 (240)
33 PRK14354 glmU bifunctional N-a 100.0 1.3E-34 2.7E-39 285.1 26.2 226 8-272 2-242 (458)
34 PRK14357 glmU bifunctional N-a 100.0 2.4E-34 5.3E-39 282.3 25.4 313 9-373 1-337 (448)
35 PRK14360 glmU bifunctional N-a 100.0 8.2E-33 1.8E-37 271.7 27.6 223 9-271 2-238 (450)
36 TIGR02623 G1P_cyt_trans glucos 100.0 1.9E-33 4E-38 254.9 20.4 221 10-271 1-246 (254)
37 PRK13389 UTP--glucose-1-phosph 100.0 3.7E-33 8.1E-38 257.7 20.8 230 7-269 7-279 (302)
38 TIGR01099 galU UTP-glucose-1-p 100.0 2.3E-33 4.9E-38 255.9 18.8 227 9-265 1-260 (260)
39 cd02541 UGPase_prokaryotic Pro 100.0 3.1E-33 6.7E-38 255.9 19.4 231 9-269 1-264 (267)
40 cd04189 G1P_TT_long G1P_TT_lon 100.0 6.6E-33 1.4E-37 249.2 20.9 229 9-271 1-235 (236)
41 cd06422 NTP_transferase_like_1 100.0 2.6E-32 5.6E-37 242.9 19.0 213 10-265 1-221 (221)
42 cd06915 NTP_transferase_WcbM_l 100.0 2.6E-31 5.7E-36 236.5 19.8 217 11-265 1-222 (223)
43 cd02524 G1P_cytidylyltransfera 100.0 3.7E-31 8E-36 240.1 20.2 221 11-270 1-246 (253)
44 cd04181 NTP_transferase NTP_tr 100.0 6.5E-31 1.4E-35 233.1 20.3 212 11-257 1-217 (217)
45 cd06426 NTP_transferase_like_2 100.0 1.6E-30 3.4E-35 231.2 19.8 214 11-266 1-220 (220)
46 COG1210 GalU UDP-glucose pyrop 100.0 3.5E-30 7.6E-35 223.8 15.7 235 5-269 1-269 (291)
47 cd04197 eIF-2B_epsilon_N The N 100.0 4.6E-28 9.9E-33 214.8 17.2 176 9-191 1-217 (217)
48 cd02523 PC_cytidylyltransferas 100.0 1E-27 2.2E-32 214.5 15.2 221 11-266 1-229 (229)
49 cd04183 GT2_BcE_like GT2_BcbE_ 99.9 1.1E-26 2.4E-31 208.1 18.1 218 11-262 1-230 (231)
50 cd02508 ADP_Glucose_PP ADP-glu 99.9 5.9E-27 1.3E-31 205.1 15.2 182 11-256 1-200 (200)
51 cd02509 GDP-M1P_Guanylyltransf 99.9 5.5E-25 1.2E-29 201.3 19.1 235 9-261 1-273 (274)
52 cd02507 eIF-2B_gamma_N_like Th 99.9 1.1E-24 2.3E-29 192.9 16.3 177 9-191 1-216 (216)
53 cd02540 GT2_GlmU_N_bac N-termi 99.9 2.3E-24 5E-29 192.7 18.0 213 11-261 1-228 (229)
54 cd04198 eIF-2B_gamma_N The N-t 99.9 1.2E-24 2.6E-29 192.4 15.8 177 9-191 1-214 (214)
55 PRK05450 3-deoxy-manno-octulos 99.9 1.8E-23 4E-28 188.9 19.7 221 8-269 2-244 (245)
56 TIGR01479 GMP_PMI mannose-1-ph 99.9 8.9E-23 1.9E-27 199.6 18.5 240 9-265 1-280 (468)
57 cd02517 CMP-KDO-Synthetase CMP 99.9 2.6E-22 5.7E-27 180.7 18.1 217 9-267 2-238 (239)
58 COG1213 Predicted sugar nucleo 99.9 1.7E-22 3.6E-27 173.0 13.7 224 7-274 2-233 (239)
59 PRK13368 3-deoxy-manno-octulos 99.9 3.7E-21 8E-26 173.1 18.2 215 8-267 2-236 (238)
60 PLN02917 CMP-KDO synthetase 99.8 1.1E-19 2.3E-24 167.1 19.7 223 7-270 46-288 (293)
61 COG0836 {ManC} Mannose-1-phosp 99.8 6.3E-19 1.4E-23 157.3 17.6 241 9-265 2-281 (333)
62 PRK15460 cpsB mannose-1-phosph 99.8 9.1E-19 2E-23 169.8 18.1 243 7-265 4-289 (478)
63 COG4750 LicC CTP:phosphocholin 99.7 2E-17 4.4E-22 135.9 10.9 165 9-196 1-170 (231)
64 TIGR00466 kdsB 3-deoxy-D-manno 99.7 2.1E-15 4.6E-20 135.2 18.6 212 11-262 2-237 (238)
65 cd02513 CMP-NeuAc_Synthase CMP 99.6 1.9E-14 4.1E-19 128.0 16.2 200 9-267 2-221 (223)
66 PRK00155 ispD 2-C-methyl-D-ery 99.6 8.8E-14 1.9E-18 124.1 14.7 212 7-270 2-223 (227)
67 TIGR03584 PseF pseudaminic aci 99.6 1.6E-13 3.5E-18 121.6 15.9 198 11-268 2-219 (222)
68 PF12804 NTP_transf_3: MobA-li 99.5 4.5E-14 9.7E-19 118.9 10.8 116 11-142 1-123 (160)
69 cd02516 CDP-ME_synthetase CDP- 99.5 1.3E-13 2.8E-18 122.2 13.6 207 10-264 2-217 (218)
70 PRK09382 ispDF bifunctional 2- 99.5 2.3E-13 5E-18 129.0 16.0 202 6-270 3-213 (378)
71 TIGR00453 ispD 2-C-methyl-D-er 99.5 1.3E-13 2.9E-18 122.1 13.4 205 10-267 1-215 (217)
72 COG1212 KdsB CMP-2-keto-3-deox 99.5 4.1E-13 8.9E-18 114.0 15.4 224 7-270 2-243 (247)
73 TIGR00454 conserved hypothetic 99.5 7.4E-14 1.6E-18 119.8 10.9 119 9-142 1-126 (183)
74 TIGR03310 matur_ygfJ molybdenu 99.5 2.2E-13 4.8E-18 117.8 12.5 114 11-137 2-122 (188)
75 PRK13385 2-C-methyl-D-erythrit 99.5 3.9E-13 8.5E-18 120.1 13.7 213 8-269 2-223 (230)
76 cd04182 GT_2_like_f GT_2_like_ 99.5 5.8E-13 1.3E-17 114.8 11.4 114 9-135 1-121 (186)
77 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.4 7.1E-13 1.5E-17 117.6 8.8 135 232-373 31-191 (231)
78 TIGR03202 pucB xanthine dehydr 99.4 3.4E-12 7.5E-17 110.6 11.4 114 10-132 2-123 (190)
79 PRK00560 molybdopterin-guanine 99.4 5.7E-12 1.2E-16 109.6 12.6 105 1-126 1-112 (196)
80 COG2266 GTP:adenosylcobinamide 99.4 4.3E-12 9.3E-17 104.2 10.5 105 9-131 1-112 (177)
81 cd02503 MobA MobA catalyzes th 99.3 4.1E-12 8.9E-17 109.2 9.7 103 9-130 1-109 (181)
82 PRK02726 molybdopterin-guanine 99.3 1.5E-11 3.2E-16 107.4 11.8 109 5-131 4-119 (200)
83 TIGR02665 molyb_mobA molybdopt 99.3 1.7E-11 3.8E-16 105.8 11.6 109 9-132 1-115 (186)
84 PRK00317 mobA molybdopterin-gu 99.3 1.5E-11 3.3E-16 106.9 10.8 108 7-131 2-115 (193)
85 PF01128 IspD: 2-C-methyl-D-er 99.3 3.3E-10 7.1E-15 99.6 17.6 208 9-269 1-219 (221)
86 COG0746 MobA Molybdopterin-gua 99.3 2.6E-11 5.6E-16 104.3 10.3 109 6-134 2-116 (192)
87 PLN02728 2-C-methyl-D-erythrit 99.3 4.9E-11 1.1E-15 107.3 11.9 129 2-144 17-155 (252)
88 cd04652 LbH_eIF2B_gamma_C eIF- 99.2 6.9E-11 1.5E-15 87.4 9.3 71 288-373 10-80 (81)
89 cd05824 LbH_M1P_guanylylT_C Ma 99.2 1.2E-10 2.6E-15 85.9 9.5 74 288-371 4-80 (80)
90 COG1083 NeuA CMP-N-acetylneura 99.2 2.8E-10 6.2E-15 96.2 11.9 202 7-270 2-223 (228)
91 COG1211 IspD 4-diphosphocytidy 99.2 1.8E-10 3.8E-15 100.8 10.9 127 6-144 2-137 (230)
92 PRK14489 putative bifunctional 99.2 2E-10 4.2E-15 109.5 10.6 115 8-137 5-125 (366)
93 COG2068 Uncharacterized MobA-r 99.1 3.4E-10 7.5E-15 95.7 10.4 115 6-133 3-125 (199)
94 cd03356 LbH_G1P_AT_C_like Left 99.1 3E-10 6.5E-15 83.5 9.0 68 289-371 11-79 (79)
95 COG0663 PaaY Carbonic anhydras 99.1 2.2E-10 4.7E-15 94.9 8.2 90 276-370 10-99 (176)
96 cd04651 LbH_G1P_AT_C Glucose-1 99.1 5.4E-10 1.2E-14 86.7 8.4 71 288-374 6-76 (104)
97 TIGR02287 PaaY phenylacetic ac 99.1 4.3E-10 9.4E-15 96.8 8.4 92 277-373 8-99 (192)
98 cd03356 LbH_G1P_AT_C_like Left 99.0 8E-10 1.7E-14 81.2 7.8 63 298-374 2-64 (79)
99 cd05636 LbH_G1P_TT_C_like Puta 99.0 1.5E-09 3.2E-14 91.6 10.0 73 288-374 28-101 (163)
100 PRK13627 carnitine operon prot 99.0 1.4E-09 3E-14 94.0 9.2 80 285-373 18-101 (196)
101 COG1044 LpxD UDP-3-O-[3-hydrox 99.0 1.2E-09 2.5E-14 99.3 8.6 80 280-372 102-183 (338)
102 cd04652 LbH_eIF2B_gamma_C eIF- 99.0 1.7E-09 3.7E-14 79.9 7.9 63 298-374 2-64 (81)
103 KOG1462 Translation initiation 99.0 8.5E-10 1.8E-14 100.8 6.8 70 296-374 329-399 (433)
104 cd05787 LbH_eIF2B_epsilon eIF- 99.0 3.3E-09 7.1E-14 77.9 8.8 52 310-371 27-79 (79)
105 PRK14490 putative bifunctional 99.0 3.3E-09 7.1E-14 101.4 10.9 106 6-129 172-283 (369)
106 PLN02296 carbonate dehydratase 99.0 2.5E-09 5.5E-14 96.6 9.3 96 278-373 53-149 (269)
107 cd05787 LbH_eIF2B_epsilon eIF- 99.0 2.5E-09 5.4E-14 78.5 7.6 63 298-374 2-64 (79)
108 TIGR00965 dapD 2,3,4,5-tetrahy 99.0 3.4E-09 7.4E-14 94.4 9.4 87 288-374 105-205 (269)
109 PLN02472 uncharacterized prote 99.0 4.6E-09 9.9E-14 93.7 10.2 96 278-373 60-156 (246)
110 cd05824 LbH_M1P_guanylylT_C Ma 98.9 4.4E-09 9.6E-14 77.5 8.3 49 316-374 17-65 (80)
111 cd04193 UDPGlcNAc_PPase UDPGlc 98.9 3.4E-08 7.5E-13 91.9 15.9 181 7-194 14-254 (323)
112 cd04745 LbH_paaY_like paaY-lik 98.9 6.4E-09 1.4E-13 86.9 10.0 82 287-372 10-108 (155)
113 cd02518 GT2_SpsF SpsF is a gly 98.9 1.1E-08 2.3E-13 91.7 11.6 109 11-137 2-120 (233)
114 cd05635 LbH_unknown Uncharacte 98.9 1.1E-08 2.3E-13 78.8 9.4 33 342-374 61-93 (101)
115 cd03358 LbH_WxcM_N_like WcxM-l 98.9 1.4E-08 3E-13 80.9 10.4 83 288-374 9-99 (119)
116 cd04180 UGPase_euk_like Eukary 98.9 3.1E-10 6.7E-15 103.0 0.8 59 10-73 2-76 (266)
117 PRK11830 dapD 2,3,4,5-tetrahyd 98.9 1.1E-08 2.5E-13 92.0 10.5 65 310-374 137-208 (272)
118 PRK14500 putative bifunctional 98.9 1.3E-08 2.8E-13 95.6 11.1 106 7-130 159-270 (346)
119 cd05636 LbH_G1P_TT_C_like Puta 98.9 1.6E-08 3.4E-13 85.3 9.8 72 289-374 47-143 (163)
120 cd04650 LbH_FBP Ferripyochelin 98.9 1.7E-08 3.6E-13 84.2 9.8 83 286-372 9-108 (154)
121 cd03350 LbH_THP_succinylT 2,3, 98.8 2.7E-08 5.9E-13 81.5 10.1 61 312-373 44-106 (139)
122 TIGR01853 lipid_A_lpxD UDP-3-O 98.8 1.5E-08 3.2E-13 94.7 9.5 15 344-358 196-210 (324)
123 PRK00892 lpxD UDP-3-O-[3-hydro 98.8 3.7E-08 7.9E-13 93.3 12.3 31 343-373 203-238 (343)
124 KOG1461 Translation initiation 98.8 7E-09 1.5E-13 100.4 7.1 67 294-374 349-416 (673)
125 cd04646 LbH_Dynactin_6 Dynacti 98.8 3E-08 6.6E-13 83.5 9.8 83 287-373 9-114 (164)
126 cd00710 LbH_gamma_CA Gamma car 98.8 3.6E-08 7.7E-13 83.5 10.3 30 344-373 83-112 (167)
127 cd03351 LbH_UDP-GlcNAc_AT UDP- 98.8 2.3E-08 5E-13 90.6 9.5 30 344-373 103-133 (254)
128 COG1207 GlmU N-acetylglucosami 98.8 5.5E-09 1.2E-13 97.2 5.3 86 287-372 278-384 (460)
129 cd03353 LbH_GlmU_C N-acetyl-gl 98.8 2.8E-08 6.1E-13 86.3 9.2 21 288-308 26-46 (193)
130 cd04649 LbH_THP_succinylT_puta 98.8 5.7E-08 1.2E-12 78.4 10.2 56 316-373 47-102 (147)
131 PRK05289 UDP-N-acetylglucosami 98.8 2.7E-08 5.8E-13 90.4 9.2 49 311-359 44-96 (262)
132 cd03353 LbH_GlmU_C N-acetyl-gl 98.8 3E-08 6.6E-13 86.1 9.2 76 288-373 20-98 (193)
133 PRK05289 UDP-N-acetylglucosami 98.8 2.1E-08 4.6E-13 91.1 8.5 76 286-374 5-94 (262)
134 cd03351 LbH_UDP-GlcNAc_AT UDP- 98.8 2.1E-08 4.6E-13 90.9 8.2 65 310-374 40-116 (254)
135 TIGR01853 lipid_A_lpxD UDP-3-O 98.8 2.5E-08 5.4E-13 93.2 8.5 31 344-374 158-209 (324)
136 PLN02472 uncharacterized prote 98.8 4.6E-08 1E-12 87.3 9.8 48 316-373 126-174 (246)
137 cd03360 LbH_AT_putative Putati 98.8 4.7E-08 1E-12 84.6 9.5 76 289-373 102-181 (197)
138 TIGR03570 NeuD_NnaD sugar O-ac 98.8 5E-08 1.1E-12 85.0 9.7 49 316-373 135-184 (201)
139 cd04645 LbH_gamma_CA_like Gamm 98.7 3.3E-08 7.2E-13 82.4 7.9 87 287-373 9-108 (153)
140 COG2171 DapD Tetrahydrodipicol 98.7 4.7E-08 1E-12 85.9 8.2 87 287-373 112-213 (271)
141 PTZ00339 UDP-N-acetylglucosami 98.7 8.3E-07 1.8E-11 86.5 17.4 180 7-194 105-349 (482)
142 TIGR01852 lipid_A_lpxA acyl-[a 98.7 6.1E-08 1.3E-12 87.8 8.8 65 310-374 39-115 (254)
143 TIGR03532 DapD_Ac 2,3,4,5-tetr 98.7 9.1E-08 2E-12 85.0 9.6 78 288-374 109-198 (231)
144 PRK14355 glmU bifunctional N-a 98.7 6.1E-08 1.3E-12 95.7 9.4 47 288-334 279-338 (459)
145 cd03360 LbH_AT_putative Putati 98.7 7.9E-08 1.7E-12 83.2 9.1 77 288-373 89-175 (197)
146 KOG1460 GDP-mannose pyrophosph 98.7 3.7E-08 8.1E-13 87.2 6.5 66 291-370 284-350 (407)
147 PRK12461 UDP-N-acetylglucosami 98.7 7.4E-08 1.6E-12 86.9 8.4 49 311-359 41-93 (255)
148 PLN02474 UTP--glucose-1-phosph 98.7 1.2E-05 2.5E-10 77.9 23.8 178 7-194 78-307 (469)
149 TIGR03308 phn_thr-fam phosphon 98.7 1.4E-07 3E-12 82.3 9.8 65 310-374 47-140 (204)
150 cd04651 LbH_G1P_AT_C Glucose-1 98.7 6E-08 1.3E-12 75.2 6.8 53 311-374 7-59 (104)
151 COG1044 LpxD UDP-3-O-[3-hydrox 98.7 5.8E-08 1.3E-12 88.4 7.6 44 287-334 115-159 (338)
152 TIGR01173 glmU UDP-N-acetylglu 98.7 5.5E-08 1.2E-12 95.8 8.2 46 310-364 307-352 (451)
153 cd04745 LbH_paaY_like paaY-lik 98.7 1.4E-07 3E-12 78.9 9.4 48 313-369 75-123 (155)
154 TIGR01852 lipid_A_lpxA acyl-[a 98.7 1.3E-07 2.8E-12 85.8 9.8 57 316-374 76-133 (254)
155 TIGR01172 cysE serine O-acetyl 98.7 1.2E-07 2.7E-12 79.6 8.8 83 288-373 60-144 (162)
156 cd03350 LbH_THP_succinylT 2,3, 98.7 1.3E-07 2.8E-12 77.5 8.6 10 316-325 55-64 (139)
157 cd00208 LbetaH Left-handed par 98.6 2.5E-07 5.4E-12 67.4 9.1 72 297-373 2-75 (78)
158 TIGR00965 dapD 2,3,4,5-tetrahy 98.6 1.4E-07 3E-12 84.3 8.9 18 317-334 174-191 (269)
159 TIGR02287 PaaY phenylacetic ac 98.6 1.5E-07 3.2E-12 81.2 8.4 69 295-373 47-117 (192)
160 PRK00892 lpxD UDP-3-O-[3-hydro 98.6 1.4E-07 3E-12 89.4 8.9 50 316-374 148-217 (343)
161 PRK14358 glmU bifunctional N-a 98.6 1.1E-07 2.3E-12 94.3 8.4 68 292-373 267-335 (481)
162 PRK11132 cysE serine acetyltra 98.6 1.7E-07 3.7E-12 84.5 8.9 83 288-373 140-224 (273)
163 PRK14356 glmU bifunctional N-a 98.6 9.8E-08 2.1E-12 94.2 8.1 64 310-373 315-386 (456)
164 TIGR03536 DapD_gpp 2,3,4,5-tet 98.6 2.1E-07 4.6E-12 84.0 9.0 84 288-373 183-279 (341)
165 PLN02694 serine O-acetyltransf 98.6 1.9E-07 4.1E-12 84.2 8.6 82 289-373 160-243 (294)
166 PRK12461 UDP-N-acetylglucosami 98.6 2.2E-07 4.8E-12 83.8 9.1 52 317-371 78-130 (255)
167 PF02348 CTP_transf_3: Cytidyl 98.6 2.3E-07 5E-12 82.0 9.0 112 10-136 1-120 (217)
168 cd03354 LbH_SAT Serine acetylt 98.6 4.5E-07 9.8E-12 69.9 9.4 83 289-374 2-86 (101)
169 PRK09451 glmU bifunctional N-a 98.6 1.5E-07 3.2E-12 92.9 8.2 75 289-373 271-348 (456)
170 cd04650 LbH_FBP Ferripyochelin 98.6 4.2E-07 9.1E-12 75.8 9.6 25 344-368 97-122 (154)
171 cd03352 LbH_LpxD UDP-3-O-acyl- 98.6 3.4E-07 7.4E-12 80.3 9.3 31 343-373 92-127 (205)
172 PLN02296 carbonate dehydratase 98.6 3E-07 6.4E-12 83.3 9.0 48 315-372 118-166 (269)
173 cd03358 LbH_WxcM_N_like WcxM-l 98.5 3.1E-07 6.6E-12 73.1 8.0 38 315-361 66-103 (119)
174 TIGR03570 NeuD_NnaD sugar O-ac 98.5 4.4E-07 9.5E-12 79.0 9.7 15 291-305 95-109 (201)
175 cd00710 LbH_gamma_CA Gamma car 98.5 4.2E-07 9.2E-12 76.9 9.2 34 339-372 95-128 (167)
176 PRK13627 carnitine operon prot 98.5 4.6E-07 1E-11 78.4 9.4 67 297-373 51-119 (196)
177 PRK05293 glgC glucose-1-phosph 98.5 2.6E-07 5.6E-12 89.0 8.4 62 297-372 310-376 (380)
178 PRK14353 glmU bifunctional N-a 98.5 3E-07 6.4E-12 90.5 8.6 24 310-333 314-338 (446)
179 PLN02357 serine acetyltransfer 98.5 4.8E-07 1E-11 84.0 8.9 81 290-373 227-309 (360)
180 cd04645 LbH_gamma_CA_like Gamm 98.5 9.7E-07 2.1E-11 73.6 9.9 49 312-369 73-122 (153)
181 PRK14352 glmU bifunctional N-a 98.5 4.6E-07 1E-11 90.0 9.3 87 287-373 281-387 (482)
182 cd03359 LbH_Dynactin_5 Dynacti 98.5 9.3E-07 2E-11 74.3 9.7 18 316-333 72-89 (161)
183 cd03359 LbH_Dynactin_5 Dynacti 98.5 6.5E-07 1.4E-11 75.3 8.2 16 317-332 43-58 (161)
184 PRK10191 putative acyl transfe 98.5 9.1E-07 2E-11 72.6 8.5 75 294-372 46-122 (146)
185 PLN02739 serine acetyltransfer 98.4 5.1E-07 1.1E-11 83.1 7.6 80 290-372 206-287 (355)
186 PRK14354 glmU bifunctional N-a 98.4 8E-07 1.7E-11 87.8 8.5 17 317-333 317-333 (458)
187 TIGR03308 phn_thr-fam phosphon 98.4 8.6E-07 1.9E-11 77.3 7.6 58 287-359 12-69 (204)
188 cd04647 LbH_MAT_like Maltose O 98.4 2E-06 4.3E-11 67.1 8.9 57 316-372 21-88 (109)
189 cd04646 LbH_Dynactin_6 Dynacti 98.4 1.6E-06 3.5E-11 73.1 8.8 52 311-371 78-130 (164)
190 PRK11132 cysE serine acetyltra 98.4 9.4E-07 2E-11 79.7 7.7 44 316-369 193-236 (273)
191 PRK14360 glmU bifunctional N-a 98.4 7.6E-07 1.7E-11 87.7 7.6 71 288-367 273-355 (450)
192 PRK10191 putative acyl transfe 98.4 1.7E-06 3.6E-11 71.0 8.3 48 317-373 93-140 (146)
193 PRK11830 dapD 2,3,4,5-tetrahyd 98.4 1.4E-06 3E-11 78.6 8.5 69 288-365 143-217 (272)
194 COG0663 PaaY Carbonic anhydras 98.4 1.2E-06 2.5E-11 72.9 7.3 52 295-359 72-123 (176)
195 cd00897 UGPase_euk Eukaryotic 98.4 2.4E-05 5.1E-10 71.9 16.5 177 8-194 3-231 (300)
196 COG1208 GCD1 Nucleoside-diphos 98.4 1.5E-06 3.2E-11 82.7 9.0 57 288-354 266-324 (358)
197 COG1043 LpxA Acyl-[acyl carrie 98.4 8.8E-07 1.9E-11 76.5 6.5 21 338-358 76-96 (260)
198 COG1045 CysE Serine acetyltran 98.4 1.6E-06 3.5E-11 72.9 7.9 84 288-374 66-157 (194)
199 cd05825 LbH_wcaF_like wcaF-lik 98.3 2.9E-06 6.3E-11 66.1 8.6 58 316-373 23-87 (107)
200 cd00208 LbetaH Left-handed par 98.3 2.2E-06 4.7E-11 62.3 7.5 33 317-358 45-77 (78)
201 PRK09527 lacA galactoside O-ac 98.3 3.9E-06 8.4E-11 72.8 10.2 77 294-374 74-169 (203)
202 COG0448 GlgC ADP-glucose pyrop 98.3 1.2E-06 2.6E-11 81.6 7.3 70 293-374 271-342 (393)
203 cd03352 LbH_LpxD UDP-3-O-acyl- 98.3 2.5E-06 5.5E-11 74.7 8.9 76 289-373 7-105 (205)
204 PLN02694 serine O-acetyltransf 98.3 2.3E-06 5.1E-11 77.3 8.6 45 315-369 211-255 (294)
205 PRK14357 glmU bifunctional N-a 98.3 1.5E-06 3.2E-11 85.7 7.7 87 288-374 266-372 (448)
206 TIGR01208 rmlA_long glucose-1- 98.3 2E-06 4.4E-11 81.9 8.3 29 342-370 321-352 (353)
207 PRK14359 glmU bifunctional N-a 98.3 2.2E-06 4.8E-11 83.9 8.7 75 288-373 252-328 (430)
208 cd03357 LbH_MAT_GAT Maltose O- 98.3 3.8E-06 8.3E-11 71.2 8.3 36 295-333 62-99 (169)
209 PRK10092 maltose O-acetyltrans 98.3 7E-06 1.5E-10 70.3 9.9 76 293-372 71-159 (183)
210 PRK10502 putative acyl transfe 98.3 4E-06 8.6E-11 71.9 8.3 77 296-373 72-155 (182)
211 cd05635 LbH_unknown Uncharacte 98.3 5.8E-06 1.3E-10 63.6 8.3 62 296-371 12-73 (101)
212 cd03357 LbH_MAT_GAT Maltose O- 98.2 8.8E-06 1.9E-10 69.0 9.9 37 316-361 118-154 (169)
213 COG1861 SpsF Spore coat polysa 98.2 7.6E-06 1.6E-10 70.0 9.2 111 9-137 3-124 (241)
214 COG1043 LpxA Acyl-[acyl carrie 98.2 2.4E-06 5.1E-11 73.9 6.0 76 286-374 6-95 (260)
215 PRK10092 maltose O-acetyltrans 98.2 6E-06 1.3E-10 70.7 8.6 44 316-369 129-172 (183)
216 TIGR03535 DapD_actino 2,3,4,5- 98.2 7E-06 1.5E-10 73.9 9.2 83 289-373 165-254 (319)
217 PLN02357 serine acetyltransfer 98.2 3.9E-06 8.4E-11 78.0 7.6 38 316-362 278-315 (360)
218 TIGR01172 cysE serine O-acetyl 98.2 9.5E-06 2.1E-10 68.2 9.1 34 317-359 114-147 (162)
219 PLN02739 serine acetyltransfer 98.2 5.6E-06 1.2E-10 76.4 8.0 43 317-369 258-300 (355)
220 PRK09527 lacA galactoside O-ac 98.2 7.8E-06 1.7E-10 70.9 8.5 44 316-369 131-174 (203)
221 cd04649 LbH_THP_succinylT_puta 98.2 1E-05 2.3E-10 65.4 8.2 19 289-307 7-25 (147)
222 PRK00844 glgC glucose-1-phosph 98.2 6.6E-06 1.4E-10 79.9 8.4 49 302-360 332-382 (407)
223 PRK00725 glgC glucose-1-phosph 98.2 3E-06 6.5E-11 82.7 6.0 52 312-374 323-374 (425)
224 cd04647 LbH_MAT_like Maltose O 98.1 1.7E-05 3.7E-10 61.8 8.9 46 314-369 56-101 (109)
225 TIGR02091 glgC glucose-1-phosp 98.1 8.3E-06 1.8E-10 78.0 7.8 61 290-360 295-361 (361)
226 PF07959 Fucokinase: L-fucokin 98.1 3.1E-05 6.8E-10 74.9 11.6 84 109-196 55-158 (414)
227 TIGR02092 glgD glucose-1-phosp 98.1 8.1E-06 1.8E-10 78.3 7.4 68 289-366 289-361 (369)
228 PRK10502 putative acyl transfe 98.1 2.2E-05 4.7E-10 67.4 8.9 16 290-305 72-87 (182)
229 PRK09677 putative lipopolysacc 98.1 3.8E-05 8.3E-10 66.4 10.3 78 295-373 65-161 (192)
230 PRK02862 glgC glucose-1-phosph 98.0 9.2E-06 2E-10 79.4 6.6 54 310-374 302-374 (429)
231 cd03349 LbH_XAT Xenobiotic acy 98.0 4.2E-05 9.1E-10 62.9 9.2 44 316-369 73-116 (145)
232 cd03354 LbH_SAT Serine acetylt 98.0 3.8E-05 8.3E-10 59.1 8.4 37 315-360 53-89 (101)
233 PRK09677 putative lipopolysacc 98.0 2.8E-05 6.1E-10 67.3 8.4 45 315-369 129-173 (192)
234 COG1045 CysE Serine acetyltran 98.0 2.3E-05 5E-10 66.0 7.4 37 316-361 119-155 (194)
235 cd05825 LbH_wcaF_like wcaF-lik 98.0 4.8E-05 1E-09 59.2 8.6 38 316-362 56-93 (107)
236 TIGR03536 DapD_gpp 2,3,4,5-tet 98.0 3E-05 6.4E-10 70.3 8.0 21 288-308 177-197 (341)
237 PF00132 Hexapep: Bacterial tr 98.0 7.8E-06 1.7E-10 50.0 3.0 35 316-359 1-35 (36)
238 PLN02435 probable UDP-N-acetyl 98.0 0.00032 7E-09 68.5 15.6 182 7-195 115-363 (493)
239 cd03349 LbH_XAT Xenobiotic acy 97.9 5.9E-05 1.3E-09 62.0 8.7 29 344-372 74-103 (145)
240 PRK00576 molybdopterin-guanine 97.9 5.2E-05 1.1E-09 64.8 8.6 91 31-131 3-101 (178)
241 PF01704 UDPGP: UTP--glucose-1 97.9 0.00034 7.4E-09 67.5 14.9 180 7-195 55-287 (420)
242 PLN02241 glucose-1-phosphate a 97.9 4.2E-05 9.1E-10 75.0 8.8 49 297-359 333-400 (436)
243 KOG1322 GDP-mannose pyrophosph 97.8 2.1E-05 4.5E-10 71.2 3.7 40 316-359 276-315 (371)
244 COG4284 UDP-glucose pyrophosph 97.7 0.0017 3.6E-08 62.3 15.6 177 7-192 104-335 (472)
245 COG2171 DapD Tetrahydrodipicol 97.7 0.0001 2.2E-09 65.2 6.9 87 288-374 125-220 (271)
246 cd06424 UGGPase UGGPase cataly 97.7 0.00088 1.9E-08 61.9 13.1 178 10-195 2-252 (315)
247 TIGR03535 DapD_actino 2,3,4,5- 97.7 0.00016 3.4E-09 65.4 7.8 84 288-374 170-261 (319)
248 PF14602 Hexapep_2: Hexapeptid 97.7 7.6E-05 1.6E-09 44.8 3.8 32 317-359 2-33 (34)
249 PRK13412 fkp bifunctional fuco 97.6 0.00048 1E-08 72.4 11.2 83 109-197 154-247 (974)
250 KOG4042 Dynactin subunit p27/W 97.4 0.00012 2.5E-09 58.5 2.9 81 291-371 22-130 (190)
251 COG0110 WbbJ Acetyltransferase 97.3 0.0007 1.5E-08 58.4 7.2 37 316-361 124-160 (190)
252 TIGR02353 NRPS_term_dom non-ri 97.3 0.00075 1.6E-08 69.8 8.2 57 317-373 617-676 (695)
253 KOG4750 Serine O-acetyltransfe 97.3 0.00052 1.1E-08 58.8 5.6 16 316-331 174-189 (269)
254 PLN02830 UDP-sugar pyrophospho 97.2 0.0051 1.1E-07 62.0 13.0 143 7-157 127-323 (615)
255 KOG4750 Serine O-acetyltransfe 97.2 0.00065 1.4E-08 58.3 5.5 62 288-358 167-233 (269)
256 TIGR02353 NRPS_term_dom non-ri 97.2 0.00094 2E-08 69.0 7.8 43 316-367 645-688 (695)
257 COG4801 Predicted acyltransfer 97.2 0.001 2.2E-08 57.3 6.3 76 288-372 15-98 (277)
258 PF00132 Hexapep: Bacterial tr 97.1 0.00037 8E-09 42.4 2.2 12 318-329 21-32 (36)
259 COG0110 WbbJ Acetyltransferase 97.0 0.0019 4E-08 55.7 7.0 28 344-371 125-153 (190)
260 KOG3121 Dynactin, subunit p25 97.0 0.00065 1.4E-08 53.9 3.6 63 297-372 86-149 (184)
261 KOG3121 Dynactin, subunit p25 96.8 0.0021 4.6E-08 51.0 4.3 18 316-333 84-101 (184)
262 KOG4042 Dynactin subunit p27/W 96.3 0.0034 7.4E-08 50.3 2.9 37 314-359 93-129 (190)
263 KOG2638 UDP-glucose pyrophosph 96.0 1.3 2.7E-05 42.2 18.6 131 7-144 102-275 (498)
264 COG4801 Predicted acyltransfer 95.2 0.056 1.2E-06 46.9 6.3 65 295-373 16-81 (277)
265 TIGR03552 F420_cofC 2-phospho- 94.8 0.085 1.8E-06 45.5 6.6 81 41-131 30-117 (195)
266 PF00535 Glycos_transf_2: Glyc 94.6 0.31 6.8E-06 39.8 9.3 103 36-142 4-115 (169)
267 cd00761 Glyco_tranf_GTA_type G 93.3 0.71 1.5E-05 36.7 9.0 91 37-131 4-103 (156)
268 KOG2388 UDP-N-acetylglucosamin 91.6 1 2.2E-05 43.7 8.5 42 7-53 96-140 (477)
269 PF07959 Fucokinase: L-fucokin 91.0 0.38 8.2E-06 46.8 5.2 48 310-367 278-325 (414)
270 cd04195 GT2_AmsE_like GT2_AmsE 89.7 2.7 5.9E-05 35.8 9.1 94 35-133 3-108 (201)
271 cd04186 GT_2_like_c Subfamily 89.3 4.1 8.8E-05 33.1 9.6 90 37-133 4-102 (166)
272 cd06423 CESA_like CESA_like is 88.0 3.8 8.1E-05 33.3 8.6 95 36-133 3-106 (180)
273 TIGR01556 rhamnosyltran L-rham 87.8 11 0.00024 34.3 12.2 86 43-133 9-101 (281)
274 cd06439 CESA_like_1 CESA_like_ 86.8 8.3 0.00018 34.2 10.7 99 28-132 25-136 (251)
275 PLN02726 dolichyl-phosphate be 86.3 7.3 0.00016 34.6 10.0 59 79-140 69-128 (243)
276 cd02510 pp-GalNAc-T pp-GalNAc- 86.3 27 0.00058 32.1 14.2 54 79-135 59-113 (299)
277 cd04188 DPG_synthase DPG_synth 85.7 4.7 0.0001 34.8 8.3 59 80-141 59-118 (211)
278 KOG2978 Dolichol-phosphate man 84.6 7 0.00015 33.3 8.0 97 40-141 17-124 (238)
279 cd06427 CESA_like_2 CESA_like_ 84.5 8.5 0.00018 34.0 9.5 60 78-140 59-119 (241)
280 cd04185 GT_2_like_b Subfamily 84.4 7.5 0.00016 33.1 8.8 88 42-131 10-105 (202)
281 cd06442 DPM1_like DPM1_like re 84.1 9 0.0002 33.1 9.4 57 80-139 55-112 (224)
282 PRK10714 undecaprenyl phosphat 84.0 7.8 0.00017 36.4 9.3 58 77-138 64-122 (325)
283 cd04196 GT_2_like_d Subfamily 83.1 8.2 0.00018 33.0 8.6 93 37-132 5-106 (214)
284 cd04187 DPM1_like_bac Bacteria 81.6 10 0.00022 31.6 8.5 58 79-140 56-114 (181)
285 cd04179 DPM_DPG-synthase_like 81.1 10 0.00023 31.5 8.4 58 81-141 57-115 (185)
286 cd06435 CESA_NdvC_like NdvC_li 81.0 8.4 0.00018 33.8 8.0 91 36-131 4-110 (236)
287 cd02526 GT2_RfbF_like RfbF is 79.6 41 0.00088 29.2 13.0 85 39-127 7-97 (237)
288 PRK11204 N-glycosyltransferase 78.9 12 0.00026 36.3 9.0 96 35-134 59-163 (420)
289 cd02520 Glucosylceramide_synth 78.2 22 0.00047 30.2 9.5 35 93-130 76-111 (196)
290 cd06433 GT_2_WfgS_like WfgS an 74.8 24 0.00051 29.5 8.8 85 42-133 11-103 (202)
291 PRK10073 putative glycosyl tra 74.5 24 0.00052 33.2 9.4 56 80-139 63-119 (328)
292 PF13641 Glyco_tranf_2_3: Glyc 74.4 11 0.00024 32.7 6.8 94 36-135 7-116 (228)
293 cd06438 EpsO_like EpsO protein 74.0 51 0.0011 27.5 10.8 51 86-137 59-112 (183)
294 PRK14583 hmsR N-glycosyltransf 73.9 18 0.0004 35.5 8.8 97 34-134 79-184 (444)
295 cd02525 Succinoglycan_BP_ExoA 72.1 26 0.00055 30.7 8.7 79 54-137 34-113 (249)
296 TIGR03472 HpnI hopanoid biosyn 71.7 20 0.00042 34.4 8.2 95 35-132 46-153 (373)
297 cd04192 GT_2_like_e Subfamily 70.8 35 0.00075 29.3 9.1 45 88-135 67-112 (229)
298 cd06421 CESA_CelA_like CESA_Ce 70.6 44 0.00096 28.9 9.8 92 36-132 7-111 (234)
299 COG1216 Predicted glycosyltran 70.6 89 0.0019 28.8 12.3 99 38-139 12-118 (305)
300 PRK13412 fkp bifunctional fuco 69.9 7.5 0.00016 41.8 5.2 24 242-265 283-307 (974)
301 PF01983 CofC: Guanylyl transf 68.8 5.7 0.00012 34.9 3.4 103 9-130 1-113 (217)
302 PF07302 AroM: AroM protein; 67.0 69 0.0015 28.2 9.7 107 10-129 90-199 (221)
303 cd04184 GT2_RfbC_Mx_like Myxoc 66.3 52 0.0011 27.7 9.1 49 80-131 60-109 (202)
304 cd06420 GT2_Chondriotin_Pol_N 65.2 37 0.0008 28.0 7.8 86 42-130 10-104 (182)
305 TIGR03111 glyc2_xrt_Gpos1 puta 64.7 49 0.0011 32.4 9.6 94 36-134 55-160 (439)
306 COG1215 Glycosyltransferases, 64.1 33 0.00071 33.3 8.3 97 35-134 59-166 (439)
307 PRK10018 putative glycosyl tra 61.7 84 0.0018 28.7 9.9 63 64-132 49-112 (279)
308 cd06434 GT2_HAS Hyaluronan syn 59.9 54 0.0012 28.4 8.2 84 42-131 14-103 (235)
309 PTZ00260 dolichyl-phosphate be 59.3 63 0.0014 30.4 8.9 60 79-141 138-201 (333)
310 PRK11498 bcsA cellulose syntha 58.5 64 0.0014 34.6 9.5 92 35-135 265-369 (852)
311 PRK10063 putative glycosyl tra 55.7 1.5E+02 0.0033 26.4 10.6 48 80-131 60-107 (248)
312 PF10111 Glyco_tranf_2_2: Glyc 55.3 1.1E+02 0.0024 27.8 9.6 38 88-128 73-111 (281)
313 TIGR03469 HonB hopene-associat 55.2 92 0.002 29.9 9.5 49 89-137 114-165 (384)
314 cd06913 beta3GnTL1_like Beta 1 46.6 1.4E+02 0.003 25.6 8.5 45 87-134 68-113 (219)
315 cd06436 GlcNAc-1-P_transferase 43.9 1.9E+02 0.0042 24.2 8.9 43 88-130 63-114 (191)
316 cd02522 GT_2_like_a GT_2_like_ 42.8 1.7E+02 0.0037 24.8 8.6 43 89-134 58-101 (221)
317 cd02511 Beta4Glucosyltransfera 39.8 2.5E+02 0.0055 24.3 9.6 82 42-133 13-99 (229)
318 COG1664 CcmA Integral membrane 39.0 70 0.0015 26.2 4.9 54 296-359 58-117 (146)
319 PRK13915 putative glucosyl-3-p 38.9 1.7E+02 0.0037 27.1 8.2 51 88-141 100-153 (306)
320 cd06437 CESA_CaSu_A2 Cellulose 38.9 1.1E+02 0.0023 26.6 6.6 50 77-129 60-111 (232)
321 TIGR03030 CelA cellulose synth 37.6 2.1E+02 0.0045 30.2 9.4 52 80-134 204-257 (713)
322 cd04191 Glucan_BSP_ModH Glucan 36.4 2.4E+02 0.0052 25.3 8.5 57 77-134 66-124 (254)
323 PRK14716 bacteriophage N4 adso 31.1 3.6E+02 0.0078 27.1 9.4 53 78-130 124-182 (504)
324 PF01762 Galactosyl_T: Galacto 30.8 3.3E+02 0.0072 23.0 9.5 22 175-196 144-165 (195)
325 COG1664 CcmA Integral membrane 27.7 96 0.0021 25.4 4.0 22 313-334 47-69 (146)
326 KOG2977 Glycosyltransferase [G 27.1 3.4E+02 0.0073 25.1 7.5 85 42-129 84-181 (323)
327 PRK10481 hypothetical protein; 26.2 4.6E+02 0.01 23.2 10.7 83 44-130 119-204 (224)
328 PF13712 Glyco_tranf_2_5: Glyc 22.7 4.2E+02 0.0092 23.1 7.5 58 80-140 31-90 (217)
329 PF05679 CHGN: Chondroitin N-a 22.2 3E+02 0.0065 27.6 7.1 87 35-123 252-358 (499)
330 TIGR00639 PurN phosphoribosylg 20.5 4.7E+02 0.01 22.3 7.1 16 9-26 1-16 (190)
331 PF14134 DUF4301: Domain of un 20.4 3.7E+02 0.008 26.8 6.9 91 30-123 165-299 (513)
No 1
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-56 Score=386.39 Aligned_cols=366 Identities=61% Similarity=1.014 Sum_probs=317.0
Q ss_pred ceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccchHHHHHHHHhhcccCCccEE
Q 016989 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVR 81 (379)
Q Consensus 8 ~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~~~i~~~l~~~~~~~~~~i~ 81 (379)
+++||||.||+|+||||+||..+.||||+||+|+|||+|.|+.+.+ |++++.++++.+.+|+......+.+.+.
T Consensus 2 ~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~~e~~~pvr 81 (407)
T KOG1460|consen 2 KVKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGVPMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQQEFKVPVR 81 (407)
T ss_pred ceEEEEEecCCCCCccccccccCCCCCccccCCcchhhhhHHHHhcccchhheeEEecccchHHHHHHHHHHhhcccchh
Confidence 5799999999999999999999999999999999999999999987 9999999888899999988888999999
Q ss_pred EecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCC
Q 016989 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDT 161 (379)
Q Consensus 82 ~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~ 161 (379)
|..++.++||++.|+.-++.+-...|+.+++++||..+++.|++|++.|.+.+...++++++....++.+||.++.|+++
T Consensus 82 YL~E~~plGtaGgLyhFrdqIl~g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~tkvs~e~asnfG~lV~dP~t 161 (407)
T KOG1460|consen 82 YLREDNPLGTAGGLYHFRDQILAGSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLVTKVSREQASNFGCLVEDPST 161 (407)
T ss_pred hhccCCCCCcccceeehhhHHhcCCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEEEEecHhHhhccCeeeecCCc
Confidence 99999999999999999998876678899999999999999999999999999999999999988889999999999889
Q ss_pred CcEEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccccCC
Q 016989 162 NELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK 241 (379)
Q Consensus 162 ~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~ 241 (379)
++|+.+.|||...-++.+++|+|+|++++|+.+.+....+.+-.. ...+...+++ .+.||..|+.|++..|+.+
T Consensus 162 ~evlHYveKPsTfvSd~InCGvYlF~~eif~~i~~v~~q~~~~~~--~~~~~~~l~~----g~~d~irLeqDvlspLag~ 235 (407)
T KOG1460|consen 162 GEVLHYVEKPSTFVSDIINCGVYLFTPEIFNAIAEVYRQRQDLLE--VEKDLPLLQP----GPADFIRLEQDVLSPLAGS 235 (407)
T ss_pred CceEEeecCcchhhhcccceeEEEecHHHHHHHHHHHHHHHhhhh--hhhcccccCC----CccceEEeechhhhhhcCC
Confidence 999999999999999999999999999999999877644322010 0112223333 3789999999999999999
Q ss_pred ceEEEEEcccchhhcCCccchhhcchHHHHhhhhcCCccccCCC-----------------CCCCeEEecCeEECCCcEE
Q 016989 242 KQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGD-----------------GTKNATIIGDVYVHPSAKI 304 (379)
Q Consensus 242 ~~v~~~~~~~~w~~i~t~~d~~~a~~~~l~~~~~~~~~~~~~~~-----------------~~~~~~i~~~~~i~~~~~i 304 (379)
.++++|..+++|.++.|+..-+.|+++|+++++...+..+..++ .+++++|+|+|.||.+++|
T Consensus 236 k~lY~y~t~~fW~QiKtagsal~as~lYLs~yk~t~p~~Lak~pgt~a~IigdVyIhPsakvhptAkiGPNVSIga~vrv 315 (407)
T KOG1460|consen 236 KQLYAYETTDFWSQIKTAGSALYASRLYLSQYKRTHPARLAKGPGTQAEIIGDVYIHPSAKVHPTAKIGPNVSIGANVRV 315 (407)
T ss_pred CceEEEecccHHHHhccccceeehhhhHHHHHhhcCchhhcCCCCCCceEEeeeEEcCcceeCCccccCCCceecCCcee
Confidence 99999999999999999999999999999999876666554332 1466777777777777777
Q ss_pred CCCCC-------------CCcEEeceEECCCCEECCCcEEeecccccc----cccceEECCCcEECCCcEEeccEECCCc
Q 016989 305 HPTAK-------------ENAVVTNAIVGWKSSIGRWSRVQAEGDFNA----KLGITILGEAVGVEDEVVVTNSIVLPNK 367 (379)
Q Consensus 305 ~~~~~-------------~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~----~~~~sii~~~~~i~~~~~i~~~ii~~~~ 367 (379)
++|++ +++.|-+|+||..|.||..++|...-+..+ .+.-+++|+.|.+++.|.|.||++.++-
T Consensus 316 g~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv~~s~~~~~~a~Tilga~v~v~dev~v~~s~vlp~k 395 (407)
T KOG1460|consen 316 GPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPVEPSPNLPFAALTILGADVSVEDEVIVLNSIVLPNK 395 (407)
T ss_pred cCCceeeeeeeccCcEeeccceEEeeeecccccccceeeecccccccCCCCCcceeEEecccceecceeEEeeeeEecCC
Confidence 77776 788888899999999999998877655422 2334899999999999999999999999
Q ss_pred eecccccccccC
Q 016989 368 TLNVSVHQEIIL 379 (379)
Q Consensus 368 ~i~~~~~~~~~~ 379 (379)
.+.-.+.++||+
T Consensus 396 ~l~vs~~~eIil 407 (407)
T KOG1460|consen 396 ELNVSVQDEIIL 407 (407)
T ss_pred ccceeeecceeC
Confidence 999999999986
No 2
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=8.2e-54 Score=377.13 Aligned_cols=325 Identities=31% Similarity=0.514 Sum_probs=271.4
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHH-HHHHHHhhcccCCccE
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEERE-FALYVSSISNELRIPV 80 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~-i~~~l~~~~~~~~~~i 80 (379)
+.|+|+||.|| .||||+|||..+|||++|++++|||+|++++|.+ |++.+++..++ .++..+.+...+|+++
T Consensus 8 ~~vkaiILvGG--~GTRLrPLT~t~pKPlVpfgn~pmI~hqieal~nsGi~~I~la~~y~s~sl~~~~~k~y~~~lgVei 85 (371)
T KOG1322|consen 8 QSVKAIILVGG--YGTRLRPLTLTRPKPLVPFGNKPMILHQIEALINSGITKIVLATQYNSESLNRHLSKAYGKELGVEI 85 (371)
T ss_pred cceeEEEEecC--CCceeeceeccCCCcccccCcchhhHHHHHHHHhCCCcEEEEEEecCcHHHHHHHHHHhhhccceEE
Confidence 57999999999 9999999999999999999999999999999987 77777776664 4445556666788999
Q ss_pred EEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCC
Q 016989 81 RYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPD 160 (379)
Q Consensus 81 ~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~ 160 (379)
.+..+.+++|+++.+..+++++......+|+|+++|+++++++++|+++|++++++.|++++++. +++.||++..|++
T Consensus 86 ~~s~eteplgtaGpl~laR~~L~~~~~~~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI~~t~vd--epSkyGvv~~d~~ 163 (371)
T KOG1322|consen 86 LASTETEPLGTAGPLALARDFLWVFEDAPFFVLNSDVICRMPYKEMVQFHRAHGAEITIVVTKVD--EPSKYGVVVIDED 163 (371)
T ss_pred EEEeccCCCcccchHHHHHHHhhhcCCCcEEEecCCeeecCCHHHHHHHHHhcCCceEEEEEecc--CccccceEEEecC
Confidence 88888889999999999999887643336999999999999999999999999999999999994 6999999999976
Q ss_pred CCcEEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccccC
Q 016989 161 TNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAG 240 (379)
Q Consensus 161 ~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~ 240 (379)
+++|.+|.|||+...++-.++|+|+|+|++++.+... +|| ++.+++|.+++
T Consensus 164 ~grV~~F~EKPkd~vsnkinaGiYi~~~~vL~ri~~~------------ptS-----------------iekEifP~~a~ 214 (371)
T KOG1322|consen 164 TGRVIRFVEKPKDLVSNKINAGIYILNPEVLDRILLR------------PTS-----------------IEKEIFPAMAE 214 (371)
T ss_pred CCceeEehhCchhhhhccccceEEEECHHHHhHhhhc------------ccc-----------------hhhhhhhhhhh
Confidence 8999999999998889999999999999999888732 222 23789999999
Q ss_pred CceEEEEEcccchhhcCCccchhhcchHHHHhhhhcCCccccCCCCCCCeEEecCeEECCCcEECCCCCCCcEEe-ceEE
Q 016989 241 KKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDVYVHPSAKIHPTAKENAVVT-NAIV 319 (379)
Q Consensus 241 ~~~v~~~~~~~~w~~i~t~~d~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~~~~~i~-~s~i 319 (379)
+.++++|.++|||.|||+|+||+.+..+|+++.....+..+. +++.+.+++.+.+-+.++. +|.|+ +++|
T Consensus 215 ~~~l~a~~l~gfWmDIGqpkdf~~g~~~Yl~s~~~~t~~r~~-----p~~~i~~nvlvd~~~~iG~----~C~Ig~~vvI 285 (371)
T KOG1322|consen 215 EHQLYAFDLPGFWMDIGQPKDFLTGFSFYLRSLPKYTSPRLL-----PGSKIVGNVLVDSIASIGE----NCSIGPNVVI 285 (371)
T ss_pred cCceEEEecCchhhhcCCHHHHHHHHHHHHhhCcccCCcccc-----CCccccccEeeccccccCC----ccEECCCceE
Confidence 999999999999999999999999999998876544333322 3355566666666666663 44576 4788
Q ss_pred CCCCEECCCcEEeeccc-------ccccccceEECCCcEECCCcEEe-ccEECCCceecccc
Q 016989 320 GWKSSIGRWSRVQAEGD-------FNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTLNVSV 373 (379)
Q Consensus 320 g~~~~ig~~~~i~~~~~-------~~~~~~~sii~~~~~i~~~~~i~-~~ii~~~~~i~~~~ 373 (379)
|++|+|+++++|.+..+ ..++++.|+++.+|.||.++.|. +|+||+++.|.+..
T Consensus 286 G~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~~id~~a~lG~nV~V~d~~ 347 (371)
T KOG1322|consen 286 GPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWNVPIGIWARIDKNAVLGKNVIVADED 347 (371)
T ss_pred CCCcEecCceEEEeeEEEccceechhHHHHhhhccccccccCceEEecccEeccceEEeccc
Confidence 88888888877777665 25566779999999999999995 88999999887643
No 3
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-50 Score=380.83 Aligned_cols=313 Identities=32% Similarity=0.519 Sum_probs=261.0
Q ss_pred ceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEEE
Q 016989 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (379)
Q Consensus 8 ~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~ 82 (379)
.|+||||||| +||||+|+|..+||||+||+|+|||+|+|++|.+ +++++.+..+.+++|+++. ..++.++.|
T Consensus 1 ~mkavILagG--~GtRLrPlT~~~PKPllpI~gkPii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d~-~~~~~~I~y 77 (358)
T COG1208 1 PMKAVILAGG--YGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDG-EGLGVRITY 77 (358)
T ss_pred CceEEEEeCC--ccccccccccCCCcccceeCCccHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhcc-cccCCceEE
Confidence 4799999999 9999999999999999999999999999999976 6666666666799999874 567899999
Q ss_pred ecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCCC
Q 016989 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN 162 (379)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~ 162 (379)
..+..++||+++|+.+.+++.. ++|++++||.+++.|+++++++|+++++..+++..+.. ++..||.+..+.+++
T Consensus 78 ~~e~~~lGTag~l~~a~~~l~~---~~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~--~~~~~Gvv~~~~~~~ 152 (358)
T COG1208 78 VVEKEPLGTAGALKNALDLLGG---DDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVL--DPSEFGVVETDDGDG 152 (358)
T ss_pred EecCCcCccHHHHHHHHHhcCC---CcEEEEECCeeeccCHHHHHHHHHhccCccEEEEEecC--CCCcCceEEecCCCc
Confidence 9999999999999999999975 36999999999999999999999998777888887774 448899888874346
Q ss_pred cEEEeeecCC--CcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccccC
Q 016989 163 ELLHYTEKPE--TFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAG 240 (379)
Q Consensus 163 ~v~~~~ekp~--~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~ 240 (379)
+|.+|.|||. ...++++++|+|+|+|++|+++.... ..+|. .++++.+++
T Consensus 153 ~v~~f~ekp~~~~~~~~~in~Giyi~~~~v~~~i~~~~-------------------------~~~~~---~~~~~~l~~ 204 (358)
T COG1208 153 RVVEFREKPGPEEPPSNLINAGIYIFDPEVFDYIEKGE-------------------------RFDFE---EELLPALAA 204 (358)
T ss_pred eEEEEEecCCCCCCCCceEEeEEEEECHHHhhhcccCC-------------------------cccch---hhHHHHHHh
Confidence 9999999993 56789999999999999999665322 22332 578888887
Q ss_pred Cce-EEEEEcccchhhcCCccchhhcchHHHHhhhhcCCccccCC--CCCCCeEEecCeEECCCcEECCCCCCCcEEe-c
Q 016989 241 KKQ-LYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASG--DGTKNATIIGDVYVHPSAKIHPTAKENAVVT-N 316 (379)
Q Consensus 241 ~~~-v~~~~~~~~w~~i~t~~d~~~a~~~~l~~~~~~~~~~~~~~--~~~~~~~i~~~~~i~~~~~i~~~~~~~~~i~-~ 316 (379)
... +++|.++|+|.|+|+|++|++|++.++.............. .... +.+.+++++++++.|++++ .|+ .
T Consensus 205 ~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~gp~~ig~~~~i~~~~----~i~~~ 279 (358)
T COG1208 205 KGEDVYGYVFEGYWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVIIRS-AYIIGPVVIGPGAKIGPGA----LIGPY 279 (358)
T ss_pred CCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHhccccccccccccccccccc-ceEeCCEEECCCCEECCCC----EECCC
Confidence 776 99999999999999999999999888754332111100000 0123 7889999999999999765 466 7
Q ss_pred eEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCceecc
Q 016989 317 AIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNV 371 (379)
Q Consensus 317 s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~~ 371 (379)
|+||++|+||+++.|.+ |+|+++|.|++++.|.+|||+.+++||+
T Consensus 280 ~~ig~~~~I~~~~~i~~----------Sii~~~~~i~~~~~i~~sIi~~~~~ig~ 324 (358)
T COG1208 280 TVIGEGVTIGNGVEIKN----------SIIMDNVVIGHGSYIGDSIIGENCKIGA 324 (358)
T ss_pred cEECCCCEECCCcEEEe----------eEEEcCCEECCCCEEeeeEEcCCcEECC
Confidence 88888888888888887 9999999999999999999999999997
No 4
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.7e-50 Score=366.48 Aligned_cols=331 Identities=24% Similarity=0.411 Sum_probs=264.1
Q ss_pred CCCceEEEEEecCCCCCCccCCCCCCCCCCCceeCCc-chhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCc
Q 016989 5 EDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRI 78 (379)
Q Consensus 5 ~~~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~-pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~ 78 (379)
|++++.|+||||| .|+||.|||+.++||.+|++|| .+|+.+|+++.+ |.|++.+...++.+||+.. +.|+.
T Consensus 2 ~~~~~laiILaGg--~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~SL~~Hi~~G-~~w~l 78 (393)
T COG0448 2 MKKNVLAIILAGG--RGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLNDHIGRG-WPWDL 78 (393)
T ss_pred CccceEEEEEcCC--CCCccchhhhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchhHHHHHhhCC-Ccccc
Confidence 4578899999999 9999999999999999999999 999999999987 8999998888999999974 44532
Q ss_pred c-----EEEec-------CCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCC
Q 016989 79 P-----VRYLR-------EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSA 146 (379)
Q Consensus 79 ~-----i~~~~-------~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~ 146 (379)
. +.... +.+..||++|+++-+..+....+|+++++.||+++.+|++++++.|.++++++|+++.+++.
T Consensus 79 ~~~~~~v~ilp~~~~~~~~~wy~Gtadai~Qnl~~i~~~~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~~Vp~ 158 (393)
T COG0448 79 DRKNGGVFILPAQQREGGERWYEGTADAIYQNLLIIRRSDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPR 158 (393)
T ss_pred ccccCcEEEeCchhccCCCcceeccHHHHHHhHHHHHhcCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEEECCh
Confidence 1 22222 23678999999999988887678999999999999999999999999999999999999998
Q ss_pred CCCCceeEEEEeCCCCcEEEeeecCCC-cccc-eeeeeEEEeCHhhH-HHhhccccccccchhhhhcchhhhhhhhcccc
Q 016989 147 ESASQFGELVADPDTNELLHYTEKPET-FVSD-LINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSATRNL 223 (379)
Q Consensus 147 ~~~~~~g~v~~d~~~~~v~~~~ekp~~-~~~~-~~~~Giy~~~~~~l-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (379)
.++++||++.+|+ +++|..|.|||.. +..+ ++++|+|+|++++| ++|.+..... ..
T Consensus 159 ~eas~fGim~~D~-~~~i~~F~eKp~~~~~~~~laSMgiYIf~~~~L~~~L~~~~~~~--------------------~~ 217 (393)
T COG0448 159 EEASRFGVMNVDE-NGRIIEFVEKPADGPPSNSLASMGIYIFNTDLLKELLEEDAKDP--------------------NS 217 (393)
T ss_pred HhhhhcCceEECC-CCCEEeeeeccCcCCcccceeeeeeEEEcHHHHHHHHHHHhccc--------------------Cc
Confidence 8999999999995 8999999999987 4444 89999999998876 5555332110 12
Q ss_pred ccccccccccccccccCCceEEEEEcccchhhcCCccchhhcchHHHHh---hhhcCCc--cccCCCCCCCeEEecCeEE
Q 016989 224 TTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQ---FRLTSPN--LLASGDGTKNATIIGDVYV 298 (379)
Q Consensus 224 ~~~~~~l~~d~l~~l~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~l~~---~~~~~~~--~~~~~~~~~~~~i~~~~~i 298 (379)
..||. .+++|.+.+...+++|+++|||.|+||.++|++||..+++. +....+. +.......+.+++..+..+
T Consensus 218 ~~Dfg---kdiIp~~~~~~~v~AY~f~gYw~dVgTi~syy~aNmdLl~~~~~~~lyd~~w~IyT~~~~~pPak~~~~s~v 294 (393)
T COG0448 218 SHDFG---KDIIPKLLERGKVYAYEFSGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKFVNDSEV 294 (393)
T ss_pred cccch---HHHHHHHHhcCCEEEEeccchhhhcccHHHHHHhhHHhcCCCCcccccCCCCceeecCCCCCCceEecCceE
Confidence 34453 89999988888899999999999999999999999666541 1111222 1111112233333332221
Q ss_pred CCCcEECCCCC-CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCceeccccc
Q 016989 299 HPSAKIHPTAK-ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVH 374 (379)
Q Consensus 299 ~~~~~i~~~~~-~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~ 374 (379)
.++-|..||+ .+ .|.+|+++.++.|+++|.|.+ |+|+.+|.||+||+|++|||..+++|++++.
T Consensus 295 -~nSLv~~GciI~G-~V~nSVL~~~v~I~~gs~i~~----------svim~~~~IG~~~~l~~aIIDk~v~I~~g~~ 359 (393)
T COG0448 295 -SNSLVAGGCIISG-TVENSVLFRGVRIGKGSVIEN----------SVIMPDVEIGEGAVLRRAIIDKNVVIGEGVV 359 (393)
T ss_pred -eeeeeeCCeEEEe-EEEeeEEecCeEECCCCEEEe----------eEEeCCcEECCCCEEEEEEeCCCcEeCCCcE
Confidence 1223333443 34 889999999999999999988 9999999999999999999999999999875
No 5
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=2.2e-48 Score=375.71 Aligned_cols=328 Identities=24% Similarity=0.386 Sum_probs=253.1
Q ss_pred CCCceEEEEEecCCCCCCccCCCCCCCCCCCceeCCc-chhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccC-C
Q 016989 5 EDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR-----IYLVGFYEEREFALYVSSISNEL-R 77 (379)
Q Consensus 5 ~~~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~-pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~-~ 77 (379)
|+++++||||||| .||||+|||..+||||+||+|| |||+|+|++|.+ |+|++++..+++.+|+... +.+ +
T Consensus 2 ~~~~~~avILAaG--~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~-~~~~~ 78 (407)
T PRK00844 2 AMPKVLAIVLAGG--EGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKSHSLDRHISQT-WRLSG 78 (407)
T ss_pred CCCceEEEEECCC--CCCccchhhcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccCHHHHHHHHHhC-cCccc
Confidence 5678999999999 9999999999999999999999 999999999986 7777776777799999742 211 2
Q ss_pred ccEEEe---cC------CCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCCC
Q 016989 78 IPVRYL---RE------DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAES 148 (379)
Q Consensus 78 ~~i~~~---~~------~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~~ 148 (379)
..+.++ .+ ...+||+++++.+++++.++.+++|++++||++++.|+.++++.|.++++++|+++.+.+..+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~lGta~al~~a~~~i~~~~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~~~~~~~ 158 (407)
T PRK00844 79 LLGNYITPVPAQQRLGKRWYLGSADAIYQSLNLIEDEDPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPREE 158 (407)
T ss_pred cCCCeEEECCcccCCCCCcccCCHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEEecchHH
Confidence 222222 11 125899999999999997543457999999999999999999999998888999888765457
Q ss_pred CCceeEEEEeCCCCcEEEeeecCCCcc-------cceeeeeEEEeCHhhH-HHhhccccccccchhhhhcchhhhhhhhc
Q 016989 149 ASQFGELVADPDTNELLHYTEKPETFV-------SDLINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSAT 220 (379)
Q Consensus 149 ~~~~g~v~~d~~~~~v~~~~ekp~~~~-------~~~~~~Giy~~~~~~l-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (379)
+..||.+..|+ +++|..|.|||..+. ..++++|+|+|++++| +.+.+....+.+
T Consensus 159 ~~~~Gvv~~d~-~g~v~~~~eKp~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~----------------- 220 (407)
T PRK00844 159 ASAFGVIEVDP-DGRIRGFLEKPADPPGLPDDPDEALASMGNYVFTTDALVDALRRDAADEDS----------------- 220 (407)
T ss_pred cccCCEEEECC-CCCEEEEEECCCCcccccCCCCCcEEEeEEEEEeHHHHHHHHHHhhcCCcc-----------------
Confidence 78999999985 689999999986432 5789999999999986 666542211100
Q ss_pred cccccccccccccccccccCCceEEEEEc------------ccchhhcCCccchhhcchHHHHhhhhc---CCc--cccC
Q 016989 221 RNLTTDFVRLDQDILSPLAGKKQLYTYET------------MDFWEQIKTPGMSLKCSGLYLAQFRLT---SPN--LLAS 283 (379)
Q Consensus 221 ~~~~~~~~~l~~d~l~~l~~~~~v~~~~~------------~~~w~~i~t~~d~~~a~~~~l~~~~~~---~~~--~~~~ 283 (379)
..++ ..|+++.+.++.++++|.+ .|+|.|+++|++|++|++.++...... .+. ....
T Consensus 221 ---~~~~---~~dii~~l~~~~~v~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~~~~~~~~~~~~~~~~ 294 (407)
T PRK00844 221 ---SHDM---GGDIIPRLVERGRAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPVFNLYNREWPIYTS 294 (407)
T ss_pred ---cccc---hhhHHHHHhccCeEEEEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhCCCCccccCCCCCccccc
Confidence 1112 2689999888788999976 589999999999999998887532111 000 0000
Q ss_pred C-CCCCCe--------EEecCeEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECC
Q 016989 284 G-DGTKNA--------TIIGDVYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVED 354 (379)
Q Consensus 284 ~-~~~~~~--------~i~~~~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~ 354 (379)
. ..++.. .+.++++|++++.|+ + +.|++|+||++|.|+++|+|.+ |+|+++|.|++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~ig~~~~I~-~----~~i~~svIg~~~~I~~~~~i~~----------sii~~~~~i~~ 359 (407)
T PRK00844 295 SPNLPPAKFVDGGGRVGSAQDSLVSAGSIIS-G----ATVRNSVLSPNVVVESGAEVED----------SVLMDGVRIGR 359 (407)
T ss_pred CCCCCCceEecCCCccceEEeCEEcCCCEEC-C----eeeEcCEECCCCEECCCCEEee----------eEECCCCEECC
Confidence 0 011111 234457777777776 4 4688999999999999999988 99999999999
Q ss_pred CcEEeccEECCCceeccccc
Q 016989 355 EVVVTNSIVLPNKTLNVSVH 374 (379)
Q Consensus 355 ~~~i~~~ii~~~~~i~~~~~ 374 (379)
+|.|.+|+|++++.|++++.
T Consensus 360 ~~~i~~~ii~~~~~i~~~~~ 379 (407)
T PRK00844 360 GAVVRRAILDKNVVVPPGAT 379 (407)
T ss_pred CCEEEeeEECCCCEECCCCE
Confidence 99999999999999999864
No 6
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=3.5e-48 Score=372.28 Aligned_cols=331 Identities=22% Similarity=0.355 Sum_probs=247.4
Q ss_pred CCceEEEEEecCCCCCCccCCCCCCCCCCCceeCCc-chhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCc-
Q 016989 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRI- 78 (379)
Q Consensus 6 ~~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~-pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~- 78 (379)
|++|+||||||| +||||+|||..+||||+||+|+ |||+|++++|.+ |+|++++..+.+++|+++. ..|++
T Consensus 1 ~~~m~avILAaG--~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~-~~~~~~ 77 (380)
T PRK05293 1 KKEMLAMILAGG--QGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLELNNHIGIG-SPWDLD 77 (380)
T ss_pred CCcEEEEEECCC--CCcccchhhcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCCHHHHHHHHhCC-Cccccc
Confidence 367999999999 9999999999999999999999 899999999986 6666666667799999753 33442
Q ss_pred ------cEE--EecCCC---CCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCC
Q 016989 79 ------PVR--YLREDK---PHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAE 147 (379)
Q Consensus 79 ------~i~--~~~~~~---~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~ 147 (379)
.+. +..+.. ..||+++++.++++++...+++|++++||++++.++.++++.|.+.++++++++.+.+..
T Consensus 78 ~~~~~~~i~~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~~~~~~~ 157 (380)
T PRK05293 78 RINGGVTILPPYSESEGGKWYKGTAHAIYQNIDYIDQYDPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWE 157 (380)
T ss_pred CCCCCEEEeCCcccCCCCcccCCcHHHHHHHHHHHHhCCCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEEEEcchh
Confidence 222 333322 589999999999999643235799999999999999999999998888888888776555
Q ss_pred CCCceeEEEEeCCCCcEEEeeecCCCcccceeeeeEEEeCHhhHH-Hhhccccccccchhhhhcchhhhhhhhccccccc
Q 016989 148 SASQFGELVADPDTNELLHYTEKPETFVSDLINCGVYVFTPDIFN-AIQGVSSQRKDRENLRRVSSFEALQSATRNLTTD 226 (379)
Q Consensus 148 ~~~~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (379)
++..||.+..++ +++|..+.|||..+..++.++|+|+|++++|. .+.+...... ...+
T Consensus 158 ~~~~yG~v~~d~-~g~V~~~~eKp~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~--------------------~~~~ 216 (380)
T PRK05293 158 EASRFGIMNTDE-NMRIVEFEEKPKNPKSNLASMGIYIFNWKRLKEYLIEDEKNPN--------------------SSHD 216 (380)
T ss_pred hccccCEEEECC-CCcEEEEEeCCCCCCcceeeeEEEEEcHHHHHHHHHHHhhcCC--------------------chhh
Confidence 788999998874 68999999999776788999999999999874 4432211100 0112
Q ss_pred cccccccccccccCC-ceEEEEEcccchhhcCCccchhhcchHHHHhhhhc---CCc--cccCCCCCCCeEEecCeEECC
Q 016989 227 FVRLDQDILSPLAGK-KQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLT---SPN--LLASGDGTKNATIIGDVYVHP 300 (379)
Q Consensus 227 ~~~l~~d~l~~l~~~-~~v~~~~~~~~w~~i~t~~d~~~a~~~~l~~~~~~---~~~--~~~~~~~~~~~~i~~~~~i~~ 300 (379)
|. .|+++.++++ .++++|..+++|.++|++++|++|+..++...... .+. ........+.++|++++.| .
T Consensus 217 ~~---~d~i~~l~~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i-~ 292 (380)
T PRK05293 217 FG---KNVIPLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAKV-K 292 (380)
T ss_pred hH---HHHHHHHhhcCCeEEEEEeCCEEEeCCCHHHHHHHHHHHcCCCchhhhcCCCCceecCCcCCCCCEECCCCEE-e
Confidence 22 6888888754 68999999999999999999999986665432111 000 0011111223444444444 2
Q ss_pred CcEECCCCCCCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCceeccccc
Q 016989 301 SAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVH 374 (379)
Q Consensus 301 ~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~ 374 (379)
++.|+++|.-...+.+|+||++|.||++|+|.+ |+|+++|.|+++|.|.+|+|++++.|++++.
T Consensus 293 ~~~Ig~~~~I~~~v~~s~ig~~~~I~~~~~i~~----------svi~~~~~i~~~~~i~~~ii~~~~~i~~~~~ 356 (380)
T PRK05293 293 NSLVVEGCVVYGTVEHSVLFQGVQVGEGSVVKD----------SVIMPGAKIGENVVIERAIIGENAVIGDGVI 356 (380)
T ss_pred cCEECCCCEEcceecceEEcCCCEECCCCEEEC----------CEEeCCCEECCCeEEeEEEECCCCEECCCCE
Confidence 334444443112456899999999999999987 9999999999999999999999999998775
No 7
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=100.00 E-value=7.2e-46 Score=352.65 Aligned_cols=321 Identities=25% Similarity=0.376 Sum_probs=255.6
Q ss_pred EEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEccc-chHHHHHHHHhhcccCCccEEEe
Q 016989 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFY-EEREFALYVSSISNELRIPVRYL 83 (379)
Q Consensus 10 ~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~-~~~~i~~~l~~~~~~~~~~i~~~ 83 (379)
+||||||| .|+||+|+|..+||||+|++|+|||+|+++.+.+ +++++.+ ..+.+++|++. ...+++++.++
T Consensus 1 kaiIlAaG--~gtRl~plt~~~pK~l~pv~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~i~~~~~~-~~~~~~~~~~~ 77 (353)
T TIGR01208 1 KALILAAG--KGTRLRPLTFTRPKQLIPVANKPILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVGE-GERFGAKITYI 77 (353)
T ss_pred CEEEECCc--CcCccCccccCCCccccEECCEeHHHHHHHHHHHCCCCEEEEEeCCCCHHHHHHHHhc-ccccCceEEEE
Confidence 58999999 9999999999999999999999999999999986 5555555 66679999875 24567777777
Q ss_pred cCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCCCc
Q 016989 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNE 163 (379)
Q Consensus 84 ~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~~ 163 (379)
.+....|++++++.+++++.+ +++++++||++++.++.++++.|.++++++++++.+.. ++..|+.+..+ ++++
T Consensus 78 ~~~~~~G~~~al~~a~~~l~~---~~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~--~~~~~g~~~~~-~~~~ 151 (353)
T TIGR01208 78 VQGEPLGLAHAVYTARDFLGD---DDFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVR--DPTAFGVAVLE-DGKR 151 (353)
T ss_pred ECCCCCCHHHHHHHHHHhcCC---CCEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEECC--ChhhCeEEEEc-CCCc
Confidence 777789999999999999854 35999999999999999999999998999999988763 56789988876 3568
Q ss_pred EEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccccCC-c
Q 016989 164 LLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK-K 242 (379)
Q Consensus 164 v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~-~ 242 (379)
|..+.|||....+.+.++|+|+|++.+++.+....+.. +++ ++ + .++++.++++ .
T Consensus 152 v~~~~ekp~~~~~~~~~~Giy~~~~~l~~~l~~~~~~~-~~e---------------------~~-l-~d~l~~l~~~g~ 207 (353)
T TIGR01208 152 ILKLVEKPKEPPSNLAVVGLYMFRPLIFEAIKNIKPSW-RGE---------------------LE-I-TDAIQWLIEKGY 207 (353)
T ss_pred EEEEEECCCCCCccceEEEEEEECHHHHHHHHhcCCCC-CCc---------------------EE-H-HHHHHHHHHcCC
Confidence 99999999877788999999999998888886543211 111 11 1 6788877754 6
Q ss_pred eEEEEEcccchhhcCCccchhhcchHHHHhhhhcCCccccCCCCCCCeEEecCeEECCCcEE-----CCCCC--CCcEEe
Q 016989 243 QLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDVYVHPSAKI-----HPTAK--ENAVVT 315 (379)
Q Consensus 243 ~v~~~~~~~~w~~i~t~~d~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i-----~~~~~--~~~~i~ 315 (379)
++++|.++++|.++|||++|++|++.++.+... .+ + + ..+++.+.+++.|++++.| .++|. ++|.|+
T Consensus 208 ~v~~~~~~g~w~digt~~dl~~a~~~ll~~~~~---~~-~-~-i~~~~~i~~~~~i~~~~~i~~~~i~~~~~Ig~~~~I~ 281 (353)
T TIGR01208 208 KVGGSKVTGWWKDTGKPEDLLDANRLILDEVER---EV-Q-G-VDDESKIRGRVVVGEGAKIVNSVIRGPAVIGEDCIIE 281 (353)
T ss_pred eEEEEEeCcEEEeCCCHHHHHHHHHHHHhhccc---cc-C-C-cCCCCEEcCCEEECCCCEEeCCEEECCcEECCCCEEc
Confidence 899999999999999999999999888865321 11 1 1 2344555555555555555 22222 677888
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCc-EEeccEECCCceeccccc
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEV-VVTNSIVLPNKTLNVSVH 374 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~-~i~~~ii~~~~~i~~~~~ 374 (379)
+++|+++|.||++|.|++ +.+++|+|+++|.|+.++ .+.+|++++++.|++++.
T Consensus 282 ~~~i~~~~~Ig~~~~i~~-----~~i~~s~i~~~~~i~~~~~~~~~~ii~~~~~i~~~~~ 336 (353)
T TIGR01208 282 NSYIGPYTSIGEGVVIRD-----AEVEHSIVLDESVIEGVQARIVDSVIGKKVRIKGNRR 336 (353)
T ss_pred CcEECCCCEECCCCEEee-----eEEEeeEEcCCCEEcCCcceeecCEEcCCCEECCCcc
Confidence 888888888888888874 566679999999999884 889999999999999865
No 8
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=2.6e-46 Score=362.42 Aligned_cols=328 Identities=20% Similarity=0.315 Sum_probs=249.9
Q ss_pred CCCceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcc-hhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccC--
Q 016989 5 EDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQP-MVHHPISACKR-----IYLVGFYEEREFALYVSSISNEL-- 76 (379)
Q Consensus 5 ~~~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~p-li~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~-- 76 (379)
|+++++||||||| +||||+|||..+||||+|++|+| ||+|+++.+.+ |+|++++..+.+.+|+++. +.+
T Consensus 12 ~~~~~~aVILAaG--~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~~~~i~~~~~~~-~~~~~ 88 (425)
T PRK00725 12 LTRDTLALILAGG--RGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKAHSLIRHIQRG-WSFFR 88 (425)
T ss_pred hhcceEEEEECCC--CCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCCHHHHHHHHHhh-hcccc
Confidence 4577999999999 99999999999999999999997 99999999986 7777777777799999752 111
Q ss_pred ---CccEEEe-------cCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCC
Q 016989 77 ---RIPVRYL-------REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSA 146 (379)
Q Consensus 77 ---~~~i~~~-------~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~ 146 (379)
+..+.+. .++..+||+++++.+++++....+++|++++||++++.|+.++++.|.++++++|+++.+.+.
T Consensus 89 ~~~~~~i~i~~~~~~~~~e~~~lGTa~al~~a~~~l~~~~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~~~~~ 168 (425)
T PRK00725 89 EELGEFVDLLPAQQRVDEENWYRGTADAVYQNLDIIRRYDPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLEVPR 168 (425)
T ss_pred cCCCCeEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEEecch
Confidence 1112111 123468999999999999974333579999999999999999999999999999999887655
Q ss_pred CCCCceeEEEEeCCCCcEEEeeecCCCc-------ccceeeeeEEEeCHhhH-HHhhccccccccchhhhhcchhhhhhh
Q 016989 147 ESASQFGELVADPDTNELLHYTEKPETF-------VSDLINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQS 218 (379)
Q Consensus 147 ~~~~~~g~v~~d~~~~~v~~~~ekp~~~-------~~~~~~~Giy~~~~~~l-~~l~~~~~~~~~~~~~~~~~~~~~~~~ 218 (379)
.++..||.+..|+ +++|..|.|||..+ ...++++|+|+|++++| +.|.+......
T Consensus 169 ~~~~~yG~v~~d~-~~~V~~~~EKp~~~~~~~~~~~~~l~n~GIYi~~~~~L~~~L~~~~~~~~---------------- 231 (425)
T PRK00725 169 EEASAFGVMAVDE-NDRITAFVEKPANPPAMPGDPDKSLASMGIYVFNADYLYELLEEDAEDPN---------------- 231 (425)
T ss_pred hhcccceEEEECC-CCCEEEEEECCCCccccccCccceEEEeeEEEEeHHHHHHHHHHhhcCCC----------------
Confidence 6788999999985 68999999998643 25789999999999976 56654221100
Q ss_pred hccccccccccccccccccccCCceEEEEEcc-----------cchhhcCCccchhhcchHHHHhhhh---cCCc--ccc
Q 016989 219 ATRNLTTDFVRLDQDILSPLAGKKQLYTYETM-----------DFWEQIKTPGMSLKCSGLYLAQFRL---TSPN--LLA 282 (379)
Q Consensus 219 ~~~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~-----------~~w~~i~t~~d~~~a~~~~l~~~~~---~~~~--~~~ 282 (379)
...+|. .|+++.++++.++++|.+. +||.|+++|++|++++..++..... .... +..
T Consensus 232 ----~~~~~~---~dii~~l~~~~~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~~~~~~~~~~~~i~t 304 (425)
T PRK00725 232 ----SSHDFG---KDIIPKIVEEGKVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVTPELDLYDRNWPIWT 304 (425)
T ss_pred ----ccchhh---HHHHHHHhccCcEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcCCCchhhccCCCCcccc
Confidence 011222 6899999888899999985 5999999999999999777642110 0000 101
Q ss_pred CCCC-CCCeE---------EecCeEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEE
Q 016989 283 SGDG-TKNAT---------IIGDVYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGV 352 (379)
Q Consensus 283 ~~~~-~~~~~---------i~~~~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i 352 (379)
.... ++..+ +..+++|++++.| . +|.|++|+||++|.||++|.|.+ |+|+++|.|
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~s~i~~~~~i-~----~~~i~~svi~~~~~I~~~~~i~~----------svi~~~~~I 369 (425)
T PRK00725 305 YQEQLPPAKFVFDRSGRRGMAINSLVSGGCII-S----GAVVRRSVLFSRVRVNSFSNVED----------SVLLPDVNV 369 (425)
T ss_pred CCCCCCCCeEeccCCCCcceEEeCEEcCCcEE-c----CccccCCEECCCCEECCCCEEee----------eEEcCCCEE
Confidence 1111 11111 1235566666666 3 35688999999999999999987 999999999
Q ss_pred CCCcEEeccEECCCceeccccc
Q 016989 353 EDEVVVTNSIVLPNKTLNVSVH 374 (379)
Q Consensus 353 ~~~~~i~~~ii~~~~~i~~~~~ 374 (379)
|++|+|.+|+|++++.|++++.
T Consensus 370 ~~~~~i~~~ii~~~~~i~~~~~ 391 (425)
T PRK00725 370 GRSCRLRRCVIDRGCVIPEGMV 391 (425)
T ss_pred CCCCEEeeEEECCCCEECCCCE
Confidence 9999999999999999888754
No 9
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=100.00 E-value=1.6e-45 Score=352.34 Aligned_cols=327 Identities=15% Similarity=0.225 Sum_probs=239.1
Q ss_pred ceEEEEEecCCCCCCccCCCCCCCCCCCceeCCc-chhHHHHHhcCc-----EEEEcccchH-HHHHHHHhhcccCCccE
Q 016989 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR-----IYLVGFYEER-EFALYVSSISNELRIPV 80 (379)
Q Consensus 8 ~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~-pli~~~i~~l~~-----iiv~~~~~~~-~i~~~l~~~~~~~~~~i 80 (379)
.|+||||||| +|+||+|||.++||||+||+|| |||+|++++|.+ |+|++++..+ .+++|+.+ ...|++++
T Consensus 2 ~~~avila~g--~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~~~~I~~~l~~-~~~~~~~~ 78 (369)
T TIGR02092 2 KMSAIINLTE--SSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQSLFDHLGS-GREWDLHR 78 (369)
T ss_pred cEEEEEECCC--CCccccccccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCcHHHHHHHHhC-CCCCCccc
Confidence 5899999999 9999999999999999999999 999999999987 6666555443 79999975 23455542
Q ss_pred ------EEec-CCCC--CChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCCCCCc
Q 016989 81 ------RYLR-EDKP--HGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQ 151 (379)
Q Consensus 81 ------~~~~-~~~~--~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~ 151 (379)
.+.. +... +|++.+++.++++++....++|++++||++++.|+.+++++|.++++++|+++.+.+..++..
