Query 016990
Match_columns 379
No_of_seqs 147 out of 226
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 04:38:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016990.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016990hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2751 Beclin-like protein [S 100.0 6.4E-81 1.4E-85 622.9 28.3 339 33-374 1-341 (447)
2 PF04111 APG6: Autophagy prote 100.0 2.7E-68 5.7E-73 522.2 19.9 209 168-376 1-210 (314)
3 PF10186 Atg14: UV radiation r 99.3 9.2E-10 2E-14 104.7 23.2 204 166-375 10-234 (302)
4 KOG2751 Beclin-like protein [S 99.0 9.3E-10 2E-14 112.1 7.6 239 103-370 36-302 (447)
5 KOG2896 UV radiation resistanc 98.3 6.2E-05 1.4E-09 76.2 20.1 111 255-376 141-270 (377)
6 KOG0250 DNA repair protein RAD 97.3 0.031 6.6E-07 63.5 20.8 129 218-378 380-510 (1074)
7 COG1579 Zn-ribbon protein, pos 96.9 0.043 9.3E-07 53.3 15.6 29 177-205 11-39 (239)
8 TIGR02169 SMC_prok_A chromosom 96.6 0.08 1.7E-06 59.4 17.4 107 233-344 436-547 (1164)
9 PF04111 APG6: Autophagy prote 96.6 0.051 1.1E-06 54.3 14.2 171 189-365 42-271 (314)
10 PRK03918 chromosome segregatio 96.3 0.24 5.3E-06 54.7 18.5 23 263-285 304-326 (880)
11 PF04156 IncA: IncA protein; 96.3 0.33 7.1E-06 44.2 16.2 98 176-279 88-185 (191)
12 COG1196 Smc Chromosome segrega 96.1 0.12 2.6E-06 59.7 15.3 96 240-343 441-540 (1163)
13 PF04849 HAP1_N: HAP1 N-termin 96.1 0.39 8.5E-06 48.3 17.0 128 176-303 160-306 (306)
14 PHA02562 46 endonuclease subun 96.1 0.18 4E-06 52.7 15.4 13 166-178 283-295 (562)
15 TIGR02169 SMC_prok_A chromosom 96.1 0.39 8.4E-06 54.0 18.8 17 178-194 260-276 (1164)
16 KOG0996 Structural maintenance 95.7 0.38 8.2E-06 55.5 16.7 96 225-336 536-633 (1293)
17 PRK11637 AmiB activator; Provi 95.7 0.27 5.9E-06 50.6 14.3 74 179-258 43-116 (428)
18 COG1579 Zn-ribbon protein, pos 95.6 0.95 2.1E-05 44.1 16.9 88 216-303 95-187 (239)
19 TIGR02168 SMC_prok_B chromosom 95.5 1.2 2.6E-05 49.9 19.4 7 31-37 26-32 (1179)
20 KOG0979 Structural maintenance 95.3 1.1 2.5E-05 51.0 18.4 30 170-200 197-226 (1072)
21 PRK11637 AmiB activator; Provi 95.3 1.1 2.4E-05 46.2 17.1 55 222-276 175-229 (428)
22 PF08317 Spc7: Spc7 kinetochor 95.2 2.1 4.5E-05 42.9 18.4 29 143-171 78-106 (325)
23 PF00261 Tropomyosin: Tropomyo 94.9 1.6 3.4E-05 41.7 16.0 80 222-301 125-204 (237)
24 PF11932 DUF3450: Protein of u 94.9 3.8 8.2E-05 39.3 20.2 60 295-356 161-235 (251)
25 COG4942 Membrane-bound metallo 94.9 0.9 2E-05 47.5 15.1 85 167-261 26-110 (420)
26 PHA02562 46 endonuclease subun 94.9 1.1 2.3E-05 47.0 15.9 25 180-204 185-209 (562)
27 PF07888 CALCOCO1: Calcium bin 94.7 1.7 3.6E-05 47.0 17.0 14 101-114 81-94 (546)
28 KOG0250 DNA repair protein RAD 94.7 1.5 3.3E-05 50.4 17.3 68 218-285 395-462 (1074)
29 PF04156 IncA: IncA protein; 94.7 3.4 7.3E-05 37.6 16.9 66 180-251 85-150 (191)
30 KOG4360 Uncharacterized coiled 94.6 1.8 3.9E-05 46.4 16.5 125 187-314 192-316 (596)
31 PF07888 CALCOCO1: Calcium bin 94.5 2.1 4.5E-05 46.3 17.1 29 274-302 284-312 (546)
32 PF10168 Nup88: Nuclear pore c 94.5 2 4.4E-05 47.8 17.5 169 165-356 529-708 (717)
33 PRK04863 mukB cell division pr 94.5 1.7 3.7E-05 52.0 17.8 38 269-306 393-430 (1486)
34 COG1196 Smc Chromosome segrega 94.4 2.5 5.4E-05 49.2 18.9 53 147-200 152-217 (1163)
35 PRK09039 hypothetical protein; 94.4 2.6 5.7E-05 42.7 17.0 32 341-372 242-273 (343)
36 PRK02224 chromosome segregatio 94.3 2 4.4E-05 47.8 17.3 26 271-296 665-690 (880)
37 PRK02224 chromosome segregatio 94.3 1.4 3.1E-05 48.9 16.0 25 275-299 594-618 (880)
38 TIGR01843 type_I_hlyD type I s 94.2 2.2 4.8E-05 42.5 15.9 21 280-300 246-266 (423)
39 KOG2391 Vacuolar sorting prote 94.2 6.4 0.00014 40.4 18.9 54 190-249 225-278 (365)
40 PF09789 DUF2353: Uncharacteri 94.2 4.4 9.5E-05 41.2 17.9 129 174-303 84-232 (319)
41 PF00261 Tropomyosin: Tropomyo 94.1 5.8 0.00012 37.9 18.2 84 217-300 127-210 (237)
42 COG4026 Uncharacterized protei 94.1 0.33 7.1E-06 47.2 9.1 71 217-287 142-212 (290)
43 PF10146 zf-C4H2: Zinc finger- 94.0 2.8 6.2E-05 40.5 15.6 40 217-256 39-78 (230)
44 PF13851 GAS: Growth-arrest sp 94.0 5.4 0.00012 37.6 17.3 27 177-203 28-54 (201)
45 TIGR02894 DNA_bind_RsfA transc 94.0 1.1 2.4E-05 41.4 11.9 17 177-193 55-71 (161)
46 smart00787 Spc7 Spc7 kinetocho 93.7 7.8 0.00017 39.1 18.6 157 145-301 75-260 (312)
47 TIGR01843 type_I_hlyD type I s 93.7 7 0.00015 39.0 18.3 22 179-200 84-105 (423)
48 KOG0995 Centromere-associated 93.7 4 8.6E-05 44.3 17.2 65 223-287 293-367 (581)
49 KOG0243 Kinesin-like protein [ 93.5 2.5 5.5E-05 48.6 16.1 71 217-287 483-553 (1041)
50 PRK10884 SH3 domain-containing 93.4 1.4 3E-05 41.9 12.1 80 177-265 94-173 (206)
51 PRK04778 septation ring format 93.4 2.7 5.7E-05 45.2 15.5 31 170-200 280-310 (569)
52 PF12718 Tropomyosin_1: Tropom 93.2 6 0.00013 35.5 15.7 65 229-300 78-142 (143)
53 TIGR01000 bacteriocin_acc bact 93.2 3.8 8.2E-05 42.6 16.0 27 178-204 174-200 (457)
54 PRK04863 mukB cell division pr 93.1 2.7 5.8E-05 50.4 16.3 24 178-201 316-339 (1486)
55 PF15285 BH3: Beclin-1 BH3 dom 93.1 0.031 6.6E-07 36.5 0.3 20 143-162 6-25 (25)
56 KOG0999 Microtubule-associated 93.1 3.5 7.6E-05 44.8 15.5 63 219-281 109-185 (772)
57 PF05266 DUF724: Protein of un 93.1 7.3 0.00016 36.7 16.1 57 234-290 127-183 (190)
58 PF08614 ATG16: Autophagy prot 93.1 0.72 1.6E-05 42.8 9.4 22 179-200 77-98 (194)
59 PF10481 CENP-F_N: Cenp-F N-te 93.0 5.5 0.00012 39.9 15.7 113 178-307 20-136 (307)
60 PF15619 Lebercilin: Ciliary p 93.0 6.6 0.00014 37.0 15.7 13 181-193 24-36 (194)
61 COG4985 ABC-type phosphate tra 92.8 3.2 7E-05 40.7 13.6 103 213-342 160-270 (289)
62 PF07926 TPR_MLP1_2: TPR/MLP1/ 92.7 6.4 0.00014 34.5 17.6 69 231-299 59-131 (132)
63 PF06156 DUF972: Protein of un 92.7 0.51 1.1E-05 40.6 7.3 15 304-319 81-95 (107)
64 PF09755 DUF2046: Uncharacteri 92.7 11 0.00023 38.3 17.6 19 178-196 29-47 (310)
65 KOG0994 Extracellular matrix g 92.7 2.9 6.3E-05 48.8 14.9 45 269-313 1263-1307(1758)
66 PF10146 zf-C4H2: Zinc finger- 92.6 6.5 0.00014 38.1 15.5 63 228-290 36-98 (230)
67 KOG0995 Centromere-associated 92.6 11 0.00024 41.0 18.4 30 176-205 259-288 (581)
68 PF05384 DegS: Sensor protein 92.5 8.6 0.00019 35.4 16.4 19 218-236 49-67 (159)
69 TIGR03185 DNA_S_dndD DNA sulfu 92.5 4.8 0.0001 43.8 16.1 63 185-254 184-246 (650)
70 PRK10884 SH3 domain-containing 92.4 3.5 7.6E-05 39.2 13.2 25 279-303 145-169 (206)
71 PF04012 PspA_IM30: PspA/IM30 92.4 9.5 0.00021 35.6 16.5 43 254-296 107-149 (221)
72 PF12325 TMF_TATA_bd: TATA ele 92.4 4.4 9.6E-05 35.6 12.8 31 175-205 15-45 (120)
73 PF08317 Spc7: Spc7 kinetochor 92.3 12 0.00027 37.4 17.6 29 175-203 148-176 (325)
74 KOG0964 Structural maintenance 92.2 6.3 0.00014 45.4 16.6 78 212-289 413-497 (1200)
75 KOG0977 Nuclear envelope prote 92.1 10 0.00022 41.1 17.6 20 181-200 111-130 (546)
76 PRK04778 septation ring format 91.9 6.2 0.00013 42.5 15.9 42 242-283 380-421 (569)
77 PF10473 CENP-F_leu_zip: Leuci 91.7 9.8 0.00021 34.4 16.4 41 218-258 60-100 (140)
78 KOG0999 Microtubule-associated 91.7 7.6 0.00016 42.4 15.9 32 216-247 155-186 (772)
79 PF11559 ADIP: Afadin- and alp 91.7 9.1 0.0002 33.9 16.9 6 295-300 141-146 (151)
80 COG2433 Uncharacterized conser 91.6 3.9 8.5E-05 44.8 13.9 44 216-259 421-464 (652)
81 TIGR02680 conserved hypothetic 91.5 11 0.00023 45.0 18.5 10 150-159 180-189 (1353)
82 TIGR00606 rad50 rad50. This fa 91.5 5.1 0.00011 47.2 15.8 15 311-325 1149-1164(1311)
83 KOG1962 B-cell receptor-associ 91.5 5.1 0.00011 38.7 13.1 17 224-240 158-174 (216)
84 PF00038 Filament: Intermediat 91.5 15 0.00032 35.9 19.5 70 222-294 214-283 (312)
85 PRK01156 chromosome segregatio 91.5 8.4 0.00018 43.2 17.0 34 268-301 411-444 (895)
86 PF12325 TMF_TATA_bd: TATA ele 91.1 10 0.00022 33.4 16.0 37 218-254 24-60 (120)
87 smart00787 Spc7 Spc7 kinetocho 91.1 19 0.00041 36.4 18.6 29 174-202 142-170 (312)
88 PF10498 IFT57: Intra-flagella 90.9 9.7 0.00021 39.2 15.5 77 166-258 217-293 (359)
89 PF09789 DUF2353: Uncharacteri 90.8 19 0.00041 36.7 17.0 167 180-355 13-222 (319)
90 PF13851 GAS: Growth-arrest sp 90.7 15 0.00033 34.6 16.0 23 268-290 109-131 (201)
91 PF10212 TTKRSYEDQ: Predicted 90.6 11 0.00023 40.7 15.8 78 222-302 439-516 (518)
92 TIGR00606 rad50 rad50. This fa 90.6 16 0.00035 43.1 18.8 38 213-250 825-862 (1311)
93 COG2433 Uncharacterized conser 90.5 5.2 0.00011 43.9 13.5 75 219-293 431-508 (652)
94 PF09755 DUF2046: Uncharacteri 90.5 15 0.00033 37.3 16.0 61 228-288 139-200 (310)
95 KOG0804 Cytoplasmic Zn-finger 90.5 17 0.00037 38.7 16.9 8 66-73 182-189 (493)
96 KOG0161 Myosin class II heavy 90.4 17 0.00037 44.9 18.9 12 70-81 658-671 (1930)
97 PF06120 Phage_HK97_TLTM: Tail 90.4 12 0.00026 37.8 15.1 72 180-252 38-109 (301)
98 PF10473 CENP-F_leu_zip: Leuci 90.0 9.8 0.00021 34.4 12.9 22 182-203 9-30 (140)
99 KOG4673 Transcription factor T 89.8 22 0.00047 40.0 17.5 50 155-206 390-439 (961)
100 KOG0971 Microtubule-associated 89.8 45 0.00097 38.7 22.2 26 270-295 329-354 (1243)
101 PF09730 BicD: Microtubule-ass 89.4 19 0.00041 40.4 17.1 74 178-251 36-117 (717)
102 PF09726 Macoilin: Transmembra 89.2 16 0.00035 40.7 16.5 26 232-257 546-571 (697)
103 PF15035 Rootletin: Ciliary ro 89.1 19 0.00042 33.6 15.7 81 176-256 16-113 (182)
104 PF15070 GOLGA2L5: Putative go 89.1 20 0.00044 39.4 17.0 24 336-359 198-221 (617)
105 KOG0161 Myosin class II heavy 88.8 16 0.00034 45.1 17.1 30 237-266 956-985 (1930)
106 PF06005 DUF904: Protein of un 88.8 11 0.00024 30.3 11.6 52 220-271 7-58 (72)
107 COG4942 Membrane-bound metallo 88.7 9.4 0.0002 40.2 13.4 9 293-301 118-126 (420)