T Consensus 79 ~~~~~~~~~~~e~~~l~tg~~~a~~~a~~~l~~~~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~v~~~~~~~ 158 (369)
T TIGR02092 79 KRDGLFVFPYNDRDDLSEGGKRYFSQNLEFLKRSTSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKVKPADASE 158 (369)
T ss_pred ccCcEEEEeccCCCCcccChHHHHHHHHHHHHhCCCCEEEEECCCEEEecCHHHHHHHHHHcCCCEEEEEEecCHHHccc
Confidence 1222 2223 366777888888885322357999999999999999999999999999999988864335677
Q ss_pred eeE-EEEeCCCCcEEEeeecCCCcccceeeeeEEEeCHhhH-HHhhccccccccchhhhhcchhhhhhhhcccccccccc
Q 016989 152 FGE-LVADPDTNELLHYTEKPETFVSDLINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVR 229 (379)
Q Consensus 152 ~g~-v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (379)
|+. +..++ +++|..+.+++........++|+|+|+++++ +.+.+..... ..++.
T Consensus 159 ~g~vv~~~~-~g~v~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~----------------------~~~~~- 214 (369)
T TIGR02092 159 YDTILRFDE-SGKVKSIGQNLNPEEEENISLDIYIVSTDLLIELLYECIQRG----------------------KLTSL- 214 (369)
T ss_pred cCcEEEEcC-CCCEEeccccCCCCCcceeeeeEEEEEHHHHHHHHHHHhhcC----------------------ccccH-
Confidence 854 45553 5688877554332234578999999999865 5554321100 00111
Q ss_pred ccccccccccCCceEEEEEcccchhhcCCccchhhcchHHHHhhhhcC-----C-ccccCCCCCCCeEEecCeEECCCcE
Q 016989 230 LDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTS-----P-NLLASGDGTKNATIIGDVYVHPSAK 303 (379)
Q Consensus 230 l~~d~l~~l~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~l~~~~~~~-----~-~~~~~~~~~~~~~i~~~~~i~~~~~ 303 (379)
.++++.++++.++++|..+++|.++|||++|++|++.+++.+.... . .+.......+.+.|++++.| +++.
T Consensus 215 --~d~i~~~~~~~~v~~~~~~g~w~dIgt~~~l~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~i-~~~~ 291 (369)
T TIGR02092 215 --EELIRENLKELNINAYEYTGYLANINSVKSYYKANMDLLDPQNFQSLFYSSQGPIYTKVKDEPPTYYAENSKV-ENSL 291 (369)
T ss_pred --HHHHHHHhccCcEEEEecCCceeEcCCHHHHHHHHHHHhCCcchhhhcCCCCCceeeccCCCCCcEEcCCCEE-EEeE
Confidence 5777777767789999999999999999999999977776543110 0 00011111234445554444 3445
Q ss_pred ECCCCCCCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCceeccccc
Q 016989 304 IHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVH 374 (379)
Q Consensus 304 i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~ 374 (379)
|+++|+-++.|.+|+|+++|.||++|+|.+ |+|+++|.|++++.+.+|+|+++++|+++++
T Consensus 292 Ig~~~~i~~~v~~s~i~~~~~I~~~~~i~~----------sii~~~~~I~~~~~i~~~ii~~~~~v~~~~~ 352 (369)
T TIGR02092 292 VANGCIIEGKVENSILSRGVHVGKDALIKN----------CIIMQRTVIGEGAHLENVIIDKDVVIEPNVK 352 (369)
T ss_pred EcCCCEEeeEEeCCEECCCCEECCCCEEEe----------eEEeCCCEECCCCEEEEEEECCCCEECCCCE
Confidence 555554223577899999999999999988 9999999999999999999999999998765
No 10
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=3.2e-45 Score=355.28 Aligned_cols=322 Identities=22% Similarity=0.353 Sum_probs=245.7
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCc-chhHHHHHhcCc-----EEEEcccchHHHHHHHHhhccc--C--
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR-----IYLVGFYEEREFALYVSSISNE--L-- 76 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~-pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~--~-- 76 (379)
++++||||||| .||||+|||..+||||+||+|+ |||+|++++|.+ |+|++.+..+.+++|+....+. +
T Consensus 2 ~~~~AVILAaG--~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~~~~i~~~l~~~~~~~~~~~ 79 (429)
T PRK02862 2 KRVLAIILGGG--AGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNSASLNRHISQTYNFDGFSG 79 (429)
T ss_pred CcEEEEEECCC--CCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCCHHHHHHHHhcCcCccccCC
Confidence 36899999999 9999999999999999999999 999999999986 6666666666799999752110 1
Q ss_pred C-ccEEEecCC-----CCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCCCCC
Q 016989 77 R-IPVRYLRED-----KPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESAS 150 (379)
Q Consensus 77 ~-~~i~~~~~~-----~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~ 150 (379)
+ +.+.+..+. ..+||+++++.+++++....+++|++++||++++.|+.++++.|.+.++++|+++.+.+..++.
T Consensus 80 g~~~i~~~~~~~~~~~~~lGTa~al~~a~~~l~~~~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~ 159 (429)
T PRK02862 80 GFVEVLAAQQTPENPSWFQGTADAVRKYLWHFQEWDVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEKDAS 159 (429)
T ss_pred CEEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEecChhhcc
Confidence 1 122221111 1379999999999998643345799999999999999999999999888899998876555678
Q ss_pred ceeEEEEeCCCCcEEEeeecCCCc---------------------ccceeeeeEEEeCHhhHH-Hhhccccccccchhhh
Q 016989 151 QFGELVADPDTNELLHYTEKPETF---------------------VSDLINCGVYVFTPDIFN-AIQGVSSQRKDRENLR 208 (379)
Q Consensus 151 ~~g~v~~d~~~~~v~~~~ekp~~~---------------------~~~~~~~Giy~~~~~~l~-~l~~~~~~~~~~~~~~ 208 (379)
.||.+..|+ +++|..|.|||... ...++++|+|+|++++|. .+.....
T Consensus 160 ~yG~i~~d~-~g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~~~--------- 229 (429)
T PRK02862 160 GFGLMKTDD-DGRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKNPE--------- 229 (429)
T ss_pred cceEEEECC-CCcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHCCC---------
Confidence 999999984 78999999998632 235889999999999985 4443210
Q ss_pred hcchhhhhhhhccccccccccccccccccccCCceEEEEEcccchhhcCCccchhhcchHHHHhhhhc----CC--cccc
Q 016989 209 RVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLT----SP--NLLA 282 (379)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~l~~~~~~----~~--~~~~ 282 (379)
..+ +..++++.+.++.++++|.++++|.++|||++|+++++.++....+. .+ .+..
T Consensus 230 ---------------~~~---~~~dil~~l~~~~~v~~~~~~g~w~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i~~ 291 (429)
T PRK02862 230 ---------------YTD---FGKEIIPEAIRDYKVQSYLFDGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYT 291 (429)
T ss_pred ---------------hhh---hHHHHHHHHhccCcEEEEEeCCEEEeCCCHHHHHHHHHHHHcCCCCcccccCCCCceec
Confidence 011 12578888888889999999999999999999999998776221110 00 0111
Q ss_pred CCCCCC-----CeEEecCeEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecccccccccceEECC---------
Q 016989 283 SGDGTK-----NATIIGDVYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGE--------- 348 (379)
Q Consensus 283 ~~~~~~-----~~~i~~~~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~--------- 348 (379)
.....+ ++.+. ++.||+++.| + ++.|++|+||++|.||++|.|.+ |+|+.
T Consensus 292 ~~~~~~~a~~~~~~~~-~~~ig~~~~i-~----~~~i~~svi~~~~~Ig~~~~i~~----------svi~~~~~~p~~~~ 355 (429)
T PRK02862 292 RARYLPPSKLLDATIT-ESIIAEGCII-K----NCSIHHSVLGIRSRIESGCTIED----------TLVMGADFYESSEE 355 (429)
T ss_pred cCCCCCCccccccEEE-eCEECCCCEE-C----CcEEEEEEEeCCcEECCCCEEEe----------eEEecCcccccccc
Confidence 111112 33333 3567777776 4 35688999999999999999988 88876
Q ss_pred ----------CcEECCCcEEeccEECCCceeccccc
Q 016989 349 ----------AVGVEDEVVVTNSIVLPNKTLNVSVH 374 (379)
Q Consensus 349 ----------~~~i~~~~~i~~~ii~~~~~i~~~~~ 374 (379)
+|.||++|.|.+|+|++++.||+++.
T Consensus 356 ~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~i~~~~~ 391 (429)
T PRK02862 356 REELRKEGKPPLGIGEGTTIKRAIIDKNARIGNNVR 391 (429)
T ss_pred cccccccCCcccEECCCCEEEEEEECCCcEECCCcE
Confidence 69999999999999999999999876
No 11
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=100.00 E-value=1.7e-44 Score=351.22 Aligned_cols=323 Identities=22% Similarity=0.368 Sum_probs=240.4
Q ss_pred CCceEEEEEecCCCCCCccCCCCCCCCCCCceeCCc-chhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCC--
Q 016989 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELR-- 77 (379)
Q Consensus 6 ~~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~-pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~-- 77 (379)
|++|+||||||| +|+||+|||..+||||+||+|+ |||+|+|+++.+ ++|++.+..+++.+|++.. +.++
T Consensus 1 ~~~~~aIIlA~G--~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~~~~i~~~l~~~-~~~~~~ 77 (436)
T PLN02241 1 PKSVAAIILGGG--AGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFNSASLNRHLSRA-YNFGNG 77 (436)
T ss_pred CCceEEEEEeCC--CCCcchhhhcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccCHHHHHHHHhcc-CCCCCC
Confidence 367999999999 9999999999999999999997 999999999986 7777666777799999752 2122
Q ss_pred -------ccEEEecC-----CCCCChHHHHHHHHHhhccCC---CCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEE
Q 016989 78 -------IPVRYLRE-----DKPHGSAGALYNFRDLIMEDN---PSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVI 142 (379)
Q Consensus 78 -------~~i~~~~~-----~~~~g~~~al~~~~~~i~~~~---~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~ 142 (379)
+.+.+..+ .+++|++++++.++.++.+.. .++|++++||++++.|+.++++.|.++++++|+++.
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~ 157 (436)
T PLN02241 78 GNFGDGFVEVLAATQTPGEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACL 157 (436)
T ss_pred cccCCCCEEEcCCcccCCCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEE
Confidence 22222222 246899999999887765321 357999999999999999999999999999999998
Q ss_pred EeCCCCCCceeEEEEeCCCCcEEEeeecCCCcc---------------------cceeeeeEEEeCHhhHH-Hhhccccc
Q 016989 143 KVSAESASQFGELVADPDTNELLHYTEKPETFV---------------------SDLINCGVYVFTPDIFN-AIQGVSSQ 200 (379)
Q Consensus 143 ~~~~~~~~~~g~v~~d~~~~~v~~~~ekp~~~~---------------------~~~~~~Giy~~~~~~l~-~l~~~~~~ 200 (379)
+.+..++.+||.+.+|+ +++|..|.|||..+. .+++++|+|+|++++|. .+.+..+.
T Consensus 158 ~v~~~~~~~ygvv~~d~-~~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~ 236 (436)
T PLN02241 158 PVDESRASDFGLMKIDD-TGRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPT 236 (436)
T ss_pred ecchhhcCcceEEEECC-CCCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhccc
Confidence 87655678999999974 789999999986432 37899999999999985 44432110
Q ss_pred cccchhhhhcchhhhhhhhccccccccccccccccccccCC-ceEEEEEcccchhhcCCccchhhcchHHHHhhhh---c
Q 016989 201 RKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK-KQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRL---T 276 (379)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~-~~v~~~~~~~~w~~i~t~~d~~~a~~~~l~~~~~---~ 276 (379)
..+|. .|+++.++.+ .++++|.++|+|.++++|++|++++..++..... .
T Consensus 237 -----------------------~~~~~---~dil~~l~~~g~~v~~~~~~gyw~dIg~~~~y~~a~~~~l~~~~~~~~~ 290 (436)
T PLN02241 237 -----------------------ANDFG---SEIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTKQPPKFSFY 290 (436)
T ss_pred -----------------------ccchh---HHHHHHHhhcCCeEEEEeeCCEEEECCCHHHHHHHHHHHhcCCchhhcc
Confidence 11222 6888888765 6899999999999999999999999888753210 0
Q ss_pred CC--ccccCCCCC-----CCeEEecCeEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecccccccccceEECC-
Q 016989 277 SP--NLLASGDGT-----KNATIIGDVYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGE- 348 (379)
Q Consensus 277 ~~--~~~~~~~~~-----~~~~i~~~~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~- 348 (379)
.+ .+....... .++.+.+ ++|+++++|+ + +.|++|+||++|.||++|+|.+ |+|+.
T Consensus 291 ~~~~~i~~~~~~~~~~~~~~~~i~~-s~I~~~~~I~-~----~~I~~svI~~~~~Ig~~~~I~~----------sii~g~ 354 (436)
T PLN02241 291 DPDAPIYTSPRFLPPSKIEDCRITD-SIISHGCFLR-E----CKIEHSVVGLRSRIGEGVEIED----------TVMMGA 354 (436)
T ss_pred CCCCcccccCCCCCCcEecCCeEEE-eEEcCCcEEc-C----eEEEeeEEcCCCEECCCCEEEE----------eEEECC
Confidence 00 111111111 2333433 5677777776 5 4678999999999999999988 44433
Q ss_pred ---------------C---cEECCCcEEeccEECCCceeccccc
Q 016989 349 ---------------A---VGVEDEVVVTNSIVLPNKTLNVSVH 374 (379)
Q Consensus 349 ---------------~---~~i~~~~~i~~~ii~~~~~i~~~~~ 374 (379)
+ +.||++|.|.+|+|++++.||+++.
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~~~~ 398 (436)
T PLN02241 355 DYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVV 398 (436)
T ss_pred CccccccccccccccCCcceEECCCCEEcceEecCCCEECCCcE
Confidence 2 3677777777777777777777653
No 12
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=100.00 E-value=2.6e-44 Score=343.18 Aligned_cols=326 Identities=23% Similarity=0.374 Sum_probs=245.7
Q ss_pred EEEEecCCCCCCccCCCCCCCCCCCceeCCc-chhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCC----ccE
Q 016989 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELR----IPV 80 (379)
Q Consensus 11 aVIla~G~~~gtRl~~lt~~~pK~llpi~g~-pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~----~~i 80 (379)
||||||| .|+||+|+|+++||||+|++|+ |||+|+++.|.+ |+|++.+..+.+.+|+... ..+. ..+
T Consensus 1 aiILAaG--~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~-~~~~~~~~~~~ 77 (361)
T TIGR02091 1 AMVLAGG--RGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLNRHIQRG-WDFDGFIDGFV 77 (361)
T ss_pred CEEeCCC--CCCccchhhhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccChHHHHHHHHhc-cCccCccCCCE
Confidence 6999999 9999999999999999999999 899999999986 6666666656689998742 1111 122
Q ss_pred EEe-------cCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCCCCCcee
Q 016989 81 RYL-------REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFG 153 (379)
Q Consensus 81 ~~~-------~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g 153 (379)
.+. .++...|++++++.+.+++....+++|++++||++++.++.++++.|.++++++++++.+.+..++..||
T Consensus 78 ~~~~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g 157 (361)
T TIGR02091 78 TLLPAQQRESGTDWYQGTADAVYQNLDLIEDYDPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFG 157 (361)
T ss_pred EEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHhccccc
Confidence 221 1223589999999999988643345799999999999999999999988888888888876555678999
Q ss_pred EEEEeCCCCcEEEeeecCCCcccc-------eeeeeEEEeCHhhH-HHhhccccccccchhhhhcchhhhhhhhcccccc
Q 016989 154 ELVADPDTNELLHYTEKPETFVSD-------LINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSATRNLTT 225 (379)
Q Consensus 154 ~v~~d~~~~~v~~~~ekp~~~~~~-------~~~~Giy~~~~~~l-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (379)
.+..++ +++|..+.|||..+... +.++|+|+|++++| +.+.+...... ...
T Consensus 158 ~v~~d~-~~~v~~~~ekp~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~--------------------~~~ 216 (361)
T TIGR02091 158 VMQVDE-DGRIVDFEEKPANPPSIPGMPDFALASMGIYIFDKDVLKELLEEDADDPE--------------------SSH 216 (361)
T ss_pred EEEECC-CCCEEEEEECCCCcccccccccccEEeeeEEEEcHHHHHHHHHHHhhcCC--------------------ccc
Confidence 999874 68999999998655455 89999999999986 55553221110 011
Q ss_pred ccccccccccccccCCceEEEEEcccchhhcCCccchhhcchHHHHhhhhcC---Ccccc---CCCCCCCeEEecCeEEC
Q 016989 226 DFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTS---PNLLA---SGDGTKNATIIGDVYVH 299 (379)
Q Consensus 226 ~~~~l~~d~l~~l~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~l~~~~~~~---~~~~~---~~~~~~~~~i~~~~~i~ 299 (379)
++ ..++++.++++.++++|.++++|.++||+++|++|+..++.+..... ..... ....++++.+++.+.|
T Consensus 217 ~~---~~d~l~~l~~~~~v~~~~~~~~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i- 292 (361)
T TIGR02091 217 DF---GKDIIPRALEEGSVQAYLFSGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSDAQV- 292 (361)
T ss_pred cc---HHHHHHHHhhcCceEEEeeCCEEEECCCHHHHHHHHHHHhCCCchhhccccCCceecCCCCCCCceEecCCCEE-
Confidence 12 26888888887899999999999999999999999988775432110 00100 0112345555555322
Q ss_pred CCcEECCCCC-CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCceeccccc
Q 016989 300 PSAKIHPTAK-ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVH 374 (379)
Q Consensus 300 ~~~~i~~~~~-~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~ 374 (379)
+++.|+++|+ ..+.|.+|+||++|.||++|+|.+ |+|+++|.||++|.|.+|+|+++++|+.++.
T Consensus 293 ~~~~ig~~~~I~~~~v~~s~i~~~~~I~~~~~i~~----------sii~~~~~v~~~~~l~~~ivg~~~~i~~~~~ 358 (361)
T TIGR02091 293 VDSLVSEGCIISGATVSHSVLGIRVRIGSGSTVED----------SVIMGDVGIGRGAVIRNAIIDKNVRIGEGVV 358 (361)
T ss_pred ECCEECCCCEECCCEEEccEECCCCEECCCCEEee----------eEEeCCCEECCCCEEeeeEECCCCEECCCCE
Confidence 2344444444 222678999999999999999987 9999999999999999999999999999864
No 13
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=4.6e-42 Score=297.74 Aligned_cols=230 Identities=25% Similarity=0.441 Sum_probs=204.3
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----E-EEEcccchHHHHHHHHhhcccCCccEEE
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----I-YLVGFYEEREFALYVSSISNELRIPVRY 82 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----i-iv~~~~~~~~i~~~l~~~~~~~~~~i~~ 82 (379)
|+||||||| .||||+|+|...||+|+||.+||||+|+|+.|.. | +|+++.....+.+++++ ..+||+++.|
T Consensus 1 mKgiILAgG--~GTRL~PlT~~~~KqLlpV~~KPmi~y~l~~L~~aGI~dI~II~~~~~~~~~~~llGd-gs~~gv~itY 77 (286)
T COG1209 1 MKGVILAGG--SGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLAGIRDILIVVGPEDKPTFKELLGD-GSDFGVDITY 77 (286)
T ss_pred CCcEEecCc--CccccccccccCCcccceecCcchhHhHHHHHHHcCCceEEEEecCCchhhhhhhhcC-ccccCcceEE
Confidence 689999999 9999999999999999999999999999999986 4 55566555668888887 4679999999
Q ss_pred ecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCCC
Q 016989 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN 162 (379)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~ 162 (379)
..|+++.|-|+|+..+.+++.++ +|+++.||+++..++.++++.+.+++.+++++..++. +|++||++.+|+ ++
T Consensus 78 ~~Q~~p~GlA~Av~~a~~fv~~~---~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V~--dP~rfGV~e~d~-~~ 151 (286)
T COG1209 78 AVQPEPDGLAHAVLIAEDFVGDD---DFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVD--DPSRYGVVEFDE-DG 151 (286)
T ss_pred EecCCCCcHHHHHHHHHhhcCCC---ceEEEecCceeccChHHHHHHHhccCCCcEEEEEEcC--CcccceEEEEcC-CC
Confidence 99999999999999999999853 6999999999955999999998888888999999994 899999999995 67
Q ss_pred cEEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccccCC-
Q 016989 163 ELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK- 241 (379)
Q Consensus 163 ~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~- 241 (379)
+|.++.|||+.++++|+-+|+|+|++++|+.++...++.+++.++ +|+++.++++
T Consensus 152 ~v~~l~EKP~~P~SNlAvtGlY~~d~~Vf~~~~~ikPS~RGElEI------------------------Td~i~~~i~~G 207 (286)
T COG1209 152 KVIGLEEKPKEPKSNLAVTGLYFYDPSVFEAIKQIKPSARGELEI------------------------TDAIDLYIEKG 207 (286)
T ss_pred cEEEeEECCCCCCCceeEEEEEEeChHHHHHHHcCCCCCCCceEe------------------------hHHHHHHHHcC
Confidence 999999999999999999999999999999999988887765542 6777777654
Q ss_pred ceEEEEEcccchhhcCCccchhhcchHHHH
Q 016989 242 KQLYTYETMDFWEQIKTPGMSLKCSGLYLA 271 (379)
Q Consensus 242 ~~v~~~~~~~~w~~i~t~~d~~~a~~~~l~ 271 (379)
..+......|+|.|.||++++++|+++.+.
T Consensus 208 ~~~~~~~~~G~WlDtGt~~slleA~~~i~~ 237 (286)
T COG1209 208 YLVVAILIRGWWLDTGTPESLLEANNFVRT 237 (286)
T ss_pred cEEEEEEccceEEecCChhhHHHHHHHHHH
Confidence 567777788899999999999999988765
No 14
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=9.6e-40 Score=298.45 Aligned_cols=229 Identities=23% Similarity=0.374 Sum_probs=181.6
Q ss_pred ceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccchHHHHHHHHhhcccCCccEE
Q 016989 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVR 81 (379)
Q Consensus 8 ~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~~~i~~~l~~~~~~~~~~i~ 81 (379)
.+.+|||||| +||||++ .+||-|.|++||||++|+|+.+.. ++|+++..+ .+++.+... .++.
T Consensus 2 ~~~~vILAAG--kGTRMkS---~lPKVLH~vaGkpMl~hVi~~a~~l~~~~i~vVvGh~ae-~V~~~~~~~-----~~v~ 70 (460)
T COG1207 2 SLSAVILAAG--KGTRMKS---DLPKVLHPVAGKPMLEHVIDAARALGPDDIVVVVGHGAE-QVREALAER-----DDVE 70 (460)
T ss_pred CceEEEEecC--CCccccC---CCcccchhccCccHHHHHHHHHhhcCcceEEEEEcCCHH-HHHHHhccc-----cCce
Confidence 4789999999 9999999 999999999999999999999986 556666555 477666531 1577
Q ss_pred EecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeC
Q 016989 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADP 159 (379)
Q Consensus 82 ~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~ 159 (379)
|+.|.+++||++|++++++++.++...++||++||+|+ ...|+++++.|...++.+++++... ++|..||.+..++
T Consensus 71 ~v~Q~eqlGTgHAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~--~dP~GYGRIvr~~ 148 (460)
T COG1207 71 FVLQEEQLGTGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAEL--DDPTGYGRIVRDG 148 (460)
T ss_pred EEEecccCChHHHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEc--CCCCCcceEEEcC
Confidence 88889999999999999999955444579999999999 5568999999998888899999887 5899999999985
Q ss_pred CCCcEEEeeecC----CCcccceeeeeEEEeCH-hhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccc
Q 016989 160 DTNELLHYTEKP----ETFVSDLINCGVYVFTP-DIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDI 234 (379)
Q Consensus 160 ~~~~v~~~~ekp----~~~~~~~~~~Giy~~~~-~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~ 234 (379)
+++|..|.|.- +......+|+|+|+|+. .++++|.+..+.+.++|| |||+.-++..
T Consensus 149 -~g~V~~IVE~KDA~~eek~I~eiNtGiy~f~~~~L~~~L~~l~nnNaqgEY--YLTDvI~i~~---------------- 209 (460)
T COG1207 149 -NGEVTAIVEEKDASEEEKQIKEINTGIYAFDGAALLRALPKLSNNNAQGEY--YLTDVIAIAR---------------- 209 (460)
T ss_pred -CCcEEEEEEcCCCCHHHhcCcEEeeeEEEEcHHHHHHHHHHhccccccCcE--eHHHHHHHHH----------------
Confidence 78999998842 23457789999999995 578999999888888888 6654333322
Q ss_pred cccccCCceEEEEEcccchh--hcCCccchhhcchHHHHh
Q 016989 235 LSPLAGKKQLYTYETMDFWE--QIKTPGMSLKCSGLYLAQ 272 (379)
Q Consensus 235 l~~l~~~~~v~~~~~~~~w~--~i~t~~d~~~a~~~~l~~ 272 (379)
.++.++.++...+++. -+++-..+-++.+.+..+
T Consensus 210 ----~~g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r 245 (460)
T COG1207 210 ----NEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRR 245 (460)
T ss_pred ----hCCCeEEEEecCchHHhcCcCcHHHHHHHHHHHHHH
Confidence 2457899998876654 445555555555655543
No 15
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=5.8e-39 Score=315.42 Aligned_cols=318 Identities=19% Similarity=0.292 Sum_probs=217.7
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEE
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVR 81 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~ 81 (379)
++++||||||| .|+||++ .+||+|+|++|+|||+|+++++.+ +++++.+..+.+.+++.+. ..+.
T Consensus 2 ~~~~avIlAaG--~g~Rl~~---~~pK~l~pi~g~pli~~~l~~l~~~gi~~iiiv~~~~~~~i~~~~~~~-----~~i~ 71 (459)
T PRK14355 2 NNLAAIILAAG--KGTRMKS---DLVKVMHPLAGRPMVSWPVAAAREAGAGRIVLVVGHQAEKVREHFAGD-----GDVS 71 (459)
T ss_pred CcceEEEEcCC--CCcccCC---CCCceeceeCCccHHHHHHHHHHhcCCCeEEEEECCCHHHHHHHhccC-----CceE
Confidence 35899999999 9999986 789999999999999999999986 5666555555688888642 1455
Q ss_pred EecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeC
Q 016989 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADP 159 (379)
Q Consensus 82 ~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~ 159 (379)
+..+...+|++++++.+++++++. .++|++++||.++ +.+++++++.|.+.+++++++..+. .++..|+.+..|+
T Consensus 72 ~~~~~~~~Gt~~al~~a~~~l~~~-~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~--~~~~~~g~v~~d~ 148 (459)
T PRK14355 72 FALQEEQLGTGHAVACAAPALDGF-SGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTARL--ENPFGYGRIVRDA 148 (459)
T ss_pred EEecCCCCCHHHHHHHHHHHhhcc-CCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEEEc--CCCCcCCEEEEcC
Confidence 656677889999999999998642 2479999999965 6789999999988887787777665 3567889888874
Q ss_pred CCCcEEEeeecCCCc----ccceeeeeEEEeCHhh-HHHhhccccccccchhhhhcchhhhhhhhccccccccccccccc
Q 016989 160 DTNELLHYTEKPETF----VSDLINCGVYVFTPDI-FNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDI 234 (379)
Q Consensus 160 ~~~~v~~~~ekp~~~----~~~~~~~Giy~~~~~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~ 234 (379)
+++|..+.|||... ..+++++|+|+|++++ ++.+.+..+....+++ + + .|+
T Consensus 149 -~g~v~~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~e~--------------------~--~-~d~ 204 (459)
T PRK14355 149 -DGRVLRIVEEKDATPEERSIREVNSGIYCVEAAFLFDAIGRLGNDNAQGEY--------------------Y--L-TDI 204 (459)
T ss_pred -CCCEEEEEEcCCCChhHhhccEEEEEEEEEeHHHHHHHHHHcCccccCCce--------------------e--H-HHH
Confidence 68999999876321 2478899999999986 5666544321111111 1 1 688
Q ss_pred cccccCC-ceEEEEEcccc--hhhcCCccchhhcchHHHHhhhh-c-CCccccCCCCCCC-eEEecCeEECCCcEECCCC
Q 016989 235 LSPLAGK-KQLYTYETMDF--WEQIKTPGMSLKCSGLYLAQFRL-T-SPNLLASGDGTKN-ATIIGDVYVHPSAKIHPTA 308 (379)
Q Consensus 235 l~~l~~~-~~v~~~~~~~~--w~~i~t~~d~~~a~~~~l~~~~~-~-~~~~~~~~~~~~~-~~i~~~~~i~~~~~i~~~~ 308 (379)
++.++++ .++++|+++++ |.++++|++|++++++++.+... . ..+.. ..+++ ..|++++.|++++.|+++|
T Consensus 205 i~~l~~~g~~v~~~~~~~~~~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~---~i~~~~~~i~~~v~ig~~~~I~~~~ 281 (459)
T PRK14355 205 VAMAAAEGLRCLAFPVADPDEIMGVNDRAQLAEAARVLRRRINRELMLAGVT---LIDPETTYIDRGVVIGRDTTIYPGV 281 (459)
T ss_pred HHHHHHCCCeEEEEEcCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCE---EECCCceEECCCeEEcCCCEEeCCc
Confidence 8888765 58999999887 88999999999998766654221 0 00000 01121 2333444444444444332
Q ss_pred ------------C--CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEECCCceecccc
Q 016989 309 ------------K--ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTLNVSV 373 (379)
Q Consensus 309 ------------~--~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~~~~~i~~~~ 373 (379)
. .++.|.+|+||++|.|+++|.|.+ |+|+++|.||+++++. ++.|++++.||.++
T Consensus 282 ~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~----------~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~ 351 (459)
T PRK14355 282 CISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLED----------SVVGDDVAIGPMAHLRPGTELSAHVKIGNFV 351 (459)
T ss_pred EEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeC----------CEECCCCEECCCCEECCCCEeCCCCEECCCc
Confidence 2 334444555555555555555543 6666666666666664 66666666666665
Q ss_pred c
Q 016989 374 H 374 (379)
Q Consensus 374 ~ 374 (379)
.
T Consensus 352 ~ 352 (459)
T PRK14355 352 E 352 (459)
T ss_pred c
Confidence 3
No 16
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.7e-37 Score=305.45 Aligned_cols=320 Identities=20% Similarity=0.266 Sum_probs=217.2
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEE
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVR 81 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~ 81 (379)
++|+||||||| +|+||++ .+||+|+|++|+|||+|++++|.+ ++|++.+..+.+++++.. ..+.
T Consensus 6 ~~~~avILAaG--~gtRl~~---~~pK~llpi~gkpli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~------~~i~ 74 (481)
T PRK14358 6 RPLDVVILAAG--QGTRMKS---ALPKVLHPVAGRPMVAWAVKAARDLGARKIVVVTGHGAEQVEAALQG------SGVA 74 (481)
T ss_pred CCceEEEECCC--CCCcCCC---CCCceecEECCeeHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcc------CCcE
Confidence 57899999999 9999998 689999999999999999999975 666655555567777752 2355
Q ss_pred EecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeC
Q 016989 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADP 159 (379)
Q Consensus 82 ~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~ 159 (379)
++.++...|++++++.+++++... .++|++++||.++ +.+++++++.|.++++++|+++.+.+ ++..||.+..++
T Consensus 75 ~v~~~~~~Gt~~al~~~~~~l~~~-~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~~~--~~~~yG~v~~d~ 151 (481)
T PRK14358 75 FARQEQQLGTGDAFLSGASALTEG-DADILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGELP--DATGYGRIVRGA 151 (481)
T ss_pred EecCCCcCCcHHHHHHHHHHhhCC-CCcEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEEEcC--CCCCceEEEECC
Confidence 666677889999999999888532 1359999999976 67799999999988888888887764 567899999984
Q ss_pred CCCcEEEeeecCCCc----ccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhcccccccccccccccc
Q 016989 160 DTNELLHYTEKPETF----VSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDIL 235 (379)
Q Consensus 160 ~~~~v~~~~ekp~~~----~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l 235 (379)
+++|..|.|||... ..+++++|+|+|++++++.+....+....+++ . | .|++
T Consensus 152 -~g~v~~~~Ek~~~~~~~~~~~~~n~Giyi~~~~~~~~~~~i~~~~~~ge~---------------------~-l-~d~i 207 (481)
T PRK14358 152 -DGAVERIVEQKDATDAEKAIGEFNSGVYVFDARAPELARRIGNDNKAGEY---------------------Y-L-TDLL 207 (481)
T ss_pred -CCCEEEEEECCCCChhHhhCCeEEEEEEEEchHHHHHHHhcCCCccCCeE---------------------E-H-HHHH
Confidence 68999999997633 24578999999997665555433221111111 1 2 5788
Q ss_pred ccccCC-ceEEEEEcccchhhcCCccchhhcch--HHHHhhhh--cC-------Ccc-ccCCC--CCCCeEEecCeEECC
Q 016989 236 SPLAGK-KQLYTYETMDFWEQIKTPGMSLKCSG--LYLAQFRL--TS-------PNL-LASGD--GTKNATIIGDVYVHP 300 (379)
Q Consensus 236 ~~l~~~-~~v~~~~~~~~w~~i~t~~d~~~a~~--~~l~~~~~--~~-------~~~-~~~~~--~~~~~~i~~~~~i~~ 300 (379)
+.+.++ .++++|.+.++|..++...++..++. ++..+... .. |.. ...+. +..++.|.++++|..
T Consensus 208 ~~~~~~g~~i~~~~~~~~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~I~~~~~I~~ 287 (481)
T PRK14358 208 GLYRAGGAQVRAFKLSDPDEVLGANDRAGLAQLEATLRRRINEAHMKAGVTLQDPGTILIEDTVTLGRDVTIEPGVLLRG 287 (481)
T ss_pred HHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCCcEECCCCEEeCCcEEeC
Confidence 887765 57999999989988888776644432 22222210 00 100 00000 112233333333333
Q ss_pred CcEECCCCC--CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEECCCceeccccc
Q 016989 301 SAKIHPTAK--ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTLNVSVH 374 (379)
Q Consensus 301 ~~~i~~~~~--~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~~~~~i~~~~~ 374 (379)
++.|+++|. ++|.|++|+||++|.|+++++|.+ ++||++|.|++++.|. +++|++++.|++++.
T Consensus 288 ~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~----------~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~ 354 (481)
T PRK14358 288 QTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEG----------AEVGAGSDVGPFARLRPGTVLGEGVHIGNFVE 354 (481)
T ss_pred CcEECCCCEECCCCEEeeeEECCCCEEeecceecC----------CeEeCceEECCccEEcCCcEECCCCEECCCEE
Confidence 333333333 555667777777777777777755 6777777777777664 666666666666543
No 17
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2.4e-37 Score=305.48 Aligned_cols=324 Identities=18% Similarity=0.244 Sum_probs=212.8
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEE
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVR 81 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~ 81 (379)
..+.||||||| .|+||++ .+||+|+|++|+|||+|+++.+.+ +++++.+..+.+.+++... ...+.
T Consensus 3 ~~~~avILAaG--~gtRm~~---~~pK~llpi~gkpli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~----~~~~~ 73 (482)
T PRK14352 3 RPTAVIVLAAG--AGTRMRS---DTPKVLHTLAGRSMLGHVLHAAAGLAPQHLVVVVGHDRERVAPAVAEL----APEVD 73 (482)
T ss_pred CCceEEEEcCC--CCCcCCC---CCCceeceeCCccHHHHHHHHHHhcCCCcEEEEECCCHHHHHHHhhcc----CCccE
Confidence 35689999999 9999998 789999999999999999999986 5555444445577777642 12344
Q ss_pred EecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeC
Q 016989 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADP 159 (379)
Q Consensus 82 ~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~ 159 (379)
++.++...|++++++.+++++..+..+++++++||.++ ..++.++++.|.+.+++++++..+. .++..|+.+..++
T Consensus 74 ~~~~~~~~Gt~~si~~al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~~~--~~p~~yg~~~~~~ 151 (482)
T PRK14352 74 IAVQDEQPGTGHAVQCALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTTTL--DDPTGYGRILRDQ 151 (482)
T ss_pred EEeCCCCCCcHHHHHHHHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEeec--CCCCCCCEEEECC
Confidence 55667788999999999998864333579999999975 5779999999988777777776655 4678899888764
Q ss_pred CCCcEEEeeecCCCcc----cceeeeeEEEeCHhhHH-Hhhccccccccchhhhhcchhhhhhhhccccccccccccccc
Q 016989 160 DTNELLHYTEKPETFV----SDLINCGVYVFTPDIFN-AIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDI 234 (379)
Q Consensus 160 ~~~~v~~~~ekp~~~~----~~~~~~Giy~~~~~~l~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~ 234 (379)
+++|..+.|||.... ..++++|+|+|++++|. .+.+....+.+++ +. + .|+
T Consensus 152 -~g~V~~~~EKp~~~~~~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e---------------------~~-l-~d~ 207 (482)
T PRK14352 152 -DGEVTAIVEQKDATPSQRAIREVNSGVYAFDAAVLRSALARLSSDNAQGE---------------------LY-L-TDV 207 (482)
T ss_pred -CCCEEEEEECCCCCHHHhhcceEEEEEEEEEHHHHHHHHHhhCccccCCc---------------------Ee-H-HHH
Confidence 689999999987432 45789999999999874 4443322111111 11 1 688
Q ss_pred cccccCC-ceEEEEEcccchhhcCCccch------hhcchHHHHhhhhcCCccccCCCCCCCeEEecCeEECCCcEECCC
Q 016989 235 LSPLAGK-KQLYTYETMDFWEQIKTPGMS------LKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDVYVHPSAKIHPT 307 (379)
Q Consensus 235 l~~l~~~-~~v~~~~~~~~w~~i~t~~d~------~~a~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~ 307 (379)
++.+++. .++++|+++++|.++++++++ ..+++.++..+......+. .+..+.|.++++||++++|+++
T Consensus 208 i~~l~~~g~~V~~~~~~g~w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~----~~~~~~i~~~v~ig~~~~I~~~ 283 (482)
T PRK14352 208 LAIAREAGHRVGAHHADDSAEVAGVNDRVQLAALGAELNRRIVEAWMRAGVTIV----DPATTWIDVDVTIGRDVVIHPG 283 (482)
T ss_pred HHHHHHCCCeEEEEecCCcceEEcCCCHHHHHHHHHHHHHHHHHHHHhCCCEEE----CCCeEEEeCCEEECCCcEEeCC
Confidence 8888765 589999999999999999887 3333333333322111110 0123455555555555555544
Q ss_pred CCCCcEEeceEECCCCEECCCcEEeeccc------ccccccceEECCCcEECCCcEEe-ccEECCCceeccc
Q 016989 308 AKENAVVTNAIVGWKSSIGRWSRVQAEGD------FNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTLNVS 372 (379)
Q Consensus 308 ~~~~~~i~~s~ig~~~~ig~~~~i~~~~~------~~~~~~~sii~~~~~i~~~~~i~-~~ii~~~~~i~~~ 372 (379)
+. ...+++||++|.|+++|.|.+..+ ..+.+++|+|+++|.||+++.+. +++|++++.|+..
T Consensus 284 ~~---i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~ 352 (482)
T PRK14352 284 TQ---LLGRTTIGEDAVVGPDTTLTDVTVGEGASVVRTHGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAF 352 (482)
T ss_pred cE---EeecCEECCCCEECCCCEEecCEECCCCEEeeeeeecCEEcCCCEECCCeEecCCcEEcCCCEECCc
Confidence 43 222444444444444444433111 01122335555555565555553 5555555555443
No 18
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-38 Score=283.64 Aligned_cols=352 Identities=18% Similarity=0.283 Sum_probs=227.4
Q ss_pred CCceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEccc-chHHHHHHHHhhcccCCcc
Q 016989 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFY-EEREFALYVSSISNELRIP 79 (379)
Q Consensus 6 ~~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~-~~~~i~~~l~~~~~~~~~~ 79 (379)
+..++||++||| -||||..++...|||||||+|+|||+|++++|.+ ++|++.. ....++..+.... .+..+
T Consensus 7 ~~efqavV~a~~--ggt~~p~~~~~~pKaLLPIgn~PMi~YpL~~L~~~gfteiiVv~~e~e~~~i~~al~~~~-~l~~~ 83 (433)
T KOG1462|consen 7 MSEFQAVVLAGG--GGTRMPEVTSRLPKALLPIGNKPMILYPLNSLEQAGFTEIIVVVNEDEKLDIESALGSNI-DLKKR 83 (433)
T ss_pred hHHhhhheeecC--CceechhhhhhcchhhcccCCcceeeeehhHHHhcCCeEEEEEecHHHHHHHHHHHhcCC-ccccc
Confidence 367999999999 9999999999999999999999999999999987 5665554 3346777775421 12222
Q ss_pred ---EEEec-CCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeC---------C
Q 016989 80 ---VRYLR-EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVS---------A 146 (379)
Q Consensus 80 ---i~~~~-~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~---------~ 146 (379)
+.+-. .+...||+++|+.....++. ++|++++||.+.+.++..++++++..++...+++.... .
T Consensus 84 ~~~v~ip~~~~~d~gtadsLr~Iy~kikS---~DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli~~~~s~~~~pgqk~ 160 (433)
T KOG1462|consen 84 PDYVEIPTDDNSDFGTADSLRYIYSKIKS---EDFLVLSCDFVTDVPLQPLVDKFRATDASLAMLIGNALSEVPIPGQKG 160 (433)
T ss_pred ccEEEeecccccccCCHHHHhhhhhhhcc---CCEEEEecccccCCCcHHHHHHHhccChhHhHHhccccccccccCccc
Confidence 22211 12367999999999998876 25999999999999999999999887766555544321 0
Q ss_pred CCCCceeEEEEeCCCCcEEEeeec-----------------CC-CcccceeeeeEEEeCHhhHHHhhccc-cccccchhh
Q 016989 147 ESASQFGELVADPDTNELLHYTEK-----------------PE-TFVSDLINCGVYVFTPDIFNAIQGVS-SQRKDRENL 207 (379)
Q Consensus 147 ~~~~~~g~v~~d~~~~~v~~~~ek-----------------p~-~~~~~~~~~Giy~~~~~~l~~l~~~~-~~~~~~~~~ 207 (379)
...+.+.++..+++++|+...... |. ...++|.++++|+|+.+++++|++.. ....+++++
T Consensus 161 k~k~~~d~igi~e~t~rl~y~~~~~d~~~~l~i~~slL~~~prltl~t~L~dahiY~~k~~v~d~l~~~~sisSfk~~f~ 240 (433)
T KOG1462|consen 161 KKKQARDVIGINEDTERLAYSSDSADEEEPLVIRKSLLWNHPRLTLTTKLVDAHIYVFKHWVIDLLSEKESISSFKADFL 240 (433)
T ss_pred ccccccceeeeccccceeEEeecCCcCCCceehhhhhhhcCCceEEeccccceeeeeeHHHHHHHHhcCCcceeeccccc
Confidence 112233444455445565433221 22 23588999999999999999998765 445788889
Q ss_pred hhcchhhhhhhhc-ccccccccccccccccccc-----CCceEEEEEcc--cchhhcCCccchhhcchHHHHhhhhcCCc
Q 016989 208 RRVSSFEALQSAT-RNLTTDFVRLDQDILSPLA-----GKKQLYTYETM--DFWEQIKTPGMSLKCSGLYLAQFRLTSPN 279 (379)
Q Consensus 208 ~~~~~~~~~~~~~-~~~~~~~~~l~~d~l~~l~-----~~~~v~~~~~~--~~w~~i~t~~d~~~a~~~~l~~~~~~~~~ 279 (379)
||++..|.-+... +.....+.. .+.+.+... ++.++++|... +-+..++|...|+++|+ -.-+..+++.
T Consensus 241 P~lvkkQ~q~~~~~~~~~~~~l~-t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~y~eiN~--~k~~~~l~~e 317 (433)
T KOG1462|consen 241 PYLVKKQFQKNPPLKKNETSILP-TPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLSYMEINR--DKKLKKLCSE 317 (433)
T ss_pred chhhhhhhhcCCCcccccccccC-CccccCcccccCcccceeeeEEEccCccceEEecchHHHHhhhH--HHHHHHhccc
Confidence 9998766522110 000000000 011111111 13456666653 45678999999999995 1123333332
Q ss_pred cc-cCCCCCCCeEEecCeEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeeccc-------ccccccceEECCCcE
Q 016989 280 LL-ASGDGTKNATIIGDVYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGD-------FNAKLGITILGEAVG 351 (379)
Q Consensus 280 ~~-~~~~~~~~~~i~~~~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~-------~~~~~~~sii~~~~~ 351 (379)
-. ........+.++-++.|++++.|+ +++.|..|+||+||.||+.++|.+..+ .++.+++||||.+++
T Consensus 318 ~~~~k~~~~~~~l~g~d~iv~~~t~i~----~~s~ik~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~IensIIg~gA~ 393 (433)
T KOG1462|consen 318 AKFVKNYVKKVALVGADSIVGDNTQIG----ENSNIKRSVIGSNCDIGERVKVANSILMDNVVVGDGVNIENSIIGMGAQ 393 (433)
T ss_pred cccccchhhheeccchhhccCCCceec----ccceeeeeeecCCccccCCcEEEeeEeecCcEecCCcceecceecccce
Confidence 21 122222346666667777777777 456788888888888888888877332 133444566666666
Q ss_pred ECCCcEEeccEECCCceec
Q 016989 352 VEDEVVVTNSIVLPNKTLN 370 (379)
Q Consensus 352 i~~~~~i~~~ii~~~~~i~ 370 (379)
||+||.++||+|+++-+|+
T Consensus 394 Ig~gs~L~nC~Ig~~yvVe 412 (433)
T KOG1462|consen 394 IGSGSKLKNCIIGPGYVVE 412 (433)
T ss_pred ecCCCeeeeeEecCCcEEc
Confidence 6666666666666666666
No 19
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2.5e-37 Score=304.09 Aligned_cols=319 Identities=16% Similarity=0.238 Sum_probs=211.4
Q ss_pred CCCceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCcc
Q 016989 5 EDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIP 79 (379)
Q Consensus 5 ~~~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~ 79 (379)
|+..+.||||||| +|+||++ .+||+|+|++|+|||+|+++.|.. +++++.+..+.+.+++.. ..
T Consensus 2 ~~~~~~aiILAaG--~gtR~~~---~~pK~l~~i~gkpli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~------~~ 70 (456)
T PRK14356 2 MASTTGALILAAG--KGTRMHS---DKPKVLQTLLGEPMLRFVYRALRPLFGDNVWTVVGHRADMVRAAFPD------ED 70 (456)
T ss_pred CCcceeEEEEcCC--CCccCCC---CCCceecccCCCcHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhccc------cC
Confidence 6667899999999 9999985 789999999999999999999976 555554444456666542 23
Q ss_pred EEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEE
Q 016989 80 VRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVA 157 (379)
Q Consensus 80 i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~ 157 (379)
+.++.++...|++++++.++++++....+++++++||+++ ..+++.+++.|. +++++++..+.+ ++..||.+..
T Consensus 71 ~~~v~~~~~~Gt~~al~~a~~~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~~~~--~~~~~g~v~~ 146 (456)
T PRK14356 71 ARFVLQEQQLGTGHALQCAWPSLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTLTLP--DPGAYGRVVR 146 (456)
T ss_pred ceEEEcCCCCCcHHHHHHHHHHHhhcCCCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEEEcC--CCCCceEEEE
Confidence 4455556678999999999998864334579999999976 567899998876 556777777663 6778998766
Q ss_pred eCCCCcEEEeeecCCC------cccceeeeeEEEeCHhhHHHh-hccccccccchhhhhcchhhhhhhhccccccccccc
Q 016989 158 DPDTNELLHYTEKPET------FVSDLINCGVYVFTPDIFNAI-QGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRL 230 (379)
Q Consensus 158 d~~~~~v~~~~ekp~~------~~~~~~~~Giy~~~~~~l~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 230 (379)
+ +++|..+.|||.. +..++.++|+|+|++++++.+ +........++ ++ +
T Consensus 147 ~--~g~V~~~~ek~~~~~~~~~~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~~~e---------------------~~-l 202 (456)
T PRK14356 147 R--NGHVAAIVEAKDYDEALHGPETGEVNAGIYYLRLDAVESLLPRLTNANKSGE---------------------YY-I 202 (456)
T ss_pred c--CCeEEEEEECCCCChHHhhhhcCeEEEEEEEEEHHHHHHHHHhccCcccCCc---------------------EE-H
Confidence 3 6899999998652 235688999999999987644 32221111111 11 1
Q ss_pred cccccccccC-CceEEEEEccc--chhhcCCccchhhcchHHHHhhhh--cCCccccC----------CCCCCCeEEecC
Q 016989 231 DQDILSPLAG-KKQLYTYETMD--FWEQIKTPGMSLKCSGLYLAQFRL--TSPNLLAS----------GDGTKNATIIGD 295 (379)
Q Consensus 231 ~~d~l~~l~~-~~~v~~~~~~~--~w~~i~t~~d~~~a~~~~l~~~~~--~~~~~~~~----------~~~~~~~~i~~~ 295 (379)
.++++.+.+ +.++.++.+.+ .|.+++||++|.++++++..+... ..++.... ....+++.|.++
T Consensus 203 -td~i~~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~~~~~~~~~~~~i~~~~~~~i~~~~~i~~~~~i~~~ 281 (456)
T PRK14356 203 -TDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAELVRSEELLRARIVEKHLESGVLIHAPESVRIGPRATIEPGAEIYGP 281 (456)
T ss_pred -HHHHHHHHHCCCeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEECCCcEECCCCEEeCC
Confidence 577777654 46899999866 469999999999998777654321 11111000 011122333222
Q ss_pred eEECCCcEECCCCC--CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEECCCceeccc
Q 016989 296 VYVHPSAKIHPTAK--ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTLNVS 372 (379)
Q Consensus 296 ~~i~~~~~i~~~~~--~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~~~~~i~~~ 372 (379)
+.|+.++.|+++|. ++|.|.+|+||++|.|+++|+|.+ |+||++|.||+++.|. +|+|++++.|+++
T Consensus 282 ~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~----------~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~ 351 (456)
T PRK14356 282 CEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEG----------AEVGDGCSVGPYARLRPGAVLEEGARVGNF 351 (456)
T ss_pred cEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcc----------cceecccEECCceEECCCCEECCCCEecCC
Confidence 22222223333332 445566666666666666666654 6666666666666664 5666666666655
Q ss_pred c
Q 016989 373 V 373 (379)
Q Consensus 373 ~ 373 (379)
+
T Consensus 352 ~ 352 (456)
T PRK14356 352 V 352 (456)
T ss_pred c
Confidence 4
No 20
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=100.00 E-value=3.2e-37 Score=280.58 Aligned_cols=250 Identities=54% Similarity=1.012 Sum_probs=197.8
Q ss_pred EEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccchHHHHHHHHhhcccCCccEEEec
Q 016989 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVRYLR 84 (379)
Q Consensus 11 aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~ 84 (379)
|||||||...|+||+|+|..+||||+|++|+|||+|+++++.+ |+|++++..+.+.+|+++.....++.+.+..
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~i~~~~ 80 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQQEFNVPIRYLQ 80 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeECCeeHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhcccccCceEEEec
Confidence 6899999112999999999999999999999999999999974 6677766667799999865445667777777
Q ss_pred CCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCCCcE
Q 016989 85 EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNEL 164 (379)
Q Consensus 85 ~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~~v 164 (379)
+....||+++++.+++++....+++|++++||++++.|++++++.|+++++++|+++.+.+..++..||.+..++++++|
T Consensus 81 ~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~~~~~~~yg~v~~d~~~g~v 160 (257)
T cd06428 81 EYKPLGTAGGLYHFRDQILAGNPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEASREQASNYGCIVEDPSTGEV 160 (257)
T ss_pred CCccCCcHHHHHHHHHHhhccCCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEccccccccccEEEEeCCCCeE
Confidence 77789999999999999854323579999999999999999999999999999999887654567899998887336899
Q ss_pred EEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccccCCceE
Q 016989 165 LHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQL 244 (379)
Q Consensus 165 ~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~v 244 (379)
..+.|||....+.++++|+|+|++++|+.+.+..+.+. +|+ ...+.... +....+..+..|+++.++++.++
T Consensus 161 ~~~~Ekp~~~~~~~~~~Giyi~~~~~~~~i~~~~~~~~-~e~-----~~~~~~~~--~~~~~~~~~~~d~~~~l~~~~~v 232 (257)
T cd06428 161 LHYVEKPETFVSDLINCGVYLFSPEIFDTIKKAFQSRQ-QEA-----QLGDDNNR--EGRAEVIRLEQDVLTPLAGSGKL 232 (257)
T ss_pred EEEEeCCCCcccceEEEEEEEECHHHHHHHhhhccccc-ccc-----cccccccc--ccccceeeehhhhhhHHhccCCE
Confidence 99999998777889999999999999988876443222 111 00000000 00012233447999999888899
Q ss_pred EEEEcccchhhcCCccchhhcchH
Q 016989 245 YTYETMDFWEQIKTPGMSLKCSGL 268 (379)
Q Consensus 245 ~~~~~~~~w~~i~t~~d~~~a~~~ 268 (379)
++|+++|+|.+++||++|++|+++
T Consensus 233 ~~~~~~g~w~dig~~~~~~~a~~~ 256 (257)
T cd06428 233 YVYKTDDFWSQIKTAGSAIYANRL 256 (257)
T ss_pred EEecCCCeeecCCCHHHHHhHhhc
Confidence 999999999999999999999865
No 21
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2.2e-36 Score=296.60 Aligned_cols=314 Identities=20% Similarity=0.272 Sum_probs=215.3
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEE
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVR 81 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~ 81 (379)
+++.||||||| .|+||++ .+||+|+|++|+|||+|+++.+.. ++|++.+..+.+.+++... +.++.
T Consensus 4 ~~~~aiILAaG--~gsR~~~---~~pK~ll~v~gkpli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~~----~~~~~ 74 (446)
T PRK14353 4 RTCLAIILAAG--EGTRMKS---SLPKVLHPVAGRPMLAHVLAAAASLGPSRVAVVVGPGAEAVAAAAAKI----APDAE 74 (446)
T ss_pred ccceEEEEcCC--CCCccCC---CCCcccCEECCchHHHHHHHHHHhCCCCcEEEEECCCHHHHHHHhhcc----CCCce
Confidence 56899999999 9999986 689999999999999999999975 6666665555677777542 22334
Q ss_pred EecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeC
Q 016989 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADP 159 (379)
Q Consensus 82 ~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~ 159 (379)
+..+....|++++++.+++++... .+++++++||.++ ..++..+++. .+.+++++++..+. .++..|+.+..+
T Consensus 75 ~~~~~~~~G~~~sl~~a~~~l~~~-~~~~lv~~~D~P~i~~~~l~~l~~~-~~~~~~~~i~~~~~--~~~~~~g~~~~~- 149 (446)
T PRK14353 75 IFVQKERLGTAHAVLAAREALAGG-YGDVLVLYGDTPLITAETLARLRER-LADGADVVVLGFRA--ADPTGYGRLIVK- 149 (446)
T ss_pred EEEcCCCCCcHHHHHHHHHHHhcc-CCCEEEEeCCcccCCHHHHHHHHHh-HhcCCcEEEEEEEe--CCCCcceEEEEC-
Confidence 444566789999999999888521 2469999999966 5568888874 44566777777665 356788877764
Q ss_pred CCCcEEEeeecCCCc----ccceeeeeEEEeCHhhH-HHhhccccccccchhhhhcchhhhhhhhccccccccccccccc
Q 016989 160 DTNELLHYTEKPETF----VSDLINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDI 234 (379)
Q Consensus 160 ~~~~v~~~~ekp~~~----~~~~~~~Giy~~~~~~l-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~ 234 (379)
+++|..+.|||... ...+.++|+|+|+++.| +.+++....... ..++ + .++
T Consensus 150 -~g~v~~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~---------------------~~~~-~-~d~ 205 (446)
T PRK14353 150 -GGRLVAIVEEKDASDEERAITLCNSGVMAADGADALALLDRVGNDNAK---------------------GEYY-L-TDI 205 (446)
T ss_pred -CCeEEEEEECCCCChHHhhceEEEEEEEEEEHHHHHHHHHhhcccCCC---------------------CcEe-H-HHH
Confidence 67999999997532 23678999999998654 665543211100 1111 1 567
Q ss_pred cccccC-CceEEEEEcc-cchhhcCCccchhhcchHHHHhhh---hc-CCcccc--------CCCCCCCeEEecCeEECC
Q 016989 235 LSPLAG-KKQLYTYETM-DFWEQIKTPGMSLKCSGLYLAQFR---LT-SPNLLA--------SGDGTKNATIIGDVYVHP 300 (379)
Q Consensus 235 l~~l~~-~~~v~~~~~~-~~w~~i~t~~d~~~a~~~~l~~~~---~~-~~~~~~--------~~~~~~~~~i~~~~~i~~ 300 (379)
++.+++ +.+++++..+ +.|.+++||+||.+|+.++..+.. .+ ...+.. ...+.+++.|++++.|++
T Consensus 206 ~~~l~~~g~~v~~~~~~~~~~~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~i~~~~~I~~ 285 (446)
T PRK14353 206 VAIARAEGLRVAVVEAPEDEVRGINSRAELAEAEAVWQARRRRAAMLAGVTLIAPETVFFSYDTVIGRDVVIEPNVVFGP 285 (446)
T ss_pred HHHHHHCCCeEEEEecChhhcccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCeEEECCceEECCCCEECCCCEECC
Confidence 777764 4679999986 469999999999999877755421 01 011110 011234455555555666
Q ss_pred CcEECCCCC--CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCc
Q 016989 301 SAKIHPTAK--ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNK 367 (379)
Q Consensus 301 ~~~i~~~~~--~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~ 367 (379)
++.|+++|. .++.|.+|+||++|+||+++.|..+ |+||++|.||++|.+.+++|++++
T Consensus 286 ~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~---------~~ig~~~~Ig~~~~i~~~~i~~~~ 345 (446)
T PRK14353 286 GVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPG---------AELGEGAKVGNFVEVKNAKLGEGA 345 (446)
T ss_pred CCEECCCCEECCCeEEeccEECCCcEECCCeEEecc---------ceecCCeEEcCceEEeceEECCCC
Confidence 666665555 5566777889999999998888755 666666666666655544444433
No 22
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.9e-36 Score=295.85 Aligned_cols=324 Identities=15% Similarity=0.205 Sum_probs=217.8
Q ss_pred ceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc----EEEEcccchHHHHHHHHhhcccCCccEEEe
Q 016989 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (379)
Q Consensus 8 ~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~ 83 (379)
.++||||||| .|+||++ .+||+|+|++|+|||+|+++.+.+ ++|+..+..+.+++++.+.. .++++.+.
T Consensus 2 ~~~aiIlAaG--~GtRl~~---~~pK~Llpi~gkPli~~~i~~l~~~~~~i~Ivv~~~~~~i~~~~~~~~--~~v~~~~~ 74 (430)
T PRK14359 2 KLSIIILAAG--KGTRMKS---SLPKVLHTICGKPMLFYILKEAFAISDDVHVVLHHQKERIKEAVLEYF--PGVIFHTQ 74 (430)
T ss_pred CccEEEEcCC--CCccCCC---CCCceeCEECCccHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhcC--CceEEEEe
Confidence 4789999999 9999998 899999999999999999999975 55555556666888886521 13444333
Q ss_pred cCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCCCc
Q 016989 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNE 163 (379)
Q Consensus 84 ~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~~ 163 (379)
.+....|++++++.+.. ..++|++++||.++. ..+.++.+.+.++++++++.+.. ++..|+.+..+ +++
T Consensus 75 ~~~~~~gt~~al~~~~~-----~~d~vlv~~gD~p~~--~~~~l~~l~~~~~~~~v~~~~~~--~~~~~g~v~~d--~g~ 143 (430)
T PRK14359 75 DLENYPGTGGALMGIEP-----KHERVLILNGDMPLV--EKDELEKLLENDADIVMSVFHLA--DPKGYGRVVIE--NGQ 143 (430)
T ss_pred cCccCCCcHHHHhhccc-----CCCeEEEEECCccCC--CHHHHHHHHhCCCCEEEEEEEcC--CCccCcEEEEc--CCe
Confidence 33456799999987422 135799999999762 23445555556677788877763 56778887765 579
Q ss_pred EEEeeecCCCc----ccceeeeeEEEeCHhhHHHhhccc-cccccchhhhhcchhhhhhhhccccccccccccccccccc
Q 016989 164 LLHYTEKPETF----VSDLINCGVYVFTPDIFNAIQGVS-SQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPL 238 (379)
Q Consensus 164 v~~~~ekp~~~----~~~~~~~Giy~~~~~~l~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l 238 (379)
|..+.|+|... ...+.++|+|+|++++|+.+.+.. ....+.++ +. .|+++.+
T Consensus 144 v~~i~e~~~~~~~~~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e~--------------------~l---~d~i~~l 200 (430)
T PRK14359 144 VKKIVEQKDANEEELKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKEY--------------------YL---TDIIALA 200 (430)
T ss_pred EEEEEECCCCCcccccceEEEeEEEEEEHHHHHHHHHhcCcccccCce--------------------eh---hhHHHHH
Confidence 99999887422 246789999999999987663321 11111111 11 5777777
Q ss_pred cCC-ceEEEEEcc-cchhhcCCccchhhcchHHHHhhhhc--CCccc-cC---CCCCCCeEEecCeEECCCcEECCCCC-
Q 016989 239 AGK-KQLYTYETM-DFWEQIKTPGMSLKCSGLYLAQFRLT--SPNLL-AS---GDGTKNATIIGDVYVHPSAKIHPTAK- 309 (379)
Q Consensus 239 ~~~-~~v~~~~~~-~~w~~i~t~~d~~~a~~~~l~~~~~~--~~~~~-~~---~~~~~~~~i~~~~~i~~~~~i~~~~~- 309 (379)
++. .++.++..+ ++|.++++|+||.++++++..+.... ..+.. .. ...++++.|.+++.||+++.|+++|.
T Consensus 201 ~~~g~~v~~~~~~~~~w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~~~ig~~~~I~~~~~i 280 (430)
T PRK14359 201 IEKGETIKAVFVDEENFMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEGECELEEGVRILGKSKI 280 (430)
T ss_pred HHcCCeEEEEEcCCCEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcCceEECCCCEECCCeEE
Confidence 654 789999986 58999999999999987776553321 11100 00 01245666667777777777766553
Q ss_pred -----------CCcEEeceEECCCCEECCCcEEeeccc-ccccccceEECCCcEECCCcEEeccEECCCceecccc
Q 016989 310 -----------ENAVVTNAIVGWKSSIGRWSRVQAEGD-FNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSV 373 (379)
Q Consensus 310 -----------~~~~i~~s~ig~~~~ig~~~~i~~~~~-~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~ 373 (379)
.++.+.+|+||++|.|+++++|.+..+ ..+++++++| ++|+||+++.|.+|+||+++.||.++
T Consensus 281 ~~~~i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~~-~~~~i~~~~~i~d~~Ig~~~~ig~~~ 355 (430)
T PRK14359 281 ENSHIKAHSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNFVETKNAKL-NGVKAGHLSYLGDCEIDEGTNIGAGT 355 (430)
T ss_pred EeeEECCCCEEeccEEeCCEECCCCEECCCcEEeccEEcCcEEEcccEe-ccccccccccccCCEECCCCEECCCc
Confidence 234445677777777777777754333 2445555555 55677777777777777777777764
No 23
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=100.00 E-value=5.4e-37 Score=282.05 Aligned_cols=232 Identities=19% Similarity=0.283 Sum_probs=185.2
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcc-------
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISN------- 74 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~------- 74 (379)
.+|+||||||| .||||+|+|..+||||+||+|||||+|+++.+.. |+|++++..+.+.+|+.....
T Consensus 2 ~~mkavILAaG--~GTRL~PlT~~~PKpLvpV~gkPiI~~vl~~l~~~Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~~ 79 (297)
T TIGR01105 2 TNLKAVIPVAG--LGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CceEEEEECCC--CCcccCcccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEecCChHHHHHHHhchHHHHHHHHH
Confidence 47899999999 9999999999999999999999999999999986 666666566668888854210
Q ss_pred --------------cCCccEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeec--------CChHHHHHHHHh
Q 016989 75 --------------ELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS--------FPLPEMLDAHRN 132 (379)
Q Consensus 75 --------------~~~~~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~--------~dl~~~l~~~~~ 132 (379)
.+++++.++.|++++||+++++.|.+++.+ ++|++++||++++ .++.++++.|.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~i~~~~q~~~lGtg~Av~~a~~~l~~---~~flvv~gD~l~~~~~~~~~~~~l~~li~~~~~ 156 (297)
T TIGR01105 80 RVKRQLLAEVQSICPPGVTIMNVRQAQPLGLGHSILCARPVVGD---NPFVVVLPDIIIDDATADPLRYNLAAMIARFNE 156 (297)
T ss_pred hcchhhhhhhhhcCCCCceEEEeeCCCcCchHHHHHHHHHHhCC---CCEEEEECCeeccccccccchhHHHHHHHHHHH
Confidence 245678888889999999999999999964 3599999999985 589999999987
Q ss_pred cCCceEEEEEEeCCCCCCceeEEEEeC---CCCc---EEEeeecCCCc---ccceeeeeEEEeCHhhHHHhhcccccccc
Q 016989 133 YGGMGTILVIKVSAESASQFGELVADP---DTNE---LLHYTEKPETF---VSDLINCGVYVFTPDIFNAIQGVSSQRKD 203 (379)
Q Consensus 133 ~~~~~ti~~~~~~~~~~~~~g~v~~d~---~~~~---v~~~~ekp~~~---~~~~~~~Giy~~~~~~l~~l~~~~~~~~~ 203 (379)
.++.+ +++...+ .++.+||.+..++ ++++ |..+.|||..+ .++++++|+|+|++++|+.+....+...
T Consensus 157 ~~~~~-~~~~~~~-~~~~~yGvv~~~~~~d~~g~v~~I~~~~EKP~~~~~~~s~~~~~GiYi~~~~i~~~l~~~~~~~~- 233 (297)
T TIGR01105 157 TGRSQ-VLAKRMP-GDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWAELERTEPGAW- 233 (297)
T ss_pred hCCcE-EEEEEcC-CCCccceEEEecccccCCCCeeeEeEEEECCCCcccCCcCEEEEEEEEECHHHHHHHhcCCCCCC-
Confidence 77655 4444433 3589999998841 2454 58889998643 4789999999999999999876543211
Q ss_pred chhhhhcchhhhhhhhccccccccccccccccccccCCceEEEEEcccchhhcCCccchhhcchHH
Q 016989 204 RENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLY 269 (379)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~ 269 (379)
+++ . | +|+++.++++.++++|.++|+|.|+|+|++|++|+..+
T Consensus 234 ge~---------------------~-l-td~i~~l~~~~~v~~~~~~g~w~DiG~p~~~~~a~~~~ 276 (297)
T TIGR01105 234 GRI---------------------Q-L-TDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKY 276 (297)
T ss_pred Cee---------------------e-H-HHHHHHHHhcCCEEEEEeccEEECCCCHHHHHHHHHHH
Confidence 111 1 1 68888888888999999999999999999999997443
No 24
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.2e-36 Score=298.95 Aligned_cols=325 Identities=20% Similarity=0.295 Sum_probs=208.0
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEE
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVR 81 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~ 81 (379)
+.|+||||||| .|+||++ .+||+|+|++|+|||+|+++.+.+ +++++.+..+.+++++.. .++.
T Consensus 4 ~~~~aiIlAaG--~gtRl~~---~~pK~l~~i~gkpli~~~i~~l~~~gi~~i~vv~~~~~~~i~~~~~~------~~~~ 72 (456)
T PRK09451 4 SAMSVVILAAG--KGTRMYS---DLPKVLHTLAGKPMVQHVIDAANELGAQHVHLVYGHGGDLLKQTLAD------EPLN 72 (456)
T ss_pred CCceEEEEcCC--CCCcCCC---CCChhcceeCChhHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhhcc------CCcE
Confidence 45899999999 9999995 789999999999999999999975 555555555567777753 1344
Q ss_pred EecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeC
Q 016989 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADP 159 (379)
Q Consensus 82 ~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~ 159 (379)
++.++...|++++++.+++++.++ +++++++||.++ +.++.++++.|.+.+ .++++.+. .++..||.+..+
T Consensus 73 ~i~~~~~~Gt~~al~~a~~~l~~~--~~vlV~~gD~P~i~~~~i~~l~~~~~~~~--~~i~~~~~--~~~~~yG~v~~~- 145 (456)
T PRK09451 73 WVLQAEQLGTGHAMQQAAPFFADD--EDILMLYGDVPLISVETLQRLRDAKPQGG--IGLLTVKL--DNPTGYGRITRE- 145 (456)
T ss_pred EEECCCCCCcHHHHHHHHHhhccC--CcEEEEeCCcccCCHHHHHHHHHHhhcCC--EEEEEEEc--CCCCCceEEEec-
Confidence 555667889999999999888532 469999999965 678999998886543 44555554 356789987543
Q ss_pred CCCcEEEeeecCCCc----ccceeeeeEEEeCHhhH-HHhhccccccccchhhhhcchhhhhhhhccccccccccccccc
Q 016989 160 DTNELLHYTEKPETF----VSDLINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDI 234 (379)
Q Consensus 160 ~~~~v~~~~ekp~~~----~~~~~~~Giy~~~~~~l-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~ 234 (379)
+++|.+|.|||... ..+++++|+|+|++++| +++.+.......++ .+ + .|+
T Consensus 146 -~g~V~~~~EKp~~~~~~~~~~~~~~GiYi~~~~~l~~~l~~~~~~~~~~e--------------------~~--l-~d~ 201 (456)
T PRK09451 146 -NGKVVGIVEQKDATDEQRQIQEINTGILVANGADLKRWLAKLTNNNAQGE--------------------YY--I-TDI 201 (456)
T ss_pred -CCeEEEEEECCCCChHHhhccEEEEEEEEEEHHHHHHHHHhcCCccccCc--------------------ee--H-HHH
Confidence 67999999998532 24689999999998876 45654332111111 11 1 688
Q ss_pred cccccCC-ceEEEEE------cccc--hhhcCCccchhhcch---HHHHhhhhcCCccc--c-------CCCCCCCeEEe
Q 016989 235 LSPLAGK-KQLYTYE------TMDF--WEQIKTPGMSLKCSG---LYLAQFRLTSPNLL--A-------SGDGTKNATII 293 (379)
Q Consensus 235 l~~l~~~-~~v~~~~------~~~~--w~~i~t~~d~~~a~~---~~l~~~~~~~~~~~--~-------~~~~~~~~~i~ 293 (379)
++.++++ .++.+|. +.|+ |.+++++++|++++. ++........|... . ...+.+++.|.
T Consensus 202 i~~~i~~g~~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ig~~~~I~~~~~i~ 281 (456)
T PRK09451 202 IALAHQEGREIVAVHPQRLSEVEGVNNRLQLARLERVYQAEQAEKLLLAGVMLRDPARFDLRGTLTHGRDVEIDTNVIIE 281 (456)
T ss_pred HHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCEEEECCcEEECCCCEEcCCeEEe
Confidence 8888765 6899986 4566 788999999999863 22222221222211 0 01223556666
Q ss_pred cCeEECCCcEECCCCC-------------CCcEEeceEECCCCEECCCcEEeeccc--------ccccccceEECCCcEE
Q 016989 294 GDVYVHPSAKIHPTAK-------------ENAVVTNAIVGWKSSIGRWSRVQAEGD--------FNAKLGITILGEAVGV 352 (379)
Q Consensus 294 ~~~~i~~~~~i~~~~~-------------~~~~i~~s~ig~~~~ig~~~~i~~~~~--------~~~~~~~sii~~~~~i 352 (379)
+++.||+++.|+++|. +++.+++|+||++|.||+++.|..+.+ ..+.+++|+||+++.+
T Consensus 282 ~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i~~~~i~~~~~~ 361 (456)
T PRK09451 282 GNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEMKKARLGKGSKA 361 (456)
T ss_pred cCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceeeeceeeCCCCcc
Confidence 6666666666665543 333333444444444444444443311 0122333444444444
Q ss_pred CCCcEEeccEECCCceecccc
Q 016989 353 EDEVVVTNSIVLPNKTLNVSV 373 (379)
Q Consensus 353 ~~~~~i~~~ii~~~~~i~~~~ 373 (379)
++.+.+.+|.||+++.||+++
T Consensus 362 ~~~~~~g~~~ig~~~~ig~~~ 382 (456)
T PRK09451 362 GHLTYLGDAEIGDNVNIGAGT 382 (456)
T ss_pred CccccccccEECCCCEEcCCe
Confidence 444444455555555555554
No 25
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=100.00 E-value=8e-37 Score=280.29 Aligned_cols=231 Identities=20% Similarity=0.342 Sum_probs=192.2
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EE-EEcccchHHHHHHHHhhcccCCccE
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IY-LVGFYEEREFALYVSSISNELRIPV 80 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----ii-v~~~~~~~~i~~~l~~~~~~~~~~i 80 (379)
++|+||||||| .||||+|+|..+||||+||+|||||+|+|+.+.. |+ |+++...+.+++|+++ ...+++++
T Consensus 2 ~~~kaIILAgG--~GtRL~PlT~~~pK~Llpv~gkPmI~~~l~~l~~aGi~~I~ii~~~~~~~~~~~~l~~-g~~~g~~i 78 (292)
T PRK15480 2 KTRKGIILAGG--SGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGD-GSQWGLNL 78 (292)
T ss_pred CceEEEEECCC--cccccCcccCCCCceEeEECCEEHHHHHHHHHHHCCCCEEEEEecCCchHHHHHHHcC-ccccCcee
Confidence 46999999999 9999999999999999999999999999999986 55 4455555568899976 35688899
Q ss_pred EEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee-cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeC
Q 016989 81 RYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADP 159 (379)
Q Consensus 81 ~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~-~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~ 159 (379)
.+..++.+.|++++++.+.+++.++ +++++.||.++ +.++.++++.|.+.++++|+++.++ .++++||++..|+
T Consensus 79 ~y~~q~~~~Gta~Al~~a~~~i~~~---~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~~~v--~~p~~yGvv~~d~ 153 (292)
T PRK15480 79 QYKVQPSPDGLAQAFIIGEEFIGGD---DCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHV--NDPERYGVVEFDQ 153 (292)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCC---CEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEEEEc--CCcccCcEEEECC
Confidence 8998888999999999999999642 48888999887 8999999999988888899888877 4788999999984
Q ss_pred CCCcEEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhcccccccccccccccccccc
Q 016989 160 DTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLA 239 (379)
Q Consensus 160 ~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~ 239 (379)
+++|..+.|||..+.++++++|+|+|++++++.++...++.+ +++ . + +|+++.++
T Consensus 154 -~g~v~~i~EKP~~p~s~~a~~GiY~~~~~v~~~~~~~~~~~~-ge~---------------------~-i-td~~~~~l 208 (292)
T PRK15480 154 -NGTAISLEEKPLQPKSNYAVTGLYFYDNDVVEMAKNLKPSAR-GEL---------------------E-I-TDINRIYM 208 (292)
T ss_pred -CCcEEEEEECCCCCCCCEEEEEEEEEChHHHHHHhhcCCCCC-Cee---------------------E-h-HHHHHHHH
Confidence 789999999998888999999999999999999876544322 111 1 1 67777777
Q ss_pred CCceE-EEEEcccc-hhhcCCccchhhcchHHH
Q 016989 240 GKKQL-YTYETMDF-WEQIKTPGMSLKCSGLYL 270 (379)
Q Consensus 240 ~~~~v-~~~~~~~~-w~~i~t~~d~~~a~~~~l 270 (379)
++.++ ..+...|+ |.|+|||++|.+|++++.
T Consensus 209 ~~g~~~~~~~~~g~~W~DiGt~~~l~~a~~~~~ 241 (292)
T PRK15480 209 EQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIA 241 (292)
T ss_pred hcCCeEEEEecCCcEEECCCCHHHHHHHHHHHH
Confidence 66555 44566674 999999999999987775
No 26
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=100.00 E-value=1.3e-36 Score=272.67 Aligned_cols=228 Identities=39% Similarity=0.722 Sum_probs=192.0
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEEEe
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~ 83 (379)
|++|||||| .|+||+|+|..+||+|+|++|+|||+|+++++.. ++|++++..+.+.+|+.......++.+.+.
T Consensus 1 m~~iIlAaG--~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~~g~~~v~iv~~~~~~~~~~~l~~~~~~~~~~i~~~ 78 (233)
T cd06425 1 MKALILVGG--YGTRLRPLTLTVPKPLVEFCNKPMIEHQIEALAKAGVKEIILAVNYRPEDMVPFLKEYEKKLGIKITFS 78 (233)
T ss_pred CcEEEecCC--CccccCccccCCCCccCeECCcchHHHHHHHHHHCCCcEEEEEeeeCHHHHHHHHhcccccCCeEEEec
Confidence 689999999 9999999999999999999999999999999985 666666666678899876434466777676
Q ss_pred cCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCCCc
Q 016989 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNE 163 (379)
Q Consensus 84 ~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~~ 163 (379)
.+....|++++++.+.++++.. .+++++++||++++.+++++++.|.++++++++++.+.+ ++..||++..++++++
T Consensus 79 ~~~~~~G~~~al~~a~~~~~~~-~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~v~~d~~~~~ 155 (233)
T cd06425 79 IETEPLGTAGPLALARDLLGDD-DEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVE--DPSKYGVVVHDENTGR 155 (233)
T ss_pred cCCCCCccHHHHHHHHHHhccC-CCCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcC--CccccCeEEEcCCCCE
Confidence 6677899999999999998642 235999999999999999999999999999999988763 5678999988843689
Q ss_pred EEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccccCCce
Q 016989 164 LLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQ 243 (379)
Q Consensus 164 v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~ 243 (379)
|..+.|||....++++++|+|+|++++|+.+..... + +..++++.++++.+
T Consensus 156 v~~~~ekp~~~~~~~~~~Giyi~~~~~l~~l~~~~~--------------------------~---~~~~~~~~l~~~~~ 206 (233)
T cd06425 156 IERFVEKPKVFVGNKINAGIYILNPSVLDRIPLRPT--------------------------S---IEKEIFPKMASEGQ 206 (233)
T ss_pred EEEEEECCCCCCCCEEEEEEEEECHHHHHhcccCcc--------------------------c---chhhhHHHHHhcCC
Confidence 999999998767889999999999999988864110 0 12577888888889
Q ss_pred EEEEEcccchhhcCCccchhhcchHHH
Q 016989 244 LYTYETMDFWEQIKTPGMSLKCSGLYL 270 (379)
Q Consensus 244 v~~~~~~~~w~~i~t~~d~~~a~~~~l 270 (379)
+.+|+++|+|.|+|||++|++|++++|
T Consensus 207 v~~~~~~g~w~digt~~~~~~a~~~~l 233 (233)
T cd06425 207 LYAYELPGFWMDIGQPKDFLKGMSLYL 233 (233)
T ss_pred EEEEeeCCEEEcCCCHHHHHHHHHHhC
Confidence 999999999999999999999987664
No 27
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-35 Score=280.47 Aligned_cols=322 Identities=17% Similarity=0.337 Sum_probs=245.6
Q ss_pred CCceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccC--Cc
Q 016989 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNEL--RI 78 (379)
Q Consensus 6 ~~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~--~~ 78 (379)
...++||++|.. +.+||+|+|..+|+.|||++|.|||+|++++|.+ |+|++.....++.+|++...+.. ..
T Consensus 22 ~~rLqAIllaDs--f~trF~Plt~~~p~~LLPlaNVpmIdYtL~~L~~agV~eVfvfc~~~~~qi~e~i~~sew~~~~~~ 99 (673)
T KOG1461|consen 22 EHRLQAILLADS--FETRFRPLTLEKPRVLLPLANVPMIDYTLEWLERAGVEEVFVFCSAHAAQIIEYIEKSEWYLPMSF 99 (673)
T ss_pred ccceEEEEEecc--chhcccccccCCCceEeeecCchHHHHHHHHHHhcCceEEEEEecccHHHHHHHHhhccccccccc
Confidence 367899999999 9999999999999999999999999999999987 77777655556999998633322 22
Q ss_pred cEEEecCCCCCChHHHHHHHHHh-hccCCCCeEEEEcCCeeecCChHHHHHHHHh-----cCCceEEEEEEeCCCCCCce
Q 016989 79 PVRYLREDKPHGSAGALYNFRDL-IMEDNPSHIFLLNCDVCCSFPLPEMLDAHRN-----YGGMGTILVIKVSAESASQF 152 (379)
Q Consensus 79 ~i~~~~~~~~~g~~~al~~~~~~-i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~-----~~~~~ti~~~~~~~~~~~~~ 152 (379)
.+..+........+++++..-+. +.. ++|++++||++.+.+|.++++.|+. +++.+||++.+........-
T Consensus 100 ~v~ti~s~~~~S~GDamR~id~k~lit---gDFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iMTmv~k~~st~~~~~~ 176 (673)
T KOG1461|consen 100 IVVTICSGESRSVGDAMRDIDEKQLIT---GDFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIMTMVFKESSTRETTEQ 176 (673)
T ss_pred eEEEEcCCCcCcHHHHHHHHHhcceee---cceEEEeCCeeecCchHHHHHHHHHHhhhCccceEEEEEeccccccCCcc
Confidence 34444445667888888875332 222 3599999999999999999999944 34557888877632223344
Q ss_pred eEEEEeCCCCcEEEeee----cCC--------------CcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhh
Q 016989 153 GELVADPDTNELLHYTE----KPE--------------TFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFE 214 (379)
Q Consensus 153 g~v~~d~~~~~v~~~~e----kp~--------------~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 214 (379)
-.+.+|..+.++..|.+ +.. ....++.+++|-+|++.++.+|.+
T Consensus 177 ~~~avd~~T~~ll~yq~~~~~~~~~~l~~sl~d~~~~v~vr~DL~dc~IdIcS~~V~sLF~d------------------ 238 (673)
T KOG1461|consen 177 VVIAVDSRTSRLLHYQKCVREKHDIQLDLSLFDSNDEVEVRNDLLDCQIDICSPEVLSLFTD------------------ 238 (673)
T ss_pred eEEEEcCCcceEEeehhhcccccccccCHHHhcCCCcEEEEccCCCceeeEecHhHHHHhhh------------------
Confidence 45667766789998886 210 114779999999999999999975
Q ss_pred hhhhhccccccccccccccccccccC----CceEEEEEccc--chhhcCCccchhhcchHHHHhhh-hcCCccccCCC--
Q 016989 215 ALQSATRNLTTDFVRLDQDILSPLAG----KKQLYTYETMD--FWEQIKTPGMSLKCSGLYLAQFR-LTSPNLLASGD-- 285 (379)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~d~l~~l~~----~~~v~~~~~~~--~w~~i~t~~d~~~a~~~~l~~~~-~~~~~~~~~~~-- 285 (379)
++||. ...|++..++. +.+|+++.... |...+.+...|...++.++.||. ++.|+.-+.+.
T Consensus 239 ---------NFDyq-~r~DfV~GvL~~dilg~kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~YP~Vpd~~~~~~q~ 308 (673)
T KOG1461|consen 239 ---------NFDYQ-TRDDFVRGVLVDDILGYKIHVHVLSSIDYAARVENLRSYDLVSKDIIQRWTYPLVPDINFSGNQT 308 (673)
T ss_pred ---------cccce-ehhhhhhhhhhhhhcCCeEEEEEcChhhhhhhhcccHHHHHHHHHHHHhhcccccccccCCCCce
Confidence 33343 22566665442 57899999865 78899999999988899999987 45555433331
Q ss_pred ---------------CCCCeEEecCeEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecccccccccceEECCCc
Q 016989 286 ---------------GTKNATIIGDVYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAV 350 (379)
Q Consensus 286 ---------------~~~~~~i~~~~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~ 350 (379)
...++.++..+.||.++.|+. ++.|.||+||+||+||.+++|.+ |.||.+|
T Consensus 309 ~~~~r~~IYk~~dv~~~~~~~v~~~~~ig~gT~Ig~----g~~I~NSVIG~~c~IgsN~~I~~----------S~iw~~v 374 (673)
T KOG1461|consen 309 FSLERRNIYKSPDVVLSHSVIVGANVVIGAGTKIGS----GSKISNSVIGANCRIGSNVRIKN----------SFIWNNV 374 (673)
T ss_pred eeecccccccCccceehhhccccceEEecccccccC----CCeeecceecCCCEecCceEEee----------eeeecCc
Confidence 123456666666777777764 56799999999999999999998 9999999
Q ss_pred EECCCcEEeccEECCCceeccccc
Q 016989 351 GVEDEVVVTNSIVLPNKTLNVSVH 374 (379)
Q Consensus 351 ~i~~~~~i~~~ii~~~~~i~~~~~ 374 (379)
+||+||.|.+|+|++++.|++++.