108 TIGR03185 DNA_S_dndD DNA sulfu 88.6 37 0.0008 37.1 18.6 41 217-257 428-468 (650)
109 PRK11519 tyrosine kinase; Prov 88.6 44 0.00096 37.1 21.4 34 267-300 364-397 (719)
110 KOG1853 LIS1-interacting prote 88.6 27 0.00058 35.0 15.7 79 224-305 52-133 (333)
111 PF00038 Filament: Intermediat 88.5 26 0.00055 34.2 17.8 15 285-299 122-136 (312)
112 TIGR03752 conj_TIGR03752 integ 88.5 6.8 0.00015 41.8 12.4 76 225-300 67-143 (472)
113 KOG1962 B-cell receptor-associ 88.5 8.2 0.00018 37.3 11.9 37 222-258 149-185 (216)
114 PF14662 CCDC155: Coiled-coil 88.2 24 0.00053 33.6 16.6 33 222-254 79-111 (193)
115 KOG0933 Structural maintenance 88.1 28 0.00062 40.5 17.5 16 72-87 571-586 (1174)
116 KOG0288 WD40 repeat protein Ti 88.1 19 0.0004 38.1 14.9 109 180-288 10-119 (459)
117 PF00769 ERM: Ezrin/radixin/mo 88.1 17 0.00036 35.3 14.0 39 222-260 59-97 (246)
118 KOG2264 Exostosin EXT1L [Signa 88.0 4.8 0.0001 44.0 11.0 70 229-312 91-160 (907)
119 KOG0933 Structural maintenance 87.9 27 0.00059 40.6 17.1 24 267-290 816-839 (1174)
120 PF10168 Nup88: Nuclear pore c 87.9 50 0.0011 37.1 19.2 25 274-298 640-664 (717)
121 TIGR01010 BexC_CtrB_KpsE polys 87.9 32 0.00069 34.5 19.5 126 174-300 168-305 (362)
122 KOG0964 Structural maintenance 87.8 26 0.00056 40.7 16.8 98 223-320 410-528 (1200)
123 PF09726 Macoilin: Transmembra 87.8 36 0.00077 38.1 17.9 29 176-204 418-446 (697)
124 PF06160 EzrA: Septation ring 87.6 23 0.00049 38.3 16.0 180 170-354 276-486 (560)
125 PRK09039 hypothetical protein; 87.6 35 0.00076 34.7 23.4 25 176-200 81-105 (343)
126 PF07106 TBPIP: Tat binding pr 87.6 9.2 0.0002 34.5 11.2 69 170-238 66-137 (169)
127 KOG0804 Cytoplasmic Zn-finger 87.3 25 0.00054 37.5 15.4 16 282-297 430-445 (493)
128 PF10211 Ax_dynein_light: Axon 87.2 26 0.00056 32.8 14.5 65 227-297 123-187 (189)
129 PF10186 Atg14: UV radiation r 87.1 28 0.00061 33.1 18.4 53 303-360 170-223 (302)
130 KOG0980 Actin-binding protein 87.0 29 0.00063 39.8 16.6 9 320-328 563-571 (980)
131 PRK00409 recombination and DNA 87.0 13 0.00029 41.7 14.3 13 20-32 299-311 (782)
132 COG5185 HEC1 Protein involved 86.9 36 0.00079 36.7 16.4 9 192-200 238-246 (622)
133 TIGR01069 mutS2 MutS2 family p 86.8 9.8 0.00021 42.7 13.1 12 21-32 295-306 (771)
134 KOG2072 Translation initiation 86.8 25 0.00054 40.2 15.8 146 152-301 521-698 (988)
135 KOG4438 Centromere-associated 86.7 30 0.00065 36.7 15.6 65 229-293 178-243 (446)
136 KOG0982 Centrosomal protein Nu 86.7 29 0.00064 36.9 15.5 28 275-302 362-389 (502)
137 PF09730 BicD: Microtubule-ass 86.6 33 0.00071 38.6 16.8 24 267-290 122-145 (717)
138 PRK09841 cryptic autophosphory 86.2 60 0.0013 36.1 22.4 126 172-301 263-398 (726)
139 TIGR03007 pepcterm_ChnLen poly 86.1 47 0.001 34.6 21.6 98 267-375 349-465 (498)
140 KOG0977 Nuclear envelope prote 86.1 26 0.00056 38.2 15.2 27 179-205 38-64 (546)
141 PF04849 HAP1_N: HAP1 N-termin 86.0 39 0.00084 34.4 15.6 86 213-298 163-266 (306)
142 PF05278 PEARLI-4: Arabidopsis 86.0 14 0.00031 36.8 12.3 151 144-301 94-263 (269)
143 PF12329 TMF_DNA_bd: TATA elem 86.0 13 0.00029 29.8 10.1 31 226-256 14-44 (74)
144 TIGR02894 DNA_bind_RsfA transc 86.0 15 0.00033 34.0 11.7 31 227-257 100-130 (161)
145 PF05700 BCAS2: Breast carcino 85.8 7.5 0.00016 37.0 10.1 43 216-258 174-216 (221)
146 PF05149 Flagellar_rod: Parafl 85.7 42 0.00092 33.8 15.6 111 218-349 53-163 (289)
147 cd07666 BAR_SNX7 The Bin/Amphi 85.6 38 0.00082 33.2 16.9 58 146-203 88-152 (243)
148 PF12718 Tropomyosin_1: Tropom 85.6 27 0.00058 31.4 17.0 31 222-252 33-63 (143)
149 PF11932 DUF3450: Protein of u 85.4 36 0.00077 32.7 15.6 37 221-257 60-96 (251)
150 PF11180 DUF2968: Protein of u 85.3 30 0.00066 32.9 13.6 76 221-303 109-184 (192)
151 TIGR01069 mutS2 MutS2 family p 85.2 14 0.0003 41.6 13.3 7 332-338 661-667 (771)
152 PF00769 ERM: Ezrin/radixin/mo 85.2 38 0.00083 32.9 16.7 73 224-296 47-119 (246)
153 PRK08032 fliD flagellar cappin 85.2 3.7 8.1E-05 43.1 8.4 51 235-288 410-460 (462)
154 PF10267 Tmemb_cc2: Predicted 85.0 23 0.0005 37.0 13.9 31 175-205 211-241 (395)
155 TIGR03752 conj_TIGR03752 integ 84.9 11 0.00024 40.2 11.7 32 228-259 63-94 (472)
156 PF12128 DUF3584: Protein of u 84.8 52 0.0011 38.8 18.2 21 229-249 683-703 (1201)
157 TIGR02231 conserved hypothetic 84.7 19 0.0004 38.2 13.5 36 266-301 138-173 (525)
158 TIGR02680 conserved hypothetic 84.7 39 0.00084 40.4 17.3 7 194-200 255-261 (1353)
159 PRK13169 DNA replication intia 84.7 4.2 9.2E-05 35.3 7.1 15 304-319 78-92 (110)
160 KOG4674 Uncharacterized conser 84.6 49 0.0011 40.9 17.8 120 178-300 131-251 (1822)
161 TIGR02231 conserved hypothetic 84.3 14 0.0003 39.2 12.2 28 263-290 142-169 (525)
162 PF05266 DUF724: Protein of un 84.3 37 0.00081 32.0 15.9 107 187-293 66-179 (190)