T Consensus 375 ~Igdnc~I~~aii~d~v~i~~~~~ 398 (673)
T KOG1461|consen 375 TIGDNCRIDHAIICDDVKIGEGAI 398 (673)
T ss_pred EECCCceEeeeEeecCcEeCCCcc
Confidence 999999999999999999999987
No 28
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=100.00 E-value=7.4e-36 Score=293.45 Aligned_cols=310 Identities=21% Similarity=0.310 Sum_probs=206.0
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEEEe
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~ 83 (379)
|+||||||| +|+||++ .+||+|+|++|+|||+|+++.+.+ +++++.+..+.+.+++.+ ++ +.+.
T Consensus 1 m~aiIlAaG--~g~R~~~---~~pK~l~~i~gkpli~~~l~~l~~~g~~~iiiv~~~~~~~i~~~~~~----~~--i~~~ 69 (451)
T TIGR01173 1 LSVVILAAG--KGTRMKS---DLPKVLHPLAGKPMLEHVIDAARALGPQKIHVVYGHGAEQVRKALAN----RD--VNWV 69 (451)
T ss_pred CeEEEEcCC--CCcccCC---CCchhhceeCCccHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcC----CC--cEEE
Confidence 689999999 9999998 789999999999999999999986 555555555567777764 23 3344
Q ss_pred cCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCC
Q 016989 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDT 161 (379)
Q Consensus 84 ~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~ 161 (379)
.+....|++++++.++++++.+ ++|++++||.++ +.++.++++.|.+. ..++++.+. .++..|+.+..++ +
T Consensus 70 ~~~~~~G~~~ai~~a~~~l~~~--~~~lv~~~D~p~i~~~~~~~l~~~~~~~--~~~~~~~~~--~~~~~~g~v~~d~-~ 142 (451)
T TIGR01173 70 LQAEQLGTGHAVLQALPFLPDD--GDVLVLYGDVPLISAETLERLLEAHRQN--GITLLTAKL--PDPTGYGRIIREN-D 142 (451)
T ss_pred EcCCCCchHHHHHHHHHhcCCC--CcEEEEECCcCCcCHHHHHHHHHHHhhC--CEEEEEEec--CCCCCCCEEEEcC-C
Confidence 4555679999999999998642 469999999965 66799999988764 366666665 3566788888874 6
Q ss_pred CcEEEeeecCCCc----ccceeeeeEEEeCHhh-HHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccc
Q 016989 162 NELLHYTEKPETF----VSDLINCGVYVFTPDI-FNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILS 236 (379)
Q Consensus 162 ~~v~~~~ekp~~~----~~~~~~~Giy~~~~~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~ 236 (379)
++|..+.|||... ...+.++|+|+|++++ ++.+........+++ ++ + .++++
T Consensus 143 g~v~~~~ek~~~~~~~~~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~~e---------------------~~-~-~~~~~ 199 (451)
T TIGR01173 143 GKVTAIVEDKDANAEQKAIKEINTGVYVFDGAALKRWLPKLSNNNAQGE---------------------YY-L-TDVIA 199 (451)
T ss_pred CCEEEEEEcCCCChHHhcCcEEEEEEEEEeHHHHHHHHHhcccccccCc---------------------Ee-H-HHHHH
Confidence 7899999986532 2357899999999987 455654322111111 11 1 57777
Q ss_pred cccCC-ceEEEEEcccc--hhhcCCccchhhcchHHHHhhhh--cCCc--c------ccCC--------CCCCCeEEecC
Q 016989 237 PLAGK-KQLYTYETMDF--WEQIKTPGMSLKCSGLYLAQFRL--TSPN--L------LASG--------DGTKNATIIGD 295 (379)
Q Consensus 237 ~l~~~-~~v~~~~~~~~--w~~i~t~~d~~~a~~~~l~~~~~--~~~~--~------~~~~--------~~~~~~~i~~~ 295 (379)
.++++ .++++|+.+++ |.++++|+++.+++.++..+... ..++ + ...+ .+.+++.|.++
T Consensus 200 ~l~~~g~~v~~~~~~~~~~~~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~~~i~~~~~i~~~ 279 (451)
T TIGR01173 200 LAVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTLRDPARFDIRGTVEIGRDVEIDPNVILEGK 279 (451)
T ss_pred HHHHCCCeEEEEEcCChhheecCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeEEECCccEECCCCEEcCCeEEeCc
Confidence 77655 68999999887 89999999998876655432110 0000 0 0000 11233334444
Q ss_pred eEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEECCCceecccc
Q 016989 296 VYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTLNVSV 373 (379)
Q Consensus 296 ~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~~~~~i~~~~ 373 (379)
+.||+++.|+ ++|.|.+++||++|.|+++|+|.+ |+|+++|.||++|+|. +++|++++.|++++
T Consensus 280 ~~ig~~~~I~----~~~~i~~~~i~~~~~I~~~~~i~~----------~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~ 344 (451)
T TIGR01173 280 VKIGDDVVIG----PGCVIKNSVIGSNVVIKAYSVLEG----------SEIGEGCDVGPFARLRPGSVLGAGVHIGNFV 344 (451)
T ss_pred eEECCCCEEC----CCcEEeeeEecCCCEEeeecEEec----------ccccCCcEECCeeEECCCCEECCCcEEccce
Confidence 4444444444 344566666666666666666655 5555555555555554 45555555555443
No 29
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=100.00 E-value=2.1e-36 Score=274.04 Aligned_cols=234 Identities=32% Similarity=0.588 Sum_probs=190.0
Q ss_pred EEEEEecCCCCCCccCCCCCCCCCCCceeCCc-chhHHHHHhcCc------EEEEcccchHHHHHHHHhhcccCCccEEE
Q 016989 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVRY 82 (379)
Q Consensus 10 ~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~-pli~~~i~~l~~------iiv~~~~~~~~i~~~l~~~~~~~~~~i~~ 82 (379)
|||||||| .||||+|+|..+||||+|++|+ |||+|+|+.+.. ++|++.+..+.+.+|+++. ..+++++.+
T Consensus 1 kavIla~G--~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~~~~i~~~~~~~-~~~~~~i~~ 77 (248)
T PF00483_consen 1 KAVILAGG--KGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYKEEQIEEHLGSG-YKFGVKIEY 77 (248)
T ss_dssp EEEEEEES--CCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTTHHHHHHHHTTS-GGGTEEEEE
T ss_pred CEEEECCC--CCccCchhhhccccccceecCCCcchhhhhhhhcccCCceEEEEEeeccccccccccccc-cccccccee
Confidence 69999999 9999999999999999999999 999999999986 5566656667799999873 456778888
Q ss_pred ecCCCCCChHHHHHHHHHhhccCC-CCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCC
Q 016989 83 LREDKPHGSAGALYNFRDLIMEDN-PSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDT 161 (379)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~i~~~~-~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~ 161 (379)
+.++...|++++++.+.+.+..+. +++|++++||++++.++.++++.|.++++++++.+...+..+++.||.+..|+ +
T Consensus 78 i~~~~~~Gta~al~~a~~~i~~~~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~-~ 156 (248)
T PF00483_consen 78 IVQPEPLGTAGALLQALDFIEEEDDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVPVEDPSRYGVVEVDE-D 156 (248)
T ss_dssp EEESSSSCHHHHHHHTHHHHTTSEE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEESSGGGGSEEEEEET-T
T ss_pred eecccccchhHHHHHHHHHhhhccccceEEEEeccccccchhhhHHHhhhccccccccccccccccccccceeeeecc-c
Confidence 888888999999999999998652 34599999999999999999999999888543333333335789999999994 7
Q ss_pred CcEEEeeecCCCcc-cceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccccC
Q 016989 162 NELLHYTEKPETFV-SDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAG 240 (379)
Q Consensus 162 ~~v~~~~ekp~~~~-~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~ 240 (379)
++|..+.|||.... +.++++|+|+|++++|+.+.+.......+ .++. .|+++.+++
T Consensus 157 ~~V~~~~EKP~~~~~~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~--------------------~~~l---~d~i~~~~~ 213 (248)
T PF00483_consen 157 GRVIRIVEKPDNPNASNLINTGIYIFKPEIFDFLLEMIKENARG--------------------EDFL---TDAIPKLLE 213 (248)
T ss_dssp SEEEEEEESCSSHSHSSEEEEEEEEEETHHHHHHHHHHHTCTTS--------------------SHHH---HHHHHHHHH
T ss_pred eeEEEEeccCcccccceeccCceEEEcchHHHHHhhhhhccchh--------------------hhHH---HHHHHHHHH
Confidence 89999999999776 88999999999999998884321111111 1111 678888876
Q ss_pred Cc-eEEEEEccc--chhhcCCccchhhcchHHH
Q 016989 241 KK-QLYTYETMD--FWEQIKTPGMSLKCSGLYL 270 (379)
Q Consensus 241 ~~-~v~~~~~~~--~w~~i~t~~d~~~a~~~~l 270 (379)
+. .+.++...+ +|.|+|+|++|++|++.++
T Consensus 214 ~~~~~~~~~~~~~~~w~dig~~~~~~~a~~~~~ 246 (248)
T PF00483_consen 214 QGKKVYAFIFEGNAYWIDIGTPEDYLEANMDLL 246 (248)
T ss_dssp TTCEEEEEEHSSEE-EEETSSHHHHHHHHHHHH
T ss_pred cCCceEEEEecCCeEEEECCCHHHHHHHHHHHh
Confidence 64 677889888 7999999999999998765
No 30
>PRK10122 GalU regulator GalF; Provisional
Probab=100.00 E-value=1.1e-35 Score=274.03 Aligned_cols=232 Identities=19% Similarity=0.275 Sum_probs=186.7
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhc--------
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSIS-------- 73 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~-------- 73 (379)
.+|+||||||| .||||+|+|..+||||+||+|||||+|+++++.+ |+|++++..+.+.+|++...
T Consensus 2 ~~mkavIlAaG--~GtRl~PlT~~~PK~llpi~gkpiI~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~~~ 79 (297)
T PRK10122 2 TNLKAVIPVAG--LGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CceEEEEECCc--CCcccCcccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEcCCChHHHHHHHhcchhHHHHHhh
Confidence 57999999999 9999999999999999999999999999999986 77777777777999886310
Q ss_pred -------------ccCCccEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeec--------CChHHHHHHHHh
Q 016989 74 -------------NELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS--------FPLPEMLDAHRN 132 (379)
Q Consensus 74 -------------~~~~~~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~--------~dl~~~l~~~~~ 132 (379)
..+++++.++.|+.++|++++++.+++++.+ ++|+++.||++++ .|++++++.|.+
T Consensus 80 ~~k~~~l~~~~~~~~~~~~i~~~~q~~~lGtg~al~~a~~~l~~---~~fvvi~gD~l~~~~~~~~~~~dl~~li~~h~~ 156 (297)
T PRK10122 80 RVKRQLLAEVQSICPPGVTIMNVRQGQPLGLGHSILCARPAIGD---NPFVVVLPDVVIDDASADPLRYNLAAMIARFNE 156 (297)
T ss_pred cchhhhHHhhhhccCCCceEEEeecCCcCchHHHHHHHHHHcCC---CCEEEEECCeeccCccccccchhHHHHHHHHHH
Confidence 0135677888888899999999999999953 3589999999885 489999999988
Q ss_pred cCCceEEEEEEeCCCCCCceeEEEEeC---CCC---cEEEeeecCCCc---ccceeeeeEEEeCHhhHHHhhcccccccc
Q 016989 133 YGGMGTILVIKVSAESASQFGELVADP---DTN---ELLHYTEKPETF---VSDLINCGVYVFTPDIFNAIQGVSSQRKD 203 (379)
Q Consensus 133 ~~~~~ti~~~~~~~~~~~~~g~v~~d~---~~~---~v~~~~ekp~~~---~~~~~~~Giy~~~~~~l~~l~~~~~~~~~ 203 (379)
.+++. +++.... +++.+||.+..++ +++ +|..+.|||..+ .++++++|+|+|++++|+.+.+..+...
T Consensus 157 ~~~~~-~~~~~~~-~~~~~yGvv~~d~~~~~~g~v~~I~~~~EKp~~~~~~~s~~~~~GiYi~~~~i~~~l~~~~~~~~- 233 (297)
T PRK10122 157 TGRSQ-VLAKRMP-GDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWPELERTEPGAW- 233 (297)
T ss_pred hCCcE-EEEEECC-CCCCCceEEEecCcccCCCCeeeEEEEEECCCCcccCCccEEEEEEEEECHHHHHHHHhCCCCCC-
Confidence 87764 4444433 3788999998852 244 688999998644 3789999999999999999876332111
Q ss_pred chhhhhcchhhhhhhhccccccccccccccccccccCCceEEEEEcccchhhcCCccchhhcchHH
Q 016989 204 RENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLY 269 (379)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~ 269 (379)
+++ + | .|+++.++++.++.+|.++|+|.|+|+|++|++|+..+
T Consensus 234 ~e~--------------------~--l-td~i~~l~~~~~v~~~~~~G~w~DiG~p~~~~~a~~~~ 276 (297)
T PRK10122 234 GRI--------------------Q--L-TDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKY 276 (297)
T ss_pred Cee--------------------e--H-HHHHHHHHhCCCEEEEEeCCEEEcCCCHHHHHHHHHHH
Confidence 111 1 1 68888888888999999999999999999999998655
No 31
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=100.00 E-value=7.9e-36 Score=273.41 Aligned_cols=228 Identities=20% Similarity=0.310 Sum_probs=188.0
Q ss_pred EEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EE-EEcccchHHHHHHHHhhcccCCccEEEe
Q 016989 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IY-LVGFYEEREFALYVSSISNELRIPVRYL 83 (379)
Q Consensus 10 ~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----ii-v~~~~~~~~i~~~l~~~~~~~~~~i~~~ 83 (379)
+||||||| .||||+|+|..+||+|+||+|||||+|+++.+.. |+ |++++..+.+++++++ ...+++++.+.
T Consensus 1 kaIILAgG--~GtRL~plT~~~pK~Llpv~gkPmI~~~L~~l~~aGi~~I~iv~~~~~~~~~~~~lg~-g~~~g~~i~~~ 77 (286)
T TIGR01207 1 KGIILAGG--SGTRLYPITRAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGD-GSQWGVNLSYA 77 (286)
T ss_pred CEEEECCC--CCccCCcccCCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHhcc-ccccCceEEEE
Confidence 58999999 9999999999999999999999999999999986 55 4445555668888876 35688899998
Q ss_pred cCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee-cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCCC
Q 016989 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN 162 (379)
Q Consensus 84 ~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~-~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~ 162 (379)
.++.+.|++++++.+.+++.+ +.++++.||+++ +.++.++++.|.+.++++++++.+++ ++.+||++..|+ ++
T Consensus 78 ~q~~~~Gta~al~~a~~~l~~---~~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~--~p~~yGvv~~d~-~g 151 (286)
T TIGR01207 78 VQPSPDGLAQAFIIGEDFIGG---DPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVS--DPERYGVVEFDS-NG 151 (286)
T ss_pred EccCCCCHHHHHHHHHHHhCC---CCEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEcc--CHHHCceEEECC-CC
Confidence 888899999999999999964 258888999887 88999999999888888899888874 678999999984 78
Q ss_pred cEEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccccCCc
Q 016989 163 ELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKK 242 (379)
Q Consensus 163 ~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~ 242 (379)
+|..+.|||..+.++++++|+|+|++++++.+++..++.+ +++ . + +|+++.++++.
T Consensus 152 ~V~~i~EKp~~~~s~~~~~GiYi~~~~i~~~l~~~~~~~~-ge~---------------------e-i-tdv~~~~l~~g 207 (286)
T TIGR01207 152 RAISIEEKPAQPKSNYAVTGLYFYDNRVVEIARQLKPSAR-GEL---------------------E-I-TDLNRVYLEEG 207 (286)
T ss_pred eEEEEEECCCCCCCCEEEEEEEEEchHHHHHHhhcCCCCC-CcE---------------------e-H-HHHHHHHHHcC
Confidence 9999999998888899999999999999998876543221 111 1 1 57787777665
Q ss_pred eEEEEEc-ccc-hhhcCCccchhhcchHHH
Q 016989 243 QLYTYET-MDF-WEQIKTPGMSLKCSGLYL 270 (379)
Q Consensus 243 ~v~~~~~-~~~-w~~i~t~~d~~~a~~~~l 270 (379)
++.++.. .|+ |.|+|||++|++|++++.
T Consensus 208 ~l~v~~~~~g~~W~DiGt~~~l~~A~~~~~ 237 (286)
T TIGR01207 208 RLSVELLGRGYAWLDTGTHDSLLEASNFIQ 237 (286)
T ss_pred CcEEEEecCCCEEEeCCCHHHHHHHHHHHH
Confidence 5544444 576 999999999999986664
No 32
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=100.00 E-value=2.6e-35 Score=265.40 Aligned_cols=228 Identities=22% Similarity=0.324 Sum_probs=186.3
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEE-cccchHHHHHHHHhhcccCCccEEE
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLV-GFYEEREFALYVSSISNELRIPVRY 82 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~-~~~~~~~i~~~l~~~~~~~~~~i~~ 82 (379)
|+||||||| .|+||+|+|..+||||+|++|+|||+|+++++.. |+++ ++...+.+.+|++. ...+++++.+
T Consensus 1 m~~iIlAaG--~gtRl~plt~~~pK~llpv~~~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~l~~-~~~~~~~i~~ 77 (240)
T cd02538 1 MKGIILAGG--SGTRLYPLTKVVSKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPEDLPLFKELLGD-GSDLGIRITY 77 (240)
T ss_pred CeEEEEcCc--CcccCCccccCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEeCcchHHHHHHHHhc-ccccCceEEE
Confidence 689999999 9999999999999999999999999999999986 5554 44444568888875 3456777877
Q ss_pred ecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee-cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCC
Q 016989 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDT 161 (379)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~-~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~ 161 (379)
..+....|++++++.++++++. +.+++++||.++ +.++.++++.|.+.++++++++.+.. ++..||.+..++ +
T Consensus 78 ~~~~~~~G~~~al~~a~~~~~~---~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~v~~d~-~ 151 (240)
T cd02538 78 AVQPKPGGLAQAFIIGEEFIGD---DPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEVN--DPERYGVVEFDE-N 151 (240)
T ss_pred eeCCCCCCHHHHHHHHHHhcCC---CCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEECC--chhcCceEEecC-C
Confidence 7777788999999999998864 359999999987 77899999999888888888888763 567899999984 6
Q ss_pred CcEEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccccCC
Q 016989 162 NELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK 241 (379)
Q Consensus 162 ~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~ 241 (379)
++|..+.|||......+.++|+|+|++++|+.+.+..+.. +.++. + .++++.++++
T Consensus 152 g~v~~~~ekp~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~----------------------~~~~~-l-~d~~~~l~~~ 207 (240)
T cd02538 152 GRVLSIEEKPKKPKSNYAVTGLYFYDNDVFEIAKQLKPSA----------------------RGELE-I-TDVNNEYLEK 207 (240)
T ss_pred CcEEEEEECCCCCCCCeEEEEEEEECHHHHHHHHhcCCCC----------------------CCeEE-h-HHHHHHHHHh
Confidence 8999999999877788999999999999998886543211 11111 1 5788888777
Q ss_pred ceEEEEEcc--cchhhcCCccchhhcchHH
Q 016989 242 KQLYTYETM--DFWEQIKTPGMSLKCSGLY 269 (379)
Q Consensus 242 ~~v~~~~~~--~~w~~i~t~~d~~~a~~~~ 269 (379)
.++.++.++ |+|.+||||++|++|++++
T Consensus 208 g~~~~~~~~~~g~w~digt~~~~~~a~~~~ 237 (240)
T cd02538 208 GKLSVELLGRGFAWLDTGTHESLLEASNFV 237 (240)
T ss_pred CCeEEEEeCCCcEEEeCCCHHHHHHHHHHH
Confidence 677676665 9999999999999998765
No 33
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.3e-34 Score=285.13 Aligned_cols=226 Identities=21% Similarity=0.359 Sum_probs=167.1
Q ss_pred ceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEEE
Q 016989 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (379)
Q Consensus 8 ~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~ 82 (379)
.++||||||| .|+||++ .+||+|+|++|+|||+|+++++.+ ++++..+..+.+.+++.. .+.+
T Consensus 2 ~~~avIlAaG--~g~Rl~~---~~pK~ll~i~Gkpli~~~l~~l~~~gi~~iivvv~~~~~~i~~~~~~-------~~~~ 69 (458)
T PRK14354 2 NRYAIILAAG--KGTRMKS---KLPKVLHKVCGKPMVEHVVDSVKKAGIDKIVTVVGHGAEEVKEVLGD-------RSEF 69 (458)
T ss_pred CceEEEEeCC--CCcccCC---CCChhhCEeCCccHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcC-------CcEE
Confidence 4689999999 9999986 799999999999999999999986 555545555557777653 1234
Q ss_pred ecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCC
Q 016989 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPD 160 (379)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~ 160 (379)
..+....|++++++.++++++.. .+.+++++||.++ +.++.++++.|.+.+++.++++... .++..|+.+..++
T Consensus 70 ~~~~~~~g~~~al~~a~~~l~~~-~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~~~--~~~~~~g~v~~d~- 145 (458)
T PRK14354 70 ALQEEQLGTGHAVMQAEEFLADK-EGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTAIA--ENPTGYGRIIRNE- 145 (458)
T ss_pred EEcCCCCCHHHHHHHHHHHhccc-CCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEEEc--CCCCCceEEEEcC-
Confidence 44566789999999999988642 2469999999965 6789999999987777788777665 3567788877774
Q ss_pred CCcEEEeeecCCC----cccceeeeeEEEeCHh-hHHHhhccccccccchhhhhcchhhhhhhhcccccccccccccccc
Q 016989 161 TNELLHYTEKPET----FVSDLINCGVYVFTPD-IFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDIL 235 (379)
Q Consensus 161 ~~~v~~~~ekp~~----~~~~~~~~Giy~~~~~-~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l 235 (379)
+++|..+.|||.. ....+.++|+|+|+++ +++.+++.......+++ . + .+++
T Consensus 146 ~~~V~~~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~---------------------~-~-~d~~ 202 (458)
T PRK14354 146 NGEVEKIVEQKDATEEEKQIKEINTGTYCFDNKALFEALKKISNDNAQGEY---------------------Y-L-TDVI 202 (458)
T ss_pred CCCEEEEEECCCCChHHhcCcEEEEEEEEEEHHHHHHHHHHhCccccCCcE---------------------e-H-HHHH
Confidence 6789999998642 2246789999999986 56777654321111111 1 1 5666
Q ss_pred ccccC-CceEEEEEcccch--hhcCCccchhhcchHHHHh
Q 016989 236 SPLAG-KKQLYTYETMDFW--EQIKTPGMSLKCSGLYLAQ 272 (379)
Q Consensus 236 ~~l~~-~~~v~~~~~~~~w--~~i~t~~d~~~a~~~~l~~ 272 (379)
+.+.+ +.++++|.++++| .++++++||..|+.++..+
T Consensus 203 ~~l~~~g~~v~~~~~~g~~~~i~i~~~~Dl~~a~~ll~~~ 242 (458)
T PRK14354 203 EILKNEGEKVGAYQTEDFEESLGVNDRVALAEAEKVMRRR 242 (458)
T ss_pred HHHHHCCCeEEEEecCCcceEEccCCHHHHHHHHHHHHHH
Confidence 66654 4689999998765 5777999999887665443
No 34
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2.4e-34 Score=282.25 Aligned_cols=313 Identities=21% Similarity=0.291 Sum_probs=211.2
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc----EEEEcccchHHHHHHHHhhcccCCccEEEec
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRYLR 84 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~ 84 (379)
|+||||||| .|+||++ .+||+|+|++|+|||+|+++.+.+ ++|++.+..+.+.+++.. .+.+..
T Consensus 1 m~avIlA~G--~gtRl~~---~~pK~l~~v~gkpli~~~l~~l~~~~~~i~vv~~~~~~~i~~~~~~-------~~~~~~ 68 (448)
T PRK14357 1 MRALVLAAG--KGTRMKS---KIPKVLHKISGKPMINWVIDTAKKVAQKVGVVLGHEAELVKKLLPE-------WVKIFL 68 (448)
T ss_pred CeEEEECCC--CCccCCC---CCCceeeEECCeeHHHHHHHHHHhcCCcEEEEeCCCHHHHHHhccc-------ccEEEe
Confidence 689999999 9999986 789999999999999999999985 666666555567776642 133445
Q ss_pred CCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCCC
Q 016989 85 EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN 162 (379)
Q Consensus 85 ~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~ 162 (379)
++..+|++++++.+++++..+ ++|++++||.++ +.+++++++.|.++++++++++.+.. ++..|+.+..+ ++
T Consensus 69 ~~~~~g~~~ai~~a~~~l~~~--~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~~--~~~~~g~v~~d--~g 142 (448)
T PRK14357 69 QEEQLGTAHAVMCARDFIEPG--DDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADLE--DPTGYGRIIRD--GG 142 (448)
T ss_pred cCCCCChHHHHHHHHHhcCcC--CeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEcC--CCCCcEEEEEc--CC
Confidence 567789999999999988532 579999999965 67899999999888888999888763 67789988776 56
Q ss_pred cEEEeeecCCCc----ccceeeeeEEEeCHhhH-HHhhccccccccchhhhhcchhhhhhhhcccccccccccccccccc
Q 016989 163 ELLHYTEKPETF----VSDLINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSP 237 (379)
Q Consensus 163 ~v~~~~ekp~~~----~~~~~~~Giy~~~~~~l-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~ 237 (379)
++ .+.|||..+ ..++.++|+|+|++++| +.+++..+....+++ + + .|+++.
T Consensus 143 ~v-~~~e~~~~~~~~~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~~~~---------------------~-~-~d~i~~ 198 (448)
T PRK14357 143 KY-RIVEDKDAPEEEKKIKEINTGIYVFSGDFLLEVLPKIKNENAKGEY---------------------Y-L-TDAVNF 198 (448)
T ss_pred eE-EEEECCCCChHHhcCcEEEeEEEEEEHHHHHHHHHhhCcCCCCCeE---------------------E-H-HHHHHh
Confidence 78 777765422 13589999999999975 556543221111111 1 1 466655
Q ss_pred ccCCceEEEEEcccchh--hcCCccchhhcchHHHHhhhhcCCccccCC--CCCC-CeEEecCeEECCCcEECCCCCCCc
Q 016989 238 LAGKKQLYTYETMDFWE--QIKTPGMSLKCSGLYLAQFRLTSPNLLASG--DGTK-NATIIGDVYVHPSAKIHPTAKENA 312 (379)
Q Consensus 238 l~~~~~v~~~~~~~~w~--~i~t~~d~~~a~~~~l~~~~~~~~~~~~~~--~~~~-~~~i~~~~~i~~~~~i~~~~~~~~ 312 (379)
+ .++.+|...++|. .+++++++..+..++...... .+...+ ..++ .+.+++++.||+++.|++++.
T Consensus 199 ~---~~v~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~Ig~~~~i~~~~~--- 269 (448)
T PRK14357 199 A---EKVRVVKTEDLLEITGVNTRIQLAWLEKQLRMRILE---ELMENGVTILDPNTTYIHYDVEIGMDTIIYPMTF--- 269 (448)
T ss_pred h---hheeEEecCCHHHEEccCCHHHHHHHHHHHHHHHHH---HHHHcCCEEeCCCcEEEccceEECCCcEEcCCcE---
Confidence 5 3588888888855 566999988776555332110 010011 0112 346666666666666666543
Q ss_pred EEe-ceEECCCCEECCCcEEeeccc------ccccccceEECCCcEECCCcEEe-ccEECCCceecccc
Q 016989 313 VVT-NAIVGWKSSIGRWSRVQAEGD------FNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTLNVSV 373 (379)
Q Consensus 313 ~i~-~s~ig~~~~ig~~~~i~~~~~------~~~~~~~sii~~~~~i~~~~~i~-~~ii~~~~~i~~~~ 373 (379)
|. ++.||++|.|+++|.|.+..+ ..+.+++|+|++++.|++++.|. +++|+++++|++++
T Consensus 270 -I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~ 337 (448)
T PRK14357 270 -IEGKTRIGEDCEIGPMTRIVDCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFV 337 (448)
T ss_pred -EEeeeEECCCcEECCCceecccEECCCCEEeeeEEEEEEEeCCcEECCCcEECCcccccCCcEecCce
Confidence 33 455555555555544332111 12334557777777777777774 57777777777654
No 35
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=8.2e-33 Score=271.66 Aligned_cols=223 Identities=21% Similarity=0.394 Sum_probs=162.4
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEEEe
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~ 83 (379)
+.+|||||| .|+||++ .+||+|+|++|+|||+|++++|.+ ++|++.+..+.+.+++... + .+.++
T Consensus 2 ~~~iIlAaG--~gsR~~~---~~pK~ll~v~gkpli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~----~-~i~~v 71 (450)
T PRK14360 2 LAVAILAAG--KGTRMKS---SLPKVLHPLGGKSLVERVLDSCEELKPDRRLVIVGHQAEEVEQSLAHL----P-GLEFV 71 (450)
T ss_pred ceEEEEeCC--CCccCCC---CCChhcCEECChhHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhccc----C-CeEEE
Confidence 679999999 9999987 789999999999999999999975 4444444444577777532 1 34455
Q ss_pred cCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCC
Q 016989 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDT 161 (379)
Q Consensus 84 ~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~ 161 (379)
.+....|++++++.++++++.. .+++++++||.++ +.+++++++.|.+.+++++++..+. +++..|+.+..++ +
T Consensus 72 ~~~~~~G~~~sv~~~~~~l~~~-~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~--~~~~~~g~~~~d~-~ 147 (450)
T PRK14360 72 EQQPQLGTGHAVQQLLPVLKGF-EGDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARL--PNPKGYGRVFCDG-N 147 (450)
T ss_pred EeCCcCCcHHHHHHHHHHhhcc-CCcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEec--CCCCCccEEEECC-C
Confidence 5566789999999999888632 2469999999976 6789999999988888787766654 3567799888874 7
Q ss_pred CcEEEeeecCC----CcccceeeeeEEEeCHhhHH-Hhhccccccccchhhhhcchhhhhhhhccccccccccccccccc
Q 016989 162 NELLHYTEKPE----TFVSDLINCGVYVFTPDIFN-AIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILS 236 (379)
Q Consensus 162 ~~v~~~~ekp~----~~~~~~~~~Giy~~~~~~l~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~ 236 (379)
++|..+.|||. ...+++.++|+|+|+++.|. ++++........++ +. +|.++
T Consensus 148 g~v~~~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~--------------------~~---td~i~ 204 (450)
T PRK14360 148 NLVEQIVEDRDCTPAQRQNNRINAGIYCFNWPALAEVLPKLSSNNDQKEY--------------------YL---TDTVS 204 (450)
T ss_pred CCEEEEEECCCCChhHhcCcEEEEEEEEEEHHHHHHHHhhccccccCCce--------------------eH---HHHHH
Confidence 89999999974 23467899999999987764 44443322111111 11 45555
Q ss_pred cccCCceEEEEEcccch--hhcCCccchhhcchHHHH
Q 016989 237 PLAGKKQLYTYETMDFW--EQIKTPGMSLKCSGLYLA 271 (379)
Q Consensus 237 ~l~~~~~v~~~~~~~~w--~~i~t~~d~~~a~~~~l~ 271 (379)
.+. .+..+.+.++| ..+++++++..+..++..
T Consensus 205 ~~~---~~~~~~v~~~~~~~~i~~~~dl~~~~~~l~~ 238 (450)
T PRK14360 205 LLD---PVMAVEVEDYQEINGINDRKQLAQCEEILQN 238 (450)
T ss_pred HHh---hceEEecCCHHHhhcCCCHHHHHHHHHHHHH
Confidence 552 35666666665 459999999988766544
No 36
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=100.00 E-value=1.9e-33 Score=254.86 Aligned_cols=221 Identities=23% Similarity=0.417 Sum_probs=179.4
Q ss_pred EEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcc---cCCc---
Q 016989 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISN---ELRI--- 78 (379)
Q Consensus 10 ~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~---~~~~--- 78 (379)
+||||||| .|+||+|+|..+||||+||+|+|||+|+++.+.+ |+|++++..+.+.+|+++... .+.+
T Consensus 1 kavilaaG--~gtRl~~~t~~~pK~llpv~g~pii~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 78 (254)
T TIGR02623 1 KAVILAGG--LGTRISEETHLRPKPMVEIGGKPILWHIMKIYSHHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMA 78 (254)
T ss_pred CEEEEcCc--cccccCccccCCCcceeEECCEEHHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEec
Confidence 58999999 9999999999999999999999999999999976 666666666678888875321 1111
Q ss_pred --------------cEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEe
Q 016989 79 --------------PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKV 144 (379)
Q Consensus 79 --------------~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~ 144 (379)
.+.+..+...+||+++++.+++++.+ ++|++++||++++.|+.++++.|.+.++++|+++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~al~~~~~~i~~---e~flv~~gD~i~~~dl~~~~~~h~~~~~d~tl~~~~- 154 (254)
T TIGR02623 79 DNTMEVHHKRVEPWRVTLVDTGESTQTGGRLKRVREYLDD---EAFCFTYGDGVADIDIKALIAFHRKHGKKATVTAVQ- 154 (254)
T ss_pred ccccccccccCCccceeeeecCCcCCcHHHHHHHHHhcCC---CeEEEEeCCeEecCCHHHHHHHHHHcCCCEEEEEec-
Confidence 12233444668999999999999862 469999999999999999999999988988877543
Q ss_pred CCCCCCceeEEEEeCCCCcEEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccc
Q 016989 145 SAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLT 224 (379)
Q Consensus 145 ~~~~~~~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (379)
++..||.+..| +++|..|.|||... +.++++|+|+|++++|+.+.+..
T Consensus 155 ---~~~~yG~v~~d--~~~V~~~~Ekp~~~-~~~i~~Giyi~~~~il~~l~~~~-------------------------- 202 (254)
T TIGR02623 155 ---PPGRFGALDLE--GEQVTSFQEKPLGD-GGWINGGFFVLNPSVLDLIDGDA-------------------------- 202 (254)
T ss_pred ---CCCcccEEEEC--CCeEEEEEeCCCCC-CCeEEEEEEEEcHHHHhhccccC--------------------------
Confidence 46789998887 35899999998643 67899999999999998776421
Q ss_pred cccccccccccccccCCceEEEEEcccchhhcCCccchhhcchHHHH
Q 016989 225 TDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLA 271 (379)
Q Consensus 225 ~~~~~l~~d~l~~l~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~l~ 271 (379)
.++ ..|+++.++++.++.+|.++|+|.++|||++|.+++.++.+
T Consensus 203 ~~~---~~d~i~~l~~~~~v~~~~~~g~w~dIgt~~~~~~~~~~~~~ 246 (254)
T TIGR02623 203 TVW---EQEPLETLAQRGELSAYEHSGFWQPMDTLRDKNYLEELWES 246 (254)
T ss_pred chh---hhhHHHHHHhCCCEEEEeCCCEEecCCchHHHHHHHHHHHc
Confidence 111 16888888888899999999999999999999999876653
No 37
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=100.00 E-value=3.7e-33 Score=257.70 Aligned_cols=230 Identities=22% Similarity=0.295 Sum_probs=185.3
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccC-----
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNEL----- 76 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~----- 76 (379)
+.|+||||||| .|+||+|+|..+||+|+|++|+|+|+|+++++.+ |+|++++..+.+.+|++.. ..+
T Consensus 7 ~~~~aiIlaaG--~g~Rl~~~t~~~pK~l~pv~g~pii~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~-~~~~~~l~ 83 (302)
T PRK13389 7 KVKKAVIPVAG--LGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTS-FELEAMLE 83 (302)
T ss_pred cceEEEEECCc--CCccCCCccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHccc-hhhhhhhh
Confidence 46899999999 9999999999999999999999999999999986 6677776667789998642 111
Q ss_pred -----------------CccEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeec--------CChHHHHHHHH
Q 016989 77 -----------------RIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS--------FPLPEMLDAHR 131 (379)
Q Consensus 77 -----------------~~~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~--------~dl~~~l~~~~ 131 (379)
+..+.+..+....|++++++.+.+++.+ ++|++++||++++ .++.++++.|.
T Consensus 84 ~~~~~~~~~e~~~i~~~~~~i~~~~q~~~~Gtg~Av~~a~~~~~~---~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~ 160 (302)
T PRK13389 84 KRVKRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVGD---EPVAVILPDVILDEYESDLSQDNLAEMIRRFD 160 (302)
T ss_pred hhhhhHHHHhhhhccccCceEEEeecCCCCChHHHHHHHHHHcCC---CCEEEEeCcceecccccccccccHHHHHHHHH
Confidence 2345566677789999999999998753 3599999999984 69999999998
Q ss_pred hcCCceEEEEEEeCCCCCCceeEEEEeC------CCCcEEEeeecCC--CcccceeeeeEEEeCHhhHHHhhcccccccc
Q 016989 132 NYGGMGTILVIKVSAESASQFGELVADP------DTNELLHYTEKPE--TFVSDLINCGVYVFTPDIFNAIQGVSSQRKD 203 (379)
Q Consensus 132 ~~~~~~ti~~~~~~~~~~~~~g~v~~d~------~~~~v~~~~ekp~--~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~ 203 (379)
+.+++ ++++.+. +++..||.+..+. ++++|..+.|||. ...++++++|+|+|++++|+.+++..+. .+
T Consensus 161 ~~~~~-tl~~~~~--~~~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~~~s~~~~~GiYi~~~~il~~l~~~~~~-~~ 236 (302)
T PRK13389 161 ETGHS-QIMVEPV--ADVTAYGVVDCKGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIWPLLAKTPPG-AG 236 (302)
T ss_pred hcCCC-EEEEEEc--ccCCcceEEEecCcccccCCcceEEEEEECCCCCCCCccEEEEEEEEECHHHHHHHHhCCCC-CC
Confidence 88775 6777665 4678999998752 1357999999997 3457899999999999999988754321 11
Q ss_pred chhhhhcchhhhhhhhccccccccccccccccccccCCceEEEEEcccchhhcCCccchhhcchHH
Q 016989 204 RENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLY 269 (379)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~ 269 (379)
+++ + + .|+++.++++.++.+|.++|+|.|+|||++|++|+..+
T Consensus 237 ~e~--------------------~--l-~d~i~~l~~~~~v~~~~~~G~w~DIGtpe~~~~a~~~~ 279 (302)
T PRK13389 237 DEI--------------------Q--L-TDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEY 279 (302)
T ss_pred Cee--------------------e--H-HHHHHHHHHcCCEEEEEeeeEEEeCCCHHHHHHHHHHH
Confidence 111 1 1 68888888888999999999999999999999997554
No 38
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=100.00 E-value=2.3e-33 Score=255.88 Aligned_cols=227 Identities=25% Similarity=0.330 Sum_probs=178.9
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcc---------
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISN--------- 74 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~--------- 74 (379)
|+||||||| .|+||+|+|..+||||+|++|+|||+|+++++.+ ++|++++..+++.+|++....
T Consensus 1 m~avIlAaG--~gtRl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~~ 78 (260)
T TIGR01099 1 RKAVIPAAG--LGTRFLPATKAIPKEMLPIVDKPLIQYVVEEAVEAGIEDILIVTGRGKRAIEDHFDTSYELEHQLEKRG 78 (260)
T ss_pred CeEEEEccc--CcccCCCcccCCCceeEEECCEEHHHHHHHHHHhCCCCEEEEEeCCcHHHHHHHhcccHHHHHHHHhhh
Confidence 689999999 9999999999999999999999999999999986 677777666779998863100
Q ss_pred -----------cCCccEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeec-C--ChHHHHHHHHhcCCceEEE
Q 016989 75 -----------ELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS-F--PLPEMLDAHRNYGGMGTIL 140 (379)
Q Consensus 75 -----------~~~~~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~-~--dl~~~l~~~~~~~~~~ti~ 140 (379)
.....+.+..+....|++++++.+++++.+ +.|++++||.++. . ++.++++.|.++++++ ++
T Consensus 79 ~~~~~~~~~~~~~~~~i~~~~~~~~~G~~~al~~~~~~~~~---~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~i-i~ 154 (260)
T TIGR01099 79 KEELLKEVRSISPLATIFYVRQKEQKGLGHAVLCAEPFVGD---EPFAVILGDDIVVSEEPALKQMIDLYEKYGCSI-IA 154 (260)
T ss_pred hHHHHHHhhhccccceEEEEecCCCCCHHHHHHHHHHhhCC---CCEEEEeccceecCCcHHHHHHHHHHHHhCCCE-EE
Confidence 001345566667789999999999998843 3699999999994 3 7999999998888765 55
Q ss_pred EEEeCCCCCCceeEEEEeC---CCCcEEEeeecCC--CcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhh
Q 016989 141 VIKVSAESASQFGELVADP---DTNELLHYTEKPE--TFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEA 215 (379)
Q Consensus 141 ~~~~~~~~~~~~g~v~~d~---~~~~v~~~~ekp~--~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 215 (379)
+...+..++..||.+..+. ++++|..+.|||. ...++++++|+|+|++++|+.+.....+. .+++
T Consensus 155 ~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~-~~~~--------- 224 (260)
T TIGR01099 155 VEEVPKEEVSKYGVIDGEGVEEGLYEIKDMVEKPKPEEAPSNLAIVGRYVLTPDIFDLLEETPPGA-GGEI--------- 224 (260)
T ss_pred EEECChhhcccCceEEeccccCCceeEEEEEECCCCCCCCCceEEEEEEECCHHHHHHHHhCCCCC-CCce---------
Confidence 5555445678999988862 2369999999984 34567899999999999998886432211 1111
Q ss_pred hhhhccccccccccccccccccccCCceEEEEEcccchhhcCCccchhhc
Q 016989 216 LQSATRNLTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKC 265 (379)
Q Consensus 216 ~~~~~~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~~~w~~i~t~~d~~~a 265 (379)
+ + .|+++.++++.++++|+++|+|.|+|||++|++|
T Consensus 225 -----------~--l-~d~i~~l~~~~~v~~~~~~g~w~digs~~~y~~a 260 (260)
T TIGR01099 225 -----------Q--L-TDALRKLLEKETVYAYKFKGKRYDCGSKLGYLKA 260 (260)
T ss_pred -----------e--H-HHHHHHHHhcCCEEEEEcceEEEeCCCHHHHhhC
Confidence 1 1 5788888877899999999999999999999875
No 39
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=100.00 E-value=3.1e-33 Score=255.92 Aligned_cols=231 Identities=24% Similarity=0.319 Sum_probs=182.5
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcc------c--
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISN------E-- 75 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~------~-- 75 (379)
|+||||||| .|+||+|+|..+||||+|++|+|||+|+++++.+ |+|++++..+++.+|++.... .
T Consensus 1 mkaiIlAaG--~gtRl~plt~~~pK~llpv~gkpli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~ 78 (267)
T cd02541 1 RKAVIPAAG--LGTRFLPATKAIPKEMLPIVDKPVIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKG 78 (267)
T ss_pred CeEEEEcCC--CCccCCCcccCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhcc
Confidence 689999999 9999999999999999999999999999999986 667766666678888864210 0
Q ss_pred ------------CCccEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeec-C--ChHHHHHHHHhcCCceEEE
Q 016989 76 ------------LRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS-F--PLPEMLDAHRNYGGMGTIL 140 (379)
Q Consensus 76 ------------~~~~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~-~--dl~~~l~~~~~~~~~~ti~ 140 (379)
.+.++.++.++...|++++++.++++++. +.|++++||.++. . +++++++.|.+.+++ +++
T Consensus 79 ~~~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~~~~~i~~---~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~-~~~ 154 (267)
T cd02541 79 KTDLLEEVRIISDLANIHYVRQKEPLGLGHAVLCAKPFIGD---EPFAVLLGDDLIDSKEPCLKQLIEAYEKTGAS-VIA 154 (267)
T ss_pred cHHHhhhhhcccCCceEEEEEcCCCCChHHHHHHHHHHhCC---CceEEEECCeEEeCCchHHHHHHHHHHHhCCC-EEE
Confidence 13466677777789999999999999864 3599999999994 3 499999999877664 455
Q ss_pred EEEeCCCCCCceeEEEEeCC---CCcEEEeeecCC--CcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhh
Q 016989 141 VIKVSAESASQFGELVADPD---TNELLHYTEKPE--TFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEA 215 (379)
Q Consensus 141 ~~~~~~~~~~~~g~v~~d~~---~~~v~~~~ekp~--~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 215 (379)
+.+.+..++..||.+..|++ .++|..+.|||. ...+.++++|+|+|++++|+.+.+...+ ..++
T Consensus 155 ~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~-~~~e---------- 223 (267)
T cd02541 155 VEEVPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPKPEEAPSNLAIVGRYVLTPDIFDILENTKPG-KGGE---------- 223 (267)
T ss_pred EEEcChhcCccceEEEeecCCCCceEEeEEEECCCCCCCCCceEEEEEEEcCHHHHHHHHhCCCC-CCCc----------
Confidence 55554456788999988741 248999999986 3557889999999999999888652211 1111
Q ss_pred hhhhccccccccccccccccccccCCceEEEEEcccchhhcCCccchhhcchHH
Q 016989 216 LQSATRNLTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLY 269 (379)
Q Consensus 216 ~~~~~~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~ 269 (379)
+. + .++++.++++.++++|+++|+|.++|||++|++|+..+
T Consensus 224 -----------~~-~-~d~i~~l~~~~~v~~~~~~g~w~digt~~~y~~a~~~~ 264 (267)
T cd02541 224 -----------IQ-L-TDAIAKLLEEEPVYAYVFEGKRYDCGNKLGYLKATVEF 264 (267)
T ss_pred -----------EE-H-HHHHHHHHhcCCEEEEEeeeEEEeCCCHHHHHHHHHHH
Confidence 11 1 57888888777999999999999999999999998543
No 40
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=100.00 E-value=6.6e-33 Score=249.21 Aligned_cols=229 Identities=25% Similarity=0.428 Sum_probs=187.2
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEEEe
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~ 83 (379)
|+||||||| .|+||+|+|..+||+|+|++|+|||+|+++++.+ ++|++....+.+.++++.. ..++.++.++
T Consensus 1 m~avIlAaG--~g~Rl~plt~~~pK~l~~i~g~~li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~~-~~~~~~i~~~ 77 (236)
T cd04189 1 MKGLILAGG--KGTRLRPLTYTRPKQLIPVAGKPIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGDG-SRFGVRITYI 77 (236)
T ss_pred CeEEEECCC--ccccccccccCCCceeeEECCcchHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHhcch-hhcCCeEEEE
Confidence 689999999 9999999999999999999999999999999975 6666555666788888753 3466777777
Q ss_pred cCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCCCc
Q 016989 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNE 163 (379)
Q Consensus 84 ~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~~ 163 (379)
.+....|++++++.+.+++.. +++++++||++++.++.++++.|.+.++++++++.+.+ ++..|+.+..+ +++
T Consensus 78 ~~~~~~g~~~sl~~a~~~i~~---~~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~d--~~~ 150 (236)
T cd04189 78 LQEEPLGLAHAVLAARDFLGD---EPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVE--DPRRFGVAVVD--DGR 150 (236)
T ss_pred ECCCCCChHHHHHHHHHhcCC---CCEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEECC--CcccceEEEEc--CCe
Confidence 777788999999999998862 35999999999999999999999888888888888763 56778988877 459
Q ss_pred EEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccccC-Cc
Q 016989 164 LLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAG-KK 242 (379)
Q Consensus 164 v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~-~~ 242 (379)
|..+.|||......+.++|+|+|++++++.+....+... + .+. + .++++.+++ +.
T Consensus 151 v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~-~---------------------~~~-~-~d~~~~~i~~g~ 206 (236)
T cd04189 151 IVRLVEKPKEPPSNLALVGVYAFTPAIFDAISRLKPSWR-G---------------------ELE-I-TDAIQWLIDRGR 206 (236)
T ss_pred EEEEEECCCCCCCCEEEEEEEEeCHHHHHHHHhcCCCCC-C---------------------eEE-H-HHHHHHHHHcCC
Confidence 999999987666788999999999999988754322111 1 111 1 577777764 46
Q ss_pred eEEEEEcccchhhcCCccchhhcchHHHH
Q 016989 243 QLYTYETMDFWEQIKTPGMSLKCSGLYLA 271 (379)
Q Consensus 243 ~v~~~~~~~~w~~i~t~~d~~~a~~~~l~ 271 (379)
+|.+|+++++|.++|||++|.+++..++.
T Consensus 207 ~v~~~~~~~~~~~i~t~~dl~~a~~~~l~ 235 (236)
T cd04189 207 RVGYSIVTGWWKDTGTPEDLLEANRLLLD 235 (236)
T ss_pred cEEEEEcCceEEeCCCHHHHHHHHHHHHh
Confidence 79999999999999999999999877653
No 41
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=100.00 E-value=2.6e-32 Score=242.88 Aligned_cols=213 Identities=18% Similarity=0.308 Sum_probs=176.5
Q ss_pred EEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEEEec
Q 016989 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLR 84 (379)
Q Consensus 10 ~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~ 84 (379)
+||||||| .|+||+|+|+.+||||+|++|+|||+|+++++.+ |+|++++..+.+.+|+.. ..+++.+.+..
T Consensus 1 kaiIlaaG--~g~Rl~plt~~~pK~llpi~g~~li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~--~~~~~~i~~~~ 76 (221)
T cd06422 1 KAMILAAG--LGTRMRPLTDTRPKPLVPVAGKPLIDHALDRLAAAGIRRIVVNTHHLADQIEAHLGD--SRFGLRITISD 76 (221)
T ss_pred CEEEEcCC--CCCccccccCCCCCceeeECCEEHHHHHHHHHHHCCCCEEEEEccCCHHHHHHHHhc--ccCCceEEEec
Confidence 58999999 9999999999999999999999999999999986 777777766779999875 34677787776
Q ss_pred CC-CCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHH--hcCCceEEEEEEeCCCCCCceeEEEEeCCC
Q 016989 85 ED-KPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHR--NYGGMGTILVIKVSAESASQFGELVADPDT 161 (379)
Q Consensus 85 ~~-~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~--~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~ 161 (379)
+. +..|++++++.+++++.+ ++|++++||++++.++.++++.|. +.++.+++...+. +....||.+..++ +
T Consensus 77 ~~~~~~g~~~~l~~~~~~~~~---~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~v~~d~-~ 150 (221)
T cd06422 77 EPDELLETGGGIKKALPLLGD---EPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRN--PGHNGVGDFSLDA-D 150 (221)
T ss_pred CCCcccccHHHHHHHHHhcCC---CCEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEc--CCCCCcceEEECC-C
Confidence 65 678999999999999864 369999999999999999999997 4555566655554 3567889888884 6
Q ss_pred CcEEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccccCC
Q 016989 162 NELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK 241 (379)
Q Consensus 162 ~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~ 241 (379)
++|..+.+||. ..+.++|+|+|+++++..+.+. ++ . + .++++.++++
T Consensus 151 ~~v~~~~~~~~---~~~~~~Giyi~~~~~l~~l~~~-------~~-------------------~---~-~d~~~~l~~~ 197 (221)
T cd06422 151 GRLRRGGGGAV---APFTFTGIQILSPELFAGIPPG-------KF-------------------S---L-NPLWDRAIAA 197 (221)
T ss_pred CcEeecccCCC---CceEEEEEEEEcHHHHhhCCcC-------cc-------------------c---H-HHHHHHHHHc
Confidence 89999999875 3789999999999999877531 00 0 1 5777878777
Q ss_pred ceEEEEEcccchhhcCCccchhhc
Q 016989 242 KQLYTYETMDFWEQIKTPGMSLKC 265 (379)
Q Consensus 242 ~~v~~~~~~~~w~~i~t~~d~~~a 265 (379)
.++.+|.++|+|.+++||++|.+|
T Consensus 198 ~~~~~~~~~g~w~di~t~~~~~~a 221 (221)
T cd06422 198 GRLFGLVYDGLWFDVGTPERLLAA 221 (221)
T ss_pred CCeEEEecCCEEEcCCCHHHHhhC
Confidence 889999999999999999999865
No 42
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=99.98 E-value=2.6e-31 Score=236.53 Aligned_cols=217 Identities=29% Similarity=0.472 Sum_probs=178.4
Q ss_pred EEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEEEecC
Q 016989 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLRE 85 (379)
Q Consensus 11 aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~~ 85 (379)
||||||| .|+||+|+|...||+|+|++|+|||+|+++.+.+ |+|++.+..+.+.+++... ..++.++.+..+
T Consensus 1 aiIlaaG--~g~R~~~~t~~~pK~ll~i~g~pli~~~l~~l~~~g~~~v~vv~~~~~~~i~~~~~~~-~~~~~~~~~~~~ 77 (223)
T cd06915 1 AVILAGG--LGTRLRSVVKDLPKPLAPVAGRPFLEYLLEYLARQGISRIVLSVGYLAEQIEEYFGDG-YRGGIRIYYVIE 77 (223)
T ss_pred CEEecCC--cccccCcccCCCCccccEECCcchHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHcCc-cccCceEEEEEC
Confidence 6999999 9999999999999999999999999999999976 6666665556688888642 224566666666
Q ss_pred CCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCCCcEE
Q 016989 86 DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELL 165 (379)
Q Consensus 86 ~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~~v~ 165 (379)
....|++++++.+++.+.. +++++++||++++.++.++++.|.+.++++++++.+.. ++..|+.+..++ +++|.
T Consensus 78 ~~~~G~~~~l~~a~~~~~~---~~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~v~~d~-~~~v~ 151 (223)
T cd06915 78 PEPLGTGGAIKNALPKLPE---DQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVP--DASRYGNVTVDG-DGRVI 151 (223)
T ss_pred CCCCcchHHHHHHHhhcCC---CCEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEECC--CCCcceeEEECC-CCeEE
Confidence 6788999999999998843 46999999999999999999999888888888887763 457888888874 68999
Q ss_pred EeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccccCCceEE
Q 016989 166 HYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQLY 245 (379)
Q Consensus 166 ~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~v~ 245 (379)
.+.+||......+.++|+|+|++++|+.+..... .+ ..++++.++++.++.
T Consensus 152 ~~~ek~~~~~~~~~~~Giy~~~~~~l~~~~~~~~--------------------------~~---~~~~~~~l~~~~~v~ 202 (223)
T cd06915 152 AFVEKGPGAAPGLINGGVYLLRKEILAEIPADAF--------------------------SL---EADVLPALVKRGRLY 202 (223)
T ss_pred EEEeCCCCCCCCcEEEEEEEECHHHHhhCCccCC--------------------------Ch---HHHHHHHHHhcCcEE
Confidence 9999987656788999999999999987753210 01 156777777666999
Q ss_pred EEEcccchhhcCCccchhhc
Q 016989 246 TYETMDFWEQIKTPGMSLKC 265 (379)
Q Consensus 246 ~~~~~~~w~~i~t~~d~~~a 265 (379)
+|+++++|.+|+|++||.+|
T Consensus 203 ~~~~~~~~~dI~t~~dl~~a 222 (223)
T cd06915 203 GFEVDGYFIDIGIPEDYARA 222 (223)
T ss_pred EEecCCeEEecCCHHHHHhh
Confidence 99999999999999999876
No 43
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=99.98 E-value=3.7e-31 Score=240.14 Aligned_cols=221 Identities=25% Similarity=0.440 Sum_probs=177.3
Q ss_pred EEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhccc-CCccEE---
Q 016989 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNE-LRIPVR--- 81 (379)
Q Consensus 11 aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~-~~~~i~--- 81 (379)
||||||| .|+||+|+|..+||||+|++|+|||+|+++.+.+ |+|++.+..+.+++|+++..+. .++++.
T Consensus 1 aiilaaG--~g~Rl~plt~~~pK~llpv~~~p~i~~~~~~~~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 78 (253)
T cd02524 1 VVILAGG--LGTRLSEETELKPKPMVEIGGRPILWHIMKIYSHYGHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGT 78 (253)
T ss_pred CEEEecC--CccccCCccCCCCceEEEECCEEHHHHHHHHHHhCCCceEEEECCCCHHHHHHHHHhhhhhcCceeEeecc
Confidence 6999999 9999999999999999999999999999999986 6666665666799998764211 111111
Q ss_pred ----Eec------------CCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeC
Q 016989 82 ----YLR------------EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVS 145 (379)
Q Consensus 82 ----~~~------------~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~ 145 (379)
+.. +...+|++++++.+++++.++ ++|++++||++++.++.++++.|...++++|+++..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~~~--~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~~-- 154 (253)
T cd02524 79 NRIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLGDD--ETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVH-- 154 (253)
T ss_pred cceeeecccccccceeecccCcccccHHHHHHHHHhcCCC--CeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEec--
Confidence 111 223577999999999998642 469999999999999999999999888888887653
Q ss_pred CCCCCceeEEEEeCCCCcEEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhcccccc
Q 016989 146 AESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTT 225 (379)
Q Consensus 146 ~~~~~~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (379)
.+..|+.+..++ +++|..+.|||... +.++++|+|+|++++++.+.+. . .
T Consensus 155 --~~~~~g~v~~d~-~g~V~~~~ekp~~~-~~~i~~Giyi~~~~l~~~l~~~-----~---------------------~ 204 (253)
T cd02524 155 --PPGRFGELDLDD-DGQVTSFTEKPQGD-GGWINGGFFVLEPEVFDYIDGD-----D---------------------T 204 (253)
T ss_pred --CCCcccEEEECC-CCCEEEEEECCCCC-CceEEEEEEEECHHHHHhhccc-----c---------------------c
Confidence 357889888885 68999999998754 5689999999999999887642 0 0
Q ss_pred ccccccccccccccCCceEEEEEcccchhhcCCccchhhcchHHH
Q 016989 226 DFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYL 270 (379)
Q Consensus 226 ~~~~l~~d~l~~l~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~l 270 (379)
++ ..++++.++++.++.+|+++|+|.+|+|+++|.++..++.
T Consensus 205 ~~---~~d~l~~li~~~~v~~~~~~g~w~~I~t~~~~~~~~~~~~ 246 (253)
T cd02524 205 VF---EREPLERLAKDGELMAYKHTGFWQCMDTLRDKQTLEELWN 246 (253)
T ss_pred hh---hHHHHHHHHhcCCEEEEecCCEEEeCcCHHHHHHHHHHHH
Confidence 11 1678888888889999999999999999999999987664
No 44
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=99.97 E-value=6.5e-31 Score=233.06 Aligned_cols=212 Identities=32% Similarity=0.576 Sum_probs=176.8
Q ss_pred EEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEEEecC
Q 016989 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLRE 85 (379)
Q Consensus 11 aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~~ 85 (379)
||||||| .|+||+|+|..+||+|+|++|+|||+|+++.+.. ++|++++..+.+.+++... ..++.++.++.+
T Consensus 1 aiIlaaG--~g~R~~~~t~~~pK~ll~v~g~pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~-~~~~~~i~~~~~ 77 (217)
T cd04181 1 AVILAAG--KGTRLRPLTDTRPKPLLPIAGKPILEYIIERLARAGIDEIILVVGYLGEQIEEYFGDG-SKFGVNIEYVVQ 77 (217)
T ss_pred CEEecCC--ccccccccccCCCccccEECCeeHHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcCh-hhcCceEEEEeC
Confidence 6999999 9999999999999999999999999999999976 6666665556688888653 235677777776
Q ss_pred CCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCCCcEE
Q 016989 86 DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELL 165 (379)
Q Consensus 86 ~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~~v~ 165 (379)
....|++++++.+++.+.. ++|++++||++++.++.++++.|.++++++++++.+.+ ++..|+.+..++ +++|.
T Consensus 78 ~~~~g~~~al~~~~~~~~~---~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~d~-~~~v~ 151 (217)
T cd04181 78 EEPLGTAGAVRNAEDFLGD---DDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVE--DPSRYGVVELDD-DGRVT 151 (217)
T ss_pred CCCCccHHHHHHhhhhcCC---CCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcC--CCCcceEEEEcC-CCcEE
Confidence 6778999999999998832 46999999999999999999999998988999988764 678899988885 68999
Q ss_pred EeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccccCCceEE
Q 016989 166 HYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQLY 245 (379)
Q Consensus 166 ~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~v~ 245 (379)
.+.|||......+.++|+|+|++++++.+..... ++ ..+. .++++.++++.+++
T Consensus 152 ~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~---~~--------------------~~~~---~~~~~~l~~~~~v~ 205 (217)
T cd04181 152 RFVEKPTLPESNLANAGIYIFEPEILDYIPEILP---RG--------------------EDEL---TDAIPLLIEEGKVY 205 (217)
T ss_pred EEEECCCCCCCCEEEEEEEEECHHHHHhhhhcCC---cc--------------------cccH---HHHHHHHHhcCCEE
Confidence 9999987666789999999999999988865322 11 1121 68888888778999
Q ss_pred EEEcccchhhcC
Q 016989 246 TYETMDFWEQIK 257 (379)
Q Consensus 246 ~~~~~~~w~~i~ 257 (379)
+|+++|+|.++|
T Consensus 206 ~~~~~g~w~dig 217 (217)
T cd04181 206 GYPVDGYWLDIG 217 (217)
T ss_pred EEEcCCEEecCC
Confidence 999999999986
No 45
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.97 E-value=1.6e-30 Score=231.21 Aligned_cols=214 Identities=28% Similarity=0.513 Sum_probs=173.7
Q ss_pred EEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEEEecC
Q 016989 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLRE 85 (379)
Q Consensus 11 aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~~ 85 (379)
||||||| .|+||+|+|...||+|+|++|+|||+|+++.+.. ++|++++..+.+.+|+.+. ..++.++.++.+
T Consensus 1 ~vIlaaG--~g~R~~plt~~~pK~ll~~~g~pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~-~~~~~~i~~~~~ 77 (220)
T cd06426 1 VVIMAGG--KGTRLRPLTENTPKPMLKVGGKPILETIIDRFIAQGFRNFYISVNYLAEMIEDYFGDG-SKFGVNISYVRE 77 (220)
T ss_pred CEEecCC--CccccCcccCCCCCccCeECCcchHHHHHHHHHHCCCcEEEEECccCHHHHHHHHCCc-cccCccEEEEEC
Confidence 6999999 9999999999999999999999999999999986 6777776666788888752 345677777766
Q ss_pred CCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCCCcEE
Q 016989 86 DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELL 165 (379)
Q Consensus 86 ~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~~v~ 165 (379)
+.+.|+++++..+.+... ++|++++||.+++.++.++++.|...++++++++.+.. ....||.+..+ +++|.
T Consensus 78 ~~~~g~~~~l~~~~~~~~----~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~d--~~~v~ 149 (220)
T cd06426 78 DKPLGTAGALSLLPEKPT----DPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYE--VQVPYGVVETE--GGRIT 149 (220)
T ss_pred CCCCcchHHHHHHHhhCC----CCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcC--CCCcceEEEEC--CCEEE
Confidence 677899999987766542 35999999998899999999999888888888887653 44678888886 37999
Q ss_pred EeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccccCC-ceE
Q 016989 166 HYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK-KQL 244 (379)
Q Consensus 166 ~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~-~~v 244 (379)
.+.|||.. ..++++|+|+|++++++.+.+. +++ .+ +++++.++++ .++
T Consensus 150 ~~~ek~~~--~~~~~~Giy~~~~~~~~~i~~~------~~~----------------------~l-~~~~~~~i~~~~~i 198 (220)
T cd06426 150 SIEEKPTH--SFLVNAGIYVLEPEVLDLIPKN------EFF----------------------DM-PDLIEKLIKEGKKV 198 (220)
T ss_pred EEEECCCC--CCeEEEEEEEEcHHHHhhcCCC------CCc----------------------CH-HHHHHHHHHCCCcE
Confidence 99999764 5688999999999998877531 010 11 5677777654 579
Q ss_pred EEEEcccchhhcCCccchhhcc
Q 016989 245 YTYETMDFWEQIKTPGMSLKCS 266 (379)
Q Consensus 245 ~~~~~~~~w~~i~t~~d~~~a~ 266 (379)
.+|+++++|.+++||++|.+|+
T Consensus 199 ~~~~~~~~w~~igt~~dl~~a~ 220 (220)
T cd06426 199 GVFPIHEYWLDIGRPEDYEKAN 220 (220)
T ss_pred EEEEeCCeEEeCCCHHHHHhhC
Confidence 9999999999999999999874
No 46
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=3.5e-30 Score=223.84 Aligned_cols=235 Identities=22% Similarity=0.301 Sum_probs=193.1
Q ss_pred CCCceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhc------
Q 016989 5 EDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSIS------ 73 (379)
Q Consensus 5 ~~~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~------ 73 (379)
|++..+|||+||| .||||.|.|+..||-||||.+||+|+|+++.+.. |+++++.....+++|+....
T Consensus 1 ~~~irKAViPaAG--lGTRfLPATKaiPKEMLPIvdKP~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~s~ELE~~L 78 (291)
T COG1210 1 MMKIRKAVIPAAG--LGTRFLPATKAIPKEMLPIVDKPLIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTL 78 (291)
T ss_pred CCcccEEEEEccC--cccccccccccCchhhccccCchhHHHHHHHHHHcCCCEEEEEecCCcchHHHhCcCcHHHHHHH
Confidence 4567899999999 9999999999999999999999999999999986 66666666667888764210
Q ss_pred ------------cc--CCccEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecC---ChHHHHHHHHhcCCc
Q 016989 74 ------------NE--LRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSF---PLPEMLDAHRNYGGM 136 (379)
Q Consensus 74 ------------~~--~~~~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~---dl~~~l~~~~~~~~~ 136 (379)
++ -..++.|++|.++.|.++|++.|.+++.++ +|.|+.+|.++.. .++.+++.+.+.+.
T Consensus 79 ~~~~K~~~L~~v~~i~~~~~i~~vRQ~e~~GLGhAVl~A~~~vg~E---pFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~- 154 (291)
T COG1210 79 EKRGKRELLEEVRSIPPLVTISFVRQKEPLGLGHAVLCAKPFVGDE---PFAVLLPDDLVDSEKPCLKQMIELYEETGG- 154 (291)
T ss_pred HHhCHHHHHHHHHhcccCceEEEEecCCCCcchhHHHhhhhhcCCC---ceEEEeCCeeecCCchHHHHHHHHHHHhCC-
Confidence 00 135688999999999999999999999864 6999999999932 38889999988877
Q ss_pred eEEEEEEeCCCCCCceeEEE----EeCCCCcEEEeeecCC--CcccceeeeeEEEeCHhhHHHhhccccccccchhhhhc
Q 016989 137 GTILVIKVSAESASQFGELV----ADPDTNELLHYTEKPE--TFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRV 210 (379)
Q Consensus 137 ~ti~~~~~~~~~~~~~g~v~----~d~~~~~v~~~~ekp~--~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~ 210 (379)
.++++.+++..+.+.||++. .+..-.+|..+.|||. ..++++...|-|+|+|++|+.|++..+.. ++|. |+
T Consensus 155 svi~v~ev~~e~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~~APSnlai~GRYil~p~IFd~L~~~~~G~-ggEi--QL 231 (291)
T COG1210 155 SVIGVEEVPPEDVSKYGVIDPGEPVEKGVYKVKGMVEKPKPEEAPSNLAIVGRYVLTPEIFDILEETKPGA-GGEI--QL 231 (291)
T ss_pred cEEEEEECCHHHCcccceEecCccccCCeEEEEEEEECCCCCCCCcceeeeeeeecCHHHHHHHhhCCCCC-CCEe--eH
Confidence 57888888878899999887 3311148999999984 67899999999999999999999865432 2222 11
Q ss_pred chhhhhhhhccccccccccccccccccccCCceEEEEEcccchhhcCCccchhhcchHH
Q 016989 211 SSFEALQSATRNLTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLY 269 (379)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~ 269 (379)
+|.+..|++...+++|.+.|..+|+|++..|++|+..|
T Consensus 232 ---------------------TDai~~L~~~~~v~a~~~~GkryD~G~k~Gyi~a~v~~ 269 (291)
T COG1210 232 ---------------------TDAIKKLLKKEPVLAYVFEGKRYDCGSKLGYIKANVEF 269 (291)
T ss_pred ---------------------HHHHHHHHhhCcEEEEEecccEEccCCcccHHHHHHHH
Confidence 78888888889999999999999999999999998444
No 47
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.96 E-value=4.6e-28 Score=214.79 Aligned_cols=176 Identities=23% Similarity=0.439 Sum_probs=140.2
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCC-----c
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELR-----I 78 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~-----~ 78 (379)
++||||||| .|+||+|+|..+||||+||+|+|||+|+++++.+ |+|++.+..+.+++|+++.. .++ .
T Consensus 1 ~~aiIla~G--~g~Rl~plt~~~pK~llpi~g~piI~~~l~~l~~~Gi~~I~iv~~~~~~~i~~~l~~~~-~~~~~~~~~ 77 (217)
T cd04197 1 LQAVVLADS--FNRRFRPLTKEKPRCLLPLANVPLIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIEKSK-WSKPKSSLM 77 (217)
T ss_pred CeEEEEcCC--CcccccccccCCCceeeEECCEehHHHHHHHHHHCCCCeEEEEeCCCHHHHHHHHhhcc-ccccccCcc
Confidence 589999999 9999999999999999999999999999999986 66666666677999998642 222 3
Q ss_pred cEEEecCCCCCChHHHHHHH--HHhhccCCCCeEEEEcCCeeecCChHHHHHHHHh-----cCCceEEEEEEeCCCC---
Q 016989 79 PVRYLREDKPHGSAGALYNF--RDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRN-----YGGMGTILVIKVSAES--- 148 (379)
Q Consensus 79 ~i~~~~~~~~~g~~~al~~~--~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~-----~~~~~ti~~~~~~~~~--- 148 (379)
.+.+..+++..|++++++.. ...+. ++|++++||++++.|+.++++.|++ +++++|+++.+.+...
T Consensus 78 ~i~~~~~~~~~~~~~al~~~~~~~~~~----~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~~~~~~ 153 (217)
T cd04197 78 IVIIIMSEDCRSLGDALRDLDAKGLIR----GDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVLKEASPPHRTR 153 (217)
T ss_pred eEEEEeCCCcCccchHHHHHhhccccC----CCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEEEEEeCCCccccc
Confidence 46666666777888888653 33342 3599999999999999999999987 3788898888875332
Q ss_pred -CCceeEEEEeCCCCcEEEeeecCCCc--------------------ccceeeeeEEEeCHhhH
Q 016989 149 -ASQFGELVADPDTNELLHYTEKPETF--------------------VSDLINCGVYVFTPDIF 191 (379)
Q Consensus 149 -~~~~g~v~~d~~~~~v~~~~ekp~~~--------------------~~~~~~~Giy~~~~~~l 191 (379)
...++++..++++++|+.+.|||..+ .+++.++|+|+|+++++
T Consensus 154 ~~~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~~i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 154 RTGEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEVEIRHDLLDCHIDICSPDVL 217 (217)
T ss_pred cCCCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcEEEECCceecCEEEeCCCCC
Confidence 22367788876458999999997543 27899999999999874
No 48
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=99.95 E-value=1e-27 Score=214.50 Aligned_cols=221 Identities=21% Similarity=0.318 Sum_probs=162.0
Q ss_pred EEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEEEecC
Q 016989 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLRE 85 (379)
Q Consensus 11 aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~~ 85 (379)
||||||| .|+||+|+|..+||+|+|++|+|||+|+++.+.+ |+|++.+..+.+.+|++.. .++.+.+..+
T Consensus 1 aiIlAaG--~g~Rl~~lt~~~pK~l~~~~g~~li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~---~~~~~~~~~~ 75 (229)
T cd02523 1 AIILAAG--RGSRLRPLTEDRPKCLLEINGKPLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKKY---PNIKFVYNPD 75 (229)
T ss_pred CEEEecc--CccccchhhCCCCceeeeECCEEHHHHHHHHHHHCCCceEEEEeccCHHHHHHHHhcc---CCeEEEeCcc
Confidence 6999999 9999999999999999999999999999999986 6666665666788888642 3444444434
Q ss_pred CCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCCCcEE
Q 016989 86 DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELL 165 (379)
Q Consensus 86 ~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~~v~ 165 (379)
....|++++++.+++++. +++++++||++++. ++++.|.+.+++.++++.+........++....+ ++++.
T Consensus 76 ~~~~g~~~s~~~~~~~~~----~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~ 146 (229)
T cd02523 76 YAETNNIYSLYLARDFLD----EDFLLLEGDVVFDP---SILERLLSSPADNAILVDKKTKEWEDEYVKDLDD--AGVLL 146 (229)
T ss_pred hhhhCcHHHHHHHHHHcC----CCEEEEeCCEecCH---HHHHHHHcCCCCCeEEEccCcccccccceeeecC--ccceE
Confidence 446899999999999883 35999999999844 5677777778888888887433334455533332 36888
Q ss_pred EeeecCCCcc-cceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccccC--Cc
Q 016989 166 HYTEKPETFV-SDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAG--KK 242 (379)
Q Consensus 166 ~~~ekp~~~~-~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~--~~ 242 (379)
.+.+||.... ..+.++|+|+|++++++.+.+....... . ....+++ +++++.+++ +.
T Consensus 147 ~~~~k~~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~--------------~---~~~~~~~---~d~i~~l~~~~~~ 206 (229)
T cd02523 147 GIISKAKNLEEIQGEYVGISKFSPEDADRLAEALEELIE--------------A---GRVNLYY---EDALQRLISEEGV 206 (229)
T ss_pred eecccCCCcchhceEEEeEEEECHHHHHHHHHHHHHHHh--------------c---ccccccH---HHHHHHHHhhcCe
Confidence 9999886543 5688999999999998877643211100 0 0011222 688888776 45
Q ss_pred eEEEEEcccchhhcCCccchhhcc
Q 016989 243 QLYTYETMDFWEQIKTPGMSLKCS 266 (379)
Q Consensus 243 ~v~~~~~~~~w~~i~t~~d~~~a~ 266 (379)
.+..+.. ++|.++|++++|.+|+
T Consensus 207 ~v~~~~~-~~w~dI~~~ed~~~a~ 229 (229)
T cd02523 207 KVKDISD-GFWYEIDDLEDLERAE 229 (229)
T ss_pred eEEEcCC-CCEEEeCCHHHHHhhC
Confidence 5666666 8999999999998763
No 49
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.95 E-value=1.1e-26 Score=208.06 Aligned_cols=218 Identities=22% Similarity=0.360 Sum_probs=158.5
Q ss_pred EEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccch---HHHHHHHHhhcccCCccEEE
Q 016989 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEE---REFALYVSSISNELRIPVRY 82 (379)
Q Consensus 11 aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~---~~i~~~l~~~~~~~~~~i~~ 82 (379)
+|||||| +|+||+|+|..+||||+|++|+|||+|+++.+.. +++++.... ..+..++... ..++.+.+
T Consensus 1 ~iIlAaG--~g~Rl~plt~~~pK~ll~i~g~pli~~~l~~l~~~g~~~ivvv~~~~~~~~~~~~~~~~~~--~~~~~i~~ 76 (231)
T cd04183 1 IIIPMAG--LGSRFKKAGYTYPKPLIEVDGKPMIEWVIESLAKIFDSRFIFICRDEHNTKFHLDESLKLL--APNATVVE 76 (231)
T ss_pred CEEECCc--CCccccccCCCCCceeeEECCEEHHHHHHHhhhccCCceEEEEEChHHhhhhhHHHHHHHh--CCCCEEEE
Confidence 4899999 9999999999999999999999999999999986 444443211 1123333221 12344533
Q ss_pred ecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCCC
Q 016989 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN 162 (379)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~ 162 (379)
.+..+.|++++++.++..+..+ ++|++++||++++.++.++++.|.+.+.+.++++... ....|+.+..|+ ++
T Consensus 77 -~~~~~~g~~~~l~~a~~~l~~~--~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~v~~d~-~~ 149 (231)
T cd04183 77 -LDGETLGAACTVLLAADLIDND--DPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFS---SHPRWSYVKLDE-NG 149 (231)
T ss_pred -eCCCCCcHHHHHHHHHhhcCCC--CCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeC---CCCCeEEEEECC-CC
Confidence 3456889999999999988532 3699999999999999999998887777777666554 456799888885 78
Q ss_pred cEEEeeecCCCcccceeeeeEEEeCHh-hH-HHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccccC
Q 016989 163 ELLHYTEKPETFVSDLINCGVYVFTPD-IF-NAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAG 240 (379)
Q Consensus 163 ~v~~~~ekp~~~~~~~~~~Giy~~~~~-~l-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~ 240 (379)
+|..+.+|+. .+.+.++|+|+|+++ .| +.+.+...... .....++ + .++++.+++
T Consensus 150 ~v~~~~ek~~--~~~~~~~Giy~~~~~~~~~~~l~~~~~~~~-------------------~~~~~~~-~-~d~i~~~~~ 206 (231)
T cd04183 150 RVIETAEKEP--ISDLATAGLYYFKSGSLFVEAAKKMIRKDD-------------------SVNGEFY-I-SPLYNELIL 206 (231)
T ss_pred CEEEeEEcCC--CCCccEeEEEEECcHHHHHHHHHHHHhhcc-------------------cccCcEE-E-hHHHHHHHH
Confidence 9999988843 367899999999986 43 55543111000 0011111 1 578888775
Q ss_pred C-ceEEEEEc-ccchhhcCCccch
Q 016989 241 K-KQLYTYET-MDFWEQIKTPGMS 262 (379)
Q Consensus 241 ~-~~v~~~~~-~~~w~~i~t~~d~ 262 (379)
+ .+|.+|.+ +++|.++|||++|
T Consensus 207 ~g~~v~~~~~~~~~w~di~t~~dl 230 (231)
T cd04183 207 DGKKVGIYLIDKDDYHSFGTPEDL 230 (231)
T ss_pred cCCEEEEEEeccccEEEcCChHhc
Confidence 4 57999999 6899999999887
No 50
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=99.95 E-value=5.9e-27 Score=205.07 Aligned_cols=182 Identities=29% Similarity=0.531 Sum_probs=143.0
Q ss_pred EEEEecCCCCCCccCCCCCCCCCCCceeCCc-chhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCcc-----
Q 016989 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIP----- 79 (379)
Q Consensus 11 aVIla~G~~~gtRl~~lt~~~pK~llpi~g~-pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~----- 79 (379)
||||||| .|+||+|+|...||+|+|++|+ |||+|+++.+.. ++|++.+..+.+.+|+.+. ..++.+
T Consensus 1 avILAaG--~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~-~~~~~~~~~~~ 77 (200)
T cd02508 1 AIILAGG--EGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLNDHLGSG-KEWDLDRKNGG 77 (200)
T ss_pred CEEeCCC--CCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHhCC-CcccCCCCCCC
Confidence 6999999 9999999999999999999999 999999999986 6666666566688888753 334432
Q ss_pred EEEe------cCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCCCCCcee
Q 016989 80 VRYL------REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFG 153 (379)
Q Consensus 80 i~~~------~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g 153 (379)
+.+. .++...|++++++.+.+++.....++|++++||++++.++.++++.|.++++++|+++.
T Consensus 78 ~~~~~~~~~~~~~~~~Gta~al~~a~~~i~~~~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~----------- 146 (200)
T cd02508 78 LFILPPQQRKGGDWYRGTADAIYQNLDYIERSDPEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK----------- 146 (200)
T ss_pred EEEeCcccCCCCCcccCcHHHHHHHHHHHHhCCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh-----------
Confidence 2222 23567899999999999986422357999999999999999999999988877777654
Q ss_pred EEEEeCCCCcEEEeeecCCCcccceeeeeEEEeCHhhHH-Hhhccccccccchhhhhcchhhhhhhhccccccccccccc
Q 016989 154 ELVADPDTNELLHYTEKPETFVSDLINCGVYVFTPDIFN-AIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQ 232 (379)
Q Consensus 154 ~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 232 (379)
+++|+|+|++++|. .++.... .++ .++ .+
T Consensus 147 -------------------------~~~g~yi~~~~~~~~~l~~~~~--~~~--------------------~~~---~~ 176 (200)
T cd02508 147 -------------------------ASMGIYIFSKDLLIELLEEDAA--DGS--------------------HDF---GK 176 (200)
T ss_pred -------------------------hcCEEEEEEHHHHHHHHHHHhc--cCc--------------------chh---HH
Confidence 78999999999884 5554221 111 111 17
Q ss_pred cccccccCCceEEEEEcccchhhc
Q 016989 233 DILSPLAGKKQLYTYETMDFWEQI 256 (379)
Q Consensus 233 d~l~~l~~~~~v~~~~~~~~w~~i 256 (379)
|+++.++++.++++|.++|+|.|+
T Consensus 177 d~i~~l~~~~~v~~~~~~g~w~di 200 (200)
T cd02508 177 DIIPAMLKKLKIYAYEFNGYWADI 200 (200)
T ss_pred HHHHHHhccCcEEEEEeCCeEecC
Confidence 899999888899999999999986
No 51
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=99.93 E-value=5.5e-25 Score=201.25 Aligned_cols=235 Identities=19% Similarity=0.249 Sum_probs=159.7
Q ss_pred eEEEEEecCCCCCCccCCCCC-CCCCCCceeCC-cchhHHHHHhcCc------EEEEcccc-hHHHHHHHHhhcccCCcc
Q 016989 9 VVAVIMVGGPTKGTRFRPLSL-NIPKPLFPLGG-QPMVHHPISACKR------IYLVGFYE-EREFALYVSSISNELRIP 79 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~-~~pK~llpi~g-~pli~~~i~~l~~------iiv~~~~~-~~~i~~~l~~~~~~~~~~ 79 (379)
|++|||||| .||||+|+|+ .+||+|+|++| +|||+|+++++.. |+|+++.. ...+++++.. ....
T Consensus 1 m~~vILAgG--~GtRl~PlS~~~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~----~~~~ 74 (274)
T cd02509 1 IYPVILAGG--SGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPE----GLPE 74 (274)
T ss_pred CEEEEEccc--ccccCCcCCCCCCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhh----cCCC
Confidence 589999999 9999999996 79999999999 9999999999864 56665543 3346666653 1234
Q ss_pred EEEecCCCCCChHHHHHHHHHhhccC-CCCeEEEEcCCeeec--CChHHHHHHHHh---cCCceEEEEEEeCCCCCCcee
Q 016989 80 VRYLREDKPHGSAGALYNFRDLIMED-NPSHIFLLNCDVCCS--FPLPEMLDAHRN---YGGMGTILVIKVSAESASQFG 153 (379)
Q Consensus 80 i~~~~~~~~~g~~~al~~~~~~i~~~-~~~~~lv~~gD~i~~--~dl~~~l~~~~~---~~~~~ti~~~~~~~~~~~~~g 153 (379)
+.++.++...||++++..+...+... ..+.+++++||+++. .++.++++.+.+ .++.+|+.+.+. ...+.||
T Consensus 75 ~~ii~ep~~~gTa~ai~~a~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~p~--~~~t~yG 152 (274)
T cd02509 75 ENIILEPEGRNTAPAIALAALYLAKRDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVTFGIKPT--RPETGYG 152 (274)
T ss_pred ceEEECCCCCCcHHHHHHHHHHHHhcCCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEEEEeeec--CCCCCeE
Confidence 55666777899999999998887631 124799999999994 567777765543 566778777775 3458999
Q ss_pred EEEEeCCC-C---cEEEeeecCCCc--------ccceeeeeEEEeCHhh-HHHhhccccccccchhhhhcchhhhhhhhc
Q 016989 154 ELVADPDT-N---ELLHYTEKPETF--------VSDLINCGVYVFTPDI-FNAIQGVSSQRKDRENLRRVSSFEALQSAT 220 (379)
Q Consensus 154 ~v~~d~~~-~---~v~~~~ekp~~~--------~~~~~~~Giy~~~~~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (379)
++..+++. + +|.+|.|||+.. ...++|+|+|+|+++. ++.|.+..+.-..... .......