163 PF05667 DUF812: Protein of un 84.1 60 0.0013 35.7 17.1 60 243-302 424-483 (594)
164 PF02403 Seryl_tRNA_N: Seryl-t 84.1 20 0.00043 29.9 10.8 39 215-253 27-65 (108)
165 PLN03188 kinesin-12 family pro 84.0 52 0.0011 39.2 17.3 31 243-277 1160-1191(1320)
166 KOG1029 Endocytic adaptor prot 84.0 14 0.0003 42.0 12.2 7 319-325 632-638 (1118)
167 KOG1899 LAR transmembrane tyro 83.7 24 0.00053 39.2 13.7 16 362-377 328-343 (861)
168 PF15066 CAGE1: Cancer-associa 83.6 62 0.0013 34.9 16.3 38 258-295 488-525 (527)
169 PF12128 DUF3584: Protein of u 83.6 59 0.0013 38.3 17.9 9 37-45 56-64 (1201)
170 PRK06798 fliD flagellar cappin 83.5 4.8 0.0001 42.3 8.3 54 232-288 380-433 (440)
171 TIGR03319 YmdA_YtgF conserved 83.4 33 0.00073 36.9 14.7 10 362-371 244-253 (514)
172 PRK00409 recombination and DNA 83.2 26 0.00056 39.5 14.4 17 143-159 389-405 (782)
173 TIGR03007 pepcterm_ChnLen poly 82.8 50 0.0011 34.4 15.5 29 176-204 161-189 (498)
174 KOG0612 Rho-associated, coiled 82.7 41 0.00089 39.9 15.7 14 187-200 512-525 (1317)
175 KOG4673 Transcription factor T 82.6 51 0.0011 37.2 15.7 13 147-159 409-421 (961)
176 PF05667 DUF812: Protein of un 82.6 41 0.00089 37.0 15.2 26 178-203 330-355 (594)
177 TIGR01000 bacteriocin_acc bact 82.3 67 0.0015 33.5 17.6 24 276-299 239-262 (457)
178 COG5185 HEC1 Protein involved 82.3 79 0.0017 34.3 17.8 58 222-279 335-395 (622)
179 KOG3647 Predicted coiled-coil 82.2 60 0.0013 32.8 15.1 33 143-175 53-85 (338)
180 PF05701 WEMBL: Weak chloropla 82.2 77 0.0017 34.0 17.2 60 243-302 384-443 (522)
181 PF15619 Lebercilin: Ciliary p 81.9 47 0.001 31.4 17.7 32 269-300 153-184 (194)
182 PF10234 Cluap1: Clusterin-ass 81.8 39 0.00084 33.7 13.4 34 218-251 184-217 (267)
183 PF15254 CCDC14: Coiled-coil d 81.7 49 0.0011 37.6 15.3 77 222-301 467-543 (861)
184 PRK00106 hypothetical protein; 81.7 59 0.0013 35.4 15.8 10 362-371 265-274 (535)
185 PF14662 CCDC155: Coiled-coil 81.6 50 0.0011 31.5 18.6 44 215-258 86-129 (193)
186 KOG4572 Predicted DNA-binding 81.6 54 0.0012 37.7 15.6 55 257-311 993-1047(1424)
187 KOG0980 Actin-binding protein 81.6 1.1E+02 0.0024 35.4 24.7 81 222-302 436-516 (980)
188 KOG0996 Structural maintenance 81.5 69 0.0015 38.0 16.8 20 178-197 414-433 (1293)
189 PF11414 Suppressor_APC: Adeno 81.4 26 0.00057 29.1 10.3 55 216-270 6-62 (84)
190 PF03961 DUF342: Protein of un 81.3 14 0.00031 38.4 10.9 87 162-248 320-406 (451)
191 PRK11519 tyrosine kinase; Prov 81.3 29 0.00064 38.4 13.8 31 174-204 265-295 (719)
192 COG4026 Uncharacterized protei 81.3 46 0.00099 32.8 13.3 38 214-251 153-190 (290)
193 KOG0979 Structural maintenance 81.1 44 0.00096 38.9 15.0 23 182-204 201-223 (1072)
194 KOG0239 Kinesin (KAR3 subfamil 80.7 69 0.0015 35.8 16.2 61 223-283 233-293 (670)
195 PF03962 Mnd1: Mnd1 family; I 80.2 31 0.00067 32.3 11.6 25 226-250 105-129 (188)
196 PRK09841 cryptic autophosphory 80.2 30 0.00065 38.4 13.4 22 227-248 307-328 (726)
197 PF11559 ADIP: Afadin- and alp 80.2 42 0.0009 29.7 13.6 27 222-248 78-104 (151)
198 KOG4643 Uncharacterized coiled 80.0 1.3E+02 0.0029 35.3 18.5 7 294-300 551-557 (1195)
199 PRK11281 hypothetical protein; 79.7 57 0.0012 38.5 15.8 27 178-204 82-108 (1113)
200 KOG0163 Myosin class VI heavy 79.3 61 0.0013 37.1 15.0 11 193-203 903-913 (1259)
201 KOG2129 Uncharacterized conser 79.0 22 0.00048 37.7 11.0 24 181-204 251-274 (552)
202 KOG4674 Uncharacterized conser 78.7 65 0.0014 39.8 16.1 31 221-251 126-156 (1822)
203 PF10174 Cast: RIM-binding pro 78.6 1.3E+02 0.0028 34.4 17.7 12 183-194 294-305 (775)
204 COG1382 GimC Prefoldin, chaper 78.6 41 0.00088 29.8 11.1 25 179-203 16-40 (119)
205 PF15070 GOLGA2L5: Putative go 78.3 82 0.0018 34.8 15.8 10 282-291 225-234 (617)
206 PF09787 Golgin_A5: Golgin sub 78.0 81 0.0018 33.7 15.4 8 334-341 386-393 (511)
207 PF03962 Mnd1: Mnd1 family; I 77.9 28 0.00061 32.5 10.6 31 221-251 66-96 (188)
208 KOG1029 Endocytic adaptor prot 77.9 81 0.0018 36.2 15.4 10 103-112 126-135 (1118)
209 TIGR03319 YmdA_YtgF conserved 77.9 89 0.0019 33.7 15.7 28 234-261 97-124 (514)
210 cd07674 F-BAR_FCHO1 The F-BAR 77.9 70 0.0015 31.0 17.1 18 320-337 244-261 (261)
211 TIGR01005 eps_transp_fam exopo 77.9 1.2E+02 0.0026 33.6 22.8 31 270-300 373-403 (754)
212 COG1345 FliD Flagellar capping 77.8 8.3 0.00018 41.2 7.9 49 237-288 428-476 (483)
213 TIGR02338 gimC_beta prefoldin, 77.8 40 0.00086 28.5 10.7 32 222-253 72-103 (110)
214 PF08172 CASP_C: CASP C termin 77.8 11 0.00024 36.9 8.2 34 271-304 91-124 (248)
215 PF06637 PV-1: PV-1 protein (P 77.6 98 0.0021 32.7 15.1 44 256-299 345-389 (442)
216 PF10174 Cast: RIM-binding pro 77.6 1.4E+02 0.003 34.2 17.9 18 278-295 383-400 (775)
217 PRK03947 prefoldin subunit alp 77.3 41 0.0009 29.3 11.0 26 178-203 22-47 (140)
218 PF03961 DUF342: Protein of un 77.3 15 0.00033 38.3 9.5 74 225-299 335-408 (451)