T Consensus 153 yI~~~~~~~~~~~~V~~f~EKP~~~~a~~~~~~g~~~wNsGiyi~~~~~l~~~l~~~~p~~~~~~~-------~~~~~~~ 225 (274)
T cd02509 153 YIEAGEKLGGGVYRVKRFVEKPDLETAKEYLESGNYLWNSGIFLFRAKTFLEELKKHAPDIYEALE-------KALAAAG 225 (274)
T ss_pred EEEeCCcCCCCceEEeEEEECcChHHHHHHhhcCCeEEECceeeeeHHHHHHHHHHHCHHHHHHHH-------HHHHhcC
Confidence 99987422 2 899999999742 1347899999999765 5676654432210000 0000000
Q ss_pred ccccccccccccccccc----------ccCCceEEEEEcccchhhcCCccc
Q 016989 221 RNLTTDFVRLDQDILSP----------LAGKKQLYTYETMDFWEQIKTPGM 261 (379)
Q Consensus 221 ~~~~~~~~~l~~d~l~~----------l~~~~~v~~~~~~~~w~~i~t~~d 261 (379)
..++..+..+.++. |.+..++.+.+.+..|-|+|++.+
T Consensus 226 ---~~~~~~~~~~~~~~~~~~sidyavme~~~~~~v~~~~~~W~D~G~w~~ 273 (274)
T cd02509 226 ---TDDFLRLLEEAFAKIPSISIDYAVMEKTKKVAVVPADFGWSDLGSWDA 273 (274)
T ss_pred ---CchhhhhhHHHHhhCCCcccchHhheeCCCcEEEecCCCcCcccCccc
Confidence 00010001122221 344567888898889999999865
No 52
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.93 E-value=1.1e-24 Score=192.93 Aligned_cols=177 Identities=26% Similarity=0.496 Sum_probs=136.5
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcc-----cCCc
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISN-----ELRI 78 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~-----~~~~ 78 (379)
|+||||||| .|+||+|+|...||+|+|++|+|||+|+++++.+ |+|++....+.+.+++....+ ..++
T Consensus 1 ~~avIlagg--~g~rl~plt~~~pK~llpv~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~v 78 (216)
T cd02507 1 FQAVVLADG--FGSRFLPLTSDIPKALLPVANVPLIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLLKSKWSSLSSKMIV 78 (216)
T ss_pred CeEEEEeCC--CccccCccccCCCcccceECCEEHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHhcccccccCCceE
Confidence 589999999 9999999999999999999999999999999985 666666666667778765321 1123
Q ss_pred cEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHH--HHhcCCceEEEEEEeCCCC-------C
Q 016989 79 PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDA--HRNYGGMGTILVIKVSAES-------A 149 (379)
Q Consensus 79 ~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~--~~~~~~~~ti~~~~~~~~~-------~ 149 (379)
.+.+..+....|++++++.+.+.+.+ +|++++||++++.++.++++. +...++++++++....... +
T Consensus 79 ~~~~~~~~~~~Gta~~l~~~~~~i~~----dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (216)
T cd02507 79 DVITSDLCESAGDALRLRDIRGLIRS----DFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLLASPPVSTEQSKKT 154 (216)
T ss_pred EEEEccCCCCCccHHHHHHHhhcCCC----CEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEeccCCCCccccccC
Confidence 34455556789999999999988854 499999999999999999965 4445566666655543222 5
Q ss_pred CceeEEEEeCCC--CcEEEeeecCCC------------------cccceeeeeEEEeCHhhH
Q 016989 150 SQFGELVADPDT--NELLHYTEKPET------------------FVSDLINCGVYVFTPDIF 191 (379)
Q Consensus 150 ~~~g~v~~d~~~--~~v~~~~ekp~~------------------~~~~~~~~Giy~~~~~~l 191 (379)
..++.+..|+++ .++..+.++++. ..+++.++|+|+|+++++
T Consensus 155 ~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~i~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 155 EEEDVIAVDSKTQRLLLLHYEEDLDEDLELIIRKSLLSKHPNVTIRTDLLDCHIYICSPDVL 216 (216)
T ss_pred CCCcEEEEcCCCCceEEEechhhcCcCcccccCHHHHhcCCCEEEEcCcccccEEEecCcCC
Confidence 677888888755 567777776542 247899999999999864
No 53
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=99.92 E-value=2.3e-24 Score=192.74 Aligned_cols=213 Identities=23% Similarity=0.394 Sum_probs=158.0
Q ss_pred EEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEEEecC
Q 016989 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLRE 85 (379)
Q Consensus 11 aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~~ 85 (379)
||||||| .|+||++ .+||+|+|++|+|||+|+++.+.+ ++++++...+.+.+++.. +++ .++.+
T Consensus 1 aiIlaaG--~g~R~~~---~~pK~l~~v~gkpli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~----~~~--~~~~~ 69 (229)
T cd02540 1 AVILAAG--KGTRMKS---DLPKVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHGAEQVKKALAN----PNV--EFVLQ 69 (229)
T ss_pred CEEEeCC--CCccCCC---CCChhcceeCCccHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCC----CCc--EEEEC
Confidence 6999999 9999997 789999999999999999999976 555555545557777753 233 34445
Q ss_pred CCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCCCc
Q 016989 86 DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNE 163 (379)
Q Consensus 86 ~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~~ 163 (379)
....|++++++.+++.++. ..+.|++++||.++ +.++.++++.|.+.++++++.+.+. .++..|+.+..++ +++
T Consensus 70 ~~~~g~~~ai~~a~~~~~~-~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~-~~~ 145 (229)
T cd02540 70 EEQLGTGHAVKQALPALKD-FEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAEL--EDPTGYGRIIRDG-NGK 145 (229)
T ss_pred CCCCCCHHHHHHHHHhhcc-CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEc--CCCCCccEEEEcC-CCC
Confidence 5668999999999998863 13579999999976 6789999999987777777777665 3567888877763 689
Q ss_pred EEEeeecCCCcc----cceeeeeEEEeCHhh-HHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccc
Q 016989 164 LLHYTEKPETFV----SDLINCGVYVFTPDI-FNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPL 238 (379)
Q Consensus 164 v~~~~ekp~~~~----~~~~~~Giy~~~~~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l 238 (379)
|..+.+||.... ..+.++|+|+|+++. ++.++.......+++ .+. .++++.+
T Consensus 146 v~~~~ek~~~~~~~~~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~--------------------~~~---~d~~~~~ 202 (229)
T cd02540 146 VLRIVEEKDATEEEKAIREVNAGIYAFDAEFLFEALPKLTNNNAQGE--------------------YYL---TDIIALA 202 (229)
T ss_pred EEEEEECCCCChHHHhhceEEeEEEEEEHHHHHHHHHHcccccCCCc--------------------EEH---HHHHHHH
Confidence 999999864322 368899999999764 566665432111111 111 6778777
Q ss_pred cC-CceEEEEEcccc--hhhcCCccc
Q 016989 239 AG-KKQLYTYETMDF--WEQIKTPGM 261 (379)
Q Consensus 239 ~~-~~~v~~~~~~~~--w~~i~t~~d 261 (379)
++ +.+|++|.++|+ |..+++|.+
T Consensus 203 ~~~g~~v~~~~~~~~~~~~~~~~~~~ 228 (229)
T cd02540 203 VADGLKVAAVLADDEEEVLGVNDRVQ 228 (229)
T ss_pred HHCCCEEEEEEcCCcceEecCCChHh
Confidence 75 468999999876 567788764
No 54
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.92 E-value=1.2e-24 Score=192.35 Aligned_cols=177 Identities=29% Similarity=0.503 Sum_probs=138.7
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEccc-chHHHHHHHHhhc--ccCCccE
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFY-EEREFALYVSSIS--NELRIPV 80 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~-~~~~i~~~l~~~~--~~~~~~i 80 (379)
|+||||||| .|+||+|+|...||+|+|++|+|||+|+++++.+ |+|++.. ....+++++.... ...+..+
T Consensus 1 ~~aVILAgG--~g~R~~plt~~~pK~Llpv~g~pli~~~l~~l~~~g~~~iivv~~~~~~~~i~~~l~~~~~~~~~~~~~ 78 (214)
T cd04198 1 FQAVILAGG--GGSRLYPLTDNIPKALLPVANKPMIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLRSFPLNLKQKLDE 78 (214)
T ss_pred CEEEEEeCC--CCCcCCccccCCCcccCEECCeeHHHHHHHHHHHCCCCeEEEEECHHHHHHHHHHHHhcccccCcceeE
Confidence 689999999 9999999999999999999999999999999986 6665554 3345777776532 1112334
Q ss_pred EEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCC-----------CC
Q 016989 81 RYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAE-----------SA 149 (379)
Q Consensus 81 ~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~-----------~~ 149 (379)
.+..+....|++++++.+.+.+.+ +|++++||.+++.++.++++.|++.++.+|+++++.... .+
T Consensus 79 ~~~~~~~~~gt~~al~~~~~~i~~----d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~ 154 (214)
T cd04198 79 VTIVLDEDMGTADSLRHIRKKIKK----DFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPPVSSEQKGGKGKSKKA 154 (214)
T ss_pred EEecCCCCcChHHHHHHHHhhcCC----CEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccCCcccccCCcccccCC
Confidence 455567789999999999988743 499999999999999999999999999999998875421 12
Q ss_pred CceeEEEEeCCCCcEEEeeec-----------------CC-CcccceeeeeEEEeCHhhH
Q 016989 150 SQFGELVADPDTNELLHYTEK-----------------PE-TFVSDLINCGVYVFTPDIF 191 (379)
Q Consensus 150 ~~~g~v~~d~~~~~v~~~~ek-----------------p~-~~~~~~~~~Giy~~~~~~l 191 (379)
..+.++..|+++++++.+... |+ .-.+++.++|+|+|+++++
T Consensus 155 ~~~~~~~~d~~~~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 155 DERDVIGLDEKTQRLLFITSEEDLDEDLELRKSLLKRHPRVTITTKLLDAHVYIFKRWVL 214 (214)
T ss_pred CCCceEEEcCCCCEEEEECCHHHhhhhhhHHHHHHHhCCCEEEEcCcccceEEEEEeeeC
Confidence 346677888767889888652 11 1248899999999998864
No 55
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.92 E-value=1.8e-23 Score=188.87 Aligned_cols=221 Identities=14% Similarity=0.172 Sum_probs=155.1
Q ss_pred ceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEEE
Q 016989 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (379)
Q Consensus 8 ~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~ 82 (379)
++.+|||||| .++|| + +|+|+|++|+|||+|+++.+.+ |+|+++. +.+.+++.. ++.++.+
T Consensus 2 ~~~~iIlA~g--~S~R~-~-----~K~Ll~i~Gkpll~~~l~~l~~~~i~~ivvv~~~--~~i~~~~~~----~~~~v~~ 67 (245)
T PRK05450 2 KFLIIIPARY--ASTRL-P-----GKPLADIGGKPMIVRVYERASKAGADRVVVATDD--ERIADAVEA----FGGEVVM 67 (245)
T ss_pred ceEEEEecCC--CCCCC-C-----CCcccccCCcCHHHHHHHHHHhcCCCeEEEECCc--HHHHHHHHH----cCCEEEE
Confidence 4789999999 99999 4 6999999999999999999975 6666553 336666643 3566656
Q ss_pred ecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeC----CCCCCceeEEE
Q 016989 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVS----AESASQFGELV 156 (379)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~----~~~~~~~g~v~ 156 (379)
..+....|++... .+...+.....+.+++++||+|+ ..++.++++.|..++++.++++.+.. ..++..++++
T Consensus 68 ~~~~~~~gt~~~~-~~~~~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~- 145 (245)
T PRK05450 68 TSPDHPSGTDRIA-EAAAKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPIHDAEEAFNPNVVKVV- 145 (245)
T ss_pred CCCcCCCchHHHH-HHHHhcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeecCCHHHhcCcCCCEEE-
Confidence 5555566776443 34444421112469999999977 56799999988776666666665542 1345667755
Q ss_pred EeCCCCcEEEeeecCCCc----------ccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccc
Q 016989 157 ADPDTNELLHYTEKPETF----------VSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTD 226 (379)
Q Consensus 157 ~d~~~~~v~~~~ekp~~~----------~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (379)
+++ +++|+.|.|||... .+.+.++|+|+|++++++.+.+....... ..+
T Consensus 146 ~d~-~g~v~~~~e~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~~~~~--------------------~~~ 204 (245)
T PRK05450 146 LDA-DGRALYFSRAPIPYGRDAFADSAPTPVYRHIGIYAYRRGFLRRFVSLPPSPLE--------------------KIE 204 (245)
T ss_pred eCC-CCcEEEecCCCCCCCCCccccccCccccEEEEEEecCHHHHHHHHhCCCCccc--------------------cch
Confidence 663 78999999997321 34899999999999999888753211100 000
Q ss_pred cccccccccccccCCceEEEEEccc-chhhcCCccchhhcchHH
Q 016989 227 FVRLDQDILSPLAGKKQLYTYETMD-FWEQIKTPGMSLKCSGLY 269 (379)
Q Consensus 227 ~~~l~~d~l~~l~~~~~v~~~~~~~-~w~~i~t~~d~~~a~~~~ 269 (379)
. .+.++.+.++.+++++..++ +|.++|+|+||.+|++.+
T Consensus 205 ~----~~~~~~~~~g~~v~~~~~~~~~w~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 205 S----LEQLRALENGYRIHVVVVEEAPSIGVDTPEDLERVRALL 244 (245)
T ss_pred h----HHHHHHHHCCCceEEEEeCCCCCCCcCCHHHHHHHHHHh
Confidence 0 12233445667899999986 899999999999997543
No 56
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.90 E-value=8.9e-23 Score=199.56 Aligned_cols=240 Identities=17% Similarity=0.260 Sum_probs=158.7
Q ss_pred eEEEEEecCCCCCCccCCCCCC-CCCCCceeCC-cchhHHHHHhcCc-----EEEEcccch-HHHHHHHHhhcccCCccE
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLN-IPKPLFPLGG-QPMVHHPISACKR-----IYLVGFYEE-REFALYVSSISNELRIPV 80 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~-~pK~llpi~g-~pli~~~i~~l~~-----iiv~~~~~~-~~i~~~l~~~~~~~~~~i 80 (379)
|.+|||||| .||||+|+|.. +||+|+|+.| +|||+|+++.+.. ++|+++... ..+.+.+.. ++.+.
T Consensus 1 ~~~vILAgG--~GtRl~PlS~~~~PK~~l~l~g~~~ll~~tl~~l~~~~~~~iviv~~~~~~~~~~~~l~~----~~~~~ 74 (468)
T TIGR01479 1 IIPVILAGG--SGTRLWPLSRELYPKQFLALVGDLTMLQQTLKRLAGLPCSSPLVICNEEHRFIVAEQLRE----IGKLA 74 (468)
T ss_pred CEEEEecCc--ccccCCccccCCCCCceeEcCCCCcHHHHHHHHHhcCCCcCcEEecCHHHHHHHHHHHHH----cCCCc
Confidence 579999999 99999999996 8999999977 8999999999975 555555322 234455543 33332
Q ss_pred -EEecCCCCCChHHHHHHHHHhhcc--CCCCeEEEEcCCeeec--CChHHHHHHH---HhcCCceEEEEEEeCCCCCCce
Q 016989 81 -RYLREDKPHGSAGALYNFRDLIME--DNPSHIFLLNCDVCCS--FPLPEMLDAH---RNYGGMGTILVIKVSAESASQF 152 (379)
Q Consensus 81 -~~~~~~~~~g~~~al~~~~~~i~~--~~~~~~lv~~gD~i~~--~dl~~~l~~~---~~~~~~~ti~~~~~~~~~~~~~ 152 (379)
.++.++...||+.++..+..++.. +..+.+++++||+++. .+|.++++.+ .+.++.+|+...+. ...+.|
T Consensus 75 ~~~i~Ep~~~gTa~ai~~aa~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtlgi~p~--~p~t~Y 152 (468)
T TIGR01479 75 SNIILEPVGRNTAPAIALAALLAARRNGEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVTFGIVPT--HPETGY 152 (468)
T ss_pred ceEEecccccCchHHHHHHHHHHHHHHCCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEEEEecCC--CCCCCc
Confidence 466778889999999887766632 1123599999999883 4588888865 34455566665543 345799
Q ss_pred eEEEEeC-----CCCcEEEeeecCCCcc--------cceeeeeEEEeCHhh-HHHhhccccccccchhhhhcchhhhhhh
Q 016989 153 GELVADP-----DTNELLHYTEKPETFV--------SDLINCGVYVFTPDI-FNAIQGVSSQRKDRENLRRVSSFEALQS 218 (379)
Q Consensus 153 g~v~~d~-----~~~~v~~~~ekp~~~~--------~~~~~~Giy~~~~~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 218 (379)
|++..++ +.++|..|.|||+... ..++|+|+|+|+++. ++.|.+..+.-... +. .++..
T Consensus 153 GyI~~~~~~~~~~~~~V~~f~EKP~~~~a~~~l~~g~~~wNsGif~~~~~~ll~~l~~~~p~~~~~-----~~--~~~~~ 225 (468)
T TIGR01479 153 GYIRRGEPLAGEDVYQVQRFVEKPDLATAQAYLESGDYYWNSGMFLFRASRYLAELKKHAPDIYEA-----CE--AAVEA 225 (468)
T ss_pred eEEEeCCccCCCCceEEeEEEECCChHHHHHHHhcCCeEEEeeEEEEEHHHHHHHHHHHCHHHHHH-----HH--HHHHh
Confidence 9999873 1258999999996421 368999999999654 56666544321100 00 00000
Q ss_pred hccccccccccccccccc---------c-ccCCceEEEEEcccchhhcCCccchhhc
Q 016989 219 ATRNLTTDFVRLDQDILS---------P-LAGKKQLYTYETMDFWEQIKTPGMSLKC 265 (379)
Q Consensus 219 ~~~~~~~~~~~l~~d~l~---------~-l~~~~~v~~~~~~~~w~~i~t~~d~~~a 265 (379)
.. .......+..+.++ . |.+..++.+.+.+..|.|+|+++++.+.
T Consensus 226 ~~--~~~~~~~~~~~~~~~~~~iSiDyavmEk~~~v~vv~~~~~W~DvGsw~~l~~~ 280 (468)
T TIGR01479 226 SE--PDLDFIRLDKEAFEQCPSESIDYAVMEKTADAVVVPMDAGWSDVGSWSALWEI 280 (468)
T ss_pred cc--CCcccceeCHHHHhhCcCCCeeeeeeEcCCcEEEEeCCCCccccCCHHHHHHh
Confidence 00 00000011122222 2 3445679999998899999999998865
No 57
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=99.89 E-value=2.6e-22 Score=180.65 Aligned_cols=217 Identities=18% Similarity=0.195 Sum_probs=150.5
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccchHHHHHHHHhhcccCCccEEE
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVRY 82 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~~~i~~~l~~~~~~~~~~i~~ 82 (379)
+.+|||||| .++||. ||+|+|++|+|||+|+++.+.+ |+|+++. +.+.+++.. +++++.+
T Consensus 2 ~~~iIlA~g--~s~R~~------~K~l~~i~gkpll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~~----~~~~~~~ 67 (239)
T cd02517 2 VIVVIPARY--ASSRLP------GKPLADIAGKPMIQHVYERAKKAKGLDEVVVATDD--ERIADAVES----FGGKVVM 67 (239)
T ss_pred EEEEEecCC--CCCCCC------CCCCcccCCcCHHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHHH----cCCEEEE
Confidence 579999999 999995 6999999999999999998864 5666553 346777653 3466655
Q ss_pred ecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhc-CCceEEEEEEeCC-C---CCCceeEE
Q 016989 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNY-GGMGTILVIKVSA-E---SASQFGEL 155 (379)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~-~~~~ti~~~~~~~-~---~~~~~g~v 155 (379)
..+....|+++ +..+.+.+.. ..+.+++++||+++ ..++..+++.|... ++++++++.+.+. . ....|+ +
T Consensus 68 ~~~~~~~gt~~-~~~~~~~~~~-~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v 144 (239)
T cd02517 68 TSPDHPSGTDR-IAEVAEKLDA-DDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPISDEEELFNPNVVK-V 144 (239)
T ss_pred cCcccCchhHH-HHHHHHhcCC-CCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEEcCCHHHccCCCCCE-E
Confidence 54555678874 6666666642 12579999999976 67799999988765 6778888777531 1 223334 4
Q ss_pred EEeCCCCcEEEeeecCCC-------cccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccc
Q 016989 156 VADPDTNELLHYTEKPET-------FVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFV 228 (379)
Q Consensus 156 ~~d~~~~~v~~~~ekp~~-------~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (379)
..++ +++|..|.++|.. +...+.++|+|+|++++++.+..... .++ +++ +.
T Consensus 145 ~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~~~~~~~~~~----~~~--~~~--------------~~- 202 (239)
T cd02517 145 VLDK-DGYALYFSRSPIPYPRDSSEDFPYYKHIGIYAYRRDFLLRFAALPP----SPL--EQI--------------ES- 202 (239)
T ss_pred EECC-CCCEEEecCCCCCCCCCCCCCCceeEEEEEEEECHHHHHHHHhCCC----chh--hhh--------------hh-
Confidence 5553 6789988875421 13678999999999999988764311 111 000 00
Q ss_pred cccccccccccCCceEEEEEcccchhhcCCccchhhcch
Q 016989 229 RLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSG 267 (379)
Q Consensus 229 ~l~~d~l~~l~~~~~v~~~~~~~~w~~i~t~~d~~~a~~ 267 (379)
-+++..+.++.+++++..+++|.++|||++|.+|++
T Consensus 203 ---~~~~~~~~~g~~v~~~~~~~~w~~i~t~~dl~~a~~ 238 (239)
T cd02517 203 ---LEQLRALENGYKIKVVETDHESIGVDTPEDLERVEA 238 (239)
T ss_pred ---HHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHh
Confidence 112222334567999999899999999999998864
No 58
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.89 E-value=1.7e-22 Score=173.04 Aligned_cols=224 Identities=16% Similarity=0.269 Sum_probs=147.2
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEc-ccchHHHHHHHHhhcccCCccE
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVG-FYEEREFALYVSSISNELRIPV 80 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~-~~~~~~i~~~l~~~~~~~~~~i 80 (379)
+.|+||||||| +|+||+| +.||||+.++|+|+|+|+|++|.+ +++++ .+..+.++.++.++. +..++
T Consensus 2 ~~~kavILAAG--~GsRlg~---~~PK~Lvev~gr~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~~~~--~~~~i 74 (239)
T COG1213 2 HPMKAVILAAG--FGSRLGP---DIPKALVEVGGREIIYRTIENLAKAGITEFVVVTNGYRADLVEEFLKKYP--FNAKI 74 (239)
T ss_pred CceeEEEEecc--cccccCC---CCCchhhhcCCeEeHHHHHHHHHHcCCceEEEEeccchHHHHHHHHhcCC--cceEE
Confidence 56899999999 9999999 999999999999999999999987 44444 455556888887532 23445
Q ss_pred EEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCC-hHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeC
Q 016989 81 RYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADP 159 (379)
Q Consensus 81 ~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~d-l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~ 159 (379)
.+.......+++.+|+.|.++++.. |++++||++++.. ++.+++ .++...++..+.....-..-..+..
T Consensus 75 v~N~~y~ktN~~~Sl~~akd~~~~~----fii~~sD~vye~~~~e~l~~----a~~~~li~d~~~~~~~~~ea~kv~~-- 144 (239)
T COG1213 75 VINSDYEKTNTGYSLLLAKDYMDGR----FILVMSDHVYEPSILERLLE----APGEGLIVDRRPRYVGVEEATKVKD-- 144 (239)
T ss_pred EeCCCcccCCceeEEeeehhhhcCc----EEEEeCCEeecHHHHHHHHh----CcCCcEEEeccccccccCceeEEEe--
Confidence 4554556667799999999999875 9999999999433 444444 3333333333321111112222333
Q ss_pred CCCcEEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccc-
Q 016989 160 DTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPL- 238 (379)
Q Consensus 160 ~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l- 238 (379)
++|++..+.++-. ..+..++|++.|+++++..+.+........ ++ .++.+..
T Consensus 145 e~G~i~~igK~l~--e~~~e~iGi~~l~~~i~~~~~~~~~e~~~~---------------------~~----~~~~~~~~ 197 (239)
T COG1213 145 EGGRIVEIGKDLT--EYDGEDIGIFILSDSIFEDTYELLVERSEY---------------------DY----REVEKEAG 197 (239)
T ss_pred cCCEEehhcCCcc--cccceeeeeEEechHHHHHHHHHHhhhhhH---------------------HH----HHHHHHhC
Confidence 3789999888744 456689999999999887766543211100 00 1122111
Q ss_pred cCCceEEEEEcccchhhcCCccchhhcchHHHHhhh
Q 016989 239 AGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFR 274 (379)
Q Consensus 239 ~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~l~~~~ 274 (379)
.....+.......+|.+++||+|+.+|.+.+...+.
T Consensus 198 ~~~~~~di~~~g~~w~EVDtpeDl~~ar~~~~~~~~ 233 (239)
T COG1213 198 LPFTEVDIHVDGLFWMEVDTPEDLERARKYLVPNIK 233 (239)
T ss_pred CceEEeeccccCceeEecCCHHHHHHHHHHHHHHHH
Confidence 111222222113579999999999999887776543
No 59
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.87 E-value=3.7e-21 Score=173.05 Aligned_cols=215 Identities=19% Similarity=0.232 Sum_probs=148.0
Q ss_pred ceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccchHHHHHHHHhhcccCCccEE
Q 016989 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVR 81 (379)
Q Consensus 8 ~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~~~i~~~l~~~~~~~~~~i~ 81 (379)
++.|||||+| .++|| | +|+|+|++|+|||+|+++.+.+ |+|+++. +.+.+++.. ++.++.
T Consensus 2 ~~~aiIlA~g--~s~R~-~-----~K~l~~i~GkPli~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~~----~~~~v~ 67 (238)
T PRK13368 2 KVVVVIPARY--GSSRL-P-----GKPLLDILGKPMIQHVYERAAQAAGVEEVYVATDD--QRIEDAVEA----FGGKVV 67 (238)
T ss_pred cEEEEEecCC--CCCCC-C-----CCccCccCCcCHHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHHH----cCCeEE
Confidence 4789999999 88998 4 5999999999999999998865 6666653 346777753 456665
Q ss_pred EecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCC-ceEEEEEEeCC--C--CCCceeE
Q 016989 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGG-MGTILVIKVSA--E--SASQFGE 154 (379)
Q Consensus 82 ~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~-~~ti~~~~~~~--~--~~~~~g~ 154 (379)
+..+....|++ .+..+.+.+. .+.|++++||+|+ +.++.++++.+...+. ++++++.+.+. . ++..++.
T Consensus 68 ~~~~~~~~g~~-~~~~a~~~~~---~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 143 (238)
T PRK13368 68 MTSDDHLSGTD-RLAEVMLKIE---ADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCAPISTEEEFESPNVVKV 143 (238)
T ss_pred ecCccCCCccH-HHHHHHHhCC---CCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEEEcCCHHHhcCcCCCEE
Confidence 55555556666 5666666653 2479999999987 7789999998876544 44445544321 1 2444444
Q ss_pred EEEeCCCCcEEEeeecCCC------cccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccc
Q 016989 155 LVADPDTNELLHYTEKPET------FVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFV 228 (379)
Q Consensus 155 v~~d~~~~~v~~~~ekp~~------~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (379)
..++ +|++..+.++|.. ....+.++|+|+|++++|+.+....... .+.
T Consensus 144 -~~~~-~g~v~~~~~~~~~~~~~~~~~~~~~n~giy~~~~~~l~~~~~~~~~~-----------------------~~~- 197 (238)
T PRK13368 144 -VVDK-NGDALYFSRSPIPSRRDGESARYLKHVGIYAFRRDVLQQFSQLPETP-----------------------LEQ- 197 (238)
T ss_pred -EECC-CCCEEEeeCCCCCCCCCCCCCceeEEEEEEEeCHHHHHHHHcCCCCh-----------------------hhh-
Confidence 4442 6899999865421 1144789999999999999875421100 000
Q ss_pred ccc-ccccccccCCceEEEEEcccchhhcCCccchhhcch
Q 016989 229 RLD-QDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSG 267 (379)
Q Consensus 229 ~l~-~d~l~~l~~~~~v~~~~~~~~w~~i~t~~d~~~a~~ 267 (379)
+. .+++..+..+.+++++..+++|.|||||+||..++.
T Consensus 198 -~~~~~~~~~~~~g~~v~~~~~~~~~~DI~t~~Dl~~a~~ 236 (238)
T PRK13368 198 -IESLEQLRALEHGEKIRMVEVAATSIGVDTPEDLERVRA 236 (238)
T ss_pred -hhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHH
Confidence 00 144533335667999998899999999999998864
No 60
>PLN02917 CMP-KDO synthetase
Probab=99.84 E-value=1.1e-19 Score=167.14 Aligned_cols=223 Identities=14% Similarity=0.143 Sum_probs=156.1
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEE
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVR 81 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~ 81 (379)
+++.+||||+| .++|| | +|+|+|++|+|||+|+++.+.. .+|++...+ .+.+++.. +++++.
T Consensus 46 ~~i~aIIpA~G--~SsR~-~-----~K~L~~i~GkPLL~~vi~~a~~~~~~~~VVV~~~~e-~I~~~~~~----~~v~vi 112 (293)
T PLN02917 46 SRVVGIIPARF--ASSRF-E-----GKPLVHILGKPMIQRTWERAKLATTLDHIVVATDDE-RIAECCRG----FGADVI 112 (293)
T ss_pred CcEEEEEecCC--CCCCC-C-----CCCeeeECCEEHHHHHHHHHHcCCCCCEEEEECChH-HHHHHHHH----cCCEEE
Confidence 45789999999 99999 4 5999999999999999999874 444444333 46666643 345554
Q ss_pred EecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEE--EeCCCCCCceeEEE-
Q 016989 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVI--KVSAESASQFGELV- 156 (379)
Q Consensus 82 ~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~--~~~~~~~~~~g~v~- 156 (379)
...+....|++.+ ..+.+.++. ..+.+++++||.|+ ...+.++++.+.+. .+.++++. +...+++..||.+.
T Consensus 113 ~~~~~~~~GT~~~-~~a~~~l~~-~~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t~~~~~~~~~~~~ygrv~v 189 (293)
T PLN02917 113 MTSESCRNGTERC-NEALKKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDASDPNRVKC 189 (293)
T ss_pred eCCcccCCchHHH-HHHHHhccC-CCCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEEEeeecCHHHhcCCCceEE
Confidence 4444556677765 567777753 23579999999999 56799999987654 33433322 22335788898875
Q ss_pred -EeCCCCcEEEeeec------C---CCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccc
Q 016989 157 -ADPDTNELLHYTEK------P---ETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTD 226 (379)
Q Consensus 157 -~d~~~~~v~~~~ek------p---~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (379)
.+. +|++..|..+ . +.....+.++|+|.|+.+.|..|.+..+++.++++ |++
T Consensus 190 v~~~-~g~alyfsr~~Ipe~kd~~~~~~~i~~~n~Giy~f~~~~L~~l~~l~~~n~e~e~--yLt--------------- 251 (293)
T PLN02917 190 VVDN-QGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDAKFLKIYPELPPTPLQLEE--DLE--------------- 251 (293)
T ss_pred EECC-CCeEEEeecCcCCcCCCcccccccceEEEEEEEEeCHHHHHHHHcCCCCcccchh--ccH---------------
Confidence 563 6776644432 1 12234688999999999988888887777766666 443
Q ss_pred cccccccccccccCCceEEEEEcccchhhcCCccchhhcchHHH
Q 016989 227 FVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYL 270 (379)
Q Consensus 227 ~~~l~~d~l~~l~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~l 270 (379)
|+. .+..+.++.++..+.....++|++++.++.+++.
T Consensus 252 ------dl~-~le~G~~i~~~~~~~~~~GVnt~~dL~~ae~~~~ 288 (293)
T PLN02917 252 ------QLK-VLENGYKMKVIKVDHEAHGVDTPEDVEKIEALMR 288 (293)
T ss_pred ------HHH-HHhCCCceEEEEeCCCCCCCCCHHHHHHHHHHHH
Confidence 343 4455677888877656779999999999987764
No 61
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.82 E-value=6.3e-19 Score=157.29 Aligned_cols=241 Identities=16% Similarity=0.214 Sum_probs=160.3
Q ss_pred eEEEEEecCCCCCCccCCCCC-CCCCCCceeC-CcchhHHHHHhcCc------EEEEcccchH-HHHHHHHhhcccCCcc
Q 016989 9 VVAVIMVGGPTKGTRFRPLSL-NIPKPLFPLG-GQPMVHHPISACKR------IYLVGFYEER-EFALYVSSISNELRIP 79 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~-~~pK~llpi~-g~pli~~~i~~l~~------iiv~~~~~~~-~i~~~l~~~~~~~~~~ 79 (379)
|..|||||| .|||||||++ ..||++|++. +++|+..+++++.. ++|+++.... .+++.+...... ..
T Consensus 2 ~~pvIlaGG--~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~~~~--~~ 77 (333)
T COG0836 2 MIPVILAGG--SGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEIDIE--NA 77 (333)
T ss_pred ceeEEEeCC--CccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhhhhc--cc
Confidence 689999999 9999999985 7999999995 59999999999976 6777765443 344444432111 11
Q ss_pred EEEecCCCCCChHHHHHHHHHhhccCCC-CeEEEEcCCeee-cC-ChHHHHHHH---HhcCCceEEEEEEeCCCCCCcee
Q 016989 80 VRYLREDKPHGSAGALYNFRDLIMEDNP-SHIFLLNCDVCC-SF-PLPEMLDAH---RNYGGMGTILVIKVSAESASQFG 153 (379)
Q Consensus 80 i~~~~~~~~~g~~~al~~~~~~i~~~~~-~~~lv~~gD~i~-~~-dl~~~l~~~---~~~~~~~ti~~~~~~~~~~~~~g 153 (379)
-.++.++....|+.++..+.-.+..+.+ .-++|+++|++. +. .+.+.++.. .+++..+|+...+.. ..+.||
T Consensus 78 ~~illEP~gRnTApAIA~aa~~~~~~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lVTfGI~Pt~--PeTGYG 155 (333)
T COG0836 78 AGIILEPEGRNTAPAIALAALSATAEGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIVTFGIPPTR--PETGYG 155 (333)
T ss_pred cceEeccCCCCcHHHHHHHHHHHHHhCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEEEEecCCCC--CccCcc
Confidence 1155667888999999887666654333 369999999999 32 366666643 345666666666653 468999
Q ss_pred EEEEeCC-----CCcEEEeeecCCCc--------ccceeeeeEEEeCHh-hHHHhhccccccccchhhhhcchhhhhhhh
Q 016989 154 ELVADPD-----TNELLHYTEKPETF--------VSDLINCGVYVFTPD-IFNAIQGVSSQRKDRENLRRVSSFEALQSA 219 (379)
Q Consensus 154 ~v~~d~~-----~~~v~~~~ekp~~~--------~~~~~~~Giy~~~~~-~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (379)
++...+. -.+|.+|.|||+.. ...++|+|+|+|+.+ +++.+++..++-..... +++...
T Consensus 156 YIe~G~~~~~~~~~~V~~FvEKPd~etA~~yv~sG~y~WNSGmF~Fra~~~l~e~~~~~P~i~~~~~-------~~~~~~ 228 (333)
T COG0836 156 YIETGESIAENGVYKVDRFVEKPDLETAKKYVESGEYLWNSGMFLFRASVFLEELKKHQPDIYCAAE-------KAFEAA 228 (333)
T ss_pred eeecCcccccCCceEeeeeeeCCCHHHHHHHHHcCceEeeccceEEEHHHHHHHHHhhCcHHHHHHH-------HHHhcc
Confidence 9988542 23799999999732 246899999999976 47888876654311111 111111
Q ss_pred cccccccccccccccc--------c--cccCCceEEEEEcccchhhcCCccchhhc
Q 016989 220 TRNLTTDFVRLDQDIL--------S--PLAGKKQLYTYETMDFWEQIKTPGMSLKC 265 (379)
Q Consensus 220 ~~~~~~~~~~l~~d~l--------~--~l~~~~~v~~~~~~~~w~~i~t~~d~~~a 265 (379)
. ..++..|..+.+ . -|.+..++.+.+.+-.|-|+|++..+++.
T Consensus 229 ~---d~~~~~l~~e~f~~~p~iSIDYAiMEkt~~~aVVp~~f~WsDlGsW~Al~~~ 281 (333)
T COG0836 229 V---DENSVRLDNEAYEEIPAISIDYAIMEKTSKAAVVPADFGWSDLGSWHALWEV 281 (333)
T ss_pred c---ccchhcccHHHHhhCcccchhHHHHhhhcceEEEecCCCcccccCHHHHHHH
Confidence 0 112211211111 1 14456788999988899999999766653
No 62
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.81 E-value=9.1e-19 Score=169.82 Aligned_cols=243 Identities=16% Similarity=0.241 Sum_probs=155.7
Q ss_pred CceEEEEEecCCCCCCccCCCCCC-CCCCCceeCC-cchhHHHHHhcCc------EEEEcccchHHHHHHHHhhcccCCc
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLN-IPKPLFPLGG-QPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRI 78 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~-~pK~llpi~g-~pli~~~i~~l~~------iiv~~~~~~~~i~~~l~~~~~~~~~ 78 (379)
+.|.+|||||| .||||+|+++. +||+|+|+.| +|||+++++.+.. ++|++......+++.+..... .
T Consensus 4 ~~~~~vIlaGG--~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~~~~~~iivt~~~~~~~v~~ql~~~~~---~ 78 (478)
T PRK15460 4 SKLYPVVMAGG--SGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQHRFIVAEQLRQLNK---L 78 (478)
T ss_pred CceEEEEECCC--CccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhCCCCCcEEEeCHHHHHHHHHHHHhcCC---c
Confidence 34799999999 99999999997 7999999965 6999999999865 555554444456656643210 1
Q ss_pred cEEEecCCCCCChHHHHHHHHHhhccCCC---CeEEEEcCCeee-cC-ChHHHHHHH---HhcCCceEEEEEEeCCCCCC
Q 016989 79 PVRYLREDKPHGSAGALYNFRDLIMEDNP---SHIFLLNCDVCC-SF-PLPEMLDAH---RNYGGMGTILVIKVSAESAS 150 (379)
Q Consensus 79 ~i~~~~~~~~~g~~~al~~~~~~i~~~~~---~~~lv~~gD~i~-~~-dl~~~l~~~---~~~~~~~ti~~~~~~~~~~~ 150 (379)
...++.++...+|+.++..|...+....+ +.++++++|+++ +. .|.+.++.. .+.+..+|+...+.. ..+
T Consensus 79 ~~~ii~EP~~rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt~GI~Pt~--PeT 156 (478)
T PRK15460 79 TENIILEPAGRNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFGIVPDL--PET 156 (478)
T ss_pred cccEEecCCCCChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEEEecCCCC--CCC
Confidence 22455677888999998877666643212 368899999998 32 355555543 223555666666653 458
Q ss_pred ceeEEEEeCCC--------CcEEEeeecCCCc--------ccceeeeeEEEeCHh-hHHHhhccccccccchhhhhcchh
Q 016989 151 QFGELVADPDT--------NELLHYTEKPETF--------VSDLINCGVYVFTPD-IFNAIQGVSSQRKDRENLRRVSSF 213 (379)
Q Consensus 151 ~~g~v~~d~~~--------~~v~~~~ekp~~~--------~~~~~~~Giy~~~~~-~l~~l~~~~~~~~~~~~~~~~~~~ 213 (379)
.||++..++.- .+|.+|.|||+.. ...++|+|+|+|+.+ +++.|++..+.-.....
T Consensus 157 gyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~yl~~G~y~WNsGiF~~~a~~~l~~~~~~~P~i~~~~~------- 229 (478)
T PRK15460 157 GYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAYVASGEYYWNSGMFLFRAGRYLEELKKYRPDILDACE------- 229 (478)
T ss_pred CCCeEEeCCccccccccCceEeeEEEeCCCHHHHHHHHHcCCEEEecceeheeHHHHHHHHHHHCHHHHHHHH-------
Confidence 89999876321 2699999999742 245889999999976 46777765542210000
Q ss_pred hhhhhhcccccccccccccccccc----------ccCCceEEEEEcccchhhcCCccchhhc
Q 016989 214 EALQSATRNLTTDFVRLDQDILSP----------LAGKKQLYTYETMDFWEQIKTPGMSLKC 265 (379)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~d~l~~----------l~~~~~v~~~~~~~~w~~i~t~~d~~~a 265 (379)
.++.... ....+..+..+.++. |.+..++.+.+.+..|-|+|++.++.+.
T Consensus 230 ~~~~~~~--~~~~~~~l~~~~~~~~~~iSiDyavmEk~~~v~vvp~~f~WsDvGsW~sl~~~ 289 (478)
T PRK15460 230 KAMSAVD--PDLDFIRVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWEI 289 (478)
T ss_pred HHHHhcc--CcccceeeCHHHHhhCcCcchhhhhhcccCceEEEecCCCccccCCHHHHHHh
Confidence 0000000 000010000111111 3344568888888889999999887654
No 63
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=99.73 E-value=2e-17 Score=135.93 Aligned_cols=165 Identities=19% Similarity=0.345 Sum_probs=118.1
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEEEe
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~ 83 (379)
|.||||||| .|||+.|+|...||+|+.|.|+|||+++|+.|.+ |+|++.+..+ -.+|+. +++++.+.+.
T Consensus 1 ~nAIIlAAG--~gsR~~plT~~tpK~LlkV~g~plIErqI~~L~e~gI~dI~IVvGYlkE-~FeYLk---dKy~vtLvyN 74 (231)
T COG4750 1 MNAIILAAG--LGSRFVPLTQSTPKSLLKVNGEPLIERQIEQLREAGIDDITIVVGYLKE-QFEYLK---DKYDVTLVYN 74 (231)
T ss_pred CceEEEecc--cccccccccccCChHHHHhcCcccHHHHHHHHHHCCCceEEEEeeehHH-HHHHHH---HhcCeEEEeC
Confidence 579999999 9999999999999999999999999999999987 5444444333 345665 4567888887
Q ss_pred cCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCCCc
Q 016989 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNE 163 (379)
Q Consensus 84 ~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~~ 163 (379)
+......+..+++.|++++.+ .-++.+|..+ .+.+...+..+. --.++.+. +....|. +..+ ++++
T Consensus 75 ~kY~~yNn~ySlyla~d~l~n-----tYiidsDnyl---~kNif~~~~~~S--~Yfav~~~--~~tnEw~-l~~~-~~~k 140 (231)
T COG4750 75 PKYREYNNIYSLYLARDFLNN-----TYIIDSDNYL---TKNIFLTKESHS--KYFAVYRS--GKTNEWL-LIYN-SDGK 140 (231)
T ss_pred chHHhhhhHHHHHHHHHHhcc-----cEEeccchHh---hhhhhhcCcccc--eEEEEEec--CCCceeE-EEEc-CCCc
Confidence 777778899999999999975 6788999988 333333332221 11222222 2334444 3444 3789
Q ss_pred EEEeeecCCCcccceeeeeEEEeCHhhHHHhhc
Q 016989 164 LLHYTEKPETFVSDLINCGVYVFTPDIFNAIQG 196 (379)
Q Consensus 164 v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~ 196 (379)
|+++.-... .++.-+|+-.|+....+.+.+
T Consensus 141 i~~v~Igg~---~~~imsG~sff~~~~~~ki~~ 170 (231)
T COG4750 141 ITRVDIGGL---NGYIMSGISFFDAQFSNKIKK 170 (231)
T ss_pred EEEEEecCc---ccceEeeeeeecchhHHHHHH
Confidence 998876643 467888999998766555443
No 64
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=99.69 E-value=2.1e-15 Score=135.17 Aligned_cols=212 Identities=15% Similarity=0.116 Sum_probs=138.9
Q ss_pred EEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEEEecC
Q 016989 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLRE 85 (379)
Q Consensus 11 aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~~ 85 (379)
+||+|+| .|+|| | +|+|++++|+|||.|+++.+.. |+|++.. +.+.+++.. +++++.....
T Consensus 2 ~iIpA~g--~s~R~-~-----~K~L~~l~GkPli~~~le~~~~~~~d~VvVvt~~--~~i~~~~~~----~g~~~v~~~~ 67 (238)
T TIGR00466 2 VIIPARL--ASSRL-P-----GKPLEDIFGKPMIVHVAENANESGADRCIVATDD--ESVAQTCQK----FGIEVCMTSK 67 (238)
T ss_pred EEEecCC--CCCCC-C-----CCeecccCCcCHHHHHHHHHHhCCCCeEEEEeCH--HHHHHHHHH----cCCEEEEeCC
Confidence 7999999 99999 4 7999999999999999998864 6666653 225555542 4455443333
Q ss_pred CCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCC---CCceeEEEEeCC
Q 016989 86 DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAES---ASQFGELVADPD 160 (379)
Q Consensus 86 ~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~---~~~~g~v~~d~~ 160 (379)
....|+ +.+..+.+.+.....+.++++.||.|+ +..+.++++.+.+.+.++++++.+..... .++...+..+ +
T Consensus 68 ~~~~Gt-~r~~~~~~~l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d~~~~~~p~~vk~v~~-~ 145 (238)
T TIGR00466 68 HHNSGT-ERLAEVVEKLALKDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHDAEEAFNPNAVKVVLD-S 145 (238)
T ss_pred CCCChh-HHHHHHHHHhCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCCHHHccCCCceEEEeC-C
Confidence 334443 344444444421113569999999998 56789999987655566777777653211 1123333445 3
Q ss_pred CCcEEEeeecCC-----------Ccc--cceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhcccccccc
Q 016989 161 TNELLHYTEKPE-----------TFV--SDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDF 227 (379)
Q Consensus 161 ~~~v~~~~ekp~-----------~~~--~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (379)
+|+...|.+.+- .+. ..+...|+|.|++++|+.+....++.....+
T Consensus 146 ~g~alyfsr~~ip~~R~~~~~~~tpq~~~~~~h~Giy~~~~~~L~~~~~~~~~~le~~e--------------------- 204 (238)
T TIGR00466 146 QGYALYFSRSLIPFDRDFFAKRQTPVGDNLLRHIGIYGYRAGFIEEYVAWKPCVLEEIE--------------------- 204 (238)
T ss_pred CCeEEEecCCCCCCCCCcccccccccccceeEEEEEEeCCHHHHHHHHhCCCCcccccc---------------------
Confidence 677766665411 111 1467899999999999988876544321110
Q ss_pred ccccccccccccCCceEEEEEcccc-hhhcCCccch
Q 016989 228 VRLDQDILSPLAGKKQLYTYETMDF-WEQIKTPGMS 262 (379)
Q Consensus 228 ~~l~~d~l~~l~~~~~v~~~~~~~~-w~~i~t~~d~ 262 (379)
.-+-++.|..+.+|.....+.. -..+|||+|+
T Consensus 205 ---~leqlr~le~g~~i~~~~~~~~~~~~vdt~~d~ 237 (238)
T TIGR00466 205 ---KLEQLRVLYYGEKIHVKIAQEVPSVGVDTQEDL 237 (238)
T ss_pred ---hhHHHhhhhcCCceEEEEeCCCCCCCCCChHHc
Confidence 1456677778889998887655 4599999986
No 65
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=99.61 E-value=1.9e-14 Score=128.01 Aligned_cols=200 Identities=18% Similarity=0.172 Sum_probs=130.1
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccchHHHHHHHHhhcccCCccEEE
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVRY 82 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~~~i~~~l~~~~~~~~~~i~~ 82 (379)
+.+|||||| .|+|| + +|+|++++|+|||+|+++.+.+ |+|++. . +.+.+++.. ++..+.+
T Consensus 2 ~~~iIlA~G--~s~R~-~-----~K~l~~l~Gkpll~~~l~~l~~~~~~~~IvV~~~-~-~~i~~~~~~----~~~~~~~ 67 (223)
T cd02513 2 ILAIIPARG--GSKGI-P-----GKNIRPLGGKPLIAWTIEAALESKLFDRVVVSTD-D-EEIAEVARK----YGAEVPF 67 (223)
T ss_pred eEEEEecCC--CCCCC-C-----CcccchhCCccHHHHHHHHHHhCCCCCEEEEECC-c-HHHHHHHHH----hCCCcee
Confidence 679999999 99999 3 5999999999999999999964 555553 2 235554432 2332223
Q ss_pred ecC----CCCCChHHHHHHHHHhhccC--CCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeE
Q 016989 83 LRE----DKPHGSAGALYNFRDLIMED--NPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGE 154 (379)
Q Consensus 83 ~~~----~~~~g~~~al~~~~~~i~~~--~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~ 154 (379)
... ....|+.++++.+++.+... ..+.++++.||.|+ ..++.++++.+...+++.++.+.+.. ...|..
T Consensus 68 ~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~~~---~~~~~~ 144 (223)
T cd02513 68 LRPAELATDTASSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTEFH---RFPWRA 144 (223)
T ss_pred eCChHHCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEecC---cCcHHh
Confidence 321 23457889999998877531 13579999999998 57799999998877777777766652 223332
Q ss_pred EEEeCCCCcEEEeeec-----CCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhcccccccccc
Q 016989 155 LVADPDTNELLHYTEK-----PETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVR 229 (379)
Q Consensus 155 v~~d~~~~~v~~~~ek-----p~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (379)
...+.++..+..+.++ .+.+.....++|+|+++++.+......
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~n~~~y~~~~~~~~~~~~~-------------------------------- 192 (223)
T cd02513 145 LGLDDNGLEPVNYPEDKRTRRQDLPPAYHENGAIYIAKREALLESNSF-------------------------------- 192 (223)
T ss_pred eeeccCCceeccCcccccCCcCCChhHeeECCEEEEEEHHHHHhcCCc--------------------------------
Confidence 2222111122222221 123345567889999999876442210
Q ss_pred ccccccccccCCceEEEEEccc-chhhcCCccchhhcch
Q 016989 230 LDQDILSPLAGKKQLYTYETMD-FWEQIKTPGMSLKCSG 267 (379)
Q Consensus 230 l~~d~l~~l~~~~~v~~~~~~~-~w~~i~t~~d~~~a~~ 267 (379)
-+.++..+..+. .-.+|++++|+..|..
T Consensus 193 ----------~g~~~~~~~~~~~~~~dI~~~~D~~~ae~ 221 (223)
T cd02513 193 ----------FGGKTGPYEMPRERSIDIDTEEDFELAEA 221 (223)
T ss_pred ----------cCCCeEEEEeCccceeCCCCHHHHHHHHH
Confidence 034666666544 4689999999877643
No 66
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=99.55 E-value=8.8e-14 Score=124.12 Aligned_cols=212 Identities=17% Similarity=0.211 Sum_probs=130.5
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccch-HHHHHHHHhhcccCCcc
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEE-REFALYVSSISNELRIP 79 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~-~~i~~~l~~~~~~~~~~ 79 (379)
+.+.+|||||| .|+||+. ..||+|++++|+|||+|+++.+.. |+|+++... +.+...+.. .. ..
T Consensus 2 ~~~~~iILAaG--~s~R~g~---~~~K~l~~~~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~---~~-~~ 72 (227)
T PRK00155 2 MMVYAIIPAAG--KGSRMGA---DRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLA---KD-PK 72 (227)
T ss_pred CceEEEEEcCc--cccccCC---CCCceeeEECCEEHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhhc---cC-Cc
Confidence 45789999999 9999964 569999999999999999999953 666665443 223222211 11 12
Q ss_pred EEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEE
Q 016989 80 VRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVA 157 (379)
Q Consensus 80 i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~ 157 (379)
+..... ..+.+++++.+.+.+.+ .+.+++++||.|+ ...++++++.+.+.+ .++++.+.. + .+.. .
T Consensus 73 ~~~~~~--~~~~~~sv~~~l~~~~~--~d~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~~~~~~--~--~~~~--v 140 (227)
T PRK00155 73 VTVVAG--GAERQDSVLNGLQALPD--DDWVLVHDAARPFLTPDDIDRLIEAAEETG--AAILAVPVK--D--TIKR--S 140 (227)
T ss_pred eEEeCC--cchHHHHHHHHHHhCCC--CCEEEEccCccCCCCHHHHHHHHHHHhhCC--CEEEEEecc--c--cEEE--E
Confidence 333322 23578999999888743 2579999999998 567899999876643 434444432 1 1222 2
Q ss_pred eCCCCcEEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhcccccccccccccccccc
Q 016989 158 DPDTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSP 237 (379)
Q Consensus 158 d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~ 237 (379)
+ +++.+..+.+.. .-...-+.|.|+.+.+..+...... + ++ |+|+ ....
T Consensus 141 ~-~~g~~~~~~~r~----~~~~~~~p~~f~~~~l~~~~~~~~~--~-~~--~~~d---------------------~~~~ 189 (227)
T PRK00155 141 D-DGGGIVDTPDRS----GLWAAQTPQGFRIELLREALARALA--E-GK--TITD---------------------DASA 189 (227)
T ss_pred c-CCCceeecCChH----HheeeeCCccchHHHHHHHHHHHHh--c-CC--CcCc---------------------HHHH
Confidence 3 256666553321 1122234889998776544322110 0 11 2222 1111
Q ss_pred cc-CCceEEEEEcccchhhcCCccchhhcchHHH
Q 016989 238 LA-GKKQLYTYETMDFWEQIKTPGMSLKCSGLYL 270 (379)
Q Consensus 238 l~-~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~l 270 (379)
+. .+.++..+..+..+.+|+|++|+..|..++.
T Consensus 190 ~~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~~~ 223 (227)
T PRK00155 190 VERLGKPVRLVEGRYDNIKITTPEDLALAEAILK 223 (227)
T ss_pred HHHcCCCeEEEecCcccccCCCHHHHHHHHHHHH
Confidence 11 2346777776667889999999998876654
No 67
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=99.55 E-value=1.6e-13 Score=121.57 Aligned_cols=198 Identities=15% Similarity=0.079 Sum_probs=135.0
Q ss_pred EEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccchHHHHHHHHhhcccCCccEEEec
Q 016989 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVRYLR 84 (379)
Q Consensus 11 aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~ 84 (379)
|||||+| .++|| | .|.+++++|+|||.|+++.+.+ |+|.+.. + .+.+... .+|.++.+.+
T Consensus 2 aiIpArG--~Skr~-~-----~Knl~~l~GkpLi~~ti~~a~~s~~~d~IvVstd~-~-~i~~~a~----~~g~~v~~~r 67 (222)
T TIGR03584 2 AIIPARG--GSKRI-P-----RKNIKPFCGKPMIAYSIEAALNSGLFDKVVVSTDD-E-EIAEVAK----SYGASVPFLR 67 (222)
T ss_pred EEEccCC--CCCCC-C-----CccchhcCCcCHHHHHHHHHHhCCCCCEEEEeCCC-H-HHHHHHH----HcCCEeEEeC
Confidence 7999999 88888 5 6999999999999999999976 5555543 2 2555443 3455554432
Q ss_pred ----CCCCCChHHHHHHHHHhhcc-CCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEE
Q 016989 85 ----EDKPHGSAGALYNFRDLIME-DNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVA 157 (379)
Q Consensus 85 ----~~~~~g~~~al~~~~~~i~~-~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~ 157 (379)
.....|+.++++.+++.++. ...+.++++.||.|+ ..+++++++.+.+.+++..+.+.+.. .+..+.. ..
T Consensus 68 ~~~l~~d~~~~~~si~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~~--~~~~~~~-~~ 144 (222)
T TIGR03584 68 PKELADDFTGTAPVVKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSFA--FPIQRAF-KL 144 (222)
T ss_pred hHHHcCCCCCchHHHHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeeccC--CChHHhe-EE
Confidence 13456888999999888743 224679999999999 67899999998877788877777652 2222322 33
Q ss_pred eCCCCcEEEeeec------CCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhcccccccccccc
Q 016989 158 DPDTNELLHYTEK------PETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLD 231 (379)
Q Consensus 158 d~~~~~v~~~~ek------p~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 231 (379)
+ ++|++..+... .+.+.....++++|+++++.+..-...
T Consensus 145 ~-~~g~~~~~~~~~~~~~rQd~~~~y~~nga~y~~~~~~~~~~~~~---------------------------------- 189 (222)
T TIGR03584 145 K-ENGGVEMFFPEHFNTRSQDLEEAYHDAGQFYWGKSQAWLESGPI---------------------------------- 189 (222)
T ss_pred C-CCCcEEecCCCcccCCCCCCchheeeCCeEEEEEHHHHHhcCCc----------------------------------
Confidence 3 25555544421 123344567999999999877532210
Q ss_pred ccccccccCCceEEEEEccc-chhhcCCccchhhcchH
Q 016989 232 QDILSPLAGKKQLYTYETMD-FWEQIKTPGMSLKCSGL 268 (379)
Q Consensus 232 ~d~l~~l~~~~~v~~~~~~~-~w~~i~t~~d~~~a~~~ 268 (379)
-+.++..|+.+. ...||++++|+..|..+
T Consensus 190 --------~~~~~~~~~m~~~~~iDID~~~D~~~ae~l 219 (222)
T TIGR03584 190 --------FSPHSIPIVLPRHLVQDIDTLEDWERAELL 219 (222)
T ss_pred --------cCCCcEEEEeCccceeCCCCHHHHHHHHHH
Confidence 024566676654 47899999999887543
No 68
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=99.54 E-value=4.5e-14 Score=118.92 Aligned_cols=116 Identities=26% Similarity=0.380 Sum_probs=88.1
Q ss_pred EEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEEEecC
Q 016989 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLRE 85 (379)
Q Consensus 11 aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~~ 85 (379)
+|||||| .|+||+. ||+|+|++|+|||+|+++.+.+ |+|+++.. .+..++.. .++++....
T Consensus 1 ~vILa~G--~s~Rmg~-----~K~l~~i~g~~li~~~l~~l~~~~~~~Ivvv~~~~--~~~~~~~~----~~~~~v~~~- 66 (160)
T PF12804_consen 1 AVILAAG--KSSRMGG-----PKALLPIGGKPLIERVLEALREAGVDDIVVVTGEE--EIYEYLER----YGIKVVVDP- 66 (160)
T ss_dssp EEEEESS--SCGGGTS-----CGGGSEETTEEHHHHHHHHHHHHTESEEEEEESTH--HHHHHHTT----TTSEEEE-S-
T ss_pred CEEECCc--CcccCCC-----CccceeECCccHHHHHHHHhhccCCceEEEecChH--HHHHHHhc----cCceEEEec-
Confidence 7999999 9999986 9999999999999999999987 77777762 24444432 344443332
Q ss_pred CCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEE
Q 016989 86 DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVI 142 (379)
Q Consensus 86 ~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~ 142 (379)
....|.+.+++.+...+.. .+.|++++||+++ ...++.+++.+.+.+++++++..
T Consensus 67 ~~~~G~~~sl~~a~~~~~~--~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~~ 123 (160)
T PF12804_consen 67 EPGQGPLASLLAALSQLPS--SEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPVF 123 (160)
T ss_dssp TSSCSHHHHHHHHHHTSTT--SSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEEE
T ss_pred cccCChHHHHHHHHHhccc--CCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEEE
Confidence 2358999999999998742 2579999999987 56689999988776666544433
No 69
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=99.53 E-value=1.3e-13 Score=122.24 Aligned_cols=207 Identities=19% Similarity=0.255 Sum_probs=127.8
Q ss_pred EEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccchHHHHHHHHhhcccCCccEEEe
Q 016989 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (379)
Q Consensus 10 ~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~ 83 (379)
.+|||||| .|+||++ ..||+|+|++|+|||+|+++.+.. ++|++..........+... .....+.++
T Consensus 2 ~~vILAaG--~s~R~~~---~~~K~l~~i~Gkpll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~--~~~~~~~~~ 74 (218)
T cd02516 2 AAIILAAG--SGSRMGA---DIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAKY--GLSKVVKIV 74 (218)
T ss_pred EEEEECCc--ccccCCC---CCCcceeEECCeEHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHHhc--ccCCCeEEE
Confidence 58999999 9999987 479999999999999999999964 5665554332222222111 112234444
Q ss_pred cCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCC
Q 016989 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDT 161 (379)
Q Consensus 84 ~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~ 161 (379)
... .+...+++.+++.++....+.++++.||.|+ ...++.+++.+.+.+ ..+...+.. + +....+ ++
T Consensus 75 ~~~--~~~~~si~~al~~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~~~~~~--~----~~~~~~-~~ 143 (218)
T cd02516 75 EGG--ATRQDSVLNGLKALPDADPDIVLIHDAARPFVSPELIDRLIDALKEYG--AAIPAVPVT--D----TIKRVD-DD 143 (218)
T ss_pred CCc--hHHHHHHHHHHHhcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhCC--cEEEEEecc--c----cEEEec-CC
Confidence 322 3567899999988742123579999999998 566899999876544 333333321 1 122344 36
Q ss_pred CcEEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccccC-
Q 016989 162 NELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAG- 240 (379)
Q Consensus 162 ~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~- 240 (379)
|.+..+.+.. .-....++ ++|+.+.+..+......+ +. |+| |....+.+
T Consensus 144 g~~~~~~~r~---~~~~~~~P-~~f~~~~~~~~~~~~~~~--~~---~~t---------------------d~~~~~~~~ 193 (218)
T cd02516 144 GVVVETLDRE---KLWAAQTP-QAFRLDLLLKAHRQASEE--GE---EFT---------------------DDASLVEAA 193 (218)
T ss_pred CceeecCChH---HhhhhcCC-CcccHHHHHHHHHHHHhc--CC---CcC---------------------cHHHHHHHc
Confidence 7888777642 23345666 899988765554322111 11 222 22222221
Q ss_pred CceEEEEEcccchhhcCCccchhh
Q 016989 241 KKQLYTYETMDFWEQIKTPGMSLK 264 (379)
Q Consensus 241 ~~~v~~~~~~~~w~~i~t~~d~~~ 264 (379)
+.++..+..+..-.+|+||+||..
T Consensus 194 ~~~v~~v~~~~~~~~i~t~~dl~~ 217 (218)
T cd02516 194 GGKVALVEGSEDNIKITTPEDLAL 217 (218)
T ss_pred CCCeEEEecCcccccCCCHHHHhh
Confidence 246666665555569999999854
No 70
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=99.53 E-value=2.3e-13 Score=129.03 Aligned_cols=202 Identities=14% Similarity=0.166 Sum_probs=130.0
Q ss_pred CCceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccchHHHHHHHHhhcccCCcc
Q 016989 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIP 79 (379)
Q Consensus 6 ~~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~~~i~~~l~~~~~~~~~~ 79 (379)
|+++.+|||||| .|+||.. ..||+|++++|+|||+|+++.+.. |+|+.+.......+.+. ..+..
T Consensus 3 mm~v~aIILAAG--~GsRmg~---~~pKqll~l~GkPll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~---~~~~~- 73 (378)
T PRK09382 3 MSDISLVIVAAG--RSTRFSA---EVKKQWLRIGGKPLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKAL---PEIKF- 73 (378)
T ss_pred CCcceEEEECCC--CCccCCC---CCCeeEEEECCeeHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhc---ccCCe-
Confidence 456899999999 9999954 689999999999999999999975 56665543332222221 11111
Q ss_pred EEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEE
Q 016989 80 VRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVA 157 (379)
Q Consensus 80 i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~ 157 (379)
+.++. ...+..++++.+++.++. +.++++.||.|+ ...++.+++...+. ++++.+.+.. ++..|+...+
T Consensus 74 v~~v~--gG~~r~~SV~~gL~~l~~---d~VLVhdadrPfv~~e~I~~li~~~~~~--~a~i~~~pv~--Dtik~~~~tl 144 (378)
T PRK09382 74 VTLVT--GGATRQESVRNALEALDS---EYVLIHDAARPFVPKELIDRLIEALDKA--DCVLPALPVA--DTLKRANETV 144 (378)
T ss_pred EEEeC--CCchHHHHHHHHHHhcCC---CeEEEeeccccCCCHHHHHHHHHHhhcC--CeEEEEEEec--cCcEEeeeEc
Confidence 33332 234578899999988854 479999999998 45578888866543 4667777763 5555654444
Q ss_pred eCCCCcEEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhcccccccccccccccccc
Q 016989 158 DPDTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSP 237 (379)
Q Consensus 158 d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~ 237 (379)
+ ...+..+ ++|+.+.... +++.... ++ ++ +|..+.
T Consensus 145 d--R~~l~~~-QTPQ~f~~~~-----------l~~a~~~--------~~-------------------~~----TDd~sl 179 (378)
T PRK09382 145 D--REGLKLI-QTPQLSRTKT-----------LKAAADG--------RG-------------------DF----TDDSSA 179 (378)
T ss_pred C--cccEEEE-ECCCCCCHHH-----------HHHHHhC--------CC-------------------Cc----ccHHHH
Confidence 3 2344333 6665432211 1111110 00 11 233333
Q ss_pred cc-CCceEEEEEcccchhhcCCccchhhcchHHH
Q 016989 238 LA-GKKQLYTYETMDFWEQIKTPGMSLKCSGLYL 270 (379)
Q Consensus 238 l~-~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~l 270 (379)
+. .+.+|..++.+..|..+.+|+|+..|..++.
T Consensus 180 ~~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l~ 213 (378)
T PRK09382 180 AEAAGGKVALVEGSEDLHKLTYKEDLKMADLLLS 213 (378)
T ss_pred HHHcCCcEEEEECCCcccCCCCHHHHHHHHHHhc
Confidence 32 3568999988889999999999999976653
No 71
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=99.53 E-value=1.3e-13 Score=122.11 Aligned_cols=205 Identities=17% Similarity=0.202 Sum_probs=128.8
Q ss_pred EEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccch-HHHHHHHHhhcccCCccEEE
Q 016989 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEE-REFALYVSSISNELRIPVRY 82 (379)
Q Consensus 10 ~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~-~~i~~~l~~~~~~~~~~i~~ 82 (379)
.||||||| .|+||+. ..||+|++++|+|||+|+++.+.. ++|++.... ..+..++.. . ..+.+
T Consensus 1 ~aiIlAaG--~s~R~~~---~~~K~l~~l~gkpll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~---~--~~~~~ 70 (217)
T TIGR00453 1 SAVIPAAG--RGTRFGS---GVPKQYLELGGRPLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLVA---R--AVPKI 70 (217)
T ss_pred CEEEEcCc--ccccCCC---CCCccEeEECCeEHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhhc---C--CcEEE
Confidence 37999999 9999986 579999999999999999998874 566655432 334433321 1 12233
Q ss_pred ecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCC
Q 016989 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPD 160 (379)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~ 160 (379)
+... .+..++++.+++.++ ..+.+++++||.|+ ...+..+++.+.+. +.++++.+. ..+....++
T Consensus 71 ~~~~--~~~~~sl~~~l~~~~--~~d~vlv~~~D~P~i~~~~i~~li~~~~~~--~~~~~~~~~------~~~v~~~~~- 137 (217)
T TIGR00453 71 VAGG--DTRQDSVRNGLKALK--DAEWVLVHDAARPFVPKELLDRLLEALRKA--GAAILALPV------ADTLKRVEA- 137 (217)
T ss_pred eCCC--chHHHHHHHHHHhCC--CCCEEEEccCccCCCCHHHHHHHHHHHhhC--CcEEEeEec------cceEEEEcC-
Confidence 3222 246788999888772 23579999999998 56689999977654 344444443 223344453
Q ss_pred CCcEEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhcccccccccccccccccccc-
Q 016989 161 TNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLA- 239 (379)
Q Consensus 161 ~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~- 239 (379)
+|.+..+.++.+ -....+ .|.|+...+..+...... + ++ |+ .|....+.
T Consensus 138 ~g~~~~~~~r~~---~~~~~~-p~~f~~~~l~~~~~~~~~--~-~~--~~---------------------~d~~~~~~~ 187 (217)
T TIGR00453 138 DGFIVETVDREG---LWAAQT-PQAFRTELLKKALARAKE--E-GF--EI---------------------TDDASAVEK 187 (217)
T ss_pred CCceeecCChHH---eEEEeC-CCcccHHHHHHHHHHHHh--c-CC--CC---------------------CcHHHHHHH
Confidence 567777776422 222334 689998776544321110 0 11 11 22222221
Q ss_pred CCceEEEEEcccchhhcCCccchhhcch
Q 016989 240 GKKQLYTYETMDFWEQIKTPGMSLKCSG 267 (379)
Q Consensus 240 ~~~~v~~~~~~~~w~~i~t~~d~~~a~~ 267 (379)
.+.++..+..+..+.+|+||+|+..+.+
T Consensus 188 ~g~~i~~~~~~~~~~~I~~~~Dl~~ae~ 215 (217)
T TIGR00453 188 LGGKVALVEGDALNFKITTPEDLALAEA 215 (217)
T ss_pred cCCCeEEEecCccccccCCHHHHHHHHH
Confidence 2457777777666789999999987754
No 72
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.53 E-value=4.1e-13 Score=114.04 Aligned_cols=224 Identities=15% Similarity=0.174 Sum_probs=157.6
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEE
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVR 81 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~ 81 (379)
+++.+||+|.= .+|||.. |||-.|+|+|||.|+.+++.+ ++|.+.. +.+.+.... +|.++.
T Consensus 2 ~~~~viIPAR~--~STRLpg------KPLadI~GkpmI~rV~e~a~~s~~~rvvVATDd--e~I~~av~~----~G~~av 67 (247)
T COG1212 2 MKFVVIIPARL--ASTRLPG------KPLADIGGKPMIVRVAERALKSGADRVVVATDD--ERIAEAVQA----FGGEAV 67 (247)
T ss_pred CceEEEEecch--hcccCCC------CchhhhCCchHHHHHHHHHHHcCCCeEEEEcCC--HHHHHHHHH----hCCEEE
Confidence 45788999987 7888866 999999999999999999985 6666553 336666653 577887
Q ss_pred EecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCC---CCCceeEEE
Q 016989 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAE---SASQFGELV 156 (379)
Q Consensus 82 ~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~---~~~~~g~v~ 156 (379)
....+...||- .+..+.+.+.-...+.++=+.||.++ +..+..+++.....++++..++.+.... ..++--.++
T Consensus 68 mT~~~h~SGTd-R~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i~~~ee~~nPN~VKvV 146 (247)
T COG1212 68 MTSKDHQSGTD-RLAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKITDEEEAFNPNVVKVV 146 (247)
T ss_pred ecCCCCCCccH-HHHHHHHhcCCCcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeecCCHHHhcCCCcEEEE
Confidence 77777788884 66666666643323567778899999 5668888888777777765555554321 122333344
Q ss_pred EeCCCCcEEEeeecCCCc-------ccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhcccccccccc
Q 016989 157 ADPDTNELLHYTEKPETF-------VSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVR 229 (379)
Q Consensus 157 ~d~~~~~v~~~~ekp~~~-------~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (379)
.| .+|+.+.|...|-.. ..-+.-.|+|.|++.+++.|....++.....+
T Consensus 147 ~d-~~g~ALYFSRs~iP~~rd~~~~~p~l~HIGIYayr~~~L~~f~~~~ps~LE~~E----------------------- 202 (247)
T COG1212 147 LD-KEGYALYFSRAPIPYGRDNFGGTPFLRHIGIYAYRAGFLERFVALKPSPLEKIE----------------------- 202 (247)
T ss_pred Ec-CCCcEEEEEcCCCCCcccccCCcchhheeehHHhHHHHHHHHHhcCCchhHHHH-----------------------
Confidence 55 368999998865311 14466899999999999988876654321100
Q ss_pred ccccccccccCCceEEEEEcccch-hhcCCccchhhcchHHH
Q 016989 230 LDQDILSPLAGKKQLYTYETMDFW-EQIKTPGMSLKCSGLYL 270 (379)
Q Consensus 230 l~~d~l~~l~~~~~v~~~~~~~~w-~~i~t~~d~~~a~~~~l 270 (379)
..+-|+.|..+.+|.+...+..- ..+|||+|+.++.+++.
T Consensus 203 -~LEQLR~Le~G~kI~v~i~~~~p~~gVDT~EDLe~v~~~~~ 243 (247)
T COG1212 203 -SLEQLRVLENGEKIHVEIVKEVPSIGVDTPEDLERVRKILS 243 (247)
T ss_pred -HHHHHHHHHcCCeeEEEEeccCCCCCCCCHHHHHHHHHHHH
Confidence 02345556678899998887655 89999999999876654
No 73
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=99.52 E-value=7.4e-14 Score=119.80 Aligned_cols=119 Identities=21% Similarity=0.279 Sum_probs=88.5
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEEEe
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~ 83 (379)
|.||||||| +|+||++ .||+|+|++|+|||+|+++.+.. ++|+++...+.++.|+... ... +.
T Consensus 1 m~aIILAgG--~gsRmg~----~~K~Ll~i~GkplI~~vi~~l~~~~i~~I~Vv~~~~~~~~~~~l~~~----~~~--~~ 68 (183)
T TIGR00454 1 MDALIMAGG--KGTRLGG----VEKPLIEVCGRCLIDHVLSPLLKSKVNNIIIATSPHTPKTEEYINSA----YKD--YK 68 (183)
T ss_pred CeEEEECCc--cCccCCC----CCceEeEECCEEHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhc----CcE--EE
Confidence 689999999 9999976 69999999999999999999874 6666665555577777641 111 22
Q ss_pred cCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEE
Q 016989 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVI 142 (379)
Q Consensus 84 ~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~ 142 (379)
.....|.+.++..+++.+... +++++++||.++ ...+..+++.+...+.....++.
T Consensus 69 -~~~g~G~~~~l~~al~~~~~~--~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~ 126 (183)
T TIGR00454 69 -NASGKGYIEDLNECIGELYFS--EPFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAVMI 126 (183)
T ss_pred -ecCCCCHHHHHHHHhhcccCC--CCEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEEEe
Confidence 245568888999888765322 469999999998 66789999987665554433333
No 74
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=99.50 E-value=2.2e-13 Score=117.80 Aligned_cols=114 Identities=19% Similarity=0.205 Sum_probs=79.1
Q ss_pred EEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEEEecC
Q 016989 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLRE 85 (379)
Q Consensus 11 aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~~ 85 (379)
+|||||| .|+||++ ||+|+|++|+|||+|+++.+.+ ++|++....+.+...+. ..+++.+... .
T Consensus 2 ~iIla~G--~s~R~g~-----~K~ll~~~g~pll~~~i~~l~~~~~~~iivv~~~~~~~~~~~~~---~~~~v~~v~~-~ 70 (188)
T TIGR03310 2 AIILAAG--LSSRMGQ-----NKLLLPYKGKTILEHVVDNALRLFFDEVILVLGHEADELVALLA---NHSNITLVHN-P 70 (188)
T ss_pred eEEECCC--CcccCCC-----CceecccCCeeHHHHHHHHHHHcCCCcEEEEeCCcHHHHHHHhc---cCCCeEEEEC-c
Confidence 7999999 9999986 9999999999999999988764 55555544333322221 2234433222 2
Q ss_pred CCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCce
Q 016989 86 DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMG 137 (379)
Q Consensus 86 ~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ 137 (379)
....|++++++.+++... ..+.+++++||+++ ...++.+++.+...+.++
T Consensus 71 ~~~~g~~~si~~~l~~~~--~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~ 122 (188)
T TIGR03310 71 QYAEGQSSSIKLGLELPV--QSDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEI 122 (188)
T ss_pred ChhcCHHHHHHHHhcCCC--CCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcE
Confidence 234688999999887211 13579999999987 456888888776554433
No 75
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=99.49 E-value=3.9e-13 Score=120.15 Aligned_cols=213 Identities=12% Similarity=0.136 Sum_probs=127.9
Q ss_pred ceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccch-HHHHHHHHhhcccCCccE
Q 016989 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEE-REFALYVSSISNELRIPV 80 (379)
Q Consensus 8 ~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~-~~i~~~l~~~~~~~~~~i 80 (379)
++.+|||||| .|+||+. ..||+|++++|+|||+|+++.+.. ++|++.... ..+.+++..+... ...+
T Consensus 2 ~~~~iIlAaG--~g~R~g~---~~~K~l~~l~gkpll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~-~~~~ 75 (230)
T PRK13385 2 NYELIFLAAG--QGKRMNA---PLNKMWLDLVGEPIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMKQLNVA-DQRV 75 (230)
T ss_pred ceEEEEECCe--eccccCC---CCCcceeEECCeEHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHHhcCcC-CCce
Confidence 3689999999 9999975 579999999999999999999853 666655433 2233444332110 0123
Q ss_pred EEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEe
Q 016989 81 RYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVAD 158 (379)
Q Consensus 81 ~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d 158 (379)
.++. ...+..++++.+++.++. .+.++++.||.|+ ...++++++.+.+.+ ..+++.+.. + .....+
T Consensus 76 ~~v~--~g~~r~~sv~~gl~~~~~--~d~vli~~~d~P~i~~~~i~~li~~~~~~~--~~~~~~~~~-----d-ti~~~~ 143 (230)
T PRK13385 76 EVVK--GGTERQESVAAGLDRIGN--EDVILVHDGARPFLTQDIIDRLLEGVAKYG--AAICAVEVK-----D-TVKRVK 143 (230)
T ss_pred EEcC--CCchHHHHHHHHHHhccC--CCeEEEccCCCCCCCHHHHHHHHHHHhhCC--cEEEEEecc-----c-eEEEEc
Confidence 3332 223456899999888753 2468999999999 556899999876654 334444431 1 122222
Q ss_pred CCCCcEEEeeecCCCcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhccccccccccccccccccc
Q 016989 159 PDTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPL 238 (379)
Q Consensus 159 ~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l 238 (379)
++.+....++ ...+.--+.|.|+.+.+...-+... .+.+ |.|+ +..-..
T Consensus 144 --~~~~~~~i~r----~~~~~~qtpq~f~~~~l~~~~~~~~---~~~~--~~td--------------------~~~~~~ 192 (230)
T PRK13385 144 --DKQVIETVDR----NELWQGQTPQAFELKILQKAHRLAS---EQQF--LGTD--------------------EASLVE 192 (230)
T ss_pred --CCeeEeccCH----HHHhhhcCCceeeHHHHHHHHHHHH---hcCC--CcCc--------------------HHHHHH
Confidence 3444333332 1222334578888665433322110 0011 1121 111112
Q ss_pred cCCceEEEEEcccchhhcCCccchhhcchHH
Q 016989 239 AGKKQLYTYETMDFWEQIKTPGMSLKCSGLY 269 (379)
Q Consensus 239 ~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~ 269 (379)
..+.+|..++-+.....|+||+|+..|..++
T Consensus 193 ~~g~~v~~v~~~~~n~kItt~eDl~~a~~~l 223 (230)
T PRK13385 193 RSPHPVKLVQGSYYNIKLTTPEDMPLAKAIL 223 (230)
T ss_pred HcCCCEEEEECCcccCcCCCHHHHHHHHHHH
Confidence 2346788887777788999999999887655
No 76
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.46 E-value=5.8e-13 Score=114.81 Aligned_cols=114 Identities=23% Similarity=0.364 Sum_probs=83.2
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEEEe
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~ 83 (379)
+.+|||||| .|+||++ ||+|++++|+|||+|+++.+.. ++|++......+.+++. .+++.+ ..
T Consensus 1 ~~~vIlAgG--~s~R~g~-----~K~l~~~~g~~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~----~~~~~~-~~ 68 (186)
T cd04182 1 IAAIILAAG--RSSRMGG-----NKLLLPLDGKPLLRHALDAALAAGLSRVIVVLGAEADAVRAALA----GLPVVV-VI 68 (186)
T ss_pred CeEEEECCC--CCCCCCC-----CceeCeeCCeeHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhc----CCCeEE-Ee
Confidence 468999999 9999988 9999999999999999999865 66666654433433332 223332 22
Q ss_pred cCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCC
Q 016989 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGG 135 (379)
Q Consensus 84 ~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~ 135 (379)
.+....|++.+++.+++.+.. ..+.+++++||+++ ...++.+++.+...++
T Consensus 69 ~~~~~~G~~~~i~~al~~~~~-~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~ 121 (186)
T cd04182 69 NPDWEEGMSSSLAAGLEALPA-DADAVLILLADQPLVTAETLRALIDAFREDGA 121 (186)
T ss_pred CCChhhCHHHHHHHHHHhccc-cCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCC
Confidence 233446999999999988763 23579999999988 5568888887654333
No 77
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.41 E-value=7.1e-13 Score=117.57 Aligned_cols=135 Identities=16% Similarity=0.155 Sum_probs=77.0
Q ss_pred ccccccccCCceEEEEEcccchhhcCCccchhhcchHHHHhhhhcC-------Ccc---ccCCCCCCCeEEecCeEECCC
Q 016989 232 QDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTS-------PNL---LASGDGTKNATIIGDVYVHPS 301 (379)
Q Consensus 232 ~d~l~~l~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~l~~~~~~~-------~~~---~~~~~~~~~~~i~~~~~i~~~ 301 (379)
+|.++.|.+.. ++..+|||.|+ ++|+++++.++..+.... +.. .......+++.+.+++.||++
T Consensus 31 ~~~~~~~~~~~---~~~~~gyW~Di---~~yl~an~diL~~~~~~~~~~~~~~~~~~~vg~~~~I~~~a~I~g~v~IG~~ 104 (231)
T TIGR03532 31 PESIKKFGSGH---SGVLFGEWEDI---EPFIEANKDKIKDYRIENDRRNSAIPLLDLKNINARIEPGAIIRDQVIIGDN 104 (231)
T ss_pred chheEEEecCC---cEEEEEeHHHH---HHHHHHhHhhhcceEEeecccccccccccccccccEECCCCEEeCCeEECCC
Confidence 68888887654 78888999999 999999988886543100 011 011123466666677777777
Q ss_pred cEECCCCC--------CCcEE------e-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEE-eccEECC
Q 016989 302 AKIHPTAK--------ENAVV------T-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLP 365 (379)
Q Consensus 302 ~~i~~~~~--------~~~~i------~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i-~~~ii~~ 365 (379)
+.|++++. ++|.| . +++||++|.||.++.|.+. .....-..++|+++|.||.++.| .+++|++
T Consensus 105 ~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~-~~~~~~~~v~IGd~v~IG~gsvI~~g~~Ig~ 183 (231)
T TIGR03532 105 AVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGV-IEPPSAKPVVIEDNVLIGANAVILEGVRVGK 183 (231)
T ss_pred CEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccc-cccccCCCeEECCCcEECCCCEEcCCCEECC
Confidence 77766554 22233 2 4444444444444444320 00000012666777777766666 3666666
Q ss_pred Cceecccc
Q 016989 366 NKTLNVSV 373 (379)
Q Consensus 366 ~~~i~~~~ 373 (379)
++.|+.++
T Consensus 184 ~~~Igags 191 (231)
T TIGR03532 184 GAVVAAGA 191 (231)
T ss_pred CCEECCCC
Confidence 66666544
No 78
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=99.38 E-value=3.4e-12 Score=110.62 Aligned_cols=114 Identities=16% Similarity=0.162 Sum_probs=77.1
Q ss_pred EEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEEEcccchHHHHHHHHhh-cccCCccEEEe
Q 016989 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSI-SNELRIPVRYL 83 (379)
Q Consensus 10 ~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~-~~~~~~~i~~~ 83 (379)
.+|||||| .|+||+. +|.|++++|+|||+|+++.+.+ ++|+++...+.+. .+... ....++.+...
T Consensus 2 ~~vILAgG--~s~Rmg~-----~K~ll~~~g~~ll~~~i~~~~~~~~~~i~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~ 73 (190)
T TIGR03202 2 VAIYLAAG--QSRRMGE-----NKLALPLGETTLGSASLKTALSSRLSKVIVVIGEKYAHLS-WLDPYLLADERIMLVCC 73 (190)
T ss_pred eEEEEcCC--ccccCCC-----CceeceeCCccHHHHHHHHHHhCCCCcEEEEeCCccchhh-hhhHhhhcCCCeEEEEC
Confidence 58999999 9999987 8999999999999999976543 5665544322111 11110 11123333332
Q ss_pred cCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHh
Q 016989 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRN 132 (379)
Q Consensus 84 ~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~ 132 (379)
.+...|.+.+++.+++.+.....+.+++++||+|+ ...+..+++....
T Consensus 74 -~~~~~G~~~si~~gl~~~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~ 123 (190)
T TIGR03202 74 -RDACEGQAHSLKCGLRKAEAMGADAVVILLADQPFLTADVINALLALAKR 123 (190)
T ss_pred -CChhhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCHHHHHHHHHHHhh
Confidence 33345888999999987743234689999999999 4457788776543
No 79
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.38 E-value=5.7e-12 Score=109.62 Aligned_cols=105 Identities=21% Similarity=0.375 Sum_probs=73.9
Q ss_pred CCCCCCCceEEEEEecCCCCCCccCCCCCCCCCCCceeCC-cchhHHHHHhcCc----EEEEcccchHHHHHHHHhhccc
Q 016989 1 MGSSEDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGG-QPMVHHPISACKR----IYLVGFYEEREFALYVSSISNE 75 (379)
Q Consensus 1 m~~~~~~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g-~pli~~~i~~l~~----iiv~~~~~~~~i~~~l~~~~~~ 75 (379)
|...|.+++.+|||||| +++||+. +|+|++++| +|+|+|+++.+.. |+|++.. .. + .
T Consensus 1 ~~~~~~~~i~~vILAgG--~s~RmG~-----~K~ll~~~g~~~ll~~~i~~l~~~~~~vvvv~~~-~~-~----~----- 62 (196)
T PRK00560 1 MKNPMIDNIPCVILAGG--KSSRMGE-----NKALLPFGSYSSLLEYQYTRLLKLFKKVYISTKD-KK-F----E----- 62 (196)
T ss_pred CCCccccCceEEEECCc--ccccCCC-----CceEEEeCCCCcHHHHHHHHHHHhCCEEEEEECc-hh-c----c-----
Confidence 67778888999999999 9999976 999999999 9999999999975 6666553 21 1 0
Q ss_pred CCccEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee-cCC-hHHH
Q 016989 76 LRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SFP-LPEM 126 (379)
Q Consensus 76 ~~~~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~-~~d-l~~~ 126 (379)
++..+.........|...++..++...+. +.+++++||+|+ +.+ ++.+
T Consensus 63 ~~~~~v~d~~~~~~gpl~gi~~~l~~~~~---~~vlv~~~D~P~i~~~~i~~l 112 (196)
T PRK00560 63 FNAPFLLEKESDLFSPLFGIINAFLTLQT---PEIFFISVDTPFVSFESIKKL 112 (196)
T ss_pred cCCcEEecCCCCCCCcHHHHHHHHHhcCC---CeEEEEecCcCcCCHHHHHHH
Confidence 11222111122345666677666554432 479999999998 433 4555
No 80
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=99.37 E-value=4.3e-12 Score=104.15 Aligned_cols=105 Identities=24% Similarity=0.409 Sum_probs=83.1
Q ss_pred eEEEEEecCCCCCCccC-CCCCCCCCCCceeCCcchhHHHHHhcCc----EEEEcccchHHHHHHHHhhcccCCccEEEe
Q 016989 9 VVAVIMVGGPTKGTRFR-PLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~-~lt~~~pK~llpi~g~pli~~~i~~l~~----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~ 83 (379)
|.+||+||| +|+||. + -|||++++|||||+|+++.+.+ |++....+...++.|+.. .++++ +
T Consensus 1 m~~iiMAGG--rGtRmg~~-----EKPlleV~GkpLI~~v~~al~~~~d~i~v~isp~tp~t~~~~~~----~gv~v--i 67 (177)
T COG2266 1 MMAIIMAGG--RGTRMGRP-----EKPLLEVCGKPLIDRVLEALRKIVDEIIVAISPHTPKTKEYLES----VGVKV--I 67 (177)
T ss_pred CceEEecCC--cccccCCC-----cCcchhhCCccHHHHHHHHHHhhcCcEEEEeCCCCHhHHHHHHh----cCceE--E
Confidence 579999999 999998 5 8999999999999999999987 666666555558888864 23444 3
Q ss_pred cCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHH
Q 016989 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHR 131 (379)
Q Consensus 84 ~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~ 131 (379)
..+ ..|-...+..+.+.+.. ++|++++|.++ +..+..+++.+.
T Consensus 68 ~tp-G~GYv~Dl~~al~~l~~----P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 68 ETP-GEGYVEDLRFALESLGT----PILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred EcC-CCChHHHHHHHHHhcCC----ceEEEecccccCCHHHHHHHHHHHh
Confidence 323 35788899999998865 49999999999 455777777654
No 81
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=99.35 E-value=4.1e-12 Score=109.20 Aligned_cols=103 Identities=24% Similarity=0.405 Sum_probs=78.0
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc----EEEEcccchHHHHHHHHhhcccCCccEEEec
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRYLR 84 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~ 84 (379)
+.+|||||| .|+||++ ||+|++++|+|||+|+++.+.. |+|++...... . ...++.+.. .
T Consensus 1 ~~~iILAgG--~s~Rmg~-----~K~ll~~~g~~ll~~~i~~l~~~~~~iivv~~~~~~~----~----~~~~~~~v~-~ 64 (181)
T cd02503 1 ITGVILAGG--KSRRMGG-----DKALLELGGKPLLEHVLERLKPLVDEVVISANRDQER----Y----ALLGVPVIP-D 64 (181)
T ss_pred CcEEEECCC--ccccCCC-----CceeeEECCEEHHHHHHHHHHhhcCEEEEECCCChHH----H----hhcCCcEee-C
Confidence 468999999 9999987 9999999999999999999975 77776654432 1 112333322 2
Q ss_pred CCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHH
Q 016989 85 EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAH 130 (379)
Q Consensus 85 ~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~ 130 (379)
.....|...+++.+++.++. +.+++++||+++ ...+..+++.+
T Consensus 65 ~~~~~G~~~si~~~l~~~~~---~~vlv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 65 EPPGKGPLAGILAALRAAPA---DWVLVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred CCCCCCCHHHHHHHHHhcCC---CeEEEEeCCcCCCCHHHHHHHHHhh
Confidence 23457899999999988753 479999999998 45578777765
No 82
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.32 E-value=1.5e-11 Score=107.43 Aligned_cols=109 Identities=25% Similarity=0.412 Sum_probs=80.5
Q ss_pred CCCceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc----EEEEcccchHHHHHHHHhhcccCCccE
Q 016989 5 EDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPV 80 (379)
Q Consensus 5 ~~~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~----iiv~~~~~~~~i~~~l~~~~~~~~~~i 80 (379)
|++.+.+|||||| .|+||+. +|+|++++|+|||+|+++.+.. ++|+++..+. ...... ..+
T Consensus 4 ~~~~~~~vILAgG--~s~Rmg~-----~K~ll~~~g~~ll~~~i~~l~~~~~~ivvv~~~~~~-~~~~~~-------~~~ 68 (200)
T PRK02726 4 VKNNLVALILAGG--KSSRMGQ-----DKALLPWQGVPLLQRVARIAAACADEVYIITPWPER-YQSLLP-------PGC 68 (200)
T ss_pred cCCCceEEEEcCC--CcccCCC-----CceeeEECCEeHHHHHHHHHHhhCCEEEEECCCHHH-HHhhcc-------CCC
Confidence 4456899999999 9999976 8999999999999999999975 6666654322 222111 123
Q ss_pred EEec-CCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHH
Q 016989 81 RYLR-EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHR 131 (379)
Q Consensus 81 ~~~~-~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~ 131 (379)
.++. .....|...+++.+++.++. +.+++++||.++ ...+..+++.+.
T Consensus 69 ~~i~~~~~~~G~~~si~~~l~~~~~---~~vlv~~~D~P~i~~~~i~~l~~~~~ 119 (200)
T PRK02726 69 HWLREPPPSQGPLVAFAQGLPQIKT---EWVLLLACDLPRLTVDVLQEWLQQLE 119 (200)
T ss_pred eEecCCCCCCChHHHHHHHHHhCCC---CcEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 3333 23346899999999998764 479999999999 455788887653
No 83
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=99.31 E-value=1.7e-11 Score=105.79 Aligned_cols=109 Identities=17% Similarity=0.277 Sum_probs=78.4
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc----EEEEcccchHHHHHHHHhhcccCCccEEEec
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRYLR 84 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~ 84 (379)
+.+|||||| .|+||+. .||+|++++|+|||+|+++.+.. |+|++...... +.. ...++.+....
T Consensus 1 ~~~iILAgG--~s~Rmg~----~~K~l~~i~g~pll~~~l~~l~~~~~~ivv~~~~~~~~---~~~---~~~~~~~i~~~ 68 (186)
T TIGR02665 1 ISGVILAGG--RARRMGG----RDKGLVELGGKPLIEHVLARLRPQVSDLAISANRNPER---YAQ---AGFGLPVVPDA 68 (186)
T ss_pred CeEEEEcCC--ccccCCC----CCCceeEECCEEHHHHHHHHHHhhCCEEEEEcCCCHHH---Hhh---ccCCCcEEecC
Confidence 368999999 9999974 49999999999999999999875 66666543321 111 11233433222
Q ss_pred CCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHh
Q 016989 85 EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRN 132 (379)
Q Consensus 85 ~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~ 132 (379)
.....|+.++++.+++.++. +.+++++||.++ ...+..+++.+..
T Consensus 69 ~~~~~g~~~si~~al~~~~~---~~vlv~~~D~P~i~~~~i~~l~~~~~~ 115 (186)
T TIGR02665 69 LADFPGPLAGILAGLRWAGT---DWVLTVPCDTPFLPEDLVARLAAALEA 115 (186)
T ss_pred CCCCCCCHHHHHHHHHhcCC---CeEEEEecCCCcCCHHHHHHHHHHhhc
Confidence 23457999999999987743 479999999988 4447777776543
No 84
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=99.31 E-value=1.5e-11 Score=106.86 Aligned_cols=108 Identities=18% Similarity=0.252 Sum_probs=77.0
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc----EEEEcccchHHHHHHHHhhcccCCccEEE
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~ 82 (379)
+.+.+|||||| .|+||+. .||+|+|++|+|||+|+++.+.. |+|++....+. +. ..++.+..
T Consensus 2 ~~~~~vILA~G--~s~Rm~~----~~K~ll~~~g~~ll~~~i~~l~~~~~~i~vv~~~~~~~----~~----~~~~~~v~ 67 (193)
T PRK00317 2 PPITGVILAGG--RSRRMGG----VDKGLQELNGKPLIQHVIERLAPQVDEIVINANRNLAR----YA----AFGLPVIP 67 (193)
T ss_pred CCceEEEEcCC--CcccCCC----CCCceeEECCEEHHHHHHHHHhhhCCEEEEECCCChHH----HH----hcCCcEEe
Confidence 45899999999 9999953 49999999999999999999965 66665543221 11 12333322
Q ss_pred ecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHH
Q 016989 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHR 131 (379)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~ 131 (379)
.......|...+++.+++..+. +.+++++||.++ ...+..+++.+.
T Consensus 68 ~~~~~~~g~~~~i~~~l~~~~~---~~vlv~~~D~P~i~~~~i~~l~~~~~ 115 (193)
T PRK00317 68 DSLADFPGPLAGILAGLKQART---EWVLVVPCDTPFIPPDLVARLAQAAG 115 (193)
T ss_pred CCCCCCCCCHHHHHHHHHhcCC---CeEEEEcCCcCCCCHHHHHHHHHhhh
Confidence 1112236888999988886542 479999999998 455788887543
No 85
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=99.28 E-value=3.3e-10 Score=99.58 Aligned_cols=208 Identities=20% Similarity=0.225 Sum_probs=120.5
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccch-HHHHHHHHhhcccCCccEE
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEE-REFALYVSSISNELRIPVR 81 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~-~~i~~~l~~~~~~~~~~i~ 81 (379)
+.+||+||| .|+||+. ..||.+++++|+|+|.|+++.|.+ |+|+++... +.+++.+.. .++.
T Consensus 1 V~aIilAaG--~G~R~g~---~~pKQf~~l~Gkpvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~------~~v~ 69 (221)
T PF01128_consen 1 VAAIILAAG--SGSRMGS---GIPKQFLELGGKPVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK------KKVK 69 (221)
T ss_dssp EEEEEEESS---STCCTS---SS-GGGSEETTEEHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH------TTEE
T ss_pred CEEEEeCCc--cchhcCc---CCCCeeeEECCeEeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC------CCEE
Confidence 468999999 9999987 789999999999999999999976 666655443 345555543 3344
Q ss_pred EecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeC
Q 016989 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADP 159 (379)
Q Consensus 82 ~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~ 159 (379)
++. ......++++.++..+.... +.++++.|=.|| ...+.++++...+ +..+.+.+.+.. -.....++
T Consensus 70 iv~--GG~tR~~SV~ngL~~l~~~~-d~VlIHDaaRPfv~~~~i~~~i~~~~~-~~~aai~~~p~~------DTik~v~~ 139 (221)
T PF01128_consen 70 IVE--GGATRQESVYNGLKALAEDC-DIVLIHDAARPFVSPELIDRVIEAARE-GHGAAIPALPVT------DTIKRVDD 139 (221)
T ss_dssp EEE----SSHHHHHHHHHHCHHCTS-SEEEEEETTSTT--HHHHHHHHHHHHH-TCSEEEEEEE-S------SEEEEEST
T ss_pred Eec--CChhHHHHHHHHHHHHHcCC-CEEEEEccccCCCCHHHHHHHHHHHHh-hcCcEEEEEecc------ccEEEEec
Confidence 443 34567899999999987643 689999999999 4558888887665 233556666652 13334442
Q ss_pred CCCcEEEeeecCCCcccceeee-eEEEeCHhh-HHHhhccccccccchhhhhcchhhhhhhhcccccccccccccccccc
Q 016989 160 DTNELLHYTEKPETFVSDLINC-GVYVFTPDI-FNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSP 237 (379)
Q Consensus 160 ~~~~v~~~~ekp~~~~~~~~~~-Giy~~~~~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~ 237 (379)
++.+....+.. .+..+ .=-.|+.+. ++.+...... ... .+|- ..++..
T Consensus 140 -~~~v~~tldR~-----~l~~~QTPQ~F~~~~l~~a~~~a~~~--~~~------------------~tDd----asl~~~ 189 (221)
T PF01128_consen 140 -DGFVTETLDRS-----KLWAVQTPQAFRFELLLEAYEKADEE--GFE------------------FTDD----ASLVEA 189 (221)
T ss_dssp -TSBEEEEETGG-----GEEEEEEEEEEEHHHHHHHHHTHHHH--THH------------------HSSH----HHHHHH
T ss_pred -CCcccccCCHH-----HeeeecCCCeecHHHHHHHHHHHHhc--CCC------------------ccCH----HHHHHH
Confidence 56666544431 11111 112344333 3333322100 000 0010 112222
Q ss_pred ccCCceEEEEEcccchhhcCCccchhhcchHH
Q 016989 238 LAGKKQLYTYETMDFWEQIKTPGMSLKCSGLY 269 (379)
Q Consensus 238 l~~~~~v~~~~~~~~w~~i~t~~d~~~a~~~~ 269 (379)
+ +.++...+-+..-.-+.+|+|+..|..++
T Consensus 190 ~--g~~v~~V~G~~~N~KIT~peDl~~ae~ll 219 (221)
T PF01128_consen 190 A--GKKVAIVEGSPRNIKITTPEDLELAEALL 219 (221)
T ss_dssp T--TS-EEEEE--TTG----SHHHHHHHHHHH
T ss_pred c--CCCEEEEeCCCCceeECCHHHHHHHHHHh
Confidence 2 56777776655667889999998876544
No 86
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=99.27 E-value=2.6e-11 Score=104.33 Aligned_cols=109 Identities=23% Similarity=0.394 Sum_probs=78.5
Q ss_pred CCceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc----EEEEcccchHHHHHHHHhhcccCCccEE
Q 016989 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVR 81 (379)
Q Consensus 6 ~~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~----iiv~~~~~~~~i~~~l~~~~~~~~~~i~ 81 (379)
++.|.+|||||| +++|| . +|+|++++|+||++|+++.|.. ++|+...... .| ..++.++.
T Consensus 2 ~~~~~~vILAGG--~srRm-~-----dK~l~~~~g~~lie~v~~~L~~~~~~vvi~~~~~~~---~~-----~~~g~~vv 65 (192)
T COG0746 2 MTPMTGVILAGG--KSRRM-R-----DKALLPLNGRPLIEHVIDRLRPQVDVVVISANRNQG---RY-----AEFGLPVV 65 (192)
T ss_pred CCCceEEEecCC--ccccc-c-----ccccceeCCeEHHHHHHHHhcccCCEEEEeCCCchh---hh-----hccCCcee
Confidence 456899999999 99999 6 9999999999999999999998 3344343322 11 12344443
Q ss_pred EecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee-cCC-hHHHHHHHHhcC
Q 016989 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SFP-LPEMLDAHRNYG 134 (379)
Q Consensus 82 ~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~-~~d-l~~~l~~~~~~~ 134 (379)
.-..... |...+++.+++.... +.+++++||+++ ..+ +..+.....+.+
T Consensus 66 ~D~~~~~-GPL~Gi~~al~~~~~---~~~~v~~~D~P~i~~~lv~~l~~~~~~~~ 116 (192)
T COG0746 66 PDELPGF-GPLAGILAALRHFGT---EWVLVLPCDMPFIPPELVERLLSAFKQTG 116 (192)
T ss_pred ecCCCCC-CCHHHHHHHHHhCCC---CeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence 3222222 999999999998874 479999999999 443 566666554433
No 87
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=99.26 E-value=4.9e-11 Score=107.33 Aligned_cols=129 Identities=19% Similarity=0.322 Sum_probs=88.2
Q ss_pred CCCCC-CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccc-hHHHHHHHHhhc
Q 016989 2 GSSED-DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYE-EREFALYVSSIS 73 (379)
Q Consensus 2 ~~~~~-~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~-~~~i~~~l~~~~ 73 (379)
+.+|+ +.+.+|||||| .|+||+. ..||+|++++|+|+|+|+++.+.. |+|+++.. .+.+++.+..
T Consensus 17 ~~~~~~~~i~aIILAAG--~gsRmg~---~~pKqll~l~Gkpll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~-- 89 (252)
T PLN02728 17 SAVVKEKSVSVILLAGG--VGKRMGA---NMPKQYLPLLGQPIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVEN-- 89 (252)
T ss_pred ccccccCceEEEEEccc--ccccCCC---CCCcceeEECCeEHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHh--
Confidence 44454 45789999999 9999975 689999999999999999999974 66665543 3334444432
Q ss_pred ccCCccEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEe
Q 016989 74 NELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKV 144 (379)
Q Consensus 74 ~~~~~~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~ 144 (379)
++.++.++. ...+..++++.++..+..+ .+.++++.++.|+ ...+..+++...+.+ +.++..+.
T Consensus 90 --~~~~i~~v~--gg~~r~~SV~~gl~~l~~~-~~~VlihDaarP~vs~~~i~~li~~~~~~g--a~i~~~~~ 155 (252)
T PLN02728 90 --IDVPLKFAL--PGKERQDSVFNGLQEVDAN-SELVCIHDSARPLVTSADIEKVLKDAAVHG--AAVLGVPV 155 (252)
T ss_pred --cCCceEEcC--CCCchHHHHHHHHHhccCC-CCEEEEecCcCCCCCHHHHHHHHHHHhhCC--eEEEeecc
Confidence 334454442 2345678899998887532 3456777777888 445788888776655 34555543
No 88
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.23 E-value=6.9e-11 Score=87.42 Aligned_cols=71 Identities=13% Similarity=0.221 Sum_probs=58.5
Q ss_pred CCeEEecCeEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCc
Q 016989 288 KNATIIGDVYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNK 367 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~ 367 (379)
+++.+. ++.|++++.|+ +++.|.+|+|+++|.|++++.|.+ |+|++++.|++++.|.+|+|++++
T Consensus 10 ~~~~i~-~~~Ig~~~~I~----~~~~i~~s~i~~~~~ig~~~~l~~----------svi~~~~~i~~~~~v~~~ii~~~~ 74 (81)
T cd04652 10 EKTSIK-RSVIGANCKIG----KRVKITNCVIMDNVTIEDGCTLEN----------CIIGNGAVIGEKCKLKDCLVGSGY 74 (81)
T ss_pred CCCEEe-CcEECCCCEEC----CCCEEeCcEEeCCCEECCCCEEec----------cEEeCCCEECCCCEEccCEECCCc
Confidence 344443 35566666665 445788999999999999999977 999999999999999999999999
Q ss_pred eecccc
Q 016989 368 TLNVSV 373 (379)
Q Consensus 368 ~i~~~~ 373 (379)
.|+++.
T Consensus 75 ~i~~~~ 80 (81)
T cd04652 75 RVEAGT 80 (81)
T ss_pred EeCCCC
Confidence 999874
No 89
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.21 E-value=1.2e-10 Score=85.91 Aligned_cols=74 Identities=18% Similarity=0.213 Sum_probs=58.2
Q ss_pred CCeEEecCeEECCCcEECCCCC--CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEec-cEEC
Q 016989 288 KNATIIGDVYVHPSAKIHPTAK--ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTN-SIVL 364 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~--~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~-~ii~ 364 (379)
+++.|++++.|++++.|+++|. +++.|.+|+|+++|.|+++++|.+ |++++++.|++++.+.+ ++|+
T Consensus 4 ~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~----------sii~~~~~v~~~~~~~~~~~ig 73 (80)
T cd05824 4 PSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKS----------SIVGWNSTVGRWTRLENVTVLG 73 (80)
T ss_pred CCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeC----------CEEeCCCEECCCcEEecCEEEC
Confidence 3445555555555555555555 667899999999999999999988 99999999999999975 8999
Q ss_pred CCceecc
Q 016989 365 PNKTLNV 371 (379)
Q Consensus 365 ~~~~i~~ 371 (379)
++++|++
T Consensus 74 ~~~~i~~ 80 (80)
T cd05824 74 DDVTIKD 80 (80)
T ss_pred CceEECC
Confidence 9998874
No 90
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.19 E-value=2.8e-10 Score=96.18 Aligned_cols=202 Identities=16% Similarity=0.124 Sum_probs=136.0
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccchHHHHHHHHhhcccCCccE
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPV 80 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~~~i~~~l~~~~~~~~~~i 80 (379)
++..|||+|.| ||.--| .|.+.+++|+|||.|+|+.+.+ |+|.+. .++ +.+. ...+|.++
T Consensus 2 ~~~iAiIpAR~---gSKgI~-----~KNi~~~~gkpLi~~~I~aA~ns~~fd~VviSsD-s~~-Il~~----A~~ygak~ 67 (228)
T COG1083 2 MKNIAIIPARG---GSKGIK-----NKNIRKFGGKPLIGYTIEAALNSKLFDKVVISSD-SEE-ILEE----AKKYGAKV 67 (228)
T ss_pred cceEEEEeccC---CCCcCC-----ccchHHhCCcchHHHHHHHHhcCCccceEEEcCC-cHH-HHHH----HHHhCccc
Confidence 45689999999 777777 7999999999999999999987 555544 333 3332 34466776
Q ss_pred EEecCCC----CCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeE
Q 016989 81 RYLREDK----PHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGE 154 (379)
Q Consensus 81 ~~~~~~~----~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~ 154 (379)
.+.+..+ ...+-.+++++.+..+.+ .+.++.+++-.++ ..+++..++.+.+++.+..+.+.+. +...|..
T Consensus 68 ~~~Rp~~LA~D~ast~~~~lh~le~~~~~-~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~e~---e~~p~k~ 143 (228)
T COG1083 68 FLKRPKELASDRASTIDAALHALESFNID-EDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAVEC---EHHPYKA 143 (228)
T ss_pred cccCChhhccCchhHHHHHHHHHHHhccc-cCeeEEeccCccccchhHHHHHHHHHhcCCCcceEEEeec---ccchHHH
Confidence 5444321 233345566677766543 2468899999988 6789999999999888877777765 3333433
Q ss_pred EEEeCCCCcEEEeeecCC-------CcccceeeeeEEEeCHhhHHHhhccccccccchhhhhcchhhhhhhhcccccccc
Q 016989 155 LVADPDTNELLHYTEKPE-------TFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDF 227 (379)
Q Consensus 155 v~~d~~~~~v~~~~ekp~-------~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (379)
...+ ++.+..+.+.|. .++..-.++.+|+++++.|..-....
T Consensus 144 f~~~--~~~~~~~~~~~~~~~rrQ~Lpk~Y~~NgaiYi~~~~~l~e~~~~f----------------------------- 192 (228)
T COG1083 144 FSLN--NGEVKPVNEDPDFETRRQDLPKAYRENGAIYINKKDALLENDCFF----------------------------- 192 (228)
T ss_pred HHhc--CCceeecccCCccccccccchhhhhhcCcEEEehHHHHhhcCcee-----------------------------
Confidence 3332 477887777652 23344557889999988776433211
Q ss_pred ccccccccccccCCceEEEEEccc-chhhcCCccchhhcchHHH
Q 016989 228 VRLDQDILSPLAGKKQLYTYETMD-FWEQIKTPGMSLKCSGLYL 270 (379)
Q Consensus 228 ~~l~~d~l~~l~~~~~v~~~~~~~-~w~~i~t~~d~~~a~~~~l 270 (379)
..+...|..+. ...||++..|+..+..++.
T Consensus 193 -------------~~~~~~y~m~~~~~~DID~~~Dl~iae~l~~ 223 (228)
T COG1083 193 -------------IPNTILYEMPEDESIDIDTELDLEIAENLIF 223 (228)
T ss_pred -------------cCCceEEEcCcccccccccHHhHHHHHHHhh
Confidence 12333444433 4689999999998876654
No 91
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=99.18 E-value=1.8e-10 Score=100.79 Aligned_cols=127 Identities=19% Similarity=0.262 Sum_probs=93.6
Q ss_pred CCceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEccc-chHHHHHHHHhhcccCCc
Q 016989 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFY-EEREFALYVSSISNELRI 78 (379)
Q Consensus 6 ~~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~-~~~~i~~~l~~~~~~~~~ 78 (379)
++.+.+|||||| .|+||.. ..||.+++++|+|||+|+++.|.. |+|+++. ....+.++.. ...+.
T Consensus 2 ~~~~~~vilAaG--~G~R~~~---~~pKq~l~l~g~pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~---~~~~~ 73 (230)
T COG1211 2 RMMVSAVILAAG--FGSRMGN---PVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPK---LSADK 73 (230)
T ss_pred CceEEEEEEcCc--cccccCC---CCCceEEEECCEEehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhh---hccCC
Confidence 356799999999 9999999 899999999999999999999986 6676665 3334544443 11223
Q ss_pred cEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCceEEEEEEe
Q 016989 79 PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKV 144 (379)
Q Consensus 79 ~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ti~~~~~ 144 (379)
.+.++. ......++++.+++.+....++.|+|+.+-.+| ...+.++++... +..+.+++.+.
T Consensus 74 ~v~~v~--GG~~R~~SV~~gL~~~~~~~~~~VlvHDaaRPf~~~~~i~~li~~~~--~~~aai~alpv 137 (230)
T COG1211 74 RVEVVK--GGATRQESVYNGLQALSKYDSDWVLVHDAARPFLTPKLIKRLIELAD--KYGAAILALPV 137 (230)
T ss_pred eEEEec--CCccHHHHHHHHHHHhhccCCCEEEEeccccCCCCHHHHHHHHHhhc--cCCcEEEEeec
Confidence 455553 445678999999999885335789999999999 456888885433 23455666655
No 92
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=99.15 E-value=2e-10 Score=109.49 Aligned_cols=115 Identities=18% Similarity=0.221 Sum_probs=79.9
Q ss_pred ceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc----EEEEcccchHHHHHHHHhhcccCCccEEEe
Q 016989 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (379)
Q Consensus 8 ~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~ 83 (379)
.+.+|||||| .|+||+. .||+|++++|+|||+|+++.+.. |+|+.......+.+++. +..+...
T Consensus 5 ~i~~VILAgG--~s~Rmgg----~~K~ll~i~Gkpll~~~i~~l~~~~~~iivvv~~~~~~~~~~~~------~~~~i~d 72 (366)
T PRK14489 5 QIAGVILAGG--LSRRMNG----RDKALILLGGKPLIERVVDRLRPQFARIHLNINRDPARYQDLFP------GLPVYPD 72 (366)
T ss_pred CceEEEEcCC--cccCCCC----CCCceeEECCeeHHHHHHHHHHhhCCEEEEEcCCCHHHHHhhcc------CCcEEec
Confidence 5789999999 9999951 49999999999999999999875 55533333332333221 1222221
Q ss_pred cCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCce
Q 016989 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMG 137 (379)
Q Consensus 84 ~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ 137 (379)
......|...+++.+++.++. +.+++++||+++ ...+..+++.+...++++
T Consensus 73 ~~~g~~G~~~si~~gl~~~~~---~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~~ 125 (366)
T PRK14489 73 ILPGFQGPLSGILAGLEHADS---EYLFVVACDTPFLPENLVKRLSKALAIEGADI 125 (366)
T ss_pred CCCCCCChHHHHHHHHHhcCC---CcEEEeeCCcCCCCHHHHHHHHHHhhccCCeE
Confidence 222335888999999887753 469999999988 445788887655545444
No 93
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=99.14 E-value=3.4e-10 Score=95.72 Aligned_cols=115 Identities=20% Similarity=0.300 Sum_probs=84.8
Q ss_pred CCceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc-----EEE-EcccchHHHHHHHHhhcccCCcc
Q 016989 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYL-VGFYEEREFALYVSSISNELRIP 79 (379)
Q Consensus 6 ~~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~-----iiv-~~~~~~~~i~~~l~~~~~~~~~~ 79 (379)
...+.+|||||| .|+||+. +|-|+|+.|+|+++++++.+.+ ++| +++.......... ...+..
T Consensus 3 ~~~v~~VvLAAG--rssRmG~-----~KlLap~~g~plv~~~~~~a~~a~~~~vivV~g~~~~~~~~a~~----~~~~~~ 71 (199)
T COG2068 3 PSTVAAVVLAAG--RSSRMGQ-----PKLLAPLDGKPLVRASAETALSAGLDRVIVVTGHRVAEAVEALL----AQLGVT 71 (199)
T ss_pred CcceEEEEEccc--ccccCCC-----cceecccCCCcHHHHHHHHHHhcCCCeEEEEeCcchhhHHHhhh----ccCCeE
Confidence 356899999999 9999997 9999999999999999998875 554 4444222222222 122334
Q ss_pred EEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhc
Q 016989 80 VRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNY 133 (379)
Q Consensus 80 i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~ 133 (379)
+.+. .+...|.+.+++.+......+. +.++++.||+++ ..++..+++.+...
T Consensus 72 ~v~n-pd~~~Gls~Sl~ag~~a~~~~~-~~v~~~lgDmP~V~~~t~~rl~~~~~~~ 125 (199)
T COG2068 72 VVVN-PDYAQGLSTSLKAGLRAADAEG-DGVVLMLGDMPQVTPATVRRLIAAFRAR 125 (199)
T ss_pred EEeC-cchhhhHhHHHHHHHHhcccCC-CeEEEEeCCCCCCCHHHHHHHHHhcccc
Confidence 4333 3445799999999999887543 479999999998 67789988876654
No 94
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.14 E-value=3e-10 Score=83.54 Aligned_cols=68 Identities=24% Similarity=0.316 Sum_probs=53.2
Q ss_pred CeEEecCeEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEec-cEECCCc
Q 016989 289 NATIIGDVYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTN-SIVLPNK 367 (379)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~-~ii~~~~ 367 (379)
++.+.+ +.|+++++|+ +++.+.+|+|+++|.|+++++|.+ |+|+++|.|++++.+.+ +++++++
T Consensus 11 ~~~i~~-s~ig~~~~Ig----~~~~i~~svi~~~~~i~~~~~i~~----------svv~~~~~i~~~~~i~~~~~ig~~~ 75 (79)
T cd03356 11 NAIIKN-SVIGDNVRIG----DGVTITNSILMDNVTIGANSVIVD----------SIIGDNAVIGENVRVVNLCIIGDDV 75 (79)
T ss_pred CCEEeC-CEECCCCEEC----CCCEEeCCEEeCCCEECCCCEEEC----------CEECCCCEECCCCEEcCCeEECCCe
Confidence 344443 5555666665 445688899999999999999887 99999999999999976 9999998
Q ss_pred eecc
Q 016989 368 TLNV 371 (379)
Q Consensus 368 ~i~~ 371 (379)
.|++
T Consensus 76 ~i~~ 79 (79)
T cd03356 76 VVED 79 (79)
T ss_pred EECc
Confidence 8874
No 95
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.12 E-value=2.2e-10 Score=94.86 Aligned_cols=90 Identities=22% Similarity=0.253 Sum_probs=51.7
Q ss_pred cCCccccCCCCCCCeEEecCeEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCC
Q 016989 276 TSPNLLASGDGTKNATIIGDVYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDE 355 (379)
Q Consensus 276 ~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~ 355 (379)
..|.+......++++.+.++|.||+++.||++++-..-.++-.||.+|.|.++|.|+...- ..+.||++|+||++
T Consensus 10 ~~P~i~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~-----~p~~IG~~vtIGH~ 84 (176)
T COG0663 10 LSPKIDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPG-----YPVTIGDDVTIGHG 84 (176)
T ss_pred CCCCCCCceEECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCC-----CCeEECCCcEEcCc
Confidence 4555555556689999999999999999999998222223444444444444444443211 11444444444444
Q ss_pred cEEeccEECCCceec
Q 016989 356 VVVTNSIVLPNKTLN 370 (379)
Q Consensus 356 ~~i~~~ii~~~~~i~ 370 (379)
|.|++|.|++++.||
T Consensus 85 aivHGc~Ig~~~lIG 99 (176)
T COG0663 85 AVVHGCTIGDNVLIG 99 (176)
T ss_pred cEEEEeEECCCcEEe
Confidence 444444444444444
No 96
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.08 E-value=5.4e-10 Score=86.74 Aligned_cols=71 Identities=18% Similarity=0.260 Sum_probs=60.9
Q ss_pred CCeEEecCeEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCc
Q 016989 288 KNATIIGDVYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNK 367 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~ 367 (379)
+++.+ .++.||+++.|+ + +.|.+|+|+++|.|+++++|.+ |+|++++.|++++.+.+|+|++++
T Consensus 6 ~~~~i-~~s~Ig~~~~I~-~----~~I~~svi~~~~~Ig~~~~I~~----------siI~~~~~Ig~~~~i~~siig~~~ 69 (104)
T cd04651 6 RRGEV-KNSLVSEGCIIS-G----GTVENSVLFRGVRVGSGSVVED----------SVIMPNVGIGRNAVIRRAIIDKNV 69 (104)
T ss_pred CCCEE-EeEEECCCCEEc-C----eEEEeCEEeCCCEECCCCEEEE----------eEEcCCCEECCCCEEEeEEECCCC
Confidence 45555 346777777776 4 4688999999999999999988 999999999999999999999999
Q ss_pred eeccccc
Q 016989 368 TLNVSVH 374 (379)
Q Consensus 368 ~i~~~~~ 374 (379)
.|++++.
T Consensus 70 ~Ig~~~~ 76 (104)
T cd04651 70 VIPDGVV 76 (104)
T ss_pred EECCCCE
Confidence 9999865
No 97
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.08 E-value=4.3e-10 Score=96.83 Aligned_cols=92 Identities=16% Similarity=0.130 Sum_probs=62.0
Q ss_pred CCccccCCCCCCCeEEecCeEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCc
Q 016989 277 SPNLLASGDGTKNATIIGDVYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEV 356 (379)
Q Consensus 277 ~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~ 356 (379)
.|.+.....+++++.+.+++.||+++.|+++|+-...++..+||++|.||++|.|+.. ...+|+|+++|+|+++|
T Consensus 8 ~p~i~~~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~-----~~~~siIg~~~~Ig~~a 82 (192)
T TIGR02287 8 TPVVHPEAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGF-----PGQDTVVEENGHVGHGA 82 (192)
T ss_pred CCcCCCCcEECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEecc-----CCCCCeECCCCEECCCC
Confidence 3444444445688888889999999999987651001135688888888888888532 11237777777777777
Q ss_pred EEeccEECCCceecccc
Q 016989 357 VVTNSIVLPNKTLNVSV 373 (379)
Q Consensus 357 ~i~~~ii~~~~~i~~~~ 373 (379)
.|++|+|++++.||.++
T Consensus 83 ~I~~siIg~~~~IG~ga 99 (192)
T TIGR02287 83 ILHGCIVGRNALVGMNA 99 (192)
T ss_pred EEcCCEECCCCEECCCc
Confidence 77777777777776654
No 98
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.05 E-value=8e-10 Score=81.25 Aligned_cols=63 Identities=24% Similarity=0.365 Sum_probs=55.4
Q ss_pred ECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCceeccccc
Q 016989 298 VHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVH 374 (379)
Q Consensus 298 i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~ 374 (379)
|++++.|++++ .+.+++||++|+|+++++|.+ |+|+++|.|+++|.|.+|+|++++.|++++.
T Consensus 2 ig~~~~I~~~~----~i~~s~ig~~~~Ig~~~~i~~----------svi~~~~~i~~~~~i~~svv~~~~~i~~~~~ 64 (79)
T cd03356 2 IGESTVIGENA----IIKNSVIGDNVRIGDGVTITN----------SILMDNVTIGANSVIVDSIIGDNAVIGENVR 64 (79)
T ss_pred ccCCcEECCCC----EEeCCEECCCCEECCCCEEeC----------CEEeCCCEECCCCEEECCEECCCCEECCCCE
Confidence 56677777543 577899999999999999988 9999999999999999999999999998864
No 99
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.04 E-value=1.5e-09 Score=91.63 Aligned_cols=73 Identities=23% Similarity=0.287 Sum_probs=50.7
Q ss_pred CCeEEecCeEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCC
Q 016989 288 KNATIIGDVYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPN 366 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~ 366 (379)
+++.+.++++||+++.|++ ++.|. +++||++|.|++++.|.+ |+|++++.|++++.+.+|+|+++
T Consensus 28 ~~a~i~~~v~Ig~~~~I~~----~~~i~~~~~Ig~~~~I~~~~~i~~----------siig~~~~I~~~~~i~~siIg~~ 93 (163)
T cd05636 28 SGAYIEGPVIIGKGCEIGP----NAYIRGYTVLGDGCVVGNSVEVKN----------SIIMDGTKVPHLNYVGDSVLGEN 93 (163)
T ss_pred CCCEEeCCeEECCCCEECC----CCEEcCCCEECCCCEECCCcEEee----------eEecCCCEeccCCEEecCEECCC
Confidence 3344444444444444443 33455 577777777777777765 89999999999888888899999
Q ss_pred ceeccccc
Q 016989 367 KTLNVSVH 374 (379)
Q Consensus 367 ~~i~~~~~ 374 (379)
+.|++++.
T Consensus 94 ~~I~~~~~ 101 (163)
T cd05636 94 VNLGAGTI 101 (163)
T ss_pred CEECCCcE
Confidence 88888764
No 100
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.02 E-value=1.4e-09 Score=93.99 Aligned_cols=80 Identities=20% Similarity=0.215 Sum_probs=52.2
Q ss_pred CCCCCeEEecCeEECCCcEECCCCCCCcEEe----ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEec
Q 016989 285 DGTKNATIIGDVYVHPSAKIHPTAKENAVVT----NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTN 360 (379)
Q Consensus 285 ~~~~~~~i~~~~~i~~~~~i~~~~~~~~~i~----~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~ 360 (379)
.+++++.+.+++.||+++.|+++|+ |. +.+||++|.||++|.|+.... .+|+|++++.||++|.+.+
T Consensus 18 ~I~~~a~I~g~V~IG~~~~I~~~av----Irgd~~~i~Ig~~~~Ig~~~~I~~~~~-----~~siIg~~~~Ig~~a~i~g 88 (196)
T PRK13627 18 FVHPSAVLIGDVIVGAGVYIGPLAS----LRGDYGRLIVQAGANLQDGCIMHGYCD-----TDTIVGENGHIGHGAILHG 88 (196)
T ss_pred EECCCCEEECceEECCCCEECCCCE----EecCCccEEECCCCEECCCCEEeCCCC-----CCCEECCCCEECCCcEEee
Confidence 3467788888888888888887765 33 256777777777777755321 1356666666666666666
Q ss_pred cEECCCceecccc
Q 016989 361 SIVLPNKTLNVSV 373 (379)
Q Consensus 361 ~ii~~~~~i~~~~ 373 (379)
|+|++++.||.++
T Consensus 89 ~vIG~~v~IG~ga 101 (196)
T PRK13627 89 CVIGRDALVGMNS 101 (196)
T ss_pred EEECCCCEECcCC
Confidence 6666666666544
No 101
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.01 E-value=1.2e-09 Score=99.32 Aligned_cols=80 Identities=21% Similarity=0.302 Sum_probs=47.0
Q ss_pred cccCCCCCCCeEEecCeEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEE
Q 016989 280 LLASGDGTKNATIIGDVYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV 358 (379)
Q Consensus 280 ~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i 358 (379)
+......++++.+.+++.|++++.|++++ .|+ +++|+++|.||++|.|+++ |+|+.+|+|.+++.|
T Consensus 102 I~~~A~i~~~A~i~~~~~ig~~~vI~~~v----~IG~~~~I~~~~vIg~~~~IG~~---------~~i~~~v~I~~~~~I 168 (338)
T COG1044 102 IHPTAVIDPTATIGKNVSIGPNVVIGAGV----VIGENVVIGAGAVIGENVKIGDG---------TVIHPNVTIYHNVVI 168 (338)
T ss_pred cCccccccCcCccCCCCccCCCeEECCCC----EECCCcEECCCCEECCCcEECCC---------cEEcCCCEEecCcEE
Confidence 33344445666666666666666666544 455 6666666666666666665 666666666666666
Q ss_pred e-ccEECCCceeccc
Q 016989 359 T-NSIVLPNKTLNVS 372 (379)
Q Consensus 359 ~-~~ii~~~~~i~~~ 372 (379)
. +|+|.++++||.+
T Consensus 169 G~~v~I~~GavIG~d 183 (338)
T COG1044 169 GNNVIIHSGAVIGAD 183 (338)
T ss_pred CCceEECCCCEEccC
Confidence 3 6666666666654
No 102
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.00 E-value=1.7e-09 Score=79.89 Aligned_cols=63 Identities=14% Similarity=0.335 Sum_probs=55.7
Q ss_pred ECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCceeccccc
Q 016989 298 VHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVH 374 (379)
Q Consensus 298 i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~ 374 (379)
|++++.|++++ .|.+++||++|.|+++++|.+ |+|++++.|+++|.|.+|++++++.|++++.
T Consensus 2 ig~~~~I~~~~----~i~~~~Ig~~~~I~~~~~i~~----------s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~ 64 (81)
T cd04652 2 VGENTQVGEKT----SIKRSVIGANCKIGKRVKITN----------CVIMDNVTIEDGCTLENCIIGNGAVIGEKCK 64 (81)
T ss_pred ccCCCEECCCC----EEeCcEECCCCEECCCCEEeC----------cEEeCCCEECCCCEEeccEEeCCCEECCCCE
Confidence 56677777543 577899999999999999988 9999999999999999999999999999875
No 103
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=8.5e-10 Score=100.83 Aligned_cols=70 Identities=23% Similarity=0.254 Sum_probs=54.7
Q ss_pred eEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCceeccccc
Q 016989 296 VYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVH 374 (379)
Q Consensus 296 ~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~ 374 (379)
..+|..+.|++ +|.|+ +|.| ..+.||++|.|+.. +.+.+|+|++|++||+|+.|.|||||+++.||+++.
T Consensus 329 ~l~g~d~iv~~----~t~i~~~s~i-k~SviG~nC~Ig~~----~~v~nSilm~nV~vg~G~~IensIIg~gA~Ig~gs~ 399 (433)
T KOG1462|consen 329 ALVGADSIVGD----NTQIGENSNI-KRSVIGSNCDIGER----VKVANSILMDNVVVGDGVNIENSIIGMGAQIGSGSK 399 (433)
T ss_pred eccchhhccCC----Cceeccccee-eeeeecCCccccCC----cEEEeeEeecCcEecCCcceecceecccceecCCCe
Confidence 56666666663 44666 5544 45667888888776 777889999999999999999999999999999876
No 104
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=98.98 E-value=3.3e-09 Score=77.91 Aligned_cols=52 Identities=12% Similarity=0.179 Sum_probs=38.4
Q ss_pred CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEECCCceecc
Q 016989 310 ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTLNV 371 (379)
Q Consensus 310 ~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~~~~~i~~ 371 (379)
+++.|.+++|++++.|+++++|.+ |+|++++.|++++.|. ++++++++.|++
T Consensus 27 ~~~~i~~s~i~~~~~i~~~~~i~~----------~~i~~~~~i~~~~~i~~~~~v~~~~~ig~ 79 (79)
T cd05787 27 KNVVIDNSYIWDDVTIEDGCTIHH----------SIVADGAVIGKGCTIPPGSLISFGVVIGD 79 (79)
T ss_pred CCCEEeCcEEeCCCEECCCCEEeC----------cEEcCCCEECCCCEECCCCEEeCCcEeCc
Confidence 344667777777777777777765 7888888888887775 677777777764
No 105
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=98.98 E-value=3.3e-09 Score=101.38 Aligned_cols=106 Identities=15% Similarity=0.301 Sum_probs=74.3
Q ss_pred CCceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc----EEEEcccchHHHHHHHHhhcccCCccEE
Q 016989 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVR 81 (379)
Q Consensus 6 ~~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~----iiv~~~~~~~~i~~~l~~~~~~~~~~i~ 81 (379)
++.+.+|||||| +|+||+. +|+|++++|+|||+|+++.+.. ++|+.+... ...+ . .+++.+.
T Consensus 172 ~~~i~~iILAGG--~SsRmG~-----~K~ll~~~Gk~ll~~~l~~l~~~~~~vvV~~~~~~--~~~~-~----~~~v~~i 237 (369)
T PRK14490 172 EVPLSGLVLAGG--RSSRMGS-----DKALLSYHESNQLVHTAALLRPHCQEVFISCRAEQ--AEQY-R----SFGIPLI 237 (369)
T ss_pred cCCceEEEEcCC--ccccCCC-----CcEEEEECCccHHHHHHHHHHhhCCEEEEEeCCch--hhHH-h----hcCCcEE
Confidence 355789999999 9999986 9999999999999999999975 555554322 1111 1 1244443
Q ss_pred EecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee-c-CChHHHHHH
Q 016989 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-S-FPLPEMLDA 129 (379)
Q Consensus 82 ~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~-~-~dl~~~l~~ 129 (379)
.. .....|...++..+...... +.++++.||+|+ + ..+..+++.
T Consensus 238 ~d-~~~~~Gpl~gi~~al~~~~~---~~~lv~~~DmP~i~~~~i~~L~~~ 283 (369)
T PRK14490 238 TD-SYLDIGPLGGLLSAQRHHPD---AAWLVVACDLPFLDEATLQQLVEG 283 (369)
T ss_pred eC-CCCCCCcHHHHHHHHHhCCC---CcEEEEeCCcCCCCHHHHHHHHHh
Confidence 32 22345878888888765442 369999999999 3 346666653
No 106
>PLN02296 carbonate dehydratase
Probab=98.97 E-value=2.5e-09 Score=96.63 Aligned_cols=96 Identities=22% Similarity=0.216 Sum_probs=58.6
Q ss_pred CccccCCCCCCCeEEecCeEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeeccc-ccccccceEECCCcEECCCc
Q 016989 278 PNLLASGDGTKNATIIGDVYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGD-FNAKLGITILGEAVGVEDEV 356 (379)
Q Consensus 278 ~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~-~~~~~~~sii~~~~~i~~~~ 356 (379)
|.+.....+.+++.+.+++.||+++.|+++|+-...+.+++||++|.|+++|.|..... ..+...+|+||++|.||++|
T Consensus 53 p~I~~~~~I~p~A~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~a 132 (269)
T PLN02296 53 PVVDKDAFVAPSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSA 132 (269)
T ss_pred CccCCCCEECCCcEEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCc
Confidence 33333334567888888899999999998775111112347777777777777753211 11122336777777777777
Q ss_pred EEeccEECCCceecccc
Q 016989 357 VVTNSIVLPNKTLNVSV 373 (379)
Q Consensus 357 ~i~~~ii~~~~~i~~~~ 373 (379)
.|.+|+|++++.||.++
T Consensus 133 vI~g~~Igd~v~IG~ga 149 (269)
T PLN02296 133 VLHGCTVEDEAFVGMGA 149 (269)
T ss_pred eecCCEECCCcEECCCc
Confidence 66666666666666554
No 107
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=98.97 E-value=2.5e-09 Score=78.54 Aligned_cols=63 Identities=17% Similarity=0.332 Sum_probs=54.6
Q ss_pred ECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCceeccccc
Q 016989 298 VHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVH 374 (379)
Q Consensus 298 i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~ 374 (379)
||+++.|+++| .|.+++|+++|.|++++.|.+ |+|++++.|++++.|.+|+|++++.|++++.
T Consensus 2 ig~~~~I~~~~----~i~~s~ig~~~~ig~~~~i~~----------s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~ 64 (79)
T cd05787 2 IGRGTSIGEGT----TIKNSVIGRNCKIGKNVVIDN----------SYIWDDVTIEDGCTIHHSIVADGAVIGKGCT 64 (79)
T ss_pred ccCCCEECCCC----EEeccEECCCCEECCCCEEeC----------cEEeCCCEECCCCEEeCcEEcCCCEECCCCE
Confidence 56677777554 567899999999999999987 9999999999999999999999999998765
No 108
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=98.95 E-value=3.4e-09 Score=94.44 Aligned_cols=87 Identities=16% Similarity=0.222 Sum_probs=52.5
Q ss_pred CCeEEecCeEECCCcEECCCCC-------CCcEEe-ceEECCCCEECCCcEEeecccccc-----cccceEECCCcEECC
Q 016989 288 KNATIIGDVYVHPSAKIHPTAK-------ENAVVT-NAIVGWKSSIGRWSRVQAEGDFNA-----KLGITILGEAVGVED 354 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~-------~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~-----~~~~sii~~~~~i~~ 354 (379)
+++.+.+++.||+++.|+++.+ +++.|. +++||++|+||++|+|..+....+ ...+++|+++|.||.
T Consensus 105 p~a~i~~ga~Ig~~vvI~p~~Vniga~IGeGt~I~~~a~IG~~v~IG~nv~I~~g~~IgG~~ep~~~~~ViIgDnv~IGa 184 (269)
T TIGR00965 105 PGAAVRQGAFIAKNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGA 184 (269)
T ss_pred CCcEECCCcEECCCCEEeeeEEcCCcEECCCCEECCCcEECCCCEECCCCEEcCCcccCCCcccCCCCCeEECCCCEECC
Confidence 4455555555555555544321 566666 577777778888877777643211 124477777777777
Q ss_pred CcEE-eccEECCCceeccccc
Q 016989 355 EVVV-TNSIVLPNKTLNVSVH 374 (379)
Q Consensus 355 ~~~i-~~~ii~~~~~i~~~~~ 374 (379)
+|.| .+++|+++++|+.++.
T Consensus 185 ~a~I~~GV~IG~gavIGaGav 205 (269)
T TIGR00965 185 RSEIVEGVIVEEGSVISMGVF 205 (269)
T ss_pred CCEEcCCCEECCCCEEeCCCE
Confidence 7777 3666666666666543
No 109
>PLN02472 uncharacterized protein
Probab=98.95 E-value=4.6e-09 Score=93.73 Aligned_cols=96 Identities=16% Similarity=0.184 Sum_probs=52.9
Q ss_pred CccccCCCCCCCeEEecCeEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecccccccc-cceEECCCcEECCCc
Q 016989 278 PNLLASGDGTKNATIIGDVYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKL-GITILGEAVGVEDEV 356 (379)
Q Consensus 278 ~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~-~~sii~~~~~i~~~~ 356 (379)
|.+.......+++.+.+++.||+++.|+++++-..-....+||++|.||++|.|+........+ .+++||++|+||++|
T Consensus 60 p~i~~~~~I~p~a~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s 139 (246)
T PLN02472 60 PKVAVDAYVAPNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYS 139 (246)
T ss_pred CccCCCCEECCCCEEecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCc
Confidence 3333334456888888899999999999877600000124666666666666664321000001 125555555555555
Q ss_pred EEeccEECCCceecccc
Q 016989 357 VVTNSIVLPNKTLNVSV 373 (379)
Q Consensus 357 ~i~~~ii~~~~~i~~~~ 373 (379)
.|.+|+|++++.||.++
T Consensus 140 ~L~~~~Igd~v~IG~~s 156 (246)
T PLN02472 140 LLRSCTIEPECIIGQHS 156 (246)
T ss_pred EECCeEEcCCCEECCCC
Confidence 55555555555555543
No 110
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.95 E-value=4.4e-09 Score=77.48 Aligned_cols=49 Identities=29% Similarity=0.270 Sum_probs=45.5
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCceeccccc
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVH 374 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~ 374 (379)
+++||++|.||++++|.+ |+|+++++|++++.|.+|++++++.|++++.
T Consensus 17 ~~~Ig~~~~Ig~~~~i~~----------sii~~~~~i~~~~~i~~sii~~~~~v~~~~~ 65 (80)
T cd05824 17 NVVIGPNVTIGDGVRLQR----------CVILSNSTVRDHSWVKSSIVGWNSTVGRWTR 65 (80)
T ss_pred CCEECCCCEECCCcEEee----------eEEcCCCEECCCCEEeCCEEeCCCEECCCcE
Confidence 678999999999999987 9999999999999999999999999998764
No 111
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=98.94 E-value=3.4e-08 Score=91.95 Aligned_cols=181 Identities=17% Similarity=0.313 Sum_probs=110.4
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeC---CcchhHHHHHhcCc----------------EEEEcc-cchHHHH
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLG---GQPMVHHPISACKR----------------IYLVGF-YEEREFA 66 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~---g~pli~~~i~~l~~----------------iiv~~~-~~~~~i~ 66 (379)
.++.+|||||| +|||| +...||+|+||+ |+|++++.++.+.. +++.+. ...+.+.
T Consensus 14 ~~va~viLaGG--~GTRL---g~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~~t~~~t~ 88 (323)
T cd04193 14 GKVAVLLLAGG--QGTRL---GFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWYIMTSEATHEETR 88 (323)
T ss_pred CCEEEEEECCC--ccccc---CCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcChhHhHHHH
Confidence 46889999999 99999 458899999998 79999999998853 344444 5556689
Q ss_pred HHHHhhcccCCc---cEEEecCC---------------------CCCChHHHHHHH-----HHhhccCCCCeEEEEcCCe
Q 016989 67 LYVSSISNELRI---PVRYLRED---------------------KPHGSAGALYNF-----RDLIMEDNPSHIFLLNCDV 117 (379)
Q Consensus 67 ~~l~~~~~~~~~---~i~~~~~~---------------------~~~g~~~al~~~-----~~~i~~~~~~~~lv~~gD~ 117 (379)
+|+.+ .+.+|+ .+.+..|. .+.|.++..... ++.+....-+++.+.+.|+
T Consensus 89 ~~~~~-~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN 167 (323)
T cd04193 89 KFFKE-NNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDN 167 (323)
T ss_pred HHHHh-CCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCc
Confidence 99987 345565 34433321 255666554432 3333333346899999999
Q ss_pred ee-cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCCCcEEEeeecCCCcc----------cceeeeeEEEe
Q 016989 118 CC-SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFV----------SDLINCGVYVF 186 (379)
Q Consensus 118 i~-~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~~v~~~~ekp~~~~----------~~~~~~Giy~~ 186 (379)
++ ...=..++-.+.++++++.+-+.+.. ...+.-|.+...+..-.+..+.+-|.... -+..++.+++|
T Consensus 168 ~L~~~~Dp~~lG~~~~~~~~~~~kvv~k~-~~~ekvG~l~~~~g~~~vvEysel~~~~~~~~~~~g~l~f~~~ni~~~~f 246 (323)
T cd04193 168 ILVKVADPVFIGFCISKGADVGAKVVRKR-YPTEKVGVVVLVDGKPQVVEYSEISDELAEKRDADGELQYNAGNIANHFF 246 (323)
T ss_pred ccccccCHHHhHHHHHcCCceEEEEEECC-CCCCceeEEEEECCeEEEEEeecCCHHHHhccCcCCcEecccchHhhhee
Confidence 76 33334456667777888776554432 12344455554311224555555442211 11223445566
Q ss_pred CHhhHHHh
Q 016989 187 TPDIFNAI 194 (379)
Q Consensus 187 ~~~~l~~l 194 (379)
+-+.++.+
T Consensus 247 sl~fl~~~ 254 (323)
T cd04193 247 SLDFLEKA 254 (323)
T ss_pred CHHHHHHH
Confidence 66665544
No 112
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=98.94 E-value=6.4e-09 Score=86.93 Aligned_cols=82 Identities=17% Similarity=0.169 Sum_probs=42.2
Q ss_pred CCCeEEecCeEECCCcEECCCCCCCcEEe----ceEECCCCEECCCcEEeec-----cc-------ccccccceEECCCc
Q 016989 287 TKNATIIGDVYVHPSAKIHPTAKENAVVT----NAIVGWKSSIGRWSRVQAE-----GD-------FNAKLGITILGEAV 350 (379)
Q Consensus 287 ~~~~~i~~~~~i~~~~~i~~~~~~~~~i~----~s~ig~~~~ig~~~~i~~~-----~~-------~~~~~~~sii~~~~ 350 (379)
++++.+.+++.||+++.|+++|+ |. ++.||++|.|+++|.|... .+ ..+.+++++||++|
T Consensus 10 ~~~a~i~g~v~IG~~~~I~~~~~----i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~ 85 (155)
T cd04745 10 HPTAVLIGDVIIGKNCYIGPHAS----LRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRNA 85 (155)
T ss_pred CCCCEEEccEEECCCCEECCCcE----EeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCCC
Confidence 35566666677777777776553 32 2455555555555555210 00 01222235566666
Q ss_pred EECCCcEEe-ccEECCCceeccc
Q 016989 351 GVEDEVVVT-NSIVLPNKTLNVS 372 (379)
Q Consensus 351 ~i~~~~~i~-~~ii~~~~~i~~~ 372 (379)
.|+.++.|. +++|++++.|+.+
T Consensus 86 ~Ig~~~~I~~g~~Ig~~~~Ig~~ 108 (155)
T cd04745 86 LVGMNAVVMDGAVIGEESIVGAM 108 (155)
T ss_pred EECCCCEEeCCCEECCCCEECCC
Confidence 666665553 3555555555554
No 113
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=98.92 E-value=1.1e-08 Score=91.73 Aligned_cols=109 Identities=22% Similarity=0.282 Sum_probs=71.8
Q ss_pred EEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccch--HHHHHHHHhhcccCCccEEE
Q 016989 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEE--REFALYVSSISNELRIPVRY 82 (379)
Q Consensus 11 aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~--~~i~~~l~~~~~~~~~~i~~ 82 (379)
||||||| .++|| + +|.|++++|+|||+|+++.+.. ++|++.... +.+.+++.. .++.+..
T Consensus 2 aiIlA~G--~S~R~-~-----~K~ll~l~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~----~~v~~v~ 69 (233)
T cd02518 2 AIIQARM--GSTRL-P-----GKVLKPLGGKPLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKK----LGVKVFR 69 (233)
T ss_pred EEEeeCC--CCCCC-C-----CCcccccCCccHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHH----cCCeEEE
Confidence 7999999 89999 5 5999999999999999999864 666665442 345555432 2343322
Q ss_pred ecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCce
Q 016989 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMG 137 (379)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~~ 137 (379)
.+. .+.......+.+.. ..+.++++.||+|+ ...++++++.+...+.+.
T Consensus 70 --~~~-~~~l~~~~~~~~~~---~~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~ 120 (233)
T cd02518 70 --GSE-EDVLGRYYQAAEEY---NADVVVRITGDCPLIDPEIIDAVIRLFLKSGADY 120 (233)
T ss_pred --CCc-hhHHHHHHHHHHHc---CCCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCE
Confidence 121 12222222222221 23579999999999 566899999877655544
No 114
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.90 E-value=1.1e-08 Score=78.81 Aligned_cols=33 Identities=9% Similarity=0.009 Sum_probs=30.3
Q ss_pred cceEECCCcEECCCcEEeccEECCCceeccccc
Q 016989 342 GITILGEAVGVEDEVVVTNSIVLPNKTLNVSVH 374 (379)
Q Consensus 342 ~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~ 374 (379)
++|+|++++.+++++.|.+++|++++.|++++.
T Consensus 61 ~~svi~~~~~i~~~~~lg~siIg~~v~ig~~~~ 93 (101)
T cd05635 61 EDSIIEGYSNKQHDGFLGHSYLGSWCNLGAGTN 93 (101)
T ss_pred CccEEcCCCEecCcCEEeeeEECCCCEECCCce
Confidence 349999999999999999999999999999865
No 115
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=98.90 E-value=1.4e-08 Score=80.90 Aligned_cols=83 Identities=12% Similarity=0.041 Sum_probs=59.8
Q ss_pred CCeEEecCeEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEeecccc------cccccceEECCCcEECCCcEEe-
Q 016989 288 KNATIIGDVYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQAEGDF------NAKLGITILGEAVGVEDEVVVT- 359 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~~~~~------~~~~~~sii~~~~~i~~~~~i~- 359 (379)
+++.+.+++.||+++.|+++ +.|. +++||++|.|++++.+.+.... .+.++.++|+++|.|+.++.+.
T Consensus 9 ~~~~i~~~~~Ig~~~~I~~~----~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~ 84 (119)
T cd03358 9 TNVFIENDVKIGDNVKIQSN----VSIYEGVTIEDDVFIGPNVVFTNDLYPRSKIYRKWELKGTTVKRGASIGANATILP 84 (119)
T ss_pred CCcEECCCcEECCCcEECCC----cEEeCCeEECCCcEEcCCeEEecCCCCccccccccccCCcEECCCcEECcCCEEeC
Confidence 44556666666666666644 4564 8999999999999988764332 1236779999999999999885
Q ss_pred ccEECCCceeccccc
Q 016989 360 NSIVLPNKTLNVSVH 374 (379)
Q Consensus 360 ~~ii~~~~~i~~~~~ 374 (379)
++.|++++.|+.++.
T Consensus 85 ~~~ig~~~~i~~~~~ 99 (119)
T cd03358 85 GVTIGEYALVGAGAV 99 (119)
T ss_pred CcEECCCCEEccCCE
Confidence 688888888887543
No 116
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=98.90 E-value=3.1e-10 Score=102.99 Aligned_cols=59 Identities=24% Similarity=0.339 Sum_probs=49.0
Q ss_pred EEEEEecCCCCCCccCCCCCCCCCCCceeC---CcchhHHHHHhcCc-------------EEEEcccchHHHHHHHHhhc
Q 016989 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLG---GQPMVHHPISACKR-------------IYLVGFYEEREFALYVSSIS 73 (379)
Q Consensus 10 ~aVIla~G~~~gtRl~~lt~~~pK~llpi~---g~pli~~~i~~l~~-------------iiv~~~~~~~~i~~~l~~~~ 73 (379)
.+|+|||| .||||+- ..||+|+||+ |+|+|+|.++++.. ++++.....+.+.+|+++..
T Consensus 2 a~viLaGG--~GtRLg~---~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~ 76 (266)
T cd04180 2 AVVLLAGG--LGTRLGK---DGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKIN 76 (266)
T ss_pred EEEEECCC--CccccCC---CCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcC
Confidence 58999999 9999964 8999999999 99999999999952 45555555567899998754
No 117
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=98.89 E-value=1.1e-08 Score=91.96 Aligned_cols=65 Identities=20% Similarity=0.210 Sum_probs=42.9
Q ss_pred CCcEEe-ceEECCCCEECCCcEEeecccccc-----cccceEECCCcEECCCcEE-eccEECCCceeccccc
Q 016989 310 ENAVVT-NAIVGWKSSIGRWSRVQAEGDFNA-----KLGITILGEAVGVEDEVVV-TNSIVLPNKTLNVSVH 374 (379)
Q Consensus 310 ~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~-----~~~~sii~~~~~i~~~~~i-~~~ii~~~~~i~~~~~ 374 (379)
+++.|. ++.||++|.||++|+|..+....+ ...+++|+++|.||.+|.| .+++||++++|+.++.
T Consensus 137 ~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~v 208 (272)
T PRK11830 137 EGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVF 208 (272)
T ss_pred CCcEEccccEECCCCEECCCcEECCCccCCCCccccCcCCeEEcCCCEECCCCEEcCCCEECCCCEEcCCCE
Confidence 455565 677777777777777777643221 1235788888888888877 4667777776666553
No 118
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=98.89 E-value=1.3e-08 Score=95.57 Aligned_cols=106 Identities=14% Similarity=0.236 Sum_probs=75.6
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc----EEEEcccchHHHHHHHHhhcccCCccEEE
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~ 82 (379)
..+.+|||||| +|+||+. +|+|+++.|+||++|+++.+.. ++|+.+.... .. . ...++.+.
T Consensus 159 ~~i~~IILAGG--kSsRMG~-----dKaLL~~~GkpLl~~~ie~l~~~~~~ViVv~~~~~~--~~-~----~~~~v~~I- 223 (346)
T PRK14500 159 TPLYGLVLTGG--KSRRMGK-----DKALLNYQGQPHAQYLYDLLAKYCEQVFLSARPSQW--QG-T----PLENLPTL- 223 (346)
T ss_pred CCceEEEEecc--ccccCCC-----CcccceeCCccHHHHHHHHHHhhCCEEEEEeCchHh--hh-c----cccCCeEE-
Confidence 36789999999 9999986 9999999999999999999886 6666543211 10 0 00112222
Q ss_pred ecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee-c-CChHHHHHHH
Q 016989 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-S-FPLPEMLDAH 130 (379)
Q Consensus 83 ~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~-~-~dl~~~l~~~ 130 (379)
.......|...+++.++..... +.++++.||+|+ + ..+..+++.+
T Consensus 224 ~D~~~~~GPlagI~aaL~~~~~---~~~lVl~cDmP~l~~~~l~~L~~~~ 270 (346)
T PRK14500 224 PDRGESVGPISGILTALQSYPG---VNWLVVACDLAYLNSETVEKLLAHY 270 (346)
T ss_pred eCCCCCCChHHHHHHHHHhCCC---CCEEEEECCcCCCCHHHHHHHHHhh
Confidence 2223356999999999887543 258999999998 4 4467777754
No 119
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.86 E-value=1.6e-08 Score=85.35 Aligned_cols=72 Identities=19% Similarity=0.250 Sum_probs=51.9
Q ss_pred CeEEecCeEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe---------
Q 016989 289 NATIIGDVYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT--------- 359 (379)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~--------- 359 (379)
++.|.+++.|++++.|+ +++.|.+|+|+++|.|++++.+.+ |+|++++.|++++.+.
T Consensus 47 ~~~i~~~~~Ig~~~~I~----~~~~i~~siig~~~~I~~~~~i~~----------siIg~~~~I~~~~~i~~~~~~~~~~ 112 (163)
T cd05636 47 NAYIRGYTVLGDGCVVG----NSVEVKNSIIMDGTKVPHLNYVGD----------SVLGENVNLGAGTITANLRFDDKPV 112 (163)
T ss_pred CCEEcCCCEECCCCEEC----CCcEEeeeEecCCCEeccCCEEec----------CEECCCCEECCCcEEcccCcCCcce
Confidence 33333344444444444 556788899999999999888877 8899999999988873
Q ss_pred ----------------ccEECCCceeccccc
Q 016989 360 ----------------NSIVLPNKTLNVSVH 374 (379)
Q Consensus 360 ----------------~~ii~~~~~i~~~~~ 374 (379)
+++|++++.||.++.
T Consensus 113 ~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~ 143 (163)
T cd05636 113 KVRLKGERVDTGRRKLGAIIGDGVKTGINVS 143 (163)
T ss_pred EEEecCcceecCCcccCcEEcCCeEECCCcE
Confidence 477888888877754
No 120
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=98.86 E-value=1.7e-08 Score=84.23 Aligned_cols=83 Identities=14% Similarity=0.139 Sum_probs=45.8
Q ss_pred CCCCeEEecCeEECCCcEECCCCCCCcEEec----eEECCCCEECCCcEEeecc-----c-------ccccccceEECCC
Q 016989 286 GTKNATIIGDVYVHPSAKIHPTAKENAVVTN----AIVGWKSSIGRWSRVQAEG-----D-------FNAKLGITILGEA 349 (379)
Q Consensus 286 ~~~~~~i~~~~~i~~~~~i~~~~~~~~~i~~----s~ig~~~~ig~~~~i~~~~-----~-------~~~~~~~sii~~~ 349 (379)
.++++.|.+++.||+++.|+++|. |.. .+||++|.|+++|.|.... + .++.+.+++|+++
T Consensus 9 i~~~~~i~~~v~iG~~~~I~~~a~----I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~ 84 (154)
T cd04650 9 VHPTSYVIGDVVIGELTSVWHYAV----IRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNY 84 (154)
T ss_pred ECCCCEEEeeEEECCCCEEcCCeE----EEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCC
Confidence 346666777777777777776653 432 4677777777777765420 0 1222333555555
Q ss_pred cEECCCcEE-eccEECCCceeccc
Q 016989 350 VGVEDEVVV-TNSIVLPNKTLNVS 372 (379)
Q Consensus 350 ~~i~~~~~i-~~~ii~~~~~i~~~ 372 (379)
|.|+.++.+ .+++|++++.|+.+
T Consensus 85 ~~Ig~~~~i~~~~~Ig~~~~vg~~ 108 (154)
T cd04650 85 VIVGMGAILLNGAKIGDHVIIGAG 108 (154)
T ss_pred CEEcCCCEEeCCCEECCCCEECCC
Confidence 555555554 24455555555443
No 121
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=98.83 E-value=2.7e-08 Score=81.54 Aligned_cols=61 Identities=18% Similarity=0.082 Sum_probs=30.7
Q ss_pred cEEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEE-eccEECCCceecccc
Q 016989 312 AVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLNVSV 373 (379)
Q Consensus 312 ~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i-~~~ii~~~~~i~~~~ 373 (379)
+.|. +++||++|.|++++.|.+. ........++|+++|.|+.++.| .++.|++++.|+.++
T Consensus 44 ~~I~~~~~IG~~~~I~~~~~igg~-~~~~~~~~v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~ 106 (139)
T cd03350 44 ATVGSCAQIGKNVHLSAGAVIGGV-LEPLQATPVIIEDDVFIGANCEVVEGVIVGKGAVLAAGV 106 (139)
T ss_pred CEECCCCEECCCCEECCCCEECCc-ccccccCCeEECCCCEECCCCEECCCCEECCCCEEcCCC
Confidence 3443 4555555555555555421 00111123666666666666666 355566655555554
No 122
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=98.83 E-value=1.5e-08 Score=94.71 Aligned_cols=15 Identities=13% Similarity=0.379 Sum_probs=8.1
Q ss_pred eEECCCcEECCCcEE
Q 016989 344 TILGEAVGVEDEVVV 358 (379)
Q Consensus 344 sii~~~~~i~~~~~i 358 (379)
++||++|.||.++.|
T Consensus 196 vvIgd~v~IGa~~~I 210 (324)
T TIGR01853 196 VIIEDDVEIGANTTI 210 (324)
T ss_pred EEECCCcEECCCCEE
Confidence 555555555555555
No 123
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=98.83 E-value=3.7e-08 Score=93.28 Aligned_cols=31 Identities=13% Similarity=0.323 Sum_probs=21.4
Q ss_pred ceEECCCcEECCCcEEe-----ccEECCCceecccc
Q 016989 343 ITILGEAVGVEDEVVVT-----NSIVLPNKTLNVSV 373 (379)
Q Consensus 343 ~sii~~~~~i~~~~~i~-----~~ii~~~~~i~~~~ 373 (379)
+++||++|.||.++.|. +++|+++++|++.+
T Consensus 203 ~v~Ig~~v~IGa~~~I~~~~~~~t~Ig~~~~i~~~v 238 (343)
T PRK00892 203 RVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLV 238 (343)
T ss_pred cEEECCCcEECCCcEEecCccccceeCCCCEEeCCe
Confidence 47888888888888883 45666666665554
No 124
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=7e-09 Score=100.41 Aligned_cols=67 Identities=13% Similarity=0.243 Sum_probs=59.0
Q ss_pred cCeEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEE-eccEECCCceeccc
Q 016989 294 GDVYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLNVS 372 (379)
Q Consensus 294 ~~~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i-~~~ii~~~~~i~~~ 372 (379)
.+.+||.|++|+ .++.|.+|.|++||+||+||+|.. |+||++|+|++||.+ .+|||+.++++|++
T Consensus 349 ~NSVIG~~c~Ig----sN~~I~~S~iw~~v~Igdnc~I~~----------aii~d~v~i~~~~~l~~g~vl~~~VVv~~~ 414 (673)
T KOG1461|consen 349 SNSVIGANCRIG----SNVRIKNSFIWNNVTIGDNCRIDH----------AIICDDVKIGEGAILKPGSVLGFGVVVGRN 414 (673)
T ss_pred ecceecCCCEec----CceEEeeeeeecCcEECCCceEee----------eEeecCcEeCCCcccCCCcEEeeeeEeCCC
Confidence 455677777777 455799999999999999999998 999999999999999 59999999999998
Q ss_pred cc
Q 016989 373 VH 374 (379)
Q Consensus 373 ~~ 374 (379)
..
T Consensus 415 ~~ 416 (673)
T KOG1461|consen 415 FV 416 (673)
T ss_pred cc
Confidence 65
No 125
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.81 E-value=3e-08 Score=83.55 Aligned_cols=83 Identities=20% Similarity=0.298 Sum_probs=49.4
Q ss_pred CCCeEEecCeEECCCcEECCCCCCCcEE----eceEECCCCEECCCcEEeeccc------------------ccccccce
Q 016989 287 TKNATIIGDVYVHPSAKIHPTAKENAVV----TNAIVGWKSSIGRWSRVQAEGD------------------FNAKLGIT 344 (379)
Q Consensus 287 ~~~~~i~~~~~i~~~~~i~~~~~~~~~i----~~s~ig~~~~ig~~~~i~~~~~------------------~~~~~~~s 344 (379)
++++.|.+++.||+++.|+++|. + ..++||++|.|+++|.|.+... ..+.++.+
T Consensus 9 ~~~a~i~g~v~IG~~~~I~~~a~----I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~~ 84 (164)
T cd04646 9 CQESEIRGDVTIGPGTVVHPRAT----IIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEAL 84 (164)
T ss_pred CCCCEEcCceEECCCCEEcCCeE----EecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEee
Confidence 35556666666666666665543 3 2345666666666666654311 12344457
Q ss_pred EECCCcEECCCcEE-eccEECCCceecccc
Q 016989 345 ILGEAVGVEDEVVV-TNSIVLPNKTLNVSV 373 (379)
Q Consensus 345 ii~~~~~i~~~~~i-~~~ii~~~~~i~~~~ 373 (379)
+||++|.||.+|.| .+++|++++.||.++
T Consensus 85 ~IGd~~~Ig~~a~I~~gv~Ig~~~~Igags 114 (164)
T cd04646 85 KIGNNNVFESKSFVGKNVIITDGCIIGAGC 114 (164)
T ss_pred EECCCCEEeCCCEECCCCEECCCCEEeCCe
Confidence 77777777777777 466677776666654
No 126
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=98.81 E-value=3.6e-08 Score=83.49 Aligned_cols=30 Identities=20% Similarity=0.142 Sum_probs=18.5
Q ss_pred eEECCCcEECCCcEEeccEECCCceecccc
Q 016989 344 TILGEAVGVEDEVVVTNSIVLPNKTLNVSV 373 (379)
Q Consensus 344 sii~~~~~i~~~~~i~~~ii~~~~~i~~~~ 373 (379)
++||++|.||.+|.|.++.|++++.|+.++
T Consensus 83 ~~Ig~~~~Ig~~~~I~~~~Ig~~~~Ig~~s 112 (167)
T cd00710 83 AYIGDNCFIGFRSVVFNAKVGDNCVIGHNA 112 (167)
T ss_pred EEECCCCEECCCCEEECCEECCCCEEcCCC
Confidence 666666666666666666666666665543
No 127
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=98.80 E-value=2.3e-08 Score=90.60 Aligned_cols=30 Identities=20% Similarity=0.135 Sum_probs=18.8
Q ss_pred eEECCCcEECCCcEE-eccEECCCceecccc
Q 016989 344 TILGEAVGVEDEVVV-TNSIVLPNKTLNVSV 373 (379)
Q Consensus 344 sii~~~~~i~~~~~i-~~~ii~~~~~i~~~~ 373 (379)
++||++|.|++++.| ++|+||+++.|+.++
T Consensus 103 ~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~ 133 (254)
T cd03351 103 TRIGNNNLLMAYVHVAHDCVIGNNVILANNA 133 (254)
T ss_pred eEECCCCEECCCCEECCCCEECCCcEECCCc
Confidence 666666666666666 466666666665554
No 128
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=98.80 E-value=5.5e-09 Score=97.21 Aligned_cols=86 Identities=13% Similarity=0.220 Sum_probs=52.4
Q ss_pred CCCeEEecCeEECCCcEECCCCC-------------CCcEEeceEECCCCEECCCcEEeeccc--------ccccccceE
Q 016989 287 TKNATIIGDVYVHPSAKIHPTAK-------------ENAVVTNAIVGWKSSIGRWSRVQAEGD--------FNAKLGITI 345 (379)
Q Consensus 287 ~~~~~i~~~~~i~~~~~i~~~~~-------------~~~~i~~s~ig~~~~ig~~~~i~~~~~--------~~~~~~~si 345 (379)
.++..+.+.+.||+++.|+++|+ .+|.+++|.||.+|.||+.++++++.. +..++++|.
T Consensus 278 ~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEvK~a~ 357 (460)
T COG1207 278 EPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEVKKAT 357 (460)
T ss_pred ecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCCCeEeeeEEEeccc
Confidence 46666666666666666666655 446677788888888888888888843 133444444
Q ss_pred ECCCcEECCCcEEeccEECCCceeccc
Q 016989 346 LGEAVGVEDEVVVTNSIVLPNKTLNVS 372 (379)
Q Consensus 346 i~~~~~i~~~~~i~~~ii~~~~~i~~~ 372 (379)
||+++++++-++|.+|.||.++.||.+
T Consensus 358 ig~gsKa~HLtYlGDA~iG~~~NiGAG 384 (460)
T COG1207 358 IGKGSKAGHLTYLGDAEIGENVNIGAG 384 (460)
T ss_pred ccCCccccceeeeccceecCCceeccc
Confidence 455555555445555555555555544
No 129
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=98.79 E-value=2.8e-08 Score=86.29 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=10.9
Q ss_pred CCeEEecCeEECCCcEECCCC
Q 016989 288 KNATIIGDVYVHPSAKIHPTA 308 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~ 308 (379)
+++.|.+++.||+++.|+++|
T Consensus 26 ~~a~i~~~~~Ig~~~~I~~~~ 46 (193)
T cd03353 26 PGVILEGKTVIGEDCVIGPNC 46 (193)
T ss_pred CCCEEeCcCEECCCCEECCCc
Confidence 445555555555555555444
No 130
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=98.79 E-value=5.7e-08 Score=78.42 Aligned_cols=56 Identities=13% Similarity=0.088 Sum_probs=42.1
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCceecccc
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSV 373 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~ 373 (379)
+++||++|.||++++|. ..+....-+.+.||++|.||.+|.| +..||++++|+.++
T Consensus 47 ~a~Ighd~~IG~~~~I~-~~l~G~~~~pV~IG~~~~IG~ga~I-gv~IG~~~vIGaGs 102 (147)
T cd04649 47 GVIVGKGSDVGGGASIM-GTLSGGGNNVISIGKRCLLGANSGI-GISLGDNCIVEAGL 102 (147)
T ss_pred CEEECCCCEECCCCEEE-EECCCCcccCEEECCCCEECCCCEE-eEEECCCCEECCCC
Confidence 68888888888888887 3233333344889999999999988 67777777777765
No 131
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=98.78 E-value=2.7e-08 Score=90.44 Aligned_cols=49 Identities=10% Similarity=0.305 Sum_probs=21.5
Q ss_pred CcEEe-ceEECCCCEECCCcEEeeccc---ccccccceEECCCcEECCCcEEe
Q 016989 311 NAVVT-NAIVGWKSSIGRWSRVQAEGD---FNAKLGITILGEAVGVEDEVVVT 359 (379)
Q Consensus 311 ~~~i~-~s~ig~~~~ig~~~~i~~~~~---~~~~~~~sii~~~~~i~~~~~i~ 359 (379)
++.|. +++||++|.|+++|.|++..- +.++...++||++|.|+++|.|.
T Consensus 44 ~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~~~I~e~~~I~ 96 (262)
T PRK05289 44 HVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNNTIREFVTIN 96 (262)
T ss_pred CCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEECCCCEECCCeEEe
Confidence 33444 455555555555555543100 00111125555555555555553
No 132
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=98.78 E-value=3e-08 Score=86.06 Aligned_cols=76 Identities=14% Similarity=0.154 Sum_probs=45.1
Q ss_pred CCeEEecCeEECCCcEECCCCC--CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEEC
Q 016989 288 KNATIIGDVYVHPSAKIHPTAK--ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVL 364 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~--~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~ 364 (379)
+++.|.+.+.|++++.|+++|. +++.|.++.||++|.|++++.|.+ |+|++++.|++++.|. +++|+
T Consensus 20 ~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~----------~~ig~~~~Ig~~~~I~~~~~Ig 89 (193)
T cd03353 20 VDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEG----------AVIGNGATVGPFAHLRPGTVLG 89 (193)
T ss_pred CCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEe----------eEECCCCEECCccEEcCccEEC
Confidence 4455555555555555555555 566666666666666666666654 6666666666666664 55666
Q ss_pred CCceecccc
Q 016989 365 PNKTLNVSV 373 (379)
Q Consensus 365 ~~~~i~~~~ 373 (379)
+++.|++++
T Consensus 90 ~~~~Ig~~~ 98 (193)
T cd03353 90 EGVHIGNFV 98 (193)
T ss_pred CCCEECCcE
Confidence 555555543
No 133
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=98.78 E-value=2.1e-08 Score=91.12 Aligned_cols=76 Identities=17% Similarity=0.204 Sum_probs=54.6
Q ss_pred CCCCeEEecCeEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-----
Q 016989 286 GTKNATIIGDVYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT----- 359 (379)
Q Consensus 286 ~~~~~~i~~~~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~----- 359 (379)
+++++.|.+++.|++++.|+++| .|+ ++.||++|.|++++.|.+. ++||++|.|+++|.|.
T Consensus 5 I~p~a~I~~~a~Ig~~v~Igp~~----~I~~~v~IG~~~~I~~~~~I~g~---------~~IG~~~~I~~~a~Ig~~~q~ 71 (262)
T PRK05289 5 IHPTAIVEPGAKIGENVEIGPFC----VIGPNVVIGDGTVIGSHVVIDGH---------TTIGKNNRIFPFASIGEDPQD 71 (262)
T ss_pred cCCCCEECCCCEECCCCEECCCe----EECCCCEECCCCEECCCCEEcCc---------cEECCCCEEcccceecCCcee
Confidence 45777777777777777777655 455 7777777777777777766 7777777777777775
Q ss_pred --------ccEECCCceeccccc
Q 016989 360 --------NSIVLPNKTLNVSVH 374 (379)
Q Consensus 360 --------~~ii~~~~~i~~~~~ 374 (379)
.++||+++.|++++.
T Consensus 72 ~~~~g~~~~v~IG~~~~I~e~~~ 94 (262)
T PRK05289 72 LKYKGEPTRLVIGDNNTIREFVT 94 (262)
T ss_pred ecccCCCCeEEECCCCEECCCeE
Confidence 366777777766554
No 134
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=98.77 E-value=2.1e-08 Score=90.86 Aligned_cols=65 Identities=14% Similarity=0.224 Sum_probs=41.5
Q ss_pred CCcEEe-ceEECCCCEECCCcEEeeccc---ccccccceEECCCcEECCCcEEec--------cEECCCceeccccc
Q 016989 310 ENAVVT-NAIVGWKSSIGRWSRVQAEGD---FNAKLGITILGEAVGVEDEVVVTN--------SIVLPNKTLNVSVH 374 (379)
Q Consensus 310 ~~~~i~-~s~ig~~~~ig~~~~i~~~~~---~~~~~~~sii~~~~~i~~~~~i~~--------~ii~~~~~i~~~~~ 374 (379)
+++.|. +++||++|.|++++.|+...- +.++..+++||++|.|+++|.|.+ ++||+++.|++++.