219 PF10224 DUF2205: Predicted co 77.2 20 0.00043 29.6 8.2 42 226-268 18-59 (80)
220 TIGR00634 recN DNA repair prot 77.2 1.1E+02 0.0024 32.9 16.2 77 232-313 323-402 (563)
221 PF09728 Taxilin: Myosin-like 77.2 85 0.0018 31.6 16.0 24 278-301 140-163 (309)
222 TIGR00570 cdk7 CDK-activating 77.2 89 0.0019 31.8 16.2 13 315-327 246-258 (309)
223 TIGR01005 eps_transp_fam exopo 77.1 90 0.002 34.5 15.9 20 326-345 419-439 (754)
224 TIGR00998 8a0101 efflux pump m 77.1 37 0.0008 33.1 11.7 20 181-200 78-97 (334)
225 PF01920 Prefoldin_2: Prefoldi 76.8 27 0.00059 28.3 9.1 35 220-254 65-99 (106)
226 PRK07737 fliD flagellar cappin 76.8 11 0.00023 40.3 8.4 51 235-288 445-495 (501)
227 PRK11578 macrolide transporter 76.2 49 0.0011 33.2 12.6 22 279-300 157-178 (370)
228 KOG4360 Uncharacterized coiled 76.1 1.1E+02 0.0023 33.5 15.3 70 216-285 232-301 (596)
229 KOG0972 Huntingtin interacting 76.0 75 0.0016 32.5 13.4 43 215-257 257-299 (384)
230 PRK10361 DNA recombination pro 75.8 1.2E+02 0.0026 32.7 18.3 26 223-248 91-116 (475)
231 PRK06664 fliD flagellar hook-a 75.8 9.3 0.0002 42.3 7.8 54 232-288 601-654 (661)
232 KOG4460 Nuclear pore complex, 75.7 1.4E+02 0.0029 33.2 17.9 18 166-183 553-570 (741)
233 cd00632 Prefoldin_beta Prefold 75.6 47 0.001 27.8 10.7 33 222-254 68-100 (105)
234 COG1730 GIM5 Predicted prefold 75.4 65 0.0014 29.3 12.1 29 175-203 19-47 (145)
235 PF08826 DMPK_coil: DMPK coile 75.1 20 0.00043 28.1 7.4 40 216-255 17-56 (61)
236 PF05529 Bap31: B-cell recepto 75.0 27 0.00059 32.1 9.6 29 226-254 156-184 (192)
237 PF06160 EzrA: Septation ring 74.8 1.3E+02 0.0028 32.6 17.0 150 145-302 166-335 (560)
238 PF09744 Jnk-SapK_ap_N: JNK_SA 74.8 70 0.0015 29.4 13.7 54 221-274 86-139 (158)
239 PF12777 MT: Microtubule-bindi 74.7 12 0.00027 37.7 7.8 18 346-364 314-333 (344)
240 KOG3758 Uncharacterized conser 74.2 1E+02 0.0023 34.2 14.9 140 153-309 16-160 (655)
241 PF07303 Occludin_ELL: Occludi 74.2 23 0.00051 30.1 8.2 71 225-300 23-93 (101)
242 KOG0982 Centrosomal protein Nu 74.1 1.3E+02 0.0028 32.2 15.4 12 293-304 409-420 (502)
243 PF06248 Zw10: Centromere/kine 74.1 89 0.0019 33.8 14.6 32 172-203 10-46 (593)
244 COG4477 EzrA Negative regulato 73.9 1E+02 0.0022 33.8 14.5 104 242-354 379-489 (570)
245 KOG0976 Rho/Rac1-interacting s 73.9 1.4E+02 0.0031 34.5 16.0 50 149-199 228-282 (1265)
246 PF14197 Cep57_CLD_2: Centroso 73.6 44 0.00096 26.6 10.0 33 268-300 35-67 (69)
247 PF07061 Swi5: Swi5; InterPro 73.6 14 0.00031 30.4 6.6 11 263-273 43-53 (83)
248 PF05911 DUF869: Plant protein 73.5 1.5E+02 0.0032 33.9 16.3 31 267-297 135-165 (769)
249 KOG4403 Cell surface glycoprot 73.4 1.3E+02 0.0027 32.5 14.8 45 272-316 346-391 (575)
250 PF10234 Cluap1: Clusterin-ass 73.4 1E+02 0.0022 30.7 14.6 29 222-250 174-202 (267)
251 KOG0963 Transcription factor/C 73.3 1.5E+02 0.0032 33.0 15.8 125 178-303 244-399 (629)
252 PF14197 Cep57_CLD_2: Centroso 73.2 45 0.00098 26.6 10.4 38 254-291 28-65 (69)
253 KOG4302 Microtubule-associated 73.1 30 0.00064 38.6 10.7 41 222-262 101-141 (660)
254 TIGR02473 flagell_FliJ flagell 72.9 59 0.0013 27.7 14.5 89 179-270 30-121 (141)
255 KOG2077 JNK/SAPK-associated pr 72.8 1.6E+02 0.0035 32.8 18.8 109 173-283 293-423 (832)
256 PF15188 CCDC-167: Coiled-coil 72.8 14 0.0003 30.9 6.3 24 280-303 43-66 (85)
257 PF07106 TBPIP: Tat binding pr 72.7 73 0.0016 28.7 12.5 30 222-251 77-106 (169)
258 PF10211 Ax_dynein_light: Axon 72.7 84 0.0018 29.4 17.8 55 220-274 123-178 (189)
259 PF05278 PEARLI-4: Arabidopsis 72.7 1.1E+02 0.0024 30.7 18.1 9 180-188 170-178 (269)
260 PRK14160 heat shock protein Gr 72.5 43 0.00093 32.2 10.5 30 338-370 137-166 (211)
261 PF10037 MRP-S27: Mitochondria 72.4 1.4E+02 0.003 31.7 15.3 31 243-273 370-400 (429)
262 PRK08724 fliD flagellar cappin 72.0 20 0.00043 40.0 9.1 51 234-287 620-670 (673)
263 KOG0243 Kinesin-like protein [ 72.0 1.8E+02 0.0039 34.2 16.8 31 222-252 481-511 (1041)
264 PF14257 DUF4349: Domain of un 71.9 27 0.00059 33.6 9.1 48 152-200 107-156 (262)
265 PF12761 End3: Actin cytoskele 71.8 77 0.0017 30.3 11.8 20 276-295 163-182 (195)
266 TIGR03017 EpsF chain length de 71.8 1.2E+02 0.0027 30.9 14.6 32 174-205 169-200 (444)
267 PF05557 MAD: Mitotic checkpoi 71.7 6.3 0.00014 43.5 5.4 125 175-299 398-536 (722)
268 PF09738 DUF2051: Double stran 71.5 1.1E+02 0.0023 31.0 13.5 35 214-248 102-136 (302)
269 PRK10929 putative mechanosensi 70.8 2.3E+02 0.0049 33.8 17.6 18 332-349 260-277 (1109)
270 PF13514 AAA_27: AAA domain 70.4 1.2E+02 0.0026 35.4 15.4 23 331-353 1019-1041(1111)
271 KOG4796 RNA polymerase II elon 69.8 17 0.00037 39.5 7.8 55 227-282 518-573 (604)
272 KOG0971 Microtubule-associated 69.8 2.3E+02 0.005 33.3 18.0 18 50-67 103-120 (1243)
273 PF05529 Bap31: B-cell recepto 69.3 38 0.00083 31.1 9.2 21 270-290 165-185 (192)