T Consensus 40 ~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~ 116 (254)
T cd03351 40 SHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHRGTAQGGGVTRIGNNNLLMAYVH 116 (254)
T ss_pred CCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEeccccCCCCceEECCCCEECCCCE
Confidence 444454 666666666666666653100 011112489999999999999963 67888888877663
No 135
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=98.76 E-value=2.5e-08 Score=93.19 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=19.6
Q ss_pred eEECCCcEECCCcEEe---------------------ccEECCCceeccccc
Q 016989 344 TILGEAVGVEDEVVVT---------------------NSIVLPNKTLNVSVH 374 (379)
Q Consensus 344 sii~~~~~i~~~~~i~---------------------~~ii~~~~~i~~~~~ 374 (379)
|+||++|.|+++|.|. .++|++++.||+++.
T Consensus 158 ~~IG~~~~I~~~~vIg~~gfg~~~~~~~~~~~i~~~G~vvIgd~v~IGa~~~ 209 (324)
T TIGR01853 158 VQLGKNVIIHSGAVIGSDGFGYAHTANGGHVKIPQIGRVIIEDDVEIGANTT 209 (324)
T ss_pred CEECCCCEECCCcEECCCCccceeccCCcceecCccceEEECCCcEECCCCE
Confidence 6666666666666663 356666666666654
No 136
>PLN02472 uncharacterized protein
Probab=98.76 E-value=4.6e-08 Score=87.30 Aligned_cols=48 Identities=13% Similarity=0.261 Sum_probs=37.8
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEE-eccEECCCceecccc
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLNVSV 373 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i-~~~ii~~~~~i~~~~ 373 (379)
+++||++|.||++|.|.+ |+|+++|.||.+|.| .+++|++++.|+.++
T Consensus 126 ~tvIG~~v~IG~~s~L~~----------~~Igd~v~IG~~svI~~gavIg~~~~Ig~gs 174 (246)
T PLN02472 126 ETLIDRYVTIGAYSLLRS----------CTIEPECIIGQHSILMEGSLVETHSILEAGS 174 (246)
T ss_pred CcEECCCCEECCCcEECC----------eEEcCCCEECCCCEECCCCEECCCCEECCCC
Confidence 688899999999988876 888888888888877 467777777776654
No 137
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=98.75 E-value=4.7e-08 Score=84.59 Aligned_cols=76 Identities=13% Similarity=0.220 Sum_probs=40.9
Q ss_pred CeEEecCeEECCCcEECCCCC--CCcEEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEEC
Q 016989 289 NATIIGDVYVHPSAKIHPTAK--ENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVL 364 (379)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~--~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~ 364 (379)
++.|.+++.|+++++|+++|. .++.|. +++||++|.|++++.+.++ ++|+++|.||.++.|. +++|+
T Consensus 102 ~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~---------~~ig~~~~ig~~~~v~~~~~ig 172 (197)
T cd03360 102 GCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGG---------VTIGEGAFIGAGATIIQGVTIG 172 (197)
T ss_pred CCEEcCCCEECCCCEECCCeEECCCCEECCCCEECCCCEECCCCEEcCC---------cEECCCCEECCCCEEcCCCEEC
Confidence 344444444444444444433 233443 4444555555555544444 7777777777777664 56666
Q ss_pred CCceecccc
Q 016989 365 PNKTLNVSV 373 (379)
Q Consensus 365 ~~~~i~~~~ 373 (379)
+++.|+.+.
T Consensus 173 ~~~~v~~~~ 181 (197)
T cd03360 173 AGAIIGAGA 181 (197)
T ss_pred CCCEECCCC
Confidence 666666544
No 138
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=98.75 E-value=5e-08 Score=85.03 Aligned_cols=49 Identities=10% Similarity=0.177 Sum_probs=27.2
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEECCCceecccc
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTLNVSV 373 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~~~~~i~~~~ 373 (379)
++.||++|.|++++.|.++ +.|+++|.||.++.|. ++.|++++.|+.++
T Consensus 135 ~~~ig~~~~i~~~~~i~~~---------~~ig~~~~ig~~~~v~~~~~i~~~~~i~~~~ 184 (201)
T TIGR03570 135 DCVIGDYVHIAPGVTLSGG---------VVIGEGVFIGAGATIIQGVTIGAGAIVGAGA 184 (201)
T ss_pred CCEECCCCEECCCCEEeCC---------cEECCCCEECCCCEEeCCCEECCCCEECCCC
Confidence 3444444444444444433 6677777777776663 55556555555543
No 139
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=98.74 E-value=3.3e-08 Score=82.44 Aligned_cols=87 Identities=17% Similarity=0.176 Sum_probs=42.7
Q ss_pred CCCeEEecCeEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecc-----c-------ccccccceEECCCcEECC
Q 016989 287 TKNATIIGDVYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEG-----D-------FNAKLGITILGEAVGVED 354 (379)
Q Consensus 287 ~~~~~i~~~~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~-----~-------~~~~~~~sii~~~~~i~~ 354 (379)
++++.|.+++.+|+++.|++++.-.....+++||++|.|+++|.|.+.. + ..+.+++++|+++|.|+.
T Consensus 9 ~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~ 88 (153)
T cd04645 9 APNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDNCLIGM 88 (153)
T ss_pred CCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCCCEECC
Confidence 3455555566666666666554300001123555555555555554310 0 112223366666666666
Q ss_pred CcEEe-ccEECCCceecccc
Q 016989 355 EVVVT-NSIVLPNKTLNVSV 373 (379)
Q Consensus 355 ~~~i~-~~ii~~~~~i~~~~ 373 (379)
++.|. +++|++++.|+.++
T Consensus 89 ~~~v~~~~~ig~~~~ig~~~ 108 (153)
T cd04645 89 GAIILDGAVIGKGSIVAAGS 108 (153)
T ss_pred CCEEcCCCEECCCCEECCCC
Confidence 66664 55555555555443
No 140
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=98.72 E-value=4.7e-08 Score=85.86 Aligned_cols=87 Identities=18% Similarity=0.215 Sum_probs=63.1
Q ss_pred CCCeEEecCeEECCCcEECCCCC--------CCcEEe-ceEECCCCEECCCcEEeeccc-----ccccccceEECCCcEE
Q 016989 287 TKNATIIGDVYVHPSAKIHPTAK--------ENAVVT-NAIVGWKSSIGRWSRVQAEGD-----FNAKLGITILGEAVGV 352 (379)
Q Consensus 287 ~~~~~i~~~~~i~~~~~i~~~~~--------~~~~i~-~s~ig~~~~ig~~~~i~~~~~-----~~~~~~~sii~~~~~i 352 (379)
.+++++-.+++|++|+.++++.+ .++.|. +..+|..++||+||+|+.|.. +...-..++|+++|.|
T Consensus 112 ~p~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVLep~~a~Pv~Igdncli 191 (271)
T COG2171 112 VPGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLI 191 (271)
T ss_pred cCccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeEEecCCCCCCeEECCccEe
Confidence 47777777888888888887444 778887 888888888888888888764 3444455888888888
Q ss_pred CCCcE-EeccEECCCceecccc
Q 016989 353 EDEVV-VTNSIVLPNKTLNVSV 373 (379)
Q Consensus 353 ~~~~~-i~~~ii~~~~~i~~~~ 373 (379)
|.+++ +.++++|++|+|+.++
T Consensus 192 GAns~~veGV~vGdg~VV~aGv 213 (271)
T COG2171 192 GANSEVVEGVIVGDGCVVAAGV 213 (271)
T ss_pred ccccceEeeeEeCCCcEEecce
Confidence 88873 3566666666665554
No 141
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=98.71 E-value=8.3e-07 Score=86.47 Aligned_cols=180 Identities=16% Similarity=0.265 Sum_probs=111.3
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCcee---CCcchhHHHHHhcCc-------------------EEEEcccchHH
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPL---GGQPMVHHPISACKR-------------------IYLVGFYEERE 64 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi---~g~pli~~~i~~l~~-------------------iiv~~~~~~~~ 64 (379)
-++.+|||||| .||||+. ..||+|+|| .|+|++++.++++.. +++++....+.
T Consensus 105 gkvavViLAGG--~GTRLg~---~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~ 179 (482)
T PTZ00339 105 GEVAVLILAGG--LGTRLGS---DKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQ 179 (482)
T ss_pred CCeEEEEECCC--CcCcCCC---CCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHH
Confidence 35899999999 9999975 899999999 599999999998852 34455555567
Q ss_pred HHHHHHhhcccCCcc---EEEecCC----------------------CCCChHHHHHHH-----HHhhccCCCCeEEEEc
Q 016989 65 FALYVSSISNELRIP---VRYLRED----------------------KPHGSAGALYNF-----RDLIMEDNPSHIFLLN 114 (379)
Q Consensus 65 i~~~l~~~~~~~~~~---i~~~~~~----------------------~~~g~~~al~~~-----~~~i~~~~~~~~lv~~ 114 (379)
+++|+.+. ..+|++ |.+..|. .+.|.++..... ++.+....-+++.+..
T Consensus 180 t~~~f~~~-~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~ 258 (482)
T PTZ00339 180 TRQFLEEN-NFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVIS 258 (482)
T ss_pred HHHHHHhc-cccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEe
Confidence 88999763 334432 2221111 155776554432 3334333346899999
Q ss_pred CCeeec-CChHHHHHHHHhcCC-ceEEEEEEeCCCCCCceeEEEEeCCCCcEEEeeecCC-----------Ccccceeee
Q 016989 115 CDVCCS-FPLPEMLDAHRNYGG-MGTILVIKVSAESASQFGELVADPDTNELLHYTEKPE-----------TFVSDLINC 181 (379)
Q Consensus 115 gD~i~~-~dl~~~l~~~~~~~~-~~ti~~~~~~~~~~~~~g~v~~d~~~~~v~~~~ekp~-----------~~~~~~~~~ 181 (379)
.|+++. ..=..++-.+...++ ++.-.+.+.. ..+.-|.+......-.|+.+.|=+. ...-...++
T Consensus 259 vDN~L~k~~DP~flG~~~~~~~~~~~~kvvk~~--~~EkvG~~~~~~g~~~vvEYsEi~~~~~~~~~~~~g~l~f~~gnI 336 (482)
T PTZ00339 259 IDNILAKVLDPEFIGLASSFPAHDVLNKCVKRE--DDESVGVFCLKDYEWQVVEYTEINERILNNDELLTGELAFNYGNI 336 (482)
T ss_pred cCcccccccCHHHhHHHHHCCchhheeeeecCC--CCCceeEEEEeCCcccEEEEeccChhhhhcccccCCeecccccce
Confidence 999973 333445555666666 5433333332 2345576654321225666655221 111245688
Q ss_pred eEEEeCHhhHHHh
Q 016989 182 GVYVFTPDIFNAI 194 (379)
Q Consensus 182 Giy~~~~~~l~~l 194 (379)
..++|+-++++.+
T Consensus 337 ~~h~fsl~fl~~~ 349 (482)
T PTZ00339 337 CSHIFSLDFLKKV 349 (482)
T ss_pred EEEEEEHHHHHHH
Confidence 9999998888755
No 142
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=98.70 E-value=6.1e-08 Score=87.84 Aligned_cols=65 Identities=14% Similarity=0.164 Sum_probs=43.8
Q ss_pred CCcEEe-ceEECCCCEECCCcEEeeccc---ccccccceEECCCcEECCCcEEe--------ccEECCCceeccccc
Q 016989 310 ENAVVT-NAIVGWKSSIGRWSRVQAEGD---FNAKLGITILGEAVGVEDEVVVT--------NSIVLPNKTLNVSVH 374 (379)
Q Consensus 310 ~~~~i~-~s~ig~~~~ig~~~~i~~~~~---~~~~~~~sii~~~~~i~~~~~i~--------~~ii~~~~~i~~~~~ 374 (379)
++|.|. +++||++|.|++++.|+.... +.+...+++||++|.|+++|.|. +++||+++.|++++.
T Consensus 39 ~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~ 115 (254)
T TIGR01852 39 SHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGGGVTRIGNNNLLMAYSH 115 (254)
T ss_pred CCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCcccCCCCcEEECCCCEECCCCE
Confidence 444555 777888888888888764211 01112348999999999999996 457778777766653
No 143
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=98.70 E-value=9.1e-08 Score=85.01 Aligned_cols=78 Identities=17% Similarity=0.155 Sum_probs=52.6
Q ss_pred CCeEEecCeEECCCcEECCCCC--CCcEEe-ceEECCCCEECC--------CcEEeecccccccccceEECCCcEECCCc
Q 016989 288 KNATIIGDVYVHPSAKIHPTAK--ENAVVT-NAIVGWKSSIGR--------WSRVQAEGDFNAKLGITILGEAVGVEDEV 356 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~--~~~~i~-~s~ig~~~~ig~--------~~~i~~~~~~~~~~~~sii~~~~~i~~~~ 356 (379)
+++.|.+++.||+++.|++++. .++.|. ++.||.+|.|.. ++.|+++ +.||.+++|.+++
T Consensus 109 ~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~---------v~IG~gsvI~~g~ 179 (231)
T TIGR03532 109 MGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDN---------VLIGANAVILEGV 179 (231)
T ss_pred cCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCC---------cEECCCCEEcCCC
Confidence 4445555566666666665555 456676 777777777753 4667666 7777777777777
Q ss_pred EE-eccEECCCceeccccc
Q 016989 357 VV-TNSIVLPNKTLNVSVH 374 (379)
Q Consensus 357 ~i-~~~ii~~~~~i~~~~~ 374 (379)
.| .+|+|++++.|.+++.
T Consensus 180 ~Ig~~~~IgagsvV~~di~ 198 (231)
T TIGR03532 180 RVGKGAVVAAGAIVTEDVP 198 (231)
T ss_pred EECCCCEECCCCEEccccC
Confidence 77 3777777777777665
No 144
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.69 E-value=6.1e-08 Score=95.67 Aligned_cols=47 Identities=19% Similarity=0.331 Sum_probs=26.9
Q ss_pred CCeEEecCeEECCCcEECCCCC-------------CCcEEeceEECCCCEECCCcEEeec
Q 016989 288 KNATIIGDVYVHPSAKIHPTAK-------------ENAVVTNAIVGWKSSIGRWSRVQAE 334 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~-------------~~~~i~~s~ig~~~~ig~~~~i~~~ 334 (379)
+++.|.+++.||+++.|+++|+ .++.+.+++||++|.||++++|..+
T Consensus 279 ~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~ 338 (459)
T PRK14355 279 PGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPG 338 (459)
T ss_pred CCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCC
Confidence 3444444444444444444443 4555666677777777777766665
No 145
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=98.69 E-value=7.9e-08 Score=83.17 Aligned_cols=77 Identities=14% Similarity=0.330 Sum_probs=38.9
Q ss_pred CCeEEecCeEECCCcEECCCCC--------CCcEEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEE
Q 016989 288 KNATIIGDVYVHPSAKIHPTAK--------ENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV 358 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~--------~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i 358 (379)
+++.+.+++.+++++.|+++|+ +++.|. +++|+++|.||++|+|+.+ ++|..++.||++|.|
T Consensus 89 ~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~---------~~i~~~~~ig~~~~i 159 (197)
T cd03360 89 PSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPG---------VVLSGGVTIGEGAFI 159 (197)
T ss_pred CCeEECCCCEECCCCEEcCCCEECCCCEECCCeEECCCCEECCCCEECCCCEECCC---------CEEcCCcEECCCCEE
Confidence 4445555555555555554433 334443 4444444444444444443 555555666666655
Q ss_pred e-ccEECCCceecccc
Q 016989 359 T-NSIVLPNKTLNVSV 373 (379)
Q Consensus 359 ~-~~ii~~~~~i~~~~ 373 (379)
. +|+|.+++.|++++
T Consensus 160 g~~~~v~~~~~ig~~~ 175 (197)
T cd03360 160 GAGATIIQGVTIGAGA 175 (197)
T ss_pred CCCCEEcCCCEECCCC
Confidence 3 55666666666554
No 146
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=3.7e-08 Score=87.18 Aligned_cols=66 Identities=38% Similarity=0.630 Sum_probs=57.4
Q ss_pred EEecCeEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCcee
Q 016989 291 TIIGDVYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTL 369 (379)
Q Consensus 291 ~i~~~~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i 369 (379)
.|.++|+|++++.+++++ +|+ |.-||++++||+|++|.+ |||.++|.|.+|+.+-+||||=+|.|
T Consensus 284 ~IigdVyIhPsakvhptA----kiGPNVSIga~vrvg~GvRl~~----------sIIl~d~ei~enavVl~sIigw~s~i 349 (407)
T KOG1460|consen 284 EIIGDVYIHPSAKVHPTA----KIGPNVSIGANVRVGPGVRLRE----------SIILDDAEIEENAVVLHSIIGWKSSI 349 (407)
T ss_pred eEEeeeEEcCcceeCCcc----ccCCCceecCCceecCCceeee----------eeeccCcEeeccceEEeeeecccccc
Confidence 488899999999998665 577 777888888888888877 99999999999999999999999999
Q ss_pred c
Q 016989 370 N 370 (379)
Q Consensus 370 ~ 370 (379)
|
T Consensus 350 G 350 (407)
T KOG1460|consen 350 G 350 (407)
T ss_pred c
Confidence 8
No 147
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=98.67 E-value=7.4e-08 Score=86.90 Aligned_cols=49 Identities=16% Similarity=0.238 Sum_probs=29.8
Q ss_pred CcEEe-ceEECCCCEECCCcEEeeccc---ccccccceEECCCcEECCCcEEe
Q 016989 311 NAVVT-NAIVGWKSSIGRWSRVQAEGD---FNAKLGITILGEAVGVEDEVVVT 359 (379)
Q Consensus 311 ~~~i~-~s~ig~~~~ig~~~~i~~~~~---~~~~~~~sii~~~~~i~~~~~i~ 359 (379)
++.|. ++.||++|.|++++.|+...- +.++...++||++|.|+++|.|.
T Consensus 41 ~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~~~~I~e~vtI~ 93 (255)
T PRK12461 41 HAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDRNVIREGVTIH 93 (255)
T ss_pred CCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEECCceEECCccEEe
Confidence 34444 566666666666666653100 12233358899999999999986
No 148
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=98.67 E-value=1.2e-05 Score=77.92 Aligned_cols=178 Identities=16% Similarity=0.230 Sum_probs=112.4
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCcee-CCcchhHHHHHhcCc----------EEE-EcccchHHHHHHHHhhcc
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPL-GGQPMVHHPISACKR----------IYL-VGFYEEREFALYVSSISN 74 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi-~g~pli~~~i~~l~~----------iiv-~~~~~~~~i~~~l~~~~~ 74 (379)
.++.+|.|||| .||||+- ..||.|+++ .|+++++..++++.. .++ .+...++...+|++.+.
T Consensus 78 ~k~avlkLnGG--lGTrmG~---~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k~~- 151 (469)
T PLN02474 78 DKLVVLKLNGG--LGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEKYT- 151 (469)
T ss_pred hcEEEEEecCC--cccccCC---CCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHHcC-
Confidence 46789999999 9999998 889999999 478999998888864 344 44444455788887643
Q ss_pred cCCccEEEecC------------------------CCCCChHHHHHHH-----HHhhccCCCCeEEEEcCCeee-cCChH
Q 016989 75 ELRIPVRYLRE------------------------DKPHGSAGALYNF-----RDLIMEDNPSHIFLLNCDVCC-SFPLP 124 (379)
Q Consensus 75 ~~~~~i~~~~~------------------------~~~~g~~~al~~~-----~~~i~~~~~~~~lv~~gD~i~-~~dl~ 124 (379)
.++..+.+..| ..+-|.++..... ++.+..+.-+++.+.+.|++. ..|.
T Consensus 152 ~~~~~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vDp- 230 (469)
T PLN02474 152 NSNIEIHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDL- 230 (469)
T ss_pred CCccceEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccCH-
Confidence 23334332211 1234444433321 333433445689999999965 3343
Q ss_pred HHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCCC--cEEEeeecCCC--------cccceeeeeEEEeCHhhHHHh
Q 016989 125 EMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN--ELLHYTEKPET--------FVSDLINCGVYVFTPDIFNAI 194 (379)
Q Consensus 125 ~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~--~v~~~~ekp~~--------~~~~~~~~Giy~~~~~~l~~l 194 (379)
.++..+..++++.++=+.+....+ ..-|.+... +| ++..+.+-|.. ..-.+.+++.++|+-++++.+
T Consensus 231 ~~lg~~~~~~~e~~~ev~~Kt~~d-~kgG~l~~~--dgk~~lvEysqvp~e~~~~f~~~~kf~~fNtnn~w~~L~~l~~~ 307 (469)
T PLN02474 231 KILNHLIQNKNEYCMEVTPKTLAD-VKGGTLISY--EGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRL 307 (469)
T ss_pred HHHHHHHhcCCceEEEEeecCCCC-CCccEEEEE--CCEEEEEEEecCCHHHHHhhcccccceeeeeeeEEEEHHHHHHH
Confidence 366667777888776655432211 222555543 34 46666665532 235678999999998777655
No 149
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=98.67 E-value=1.4e-07 Score=82.29 Aligned_cols=65 Identities=14% Similarity=0.166 Sum_probs=46.1
Q ss_pred CCcEEeceEECCCCEECCCcEEeeccc--c--------------------cc------cccceEECCCcEECCCcEEe-c
Q 016989 310 ENAVVTNAIVGWKSSIGRWSRVQAEGD--F--------------------NA------KLGITILGEAVGVEDEVVVT-N 360 (379)
Q Consensus 310 ~~~~i~~s~ig~~~~ig~~~~i~~~~~--~--------------------~~------~~~~sii~~~~~i~~~~~i~-~ 360 (379)
.++.+.+++||++|.|++++.|..+.- . .. ....++||++|.||.+|.|. +
T Consensus 47 ~~~~i~~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~g 126 (204)
T TIGR03308 47 RDCDIIYTTIGKFCSIAAMVRINATNHPMERPTLHHFTYRAAMYFDDASDDADFFAWRRAKRVTIGHDVWIGHGAVILPG 126 (204)
T ss_pred CCcEEeeeEECCCCEECCCCEECCCCCCCCcccccccccccccccccccccccccccccCCCeEECCCCEECCCCEECCC
Confidence 566677788999999999998875310 0 00 11358888888888888884 7
Q ss_pred cEECCCceeccccc
Q 016989 361 SIVLPNKTLNVSVH 374 (379)
Q Consensus 361 ~ii~~~~~i~~~~~ 374 (379)
+.||++++|+.++.
T Consensus 127 v~Ig~~~~I~~gs~ 140 (204)
T TIGR03308 127 VTIGNGAVIAAGAV 140 (204)
T ss_pred CEECCCCEECCCCE
Confidence 78888887777653
No 150
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=98.67 E-value=6e-08 Score=75.20 Aligned_cols=53 Identities=25% Similarity=0.310 Sum_probs=44.8
Q ss_pred CcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCceeccccc
Q 016989 311 NAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVH 374 (379)
Q Consensus 311 ~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~ 374 (379)
++.|.+|+||++|.|+ ++.|.+ |+|+++|.|++++.|.+|+|++++.|++++.
T Consensus 7 ~~~i~~s~Ig~~~~I~-~~~I~~----------svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~ 59 (104)
T cd04651 7 RGEVKNSLVSEGCIIS-GGTVEN----------SVLFRGVRVGSGSVVEDSVIMPNVGIGRNAV 59 (104)
T ss_pred CCEEEeEEECCCCEEc-CeEEEe----------CEEeCCCEECCCCEEEEeEEcCCCEECCCCE
Confidence 3466788899999998 888877 8999999999999999999998888888765
No 151
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=98.67 E-value=5.8e-08 Score=88.38 Aligned_cols=44 Identities=20% Similarity=0.276 Sum_probs=21.3
Q ss_pred CCCeEEecCeEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEeec
Q 016989 287 TKNATIIGDVYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQAE 334 (379)
Q Consensus 287 ~~~~~i~~~~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~~ 334 (379)
..++.|+++++|++++.|+++|+ |. +++||++|.||++|.|..+
T Consensus 115 ~~~~~ig~~~vI~~~v~IG~~~~----I~~~~vIg~~~~IG~~~~i~~~ 159 (338)
T COG1044 115 GKNVSIGPNVVIGAGVVIGENVV----IGAGAVIGENVKIGDGTVIHPN 159 (338)
T ss_pred CCCCccCCCeEECCCCEECCCcE----ECCCCEECCCcEECCCcEEcCC
Confidence 35555555555555555554443 32 4444444444444444443
No 152
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=98.67 E-value=5.5e-08 Score=95.82 Aligned_cols=46 Identities=20% Similarity=0.368 Sum_probs=25.7
Q ss_pred CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEEC
Q 016989 310 ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVL 364 (379)
Q Consensus 310 ~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~ 364 (379)
.++.+.+++||++|.||++++|.++ |+|+++|+|++++.+.+++|+
T Consensus 307 ~~~~i~~~~ig~~~~Ig~~~~i~~~---------~~i~~~~~Ig~~~~i~~~~ig 352 (451)
T TIGR01173 307 AYSVLEGSEIGEGCDVGPFARLRPG---------SVLGAGVHIGNFVETKNARIG 352 (451)
T ss_pred eecEEecccccCCcEECCeeEECCC---------CEECCCcEEccceeecCcEEC
Confidence 4455666777777777777777655 444444444444444333333
No 153
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=98.66 E-value=1.4e-07 Score=78.85 Aligned_cols=48 Identities=17% Similarity=0.336 Sum_probs=22.7
Q ss_pred EEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEECCCcee
Q 016989 313 VVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTL 369 (379)
Q Consensus 313 ~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~~~~~i 369 (379)
.+.+++||++|.||.++.|.++ ++|+++|.|+.++.|. ++.|++++++
T Consensus 75 ~i~~~~Ig~~~~Ig~~~~I~~g---------~~Ig~~~~Ig~~s~v~~~~~i~~~~~v 123 (155)
T cd04745 75 ILHGCTIGRNALVGMNAVVMDG---------AVIGEESIVGAMAFVKAGTVIPPRSLI 123 (155)
T ss_pred EEECCEECCCCEECCCCEEeCC---------CEECCCCEECCCCEeCCCCEeCCCCEE
Confidence 3344444444444444444444 5555555555555443 3444444443
No 154
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=98.66 E-value=1.3e-07 Score=85.76 Aligned_cols=57 Identities=14% Similarity=0.153 Sum_probs=39.5
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEE-eccEECCCceeccccc
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLNVSVH 374 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i-~~~ii~~~~~i~~~~~ 374 (379)
+++||++|.|+++|.|..+.... -..++||++|.|++++.| ++|+|++++.|+.++.
T Consensus 76 ~v~IG~~~~I~~~~~I~~~~~~~--~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~ 133 (254)
T TIGR01852 76 ELIIGDNNTIREFVTINRGTASG--GGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNAT 133 (254)
T ss_pred eEEECCCCEECCCCEECCcccCC--CCcEEECCCCEECCCCEEccCCEECCCCEECCCCE
Confidence 57888888888888887642210 013788888888777777 5777777777766553
No 155
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=98.65 E-value=1.2e-07 Score=79.62 Aligned_cols=83 Identities=17% Similarity=0.133 Sum_probs=54.7
Q ss_pred CCeEEecCeEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEECC
Q 016989 288 KNATIIGDVYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLP 365 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~~ 365 (379)
.+..|.+++.||+++.++++ .++.|+ +++||++|.|++++.|+.... ......++||++|.||.+|.|. +++||+
T Consensus 60 ~~~~I~~~~~Ig~~~~i~~~--~g~~Ig~~~~IG~~~~I~~~v~ig~~~~-~~~~~~~~Ig~~v~Ig~~a~I~~~v~IG~ 136 (162)
T TIGR01172 60 TGVDIHPGARIGRGVFIDHG--TGVVIGETAVIGDDVTIYHGVTLGGTGK-EKGKRHPTVGEGVMIGAGAKVLGNIEVGE 136 (162)
T ss_pred eCeEeCCCCEECCCeEECCC--CeEEECCCCEECCCCEEcCCCEECCCcc-ccCCcCCEECCCcEEcCCCEEECCcEECC
Confidence 34666667777777777654 235666 688888888888888875321 1112336788888888888774 566666
Q ss_pred Cceecccc
Q 016989 366 NKTLNVSV 373 (379)
Q Consensus 366 ~~~i~~~~ 373 (379)
++.|++++
T Consensus 137 ~~~Iga~s 144 (162)
T TIGR01172 137 NAKIGANS 144 (162)
T ss_pred CCEECCCC
Confidence 66666654
No 156
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=98.65 E-value=1.3e-07 Score=77.50 Aligned_cols=10 Identities=20% Similarity=0.112 Sum_probs=3.9
Q ss_pred ceEECCCCEE
Q 016989 316 NAIVGWKSSI 325 (379)
Q Consensus 316 ~s~ig~~~~i 325 (379)
++.|+++|.|
T Consensus 55 ~~~I~~~~~i 64 (139)
T cd03350 55 NVHLSAGAVI 64 (139)
T ss_pred CCEECCCCEE
Confidence 3444433333
No 157
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.64 E-value=2.5e-07 Score=67.39 Aligned_cols=72 Identities=24% Similarity=0.380 Sum_probs=52.1
Q ss_pred EECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEECCCceecccc
Q 016989 297 YVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTLNVSV 373 (379)
Q Consensus 297 ~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~~~~~i~~~~ 373 (379)
.|++++.|++++ .|. +++||++|.|++++.|.+..... ...+..|+++|.|+.++.+. ++.|++++.|++++
T Consensus 2 ~ig~~~~i~~~~----~i~~~~~Ig~~~~I~~~~~i~~~~~~~-~~~~~~ig~~~~v~~~~~i~~~~~ig~~~~i~~~s 75 (78)
T cd00208 2 FIGEGVKIHPKA----VIRGPVVIGDNVNIGPGAVIGAATGPN-EKNPTIIGDNVEIGANAVIHGGVKIGDNAVIGAGA 75 (78)
T ss_pred EECCCeEECCCC----EEeCcEEECCCCEECCCCEEEeccCCC-ccCCcEECCCcEECCCCEEeCCCEECCCCEECcCc
Confidence 455666666443 355 58899999999999998742110 12338899999999999884 78999999998765
No 158
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=98.63 E-value=1.4e-07 Score=84.28 Aligned_cols=18 Identities=22% Similarity=0.217 Sum_probs=9.1
Q ss_pred eEECCCCEECCCcEEeec
Q 016989 317 AIVGWKSSIGRWSRVQAE 334 (379)
Q Consensus 317 s~ig~~~~ig~~~~i~~~ 334 (379)
++||++|.||++|.|.++
T Consensus 174 ViIgDnv~IGa~a~I~~G 191 (269)
T TIGR00965 174 TIIEDNCFIGARSEIVEG 191 (269)
T ss_pred eEECCCCEECCCCEEcCC
Confidence 455555555555555444
No 159
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=98.62 E-value=1.5e-07 Score=81.18 Aligned_cols=69 Identities=16% Similarity=0.208 Sum_probs=46.7
Q ss_pred CeEECCCcEECCCCC-CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEECCCceeccc
Q 016989 295 DVYVHPSAKIHPTAK-ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTLNVS 372 (379)
Q Consensus 295 ~~~i~~~~~i~~~~~-~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~~~~~i~~~ 372 (379)
++.||+++.|+++|+ ..+...+|+||++|.||+++.|.+ |+|+++|.||.++.|. +++|++++.|+.+
T Consensus 47 ~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~----------siIg~~~~IG~ga~I~~g~~IG~~s~Vgag 116 (192)
T TIGR02287 47 RIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHG----------CIVGRNALVGMNAVVMDGAVIGENSIVAAS 116 (192)
T ss_pred ceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcC----------CEECCCCEECCCcccCCCeEECCCCEEcCC
Confidence 345566666665543 111124688888888888888877 8888888888877774 5677777776665
Q ss_pred c
Q 016989 373 V 373 (379)
Q Consensus 373 ~ 373 (379)
+
T Consensus 117 s 117 (192)
T TIGR02287 117 A 117 (192)
T ss_pred C
Confidence 4
No 160
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=98.61 E-value=1.4e-07 Score=89.38 Aligned_cols=50 Identities=10% Similarity=0.149 Sum_probs=30.0
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe--------------------ccEECCCceeccccc
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT--------------------NSIVLPNKTLNVSVH 374 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~--------------------~~ii~~~~~i~~~~~ 374 (379)
++.||++|.|++++.|.++ +.||++|.|+++|.|. +++|++++.||+++.
T Consensus 148 ~~~IG~~~~I~~~~~I~~~---------~~Ig~~~~I~~~~~Ig~~~f~~~~~~~~~~~~~~~g~v~Ig~~v~IGa~~~ 217 (343)
T PRK00892 148 GVKIGADCRLHANVTIYHA---------VRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVIIGDDVEIGANTT 217 (343)
T ss_pred CcEECCCCEeCCCeEEcCC---------CEECCCCEECCCCEEeccCcCcccCCCceeeccccccEEECCCcEECCCcE
Confidence 4444444444444444443 5577777777777773 467777777777653
No 161
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.61 E-value=1.1e-07 Score=94.27 Aligned_cols=68 Identities=19% Similarity=0.220 Sum_probs=42.9
Q ss_pred EecCeEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCceec
Q 016989 292 IIGDVYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLN 370 (379)
Q Consensus 292 i~~~~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~ 370 (379)
+.+++.||+++.|+++| .|. +++||++|.|+++|.|++ |+||++|.|+++++|.+++||+++.|+
T Consensus 267 i~~~~~Ig~~~~I~~~~----~I~~~v~Ig~~~~I~~~~~i~~----------svI~~~~~I~~~~~i~~~~ig~~~~ig 332 (481)
T PRK14358 267 IEDTVTLGRDVTIEPGV----LLRGQTRVADGVTIGAYSVVTD----------SVLHEGAVIKPHSVLEGAEVGAGSDVG 332 (481)
T ss_pred ccCCcEECCCCEEeCCc----EEeCCcEECCCCEECCCCEEee----------eEECCCCEEeecceecCCeEeCceEEC
Confidence 35566666666666544 344 556666666666666655 666677666666666666666666666
Q ss_pred ccc
Q 016989 371 VSV 373 (379)
Q Consensus 371 ~~~ 373 (379)
+++
T Consensus 333 ~~~ 335 (481)
T PRK14358 333 PFA 335 (481)
T ss_pred Ccc
Confidence 654
No 162
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=98.61 E-value=1.7e-07 Score=84.47 Aligned_cols=83 Identities=12% Similarity=0.054 Sum_probs=50.8
Q ss_pred CCeEEecCeEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEE-eccEECC
Q 016989 288 KNATIIGDVYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLP 365 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i-~~~ii~~ 365 (379)
.++.|++.+.||+++.+++++ +.+|+ +++||++|.|..++.|++... ......++||++|.||.||.| .++.||+
T Consensus 140 ~gidI~~~a~IG~g~~I~h~~--givIG~~a~IGdnv~I~~~VtiGg~~~-~~~~~~p~IGd~V~IGaga~Ilggv~IG~ 216 (273)
T PRK11132 140 FQVDIHPAAKIGRGIMLDHAT--GIVIGETAVIENDVSILQSVTLGGTGK-TSGDRHPKIREGVMIGAGAKILGNIEVGR 216 (273)
T ss_pred eeeEecCcceECCCeEEcCCC--CeEECCCCEECCCCEEcCCcEEecCcc-cCCCcCCEECCCcEEcCCCEEcCCCEECC
Confidence 566777777788888777653 34666 677777777777777765211 111123566666666666666 3555555
Q ss_pred Cceecccc
Q 016989 366 NKTLNVSV 373 (379)
Q Consensus 366 ~~~i~~~~ 373 (379)
+++||.++
T Consensus 217 ~a~IGAgS 224 (273)
T PRK11132 217 GAKIGAGS 224 (273)
T ss_pred CCEECCCC
Confidence 55555543
No 163
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.61 E-value=9.8e-08 Score=94.18 Aligned_cols=64 Identities=13% Similarity=0.183 Sum_probs=35.8
Q ss_pred CCcEEeceEECCCCEECCCcEEeeccc--------ccccccceEECCCcEECCCcEEeccEECCCceecccc
Q 016989 310 ENAVVTNAIVGWKSSIGRWSRVQAEGD--------FNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSV 373 (379)
Q Consensus 310 ~~~~i~~s~ig~~~~ig~~~~i~~~~~--------~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~ 373 (379)
++|.|.+++||++|.||++++|.++.+ ..+++++|+|++++.+++++.+.+|+||+++.|+.++
T Consensus 315 ~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~ig~~~ig~~~~Ig~~~ 386 (456)
T PRK14356 315 SFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKKAVLGKGAKANHLTYLGDAEIGAGANIGAGT 386 (456)
T ss_pred eeEEEcccceecccEECCceEECCCCEECCCCEecCCceeeeeEecCCcEecccccccCeEECCCCEECCCc
Confidence 445566777777777777777765411 1233344555555555555555555555555555553
No 164
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=98.60 E-value=2.1e-07 Score=83.97 Aligned_cols=84 Identities=13% Similarity=0.093 Sum_probs=54.7
Q ss_pred CCeEEecCeEECCCcEECCCCC---------CCcE---Ee-ceEECCCCEECCCcEEeecccccccccceEECCCcEECC
Q 016989 288 KNATIIGDVYVHPSAKIHPTAK---------ENAV---VT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVED 354 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~---------~~~~---i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~ 354 (379)
.+++|..++.+|+|+.|+++++ ..++ |. .++||++|.||.+|+|.. ......-..+.||++|.||.
T Consensus 183 ~sa~Vr~gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds~IG~gasIg~-tLsGg~~~~V~IGe~~lIGa 261 (341)
T TIGR03536 183 DTARVRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGCSTMG-TLSGGGNIVISVGEGCLLGA 261 (341)
T ss_pred CCCeEcCCcEECCCCEEecCCEECcCcEecCCceEecccccCCEECCCCEECCCCEEeE-EEeCCCceeEEECCCcEECC
Confidence 4444445555555555555443 2223 44 888999999999999933 33333233388888899999
Q ss_pred CcEEeccEECCCceecccc
Q 016989 355 EVVVTNSIVLPNKTLNVSV 373 (379)
Q Consensus 355 ~~~i~~~ii~~~~~i~~~~ 373 (379)
||.| +..||++|+||.+.
T Consensus 262 gA~I-GI~IGd~~iIGAGa 279 (341)
T TIGR03536 262 NAGI-GIPLGDRCTVEAGL 279 (341)
T ss_pred CCEE-eeEECCCCEECCCC
Confidence 8888 77777777777665
No 165
>PLN02694 serine O-acetyltransferase
Probab=98.59 E-value=1.9e-07 Score=84.23 Aligned_cols=82 Identities=12% Similarity=0.112 Sum_probs=49.3
Q ss_pred CeEEecCeEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEE-eccEECCC
Q 016989 289 NATIIGDVYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLPN 366 (379)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i-~~~ii~~~ 366 (379)
+..|++.+.||+++.|.+++ +++|+ +++||++|.|..++.+++.. ..+..++++||++|.||.||.| .++.||++
T Consensus 160 gvdI~p~A~IG~gv~Idh~t--GVVIGe~a~IGdnv~I~~~VtLGg~g-~~~~~r~piIGd~V~IGagA~Ilggi~IGd~ 236 (294)
T PLN02694 160 AVDIHPAAKIGKGILFDHAT--GVVIGETAVIGNNVSILHHVTLGGTG-KACGDRHPKIGDGVLIGAGATILGNVKIGEG 236 (294)
T ss_pred eEEeCCcceecCCEEEeCCC--CeEECCCcEECCCCEEeecceeCCcc-cccCCCccEECCCeEECCeeEECCCCEECCC
Confidence 44566666666666666542 34555 56666666666666665421 1222345777777777777777 46666666
Q ss_pred ceecccc
Q 016989 367 KTLNVSV 373 (379)
Q Consensus 367 ~~i~~~~ 373 (379)
++|+.++
T Consensus 237 a~IGAgS 243 (294)
T PLN02694 237 AKIGAGS 243 (294)
T ss_pred CEECCCC
Confidence 6666554
No 166
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=98.59 E-value=2.2e-07 Score=83.80 Aligned_cols=52 Identities=15% Similarity=0.056 Sum_probs=24.6
Q ss_pred eEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEE-eccEECCCceecc
Q 016989 317 AIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLNV 371 (379)
Q Consensus 317 s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i-~~~ii~~~~~i~~ 371 (379)
..||++|.|++++.|..+.... ..+.||++|.+..+++| ++|+||+++.|+.
T Consensus 78 v~IG~~~~I~e~vtI~~gt~~g---~~t~IG~~~~i~~~~~I~hd~~IG~~v~i~~ 130 (255)
T PRK12461 78 LEIGDRNVIREGVTIHRGTKGG---GVTRIGNDNLLMAYSHVAHDCQIGNNVILVN 130 (255)
T ss_pred eEECCceEECCccEEecCcccC---CcEEEcccceeccCcEECCCCEECCCcEECC
Confidence 5566777777777666542100 11444444444444444 2444444444443
No 167
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=98.58 E-value=2.3e-07 Score=82.03 Aligned_cols=112 Identities=21% Similarity=0.274 Sum_probs=76.8
Q ss_pred EEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEcccchHHHHHHHHhhcccCCccEEEe
Q 016989 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (379)
Q Consensus 10 ~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~ 83 (379)
.|||+|.| ||.--| -|.|.+++|+|||+|+++.+.+ |+|.+...+ +.+.+.. +|..+...
T Consensus 1 iaiIpAR~---gS~rlp-----~Knl~~l~gkpLi~~~i~~a~~s~~~d~IvVaTd~~~--i~~~~~~----~g~~v~~~ 66 (217)
T PF02348_consen 1 IAIIPARG---GSKRLP-----GKNLKPLGGKPLIEYVIERAKQSKLIDEIVVATDDEE--IDDIAEE----YGAKVIFR 66 (217)
T ss_dssp EEEEEE-S---SSSSST-----TGGGSEETTEEHHHHHHHHHHHTTTTSEEEEEESSHH--HHHHHHH----TTSEEEE-
T ss_pred CEEEecCC---CCCCCC-----cchhhHhCCccHHHHHHHHHHhCCCCCeEEEeCCCHH--HHHHHHH----cCCeeEEc
Confidence 38999988 555556 6999999999999999999986 777666433 5555543 45667665
Q ss_pred cCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHHHhcCCc
Q 016989 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGM 136 (379)
Q Consensus 84 ~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~~~~~~~ 136 (379)
+.....++. ....+......+..+.++.+.||.|+ +..+..+++.+.+..++
T Consensus 67 ~~~~~~~~~-r~~~~~~~~~~~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~ 120 (217)
T PF02348_consen 67 RGSLADDTD-RFIEAIKHFLADDEDIVVRLQGDSPLLDPTSIDRAIEDIREANED 120 (217)
T ss_dssp -TTSSSHHH-HHHHHHHHHTCSTTSEEEEESTTETT--HHHHHHHHHHHHHSTTS
T ss_pred ChhhcCCcc-cHHHHHHHhhhhHHhhccccCCeeeECCHHHHHHHHHHHhcCchh
Confidence 544444444 34444443332233479999999999 56789999988887765
No 168
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.58 E-value=4.5e-07 Score=69.91 Aligned_cols=83 Identities=14% Similarity=0.144 Sum_probs=52.6
Q ss_pred CeEEecCeEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEECCC
Q 016989 289 NATIIGDVYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPN 366 (379)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~~~ 366 (379)
+..|++++.|+++++++++. .+.|+ ++.||++|.|+.++.|.+.... .....++|+++|.|+.++.+. ++.|+++
T Consensus 2 ~~~i~~~~~ig~~~~i~~~~--~~~ig~~~~Ig~~~~i~~~~~i~~~~~~-~~~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~ 78 (101)
T cd03354 2 GIDIHPGAKIGPGLFIDHGT--GIVIGETAVIGDNCTIYQGVTLGGKGKG-GGKRHPTIGDNVVIGAGAKILGNITIGDN 78 (101)
T ss_pred ceEeCCCCEECCCEEECCCC--eEEECCCCEECCCCEEcCCCEECCCccC-CcCCCCEECCCcEEcCCCEEECcCEECCC
Confidence 34566777777777776542 23455 4666666666666666554110 123447888888888888885 4777777
Q ss_pred ceeccccc
Q 016989 367 KTLNVSVH 374 (379)
Q Consensus 367 ~~i~~~~~ 374 (379)
+.|++++.
T Consensus 79 ~~i~~~~~ 86 (101)
T cd03354 79 VKIGANAV 86 (101)
T ss_pred CEECCCCE
Confidence 77777653
No 169
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.57 E-value=1.5e-07 Score=92.89 Aligned_cols=75 Identities=17% Similarity=0.227 Sum_probs=45.0
Q ss_pred CeEEecCeEECCCcEECCCCC--CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEECC
Q 016989 289 NATIIGDVYVHPSAKIHPTAK--ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLP 365 (379)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~--~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~~ 365 (379)
++.|++++.|+.++.|+++|. ++|.|.+|+||++|.|+++|.|.+ |+|+++|+|++++.|. ++.|++
T Consensus 271 ~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~----------~~ig~~~~Ig~~~~i~~~~~i~~ 340 (456)
T PRK09451 271 DVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVED----------ANLGAACTIGPFARLRPGAELAE 340 (456)
T ss_pred CCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeC----------CccCCCcEecCceEEeCCCEECC
Confidence 344445555555555555555 666666777777777777776655 6666666666666664 555555
Q ss_pred Cceecccc
Q 016989 366 NKTLNVSV 373 (379)
Q Consensus 366 ~~~i~~~~ 373 (379)
++.||+++
T Consensus 341 ~~~ig~~~ 348 (456)
T PRK09451 341 GAHVGNFV 348 (456)
T ss_pred Cceeccce
Confidence 55555543
No 170
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=98.57 E-value=4.2e-07 Score=75.79 Aligned_cols=25 Identities=20% Similarity=0.197 Sum_probs=11.2
Q ss_pred eEECCCcEECCCcEEe-ccEECCCce
Q 016989 344 TILGEAVGVEDEVVVT-NSIVLPNKT 368 (379)
Q Consensus 344 sii~~~~~i~~~~~i~-~~ii~~~~~ 368 (379)
++|++++.|+.++.+. +..+++++.
T Consensus 97 ~~Ig~~~~vg~~~~v~~g~~i~~~~v 122 (154)
T cd04650 97 AKIGDHVIIGAGAVVTPGKEIPDYSL 122 (154)
T ss_pred CEECCCCEECCCCEECCCcEeCCCCE
Confidence 4445555554444443 234444444
No 171
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.56 E-value=3.4e-07 Score=80.26 Aligned_cols=31 Identities=13% Similarity=0.297 Sum_probs=20.3
Q ss_pred ceEECCCcEECCCcEEec-----cEECCCceecccc
Q 016989 343 ITILGEAVGVEDEVVVTN-----SIVLPNKTLNVSV 373 (379)
Q Consensus 343 ~sii~~~~~i~~~~~i~~-----~ii~~~~~i~~~~ 373 (379)
.++|++++.|+.++.+.. +.|++++.|++++
T Consensus 92 ~v~Ig~~~~Ig~~~~i~~~~~~~~~Ig~~~~i~~~v 127 (205)
T cd03352 92 GVIIGDDVEIGANTTIDRGALGDTVIGDGTKIDNLV 127 (205)
T ss_pred eEEECCCEEECCCCEEeccccCCeEECCCCEECCce
Confidence 477888888888887763 4555555555543
No 172
>PLN02296 carbonate dehydratase
Probab=98.56 E-value=3e-07 Score=83.26 Aligned_cols=48 Identities=13% Similarity=0.143 Sum_probs=29.7
Q ss_pred eceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEECCCceeccc
Q 016989 315 TNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTLNVS 372 (379)
Q Consensus 315 ~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~~~~~i~~~ 372 (379)
.+++||++|.||++|.|.+ |+|+++|.||.+|.|. ++.|++++.|+.+
T Consensus 118 ~~siIG~~v~IG~~avI~g----------~~Igd~v~IG~ga~I~~gv~Ig~~a~Igag 166 (269)
T PLN02296 118 LPTIIGDNVTIGHSAVLHG----------CTVEDEAFVGMGATLLDGVVVEKHAMVAAG 166 (269)
T ss_pred CCcEeCCCCEECCCceecC----------CEECCCcEECCCcEECCCeEECCCCEECCC
Confidence 3678888888888887765 6666666666555552 4444444444443
No 173
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=98.55 E-value=3.1e-07 Score=73.05 Aligned_cols=38 Identities=26% Similarity=0.263 Sum_probs=20.2
Q ss_pred eceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEecc
Q 016989 315 TNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNS 361 (379)
Q Consensus 315 ~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ 361 (379)
.+++||++|.||+++.+.++ ++|++++.|+.++.+..+
T Consensus 66 ~~~~Ig~~~~Ig~~~~v~~~---------~~ig~~~~i~~~~~v~~~ 103 (119)
T cd03358 66 KGTTVKRGASIGANATILPG---------VTIGEYALVGAGAVVTKD 103 (119)
T ss_pred CCcEECCCcEECcCCEEeCC---------cEECCCCEEccCCEEeCc
Confidence 34555555555555555444 555555555555555443
No 174
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=98.55 E-value=4.4e-07 Score=79.05 Aligned_cols=15 Identities=7% Similarity=0.025 Sum_probs=5.5
Q ss_pred EEecCeEECCCcEEC
Q 016989 291 TIIGDVYVHPSAKIH 305 (379)
Q Consensus 291 ~i~~~~~i~~~~~i~ 305 (379)
.+.+++.||+++.|+
T Consensus 95 ~i~~~~~ig~~~~i~ 109 (201)
T TIGR03570 95 IVSPSASIGEGTVIM 109 (201)
T ss_pred EECCCCEECCCCEEC
Confidence 333333333333333
No 175
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=98.55 E-value=4.2e-07 Score=76.91 Aligned_cols=34 Identities=12% Similarity=0.173 Sum_probs=20.6
Q ss_pred ccccceEECCCcEECCCcEEeccEECCCceeccc
Q 016989 339 AKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVS 372 (379)
Q Consensus 339 ~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~ 372 (379)
+.+.++.||++|.||.++.|.++.|++++.|+++
T Consensus 95 ~~I~~~~Ig~~~~Ig~~s~i~~~~i~~~~~v~~~ 128 (167)
T cd00710 95 SVVFNAKVGDNCVIGHNAVVDGVEIPPGRYVPAG 128 (167)
T ss_pred CEEECCEECCCCEEcCCCEEeCCEeCCCCEECCC
Confidence 3344466666666666666666666666666554
No 176
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=98.54 E-value=4.6e-07 Score=78.35 Aligned_cols=67 Identities=16% Similarity=0.226 Sum_probs=44.0
Q ss_pred EECCCcEECCCCC-CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEECCCceecccc
Q 016989 297 YVHPSAKIHPTAK-ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTLNVSV 373 (379)
Q Consensus 297 ~i~~~~~i~~~~~-~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~~~~~i~~~~ 373 (379)
.|++++.|+++|+ ......+++|+++|.||+++.+.+ ++|+++|.||.++.|. +++|++++.|+.++
T Consensus 51 ~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g----------~vIG~~v~IG~ga~V~~g~~IG~~s~Vgags 119 (196)
T PRK13627 51 IVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHG----------CVIGRDALVGMNSVIMDGAVIGEESIVAAMS 119 (196)
T ss_pred EECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEee----------EEECCCCEECcCCccCCCcEECCCCEEcCCC
Confidence 3444555554443 111112578888888888888876 8888888888888773 56677777766655
No 177
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.53 E-value=2.6e-07 Score=89.01 Aligned_cols=62 Identities=19% Similarity=0.377 Sum_probs=53.1
Q ss_pred EECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEec-----cEECCCceecc
Q 016989 297 YVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTN-----SIVLPNKTLNV 371 (379)
Q Consensus 297 ~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~-----~ii~~~~~i~~ 371 (379)
+|+++++|+ ++|.|.+|+|+++|.||++|+|.+ |+|+++|.|++++.+.+ .+||+++.|++
T Consensus 310 ~ig~~~~I~----~~~~i~~svi~~~~~i~~~~~i~~----------~ii~~~~~i~~~~~i~~~~~~~~~ig~~~~~~~ 375 (380)
T PRK05293 310 VLFQGVQVG----EGSVVKDSVIMPGAKIGENVVIER----------AIIGENAVIGDGVIIGGGKEVITVIGENEVIGV 375 (380)
T ss_pred EEcCCCEEC----CCCEEECCEEeCCCEECCCeEEeE----------EEECCCCEECCCCEEcCCCceeEEEeCCCCCCC
Confidence 444444444 556799999999999999999988 99999999999999976 89999999988
Q ss_pred c
Q 016989 372 S 372 (379)
Q Consensus 372 ~ 372 (379)
+
T Consensus 376 ~ 376 (380)
T PRK05293 376 G 376 (380)
T ss_pred C
Confidence 7
No 178
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.52 E-value=3e-07 Score=90.51 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=13.5
Q ss_pred CCcEEe-ceEECCCCEECCCcEEee
Q 016989 310 ENAVVT-NAIVGWKSSIGRWSRVQA 333 (379)
Q Consensus 310 ~~~~i~-~s~ig~~~~ig~~~~i~~ 333 (379)
+++.|. +|+||++|.||++|.|.+
T Consensus 314 ~~~~i~~~~~ig~~~~Ig~~~~i~~ 338 (446)
T PRK14353 314 PYARLRPGAELGEGAKVGNFVEVKN 338 (446)
T ss_pred CCeEEeccceecCCeEEcCceEEec
Confidence 334444 566666666666665543
No 179
>PLN02357 serine acetyltransferase
Probab=98.50 E-value=4.8e-07 Score=83.99 Aligned_cols=81 Identities=14% Similarity=0.126 Sum_probs=45.5
Q ss_pred eEEecCeEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEE-eccEECCCc
Q 016989 290 ATIIGDVYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLPNK 367 (379)
Q Consensus 290 ~~i~~~~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i-~~~ii~~~~ 367 (379)
..|++++.||+|+.+.++. +++|+ +++||++|.|+.++.|++.... ....+++||++|.||.||.| .+..||+++
T Consensus 227 vdI~p~a~IG~Gv~Idh~~--giVIGe~avIGdnV~I~~gVtIGg~g~~-~g~~~piIGd~V~IGagA~IlggV~IGdga 303 (360)
T PLN02357 227 VDIHPGAKIGQGILLDHAT--GVVIGETAVVGNNVSILHNVTLGGTGKQ-SGDRHPKIGDGVLIGAGTCILGNITIGEGA 303 (360)
T ss_pred eeeCCCCEECCCeEECCCC--ceEECCCCEECCCCEEeCCceecCcccc-CCccCceeCCCeEECCceEEECCeEECCCC
Confidence 4455555566666555431 23455 5666666666666666542111 11234677777777777666 356666666
Q ss_pred eecccc
Q 016989 368 TLNVSV 373 (379)
Q Consensus 368 ~i~~~~ 373 (379)
+||.++
T Consensus 304 ~IGAgS 309 (360)
T PLN02357 304 KIGAGS 309 (360)
T ss_pred EECCCC
Confidence 666654
No 180
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=98.49 E-value=9.7e-07 Score=73.60 Aligned_cols=49 Identities=18% Similarity=0.300 Sum_probs=23.9
Q ss_pred cEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEECCCcee
Q 016989 312 AVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTL 369 (379)
Q Consensus 312 ~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~~~~~i 369 (379)
+.+.+++||++|.|++++.|..+ ++|+++|.|+.++.|. +..+++++.+
T Consensus 73 ~~i~~~~Ig~~~~Ig~~~~v~~~---------~~ig~~~~ig~~~~v~~~~~i~~~~~~ 122 (153)
T cd04645 73 AVLHGCTIGDNCLIGMGAIILDG---------AVIGKGSIVAAGSLVPPGKVIPPGSLV 122 (153)
T ss_pred cEEeeeEECCCCEECCCCEEcCC---------CEECCCCEECCCCEECCCCEeCCCCEE
Confidence 33444455555555555555433 5555555555555552 3344444444
No 181
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.49 E-value=4.6e-07 Score=89.97 Aligned_cols=87 Identities=13% Similarity=0.192 Sum_probs=49.9
Q ss_pred CCCeEEecCeEECCCcEECCCCC-------CCcE-----EeceEECCCCEECCCcEEeeccc--------ccccccceEE
Q 016989 287 TKNATIIGDVYVHPSAKIHPTAK-------ENAV-----VTNAIVGWKSSIGRWSRVQAEGD--------FNAKLGITIL 346 (379)
Q Consensus 287 ~~~~~i~~~~~i~~~~~i~~~~~-------~~~~-----i~~s~ig~~~~ig~~~~i~~~~~--------~~~~~~~sii 346 (379)
.+++.|.++++||+++.|+++|+ +++. +.+++|+++|.||+++.+..+.+ ..+++++|+|
T Consensus 281 ~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~~~I 360 (482)
T PRK14352 281 HPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVRTHGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETKNATI 360 (482)
T ss_pred eCCcEEeecCEECCCCEECCCCEEecCEECCCCEEeeeeeecCEEcCCCEECCCeEecCCcEEcCCCEECCcEEEcccEE
Confidence 45666666677777777776655 2222 23566667777776666654432 1123344566
Q ss_pred CCCcEECCCcEEeccEECCCceecccc
Q 016989 347 GEAVGVEDEVVVTNSIVLPNKTLNVSV 373 (379)
Q Consensus 347 ~~~~~i~~~~~i~~~ii~~~~~i~~~~ 373 (379)
+++++|++++.+.+|+||+++.||.++
T Consensus 361 ~~~~~i~~~~~i~~~~Ig~~~~IG~~~ 387 (482)
T PRK14352 361 GRGTKVPHLTYVGDADIGEHSNIGASS 387 (482)
T ss_pred CCCcEEccCceecccEECCCcEECCCc
Confidence 666666655555556666666666553
No 182
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.49 E-value=9.3e-07 Score=74.32 Aligned_cols=18 Identities=28% Similarity=0.119 Sum_probs=10.5
Q ss_pred ceEECCCCEECCCcEEee
Q 016989 316 NAIVGWKSSIGRWSRVQA 333 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~ 333 (379)
+++||++|.|++++.+.+
T Consensus 72 ~v~Ig~~~~Ig~~~~i~~ 89 (161)
T cd03359 72 PLHIGDYVFIGENCVVNA 89 (161)
T ss_pred CeEECCccEECCCCEEEe
Confidence 345666666666666554
No 183
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.46 E-value=6.5e-07 Score=75.27 Aligned_cols=16 Identities=6% Similarity=0.104 Sum_probs=7.9
Q ss_pred eEECCCCEECCCcEEe
Q 016989 317 AIVGWKSSIGRWSRVQ 332 (379)
Q Consensus 317 s~ig~~~~ig~~~~i~ 332 (379)
+.||++|.|+++|.|.
T Consensus 43 v~IG~~~~I~~~~~I~ 58 (161)
T cd03359 43 VSIGRYCILSEGCVIR 58 (161)
T ss_pred eEECCCcEECCCCEEe
Confidence 3455555555555444
No 184
>PRK10191 putative acyl transferase; Provisional
Probab=98.45 E-value=9.1e-07 Score=72.59 Aligned_cols=75 Identities=16% Similarity=0.217 Sum_probs=33.6
Q ss_pred cCeEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEECCCceecc
Q 016989 294 GDVYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTLNV 371 (379)
Q Consensus 294 ~~~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~~~~~i~~ 371 (379)
+.+.+|+++.+++++ ++.|+ ++.||++|.|++++.|++.... ....++||++|.||.+|.+. ++.||+++.|+.
T Consensus 46 ~~a~Ig~~~~I~~g~--~i~I~~~~~IGd~~~I~h~v~IG~~~~~--~~~~~~IGd~~~Ig~~~~I~~~v~IG~~~~Iga 121 (146)
T PRK10191 46 AAATIGRRFTIHHGY--AVVINKNVVAGDDFTIRHGVTIGNRGAD--NMACPHIGNGVELGANVIILGDITIGNNVTVGA 121 (146)
T ss_pred CCCEECCCeEECCCC--eEEECCCcEECCCCEECCCCEECCCCcC--CCCCCEECCCcEEcCCCEEeCCCEECCCCEECC
Confidence 333444444444431 23444 5555666666666655532110 00113555555555555553 344444444444
Q ss_pred c
Q 016989 372 S 372 (379)
Q Consensus 372 ~ 372 (379)
+
T Consensus 122 g 122 (146)
T PRK10191 122 G 122 (146)
T ss_pred C
Confidence 3
No 185
>PLN02739 serine acetyltransferase
Probab=98.45 E-value=5.1e-07 Score=83.12 Aligned_cols=80 Identities=13% Similarity=0.084 Sum_probs=37.2
Q ss_pred eEEecCeEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEE-eccEECCCc
Q 016989 290 ATIIGDVYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLPNK 367 (379)
Q Consensus 290 ~~i~~~~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i-~~~ii~~~~ 367 (379)
..|.+.+.||+++.|.+++ +++|+ +++||++|.|..++.|++..... .-...+||++|.||.||.| .++.||+++
T Consensus 206 idI~p~A~IG~Gv~IdHg~--GVVIG~~avIGdnv~I~~gVTIGg~g~~~-g~r~p~IGd~V~IGagA~IlG~V~IGd~a 282 (355)
T PLN02739 206 IDIHPAARIGKGILLDHGT--GVVIGETAVIGDRVSILHGVTLGGTGKET-GDRHPKIGDGALLGACVTILGNISIGAGA 282 (355)
T ss_pred cccCCCccccCceEEecCC--ceEECCCCEECCCCEEcCCceeCCcCCcC-CCCCcEECCCCEEcCCCEEeCCeEECCCC
Confidence 3444445555555554431 23444 55566666666666554321100 0012455555555555555 244444444
Q ss_pred eeccc
Q 016989 368 TLNVS 372 (379)
Q Consensus 368 ~i~~~ 372 (379)
+||.+
T Consensus 283 iIGAG 287 (355)
T PLN02739 283 MVAAG 287 (355)
T ss_pred EECCC
Confidence 44443
No 186
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.41 E-value=8e-07 Score=87.80 Aligned_cols=17 Identities=18% Similarity=0.448 Sum_probs=8.2
Q ss_pred eEECCCCEECCCcEEee
Q 016989 317 AIVGWKSSIGRWSRVQA 333 (379)
Q Consensus 317 s~ig~~~~ig~~~~i~~ 333 (379)
|+||++|.||++|.|..
T Consensus 317 ~~ig~~~~Ig~~~~i~~ 333 (458)
T PRK14354 317 SKVGDNVTVGPFAHLRP 333 (458)
T ss_pred CEECCCcEECCceEecC
Confidence 44445555555554443
No 187
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=98.40 E-value=8.6e-07 Score=77.33 Aligned_cols=58 Identities=14% Similarity=0.123 Sum_probs=33.8
Q ss_pred CCCeEEecCeEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe
Q 016989 287 TKNATIIGDVYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT 359 (379)
Q Consensus 287 ~~~~~i~~~~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~ 359 (379)
++++.+. ++.||++++|+++| .|.+++||++|.|++++.|.+ ++||++|.|++++.|.
T Consensus 12 ~~~a~i~-~~~IG~~~~Ig~~a----~I~~s~IG~~s~I~~~~~i~~----------~~IG~~~~I~~~v~I~ 69 (204)
T TIGR03308 12 HPTAELT-ESKLGRYTEIGERT----RLREVALGDYSYVMRDCDIIY----------TTIGKFCSIAAMVRIN 69 (204)
T ss_pred CCCcEEe-ccEeCCCcEECCCc----EEeCCEECCCCEECCCcEEee----------eEECCCCEECCCCEEC
Confidence 3445553 35555555555433 455666666666666666655 6666666666666654
No 188
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.40 E-value=2e-06 Score=67.15 Aligned_cols=57 Identities=12% Similarity=0.157 Sum_probs=27.5
Q ss_pred ceEECCCCEECCCcEEeeccc---c-------cccccceEECCCcEECCCcEE-eccEECCCceeccc
Q 016989 316 NAIVGWKSSIGRWSRVQAEGD---F-------NAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLNVS 372 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~---~-------~~~~~~sii~~~~~i~~~~~i-~~~ii~~~~~i~~~ 372 (379)
++.||++|.|+++|.|.++.. . ......++||++|.|+.++.+ .+++|++++.|+.+
T Consensus 21 ~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~ig~~~~i~~~ 88 (109)
T cd04647 21 GITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPGVTIGDGAVVGAG 88 (109)
T ss_pred ceEECCCCEECCCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEcCCCEECCCCEECCC
Confidence 355555555555555544310 0 112233555555555555555 35555555555444
No 189
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.39 E-value=1.6e-06 Score=73.06 Aligned_cols=52 Identities=12% Similarity=0.083 Sum_probs=33.3
Q ss_pred CcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEECCCceecc
Q 016989 311 NAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTLNV 371 (379)
Q Consensus 311 ~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~~~~~i~~ 371 (379)
++.+.+++||++|.||++|.|.++ +.|+++|.||.++.|. +..|.+++++..
T Consensus 78 ~~~i~~~~IGd~~~Ig~~a~I~~g---------v~Ig~~~~IgagsvV~~~~~i~~~~vi~g 130 (164)
T cd04646 78 GCKCEALKIGNNNVFESKSFVGKN---------VIITDGCIIGAGCKLPSSEILPENTVIYG 130 (164)
T ss_pred CcEEEeeEECCCCEEeCCCEECCC---------CEECCCCEEeCCeEECCCcEECCCeEEeC
Confidence 345556677777777777776665 6677777777766663 456666666554
No 190
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=98.39 E-value=9.4e-07 Score=79.74 Aligned_cols=44 Identities=18% Similarity=0.225 Sum_probs=33.6
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCcee
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTL 369 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i 369 (379)
+.+||++|.||++|.|.++ +.||++|+||.|+.|... |.+++++
T Consensus 193 ~p~IGd~V~IGaga~Ilgg---------v~IG~~a~IGAgSvV~~d-Vp~~~~v 236 (273)
T PRK11132 193 HPKIREGVMIGAGAKILGN---------IEVGRGAKIGAGSVVLQP-VPPHTTA 236 (273)
T ss_pred CCEECCCcEEcCCCEEcCC---------CEECCCCEECCCCEECcc-cCCCcEE
Confidence 4688888888888888887 888888888888888654 5555555
No 191
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.38 E-value=7.6e-07 Score=87.72 Aligned_cols=71 Identities=18% Similarity=0.340 Sum_probs=35.7
Q ss_pred CCeEEecCeEECCCcEECCCCC-------CCcE-----EeceEECCCCEECCCcEEeecccccccccceEECCCcEECCC
Q 016989 288 KNATIIGDVYVHPSAKIHPTAK-------ENAV-----VTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDE 355 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~-------~~~~-----i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~ 355 (379)
+++.|.+++.||+++.|++++. ++|. +.+|+||++|.||++|+|.++ ++||++|.|+++
T Consensus 273 ~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~---------~~Ig~~~~Ig~~ 343 (450)
T PRK14360 273 PQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPE---------AQIGSNCRIGNF 343 (450)
T ss_pred CCCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECCC---------CEEeCceEECCC
Confidence 3444444555555555554433 1222 234555666666666666544 555555555555
Q ss_pred cEEeccEECCCc
Q 016989 356 VVVTNSIVLPNK 367 (379)
Q Consensus 356 ~~i~~~ii~~~~ 367 (379)
+.|.+++|++++
T Consensus 344 ~~i~~~~i~~~~ 355 (450)
T PRK14360 344 VEIKKSQLGEGS 355 (450)
T ss_pred EEEeccccCCCc
Confidence 555444444433
No 192
>PRK10191 putative acyl transferase; Provisional
Probab=98.38 E-value=1.7e-06 Score=71.03 Aligned_cols=48 Identities=17% Similarity=0.174 Sum_probs=31.2
Q ss_pred eEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCceecccc
Q 016989 317 AIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSV 373 (379)
Q Consensus 317 s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~ 373 (379)
++||++|.||+++.|.++ +.||++|.|+.++.|.+.+-.....+|...
T Consensus 93 ~~IGd~~~Ig~~~~I~~~---------v~IG~~~~Igags~V~~dv~~~~~v~G~pA 140 (146)
T PRK10191 93 PHIGNGVELGANVIILGD---------ITIGNNVTVGAGSVVLDSVPDNALVVGEKA 140 (146)
T ss_pred CEECCCcEEcCCCEEeCC---------CEECCCCEECCCCEECCccCCCcEEEccCc
Confidence 466677777777666665 777777777777777666555555555444
No 193
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=98.38 E-value=1.4e-06 Score=78.60 Aligned_cols=69 Identities=14% Similarity=0.077 Sum_probs=42.4
Q ss_pred CCeEEecCeEECCCcEECCCCC-CCc----EEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-cc
Q 016989 288 KNATIIGDVYVHPSAKIHPTAK-ENA----VVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NS 361 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~-~~~----~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ 361 (379)
.++.|+..+.||++++|++++. .+. ...+++||++|.||.+|.|..+ ++||++|+|+.++.|. ++
T Consensus 143 ~~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgDnv~IGa~s~I~~G---------v~IGdgavIgag~vV~~gt 213 (272)
T PRK11830 143 TWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEG---------VIVEEGSVLGMGVFLGQST 213 (272)
T ss_pred cccEECCCCEECCCcEECCCccCCCCccccCcCCeEEcCCCEECCCCEEcCC---------CEECCCCEEcCCCEEcCCe
Confidence 3345555555555555555543 110 1125778888888888777666 7777777777777774 66
Q ss_pred EECC
Q 016989 362 IVLP 365 (379)
Q Consensus 362 ii~~ 365 (379)
.|++
T Consensus 214 ~I~~ 217 (272)
T PRK11830 214 KIYD 217 (272)
T ss_pred EECc
Confidence 6664
No 194
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=98.37 E-value=1.2e-06 Score=72.88 Aligned_cols=52 Identities=25% Similarity=0.264 Sum_probs=24.0
Q ss_pred CeEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe
Q 016989 295 DVYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT 359 (379)
Q Consensus 295 ~~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~ 359 (379)
++.||+++.|+++| .|..|.||++|.||.++.|-++ +.||++|.||.|+.|.
T Consensus 72 p~~IG~~vtIGH~a----ivHGc~Ig~~~lIGmgA~vldg---------a~IG~~~iVgAgalV~ 123 (176)
T COG0663 72 PVTIGDDVTIGHGA----VVHGCTIGDNVLIGMGATVLDG---------AVIGDGSIVGAGALVT 123 (176)
T ss_pred CeEECCCcEEcCcc----EEEEeEECCCcEEecCceEeCC---------cEECCCcEEccCCccc
Confidence 33444444444322 3444445555555554444444 4444444444444444
No 195
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=98.37 E-value=2.4e-05 Score=71.88 Aligned_cols=177 Identities=15% Similarity=0.235 Sum_probs=110.0
Q ss_pred ceEEEEEecCCCCCCccCCCCCCCCCCCceeC-CcchhHHHHHhcCc----------EEE-EcccchHHHHHHHHhhccc
Q 016989 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLG-GQPMVHHPISACKR----------IYL-VGFYEEREFALYVSSISNE 75 (379)
Q Consensus 8 ~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~-g~pli~~~i~~l~~----------iiv-~~~~~~~~i~~~l~~~~~~ 75 (379)
++.+|+|||| .||||+- ..||.|+||. |+++++..++++.. .+| ++...++...+|+.++..
T Consensus 3 kvavl~LaGG--~GTRLG~---~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~~~~- 76 (300)
T cd00897 3 KLVVLKLNGG--LGTSMGC---TGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKKYAG- 76 (300)
T ss_pred cEEEEEecCC--cccccCC---CCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHHcCC-
Confidence 5789999999 9999977 8899999995 88999999999864 344 444444568888876432
Q ss_pred CCccEEEecC------------------------CCCCChHHHHHHH-----HHhhccCCCCeEEEEcCCeee-cCChHH
Q 016989 76 LRIPVRYLRE------------------------DKPHGSAGALYNF-----RDLIMEDNPSHIFLLNCDVCC-SFPLPE 125 (379)
Q Consensus 76 ~~~~i~~~~~------------------------~~~~g~~~al~~~-----~~~i~~~~~~~~lv~~gD~i~-~~dl~~ 125 (379)
.+..+.+..| ..+.|.++..... ++.+....-+++.+.+.|++. ..| ..
T Consensus 77 ~~~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~D-p~ 155 (300)
T cd00897 77 VNVDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVD-LR 155 (300)
T ss_pred CccCeEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCC-HH
Confidence 1111211110 1244555443321 333333334689999999965 333 33
Q ss_pred HHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCCC--cEEEeeecCCCc--------ccceeeeeEEEeCHhhHHHh
Q 016989 126 MLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN--ELLHYTEKPETF--------VSDLINCGVYVFTPDIFNAI 194 (379)
Q Consensus 126 ~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~--~v~~~~ekp~~~--------~~~~~~~Giy~~~~~~l~~l 194 (379)
++-.|..+++++++=+.+... ..+.-|.+... +| +|..+.+-|... .-.+.+++.++|+-+.++.+
T Consensus 156 ~lg~~~~~~~~~~~evv~Kt~-~dek~G~l~~~--~g~~~vvEyse~p~e~~~~~~~~~~~~~~nt~n~~~~l~~L~~~ 231 (300)
T cd00897 156 ILNHMVDNKAEYIMEVTDKTR-ADVKGGTLIQY--EGKLRLLEIAQVPKEHVDEFKSIKKFKIFNTNNLWVNLKAVKRV 231 (300)
T ss_pred HHHHHHhcCCceEEEEeecCC-CCCcccEEEEE--CCEEEEEEeccCCHHHHHhhcCcccceEEEEeEEEEEHHHHHHH
Confidence 666677888887664444321 12344555543 34 466666655321 34578999999997776654
No 196
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=1.5e-06 Score=82.69 Aligned_cols=57 Identities=21% Similarity=0.243 Sum_probs=42.5
Q ss_pred CCeEEecCeEECCCcEECCCCC--CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECC
Q 016989 288 KNATIIGDVYVHPSAKIHPTAK--ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVED 354 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~--~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~ 354 (379)
+++.|++++.|++++.|+++|. .++.|.+|+|.++|.||+++.|.+ |+|+++|+||+
T Consensus 266 ~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~----------sIi~~~~~ig~ 324 (358)
T COG1208 266 PGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGD----------SIIGENCKIGA 324 (358)
T ss_pred CCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEee----------eEEcCCcEECC
Confidence 4444444444444444444444 556899999999999999999999 99999999996
No 197
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=98.37 E-value=8.8e-07 Score=76.46 Aligned_cols=21 Identities=14% Similarity=0.267 Sum_probs=13.4
Q ss_pred cccccceEECCCcEECCCcEE
Q 016989 338 NAKLGITILGEAVGVEDEVVV 358 (379)
Q Consensus 338 ~~~~~~sii~~~~~i~~~~~i 358 (379)
.++....+||++|.|-+++++
T Consensus 76 kge~T~l~IG~~n~IRE~vTi 96 (260)
T COG1043 76 KGEPTRLIIGDNNTIREFVTI 96 (260)
T ss_pred CCCceEEEECCCCeEeeEEEE
Confidence 445556777777766666655
No 198
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=98.36 E-value=1.6e-06 Score=72.92 Aligned_cols=84 Identities=13% Similarity=0.086 Sum_probs=54.7
Q ss_pred CCeEEecCeEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEE-------e
Q 016989 288 KNATIIGDVYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-------T 359 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i-------~ 359 (379)
.+.-|+|.+.||++..|.++ .+.+|+ .++||++|.|-.++.|++..-..+ -.+-.||++|.||.||.| .
T Consensus 66 ~gieIhp~A~IG~g~fIdHg--~GvVIgeta~IGddv~I~~gVTLGgtg~~~g-~RhPtIg~~V~IGagAkILG~I~IGd 142 (194)
T COG1045 66 FGIEIHPGAKIGRGLFIDHG--TGVVIGETAVIGDDVTIYHGVTLGGTGKESG-KRHPTIGNGVYIGAGAKILGNIEIGD 142 (194)
T ss_pred cceeeCCCCeECCceEEcCC--ceEEEcceeEECCCeEEEcceEecCCCCcCC-CCCCccCCCeEECCCCEEEcceEECC
Confidence 34556666666666666665 234666 888888888888888877543332 223577888888888866 3
Q ss_pred ccEECCCceeccccc
Q 016989 360 NSIVLPNKTLNVSVH 374 (379)
Q Consensus 360 ~~ii~~~~~i~~~~~ 374 (379)
|+.||++|+|-++++
T Consensus 143 ~akIGA~sVVlkdVP 157 (194)
T COG1045 143 NAKIGAGSVVLKDVP 157 (194)
T ss_pred CCEECCCceEccCCC
Confidence 555555555555554
No 199
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.34 E-value=2.9e-06 Score=66.14 Aligned_cols=58 Identities=12% Similarity=0.150 Sum_probs=28.1
Q ss_pred ceEECCCCEECCCcEEeeccc------ccccccceEECCCcEECCCcEEe-ccEECCCceecccc
Q 016989 316 NAIVGWKSSIGRWSRVQAEGD------FNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTLNVSV 373 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~------~~~~~~~sii~~~~~i~~~~~i~-~~ii~~~~~i~~~~ 373 (379)
...||++|.|++++.|..+.- +........|+++|.|+.++.|. ++.|++++.|+.++
T Consensus 23 ~i~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~i~~gs 87 (107)
T cd05825 23 PVTIGSDACISQGAYLCTGSHDYRSPAFPLITAPIVIGDGAWVAAEAFVGPGVTIGEGAVVGARS 87 (107)
T ss_pred ceEECCCCEECCCeEeecCCCCCCcCccceecCCEEECCCCEECCCCEECCCCEECCCCEECCCC
Confidence 456666666666666643110 00111235555555555555553 44555555544443
No 200
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.34 E-value=2.2e-06 Score=62.33 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=16.8
Q ss_pred eEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEE
Q 016989 317 AIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV 358 (379)
Q Consensus 317 s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i 358 (379)
..||++|.|+.++.|..+ +.|++++.|+.++.|
T Consensus 45 ~~ig~~~~v~~~~~i~~~---------~~ig~~~~i~~~s~v 77 (78)
T cd00208 45 TIIGDNVEIGANAVIHGG---------VKIGDNAVIGAGAVV 77 (78)
T ss_pred cEECCCcEECCCCEEeCC---------CEECCCCEECcCcEe
Confidence 455555555555555444 555555555554443
No 201
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=98.34 E-value=3.9e-06 Score=72.84 Aligned_cols=77 Identities=13% Similarity=0.133 Sum_probs=41.7
Q ss_pred cCeEECCCcEECCCCCCCcEE---eceEECCCCEECCCcEEeecc--cc-----cc--cccceEECCCcEECCCcEEe--
Q 016989 294 GDVYVHPSAKIHPTAKENAVV---TNAIVGWKSSIGRWSRVQAEG--DF-----NA--KLGITILGEAVGVEDEVVVT-- 359 (379)
Q Consensus 294 ~~~~i~~~~~i~~~~~~~~~i---~~s~ig~~~~ig~~~~i~~~~--~~-----~~--~~~~sii~~~~~i~~~~~i~-- 359 (379)
.++.||+++.|+.+| +| .+..||++|.||++|.|.... +. .. .....+||++|.||.+|.|.
T Consensus 74 ~ni~IG~~v~In~~~----~I~d~~~I~IGd~v~Ig~~v~I~~~~h~~~~~~r~~g~~~~~pi~IGd~v~IG~~~~I~~g 149 (203)
T PRK09527 74 SNIHIGRNFYANFNL----TIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPG 149 (203)
T ss_pred CCcEEcCCcEECCCc----EEecCCCEEECCCCEECCCCEEEeCCCCCChhhccccccccCCeEECCCcEECCCCEEcCC
Confidence 345555555555443 44 257899999999999887421 00 00 01125556665555555552
Q ss_pred -----ccEECCCceeccccc
Q 016989 360 -----NSIVLPNKTLNVSVH 374 (379)
Q Consensus 360 -----~~ii~~~~~i~~~~~ 374 (379)
+|+|+++++|..+++
T Consensus 150 v~IG~~~vIgagsvV~kdvp 169 (203)
T PRK09527 150 VTIGDNSVIGAGSVVTKDIP 169 (203)
T ss_pred CEECCCCEECCCCEEcccCC
Confidence 455555555555444
No 202
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.34 E-value=1.2e-06 Score=81.63 Aligned_cols=70 Identities=21% Similarity=0.293 Sum_probs=56.3
Q ss_pred ecCeEECCCcEECCCCC--CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCceec
Q 016989 293 IGDVYVHPSAKIHPTAK--ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLN 370 (379)
Q Consensus 293 ~~~~~i~~~~~i~~~~~--~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~ 370 (379)
.++..|.......|++. ..+.+.+|.|+.+|.|.- .|.+ |+|+.+++|+++|.|++|+|.+++.||
T Consensus 271 d~~w~IyT~~~~~pPak~~~~s~v~nSLv~~GciI~G--~V~n----------SVL~~~v~I~~gs~i~~svim~~~~IG 338 (393)
T COG0448 271 DRNWPIYTKNKNLPPAKFVNDSEVSNSLVAGGCIISG--TVEN----------SVLFRGVRIGKGSVIENSVIMPDVEIG 338 (393)
T ss_pred CCCCceeecCCCCCCceEecCceEeeeeeeCCeEEEe--EEEe----------eEEecCeEECCCCEEEeeEEeCCcEEC
Confidence 44445556666666665 566788999999999932 5555 999999999999999999999999999
Q ss_pred cccc
Q 016989 371 VSVH 374 (379)
Q Consensus 371 ~~~~ 374 (379)
+++.
T Consensus 339 ~~~~ 342 (393)
T COG0448 339 EGAV 342 (393)
T ss_pred CCCE
Confidence 9998
No 203
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.33 E-value=2.5e-06 Score=74.72 Aligned_cols=76 Identities=14% Similarity=0.190 Sum_probs=45.3
Q ss_pred CeEEecCeEECCCcEECCCCC--CCcEEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe------
Q 016989 289 NATIIGDVYVHPSAKIHPTAK--ENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT------ 359 (379)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~--~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~------ 359 (379)
++.|.+.++|++++.|+++++ +++.|. ++.||++|.|++++.|..+ ++|+++|.|++++.|.
T Consensus 7 ~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~---------~~Ig~~~~I~~~~~i~~~~~~~ 77 (205)
T cd03352 7 NVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEG---------CIIGDRVIIHSGAVIGSDGFGF 77 (205)
T ss_pred CCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCC---------CEECCCcEECCCCEEcCCCcee
Confidence 344444444444444444433 334553 6666777777766666666 7777777777777662
Q ss_pred --------------ccEECCCceecccc
Q 016989 360 --------------NSIVLPNKTLNVSV 373 (379)
Q Consensus 360 --------------~~ii~~~~~i~~~~ 373 (379)
.++|++++.|++++
T Consensus 78 ~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~ 105 (205)
T cd03352 78 APDGGGWVKIPQLGGVIIGDDVEIGANT 105 (205)
T ss_pred EecCCcEEEcCCcceEEECCCEEECCCC
Confidence 46677777777655
No 204
>PLN02694 serine O-acetyltransferase
Probab=98.32 E-value=2.3e-06 Score=77.27 Aligned_cols=45 Identities=22% Similarity=0.250 Sum_probs=31.0
Q ss_pred eceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCcee
Q 016989 315 TNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTL 369 (379)
Q Consensus 315 ~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i 369 (379)
++++||++|.||++|.|.++ +.||++|+||.|+.|... |.+++++
T Consensus 211 r~piIGd~V~IGagA~Ilgg---------i~IGd~a~IGAgSVV~kd-VP~~~~v 255 (294)
T PLN02694 211 RHPKIGDGVLIGAGATILGN---------VKIGEGAKIGAGSVVLID-VPPRTTA 255 (294)
T ss_pred CccEECCCeEECCeeEECCC---------CEECCCCEECCCCEECCc-CCCCcEE
Confidence 35677777777777777665 788888888888877543 4444443
No 205
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.31 E-value=1.5e-06 Score=85.69 Aligned_cols=87 Identities=15% Similarity=0.211 Sum_probs=44.8
Q ss_pred CCeEEecCeEECCCcEECCCCC-------CCcE-----EeceEECCCCEECCCcEEeeccc--------ccccccceEEC
Q 016989 288 KNATIIGDVYVHPSAKIHPTAK-------ENAV-----VTNAIVGWKSSIGRWSRVQAEGD--------FNAKLGITILG 347 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~-------~~~~-----i~~s~ig~~~~ig~~~~i~~~~~--------~~~~~~~sii~ 347 (379)
+.+.|.+++.||+++.|+++|. ++|. +.+|+|+++|.||++++|+.+.+ ..+.+++|+|+
T Consensus 266 ~~~~I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~ig 345 (448)
T PRK14357 266 PMTFIEGKTRIGEDCEIGPMTRIVDCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKSTIG 345 (448)
T ss_pred CCcEEEeeeEECCCcEECCCceecccEECCCCEEeeeEEEEEEEeCCcEECCCcEECCcccccCCcEecCceeeeccEEc
Confidence 4444444555555555555443 2222 33556666666666666655411 12223334444
Q ss_pred CCcEECCCcEEeccEECCCceeccccc
Q 016989 348 EAVGVEDEVVVTNSIVLPNKTLNVSVH 374 (379)
Q Consensus 348 ~~~~i~~~~~i~~~ii~~~~~i~~~~~ 374 (379)
+++++++.+.+.+++||+++.||.++.