274 PF02388 FemAB: FemAB family; 69.2 16 0.00034 37.8 7.3 67 274-342 274-346 (406)
275 KOG0978 E3 ubiquitin ligase in 69.2 2E+02 0.0044 32.4 17.7 38 267-304 588-625 (698)
276 KOG0240 Kinesin (SMY1 subfamil 69.1 1.9E+02 0.0041 32.0 18.5 62 223-284 413-481 (607)
277 PF04899 MbeD_MobD: MbeD/MobD 69.0 59 0.0013 26.2 9.3 36 266-301 28-63 (70)
278 TIGR02977 phageshock_pspA phag 69.0 1.1E+02 0.0023 29.0 16.3 44 151-196 3-51 (219)
279 PF05911 DUF869: Plant protein 68.8 2.2E+02 0.0047 32.6 18.0 33 222-254 132-164 (769)
280 KOG1899 LAR transmembrane tyro 68.7 92 0.002 34.9 13.0 19 154-172 86-105 (861)
281 cd00890 Prefoldin Prefoldin is 68.5 70 0.0015 26.8 10.1 32 222-253 92-123 (129)
282 KOG0976 Rho/Rac1-interacting s 68.5 2.4E+02 0.0051 32.9 17.5 24 223-246 140-163 (1265)
283 KOG3800 Predicted E3 ubiquitin 68.4 38 0.00083 34.2 9.4 15 164-178 22-36 (300)
284 PRK13729 conjugal transfer pil 68.2 18 0.00038 38.8 7.5 13 362-374 211-223 (475)
285 PRK06800 fliH flagellar assemb 68.1 80 0.0017 30.4 11.0 18 257-274 96-113 (228)
286 PF02841 GBP_C: Guanylate-bind 68.0 1.3E+02 0.0028 29.7 13.9 31 171-201 150-184 (297)
287 KOG4643 Uncharacterized coiled 67.8 2.6E+02 0.0056 33.1 18.3 11 181-191 413-423 (1195)
288 PF14817 HAUS5: HAUS augmin-li 67.8 1.4E+02 0.003 33.3 14.4 46 228-273 83-128 (632)
289 KOG3119 Basic region leucine z 67.6 34 0.00073 33.7 8.9 56 215-270 206-261 (269)
290 PF03148 Tektin: Tektin family 67.4 1.6E+02 0.0034 30.4 16.5 39 264-302 313-353 (384)
291 COG4477 EzrA Negative regulato 67.1 2E+02 0.0044 31.6 15.8 24 175-198 284-307 (570)
292 PF07926 TPR_MLP1_2: TPR/MLP1/ 67.1 87 0.0019 27.3 16.4 73 216-291 58-130 (132)
293 KOG2391 Vacuolar sorting prote 66.9 58 0.0012 33.8 10.5 18 126-143 185-202 (365)
294 cd07593 BAR_MUG137_fungi The B 66.9 1.2E+02 0.0027 29.0 12.4 16 285-300 187-202 (215)
295 PLN02678 seryl-tRNA synthetase 66.3 69 0.0015 34.1 11.4 72 215-290 31-102 (448)
296 COG3206 GumC Uncharacterized p 66.1 1.7E+02 0.0037 30.4 14.6 113 177-295 286-402 (458)
297 PF12777 MT: Microtubule-bindi 66.0 1.1E+02 0.0023 31.0 12.3 24 278-301 80-103 (344)
298 KOG4593 Mitotic checkpoint pro 65.8 2.4E+02 0.0051 31.9 16.2 24 181-204 424-447 (716)
299 PF14712 Snapin_Pallidin: Snap 65.7 70 0.0015 25.8 13.2 76 224-300 14-91 (92)
300 PRK13182 racA polar chromosome 65.7 61 0.0013 30.2 9.7 67 231-306 85-151 (175)
301 TIGR03794 NHPM_micro_HlyD NHPM 65.5 1.7E+02 0.0036 30.1 17.2 47 280-327 227-273 (421)
302 PLN02372 violaxanthin de-epoxi 65.5 90 0.002 33.2 11.8 25 249-273 407-431 (455)
303 PF07352 Phage_Mu_Gam: Bacteri 65.2 97 0.0021 27.6 10.7 38 290-337 57-95 (149)
304 KOG1003 Actin filament-coating 65.2 1.4E+02 0.0029 28.9 16.9 65 237-301 108-172 (205)
305 PF05276 SH3BP5: SH3 domain-bi 65.2 1.4E+02 0.0031 29.2 14.2 37 263-299 181-217 (239)
306 KOG1103 Predicted coiled-coil 65.0 81 0.0018 33.1 11.2 28 145-172 57-85 (561)
307 PF13514 AAA_27: AAA domain 64.9 2.8E+02 0.0061 32.5 18.0 27 178-204 745-771 (1111)
308 KOG0993 Rab5 GTPase effector R 64.6 1.4E+02 0.0029 32.0 12.8 47 212-258 136-182 (542)
309 cd00584 Prefoldin_alpha Prefol 64.5 91 0.002 26.6 10.6 83 175-257 12-127 (129)
310 PF02050 FliJ: Flagellar FliJ 64.4 73 0.0016 25.5 14.4 85 178-266 14-101 (123)
311 TIGR02449 conserved hypothetic 64.4 65 0.0014 25.7 8.3 32 221-252 4-35 (65)
312 COG3074 Uncharacterized protei 64.3 79 0.0017 25.9 10.5 32 236-268 37-68 (79)
313 PF04012 PspA_IM30: PspA/IM30 64.3 1.2E+02 0.0027 28.2 14.0 95 165-261 21-135 (221)
314 KOG4571 Activating transcripti 64.2 27 0.00059 35.2 7.5 43 223-265 247-289 (294)
315 KOG0288 WD40 repeat protein Ti 63.8 1.8E+02 0.0039 31.1 13.5 15 343-357 206-220 (459)
316 PF10267 Tmemb_cc2: Predicted 63.8 2E+02 0.0043 30.3 14.4 22 338-359 344-365 (395)
317 PRK09343 prefoldin subunit bet 63.8 99 0.0022 26.8 11.8 30 222-251 76-105 (121)
318 PF10805 DUF2730: Protein of u 63.7 76 0.0016 27.0 9.2 32 268-299 67-98 (106)
319 KOG0978 E3 ubiquitin ligase in 63.7 2.6E+02 0.0056 31.6 17.7 51 252-302 566-616 (698)
320 KOG3091 Nuclear pore complex, 63.5 1E+02 0.0022 33.4 11.9 15 99-113 182-196 (508)
321 PF10779 XhlA: Haemolysin XhlA 63.1 73 0.0016 25.1 8.7 47 215-261 4-50 (71)
322 PRK05431 seryl-tRNA synthetase 62.9 66 0.0014 33.7 10.5 71 217-291 28-98 (425)
323 PF02994 Transposase_22: L1 tr 62.9 24 0.00051 36.3 7.1 11 321-331 191-201 (370)
324 PF02996 Prefoldin: Prefoldin 62.9 49 0.0011 27.6 7.9 26 178-203 5-30 (120)
325 KOG0018 Structural maintenance 62.8 3.2E+02 0.007 32.5 16.9 57 233-289 418-474 (1141)
326 PF14817 HAUS5: HAUS augmin-li 62.8 1.1E+02 0.0025 33.9 12.6 40 218-257 80-119 (632)
327 TIGR00634 recN DNA repair prot 62.5 2.3E+02 0.0049 30.6 14.7 15 189-203 188-202 (563)
328 PF05130 FlgN: FlgN protein; 62.5 90 0.0019 25.9 11.4 62 187-250 9-70 (143)
329 PF12761 End3: Actin cytoskele 62.4 69 0.0015 30.6 9.5 33 268-300 162-194 (195)
330 PF14932 HAUS-augmin3: HAUS au 62.4 82 0.0018 30.6 10.4 7 191-197 29-35 (256)
331 PF15397 DUF4618: Domain of un 62.3 1.7E+02 0.0037 29.1 16.7 34 222-255 72-105 (258)
332 PRK10246 exonuclease subunit S 62.0 3E+02 0.0066 32.1 16.4 25 176-200 184-208 (1047)
333 PF09763 Sec3_C: Exocyst compl 61.9 1.7E+02 0.0037 32.3 13.9 111 174-304 3-113 (701)
334 PF10481 CENP-F_N: Cenp-F N-te 61.9 1.9E+02 0.0041 29.4 14.1 27 274-300 89-115 (307)
335 COG1842 PspA Phage shock prote 61.2 1.6E+02 0.0035 28.5 17.4 38 151-190 3-45 (225)
336 KOG4460 Nuclear pore complex, 61.1 2.7E+02 0.0059 31.0 15.8 29 270-298 659-687 (741)
337 KOG4302 Microtubule-associated 61.1 2.8E+02 0.0061 31.2 15.3 23 226-248 119-141 (660)
338 KOG4603 TBP-1 interacting prot 60.9 1.6E+02 0.0034 28.1 11.9 90 217-308 79-178 (201)
339 PF09403 FadA: Adhesion protei 60.8 1.2E+02 0.0027 26.9 11.7 8 230-237 58-65 (126)
340 KOG1853 LIS1-interacting prote 60.8 1.9E+02 0.0042 29.1 17.1 7 334-340 246-252 (333)
341 PF07462 MSP1_C: Merozoite sur 60.4 69 0.0015 35.0 10.1 87 261-355 70-160 (574)
342 KOG1937 Uncharacterized conser 60.1 2.5E+02 0.0055 30.3 16.6 20 230-249 344-363 (521)
343 PRK10929 putative mechanosensi 59.8 3.7E+02 0.008 32.1 17.6 42 268-309 281-322 (1109)
344 COG3879 Uncharacterized protei 59.8 1E+02 0.0022 30.5 10.5 41 311-352 169-216 (247)
345 PRK15422 septal ring assembly 59.7 1E+02 0.0022 25.6 10.8 17 272-288 59-75 (79)
346 PRK00888 ftsB cell division pr 59.6 32 0.0007 29.3 6.3 31 221-251 31-61 (105)
347 PF10212 TTKRSYEDQ: Predicted 59.5 2.7E+02 0.0058 30.5 16.2 70 175-250 412-481 (518)
348 PF15294 Leu_zip: Leucine zipp 59.5 2E+02 0.0043 29.0 13.5 29 215-243 130-158 (278)
349 KOG4787 Uncharacterized conser 59.4 94 0.002 34.6 10.9 75 178-252 461-543 (852)
350 PRK10636 putative ABC transpor 59.3 62 0.0013 35.3 9.9 21 232-252 564-584 (638)
351 KOG1760 Molecular chaperone Pr 59.1 1.2E+02 0.0026 27.3 9.8 74 179-252 33-116 (131)
352 PF03980 Nnf1: Nnf1 ; InterPr 59.0 1.1E+02 0.0023 25.7 10.9 77 176-252 14-108 (109)
353 KOG2196 Nuclear porin [Nuclear 59.0 2E+02 0.0042 28.7 15.1 37 217-253 120-156 (254)
354 TIGR03017 EpsF chain length de 59.0 2.2E+02 0.0047 29.2 21.8 26 273-298 342-367 (444)
355 COG1340 Uncharacterized archae 58.6 2.1E+02 0.0046 29.0 16.8 64 229-292 177-240 (294)
356 KOG2196 Nuclear porin [Nuclear 58.5 2E+02 0.0043 28.6 15.3 29 275-303 221-249 (254)
357 KOG4005 Transcription factor X 58.3 1.1E+02 0.0023 30.6 10.2 17 183-199 59-75 (292)
358 TIGR00414 serS seryl-tRNA synt 58.2 1E+02 0.0023 32.1 11.0 36 216-251 29-64 (418)
359 TIGR01730 RND_mfp RND family e 58.0 63 0.0014 30.8 8.7 17 284-300 113-129 (322)
360 PF07195 FliD_C: Flagellar hoo 57.9 37 0.00081 32.3 7.1 45 229-276 191-235 (239)
361 PF13166 AAA_13: AAA domain 57.8 2.8E+02 0.0061 30.2 18.1 26 326-356 494-519 (712)
362 PRK05771 V-type ATP synthase s 57.8 45 0.00097 36.4 8.5 33 223-255 92-124 (646)
363 PF01496 V_ATPase_I: V-type AT 57.7 7.5 0.00016 43.2 2.6 24 288-311 154-177 (759)
364 KOG4809 Rab6 GTPase-interactin 57.7 2.5E+02 0.0055 31.1 13.7 19 153-171 214-232 (654)
365 KOG0946 ER-Golgi vesicle-tethe 57.6 2.1E+02 0.0045 33.1 13.4 24 145-168 584-609 (970)
366 COG1340 Uncharacterized archae 57.4 2.2E+02 0.0049 28.9 19.4 19 224-242 131-149 (294)
367 PF14257 DUF4349: Domain of un 57.3 1.8E+02 0.004 27.9 13.1 38 278-316 167-204 (262)
368 PRK10636 putative ABC transpor 57.3 71 0.0015 34.9 9.9 26 216-241 562-587 (638)
369 PF09798 LCD1: DNA damage chec 57.2 63 0.0014 36.1 9.5 60 229-294 2-61 (654)
370 PF04977 DivIC: Septum formati 56.5 40 0.00086 26.0 5.9 29 222-250 22-50 (80)
371 PF05377 FlaC_arch: Flagella a 56.3 53 0.0012 25.4 6.3 34 221-254 4-37 (55)
372 KOG4001 Axonemal dynein light 56.1 1.4E+02 0.0031 29.1 10.5 31 223-253 184-214 (259)
373 COG4717 Uncharacterized conser 56.1 1.6E+02 0.0035 34.2 12.4 97 225-321 775-879 (984)
374 PF08647 BRE1: BRE1 E3 ubiquit 55.8 1.2E+02 0.0026 25.3 12.8 6 185-190 5-10 (96)
375 KOG0946 ER-Golgi vesicle-tethe 55.8 2.1E+02 0.0046 33.1 13.1 68 230-297 649-716 (970)
376 PF10498 IFT57: Intra-flagella 55.7 2.5E+02 0.0055 29.0 13.7 72 226-297 247-318 (359)
377 PRK10869 recombination and rep 55.5 3E+02 0.0066 29.8 14.6 11 291-301 328-338 (553)
378 PF06120 Phage_HK97_TLTM: Tail 55.4 2.4E+02 0.0052 28.6 12.7 28 174-201 86-113 (301)
379 PRK11578 macrolide transporter 55.4 1.4E+02 0.003 29.9 11.1 26 274-299 159-184 (370)
380 PF05837 CENP-H: Centromere pr 55.2 1.3E+02 0.0028 25.5 10.4 41 220-260 6-46 (106)
381 PRK03947 prefoldin subunit alp 55.1 1.4E+02 0.0031 25.9 13.5 21 183-203 6-26 (140)
382 COG5220 TFB3 Cdk activating ki 55.0 92 0.002 31.1 9.2 17 188-204 78-94 (314)