T Consensus 346 ~~~~~~~~~~~~~~~Ig~~~~ig~~~~ 372 (448)
T PRK14357 346 ENTKAQHLTYLGDATVGKNVNIGAGTI 372 (448)
T ss_pred CCcCccccccccCcEECCCcEECCCcc
Confidence 444444444455666777777776653
No 206
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=98.30 E-value=2e-06 Score=81.91 Aligned_cols=29 Identities=7% Similarity=0.077 Sum_probs=20.7
Q ss_pred cceEECCCcEECCCcEEe---ccEECCCceec
Q 016989 342 GITILGEAVGVEDEVVVT---NSIVLPNKTLN 370 (379)
Q Consensus 342 ~~sii~~~~~i~~~~~i~---~~ii~~~~~i~ 370 (379)
++|+|+++|.|++++++. +.++|+++.|+
T Consensus 321 ~~~ii~~~~~i~~~~~~~~~~~~~~g~~~~~~ 352 (353)
T TIGR01208 321 VDSVIGKKVRIKGNRRRPGDLRLTIGDYSQVE 352 (353)
T ss_pred ecCEEcCCCEECCCcccccccceEEcCCceec
Confidence 348888888888887774 35677777664
No 207
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.30 E-value=2.2e-06 Score=83.94 Aligned_cols=75 Identities=11% Similarity=0.091 Sum_probs=50.9
Q ss_pred CCeEEecCeEECCCcEECCCCC--CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECC
Q 016989 288 KNATIIGDVYVHPSAKIHPTAK--ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLP 365 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~--~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~ 365 (379)
++.++.+++.|+..+.++++|. +++.|++|+||++|.|+. +.|.+ |+||++|.|++++.|.+|+||+
T Consensus 252 ~~~~~~~~~~i~g~~~ig~~~~I~~~~~i~~~~i~~~~~I~~-~~i~~----------~~ig~~~~i~~~~~i~~~~ig~ 320 (430)
T PRK14359 252 ETIYIESGVEFEGECELEEGVRILGKSKIENSHIKAHSVIEE-SIIEN----------SDVGPLAHIRPKSEIKNTHIGN 320 (430)
T ss_pred CeeEECCCcEEcCceEECCCCEECCCeEEEeeEECCCCEEec-cEEeC----------CEECCCCEECCCcEEeccEEcC
Confidence 4556677777777777777665 555555555555555544 33333 8888888888888888888888
Q ss_pred Cceecccc
Q 016989 366 NKTLNVSV 373 (379)
Q Consensus 366 ~~~i~~~~ 373 (379)
++.|+..+
T Consensus 321 ~~~i~~~~ 328 (430)
T PRK14359 321 FVETKNAK 328 (430)
T ss_pred cEEEcccE
Confidence 88666644
No 208
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.27 E-value=3.8e-06 Score=71.19 Aligned_cols=36 Identities=8% Similarity=0.124 Sum_probs=19.4
Q ss_pred CeEECCCcEECCCCCCCcEE--eceEECCCCEECCCcEEee
Q 016989 295 DVYVHPSAKIHPTAKENAVV--TNAIVGWKSSIGRWSRVQA 333 (379)
Q Consensus 295 ~~~i~~~~~i~~~~~~~~~i--~~s~ig~~~~ig~~~~i~~ 333 (379)
++.||+++.|+++|. .. .+..||++|.|+++|.|..
T Consensus 62 ~i~IG~~v~I~~~~~---i~~~~~i~IG~~v~Ig~~~~I~~ 99 (169)
T cd03357 62 NIHIGDNFYANFNCT---ILDVAPVTIGDNVLIGPNVQIYT 99 (169)
T ss_pred cCEECCCceEcCCEE---EeccCcEEECCCCEECCCCEEEe
Confidence 445555555554432 11 2456666666666666643
No 209
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=98.26 E-value=7e-06 Score=70.25 Aligned_cols=76 Identities=9% Similarity=0.059 Sum_probs=38.5
Q ss_pred ecCeEECCCcEECCCCCCCcEEe-c--eEECCCCEECCCcEEeeccc-c-------ccc-ccceEECCCcEECCCcEEe-
Q 016989 293 IGDVYVHPSAKIHPTAKENAVVT-N--AIVGWKSSIGRWSRVQAEGD-F-------NAK-LGITILGEAVGVEDEVVVT- 359 (379)
Q Consensus 293 ~~~~~i~~~~~i~~~~~~~~~i~-~--s~ig~~~~ig~~~~i~~~~~-~-------~~~-~~~sii~~~~~i~~~~~i~- 359 (379)
+.++.||+++.+..+| .|. . ..||++|.|+++|.|....- . ... -.++.||++|.||.+|.|.
T Consensus 71 g~~i~iG~~~~in~~~----~i~d~~~I~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~ 146 (183)
T PRK10092 71 GYNIFLGNNFYANFDC----VMLDVCPIRIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNNVWIGGRAVINP 146 (183)
T ss_pred cCCcEEcCCcEECCce----EEecCceEEECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECCCcEECCCCEECC
Confidence 3344445554444443 333 2 27888888888888753210 0 000 1235666666666666553
Q ss_pred ccEECCCceeccc
Q 016989 360 NSIVLPNKTLNVS 372 (379)
Q Consensus 360 ~~ii~~~~~i~~~ 372 (379)
++.||++++|+.+
T Consensus 147 gv~IG~~~vIgag 159 (183)
T PRK10092 147 GVTIGDNVVVASG 159 (183)
T ss_pred CCEECCCCEECCC
Confidence 4455554444443
No 210
>PRK10502 putative acyl transferase; Provisional
Probab=98.26 E-value=4e-06 Score=71.93 Aligned_cols=77 Identities=12% Similarity=0.067 Sum_probs=46.3
Q ss_pred eEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecccc------cccccceEECCCcEECCCcEE-eccEECCCce
Q 016989 296 VYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDF------NAKLGITILGEAVGVEDEVVV-TNSIVLPNKT 368 (379)
Q Consensus 296 ~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~------~~~~~~sii~~~~~i~~~~~i-~~~ii~~~~~ 368 (379)
..||+++.|+++|.-. ....+.||++|.|++++.|..+.-. .......+||++|.||.+|.| .++.|++++.
T Consensus 72 ~~IG~~~~Ig~~~~I~-~~~~v~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~v 150 (182)
T PRK10502 72 LTIGDYAWIGDDVWLY-NLGEITIGAHCVISQKSYLCTGSHDYSDPHFDLNTAPIVIGEGCWLAADVFVAPGVTIGSGAV 150 (182)
T ss_pred EEECCCeEECCCceec-ccCceEECCCcEECCCeEEECCCCCCcCCCcccccCCEEEcCCcEEcCCCEEcCCCEECCCCE
Confidence 5567777777665400 0126788888888888887543210 011133677777777777777 3666666666
Q ss_pred ecccc
Q 016989 369 LNVSV 373 (379)
Q Consensus 369 i~~~~ 373 (379)
|+.++
T Consensus 151 Iga~s 155 (182)
T PRK10502 151 VGARS 155 (182)
T ss_pred ECCCC
Confidence 66544
No 211
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.25 E-value=5.8e-06 Score=63.57 Aligned_cols=62 Identities=21% Similarity=0.269 Sum_probs=27.9
Q ss_pred eEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCceecc
Q 016989 296 VYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNV 371 (379)
Q Consensus 296 ~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~~ 371 (379)
+++++++.+++++. ....++||++|.||+++.|.+. +.||++|.|+. .|.+|+|++++.|+.
T Consensus 12 v~ig~~~~I~~~~~---i~g~v~IG~~~~Ig~~~~I~~~---------v~IG~~~~Ig~--~i~~svi~~~~~i~~ 73 (101)
T cd05635 12 IYIGKDAVIEPFAV---IEGPVYIGPGSRVKMGARIYGN---------TTIGPTCKIGG--EVEDSIIEGYSNKQH 73 (101)
T ss_pred EEECCCCEECCCCE---EeCCCEECCCCEECCCCEEeCc---------CEECCCCEECC--EECccEEcCCCEecC
Confidence 44444444443332 1124455555555555555444 55555555543 344444444444433
No 212
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.24 E-value=8.8e-06 Score=68.98 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=19.6
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEecc
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNS 361 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ 361 (379)
+++||++|.||.+|.|.++ +.||++|.||.++.|...
T Consensus 118 ~v~IG~~~~Ig~~a~I~~g---------v~Ig~~~~VgagavV~~~ 154 (169)
T cd03357 118 PITIGDNVWIGGGVIILPG---------VTIGDNSVIGAGSVVTKD 154 (169)
T ss_pred CcEeCCCEEECCCCEEeCC---------CEECCCCEECCCCEEccc
Confidence 3455555555555555544 555555555555555443
No 213
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=98.23 E-value=7.6e-06 Score=70.00 Aligned_cols=111 Identities=22% Similarity=0.256 Sum_probs=72.3
Q ss_pred eEEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc------EEEEccc--chHHHHHHHHhhcccCCccE
Q 016989 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFY--EEREFALYVSSISNELRIPV 80 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~------iiv~~~~--~~~~i~~~l~~~~~~~~~~i 80 (379)
+.++|+.|- .||--.| -|.|+|++|+|||+++|+++.+ ++|.+.. .+..++.+..+ .|+.+
T Consensus 3 ~I~~IiQAR--mgStRLp-----gKvLlpL~~~pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~----~G~~v 71 (241)
T COG1861 3 MILVIIQAR--MGSTRLP-----GKVLLPLGGEPMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRS----HGFYV 71 (241)
T ss_pred cEEEEeeec--ccCccCC-----cchhhhcCCCchHHHHHHHHhccccccceEEEecCCcchhHHHHHHHH----cCeeE
Confidence 345555555 4555555 5999999999999999999986 6665543 22356666654 23322
Q ss_pred EEecCCCCCChHHHHH-HHHHhhccCCCCeEEEEcCCeee-c-CChHHHHHHHHhcCCce
Q 016989 81 RYLREDKPHGSAGALY-NFRDLIMEDNPSHIFLLNCDVCC-S-FPLPEMLDAHRNYGGMG 137 (379)
Q Consensus 81 ~~~~~~~~~g~~~al~-~~~~~i~~~~~~~~lv~~gD~i~-~-~dl~~~l~~~~~~~~~~ 137 (379)
..|+.+.++ .-...++.-..+.++=+.||.|+ + .-++.+++.|.+++++.
T Consensus 72 -------frGs~~dVL~Rf~~a~~a~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaDY 124 (241)
T COG1861 72 -------FRGSEEDVLQRFIIAIKAYSADVVVRVTGDNPFLDPELVDAAVDRHLEKGADY 124 (241)
T ss_pred -------ecCCHHHHHHHHHHHHHhcCCCeEEEeeCCCCCCCHHHHHHHHHHHHhcCCcc
Confidence 234444443 33333333334578889999999 4 44688899999988764
No 214
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=98.22 E-value=2.4e-06 Score=73.86 Aligned_cols=76 Identities=18% Similarity=0.152 Sum_probs=55.9
Q ss_pred CCCCeEEecCeEECCCcEECCCCCCCcEEe-ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-----
Q 016989 286 GTKNATIIGDVYVHPSAKIHPTAKENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT----- 359 (379)
Q Consensus 286 ~~~~~~i~~~~~i~~~~~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~----- 359 (379)
++|++.|.|++.+++++.|+|.| .|+ +..||++|.|++++.|.+. +.||++++|-++|.|.
T Consensus 6 IHPTAiIe~gA~ig~~V~IGpf~----iIg~~V~ig~~t~l~shvvv~G~---------T~IG~~n~I~~~A~iG~~pQd 72 (260)
T COG1043 6 IHPTAIIEPGAEIGEDVKIGPFC----IIGPNVEIGDGTVLKSHVVVEGH---------TTIGRNNRIFPFASIGEDPQD 72 (260)
T ss_pred cCcceeeCCCCCcCCCCEECceE----EECCCcEECCCcEEcccEEEeCC---------eEECCCCEEecccccCCCCcc
Confidence 56788888888888888888654 566 7778888888888887776 7888887777777662
Q ss_pred --------ccEECCCceeccccc
Q 016989 360 --------NSIVLPNKTLNVSVH 374 (379)
Q Consensus 360 --------~~ii~~~~~i~~~~~ 374 (379)
.-+||+++.|-+.|+
T Consensus 73 lKykge~T~l~IG~~n~IRE~vT 95 (260)
T COG1043 73 LKYKGEPTRLIIGDNNTIREFVT 95 (260)
T ss_pred cccCCCceEEEECCCCeEeeEEE
Confidence 236777777766654
No 215
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=98.22 E-value=6e-06 Score=70.69 Aligned_cols=44 Identities=25% Similarity=0.312 Sum_probs=26.2
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCcee
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTL 369 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i 369 (379)
+..||++|.||.+|.|..+ +.||++|.|+.++.|... +.+++++
T Consensus 129 ~v~IGd~v~IG~~a~I~~g---------v~IG~~~vIgagsvV~~d-i~~~~i~ 172 (183)
T PRK10092 129 PVTIGNNVWIGGRAVINPG---------VTIGDNVVVASGAVVTKD-VPDNVVV 172 (183)
T ss_pred CeEECCCcEECCCCEECCC---------CEECCCCEECCCCEEccc-cCCCcEE
Confidence 4566666666666666655 666666666666666543 3444444
No 216
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=98.22 E-value=7e-06 Score=73.93 Aligned_cols=83 Identities=10% Similarity=0.076 Sum_probs=49.8
Q ss_pred CeEEecCeEECCCcEECCCC-C-CCcEEeceEECCCCEECCCcEEeecccc-----cccccceEECCCcEECCCcEEecc
Q 016989 289 NATIIGDVYVHPSAKIHPTA-K-ENAVVTNAIVGWKSSIGRWSRVQAEGDF-----NAKLGITILGEAVGVEDEVVVTNS 361 (379)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~-~-~~~~i~~s~ig~~~~ig~~~~i~~~~~~-----~~~~~~sii~~~~~i~~~~~i~~~ 361 (379)
+++++++++|.+++.|..+| . -.+.| ++.|+++|.||++|+|..+..- ...-..+.||++|.||.||.| +.
T Consensus 165 GAyLGeGtvVm~~a~VN~nAgtIG~~iI-~g~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~IGe~~~IGagA~I-GI 242 (319)
T TIGR03535 165 GAHLAEGTTVMHEGFVNFNAGTLGASMV-EGRISAGVVVGDGSDIGGGASIMGTLSGGGKEVISIGERCLLGANSGL-GI 242 (319)
T ss_pred ccEECCCCEEcCCCEEccCceEecCceE-EEEEccCCEECCCCEECCCceecceecCCCcccEEECCCcEECCCCEE-Ce
Confidence 44444444444444444444 1 11234 5777888888888888776431 111223778888888888887 66
Q ss_pred EECCCceecccc
Q 016989 362 IVLPNKTLNVSV 373 (379)
Q Consensus 362 ii~~~~~i~~~~ 373 (379)
.||++|+||.+.
T Consensus 243 ~IGd~~VVGAGa 254 (319)
T TIGR03535 243 SLGDDCVVEAGL 254 (319)
T ss_pred EECCCCEECCCC
Confidence 666666666654
No 217
>PLN02357 serine acetyltransferase
Probab=98.21 E-value=3.9e-06 Score=78.03 Aligned_cols=38 Identities=18% Similarity=0.259 Sum_probs=32.3
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccE
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSI 362 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~i 362 (379)
+++||++|.||+++.|.++ +.||++++||.|+.|...+
T Consensus 278 ~piIGd~V~IGagA~Ilgg---------V~IGdga~IGAgSVV~~dV 315 (360)
T PLN02357 278 HPKIGDGVLIGAGTCILGN---------ITIGEGAKIGAGSVVLKDV 315 (360)
T ss_pred CceeCCCeEECCceEEECC---------eEECCCCEECCCCEECccc
Confidence 4789999999999888776 9999999999999986543
No 218
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=98.19 E-value=9.5e-06 Score=68.19 Aligned_cols=34 Identities=26% Similarity=0.293 Sum_probs=19.1
Q ss_pred eEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe
Q 016989 317 AIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT 359 (379)
Q Consensus 317 s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~ 359 (379)
++||++|.||++|.|.++ ++||++|.||.++.|.
T Consensus 114 ~~Ig~~v~Ig~~a~I~~~---------v~IG~~~~Iga~s~V~ 147 (162)
T TIGR01172 114 PTVGEGVMIGAGAKVLGN---------IEVGENAKIGANSVVL 147 (162)
T ss_pred CEECCCcEEcCCCEEECC---------cEECCCCEECCCCEEC
Confidence 355555555555555554 5555555555555554
No 219
>PLN02739 serine acetyltransferase
Probab=98.18 E-value=5.6e-06 Score=76.37 Aligned_cols=43 Identities=14% Similarity=0.193 Sum_probs=27.5
Q ss_pred eEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCcee
Q 016989 317 AIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTL 369 (379)
Q Consensus 317 s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i 369 (379)
.+||++|.||+++.|.++ +.||++|+||.|+.|... |.+++++
T Consensus 258 p~IGd~V~IGagA~IlG~---------V~IGd~aiIGAGSVV~kD-VP~~stv 300 (355)
T PLN02739 258 PKIGDGALLGACVTILGN---------ISIGAGAMVAAGSLVLKD-VPSHSMV 300 (355)
T ss_pred cEECCCCEEcCCCEEeCC---------eEECCCCEECCCCEECCC-CCCCcEE
Confidence 567777777777777665 777777777777776432 4444433
No 220
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=98.18 E-value=7.8e-06 Score=70.95 Aligned_cols=44 Identities=20% Similarity=0.283 Sum_probs=35.9
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCcee
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTL 369 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i 369 (379)
..+||++|.||.++.|..+ +.||++|.|+.++.|... +.+++++
T Consensus 131 pi~IGd~v~IG~~~~I~~g---------v~IG~~~vIgagsvV~kd-vp~~~v~ 174 (203)
T PRK09527 131 PITIGNNVWIGSHVVINPG---------VTIGDNSVIGAGSVVTKD-IPPNVVA 174 (203)
T ss_pred CeEECCCcEECCCCEEcCC---------CEECCCCEECCCCEEccc-CCCCcEE
Confidence 4789999999999999888 999999999999998754 4555554
No 221
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=98.16 E-value=1e-05 Score=65.41 Aligned_cols=19 Identities=5% Similarity=0.102 Sum_probs=8.2
Q ss_pred CeEEecCeEECCCcEECCC
Q 016989 289 NATIIGDVYVHPSAKIHPT 307 (379)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~ 307 (379)
++.+...+.||+++.|.++
T Consensus 7 ~~~V~~~a~IG~GtvI~~g 25 (147)
T cd04649 7 ADRVRLGAYLAEGTTVMHE 25 (147)
T ss_pred CCEECCCCEECCCcEECCC
Confidence 3344444444444444433
No 222
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.15 E-value=6.6e-06 Score=79.93 Aligned_cols=49 Identities=22% Similarity=0.245 Sum_probs=41.6
Q ss_pred cEECCCCC--CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEec
Q 016989 302 AKIHPTAK--ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTN 360 (379)
Q Consensus 302 ~~i~~~~~--~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~ 360 (379)
+.|+++|. ++|.|++|+|+++|.||++|+|.+ |+|+++|+|+++++|.+
T Consensus 332 svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~----------~ii~~~~~i~~~~~i~~ 382 (407)
T PRK00844 332 SVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRR----------AILDKNVVVPPGATIGV 382 (407)
T ss_pred CEECCCCEECCCCEEeeeEECCCCEECCCCEEEe----------eEECCCCEECCCCEECC
Confidence 44444444 667899999999999999999988 99999999999998866
No 223
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.15 E-value=3e-06 Score=82.73 Aligned_cols=52 Identities=23% Similarity=0.263 Sum_probs=46.5
Q ss_pred cEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCceeccccc
Q 016989 312 AVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVH 374 (379)
Q Consensus 312 ~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~ 374 (379)
+.+.+|+||++|.| ++|.|.+ |+||++|.||++|.|++|+|++++.|++++.
T Consensus 323 ~~~~~s~i~~~~~i-~~~~i~~----------svi~~~~~I~~~~~i~~svi~~~~~I~~~~~ 374 (425)
T PRK00725 323 GMAINSLVSGGCII-SGAVVRR----------SVLFSRVRVNSFSNVEDSVLLPDVNVGRSCR 374 (425)
T ss_pred ceEEeCEEcCCcEE-cCccccC----------CEECCCCEECCCCEEeeeEEcCCCEECCCCE
Confidence 35668999999999 7888876 9999999999999999999999999999876
No 224
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.13 E-value=1.7e-05 Score=61.76 Aligned_cols=46 Identities=24% Similarity=0.259 Sum_probs=33.0
Q ss_pred EeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCcee
Q 016989 314 VTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTL 369 (379)
Q Consensus 314 i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i 369 (379)
...++||++|.|++++.+..+ +.|+++|.|+.++.|.. -+.+++.+
T Consensus 56 ~~~~~Ig~~~~ig~~~~i~~~---------~~ig~~~~i~~~~~v~~-~i~~~~i~ 101 (109)
T cd04647 56 SAPIVIGDDVWIGANVVILPG---------VTIGDGAVVGAGSVVTK-DVPPNSIV 101 (109)
T ss_pred cCCeEECCCCEECCCCEEcCC---------CEECCCCEECCCCEEee-ECCCCCEE
Confidence 347778888888888777665 88888888888887773 35565555
No 225
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=98.10 E-value=8.3e-06 Score=77.98 Aligned_cols=61 Identities=15% Similarity=0.279 Sum_probs=45.3
Q ss_pred eEEecCeEECC----CcEECCCCC--CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEec
Q 016989 290 ATIIGDVYVHP----SAKIHPTAK--ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTN 360 (379)
Q Consensus 290 ~~i~~~~~i~~----~~~i~~~~~--~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~ 360 (379)
+.|++++.|++ ++.++++|. ++|.|.+|+|+++|.||++|+|.+ |+||++|+|+.++.|.|
T Consensus 295 ~~ig~~~~I~~~~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~----------~ivg~~~~i~~~~~i~~ 361 (361)
T TIGR02091 295 SLVSEGCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRN----------AIIDKNVRIGEGVVIGN 361 (361)
T ss_pred CEECCCCEECCCEEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEEee----------eEECCCCEECCCCEeCC
Confidence 44455555544 445555555 567788999999999999999976 99999999999888764
No 226
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=98.09 E-value=3.1e-05 Score=74.89 Aligned_cols=84 Identities=21% Similarity=0.282 Sum_probs=55.7
Q ss_pred eEEEEcCCeeecCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCCC---------cEEEeeecCCC------
Q 016989 109 HIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN---------ELLHYTEKPET------ 173 (379)
Q Consensus 109 ~~lv~~gD~i~~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~---------~v~~~~ekp~~------ 173 (379)
-++|..+|.++...-...++ +. +..++++..+.+..-++..|+...+. ++ .+.++..||..
T Consensus 55 Gv~V~s~D~vl~~~~~~~~~-~~--~~g~~~la~p~~~~~at~HGVfv~~~-~~~~~~~~~~~~v~~~L~KpS~eem~~~ 130 (414)
T PF07959_consen 55 GVLVCSGDMVLSVPDDPLID-WD--EPGVTALAHPSSLEYATNHGVFVLDR-QGPDEEDLEYREVKDFLQKPSEEEMRAS 130 (414)
T ss_pred ceEEEecccccccCccccCC-CC--CCCEEEEEeeCCHHHhcCCeEEEeCC-CCCccccchhhhHHHhhcCCCHHHHHhC
Confidence 48999999555222112222 12 25577788887766788899999886 55 67778778742
Q ss_pred -----cccceeeeeEEEeCHhhHHHhhc
Q 016989 174 -----FVSDLINCGVYVFTPDIFNAIQG 196 (379)
Q Consensus 174 -----~~~~~~~~Giy~~~~~~l~~l~~ 196 (379)
...-..++|++.|+.+..+.|-.
T Consensus 131 ~av~~~~~~~ldsG~~~~s~~~~e~L~~ 158 (414)
T PF07959_consen 131 GAVLPDGNVLLDSGIVFFSSKAVESLLY 158 (414)
T ss_pred CcccCCCcccccccceeccHHHHHHHHH
Confidence 12445689999999887765543
No 227
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=98.08 E-value=8.1e-06 Score=78.28 Aligned_cols=68 Identities=16% Similarity=0.307 Sum_probs=50.2
Q ss_pred CeEEecCeEEC---CCcEECCCCC--CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEE
Q 016989 289 NATIIGDVYVH---PSAKIHPTAK--ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIV 363 (379)
Q Consensus 289 ~~~i~~~~~i~---~~~~i~~~~~--~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii 363 (379)
++.|++++.|+ +++.|+++|. ++|.|.+|+|+++|.|++++++.+ |+||++++|++++++.+..+
T Consensus 289 ~~~Ig~~~~i~~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~----------~ii~~~~~v~~~~~~~~~~~ 358 (369)
T TIGR02092 289 NSLVANGCIIEGKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLEN----------VIIDKDVVIEPNVKIAGTSE 358 (369)
T ss_pred EeEEcCCCEEeeEEeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEEE----------EEECCCCEECCCCEeCCCCC
Confidence 34444444443 2234444444 677899999999999999999988 99999999999999977655
Q ss_pred CCC
Q 016989 364 LPN 366 (379)
Q Consensus 364 ~~~ 366 (379)
.|.
T Consensus 359 ~~~ 361 (369)
T TIGR02092 359 QPL 361 (369)
T ss_pred ccE
Confidence 553
No 228
>PRK10502 putative acyl transferase; Provisional
Probab=98.07 E-value=2.2e-05 Score=67.39 Aligned_cols=16 Identities=13% Similarity=0.023 Sum_probs=8.4
Q ss_pred eEEecCeEECCCcEEC
Q 016989 290 ATIIGDVYVHPSAKIH 305 (379)
Q Consensus 290 ~~i~~~~~i~~~~~i~ 305 (379)
..|++++.|++++.+.
T Consensus 72 ~~IG~~~~Ig~~~~I~ 87 (182)
T PRK10502 72 LTIGDYAWIGDDVWLY 87 (182)
T ss_pred EEECCCeEECCCceec
Confidence 3445555555555554
No 229
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=98.05 E-value=3.8e-05 Score=66.44 Aligned_cols=78 Identities=8% Similarity=0.182 Sum_probs=42.4
Q ss_pred CeEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeeccc--------c----------cccccceEECCCcEECCCc
Q 016989 295 DVYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGD--------F----------NAKLGITILGEAVGVEDEV 356 (379)
Q Consensus 295 ~~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~--------~----------~~~~~~sii~~~~~i~~~~ 356 (379)
.+.||+++.|++++.-. .-.++.||++|.|++++.|.+... + ......++||++|.||.+|
T Consensus 65 ~i~IG~~v~Ig~~v~I~-~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~ig~~~ 143 (192)
T PRK09677 65 KLFFGDNVQVNDYVHIA-CIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPDMRTLESSAVVIGQRVWIGENV 143 (192)
T ss_pred eEEECCCCEECCCcEEc-cCceEEECCCCEECCCeEEECCCCccccccccccccccChhhcccccCCeEEcCCcEECCCC
Confidence 34555555555444300 012567777777777777765311 0 0112346677777777766
Q ss_pred EEe-ccEECCCceecccc
Q 016989 357 VVT-NSIVLPNKTLNVSV 373 (379)
Q Consensus 357 ~i~-~~ii~~~~~i~~~~ 373 (379)
.|. +++|++++.|++++
T Consensus 144 ~i~~g~~Ig~~~~Iga~s 161 (192)
T PRK09677 144 TILPGVSIGNGCIVGANS 161 (192)
T ss_pred EEcCCCEECCCCEECCCC
Confidence 663 56666666665554
No 230
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.03 E-value=9.2e-06 Score=79.42 Aligned_cols=54 Identities=15% Similarity=0.274 Sum_probs=47.6
Q ss_pred CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECC-------------------Cceec
Q 016989 310 ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLP-------------------NKTLN 370 (379)
Q Consensus 310 ~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~-------------------~~~i~ 370 (379)
.++.+++|+||++|.| +++.|++ |+||++|.||++|.|.+|+|++ ++.||
T Consensus 302 ~~~~~~~~~ig~~~~i-~~~~i~~----------svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig 370 (429)
T PRK02862 302 LDATITESIIAEGCII-KNCSIHH----------SVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIG 370 (429)
T ss_pred cccEEEeCEECCCCEE-CCcEEEE----------EEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEEC
Confidence 3457788999999999 8899977 9999999999999999999976 68888
Q ss_pred cccc
Q 016989 371 VSVH 374 (379)
Q Consensus 371 ~~~~ 374 (379)
+++.
T Consensus 371 ~~~~ 374 (429)
T PRK02862 371 EGTT 374 (429)
T ss_pred CCCE
Confidence 8876
No 231
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=98.01 E-value=4.2e-05 Score=62.94 Aligned_cols=44 Identities=23% Similarity=0.360 Sum_probs=25.0
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCcee
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTL 369 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i 369 (379)
+++||++|.||.+|.|..+ +.||++|.||.++.|... +.+++++
T Consensus 73 ~~~Ig~~~~Ig~~~~i~~g---------v~Ig~~~vIgags~V~~~-v~~~~v~ 116 (145)
T cd03349 73 DVIIGNDVWIGHGATILPG---------VTIGDGAVIAAGAVVTKD-VPPYAIV 116 (145)
T ss_pred CcEECCCCEECCCCEEeCC---------CEECCCCEECCCCEEccc-cCCCeEE
Confidence 5566666666666666555 666666666666665443 3444433
No 232
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.00 E-value=3.8e-05 Score=59.08 Aligned_cols=37 Identities=22% Similarity=0.386 Sum_probs=24.3
Q ss_pred eceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEec
Q 016989 315 TNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTN 360 (379)
Q Consensus 315 ~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~ 360 (379)
..++||++|.|+.++.+..+ +.|+++|.|+.++.|.+
T Consensus 53 ~~~~Ig~~~~Ig~~~~i~~~---------~~Ig~~~~i~~~~~i~~ 89 (101)
T cd03354 53 RHPTIGDNVVIGAGAKILGN---------ITIGDNVKIGANAVVTK 89 (101)
T ss_pred CCCEECCCcEEcCCCEEECc---------CEECCCCEECCCCEECc
Confidence 45566666666666666665 66677777766666654
No 233
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=98.00 E-value=2.8e-05 Score=67.29 Aligned_cols=45 Identities=22% Similarity=0.320 Sum_probs=36.3
Q ss_pred eceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCcee
Q 016989 315 TNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTL 369 (379)
Q Consensus 315 ~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~~i 369 (379)
.+++||++|.||.++.|.++ ++||++|.|+.++.|..+ +.+++.+
T Consensus 129 ~~v~Ig~~~~ig~~~~i~~g---------~~Ig~~~~Iga~s~v~~~-i~~~~~~ 173 (192)
T PRK09677 129 SAVVIGQRVWIGENVTILPG---------VSIGNGCIVGANSVVTKS-IPENTVI 173 (192)
T ss_pred CCeEEcCCcEECCCCEEcCC---------CEECCCCEECCCCEECcc-cCCCcEE
Confidence 46788888888888888887 899999999999988775 5566555
No 234
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=97.99 E-value=2.3e-05 Score=66.00 Aligned_cols=37 Identities=16% Similarity=0.274 Sum_probs=32.4
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEecc
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNS 361 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ 361 (379)
+=.||+++.||+++.|-+. -.||++++||.|++|-..
T Consensus 119 hPtIg~~V~IGagAkILG~---------I~IGd~akIGA~sVVlkd 155 (194)
T COG1045 119 HPTIGNGVYIGAGAKILGN---------IEIGDNAKIGAGSVVLKD 155 (194)
T ss_pred CCccCCCeEECCCCEEEcc---------eEECCCCEECCCceEccC
Confidence 5589999999999999887 899999999999988543
No 235
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=97.98 E-value=4.8e-05 Score=59.19 Aligned_cols=38 Identities=18% Similarity=0.203 Sum_probs=30.1
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccE
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSI 362 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~i 362 (379)
...||++|.||.++.|..+ +.|+++|.|+.++.|.+.+
T Consensus 56 ~v~Ig~~~~ig~~~~i~~g---------~~Ig~~~~i~~gs~v~~~~ 93 (107)
T cd05825 56 PIVIGDGAWVAAEAFVGPG---------VTIGEGAVVGARSVVVRDL 93 (107)
T ss_pred CEEECCCCEECCCCEECCC---------CEECCCCEECCCCEEeCcC
Confidence 6778888888888888777 8888888888888886653
No 236
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=97.96 E-value=3e-05 Score=70.34 Aligned_cols=21 Identities=19% Similarity=0.132 Sum_probs=10.2
Q ss_pred CCeEEecCeEECCCcEECCCC
Q 016989 288 KNATIIGDVYVHPSAKIHPTA 308 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~ 308 (379)
.+.+|.+.+.|..+++++++|
T Consensus 177 ~gVrI~~sa~Vr~gA~LGeGT 197 (341)
T TIGR03536 177 KGVRIADTARVRLGAYVGEGT 197 (341)
T ss_pred CCcEEcCCCeEcCCcEECCCC
Confidence 344455555555555555444
No 237
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=97.95 E-value=7.8e-06 Score=49.98 Aligned_cols=35 Identities=20% Similarity=0.361 Sum_probs=24.9
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT 359 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~ 359 (379)
+++||++|.|++++.|.++ +.|+++|.|+++|.|.
T Consensus 1 ~~~Ig~~~~i~~~~~i~~~---------~~Ig~~~~I~~~~~I~ 35 (36)
T PF00132_consen 1 NVVIGDNVIIGPNAVIGGG---------VVIGDNCVIGPGVVIG 35 (36)
T ss_dssp TEEEETTEEEETTEEEETT---------EEE-TTEEEETTEEEE
T ss_pred CCEEcCCCEECCCcEecCC---------CEECCCCEEcCCCEEC
Confidence 4567777777777777766 7777777777777765
No 238
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=97.95 E-value=0.00032 Score=68.51 Aligned_cols=182 Identities=18% Similarity=0.305 Sum_probs=112.7
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeC---CcchhHHHHHhcC----------------c----EEE-Ecccch
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLG---GQPMVHHPISACK----------------R----IYL-VGFYEE 62 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~---g~pli~~~i~~l~----------------~----iiv-~~~~~~ 62 (379)
.++.+|+|||| .||||+- ..||.|++|+ |+++++...+++. . .+| ++....
T Consensus 115 gkvavvlLAGG--qGTRLG~---~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~ 189 (493)
T PLN02435 115 GKLAVVLLSGG--QGTRLGS---SDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTD 189 (493)
T ss_pred CCEEEEEeCCC--cccccCC---CCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchh
Confidence 46778999999 9999998 8899999884 8999999988762 1 233 444445
Q ss_pred HHHHHHHHhhcccCCc---cEEEecC---------------------CCCCChHHHHHHH-----HHhhccCCCCeEEEE
Q 016989 63 REFALYVSSISNELRI---PVRYLRE---------------------DKPHGSAGALYNF-----RDLIMEDNPSHIFLL 113 (379)
Q Consensus 63 ~~i~~~l~~~~~~~~~---~i~~~~~---------------------~~~~g~~~al~~~-----~~~i~~~~~~~~lv~ 113 (379)
+...+|+... ..+|. .|.+..| ..+.|.++..... ++.+....-+++.+.
T Consensus 190 ~~T~~ff~~~-~~FGl~~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~ 268 (493)
T PLN02435 190 EATRKFFESH-KYFGLEADQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDCY 268 (493)
T ss_pred HHHHHHHHhC-CCCCCCccceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEE
Confidence 5688888863 44553 2333222 1255666544432 333333334689999
Q ss_pred cCCeee-cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCCCc--EEEeeecCC-----------Cccccee
Q 016989 114 NCDVCC-SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNE--LLHYTEKPE-----------TFVSDLI 179 (379)
Q Consensus 114 ~gD~i~-~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~~--v~~~~ekp~-----------~~~~~~~ 179 (379)
..|+++ ..--..++-.+...+.++.+-+.+.. ...+.-|.+.....+++ |..+.|-+. ...-...
T Consensus 269 ~vDN~L~~~~DP~flG~~~~~~~d~~~kVv~K~-~~~EkvG~i~~~~~~g~~~vvEYsEl~~~~~~~~~~~~g~L~~~~g 347 (493)
T PLN02435 269 GVDNALVRVADPTFLGYFIDKGVASAAKVVRKA-YPQEKVGVFVRRGKGGPLTVVEYSELDQAMASAINQQTGRLRYCWS 347 (493)
T ss_pred ecccccccccCHHHHHHHHhcCCceEEEeeecC-CCCCceeEEEEecCCCCEEEEEeccCCHHHHhccCccccccccchh
Confidence 999976 33334566667777877765544321 12234476655212444 555555321 1123566
Q ss_pred eeeEEEeCHhhHHHhh
Q 016989 180 NCGVYVFTPDIFNAIQ 195 (379)
Q Consensus 180 ~~Giy~~~~~~l~~l~ 195 (379)
+++.|+|+-++++.+.
T Consensus 348 nI~~h~fs~~fL~~~~ 363 (493)
T PLN02435 348 NVCLHMFTLDFLNQVA 363 (493)
T ss_pred hHHHhhccHHHHHHHH
Confidence 8889999998887764
No 239
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=97.93 E-value=5.9e-05 Score=62.05 Aligned_cols=29 Identities=10% Similarity=0.213 Sum_probs=13.9
Q ss_pred eEECCCcEECCCcEE-eccEECCCceeccc
Q 016989 344 TILGEAVGVEDEVVV-TNSIVLPNKTLNVS 372 (379)
Q Consensus 344 sii~~~~~i~~~~~i-~~~ii~~~~~i~~~ 372 (379)
++||++|.||.+|.| .++.|+++++|+.+
T Consensus 74 ~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgag 103 (145)
T cd03349 74 VIIGNDVWIGHGATILPGVTIGDGAVIAAG 103 (145)
T ss_pred cEECCCCEECCCCEEeCCCEECCCCEECCC
Confidence 555555555555554 24444444444443
No 240
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=97.92 E-value=5.2e-05 Score=64.79 Aligned_cols=91 Identities=18% Similarity=0.211 Sum_probs=58.4
Q ss_pred CCCCCceeCC--cchhHHHHHhcCc----EEEEcccchHHHHHHHHhhcccCCccEEEecCCCCCChHHHHHHHHHhhcc
Q 016989 31 IPKPLFPLGG--QPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIME 104 (379)
Q Consensus 31 ~pK~llpi~g--~pli~~~i~~l~~----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~i~~ 104 (379)
.+|+|+++.| +|||+|+++.+.. ++|++..... . ...+..+.. ......|...++..++.....
T Consensus 3 ~dK~ll~~~g~~~~ll~~~~~~l~~~~~~iivv~~~~~~-~--------~~~~~~~i~-d~~~g~gpl~~~~~gl~~~~~ 72 (178)
T PRK00576 3 RDKATLPLPGGTTTLVEHVVGIVGQRCAPVFVMAAPGQP-L--------PELPAPVLR-DELRGLGPLPATGRGLRAAAE 72 (178)
T ss_pred CCCEeeEeCCCCcCHHHHHHHHHhhcCCEEEEECCCCcc-c--------ccCCCCEec-cCCCCCCcHHHHHHHHHHHHh
Confidence 3899999999 9999999999865 6666554321 1 112333322 223345777777766654421
Q ss_pred CCCCeEEEEcCCeee-cC-ChHHHHHHHH
Q 016989 105 DNPSHIFLLNCDVCC-SF-PLPEMLDAHR 131 (379)
Q Consensus 105 ~~~~~~lv~~gD~i~-~~-dl~~~l~~~~ 131 (379)
...++++++.||+++ +. .+..+++.+.
T Consensus 73 ~~~~~~lv~~~DmP~i~~~~i~~L~~~~~ 101 (178)
T PRK00576 73 AGARLAFVCAVDMPYLTVELIDDLARPAA 101 (178)
T ss_pred cCCCEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 123689999999999 43 4677776543
No 241
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=97.91 E-value=0.00034 Score=67.52 Aligned_cols=180 Identities=18% Similarity=0.267 Sum_probs=106.4
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeC-CcchhHHHHHhcCc-----------EEEEcccchHHHHHHHHhhcc
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLG-GQPMVHHPISACKR-----------IYLVGFYEEREFALYVSSISN 74 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~-g~pli~~~i~~l~~-----------iiv~~~~~~~~i~~~l~~~~~ 74 (379)
.++.+|+|||| .||||+- ..||.|+||. |+++++..++++.. ++.+....++...+|++.+ .
T Consensus 55 ~kvavl~LaGG--lGTrlG~---~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~ky-f 128 (420)
T PF01704_consen 55 GKVAVLKLAGG--LGTRLGC---SGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEKY-F 128 (420)
T ss_dssp TCEEEEEEEES--BSGCCTE---SSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHHG-C
T ss_pred CCEEEEEEcCc--ccCccCC---CCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHHh-c
Confidence 46888999999 9999987 8899999995 66888888887764 4445555556688888863 2
Q ss_pred cCCccEEEecCC----------------C----------CCChHHHHHH-----HHHhhccCCCCeEEEEcCCeeecCCh
Q 016989 75 ELRIPVRYLRED----------------K----------PHGSAGALYN-----FRDLIMEDNPSHIFLLNCDVCCSFPL 123 (379)
Q Consensus 75 ~~~~~i~~~~~~----------------~----------~~g~~~al~~-----~~~~i~~~~~~~~lv~~gD~i~~~dl 123 (379)
.++.++.+..|. . +-|.++.... .++.+....-+++.+.+.|++...-=
T Consensus 129 g~~~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~D 208 (420)
T PF01704_consen 129 GLDVDVFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVVD 208 (420)
T ss_dssp GSSCCEEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT-
T ss_pred CCCcceEEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccccC
Confidence 222232221110 0 2256543332 23333333346899999999443222
Q ss_pred HHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCCCc--EEEeeecCCC--------cccceeeeeEEEeCHhhHHH
Q 016989 124 PEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNE--LLHYTEKPET--------FVSDLINCGVYVFTPDIFNA 193 (379)
Q Consensus 124 ~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~~--v~~~~ekp~~--------~~~~~~~~Giy~~~~~~l~~ 193 (379)
..++-.+.++++++.+-+.+... ....-|.+... +|+ +..+.+-|.. ....+.+++..+|+-..++.
T Consensus 209 p~~lG~~~~~~~~~~~evv~Kt~-~dek~Gvl~~~--~G~~~vvEysqip~~~~~~~~~~~~~~~FntnNi~~~l~~l~~ 285 (420)
T PF01704_consen 209 PVFLGYMIEKNADFGMEVVPKTS-PDEKGGVLCRY--DGKLQVVEYSQIPKEHMAEFKDIKGFLLFNTNNIWFSLDFLKR 285 (420)
T ss_dssp HHHHHHHHHTT-SEEEEEEE-CS-TTTSSEEEEEE--TTEEEEEEGGGS-HHGHHHHTSTTTSBEEEEEEEEEEHHHHHH
T ss_pred HHHHHHHHhccchhheeeeecCC-CCCceeEEEEe--CCccEEEEeccCCHHHHHhhhccccceEEEeceeeEEHHHHHH
Confidence 34677777788887666655431 12333555543 454 4455443321 13456688888999777765
Q ss_pred hh
Q 016989 194 IQ 195 (379)
Q Consensus 194 l~ 195 (379)
+.
T Consensus 286 ~~ 287 (420)
T PF01704_consen 286 LL 287 (420)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 242
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=97.90 E-value=4.2e-05 Score=74.97 Aligned_cols=49 Identities=16% Similarity=0.300 Sum_probs=35.1
Q ss_pred EECCCcEECCCCCCCcEEeceEECC----------------C---CEECCCcEEeecccccccccceEECCCcEECCCcE
Q 016989 297 YVHPSAKIHPTAKENAVVTNAIVGW----------------K---SSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVV 357 (379)
Q Consensus 297 ~i~~~~~i~~~~~~~~~i~~s~ig~----------------~---~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~ 357 (379)
+|++++.|+ ++|.|.+|+|.. + +.||++|+|.+ ++|+++|.||++|.
T Consensus 333 vI~~~~~Ig----~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~----------~vI~~~v~Ig~~~~ 398 (436)
T PLN02241 333 VVGLRSRIG----EGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRN----------AIIDKNARIGKNVV 398 (436)
T ss_pred EEcCCCEEC----CCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcc----------eEecCCCEECCCcE
Confidence 444444444 556788666644 2 37888888876 99999999999998
Q ss_pred Ee
Q 016989 358 VT 359 (379)
Q Consensus 358 i~ 359 (379)
|.
T Consensus 399 i~ 400 (436)
T PLN02241 399 II 400 (436)
T ss_pred Ee
Confidence 85
No 243
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=97.77 E-value=2.1e-05 Score=71.23 Aligned_cols=40 Identities=20% Similarity=0.186 Sum_probs=17.7
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT 359 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~ 359 (379)
+|.||+|+.||++|+|.+| ..+++|.|..++.++..+.|.
T Consensus 276 ~C~Ig~~vvIG~r~~i~~g----V~l~~s~il~~~~~~~~s~i~ 315 (371)
T KOG1322|consen 276 NCSIGPNVVIGPRVRIEDG----VRLQDSTILGADYYETHSEIS 315 (371)
T ss_pred ccEECCCceECCCcEecCc----eEEEeeEEEccceechhHHHH
Confidence 4444444444444444443 344444444444444444333
No 244
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=97.71 E-value=0.0017 Score=62.33 Aligned_cols=177 Identities=20% Similarity=0.290 Sum_probs=104.9
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeC-CcchhHHHHHhcCc----------EEEEcccchHHHHHHHHhhccc
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLG-GQPMVHHPISACKR----------IYLVGFYEEREFALYVSSISNE 75 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~-g~pli~~~i~~l~~----------iiv~~~~~~~~i~~~l~~~~~~ 75 (379)
.++.+|.|||| +||||+- .-||.+++|. |+++++.+.+.++. .++-+....+.-..++... ..
T Consensus 104 ~klAvl~LaGG--qGtrlG~---~gPKgl~~V~~gks~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt~~t~s~f~~~-~Y 177 (472)
T COG4284 104 GKLAVLKLAGG--QGTRLGC---DGPKGLFEVKDGKSLFDLQAEQIKYLNRQYNVDVPLYIMTSLNTEETDSYFKSN-DY 177 (472)
T ss_pred CceEEEEecCC--ccccccc---CCCceeEEecCCCcHHHHHHHHHHHHHHHhCCCCCEEEEecCCcHHHHHHHhhh-hh
Confidence 46889999999 9999999 7899999999 99999999998875 3333335443344444321 11
Q ss_pred CCc---cEEEecCC-----------------------CCCChH---HHHHH--HHHhhccCCCCeEEEEcCCeee-cCCh
Q 016989 76 LRI---PVRYLRED-----------------------KPHGSA---GALYN--FRDLIMEDNPSHIFLLNCDVCC-SFPL 123 (379)
Q Consensus 76 ~~~---~i~~~~~~-----------------------~~~g~~---~al~~--~~~~i~~~~~~~~lv~~gD~i~-~~dl 123 (379)
++. .|.+..|+ .+.|.+ .+|.. ..+.+....-+++.|.+.|.+. ..|+
T Consensus 178 ~~~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL~~~vD~ 257 (472)
T COG4284 178 FGLDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNLGATVDL 257 (472)
T ss_pred cCCCHHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEecccccccccCH
Confidence 221 12221110 133444 33333 2333333334689999999954 5555
Q ss_pred HHHHHHHHhcCCceEEEEEEeCCCCCCceeEEE-EeCCCCcEEEeeecCCCc----------ccceee-eeEEEeCHhhH
Q 016989 124 PEMLDAHRNYGGMGTILVIKVSAESASQFGELV-ADPDTNELLHYTEKPETF----------VSDLIN-CGVYVFTPDIF 191 (379)
Q Consensus 124 ~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~-~d~~~~~v~~~~ekp~~~----------~~~~~~-~Giy~~~~~~l 191 (379)
. ++..+...+.+.++=+.... .....-|.+. .+. .-+|+.+.+-|... .....+ .++|+++-..+
T Consensus 258 ~-~lg~~~~~~~e~~~e~t~Kt-~a~ekvG~Lv~~~g-~~rllEysev~~~~~~~~~s~~~~~~~n~Nni~l~~~~~~~l 334 (472)
T COG4284 258 K-FLGFMAETNYEYLMETTDKT-KADEKVGILVTYDG-KLRLLEYSEVPNEHREEFTSDGKLKYFNTNNIWLHLFSVKFL 334 (472)
T ss_pred H-HHHHHHhcCcceeEEEeecc-cccccceEEEEeCC-ceEEEEEecCChhHhhhhccccceeeeccccceeehhHHHHH
Confidence 3 56667777777766554432 2234456655 543 46788887765421 112334 67777775554
Q ss_pred H
Q 016989 192 N 192 (379)
Q Consensus 192 ~ 192 (379)
.
T Consensus 335 ~ 335 (472)
T COG4284 335 K 335 (472)
T ss_pred H
Confidence 3
No 245
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=97.70 E-value=0.0001 Score=65.15 Aligned_cols=87 Identities=18% Similarity=0.201 Sum_probs=46.9
Q ss_pred CCeEEecCeEECCCcEECCCCC--CCcEEe-ceEECCCCEECCCcEEee----cccccccc-cceEECCCcEECCCcEEe
Q 016989 288 KNATIIGDVYVHPSAKIHPTAK--ENAVVT-NAIVGWKSSIGRWSRVQA----EGDFNAKL-GITILGEAVGVEDEVVVT 359 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~--~~~~i~-~s~ig~~~~ig~~~~i~~----~~~~~~~~-~~sii~~~~~i~~~~~i~ 359 (379)
+++++.+..+|-=|+.++.+|- .+++++ .++||+||-||.++.|.+ ..-....| +||.||.++.+.+|+.|.
T Consensus 125 ~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVLep~~a~Pv~IgdncliGAns~~veGV~vG 204 (271)
T COG2171 125 KGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLIGANSEVVEGVIVG 204 (271)
T ss_pred CCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeEEecCCCCCCeEECCccEeccccceEeeeEeC
Confidence 3344444333333444443333 344454 566777777776665542 11111111 337777777777777773
Q ss_pred -ccEECCCceeccccc
Q 016989 360 -NSIVLPNKTLNVSVH 374 (379)
Q Consensus 360 -~~ii~~~~~i~~~~~ 374 (379)
+|+|..|++|+++++
T Consensus 205 dg~VV~aGv~I~~~tk 220 (271)
T COG2171 205 DGCVVAAGVFITQDTK 220 (271)
T ss_pred CCcEEecceEEeCCcc
Confidence 777777777777665
No 246
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=97.68 E-value=0.00088 Score=61.91 Aligned_cols=178 Identities=14% Similarity=0.160 Sum_probs=105.4
Q ss_pred EEEEEecCCCCCCccCCCCCCCCCCCcee---CCcchhHHHHHhcCc--------------EEE-EcccchHHHHHHHHh
Q 016989 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPL---GGQPMVHHPISACKR--------------IYL-VGFYEEREFALYVSS 71 (379)
Q Consensus 10 ~aVIla~G~~~gtRl~~lt~~~pK~llpi---~g~pli~~~i~~l~~--------------iiv-~~~~~~~~i~~~l~~ 71 (379)
.+|+|||| .||||+- ..||.++|+ .|++++++.++++.. .+| +.....+...+|+++
T Consensus 2 a~vllaGG--~GTRLG~---~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~ 76 (315)
T cd06424 2 VFVLVAGG--LGERLGY---SGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEE 76 (315)
T ss_pred EEEEecCC--CccccCC---CCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHH
Confidence 57999999 9999998 889999999 589999999988842 344 444455568888876
Q ss_pred hcccCCcc---EEEecC------------------------CCCCChHHHHHHH-----HHhhccCCCCeEEEEcCCeee
Q 016989 72 ISNELRIP---VRYLRE------------------------DKPHGSAGALYNF-----RDLIMEDNPSHIFLLNCDVCC 119 (379)
Q Consensus 72 ~~~~~~~~---i~~~~~------------------------~~~~g~~~al~~~-----~~~i~~~~~~~~lv~~gD~i~ 119 (379)
. ..+|.+ |.+..| ..+.|.++..... ++.+....-+++.+..-|+++
T Consensus 77 n-~yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L 155 (315)
T cd06424 77 N-NYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNAL 155 (315)
T ss_pred C-CccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhh
Confidence 3 333321 221110 1245666443332 233333334688888889988
Q ss_pred -cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEE-eCCCCc--E--EEeeecCC------------Ccccc----
Q 016989 120 -SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVA-DPDTNE--L--LHYTEKPE------------TFVSD---- 177 (379)
Q Consensus 120 -~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~-d~~~~~--v--~~~~ekp~------------~~~~~---- 177 (379)
......++-.+...++++...+.+. ...+.-|.+.. +..+|+ | +.+.|=+. ...+.
T Consensus 156 ~~~adP~fiG~~~~~~~d~~~k~v~~--~~~E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~~~~~g~~~~~~~~s~f 233 (315)
T cd06424 156 AFKAIPAVLGVSATKSLDMNSLTVPR--KPKEAIGALCKLTKNNGKSMTINVEYNQLDPLLRASGKDDGDVDDKTGFSPF 233 (315)
T ss_pred hhccChhhEEEEecCCCceEeEEEeC--CCCCceeeEEEEecCCCceEEEEEEeecCCHHHHhcCCCCCCcccccccccC
Confidence 3334444555566677765554443 23467787653 211333 3 44443210 00122
Q ss_pred eeeeeEEEeCHhh-HHHhh
Q 016989 178 LINCGVYVFTPDI-FNAIQ 195 (379)
Q Consensus 178 ~~~~Giy~~~~~~-l~~l~ 195 (379)
..+++.++|+-+. .+.+.
T Consensus 234 ~gNi~~~~f~l~~~~~~l~ 252 (315)
T cd06424 234 PGNINQLVFSLGPYMDELE 252 (315)
T ss_pred CCeeeeEEEeHHHHHHHHh
Confidence 5689999999554 34444
No 247
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=97.67 E-value=0.00016 Score=65.36 Aligned_cols=84 Identities=15% Similarity=0.274 Sum_probs=40.5
Q ss_pred CCeEEecCeEECCCc-EECCCCCCCcEEe-ceEECCCCEECCCcEEee----cccccccc-cceEECCCcEECCCcEEe-
Q 016989 288 KNATIIGDVYVHPSA-KIHPTAKENAVVT-NAIVGWKSSIGRWSRVQA----EGDFNAKL-GITILGEAVGVEDEVVVT- 359 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~-~i~~~~~~~~~i~-~s~ig~~~~ig~~~~i~~----~~~~~~~~-~~sii~~~~~i~~~~~i~- 359 (379)
++.+|.++++|..++ .+++..+ ++.|. .++||++|.|++++.|.+ +.-....| ++|.||.+|.| +..|.
T Consensus 170 eGtvVm~~a~VN~nAgtIG~~iI-~g~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~IGe~~~IGagA~I--GI~IGd 246 (319)
T TIGR03535 170 EGTTVMHEGFVNFNAGTLGASMV-EGRISAGVVVGDGSDIGGGASIMGTLSGGGKEVISIGERCLLGANSGL--GISLGD 246 (319)
T ss_pred CCCEEcCCCEEccCceEecCceE-EEEEccCCEECCCCEECCCceecceecCCCcccEEECCCcEECCCCEE--CeEECC
Confidence 445555555555555 3554422 34444 555555555555555221 21111111 22666666666 55663
Q ss_pred ccEECCCceeccccc
Q 016989 360 NSIVLPNKTLNVSVH 374 (379)
Q Consensus 360 ~~ii~~~~~i~~~~~ 374 (379)
+|+|+.|++|-.+.+
T Consensus 247 ~~VVGAGaVVtkgT~ 261 (319)
T TIGR03535 247 DCVVEAGLYVTAGTK 261 (319)
T ss_pred CCEECCCCEEeCCeE
Confidence 666666666655543
No 248
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=97.65 E-value=7.6e-05 Score=44.78 Aligned_cols=32 Identities=28% Similarity=0.384 Sum_probs=19.4
Q ss_pred eEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe
Q 016989 317 AIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT 359 (379)
Q Consensus 317 s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~ 359 (379)
..||++|.||++|.| + ..||++|.|+.|+.|.
T Consensus 2 v~IG~~~~ig~~~~i--g---------i~igd~~~i~~g~~I~ 33 (34)
T PF14602_consen 2 VTIGDNCFIGANSTI--G---------ITIGDGVIIGAGVVIT 33 (34)
T ss_dssp EEE-TTEEE-TT-EE--T---------SEE-TTEEE-TTEEEE
T ss_pred eEECCCEEECccccc--C---------CEEcCCCEECCCCEEc
Confidence 467777777777776 3 7777777777777664
No 249
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=97.60 E-value=0.00048 Score=72.35 Aligned_cols=83 Identities=16% Similarity=0.175 Sum_probs=56.9
Q ss_pred eEEEEcCCeeecCC--hHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEEeCCC-CcEEEeeecCCC--------cccc
Q 016989 109 HIFLLNCDVCCSFP--LPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDT-NELLHYTEKPET--------FVSD 177 (379)
Q Consensus 109 ~~lv~~gD~i~~~d--l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~-~~v~~~~ekp~~--------~~~~ 177 (379)
.++|..||.+..++ +.+ -..++++......+..-.++.|+++.+.+. +++..+..||.. ....
T Consensus 154 g~li~~gDv~~~f~~~~~~------~~~~~~~~~~~~~~~~~~~~HGVfv~~~~~~~~~~~~LqKps~eel~a~~~~~~~ 227 (974)
T PRK13412 154 HTLIASGDVYIRSEQPLQD------IPEADVVCYGLWVDPSLATNHGVFVSSRKSPERLDFMLQKPSLEELGGLSKTHLF 227 (974)
T ss_pred ceEEEecchhhhccccccC------CCccCeEEEEeccChhhccCceEEEeCCCChHHHHHHhcCCCHHHHHhhhcCCeE
Confidence 59999999876332 222 123556666666665678899998887531 577778888852 2355
Q ss_pred eeeeeEEEeCHhhHHHhhcc
Q 016989 178 LINCGVYVFTPDIFNAIQGV 197 (379)
Q Consensus 178 ~~~~Giy~~~~~~l~~l~~~ 197 (379)
+.++|+|+|+.++++.|.+.
T Consensus 228 l~D~g~~~~~~~a~~~L~~~ 247 (974)
T PRK13412 228 LMDIGIWLLSDRAVELLMKR 247 (974)
T ss_pred EEeeeEEEEChHHHHHHHHh
Confidence 78999999998887766543
No 250
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=97.41 E-value=0.00012 Score=58.49 Aligned_cols=81 Identities=20% Similarity=0.206 Sum_probs=47.8
Q ss_pred EEecCeEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEee----cccccccc-----------------------cc
Q 016989 291 TIIGDVYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQA----EGDFNAKL-----------------------GI 343 (379)
Q Consensus 291 ~i~~~~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~----~~~~~~~~-----------------------~~ 343 (379)
.|.+++.|++++.|+|.++--+.-+.-+||.|+.|.+.+.|.+ +.+|+++= ++
T Consensus 22 ~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFeVgc~s~A~kvGd~ 101 (190)
T KOG4042|consen 22 DIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFEVGCKSSAKKVGDR 101 (190)
T ss_pred ccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEEeechhhhhhhcCc
Confidence 4456677777777776665122224678888888888777766 22221111 33
Q ss_pred eEECCCcEECCCcEEe-ccEECCCceecc
Q 016989 344 TILGEAVGVEDEVVVT-NSIVLPNKTLNV 371 (379)
Q Consensus 344 sii~~~~~i~~~~~i~-~~ii~~~~~i~~ 371 (379)
-+|+..|.+|+|+.+. +|+||..+.|..
T Consensus 102 NVieskayvg~gv~vssgC~vGA~c~v~~ 130 (190)
T KOG4042|consen 102 NVIESKAYVGDGVSVSSGCSVGAKCTVFS 130 (190)
T ss_pred ceEeeeeEecCCcEEcCCceeccceEEec
Confidence 4555566666666663 666666666544
No 251
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=97.33 E-value=0.0007 Score=58.40 Aligned_cols=37 Identities=22% Similarity=0.243 Sum_probs=30.6
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEecc
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNS 361 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ 361 (379)
.++||++|.||.++.|..+ +.||+++.||.+++++..
T Consensus 124 ~v~IG~~vwIG~~a~IlpG---------V~IG~gavigagsVVtkd 160 (190)
T COG0110 124 PVTIGEDVWIGAGAVILPG---------VTIGEGAVIGAGSVVTKD 160 (190)
T ss_pred CeEECCCeEEcCccEECCC---------EEECCCcEEeeCCEEeCc
Confidence 6888888888888888888 888888888888888653
No 252
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=97.30 E-value=0.00075 Score=69.76 Aligned_cols=57 Identities=14% Similarity=0.126 Sum_probs=31.8
Q ss_pred eEECCCCEECCCcEEeecccccc--cccceEECCCcEECCCcEE-eccEECCCceecccc
Q 016989 317 AIVGWKSSIGRWSRVQAEGDFNA--KLGITILGEAVGVEDEVVV-TNSIVLPNKTLNVSV 373 (379)
Q Consensus 317 s~ig~~~~ig~~~~i~~~~~~~~--~~~~sii~~~~~i~~~~~i-~~~ii~~~~~i~~~~ 373 (379)
+.||++|.|+++|.|......+. ..++++||++|.||.+|.| .++.||+++.|+.++
T Consensus 617 v~IGd~~~I~~~~~i~~h~~~~~~~~~~~v~IG~~~~IG~~a~V~~g~~IGd~a~Ig~~S 676 (695)
T TIGR02353 617 VTIGDDSTLNEGSVIQTHLFEDRVMKSDTVTIGDGATLGPGAIVLYGVVMGEGSVLGPDS 676 (695)
T ss_pred eEECCCCEECCCCEEEeccccccccccCCeEECCCCEECCCCEECCCCEECCCCEECCCC
Confidence 36666666666666644222111 2334666777777766666 356666666665543
No 253
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=97.28 E-value=0.00052 Score=58.85 Aligned_cols=16 Identities=31% Similarity=0.181 Sum_probs=7.0
Q ss_pred ceEECCCCEECCCcEE
Q 016989 316 NAIVGWKSSIGRWSRV 331 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i 331 (379)
.++||++|.|..++.+
T Consensus 174 TAvvg~~vSilH~Vtl 189 (269)
T KOG4750|consen 174 TAVVGDNVSILHPVTL 189 (269)
T ss_pred eeEeccceeeecceee
Confidence 4444444444444444
No 254
>PLN02830 UDP-sugar pyrophosphorylase
Probab=97.23 E-value=0.0051 Score=62.02 Aligned_cols=143 Identities=15% Similarity=0.170 Sum_probs=91.3
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCcee---CCcchhHHHHHhcCc-----------------EEE-EcccchHHH
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPL---GGQPMVHHPISACKR-----------------IYL-VGFYEEREF 65 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi---~g~pli~~~i~~l~~-----------------iiv-~~~~~~~~i 65 (379)
.++.+|.|||| .||||+- ..||.++|+ .|+++++..++.+.. .+| +.....+..
T Consensus 127 ~kvavllLaGG--lGTRLG~---~~pK~~lpv~~~~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T 201 (615)
T PLN02830 127 GNAAFVLVAGG--LGERLGY---SGIKVALPTETATGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHART 201 (615)
T ss_pred CcEEEEEecCC--cccccCC---CCCCcceecccCCCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHH
Confidence 36788999999 9999997 789999997 489999999988632 344 444444568
Q ss_pred HHHHHhhcccCCc---cEEEecCC------------------------CCCChHHHHHHH-----HHhhccCCCCeEEEE
Q 016989 66 ALYVSSISNELRI---PVRYLRED------------------------KPHGSAGALYNF-----RDLIMEDNPSHIFLL 113 (379)
Q Consensus 66 ~~~l~~~~~~~~~---~i~~~~~~------------------------~~~g~~~al~~~-----~~~i~~~~~~~~lv~ 113 (379)
.+|+.++ ..+|. .|.+..|. .+.|.++..... ++.+....-+++.+.
T Consensus 202 ~~~~~~n-~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~ 280 (615)
T PLN02830 202 LKLLERN-DYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFF 280 (615)
T ss_pred HHHHHHC-CccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEE
Confidence 8888864 33332 12221110 234554333321 333333334689999
Q ss_pred cCCeee-cCChHHHHHHHHhcCCceEEEEEEeCCCCCCceeEEEE
Q 016989 114 NCDVCC-SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVA 157 (379)
Q Consensus 114 ~gD~i~-~~dl~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~ 157 (379)
..|+++ ......++-.+..++.++.+.+.+.. ..+.-|.+..
T Consensus 281 ~vDN~L~~~Adp~flG~~~~~~~d~~~kvv~K~--~~E~vGvi~~ 323 (615)
T PLN02830 281 QDTNGLVFKAIPAALGVSATKGFDMNSLAVPRK--AKEAIGAIAK 323 (615)
T ss_pred eccchhhhcccHHHhHHHHhcCCceEEEEEECC--CCcccceEEE
Confidence 999977 33347778888888888776666542 3455666554
No 255
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=97.22 E-value=0.00065 Score=58.26 Aligned_cols=62 Identities=16% Similarity=0.137 Sum_probs=42.9
Q ss_pred CCeEEecCeEECCCcEECCCCC-----CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEE
Q 016989 288 KNATIIGDVYVHPSAKIHPTAK-----ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV 358 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~-----~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i 358 (379)
.+.+|++.++||.++.+.+++. .++--.+-.||+||.||.++.|-++ ..||+|++|+.|+.|
T Consensus 167 tgvvigeTAvvg~~vSilH~Vtlggtgk~~gdrhP~Igd~vliGaGvtILgn---------V~IGegavIaAGsvV 233 (269)
T KOG4750|consen 167 TGVVIGETAVVGDNVSILHPVTLGGTGKGSGDRHPKIGDNVLIGAGVTILGN---------VTIGEGAVIAAGSVV 233 (269)
T ss_pred cceeecceeEeccceeeecceeeccccccccccCCcccCCeEEccccEEeCC---------eeECCCcEEeccceE
Confidence 4566777777777777777765 2222334478888888888777776 777777777777766
No 256
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=97.21 E-value=0.00094 Score=69.05 Aligned_cols=43 Identities=16% Similarity=0.215 Sum_probs=23.4
Q ss_pred ceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEECCCc
Q 016989 316 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPNK 367 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~~~~ 367 (379)
+++||++|.||++|.|..+ +.||++|.||.++.+. +..+.+++
T Consensus 645 ~v~IG~~~~IG~~a~V~~g---------~~IGd~a~Ig~~SvV~~g~~vp~~s 688 (695)
T TIGR02353 645 TVTIGDGATLGPGAIVLYG---------VVMGEGSVLGPDSLVMKGEEVPAHT 688 (695)
T ss_pred CeEECCCCEECCCCEECCC---------CEECCCCEECCCCEEcCCcccCCCC
Confidence 5666666666666665555 5555655555555542 33444443
No 257
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=97.17 E-value=0.001 Score=57.31 Aligned_cols=76 Identities=14% Similarity=0.227 Sum_probs=56.4
Q ss_pred CCeEEecCeEECCCcEECCCCC-------CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-
Q 016989 288 KNATIIGDVYVHPSAKIHPTAK-------ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT- 359 (379)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~-------~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~- 359 (379)
......++++||+++.+..+++ +++.|...+++.+|+|+.+|.+.++ .+...++.||+++.|+
T Consensus 15 ~~ivv~gdViIG~nS~l~~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gN---------V~ve~dayiGE~~sI~g 85 (277)
T COG4801 15 AIIVVKGDVIIGKNSMLKYGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGN---------VIVENDAYIGEFSSIKG 85 (277)
T ss_pred eeEEEeccEEEcccceeeeeeeeeeEEeccCcEEeeeEEecceeeeeeeEeecc---------EEEcCceEEeccceeee
Confidence 3456678889999888887766 7888888899999999999999887 7777778888888775
Q ss_pred ccEECCCceeccc
Q 016989 360 NSIVLPNKTLNVS 372 (379)
Q Consensus 360 ~~ii~~~~~i~~~ 372 (379)
.-++..+-.||++
T Consensus 86 kl~v~gdLdig~d 98 (277)
T COG4801 86 KLTVIGDLDIGAD 98 (277)
T ss_pred eEEEecccccccc
Confidence 3333333334433
No 258
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=97.09 E-value=0.00037 Score=42.40 Aligned_cols=12 Identities=25% Similarity=0.340 Sum_probs=4.1
Q ss_pred EECCCCEECCCc
Q 016989 318 IVGWKSSIGRWS 329 (379)
Q Consensus 318 ~ig~~~~ig~~~ 329 (379)
.||++|.|+++|
T Consensus 21 ~Ig~~~~I~~~~ 32 (36)
T PF00132_consen 21 VIGDNCVIGPGV 32 (36)
T ss_dssp EE-TTEEEETTE
T ss_pred EECCCCEEcCCC
Confidence 333333333333
No 259
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=97.05 E-value=0.0019 Score=55.72 Aligned_cols=28 Identities=14% Similarity=0.220 Sum_probs=13.5
Q ss_pred eEECCCcEECCCcEEe-ccEECCCceecc
Q 016989 344 TILGEAVGVEDEVVVT-NSIVLPNKTLNV 371 (379)
Q Consensus 344 sii~~~~~i~~~~~i~-~~ii~~~~~i~~ 371 (379)
++||++|-||.+|.|- +..||++++|++
T Consensus 125 v~IG~~vwIG~~a~IlpGV~IG~gaviga 153 (190)
T COG0110 125 VTIGEDVWIGAGAVILPGVTIGEGAVIGA 153 (190)
T ss_pred eEECCCeEEcCccEECCCEEECCCcEEee
Confidence 5555555555555552 334444444433
No 260
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=97.04 E-value=0.00065 Score=53.86 Aligned_cols=63 Identities=21% Similarity=0.327 Sum_probs=37.1
Q ss_pred EECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEECCCceeccc
Q 016989 297 YVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTLNVS 372 (379)
Q Consensus 297 ~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~~~~~i~~~ 372 (379)
-||+.+-|+ ++|+++.+.||+.+.+|.++.|+.+ |+|-+.|.|.+++++- .+.+.|.++++.+
T Consensus 86 hiGdhVFie----E~cVVnAAqIgsyVh~GknaviGrr---------CVlkdCc~ild~tVlPpet~vppy~~~~g~ 149 (184)
T KOG3121|consen 86 HIGDHVFIE----EECVVNAAQIGSYVHLGKNAVIGRR---------CVLKDCCRILDDTVLPPETLVPPYSTIGGN 149 (184)
T ss_pred eecceEEEe----cceEeehhhheeeeEeccceeEcCc---------eEhhhheeccCCcccCcccccCCceEEcCC
Confidence 344444444 2335666666666666666666665 6666666666666663 5566666665543
No 261
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=96.76 E-value=0.0021 Score=51.04 Aligned_cols=18 Identities=22% Similarity=0.043 Sum_probs=11.4
Q ss_pred ceEECCCCEECCCcEEee
Q 016989 316 NAIVGWKSSIGRWSRVQA 333 (379)
Q Consensus 316 ~s~ig~~~~ig~~~~i~~ 333 (379)
+.-||+.++|+++|.+..
T Consensus 84 p~hiGdhVFieE~cVVnA 101 (184)
T KOG3121|consen 84 PVHIGDHVFIEEECVVNA 101 (184)
T ss_pred eeeecceEEEecceEeeh
Confidence 455666666666666655
No 262
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=96.30 E-value=0.0034 Score=50.30 Aligned_cols=37 Identities=16% Similarity=0.105 Sum_probs=22.8
Q ss_pred EeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe
Q 016989 314 VTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT 359 (379)
Q Consensus 314 i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~ 359 (379)
.....+|++-.|+..|.++++ +.+.++|.||.+|.|.
T Consensus 93 s~A~kvGd~NVieskayvg~g---------v~vssgC~vGA~c~v~ 129 (190)
T KOG4042|consen 93 SSAKKVGDRNVIESKAYVGDG---------VSVSSGCSVGAKCTVF 129 (190)
T ss_pred hhhhhhcCcceEeeeeEecCC---------cEEcCCceeccceEEe
Confidence 334456666666666666665 6666666666666664
No 263
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=96.03 E-value=1.3 Score=42.17 Aligned_cols=131 Identities=17% Similarity=0.285 Sum_probs=73.9
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeC-CcchhHHHHHhcC---c--------EEEEcccchHHHHHHHHhhcc
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLG-GQPMVHHPISACK---R--------IYLVGFYEEREFALYVSSISN 74 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~-g~pli~~~i~~l~---~--------iiv~~~~~~~~i~~~l~~~~~ 74 (379)
.++..+=|-|| .|+-|+- ..||.+++|. |.+.++-++.+.. + |+.....-++....+++.+..
T Consensus 102 ~KLavlKLNGG--lGttmGc---~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~ky~~ 176 (498)
T KOG2638|consen 102 NKLAVLKLNGG--LGTTMGC---KGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKKYAG 176 (498)
T ss_pred hheEEEEecCC--cCCcccc---CCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHHhcC
Confidence 45677788999 9999998 8899999996 6677776655544 3 344444433445666655422
Q ss_pred cCCccEEEecC-------------------C-----C-CCChH---HHHHH--HHHhhccCCCCeEEEEcCCeee-cCCh
Q 016989 75 ELRIPVRYLRE-------------------D-----K-PHGSA---GALYN--FRDLIMEDNPSHIFLLNCDVCC-SFPL 123 (379)
Q Consensus 75 ~~~~~i~~~~~-------------------~-----~-~~g~~---~al~~--~~~~i~~~~~~~~lv~~gD~i~-~~dl 123 (379)
..+.+....| + + +-|.+ ++++. .++.+=.+..|+++|.+.|.+. ..||
T Consensus 177 -~kv~i~TF~QS~~PRi~~etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNLGAtvDL 255 (498)
T KOG2638|consen 177 -SKVDIKTFNQSKYPRIDKETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNLGATVDL 255 (498)
T ss_pred -CceeEEEeccccCCccccccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEeccccccceeeH
Confidence 1122211110 0 0 12322 23332 1222222334789999999998 5676
Q ss_pred HHHHHHHHhcCCceEEEEEEe
Q 016989 124 PEMLDAHRNYGGMGTILVIKV 144 (379)
Q Consensus 124 ~~~l~~~~~~~~~~ti~~~~~ 144 (379)
. +++...+.+....|-+++.
T Consensus 256 ~-ILn~~i~~~~ey~MEvTdK 275 (498)
T KOG2638|consen 256 N-ILNHVINNNIEYLMEVTDK 275 (498)
T ss_pred H-HHHHHhcCCCceEEEeccc
Confidence 4 3444444455565555543
No 264
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=95.24 E-value=0.056 Score=46.90 Aligned_cols=65 Identities=20% Similarity=0.242 Sum_probs=38.1
Q ss_pred CeEECCCcEECCCCCCCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe-ccEECCCceecccc
Q 016989 295 DVYVHPSAKIHPTAKENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTLNVSV 373 (379)
Q Consensus 295 ~~~i~~~~~i~~~~~~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~-~~ii~~~~~i~~~~ 373 (379)
.+++.-++.|+ +++.+.-.++|+...+|+++.|.+ .+++.++.|+.+|.+. |.++..+++||+.+
T Consensus 16 ~ivv~gdViIG----~nS~l~~~V~g~~iivge~v~i~G----------diva~diridmw~kv~gNV~ve~dayiGE~~ 81 (277)
T COG4801 16 IIVVKGDVIIG----KNSMLKYGVVGEEIIVGERVRIYG----------DIVAKDIRIDMWCKVTGNVIVENDAYIGEFS 81 (277)
T ss_pred eEEEeccEEEc----ccceeeeeeeeeeEEeccCcEEee----------eEEecceeeeeeeEeeccEEEcCceEEeccc
Confidence 34445556666 345677667777777777777766 5555555555555553 44555555555443
No 265
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=94.82 E-value=0.085 Score=45.53 Aligned_cols=81 Identities=21% Similarity=0.200 Sum_probs=54.2
Q ss_pred cchhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcC
Q 016989 41 QPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNC 115 (379)
Q Consensus 41 ~pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~g 115 (379)
+|||.|+++.+.. ++|++.. + .+.++.. .+++. ++.+.. .|...+++.+.+++..+ .+.++++.|
T Consensus 30 ~~ll~~~l~~l~~~~~~~vvvv~~~-~-~~~~~~~----~~~v~--~i~~~~-~G~~~si~~al~~~~~~-~~~vlv~~~ 99 (195)
T TIGR03552 30 LAMLRDVITALRGAGAGAVLVVSPD-P-ALLEAAR----NLGAP--VLRDPG-PGLNNALNAALAEAREP-GGAVLILMA 99 (195)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCC-H-HHHHHHH----hcCCE--EEecCC-CCHHHHHHHHHHHhhcc-CCeEEEEeC
Confidence 3999999998875 5666553 2 2444432 23343 333333 38999999998876532 246999999
Q ss_pred Ceee--cCChHHHHHHHH
Q 016989 116 DVCC--SFPLPEMLDAHR 131 (379)
Q Consensus 116 D~i~--~~dl~~~l~~~~ 131 (379)
|+++ ..+++++++.+.
T Consensus 100 D~P~l~~~~i~~l~~~~~ 117 (195)
T TIGR03552 100 DLPLLTPRELKRLLAAAT 117 (195)
T ss_pred CCCCCCHHHHHHHHHhcc
Confidence 9998 566888888653
No 266
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=94.60 E-value=0.31 Score=39.81 Aligned_cols=103 Identities=17% Similarity=0.111 Sum_probs=64.4
Q ss_pred ceeCCc-chhHHHHHhcCc-------EEEEcccchHHHHHHHHhhcccCCccEEEecCCCCCChHHHHHHHHHhhccCCC
Q 016989 36 FPLGGQ-PMVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNP 107 (379)
Q Consensus 36 lpi~g~-pli~~~i~~l~~-------iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~i~~~~~ 107 (379)
+|.-|+ ..|..+++.+.+ |+|+-........+.+..... .+..+.++..+...|.+.+...+.+....
T Consensus 4 ip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~-~~~~i~~i~~~~n~g~~~~~n~~~~~a~~--- 79 (169)
T PF00535_consen 4 IPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAE-SDPNIRYIRNPENLGFSAARNRGIKHAKG--- 79 (169)
T ss_dssp EEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHC-CSTTEEEEEHCCCSHHHHHHHHHHHH--S---
T ss_pred EEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccc-cccccccccccccccccccccccccccce---
Confidence 344444 556666665554 555544332234445554332 34567777666666888999999888776
Q ss_pred CeEEEEcCCeeecCC-hHHHHHHHHhcCCceEEEEE
Q 016989 108 SHIFLLNCDVCCSFP-LPEMLDAHRNYGGMGTILVI 142 (379)
Q Consensus 108 ~~~lv~~gD~i~~~d-l~~~l~~~~~~~~~~ti~~~ 142 (379)
++++++..|..+..+ +..+++.+.+.+.++.+...
T Consensus 80 ~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~ 115 (169)
T PF00535_consen 80 EYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSV 115 (169)
T ss_dssp SEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEE
T ss_pred eEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEE
Confidence 489999999999555 89999988886665544433
No 267
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=93.35 E-value=0.71 Score=36.73 Aligned_cols=91 Identities=12% Similarity=0.042 Sum_probs=55.9
Q ss_pred eeCC-cchhHHHHHhcCc-------EEEEcccchHHHHHHHHhhcccCCccEEEecCCCCCChHHHHHHHHHhhccCCCC
Q 016989 37 PLGG-QPMVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPS 108 (379)
Q Consensus 37 pi~g-~pli~~~i~~l~~-------iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~i~~~~~~ 108 (379)
|..| .+++.++++.+.+ ++++.....+...+.+...... ...+.........|.+.++..+.+..+. +
T Consensus 4 ~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~---d 79 (156)
T cd00761 4 PAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKK-DPRVIRVINEENQGLAAARNAGLKAARG---E 79 (156)
T ss_pred eecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhc-CCCeEEEEecCCCChHHHHHHHHHHhcC---C
Confidence 3443 4888888888754 5555444333345555443221 1234444455667889999888887743 5
Q ss_pred eEEEEcCCeeecCC-hHHHHHHHH
Q 016989 109 HIFLLNCDVCCSFP-LPEMLDAHR 131 (379)
Q Consensus 109 ~~lv~~gD~i~~~d-l~~~l~~~~ 131 (379)
.++++.+|.++..+ +..++..+.
T Consensus 80 ~v~~~d~D~~~~~~~~~~~~~~~~ 103 (156)
T cd00761 80 YILFLDADDLLLPDWLERLVAELL 103 (156)
T ss_pred EEEEECCCCccCccHHHHHHHHHh
Confidence 79999999999555 555544443
No 268
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=91.60 E-value=1 Score=43.65 Aligned_cols=42 Identities=31% Similarity=0.640 Sum_probs=35.2
Q ss_pred CceEEEEEecCCCCCCccCCCCCCCCCCCceeC---CcchhHHHHHhcCc
Q 016989 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLG---GQPMVHHPISACKR 53 (379)
Q Consensus 7 ~~~~aVIla~G~~~gtRl~~lt~~~pK~llpi~---g~pli~~~i~~l~~ 53 (379)
.+..++++||| +|||++- ..||.+.|++ |+.++++..+.+..
T Consensus 96 ~~~a~~llaGg--qgtRLg~---~~pkg~~~~G~~~~~slf~~qae~il~ 140 (477)
T KOG2388|consen 96 GKVAVVLLAGG--QGTRLGS---SGPKGCYPIGLPSGKSLFQIQAERILK 140 (477)
T ss_pred CcceEEEeccC--ceeeecc---CCCcceeecCCccccchhhhhHHHHHH
Confidence 46789999999 9999998 8899999998 45688888777653
No 269
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=90.99 E-value=0.38 Score=46.81 Aligned_cols=48 Identities=17% Similarity=0.217 Sum_probs=41.9
Q ss_pred CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEeccEECCCc
Q 016989 310 ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNK 367 (379)
Q Consensus 310 ~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~~~ii~~~~ 367 (379)
+++.|-+|+|..++.+|+++.|.. |.|+.++.||++|.|.++-+....
T Consensus 278 ~~~~VinSil~~~~~vg~~svIe~----------s~l~~~~~IG~~cIisGv~~~~~~ 325 (414)
T PF07959_consen 278 ASSCVINSILEGGVSVGPGSVIEH----------SHLGGPWSIGSNCIISGVDINSWS 325 (414)
T ss_pred CCeeEEEeEecCCceECCCCEEEe----------eecCCCCEECCCCEEECCcccccc
Confidence 345788999999999999999988 999999999999999998655544
No 270
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=89.72 E-value=2.7 Score=35.80 Aligned_cols=94 Identities=12% Similarity=0.076 Sum_probs=57.8
Q ss_pred CceeCCcc---hhHHHHHhcCc-------EEEEcccc-hHHHHHHHHhhcccCCccEEEecCCCCCChHHHHHHHHHhhc
Q 016989 35 LFPLGGQP---MVHHPISACKR-------IYLVGFYE-EREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIM 103 (379)
Q Consensus 35 llpi~g~p---li~~~i~~l~~-------iiv~~~~~-~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~i~ 103 (379)
++|+.++. .|..+++.+.. ++|+-... .....+.+..+..+.+ +.++......|.+.+.-.+....+
T Consensus 3 iip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~~--i~~i~~~~n~G~~~a~N~g~~~a~ 80 (201)
T cd04195 3 LMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLP--LKVVPLEKNRGLGKALNEGLKHCT 80 (201)
T ss_pred EEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHHhcCC--eEEEEcCccccHHHHHHHHHHhcC
Confidence 35666553 67777777754 55543322 3334444444333333 444444445688888888887665
Q ss_pred cCCCCeEEEEcCCeeec-CChHHHHHHHHhc
Q 016989 104 EDNPSHIFLLNCDVCCS-FPLPEMLDAHRNY 133 (379)
Q Consensus 104 ~~~~~~~lv~~gD~i~~-~dl~~~l~~~~~~ 133 (379)
. +.++++.+|.... .-+..+++...+.
T Consensus 81 g---d~i~~lD~Dd~~~~~~l~~~~~~~~~~ 108 (201)
T cd04195 81 Y---DWVARMDTDDISLPDRFEKQLDFIEKN 108 (201)
T ss_pred C---CEEEEeCCccccCcHHHHHHHHHHHhC
Confidence 4 5899999999884 4478888876543
No 271
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=89.31 E-value=4.1 Score=33.11 Aligned_cols=90 Identities=16% Similarity=0.066 Sum_probs=56.1
Q ss_pred eeCCc-chhHHHHHhcCc-------EEEEcccchHHHHHHHHhhcccCCccEEEecCCCCCChHHHHHHHHHhhccCCCC
Q 016989 37 PLGGQ-PMVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPS 108 (379)
Q Consensus 37 pi~g~-pli~~~i~~l~~-------iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~i~~~~~~ 108 (379)
|.-|+ ..+..+++.+.. ++|+-........+.+..... .+.++..+...|.+.++..+.+..+. +
T Consensus 4 ~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~~----~~~~~~~~~~~g~~~a~n~~~~~~~~---~ 76 (166)
T cd04186 4 VNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELFP----EVRLIRNGENLGFGAGNNQGIREAKG---D 76 (166)
T ss_pred EecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhCC----CeEEEecCCCcChHHHhhHHHhhCCC---C
Confidence 44344 666777776654 555544333334444543211 45555555667888899988887743 5
Q ss_pred eEEEEcCCeeecCC-hHHHHHHHHhc
Q 016989 109 HIFLLNCDVCCSFP-LPEMLDAHRNY 133 (379)
Q Consensus 109 ~~lv~~gD~i~~~d-l~~~l~~~~~~ 133 (379)
.++++..|..+..+ +..+++.+.+.
T Consensus 77 ~i~~~D~D~~~~~~~l~~~~~~~~~~ 102 (166)
T cd04186 77 YVLLLNPDTVVEPGALLELLDAAEQD 102 (166)
T ss_pred EEEEECCCcEECccHHHHHHHHHHhC
Confidence 89999999988444 77777765544
No 272
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=88.01 E-value=3.8 Score=33.30 Aligned_cols=95 Identities=14% Similarity=0.102 Sum_probs=53.4
Q ss_pred ceeCCc-chhHHHHHhcCc-------EEEEcccchHHHHHHHHhhcccCCccEEEecCCCCCChHHHHHHHHHhhccCCC
Q 016989 36 FPLGGQ-PMVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNP 107 (379)
Q Consensus 36 lpi~g~-pli~~~i~~l~~-------iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~i~~~~~ 107 (379)
+|.-++ ..|..+|+.+.+ ++|+-........+.+..........+.+.......|.+.+...+++....
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~~~~--- 79 (180)
T cd06423 3 VPAYNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAALYIRRVLVVRDKENGGKAGALNAGLRHAKG--- 79 (180)
T ss_pred ecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhccccceEEEEEecccCCchHHHHHHHHhcCC---
Confidence 344444 455555555543 555543322223333333222211234444455667888888888887743
Q ss_pred CeEEEEcCCeeecC-ChHHHHHHHHhc
Q 016989 108 SHIFLLNCDVCCSF-PLPEMLDAHRNY 133 (379)
Q Consensus 108 ~~~lv~~gD~i~~~-dl~~~l~~~~~~ 133 (379)
++++++.+|..+.. .+..++..+.+.
T Consensus 80 ~~i~~~D~D~~~~~~~l~~~~~~~~~~ 106 (180)
T cd06423 80 DIVVVLDADTILEPDALKRLVVPFFAD 106 (180)
T ss_pred CEEEEECCCCCcChHHHHHHHHHhccC
Confidence 58999999998844 477775655443
No 273
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=87.76 E-value=11 Score=34.27 Aligned_cols=86 Identities=14% Similarity=0.043 Sum_probs=54.3
Q ss_pred hhHHHHHhcCc----EEEEccc--chHHHHHHHHhhcccCCccEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCC
Q 016989 43 MVHHPISACKR----IYLVGFY--EEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCD 116 (379)
Q Consensus 43 li~~~i~~l~~----iiv~~~~--~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD 116 (379)
.|...++.+.+ |+|+-+. ....+.+.+.. ...+.++..+...|-+.+.-.+++.......|++++++.|
T Consensus 9 ~l~~~l~sl~~q~~~iiVVDN~S~~~~~~~~~~~~-----~~~i~~i~~~~N~G~a~a~N~Gi~~a~~~~~d~i~~lD~D 83 (281)
T TIGR01556 9 HLGELITSLPKQVDRIIAVDNSPHSDQPLKNARLR-----GQKIALIHLGDNQGIAGAQNQGLDASFRRGVQGVLLLDQD 83 (281)
T ss_pred HHHHHHHHHHhcCCEEEEEECcCCCcHhHHHHhcc-----CCCeEEEECCCCcchHHHHHHHHHHHHHCCCCEEEEECCC
Confidence 45555555554 5555433 22234443332 1346666666677999999988887643335789999999
Q ss_pred eeecC-ChHHHHHHHHhc
Q 016989 117 VCCSF-PLPEMLDAHRNY 133 (379)
Q Consensus 117 ~i~~~-dl~~~l~~~~~~ 133 (379)
...+. -+..+++...+.
T Consensus 84 ~~~~~~~l~~l~~~~~~~ 101 (281)
T TIGR01556 84 SRPGNAFLAAQWKLLSAE 101 (281)
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 99954 477777766544
No 274
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=86.83 E-value=8.3 Score=34.17 Aligned_cols=99 Identities=14% Similarity=0.147 Sum_probs=58.4
Q ss_pred CCCCCC--CCceeCCc-chhHHHHHhcCc---------EEEEcccchHHHHHHHHhhcccCCccEEEecCCCCCChHHHH
Q 016989 28 SLNIPK--PLFPLGGQ-PMVHHPISACKR---------IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGAL 95 (379)
Q Consensus 28 t~~~pK--~llpi~g~-pli~~~i~~l~~---------iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~al 95 (379)
....|+ -++|..|. ..|...|+.+.. ++|+-....+...+.++..... .+.++......|-+.++
T Consensus 25 ~~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~---~v~~i~~~~~~g~~~a~ 101 (251)
T cd06439 25 PAYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADK---GVKLLRFPERRGKAAAL 101 (251)
T ss_pred CCCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhC---cEEEEEcCCCCChHHHH
Confidence 334444 45566665 445555555432 4554443332334444433222 34444445556888888
Q ss_pred HHHHHhhccCCCCeEEEEcCCeeecCC-hHHHHHHHHh
Q 016989 96 YNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHRN 132 (379)
Q Consensus 96 ~~~~~~i~~~~~~~~lv~~gD~i~~~d-l~~~l~~~~~ 132 (379)
..+.+.... |.++++.+|...+.+ ++.+++....
T Consensus 102 n~gi~~a~~---d~i~~lD~D~~~~~~~l~~l~~~~~~ 136 (251)
T cd06439 102 NRALALATG---EIVVFTDANALLDPDALRLLVRHFAD 136 (251)
T ss_pred HHHHHHcCC---CEEEEEccccCcCHHHHHHHHHHhcC
Confidence 888887764 589999999999544 7888877643
No 275
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=86.33 E-value=7.3 Score=34.59 Aligned_cols=59 Identities=12% Similarity=0.087 Sum_probs=41.4
Q ss_pred cEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee-cCChHHHHHHHHhcCCceEEE
Q 016989 79 PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SFPLPEMLDAHRNYGGMGTIL 140 (379)
Q Consensus 79 ~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~-~~dl~~~l~~~~~~~~~~ti~ 140 (379)
.+..+......|-+.++..+...... +.++++.+|... +..+..+++...+.+++++..
T Consensus 69 ~v~~~~~~~n~G~~~a~n~g~~~a~g---~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 128 (243)
T PLN02726 69 RILLRPRPGKLGLGTAYIHGLKHASG---DFVVIMDADLSHHPKYLPSFIKKQRETGADIVTG 128 (243)
T ss_pred cEEEEecCCCCCHHHHHHHHHHHcCC---CEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEE
Confidence 34444445556888888888776654 589999999988 445888888766666665443
No 276
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=86.33 E-value=27 Score=32.08 Aligned_cols=54 Identities=17% Similarity=0.047 Sum_probs=39.9
Q ss_pred cEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeec-CChHHHHHHHHhcCC
Q 016989 79 PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS-FPLPEMLDAHRNYGG 135 (379)
Q Consensus 79 ~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~-~dl~~~l~~~~~~~~ 135 (379)
.+.++..+...|-+.+.-.++..... ++++++++|.... .-+..+++...+.+.
T Consensus 59 ~v~vi~~~~n~G~~~a~N~g~~~A~g---d~i~fLD~D~~~~~~wL~~ll~~l~~~~~ 113 (299)
T cd02510 59 KVKVLRLKKREGLIRARIAGARAATG---DVLVFLDSHCEVNVGWLEPLLARIAENRK 113 (299)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHccC---CEEEEEeCCcccCccHHHHHHHHHHhCCC
Confidence 45555555667888888888777654 5899999999994 448999988766544
No 277
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=85.74 E-value=4.7 Score=34.79 Aligned_cols=59 Identities=20% Similarity=0.121 Sum_probs=43.0
Q ss_pred EEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee-cCChHHHHHHHHhcCCceEEEE
Q 016989 80 VRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SFPLPEMLDAHRNYGGMGTILV 141 (379)
Q Consensus 80 i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~-~~dl~~~l~~~~~~~~~~ti~~ 141 (379)
+.++......|.+.++..+.+.... +.++++.+|..+ +..+..+++...+.+.++++..
T Consensus 59 i~~i~~~~n~G~~~a~~~g~~~a~g---d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 118 (211)
T cd04188 59 IRVLTLPKNRGKGGAVRAGMLAARG---DYILFADADLATPFEELEKLEEALKTSGYDIAIGS 118 (211)
T ss_pred EEEEEcccCCCcHHHHHHHHHHhcC---CEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence 4555555567889999998887765 589999999988 4558888887555566554443
No 278
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=84.60 E-value=7 Score=33.27 Aligned_cols=97 Identities=15% Similarity=0.115 Sum_probs=62.0
Q ss_pred CcchhHHHHHhcCc-------EEEEcc---cchHHHHHHHHhhcccCCccEEEecCCCCCChHHHHHHHHHhhccCCCCe
Q 016989 40 GQPMVHHPISACKR-------IYLVGF---YEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSH 109 (379)
Q Consensus 40 g~pli~~~i~~l~~-------iiv~~~---~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~ 109 (379)
|-|++-|.+..... ++++-. .......+.++.... +-+|...+-...+|.+.|...+..+...+ .
T Consensus 17 Nlpi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg--~d~i~l~pR~~klGLgtAy~hgl~~a~g~---f 91 (238)
T KOG2978|consen 17 NLPIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIYG--EDNILLKPRTKKLGLGTAYIHGLKHATGD---F 91 (238)
T ss_pred CCeeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHhC--CCcEEEEeccCcccchHHHHhhhhhccCC---e
Confidence 34677777776654 555522 233445555553222 13455555456788888999998887764 6
Q ss_pred EEEEcCCeee-cCChHHHHHHHHhcCCceEEEE
Q 016989 110 IFLLNCDVCC-SFPLPEMLDAHRNYGGMGTILV 141 (379)
Q Consensus 110 ~lv~~gD~i~-~~dl~~~l~~~~~~~~~~ti~~ 141 (379)
++++.+|.-- +.-+.+|++...+.+.+.+..+
T Consensus 92 iviMDaDlsHhPk~ipe~i~lq~~~~~div~GT 124 (238)
T KOG2978|consen 92 IVIMDADLSHHPKFIPEFIRLQKEGNYDIVLGT 124 (238)
T ss_pred EEEEeCccCCCchhHHHHHHHhhccCcceeeee
Confidence 7888899766 5668999998777665665544
No 279
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=84.51 E-value=8.5 Score=34.05 Aligned_cols=60 Identities=8% Similarity=0.026 Sum_probs=41.0
Q ss_pred ccEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCC-hHHHHHHHHhcCCceEEE
Q 016989 78 IPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHRNYGGMGTIL 140 (379)
Q Consensus 78 ~~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~d-l~~~l~~~~~~~~~~ti~ 140 (379)
.++.........|.+.++..+.+..+. |.++++.+|...+.+ +.++++.+.+.+.++.++
T Consensus 59 ~~i~~~~~~~~~G~~~a~n~g~~~a~g---d~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~ 119 (241)
T cd06427 59 FRVVVVPPSQPRTKPKACNYALAFARG---EYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACV 119 (241)
T ss_pred eeEEEecCCCCCchHHHHHHHHHhcCC---CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEE
Confidence 345444444556888899888887554 589999999999544 788888776543444333
No 280
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=84.40 E-value=7.5 Score=33.14 Aligned_cols=88 Identities=19% Similarity=0.209 Sum_probs=52.1
Q ss_pred chhHHHHHhcCc-------EEEEcccchHHHHHHHHhhcccCCccEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEc
Q 016989 42 PMVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLN 114 (379)
Q Consensus 42 pli~~~i~~l~~-------iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~ 114 (379)
..|..+|+.+.+ |+|+-....+...+.+.......+ +.++..+...|.+.++-.+.+.......+.++++.
T Consensus 10 ~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~~~~~--i~~~~~~~n~g~~~~~n~~~~~a~~~~~d~v~~ld 87 (202)
T cd04185 10 DLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLGDLDN--IVYLRLPENLGGAGGFYEGVRRAYELGYDWIWLMD 87 (202)
T ss_pred HHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhcCCCc--eEEEECccccchhhHHHHHHHHHhccCCCEEEEeC
Confidence 456666666643 555544333335555554433322 45555555667777777766654322346899999
Q ss_pred CCeeecCC-hHHHHHHHH
Q 016989 115 CDVCCSFP-LPEMLDAHR 131 (379)
Q Consensus 115 gD~i~~~d-l~~~l~~~~ 131 (379)
.|..++.+ +..+++...
T Consensus 88 ~D~~~~~~~l~~l~~~~~ 105 (202)
T cd04185 88 DDAIPDPDALEKLLAYAD 105 (202)
T ss_pred CCCCcChHHHHHHHHHHh
Confidence 99999554 666666554
No 281
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=84.11 E-value=9 Score=33.12 Aligned_cols=57 Identities=21% Similarity=0.219 Sum_probs=40.1
Q ss_pred EEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeec-CChHHHHHHHHhcCCceEE
Q 016989 80 VRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS-FPLPEMLDAHRNYGGMGTI 139 (379)
Q Consensus 80 i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~-~dl~~~l~~~~~~~~~~ti 139 (379)
+.++......|-+.++..+++.... +.++++++|...+ ..+..+++.....+.+++.
T Consensus 55 i~~~~~~~n~G~~~a~n~g~~~a~g---d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~ 112 (224)
T cd06442 55 VRLIVRPGKRGLGSAYIEGFKAARG---DVIVVMDADLSHPPEYIPELLEAQLEGGADLVI 112 (224)
T ss_pred eEEEecCCCCChHHHHHHHHHHcCC---CEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 3444445567888899888887765 5899999998884 4478888875555555433
No 282
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=84.04 E-value=7.8 Score=36.39 Aligned_cols=58 Identities=12% Similarity=0.076 Sum_probs=41.2
Q ss_pred CccEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee-cCChHHHHHHHHhcCCceE
Q 016989 77 RIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SFPLPEMLDAHRNYGGMGT 138 (379)
Q Consensus 77 ~~~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~-~~dl~~~l~~~~~~~~~~t 138 (379)
+.++..+......|.+.|+..+.+..+. |.++++.+|.-. +.++.++++... .+.+++
T Consensus 64 ~~~v~~i~~~~n~G~~~A~~~G~~~A~g---d~vv~~DaD~q~~p~~i~~l~~~~~-~~~DvV 122 (325)
T PRK10714 64 DSHIVAILLNRNYGQHSAIMAGFSHVTG---DLIITLDADLQNPPEEIPRLVAKAD-EGYDVV 122 (325)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHhCCC---CEEEEECCCCCCCHHHHHHHHHHHH-hhCCEE
Confidence 3444443334456888999998877654 589999999998 567899998764 456654
No 283
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=83.12 E-value=8.2 Score=32.99 Aligned_cols=93 Identities=10% Similarity=0.032 Sum_probs=52.8
Q ss_pred eeCCc-chhHHHHHhcCc-------EEEEcccchHHHHHHHHhhcccCCccEEEecCCCCCChHHHHHHHHHhhccCCCC
Q 016989 37 PLGGQ-PMVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPS 108 (379)
Q Consensus 37 pi~g~-pli~~~i~~l~~-------iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~i~~~~~~ 108 (379)
|.-|+ ..|...|+.+.+ |+|+-....+...+.++......+..+.+.......|.+.++..+....+. +
T Consensus 5 p~yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~n~g~~~~~g---~ 81 (214)
T cd04196 5 ATYNGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDPFIIILIRNGKNLGVARNFESLLQAADG---D 81 (214)
T ss_pred EecCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCCceEEEEeCCCCccHHHHHHHHHHhCCC---C
Confidence 34333 355555655543 555533222223333433333333344555556667888888887665543 5
Q ss_pred eEEEEcCCeeec-CChHHHHHHHHh
Q 016989 109 HIFLLNCDVCCS-FPLPEMLDAHRN 132 (379)
Q Consensus 109 ~~lv~~gD~i~~-~dl~~~l~~~~~ 132 (379)
+++++..|..+. ..+..+++...+
T Consensus 82 ~v~~ld~Dd~~~~~~l~~~~~~~~~ 106 (214)
T cd04196 82 YVFFCDQDDIWLPDKLERLLKAFLK 106 (214)
T ss_pred EEEEECCCcccChhHHHHHHHHHhc
Confidence 899999998884 448888886333
No 284
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=81.56 E-value=10 Score=31.60 Aligned_cols=58 Identities=21% Similarity=0.167 Sum_probs=39.8
Q ss_pred cEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeec-CChHHHHHHHHhcCCceEEE
Q 016989 79 PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS-FPLPEMLDAHRNYGGMGTIL 140 (379)
Q Consensus 79 ~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~-~dl~~~l~~~~~~~~~~ti~ 140 (379)
++.++......|.+.++..+...... ++++++.+|...+ ..+..+++. ...+.++++.
T Consensus 56 ~i~~i~~~~n~G~~~a~n~g~~~a~~---d~i~~~D~D~~~~~~~l~~l~~~-~~~~~~~v~g 114 (181)
T cd04187 56 RVKVIRLSRNFGQQAALLAGLDHARG---DAVITMDADLQDPPELIPEMLAK-WEEGYDVVYG 114 (181)
T ss_pred CEEEEEecCCCCcHHHHHHHHHhcCC---CEEEEEeCCCCCCHHHHHHHHHH-HhCCCcEEEE
Confidence 34454444566888899888877654 5899999999984 447888886 4445554443
No 285
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=81.14 E-value=10 Score=31.50 Aligned_cols=58 Identities=16% Similarity=0.146 Sum_probs=41.1
Q ss_pred EEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeec-CChHHHHHHHHhcCCceEEEE
Q 016989 81 RYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS-FPLPEMLDAHRNYGGMGTILV 141 (379)
Q Consensus 81 ~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~-~dl~~~l~~~~~~~~~~ti~~ 141 (379)
.++..+...|-+.++..+.+.... |+++++.+|.... ..+..+++.....+.++.+..
T Consensus 57 ~~~~~~~n~G~~~a~n~g~~~a~g---d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 115 (185)
T cd04179 57 RVIRLSRNFGKGAAVRAGFKAARG---DIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGS 115 (185)
T ss_pred EEEEccCCCCccHHHHHHHHHhcC---CEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence 445555567888888888887765 5899999998884 448888887566565554443
No 286
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=80.98 E-value=8.4 Score=33.76 Aligned_cols=91 Identities=16% Similarity=0.237 Sum_probs=52.9
Q ss_pred ceeCCcc--hhHHHHHhcCc-------EEEEccc-chHH----HHHHHHhhcccCCccEEEecCCCCCC-hHHHHHHHHH
Q 016989 36 FPLGGQP--MVHHPISACKR-------IYLVGFY-EERE----FALYVSSISNELRIPVRYLREDKPHG-SAGALYNFRD 100 (379)
Q Consensus 36 lpi~g~p--li~~~i~~l~~-------iiv~~~~-~~~~----i~~~l~~~~~~~~~~i~~~~~~~~~g-~~~al~~~~~ 100 (379)
+|.-|.+ +|...++.+.+ ++|+-+. .+.. ++++... .+.++.++......| .++++-.+++
T Consensus 4 ip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~----~~~~i~~i~~~~~~G~~~~a~n~g~~ 79 (236)
T cd06435 4 VPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQ----LGERFRFFHVEPLPGAKAGALNYALE 79 (236)
T ss_pred EeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHH----hCCcEEEEEcCCCCCCchHHHHHHHH
Confidence 4566652 67777777754 5555432 2222 2333332 233454444333345 4778888877
Q ss_pred hhccCCCCeEEEEcCCeeecCC-hHHHHHHHH
Q 016989 101 LIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHR 131 (379)
Q Consensus 101 ~i~~~~~~~~lv~~gD~i~~~d-l~~~l~~~~ 131 (379)
..... .|.++++.+|..++.+ +..++....
T Consensus 80 ~a~~~-~d~i~~lD~D~~~~~~~l~~l~~~~~ 110 (236)
T cd06435 80 RTAPD-AEIIAVIDADYQVEPDWLKRLVPIFD 110 (236)
T ss_pred hcCCC-CCEEEEEcCCCCcCHHHHHHHHHHhc
Confidence 76432 3689999999988544 788887654
No 287
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=79.60 E-value=41 Score=29.24 Aligned_cols=85 Identities=14% Similarity=0.144 Sum_probs=49.9
Q ss_pred CCc-chhHHHHHhcCc----EEEEcccchHHHHHHHHhhcccCCccEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEE
Q 016989 39 GGQ-PMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLL 113 (379)
Q Consensus 39 ~g~-pli~~~i~~l~~----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~ 113 (379)
.+. ..|..+|+.+.. |+|+-+..+......... . ..++.++..+...|-+.+...+.+.......++++++
T Consensus 7 n~~~~~l~~~l~sl~~q~~~iivvDn~s~~~~~~~~~~--~--~~~i~~i~~~~n~G~~~a~N~g~~~a~~~~~d~v~~l 82 (237)
T cd02526 7 NPDLSKLKELLAALAEQVDKVVVVDNSSGNDIELRLRL--N--SEKIELIHLGENLGIAKALNIGIKAALENGADYVLLF 82 (237)
T ss_pred cCCHHHHHHHHHHHhccCCEEEEEeCCCCccHHHHhhc--c--CCcEEEEECCCceehHHhhhHHHHHHHhCCCCEEEEE
Confidence 344 566666666654 555533322222222211 1 2345555555567888888888887654234689999
Q ss_pred cCCeeecC-ChHHHH
Q 016989 114 NCDVCCSF-PLPEML 127 (379)
Q Consensus 114 ~gD~i~~~-dl~~~l 127 (379)
.+|...+. .+..++
T Consensus 83 D~D~~~~~~~l~~l~ 97 (237)
T cd02526 83 DQDSVPPPDMVEKLL 97 (237)
T ss_pred CCCCCcCHhHHHHHH
Confidence 99999954 477775
No 288
>PRK11204 N-glycosyltransferase; Provisional
Probab=78.89 E-value=12 Score=36.30 Aligned_cols=96 Identities=13% Similarity=0.082 Sum_probs=57.7
Q ss_pred CceeCCc-chhHHHHHhcCc-------EEEEcccchHHHHHHHHhhcccCCccEEEecCCCCCChHHHHHHHHHhhccCC
Q 016989 35 LFPLGGQ-PMVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDN 106 (379)
Q Consensus 35 llpi~g~-pli~~~i~~l~~-------iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~i~~~~ 106 (379)
++|.-|+ ..|..+++.+.+ |+|+.....+...+.++....+. .++.++......|-+.++..+.+..+.
T Consensus 59 iIp~yne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~-~~v~~i~~~~n~Gka~aln~g~~~a~~-- 135 (420)
T PRK11204 59 LVPCYNEGENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAAQI-PRLRVIHLAENQGKANALNTGAAAARS-- 135 (420)
T ss_pred EEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHHhC-CcEEEEEcCCCCCHHHHHHHHHHHcCC--
Confidence 3455554 667777776654 55554432222333333222221 235555544556888898888877544
Q ss_pred CCeEEEEcCCeeecCC-hHHHHHHHHhcC
Q 016989 107 PSHIFLLNCDVCCSFP-LPEMLDAHRNYG 134 (379)
Q Consensus 107 ~~~~lv~~gD~i~~~d-l~~~l~~~~~~~ 134 (379)
|.++++++|...+.| +..+++.+.+.+
T Consensus 136 -d~i~~lDaD~~~~~d~L~~l~~~~~~~~ 163 (420)
T PRK11204 136 -EYLVCIDGDALLDPDAAAYMVEHFLHNP 163 (420)
T ss_pred -CEEEEECCCCCCChhHHHHHHHHHHhCC
Confidence 589999999988555 788888765443
No 289
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=78.22 E-value=22 Score=30.25 Aligned_cols=35 Identities=11% Similarity=0.075 Sum_probs=23.2
Q ss_pred HHHHHHHHhhccCCCCeEEEEcCCeeecCC-hHHHHHHH
Q 016989 93 GALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAH 130 (379)
Q Consensus 93 ~al~~~~~~i~~~~~~~~lv~~gD~i~~~d-l~~~l~~~ 130 (379)
.++..+.+.... |.++++.+|...+.+ +..+++..
T Consensus 76 ~~~n~g~~~a~~---d~i~~~D~D~~~~~~~l~~l~~~~ 111 (196)
T cd02520 76 NNLIKGYEEARY---DILVISDSDISVPPDYLRRMVAPL 111 (196)
T ss_pred HHHHHHHHhCCC---CEEEEECCCceEChhHHHHHHHHh
Confidence 445455554443 589999999988544 67777653
No 290
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=74.82 E-value=24 Score=29.51 Aligned_cols=85 Identities=13% Similarity=0.066 Sum_probs=50.5
Q ss_pred chhHHHHHhcCc-------EEEEcccchHHHHHHHHhhcccCCccEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEc
Q 016989 42 PMVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLN 114 (379)
Q Consensus 42 pli~~~i~~l~~-------iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~ 114 (379)
..|..+++.+.+ |+|+-....+...+.+...... +.++......|.+.++..+++..+. ++++++.
T Consensus 11 ~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~~~~~~----~~~~~~~~~~g~~~a~n~~~~~a~~---~~v~~ld 83 (202)
T cd06433 11 ETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIKKYEDK----ITYWISEPDKGIYDAMNKGIALATG---DIIGFLN 83 (202)
T ss_pred HHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHHHhHhh----cEEEEecCCcCHHHHHHHHHHHcCC---CEEEEeC
Confidence 456666666643 5555333222244445433221 2222334456888888888887654 5899999
Q ss_pred CCeee-cCChHHHHHHHHhc
Q 016989 115 CDVCC-SFPLPEMLDAHRNY 133 (379)
Q Consensus 115 gD~i~-~~dl~~~l~~~~~~ 133 (379)
+|..+ +..+..+++.....
T Consensus 84 ~D~~~~~~~~~~~~~~~~~~ 103 (202)
T cd06433 84 SDDTLLPGALLAVVAAFAEH 103 (202)
T ss_pred CCcccCchHHHHHHHHHHhC
Confidence 99988 55588887544443
No 291
>PRK10073 putative glycosyl transferase; Provisional
Probab=74.52 E-value=24 Score=33.15 Aligned_cols=56 Identities=11% Similarity=-0.052 Sum_probs=39.0
Q ss_pred EEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeec-CChHHHHHHHHhcCCceEE
Q 016989 80 VRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS-FPLPEMLDAHRNYGGMGTI 139 (379)
Q Consensus 80 i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~-~dl~~~l~~~~~~~~~~ti 139 (379)
+.++.+. ..|.+.+.-.+++.... ++++++.+|..+. .-+..+++...+.+.++++
T Consensus 63 i~vi~~~-n~G~~~arN~gl~~a~g---~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~ 119 (328)
T PRK10073 63 VRLLHQA-NAGVSVARNTGLAVATG---KYVAFPDADDVVYPTMYETLMTMALEDDLDVAQ 119 (328)
T ss_pred EEEEECC-CCChHHHHHHHHHhCCC---CEEEEECCCCccChhHHHHHHHHHHhCCCCEEE
Confidence 4444433 56888888788877665 5899999999884 4478888876665655543
No 292
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=74.40 E-value=11 Score=32.69 Aligned_cols=94 Identities=19% Similarity=0.216 Sum_probs=46.3
Q ss_pred ceeCCc-chhHHHHHhcCc-------EEEEcccchHH----HHHHHHhhcccCCccEEEecCCCCC---ChHHHHHHHHH
Q 016989 36 FPLGGQ-PMVHHPISACKR-------IYLVGFYEERE----FALYVSSISNELRIPVRYLREDKPH---GSAGALYNFRD 100 (379)
Q Consensus 36 lpi~g~-pli~~~i~~l~~-------iiv~~~~~~~~----i~~~l~~~~~~~~~~i~~~~~~~~~---g~~~al~~~~~ 100 (379)
+|..|+ +.+...|+.+.+ |+|+.....+. ++.+.... . +..+.++...... +.+.++..++.
T Consensus 7 ip~~~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~-~--~~~v~vi~~~~~~g~~~k~~a~n~~~~ 83 (228)
T PF13641_consen 7 IPAYNEDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARY-P--RVRVRVIRRPRNPGPGGKARALNEALA 83 (228)
T ss_dssp --BSS-HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTT-G--G-GEEEEE----HHHHHHHHHHHHHHH
T ss_pred EEecCCHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHc-C--CCceEEeecCCCCCcchHHHHHHHHHH
Confidence 455444 667777777764 55544322222 33333221 1 2345554433322 34566777777
Q ss_pred hhccCCCCeEEEEcCCeeecCC-hHHHHHHHHhcCC
Q 016989 101 LIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHRNYGG 135 (379)
Q Consensus 101 ~i~~~~~~~~lv~~gD~i~~~d-l~~~l~~~~~~~~ 135 (379)
..+. +.++++..|...+.+ +..+++.+...+.
T Consensus 84 ~~~~---d~i~~lD~D~~~~p~~l~~~~~~~~~~~~ 116 (228)
T PF13641_consen 84 AARG---DYILFLDDDTVLDPDWLERLLAAFADPGV 116 (228)
T ss_dssp H------SEEEEE-SSEEE-CHHHHHHHHHHHBSS-
T ss_pred hcCC---CEEEEECCCcEECHHHHHHHHHHHHhCCC
Confidence 6653 589999999999544 7888887734443
No 293
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=74.04 E-value=51 Score=27.49 Aligned_cols=51 Identities=18% Similarity=0.176 Sum_probs=35.2
Q ss_pred CCCCChHHHHHHHHHhhc--cCCCCeEEEEcCCeeecCC-hHHHHHHHHhcCCce
Q 016989 86 DKPHGSAGALYNFRDLIM--EDNPSHIFLLNCDVCCSFP-LPEMLDAHRNYGGMG 137 (379)
Q Consensus 86 ~~~~g~~~al~~~~~~i~--~~~~~~~lv~~gD~i~~~d-l~~~l~~~~~~~~~~ 137 (379)
....|.+.++..+..... ....|.++++.+|...+.+ +..+++.+.. +.++
T Consensus 59 ~~~~gk~~aln~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~-~~~~ 112 (183)
T cd06438 59 PERRGKGYALDFGFRHLLNLADDPDAVVVFDADNLVDPNALEELNARFAA-GARV 112 (183)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhh-CCCe
Confidence 445678888888877663 2224689999999999554 7888776654 3443
No 294
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=73.90 E-value=18 Score=35.51 Aligned_cols=97 Identities=13% Similarity=0.036 Sum_probs=55.7
Q ss_pred CCceeCCc-chhHHHHHhcCc-------EEEEcccchHHHHHHHHhhcccCCccEEEecCCCCCChHHHHHHHHHhhccC
Q 016989 34 PLFPLGGQ-PMVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMED 105 (379)
Q Consensus 34 ~llpi~g~-pli~~~i~~l~~-------iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~i~~~ 105 (379)
-++|..|. ..|..+++.+.+ |+|+.....+...+.+.+...+. .++.++......|-+.++..+....+.
T Consensus 79 ViIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~~~-~~v~vv~~~~n~Gka~AlN~gl~~a~~- 156 (444)
T PRK14583 79 ILVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALLAED-PRLRVIHLAHNQGKAIALRMGAAAARS- 156 (444)
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHHHhC-CCEEEEEeCCCCCHHHHHHHHHHhCCC-
Confidence 45677666 556667766643 55554332221222222211111 123344334456788888888776443
Q ss_pred CCCeEEEEcCCeeecCC-hHHHHHHHHhcC
Q 016989 106 NPSHIFLLNCDVCCSFP-LPEMLDAHRNYG 134 (379)
Q Consensus 106 ~~~~~lv~~gD~i~~~d-l~~~l~~~~~~~ 134 (379)
|.++++++|...+.| +..+++.+.+.+
T Consensus 157 --d~iv~lDAD~~~~~d~L~~lv~~~~~~~ 184 (444)
T PRK14583 157 --EYLVCIDGDALLDKNAVPYLVAPLIANP 184 (444)
T ss_pred --CEEEEECCCCCcCHHHHHHHHHHHHhCC
Confidence 689999999999554 777877665443
No 295
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=72.12 E-value=26 Score=30.67 Aligned_cols=79 Identities=11% Similarity=0.017 Sum_probs=45.3
Q ss_pred EEEEcccchHHHHHHHHhhcccCCccEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecC-ChHHHHHHHHh
Q 016989 54 IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSF-PLPEMLDAHRN 132 (379)
Q Consensus 54 iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~-dl~~~l~~~~~ 132 (379)
++|+-+...+...+.+...... ...+.++... ..|-+.++..+++..+. |.++++.+|...+. -+..+++.+.+
T Consensus 34 vivvd~~s~d~~~~~~~~~~~~-~~~v~~i~~~-~~~~~~a~N~g~~~a~~---d~v~~lD~D~~~~~~~l~~~~~~~~~ 108 (249)
T cd02525 34 IIVVDGGSTDGTREIVQEYAAK-DPRIRLIDNP-KRIQSAGLNIGIRNSRG---DIIIRVDAHAVYPKDYILELVEALKR 108 (249)
T ss_pred EEEEeCCCCccHHHHHHHHHhc-CCeEEEEeCC-CCCchHHHHHHHHHhCC---CEEEEECCCccCCHHHHHHHHHHHhc
Confidence 5555333232344444433222 1234444433 34666777777776643 58999999998844 47888876655
Q ss_pred cCCce
Q 016989 133 YGGMG 137 (379)
Q Consensus 133 ~~~~~ 137 (379)
.+.++
T Consensus 109 ~~~~~ 113 (249)
T cd02525 109 TGADN 113 (249)
T ss_pred CCCCE
Confidence 55444
No 296
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=71.66 E-value=20 Score=34.36 Aligned_cols=95 Identities=14% Similarity=0.219 Sum_probs=49.7
Q ss_pred CceeCCc-chhHHHHHhcCc-------EEEEcccchHHHHHHHHhhcccC-CccEEEecCCCCCC---hHHHHHHHHHhh
Q 016989 35 LFPLGGQ-PMVHHPISACKR-------IYLVGFYEEREFALYVSSISNEL-RIPVRYLREDKPHG---SAGALYNFRDLI 102 (379)
Q Consensus 35 llpi~g~-pli~~~i~~l~~-------iiv~~~~~~~~i~~~l~~~~~~~-~~~i~~~~~~~~~g---~~~al~~~~~~i 102 (379)
++|..|. +.|...++.+.. |+++....++.-.+.+++....+ +.++.++..+...| -..++.++.+..
T Consensus 46 iiP~~nee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~~~~G~~~K~~~l~~~~~~a 125 (373)
T TIGR03472 46 LKPLHGDEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDARRHGPNRKVSNLINMLPHA 125 (373)
T ss_pred EEECCCCChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEECCCCCCCChHHHHHHHHHHhc
Confidence 5666655 777777777753 54443322221122222221111 23454443333333 334555444443
Q ss_pred ccCCCCeEEEEcCCeeecCC-hHHHHHHHHh
Q 016989 103 MEDNPSHIFLLNCDVCCSFP-LPEMLDAHRN 132 (379)
Q Consensus 103 ~~~~~~~~lv~~gD~i~~~d-l~~~l~~~~~ 132 (379)
+ .|.++++++|...+.+ ++.++.....
T Consensus 126 ~---ge~i~~~DaD~~~~p~~L~~lv~~~~~ 153 (373)
T TIGR03472 126 R---HDILVIADSDISVGPDYLRQVVAPLAD 153 (373)
T ss_pred c---CCEEEEECCCCCcChhHHHHHHHHhcC
Confidence 3 3689999999988555 7777776543
No 297
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=70.75 E-value=35 Score=29.34 Aligned_cols=45 Identities=13% Similarity=0.003 Sum_probs=31.3
Q ss_pred CCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCC-hHHHHHHHHhcCC
Q 016989 88 PHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHRNYGG 135 (379)
Q Consensus 88 ~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~d-l~~~l~~~~~~~~ 135 (379)
..|.+.++..+.+.... +.++++.+|.....+ +..+++.+.+.+.
T Consensus 67 ~~g~~~a~n~g~~~~~~---d~i~~~D~D~~~~~~~l~~l~~~~~~~~~ 112 (229)
T cd04192 67 ISGKKNALTTAIKAAKG---DWIVTTDADCVVPSNWLLTFVAFIQKEQI 112 (229)
T ss_pred cchhHHHHHHHHHHhcC---CEEEEECCCcccCHHHHHHHHHHhhcCCC
Confidence 45666677777665543 589999999988544 7888876655443
No 298
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=70.63 E-value=44 Score=28.86 Aligned_cols=92 Identities=20% Similarity=0.251 Sum_probs=51.4
Q ss_pred ceeCCc--chhHHHHHhcCc---------EEEEcccchHHHHHHHHhhcccCCccEEEecCC-CCCChHHHHHHHHHhhc
Q 016989 36 FPLGGQ--PMVHHPISACKR---------IYLVGFYEEREFALYVSSISNELRIPVRYLRED-KPHGSAGALYNFRDLIM 103 (379)
Q Consensus 36 lpi~g~--pli~~~i~~l~~---------iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~~~-~~~g~~~al~~~~~~i~ 103 (379)
+|.-|+ .++...++.+.. ++|+-+...+...+.+....... .+.+.... ...+.++++..+++...
T Consensus 7 ip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~n~~~~~a~ 84 (234)
T cd06421 7 IPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELGVEY--GYRYLTRPDNRHAKAGNLNNALAHTT 84 (234)
T ss_pred EecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhhccc--CceEEEeCCCCCCcHHHHHHHHHhCC
Confidence 344443 256666666643 55554443334555555433322 22333222 23344556677776654
Q ss_pred cCCCCeEEEEcCCeeecCC-hHHHHHHHHh
Q 016989 104 EDNPSHIFLLNCDVCCSFP-LPEMLDAHRN 132 (379)
Q Consensus 104 ~~~~~~~lv~~gD~i~~~d-l~~~l~~~~~ 132 (379)
. |.++++..|...+.+ +..+++...+
T Consensus 85 ~---d~i~~lD~D~~~~~~~l~~l~~~~~~ 111 (234)
T cd06421 85 G---DFVAILDADHVPTPDFLRRTLGYFLD 111 (234)
T ss_pred C---CEEEEEccccCcCccHHHHHHHHHhc
Confidence 3 589999999999555 7888876654
No 299
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=70.62 E-value=89 Score=28.82 Aligned_cols=99 Identities=16% Similarity=0.119 Sum_probs=59.7
Q ss_pred eCCcchhHHHHHhcCc-------EEEEcccchHHHHHHHHhhcccCCccEEEecCCCCCChHHHHHHHHHhhccCCCCeE
Q 016989 38 LGGQPMVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHI 110 (379)
Q Consensus 38 i~g~pli~~~i~~l~~-------iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~ 110 (379)
.+...-+...++.+.+ ++++-+.......+.++.. ....+.++..+.-+|-+++.-.+.........+++
T Consensus 12 yn~~~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~~~~~~~~~---~~~~v~~i~~~~NlG~agg~n~g~~~a~~~~~~~~ 88 (305)
T COG1216 12 YNRGEDLVECLASLAAQTYPDDVIVVVDNGSTDGSLEALKAR---FFPNVRLIENGENLGFAGGFNRGIKYALAKGDDYV 88 (305)
T ss_pred cCCHHHHHHHHHHHhcCCCCCcEEEEccCCCCCCCHHHHHhh---cCCcEEEEEcCCCccchhhhhHHHHHHhcCCCcEE
Confidence 3444555556665554 3333333222344444431 12456667667778888888877766544322269
Q ss_pred EEEcCCeeecC-ChHHHHHHHHhcCCceEE
Q 016989 111 FLLNCDVCCSF-PLPEMLDAHRNYGGMGTI 139 (379)
Q Consensus 111 lv~~gD~i~~~-dl~~~l~~~~~~~~~~ti 139 (379)
++++-|++.+. .+.++++.+.+.+..+.+
T Consensus 89 l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~ 118 (305)
T COG1216 89 LLLNPDTVVEPDLLEELLKAAEEDPAAGVV 118 (305)
T ss_pred EEEcCCeeeChhHHHHHHHHHHhCCCCeEe
Confidence 99999988854 489999988887664433
No 300
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=69.85 E-value=7.5 Score=41.81 Aligned_cols=24 Identities=4% Similarity=-0.133 Sum_probs=15.7
Q ss_pred ceEEEEEcc-cchhhcCCccchhhc
Q 016989 242 KQLYTYETM-DFWEQIKTPGMSLKC 265 (379)
Q Consensus 242 ~~v~~~~~~-~~w~~i~t~~d~~~a 265 (379)
.++...... +.++.+||-..|+..
T Consensus 283 l~~~i~~L~~~~F~H~GTs~E~l~~ 307 (974)
T PRK13412 283 LSVAILPLPGGEFYHYGTSRELISS 307 (974)
T ss_pred cceEEEEcCCceeEEecCcHHHhcC
Confidence 345555543 468888988888754
No 301
>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis. One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.
Probab=68.77 E-value=5.7 Score=34.92 Aligned_cols=103 Identities=21% Similarity=0.219 Sum_probs=49.8
Q ss_pred eEEEEEecCCC-CCCccCCCCCCCCCCCceeCCc-----chhHHHHHhcCc--EEEEcccchHHHHHHHHhhcccCCccE
Q 016989 9 VVAVIMVGGPT-KGTRFRPLSLNIPKPLFPLGGQ-----PMVHHPISACKR--IYLVGFYEEREFALYVSSISNELRIPV 80 (379)
Q Consensus 9 ~~aVIla~G~~-~gtRl~~lt~~~pK~llpi~g~-----pli~~~i~~l~~--iiv~~~~~~~~i~~~l~~~~~~~~~~i 80 (379)
|.+||+.-... .=|||.+ .|+-..+ -|+..++..+.. ++|++.... +..+. ...+|..+
T Consensus 1 m~~VIPvK~~~~aKSRLs~--------~L~~~eR~~La~aMl~Dvl~al~~v~v~vVs~d~~--v~~~a---~~~~g~~v 67 (217)
T PF01983_consen 1 MRAVIPVKPLARAKSRLSP--------VLSPEEREALALAMLRDVLAALRAVDVVVVSRDPE--VAALA---RARLGAEV 67 (217)
T ss_dssp -EEEEE---TT-TTGGGTT--------TS-HHHHHHHHHHHHHHHHHHHHH-SEEEEES--S---TTTT---T---SSEE
T ss_pred CeEEEEcCCCCccccccCc--------cCCHHHHHHHHHHHHHHHHHHHHhcCeEEeccchh--hhhhh---hhccCCeE
Confidence 57888875511 2377777 2222223 677888888876 666665432 11111 11344544
Q ss_pred EEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee--cCChHHHHHHH
Q 016989 81 RYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAH 130 (379)
Q Consensus 81 ~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~--~~dl~~~l~~~ 130 (379)
+.++ ..|.-.++..+..... .+.++++++|.++ ..++..+++..
T Consensus 68 --l~d~-~~gLN~Al~~a~~~~~---~~~vlvl~aDLPll~~~dl~~~l~~~ 113 (217)
T PF01983_consen 68 --LPDP-GRGLNAALNAALAAAG---DDPVLVLPADLPLLTPEDLDALLAAA 113 (217)
T ss_dssp --EE----S-HHHHHHHHHH-H-----S-EEEE-S--TT--HHHHHHHCT-S
T ss_pred --ecCC-CCCHHHHHHHHHhccC---CCceEEeecCCccCCHHHHHHHHhcc
Confidence 3333 4577778887733222 2469999999999 67888888753
No 302
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=66.98 E-value=69 Score=28.24 Aligned_cols=107 Identities=14% Similarity=0.175 Sum_probs=63.2
Q ss_pred EEEEEecCCCCCCccCCCCCCCCCCCceeCCcchhHHHHHhcCc---EEEEcccchHHHHHHHHhhcccCCccEEEecCC
Q 016989 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR---IYLVGFYEEREFALYVSSISNELRIPVRYLRED 86 (379)
Q Consensus 10 ~aVIla~G~~~gtRl~~lt~~~pK~llpi~g~pli~~~i~~l~~---iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~~~ 86 (379)
..++||.| .-..|.. .++ -+.-..+|...+..+.. +-|++...++ +.....+ ...++.++.+....
T Consensus 90 ~illlCTG--~F~~l~~-----~~~--lleP~ril~~lV~al~~~~~vGVivP~~eQ-~~~~~~k-W~~l~~~~~~a~as 158 (221)
T PF07302_consen 90 VILLLCTG--EFPGLTA-----RNP--LLEPDRILPPLVAALVGGHQVGVIVPLPEQ-IAQQAEK-WQPLGNPVVVAAAS 158 (221)
T ss_pred EEEEeccC--CCCCCCC-----Ccc--eeehHHhHHHHHHHhcCCCeEEEEecCHHH-HHHHHHH-HHhcCCCeEEEEeC
Confidence 45777888 4334444 333 34456788888888876 6666665543 3332322 22345566665544
Q ss_pred CCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHH
Q 016989 87 KPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDA 129 (379)
Q Consensus 87 ~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~ 129 (379)
-+.|+.+.+..|...+.+... +++++.|=-+. ...+++++.
T Consensus 159 Py~~~~~~l~~Aa~~L~~~ga-dlIvLDCmGYt-~~~r~~~~~ 199 (221)
T PF07302_consen 159 PYEGDEEELAAAARELAEQGA-DLIVLDCMGYT-QEMRDIVQR 199 (221)
T ss_pred CCCCCHHHHHHHHHHHHhcCC-CEEEEECCCCC-HHHHHHHHH
Confidence 444888899988888874422 58888775554 334444443
No 303
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=66.31 E-value=52 Score=27.65 Aligned_cols=49 Identities=18% Similarity=0.171 Sum_probs=35.3
Q ss_pred EEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCC-hHHHHHHHH
Q 016989 80 VRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHR 131 (379)
Q Consensus 80 i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~d-l~~~l~~~~ 131 (379)
+.+.......|.+.++-.+.+.... +.++++.+|..+..+ +..+++.+.
T Consensus 60 ~~~~~~~~~~g~~~a~n~g~~~a~~---d~i~~ld~D~~~~~~~l~~~~~~~~ 109 (202)
T cd04184 60 IKVVFREENGGISAATNSALELATG---EFVALLDHDDELAPHALYEVVKALN 109 (202)
T ss_pred EEEEEcccCCCHHHHHHHHHHhhcC---CEEEEECCCCcCChHHHHHHHHHHH
Confidence 4444445556888888888777654 589999999988544 788888763
No 304
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=65.18 E-value=37 Score=28.04 Aligned_cols=86 Identities=8% Similarity=0.099 Sum_probs=46.8
Q ss_pred chhHHHHHhcCc-------EEEEcccchHHHHHHHHhhcccCCccEEEec-CCCCCChHHHHHHHHHhhccCCCCeEEEE
Q 016989 42 PMVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRIPVRYLR-EDKPHGSAGALYNFRDLIMEDNPSHIFLL 113 (379)
Q Consensus 42 pli~~~i~~l~~-------iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~-~~~~~g~~~al~~~~~~i~~~~~~~~lv~ 113 (379)
..+..+|+.+.+ ++|+-........+.+.......+.++..+. .+...|.+.+...+.+.... +.++++
T Consensus 10 ~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~a~g---~~i~~l 86 (182)
T cd06420 10 EALELVLKSVLNQSILPFEVIIADDGSTEETKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAIAAAKG---DYLIFI 86 (182)
T ss_pred HHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHHHHHHhhcCCceEEEEcCCcchhHHHHHHHHHHHhcC---CEEEEE
Confidence 445666666643 5555443333334444433222223333332 23334556666667766544 589999
Q ss_pred cCCeeecCC-hHHHHHHH
Q 016989 114 NCDVCCSFP-LPEMLDAH 130 (379)
Q Consensus 114 ~gD~i~~~d-l~~~l~~~ 130 (379)
.+|.....+ +..+++.+
T Consensus 87 D~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 87 DGDCIPHPDFIADHIELA 104 (182)
T ss_pred cCCcccCHHHHHHHHHHh
Confidence 999988544 67776654
No 305
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=64.68 E-value=49 Score=32.45 Aligned_cols=94 Identities=17% Similarity=0.170 Sum_probs=53.6
Q ss_pred ceeCCc-chhHHHHHhcCc---------EEEEcccchHHHHHHHHhhcccC-CccEEEecCCCCCChHHHHHHHHHhhcc
Q 016989 36 FPLGGQ-PMVHHPISACKR---------IYLVGFYEEREFALYVSSISNEL-RIPVRYLREDKPHGSAGALYNFRDLIME 104 (379)
Q Consensus 36 lpi~g~-pli~~~i~~l~~---------iiv~~~~~~~~i~~~l~~~~~~~-~~~i~~~~~~~~~g~~~al~~~~~~i~~ 104 (379)
+|.-|. ..|..+++.+.+ |+|+-+...+.-.+.++...... ++.+... +...|-+.++-.+.+....
T Consensus 55 IP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~~~~~~v~v~~~--~~~~Gka~AlN~gl~~s~g 132 (439)
T TIGR03111 55 IPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQNEFPGLSLRYM--NSDQGKAKALNAAIYNSIG 132 (439)
T ss_pred EEeCCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHHHhCCCeEEEEe--CCCCCHHHHHHHHHHHccC
Confidence 344443 666666666643 44443322222233333222211 2333333 2346888899988887654
Q ss_pred CCCCeEEEEcCCeeecCC-hHHHHHHHHhcC
Q 016989 105 DNPSHIFLLNCDVCCSFP-LPEMLDAHRNYG 134 (379)
Q Consensus 105 ~~~~~~lv~~gD~i~~~d-l~~~l~~~~~~~ 134 (379)
+.++++++|...+.| +..+++.+.+.+
T Consensus 133 ---~~v~~~DaD~~~~~d~L~~l~~~f~~~~ 160 (439)
T TIGR03111 133 ---KYIIHIDSDGKLHKDAIKNMVTRFENNP 160 (439)
T ss_pred ---CEEEEECCCCCcChHHHHHHHHHHHhCC
Confidence 589999999999554 788888765443
No 306
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=64.11 E-value=33 Score=33.27 Aligned_cols=97 Identities=19% Similarity=0.208 Sum_probs=62.0
Q ss_pred CceeCCc-c-hhHHHHHhcCc-------EEEEcccchHHHHHHHHhhcccCCccEEEec-CCCCCChHHHHHHHHHhhcc
Q 016989 35 LFPLGGQ-P-MVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRIPVRYLR-EDKPHGSAGALYNFRDLIME 104 (379)
Q Consensus 35 llpi~g~-p-li~~~i~~l~~-------iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~-~~~~~g~~~al~~~~~~i~~ 104 (379)
++|.-|. + .++.+++.+.+ |+++.....+...+.+.+...+++..+.... .....|.+.++..+....+.
T Consensus 59 iiP~ynE~~~~~~~~l~s~~~~dyp~~evivv~d~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~gK~~al~~~l~~~~~ 138 (439)
T COG1215 59 IIPAYNEEPEVLEETLESLLSQDYPRYEVIVVDDGSTDETYEILEELGAEYGPNFRVIYPEKKNGGKAGALNNGLKRAKG 138 (439)
T ss_pred EEecCCCchhhHHHHHHHHHhCCCCCceEEEECCCCChhHHHHHHHHHhhcCcceEEEeccccCccchHHHHHHHhhcCC
Confidence 3455555 5 78888888876 6666654444455556554444321222222 23456778888888777653
Q ss_pred CCCCeEEEEcCCeeecCC-hHHHHHHHHhcC
Q 016989 105 DNPSHIFLLNCDVCCSFP-LPEMLDAHRNYG 134 (379)
Q Consensus 105 ~~~~~~lv~~gD~i~~~d-l~~~l~~~~~~~ 134 (379)
|.++++.+|+..+.| +.+++..+...+
T Consensus 139 ---d~V~~~DaD~~~~~d~l~~~~~~f~~~~ 166 (439)
T COG1215 139 ---DVVVILDADTVPEPDALRELVSPFEDPP 166 (439)
T ss_pred ---CEEEEEcCCCCCChhHHHHHHhhhcCCC
Confidence 589999999999555 788888766543
No 307
>PRK10018 putative glycosyl transferase; Provisional
Probab=61.65 E-value=84 Score=28.73 Aligned_cols=63 Identities=16% Similarity=0.176 Sum_probs=42.5
Q ss_pred HHHHHHHhhcccCCccEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee-cCChHHHHHHHHh
Q 016989 64 EFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SFPLPEMLDAHRN 132 (379)
Q Consensus 64 ~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~-~~dl~~~l~~~~~ 132 (379)
.+.++..... ...+.++..+...|.+.+.-.+++.... ++++++.+|..+ +..+..+++...+
T Consensus 49 ~~~~~~~~~~---~~ri~~i~~~~n~G~~~a~N~gi~~a~g---~~I~~lDaDD~~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 49 QLQQYVTALN---DPRITYIHNDINSGACAVRNQAIMLAQG---EYITGIDDDDEWTPNRLSVFLAHKQQ 112 (279)
T ss_pred HHHHHHHHcC---CCCEEEEECCCCCCHHHHHHHHHHHcCC---CEEEEECCCCCCCccHHHHHHHHHHh
Confidence 3455554321 1356666666667888888888777654 589999999988 4457888876544
No 308
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=59.94 E-value=54 Score=28.40 Aligned_cols=84 Identities=18% Similarity=0.154 Sum_probs=48.5
Q ss_pred chhHHHHHhcCc-----EEEEcccchHHHHHHHHhhcccCCccEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCC
Q 016989 42 PMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCD 116 (379)
Q Consensus 42 pli~~~i~~l~~-----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD 116 (379)
+.|..+|+.+.+ |+|+.....+...+.+...... ..+.... ....|-+.++..++...+. |.++++.+|
T Consensus 14 ~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~~~~~--~~~~v~~-~~~~g~~~a~n~g~~~a~~---d~v~~lD~D 87 (235)
T cd06434 14 DVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQTVKY--GGIFVIT-VPHPGKRRALAEGIRHVTT---DIVVLLDSD 87 (235)
T ss_pred HHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHhhccC--CcEEEEe-cCCCChHHHHHHHHHHhCC---CEEEEECCC
Confidence 456666666643 5555443333233333221221 2232332 2345777888777776643 589999999
Q ss_pred eeecCC-hHHHHHHHH
Q 016989 117 VCCSFP-LPEMLDAHR 131 (379)
Q Consensus 117 ~i~~~d-l~~~l~~~~ 131 (379)
..++.+ +..+++.+.
T Consensus 88 ~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 88 TVWPPNALPEMLKPFE 103 (235)
T ss_pred ceeChhHHHHHHHhcc
Confidence 999544 788887665
No 309
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=59.32 E-value=63 Score=30.41 Aligned_cols=60 Identities=15% Similarity=0.009 Sum_probs=40.9
Q ss_pred cEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee-cCChHHHHHHHHh---cCCceEEEE
Q 016989 79 PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SFPLPEMLDAHRN---YGGMGTILV 141 (379)
Q Consensus 79 ~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~-~~dl~~~l~~~~~---~~~~~ti~~ 141 (379)
.+..+......|.+.|+..++..... +.++++.+|... ..++..+++...+ .+.++++..
T Consensus 138 ~i~vi~~~~N~G~~~A~~~Gi~~a~g---d~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~Gs 201 (333)
T PTZ00260 138 DIRLLSLLRNKGKGGAVRIGMLASRG---KYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGS 201 (333)
T ss_pred cEEEEEcCCCCChHHHHHHHHHHccC---CEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEee
Confidence 35555555667899999988876543 589999999988 4557777776543 445554443
No 310
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=58.46 E-value=64 Score=34.61 Aligned_cols=92 Identities=17% Similarity=0.274 Sum_probs=55.9
Q ss_pred CceeCCcc--hhHHHHHhcCc---------EEEEcccchHHHHHHHHhhcccCCccEEEecC-CCCCChHHHHHHHHHhh
Q 016989 35 LFPLGGQP--MVHHPISACKR---------IYLVGFYEEREFALYVSSISNELRIPVRYLRE-DKPHGSAGALYNFRDLI 102 (379)
Q Consensus 35 llpi~g~p--li~~~i~~l~~---------iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~~-~~~~g~~~al~~~~~~i 102 (379)
++|.-|++ ++..++..+.. |+|+-+...+...+..++ ++ +.++.. +...+-++++-.+++..
T Consensus 265 iIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~~la~~----~~--v~yI~R~~n~~gKAGnLN~aL~~a 338 (852)
T PRK11498 265 FVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQE----VG--VKYIARPTHEHAKAGNINNALKYA 338 (852)
T ss_pred EEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHHHHHHHH----CC--cEEEEeCCCCcchHHHHHHHHHhC
Confidence 45667876 46666665432 666644433445555443 33 444432 33446678888888776
Q ss_pred ccCCCCeEEEEcCCeeecCC-hHHHHHHHHhcCC
Q 016989 103 MEDNPSHIFLLNCDVCCSFP-LPEMLDAHRNYGG 135 (379)
Q Consensus 103 ~~~~~~~~lv~~gD~i~~~d-l~~~l~~~~~~~~ 135 (379)
+. |.++++++|++...| ++.++..+.+.+.
T Consensus 339 ~G---EyIavlDAD~ip~pdfL~~~V~~f~~dP~ 369 (852)
T PRK11498 339 KG---EFVAIFDCDHVPTRSFLQMTMGWFLKDKK 369 (852)
T ss_pred CC---CEEEEECCCCCCChHHHHHHHHHHHhCCC
Confidence 54 589999999998555 5767765555433
No 311
>PRK10063 putative glycosyl transferase; Provisional
Probab=55.72 E-value=1.5e+02 Score=26.39 Aligned_cols=48 Identities=13% Similarity=0.158 Sum_probs=32.2
Q ss_pred EEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCChHHHHHHHH
Q 016989 80 VRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHR 131 (379)
Q Consensus 80 i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl~~~l~~~~ 131 (379)
+.++.+. ..|.+.|+-.+++.... ++++++++|.++..+..+++....
T Consensus 60 i~~i~~~-~~G~~~A~N~Gi~~a~g---~~v~~ld~DD~~~~~~~~~~~~~~ 107 (248)
T PRK10063 60 LRFVSEP-DNGIYDAMNKGIAMAQG---RFALFLNSGDIFHQDAANFVRQLK 107 (248)
T ss_pred EEEEECC-CCCHHHHHHHHHHHcCC---CEEEEEeCCcccCcCHHHHHHHHH
Confidence 4455444 34888898888887654 589999988888555444444443
No 312
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=55.25 E-value=1.1e+02 Score=27.82 Aligned_cols=38 Identities=18% Similarity=0.159 Sum_probs=28.7
Q ss_pred CCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCC-hHHHHH
Q 016989 88 PHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLD 128 (379)
Q Consensus 88 ~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~d-l~~~l~ 128 (379)
..|.+.+.-.+....+. +.++++.+|.+.+.+ +..+++
T Consensus 73 ~f~~a~arN~g~~~A~~---d~l~flD~D~i~~~~~i~~~~~ 111 (281)
T PF10111_consen 73 PFSRAKARNIGAKYARG---DYLIFLDADCIPSPDFIEKLLN 111 (281)
T ss_pred CcCHHHHHHHHHHHcCC---CEEEEEcCCeeeCHHHHHHHHH
Confidence 45777777777776654 589999999999554 677777
No 313
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=55.22 E-value=92 Score=29.89 Aligned_cols=49 Identities=14% Similarity=0.024 Sum_probs=34.1
Q ss_pred CChHHHHHHHHHhhccCC--CCeEEEEcCCeeec-CChHHHHHHHHhcCCce
Q 016989 89 HGSAGALYNFRDLIMEDN--PSHIFLLNCDVCCS-FPLPEMLDAHRNYGGMG 137 (379)
Q Consensus 89 ~g~~~al~~~~~~i~~~~--~~~~lv~~gD~i~~-~dl~~~l~~~~~~~~~~ 137 (379)
.|-+.++.++.+...... .|.++++++|...+ ..+.++++...+.+.++
T Consensus 114 ~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~ 165 (384)
T TIGR03469 114 SGKLWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDL 165 (384)
T ss_pred cchHHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCE
Confidence 466667777777665211 36899999999984 44788888776655543
No 314
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=46.56 E-value=1.4e+02 Score=25.62 Aligned_cols=45 Identities=13% Similarity=0.019 Sum_probs=31.2
Q ss_pred CCCChHHHHHHHHHhhccCCCCeEEEEcCCeee-cCChHHHHHHHHhcC
Q 016989 87 KPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SFPLPEMLDAHRNYG 134 (379)
Q Consensus 87 ~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~-~~dl~~~l~~~~~~~ 134 (379)
...|-+.+.-.+.+..+. ++++++.+|... +..+..++....+.+
T Consensus 68 ~~~G~~~a~N~g~~~a~g---d~i~~lD~D~~~~~~~l~~~~~~~~~~~ 113 (219)
T cd06913 68 SPKGVGYAKNQAIAQSSG---RYLCFLDSDDVMMPQRIRLQYEAALQHP 113 (219)
T ss_pred CCccHHHHHHHHHHhcCC---CEEEEECCCccCChhHHHHHHHHHHhCC
Confidence 345777777666665544 589999999988 445777777665544
No 315
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=43.90 E-value=1.9e+02 Score=24.19 Aligned_cols=43 Identities=19% Similarity=0.081 Sum_probs=29.5
Q ss_pred CCChHHHHHHHHHhhccC--------CCCeEEEEcCCeeecCC-hHHHHHHH
Q 016989 88 PHGSAGALYNFRDLIMED--------NPSHIFLLNCDVCCSFP-LPEMLDAH 130 (379)
Q Consensus 88 ~~g~~~al~~~~~~i~~~--------~~~~~lv~~gD~i~~~d-l~~~l~~~ 130 (379)
..|-+.++..++.....+ ..+.++++.+|...+.+ +..+....
T Consensus 63 ~~Gk~~aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~~~ 114 (191)
T cd06436 63 RTGKGDALNAAYDQIRQILIEEGADPERVIIAVIDADGRLDPNALEAVAPYF 114 (191)
T ss_pred CCCHHHHHHHHHHHHhhhccccccCCCccEEEEECCCCCcCHhHHHHHHHhh
Confidence 457888988888776421 12579999999998544 66655433
No 316
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=42.81 E-value=1.7e+02 Score=24.78 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=28.9
Q ss_pred CChHHHHHHHHHhhccCCCCeEEEEcCCeeecCC-hHHHHHHHHhcC
Q 016989 89 HGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHRNYG 134 (379)
Q Consensus 89 ~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~d-l~~~l~~~~~~~ 134 (379)
.|-+.+.-.+.+.... +.+++++.|..+..+ +..++......+
T Consensus 58 ~g~~~a~n~g~~~a~~---~~i~~~D~D~~~~~~~l~~l~~~~~~~~ 101 (221)
T cd02522 58 KGRARQMNAGAAAARG---DWLLFLHADTRLPPDWDAAIIETLRADG 101 (221)
T ss_pred cCHHHHHHHHHHhccC---CEEEEEcCCCCCChhHHHHHHHHhhcCC
Confidence 4666777767766553 589999999988444 677655554433
No 317
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=39.84 E-value=2.5e+02 Score=24.34 Aligned_cols=82 Identities=13% Similarity=-0.005 Sum_probs=46.8
Q ss_pred chhHHHHHhcCc----EEEEcccchHHHHHHHHhhcccCCccEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCe
Q 016989 42 PMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDV 117 (379)
Q Consensus 42 pli~~~i~~l~~----iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~ 117 (379)
..|...|+.+.. |+|+-....+...+.++ .++.++... ...|-+.+.-.+++.... +.++++.+|.
T Consensus 13 ~~l~~~l~sl~~~~~eiivvD~gStD~t~~i~~----~~~~~v~~~---~~~g~~~~~n~~~~~a~~---d~vl~lDaD~ 82 (229)
T cd02511 13 RNIERCLESVKWAVDEIIVVDSGSTDRTVEIAK----EYGAKVYQR---WWDGFGAQRNFALELATN---DWVLSLDADE 82 (229)
T ss_pred HHHHHHHHHHhcccCEEEEEeCCCCccHHHHHH----HcCCEEEEC---CCCChHHHHHHHHHhCCC---CEEEEEeCCc
Confidence 455666665543 55554332222333333 234554333 445777777777776654 4899999999
Q ss_pred eecCC-hHHHHHHHHhc
Q 016989 118 CCSFP-LPEMLDAHRNY 133 (379)
Q Consensus 118 i~~~d-l~~~l~~~~~~ 133 (379)
.++.+ +..+.+...+.
T Consensus 83 ~~~~~~~~~l~~~~~~~ 99 (229)
T cd02511 83 RLTPELADEILALLATD 99 (229)
T ss_pred CcCHHHHHHHHHHHhCC
Confidence 98555 55555554443
No 318
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=39.04 E-value=70 Score=26.18 Aligned_cols=54 Identities=19% Similarity=0.230 Sum_probs=34.7
Q ss_pred eEECCCcEECCCCC------CCcEEeceEECCCCEECCCcEEeecccccccccceEECCCcEECCCcEEe
Q 016989 296 VYVHPSAKIHPTAK------ENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT 359 (379)
Q Consensus 296 ~~i~~~~~i~~~~~------~~~~i~~s~ig~~~~ig~~~~i~~~~~~~~~~~~sii~~~~~i~~~~~i~ 359 (379)
+.|++.++|...+. ++...++......+.|.+.+++.+ -|=+....|.+|+.+.
T Consensus 58 iiv~~~g~V~gei~a~~~iv~G~v~Gni~~a~~Vei~~~g~v~G----------dI~~~~i~v~~Ga~f~ 117 (146)
T COG1664 58 IVVGESGRVEGEIEAEHLIVEGKVEGNILAAERVELYPGGRVIG----------DITTKEITVEEGAIFE 117 (146)
T ss_pred EEECCccEEEEEEEeCEEEEeeEEEEEEEEeeEEEEcCCcEEee----------eecccEEEEccCCEEE
Confidence 56666666655544 443444566667777777777766 5566677778888775
No 319
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=38.90 E-value=1.7e+02 Score=27.09 Aligned_cols=51 Identities=14% Similarity=0.134 Sum_probs=34.1
Q ss_pred CCChHHHHHHHHHhhccCCCCeEEEEcCCee-e-cCChHHHHHHHHh-cCCceEEEE
Q 016989 88 PHGSAGALYNFRDLIMEDNPSHIFLLNCDVC-C-SFPLPEMLDAHRN-YGGMGTILV 141 (379)
Q Consensus 88 ~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i-~-~~dl~~~l~~~~~-~~~~~ti~~ 141 (379)
..|-+.++..+....+ .|.++++.+|.. . +..+..+++.... .+.+++...
T Consensus 100 n~Gkg~A~~~g~~~a~---gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g~ 153 (306)
T PRK13915 100 RPGKGEALWRSLAATT---GDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKAF 153 (306)
T ss_pred CCCHHHHHHHHHHhcC---CCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEE
Confidence 3577777777766543 358999999996 5 4558888887653 344554443
No 320
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=38.85 E-value=1.1e+02 Score=26.61 Aligned_cols=50 Identities=16% Similarity=0.182 Sum_probs=32.2
Q ss_pred CccEEEecCCCCCC-hHHHHHHHHHhhccCCCCeEEEEcCCeeecCC-hHHHHHH
Q 016989 77 RIPVRYLREDKPHG-SAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDA 129 (379)
Q Consensus 77 ~~~i~~~~~~~~~g-~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~d-l~~~l~~ 129 (379)
+.++..+......| .+.++-.+.+..+. ++++++++|...+.+ +..+...
T Consensus 60 ~~~i~~~~~~~~~G~k~~a~n~g~~~a~~---~~i~~~DaD~~~~~~~l~~~~~~ 111 (232)
T cd06437 60 GVNIKHVRRADRTGYKAGALAEGMKVAKG---EYVAIFDADFVPPPDFLQKTPPY 111 (232)
T ss_pred CCceEEEECCCCCCCchHHHHHHHHhCCC---CEEEEEcCCCCCChHHHHHhhhh
Confidence 34555554443445 46677777776644 589999999999554 6664443
No 321
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=37.58 E-value=2.1e+02 Score=30.18 Aligned_cols=52 Identities=17% Similarity=0.180 Sum_probs=34.8
Q ss_pred EEEec-CCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeecCC-hHHHHHHHHhcC
Q 016989 80 VRYLR-EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHRNYG 134 (379)
Q Consensus 80 i~~~~-~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~d-l~~~l~~~~~~~ 134 (379)
+.++. ++...+-++++-.+++..+. |.++++++|++...| +.+++..+.+.+
T Consensus 204 v~yi~r~~n~~~KAgnLN~al~~a~g---d~Il~lDAD~v~~pd~L~~~v~~f~~dp 257 (713)
T TIGR03030 204 VNYITRPRNVHAKAGNINNALKHTDG---ELILIFDADHVPTRDFLQRTVGWFVEDP 257 (713)
T ss_pred cEEEECCCCCCCChHHHHHHHHhcCC---CEEEEECCCCCcChhHHHHHHHHHHhCC
Confidence 44443 23334557788888877654 589999999999655 677777665433
No 322
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=36.44 E-value=2.4e+02 Score=25.30 Aligned_cols=57 Identities=16% Similarity=0.174 Sum_probs=34.5
Q ss_pred CccEEEecCCCCCCh-HHHHHHHHHhhccCCCCeEEEEcCCeeec-CChHHHHHHHHhcC
Q 016989 77 RIPVRYLREDKPHGS-AGALYNFRDLIMEDNPSHIFLLNCDVCCS-FPLPEMLDAHRNYG 134 (379)
Q Consensus 77 ~~~i~~~~~~~~~g~-~~al~~~~~~i~~~~~~~~lv~~gD~i~~-~dl~~~l~~~~~~~ 134 (379)
+..+.+.......|- ++.+..++..... ..+.++++.+|...+ ..+..++..+...+
T Consensus 66 ~~~v~~~~r~~~~g~Kag~l~~~~~~~~~-~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~ 124 (254)
T cd04191 66 QGRIYYRRRRENTGRKAGNIADFCRRWGS-RYDYMVVLDADSLMSGDTIVRLVRRMEANP 124 (254)
T ss_pred CCcEEEEEcCCCCCccHHHHHHHHHHhCC-CCCEEEEEeCCCCCCHHHHHHHHHHHHhCC
Confidence 355666554333333 4455555543321 236899999999995 45888888765443
No 323
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=31.08 E-value=3.6e+02 Score=27.13 Aligned_cols=53 Identities=13% Similarity=0.056 Sum_probs=32.0
Q ss_pred ccEEEecCCCCCChHHHHHHHHHhhc------cCCCCeEEEEcCCeeecCChHHHHHHH
Q 016989 78 IPVRYLREDKPHGSAGALYNFRDLIM------EDNPSHIFLLNCDVCCSFPLPEMLDAH 130 (379)
Q Consensus 78 ~~i~~~~~~~~~g~~~al~~~~~~i~------~~~~~~~lv~~gD~i~~~dl~~~l~~~ 130 (379)
+.+.......+.+-+.+|-.+.+.+. +...|.++++++|...+.+.-+.+..+
T Consensus 124 v~~vv~~~~gp~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd~Lr~~~~~ 182 (504)
T PRK14716 124 VHLVIVPHDGPTSKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHPLELRLYNYL 182 (504)
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCccHHHHHHhh
Confidence 33333333455677888877766541 222368999999999966643344433
No 324
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=30.84 E-value=3.3e+02 Score=23.02 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=17.9
Q ss_pred ccceeeeeEEEeCHhhHHHhhc
Q 016989 175 VSDLINCGVYVFTPDIFNAIQG 196 (379)
Q Consensus 175 ~~~~~~~Giy~~~~~~l~~l~~ 196 (379)
...++.++.|+++.++++.+-.
T Consensus 144 yP~y~~G~~yvls~~~v~~i~~ 165 (195)
T PF01762_consen 144 YPPYCSGGGYVLSSDVVKRIYK 165 (195)
T ss_pred CCCcCCCCeEEecHHHHHHHHH
Confidence 4557789999999999887764
No 325
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=27.73 E-value=96 Score=25.38 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=15.0
Q ss_pred EEeceEECCC-CEECCCcEEeec
Q 016989 313 VVTNAIVGWK-SSIGRWSRVQAE 334 (379)
Q Consensus 313 ~i~~s~ig~~-~~ig~~~~i~~~ 334 (379)
.+...+..++ +.|+...+|.+.
T Consensus 47 ~~~G~v~s~~~iiv~~~g~V~ge 69 (146)
T COG1664 47 TFEGDVHSDGGIVVGESGRVEGE 69 (146)
T ss_pred EEEEEEEeCCCEEECCccEEEEE
Confidence 5665566665 778888887764
No 326
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=27.14 E-value=3.4e+02 Score=25.08 Aligned_cols=85 Identities=16% Similarity=0.144 Sum_probs=52.5
Q ss_pred chhHHHHHhcCc-----------EEEEcccchHHHHHHHHhhcccCCc-cEEEecCCCCCChHHHHHHHHHhhccCCCCe
Q 016989 42 PMVHHPISACKR-----------IYLVGFYEEREFALYVSSISNELRI-PVRYLREDKPHGSAGALYNFRDLIMEDNPSH 109 (379)
Q Consensus 42 pli~~~i~~l~~-----------iiv~~~~~~~~i~~~l~~~~~~~~~-~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~ 109 (379)
-|++-.++.+++ ++|+-....+.-.++.-.++.+++. ++.........|-++|++.+.....++ .
T Consensus 84 ~mldeav~~le~ry~~~~~F~~eiiVvddgs~d~T~~~a~k~s~K~~~d~irV~~l~~nrgKGgAvR~g~l~~rG~---~ 160 (323)
T KOG2977|consen 84 AMLDEAVDYLEKRYLSDKSFTYEIIVVDDGSTDSTVEVALKFSRKLGDDNIRVIKLKKNRGKGGAVRKGMLSSRGQ---K 160 (323)
T ss_pred HHHHHHHHHHHHHhccCCCCceeEEEeCCCCchhHHHHHHHHHHHcCcceEEEeehhccCCCCcceehhhHhccCc---e
Confidence 477888887764 6666554333222322223334443 355555666778889999877766553 6
Q ss_pred EEEEcCCeeec-CChHHHHHH
Q 016989 110 IFLLNCDVCCS-FPLPEMLDA 129 (379)
Q Consensus 110 ~lv~~gD~i~~-~dl~~~l~~ 129 (379)
.++..+|-... .|+..+.+.
T Consensus 161 ilfadAdGaTkf~d~ekLe~a 181 (323)
T KOG2977|consen 161 ILFADADGATKFADLEKLEKA 181 (323)
T ss_pred EEEEcCCCCccCCCHHHHHHH
Confidence 88888998884 456555544
No 327
>PRK10481 hypothetical protein; Provisional
Probab=26.18 E-value=4.6e+02 Score=23.18 Aligned_cols=83 Identities=16% Similarity=0.212 Sum_probs=47.9
Q ss_pred hHHHHHhcCc---EEEEcccchHHHHHHHHhhcccCCccEEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeeec
Q 016989 44 VHHPISACKR---IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS 120 (379)
Q Consensus 44 i~~~i~~l~~---iiv~~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~ 120 (379)
|...+..+.. +-|++.+.++ +.+..++... .|.++.+.......++.+.+..+...+..... +++++.|-.+..
T Consensus 119 i~~lv~Al~~g~riGVitP~~~q-i~~~~~kw~~-~G~~v~~~~aspy~~~~~~l~~aa~~L~~~ga-D~Ivl~C~G~~~ 195 (224)
T PRK10481 119 LPPLVAAIVGGHQVGVIVPVEEQ-LAQQAQKWQV-LQKPPVFALASPYHGSEEELIDAGKELLDQGA-DVIVLDCLGYHQ 195 (224)
T ss_pred HHHHHHHhcCCCeEEEEEeCHHH-HHHHHHHHHh-cCCceeEeecCCCCCCHHHHHHHHHHhhcCCC-CEEEEeCCCcCH
Confidence 3555555554 6666665543 4444443322 36666554433334677778877776754322 588888887764
Q ss_pred CChHHHHHHH
Q 016989 121 FPLPEMLDAH 130 (379)
Q Consensus 121 ~dl~~~l~~~ 130 (379)
...+.++..
T Consensus 196 -~~~~~le~~ 204 (224)
T PRK10481 196 -RHRDLLQKA 204 (224)
T ss_pred -HHHHHHHHH
Confidence 455555543
No 328
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=22.70 E-value=4.2e+02 Score=23.06 Aligned_cols=58 Identities=16% Similarity=0.143 Sum_probs=33.1
Q ss_pred EEEecCCCCCChHHHHHHHHHhhccCCCCeEEEEcCCeee-cCC-hHHHHHHHHhcCCceEEE
Q 016989 80 VRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SFP-LPEMLDAHRNYGGMGTIL 140 (379)
Q Consensus 80 i~~~~~~~~~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~-~~d-l~~~l~~~~~~~~~~ti~ 140 (379)
+.+.......+.+.++-.+++.-+. ++++.+.-|+.+ +.+ +.++++.+.+.+.-..+.
T Consensus 31 i~i~~~~~~~s~~~~yN~a~~~a~~---~ylvflHqDv~i~~~~~l~~il~~~~~~~~~G~iG 90 (217)
T PF13712_consen 31 IEIDNVRNAKSMAAAYNEAMEKAKA---KYLVFLHQDVFIINENWLEDILEIFEEDPNIGMIG 90 (217)
T ss_dssp EEEE-SSS-S-TTTHHHHHGGG--S---SEEEEEETTEE-SSHHHHHHHHHHHHH-TTEEEEE
T ss_pred EEEeccCCCcCHHHHHHHHHHhCCC---CEEEEEeCCeEEcchhHHHHHHHHHhhCCCccEEE
Confidence 4444444446777777777776443 488999999988 556 677777775544433333
No 329
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=22.21 E-value=3e+02 Score=27.61 Aligned_cols=87 Identities=10% Similarity=0.167 Sum_probs=46.5
Q ss_pred CceeCCc--chhHHHHHhcCc-----------EEE-Ecc-cchH---HHHHHHHhhcccC-CccEEEecCC-CCCChHHH
Q 016989 35 LFPLGGQ--PMVHHPISACKR-----------IYL-VGF-YEER---EFALYVSSISNEL-RIPVRYLRED-KPHGSAGA 94 (379)
Q Consensus 35 llpi~g~--pli~~~i~~l~~-----------iiv-~~~-~~~~---~i~~~l~~~~~~~-~~~i~~~~~~-~~~g~~~a 94 (379)
.+|+.|+ .-+.+-|+++.+ ++| ... .+.+ .+.+.+..+..++ +.++.++... +....+.+
T Consensus 252 IvPl~~r~~~~~~~Fl~~~~~~~l~~~~~~~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~i~~~~~~fsr~~~ 331 (499)
T PF05679_consen 252 IVPLSGREADWFRRFLENFEKVCLETDDNVFLTVVLFYDPSDSDSISQIKELLEELERKYPFSRIKWISVKTGEFSRGAA 331 (499)
T ss_pred EEEecCccHHHHHHHHHHHHHHhcccCCceEEEEEEecCcccchhHHHHHHHHHHHHHhCCccceEEEEecCCCccHHHH
Confidence 4788887 555555555543 333 333 1111 2334454443333 3456655544 56677788
Q ss_pred HHHHHHhhccCCCCeEEEEcCCeeecCCh
Q 016989 95 LYNFRDLIMEDNPSHIFLLNCDVCCSFPL 123 (379)
Q Consensus 95 l~~~~~~i~~~~~~~~lv~~gD~i~~~dl 123 (379)
|..+.+.+..+ +-++++.-|+.+..++
T Consensus 332 Ld~g~~~~~~d--~L~f~~Dvd~~f~~~f 358 (499)
T PF05679_consen 332 LDVGAKKFPPD--SLLFFCDVDMVFTSDF 358 (499)
T ss_pred HHhhcccCCCC--cEEEEEeCCcccCHHH
Confidence 88887766543 2455555566664443
No 330
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=20.49 E-value=4.7e+02 Score=22.32 Aligned_cols=16 Identities=19% Similarity=0.582 Sum_probs=12.1
Q ss_pred eEEEEEecCCCCCCccCC
Q 016989 9 VVAVIMVGGPTKGTRFRP 26 (379)
Q Consensus 9 ~~aVIla~G~~~gtRl~~ 26 (379)
++..|||.| .|+-+.+
T Consensus 1 ~riail~sg--~gs~~~~ 16 (190)
T TIGR00639 1 KRIVVLISG--NGSNLQA 16 (190)
T ss_pred CeEEEEEcC--CChhHHH
Confidence 357788888 7887776
No 331
>PF14134 DUF4301: Domain of unknown function (DUF4301)
Probab=20.35 E-value=3.7e+02 Score=26.84 Aligned_cols=91 Identities=21% Similarity=0.273 Sum_probs=50.3
Q ss_pred CCCCCCceeCCc------chhHHHHHhcCc--------EEEEc-ccchHHHHHHHHhhc----ccCCc--cEEEecCCCC
Q 016989 30 NIPKPLFPLGGQ------PMVHHPISACKR--------IYLVG-FYEEREFALYVSSIS----NELRI--PVRYLREDKP 88 (379)
Q Consensus 30 ~~pK~llpi~g~------pli~~~i~~l~~--------iiv~~-~~~~~~i~~~l~~~~----~~~~~--~i~~~~~~~~ 88 (379)
.+||.|||+..- |+=+|..+.+.- +-.+. ..+.+.+.+.+.... ..+++ +|.|..|...
T Consensus 165 ~lPKGLl~FH~Y~~~~rTp~EEHL~Eaa~Ya~~~g~~~lHFTVS~eH~~~F~~~~~~~~~~~e~~~~v~f~IsfS~Qk~s 244 (513)
T PF14134_consen 165 NLPKGLLPFHKYPDGIRTPFEEHLVEAALYAKSNGKANLHFTVSPEHLDLFKKEVEEVKPKYEKKYGVKFEISFSEQKPS 244 (513)
T ss_pred CCCceeeecccCCCCCcCcHHHHHHHHHHHHhcCCeEEEEEeeCHHHHHHHHHHHHHHHHHHHHhhCceEEEEecccCCC
Confidence 589999999633 999999988752 33333 333333555544322 22333 3334332211
Q ss_pred -----------------------CChHHHHHHHHHhhccCCCCeEEEEcCCeeecCCh
Q 016989 89 -----------------------HGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPL 123 (379)
Q Consensus 89 -----------------------~g~~~al~~~~~~i~~~~~~~~lv~~gD~i~~~dl 123 (379)
-|--+||...++.++. |-++|=+-|++.+..+
T Consensus 245 TDTIAv~~dN~pFR~~dG~LlFRPgGHGALieNLN~lda---DiIFIKNIDNVvpd~~ 299 (513)
T PF14134_consen 245 TDTIAVDPDNTPFRNEDGSLLFRPGGHGALIENLNDLDA---DIIFIKNIDNVVPDRL 299 (513)
T ss_pred CCeeEECCCCCccCCCCCCEEeCCCcchHHHhhhccccC---CEEEEeCccccCCccc
Confidence 1223566666666654 3577777888874433
Done!