383 COG0172 SerS Seryl-tRNA synthe 54.9 1.5E+02 0.0032 31.6 11.4 92 216-315 28-119 (429)
384 KOG4196 bZIP transcription fac 54.5 55 0.0012 29.6 7.0 28 222-249 79-106 (135)
385 PF06632 XRCC4: DNA double-str 54.4 2.3E+02 0.0051 29.2 12.5 24 263-286 184-207 (342)
386 PF07716 bZIP_2: Basic region 54.4 50 0.0011 24.5 5.8 30 223-252 24-53 (54)
387 KOG0962 DNA repair protein RAD 54.1 4.8E+02 0.01 31.7 16.9 14 301-314 942-955 (1294)
388 KOG0994 Extracellular matrix g 54.1 4.8E+02 0.011 31.7 17.8 11 291-301 1704-1714(1758)
389 PF15188 CCDC-167: Coiled-coil 54.1 38 0.00083 28.3 5.6 60 182-245 4-64 (85)
390 PRK10869 recombination and rep 54.0 3.2E+02 0.0069 29.6 18.2 77 233-314 319-398 (553)
391 PF15372 DUF4600: Domain of un 53.7 1.7E+02 0.0037 26.3 12.3 39 226-267 53-91 (129)
392 PF12999 PRKCSH-like: Glucosid 53.6 68 0.0015 30.2 7.8 14 163-176 97-110 (176)
393 PRK10698 phage shock protein P 53.6 2.1E+02 0.0046 27.4 18.7 48 248-295 102-149 (222)
394 KOG0018 Structural maintenance 53.5 4E+02 0.0086 31.8 15.1 30 221-250 811-840 (1141)
395 PF15290 Syntaphilin: Golgi-lo 53.5 2.6E+02 0.0056 28.5 12.4 87 210-296 54-140 (305)
396 PF11180 DUF2968: Protein of u 53.5 2.1E+02 0.0046 27.4 15.5 58 223-280 125-182 (192)
397 KOG0796 Spliceosome subunit [R 53.4 2.7E+02 0.0059 28.6 12.8 32 172-203 56-89 (319)
398 COG3883 Uncharacterized protei 53.3 2.5E+02 0.0054 28.1 18.4 28 178-205 33-60 (265)
399 PF14723 SSFA2_C: Sperm-specif 53.2 2E+02 0.0044 27.2 10.7 19 185-203 107-125 (179)
400 KOG4677 Golgi integral membran 53.1 2.2E+02 0.0048 30.8 12.2 43 268-310 350-392 (554)
401 PF07058 Myosin_HC-like: Myosi 52.9 1.9E+02 0.0041 29.8 11.2 21 178-198 2-22 (351)
402 TIGR02977 phageshock_pspA phag 52.8 2.1E+02 0.0045 27.1 14.5 50 246-295 100-149 (219)
403 PLN02320 seryl-tRNA synthetase 52.8 1.2E+02 0.0026 32.8 10.5 32 218-249 94-125 (502)
404 PRK15335 type III secretion sy 52.8 1.4E+02 0.0031 27.1 9.3 21 233-253 68-88 (147)
405 PF07111 HCR: Alpha helical co 52.7 4E+02 0.0086 30.3 17.9 35 265-299 241-275 (739)
406 PRK09343 prefoldin subunit bet 52.6 1.6E+02 0.0034 25.6 10.7 22 277-298 89-110 (121)
407 COG0419 SbcC ATPase involved i 52.5 4.1E+02 0.0089 30.4 17.9 27 258-284 395-421 (908)
408 TIGR02971 heterocyst_DevB ABC 52.4 2.3E+02 0.0051 27.6 14.6 20 278-297 184-203 (327)
409 PRK05689 fliJ flagellar biosyn 52.2 1.6E+02 0.0035 25.6 15.4 55 219-273 73-127 (147)
410 KOG3564 GTPase-activating prot 52.2 1.3E+02 0.0028 32.8 10.4 32 172-203 17-48 (604)
411 PF05010 TACC: Transforming ac 51.7 2.3E+02 0.0049 27.2 16.6 32 264-295 159-190 (207)
412 PF09403 FadA: Adhesion protei 51.7 1.5E+02 0.0032 26.4 9.3 62 235-298 56-118 (126)
413 PF05557 MAD: Mitotic checkpoi 51.1 5 0.00011 44.3 0.0 22 181-202 310-331 (722)
414 PF06008 Laminin_I: Laminin Do 50.9 2.4E+02 0.0051 27.2 15.5 27 262-288 181-207 (264)
415 PF02388 FemAB: FemAB family; 50.9 1.1E+02 0.0025 31.5 9.8 15 189-203 214-228 (406)
416 PF14362 DUF4407: Domain of un 50.3 2.2E+02 0.0049 27.8 11.4 20 271-290 194-213 (301)
417 smart00338 BRLZ basic region l 50.3 70 0.0015 24.4 6.3 28 228-255 30-57 (65)
418 KOG3091 Nuclear pore complex, 50.2 59 0.0013 35.1 7.6 24 175-202 337-360 (508)
419 PLN02678 seryl-tRNA synthetase 50.0 1.3E+02 0.0028 32.1 10.1 72 175-251 33-105 (448)
420 PF13815 Dzip-like_N: Iguana/D 49.9 60 0.0013 27.9 6.5 29 223-251 86-114 (118)
421 KOG3478 Prefoldin subunit 6, K 49.9 1.9E+02 0.004 25.7 11.1 28 178-205 7-34 (120)
422 PF02403 Seryl_tRNA_N: Seryl-t 49.7 1.5E+02 0.0032 24.5 10.2 20 181-200 34-53 (108)
423 PF02090 SPAM: Salmonella surf 49.7 2.1E+02 0.0046 26.3 10.9 41 233-273 68-115 (147)
424 KOG0249 LAR-interacting protei 49.5 4.5E+02 0.0098 30.2 14.3 37 222-258 221-257 (916)
425 KOG3647 Predicted coiled-coil 49.4 1.9E+02 0.004 29.5 10.4 11 290-300 192-202 (338)
426 PF13863 DUF4200: Domain of un 49.4 1.6E+02 0.0035 24.8 13.7 93 213-305 21-113 (126)
427 PRK03598 putative efflux pump 49.2 2.7E+02 0.0059 27.4 12.4 92 210-303 74-175 (331)
428 PF13747 DUF4164: Domain of un 49.0 1.6E+02 0.0034 24.5 8.9 65 235-303 5-69 (89)
429 PF07889 DUF1664: Protein of u 49.0 2E+02 0.0042 25.7 11.8 36 265-300 88-123 (126)
430 cd07596 BAR_SNX The Bin/Amphip 48.9 2E+02 0.0043 25.8 19.7 14 286-299 199-212 (218)
431 smart00502 BBC B-Box C-termina 48.8 1.5E+02 0.0032 24.2 14.9 24 180-203 4-27 (127)
432 PRK05431 seryl-tRNA synthetase 48.7 1.4E+02 0.003 31.3 10.1 71 175-250 28-99 (425)
433 PRK12765 flagellar capping pro 48.5 92 0.002 34.2 9.1 56 233-291 534-589 (595)
434 PF14988 DUF4515: Domain of un 48.2 2.5E+02 0.0054 26.7 16.0 25 170-194 16-40 (206)
435 PF05615 THOC7: Tho complex su 48.2 1.9E+02 0.004 25.2 11.4 69 178-252 41-109 (139)
436 PF04977 DivIC: Septum formati 48.2 39 0.00085 26.0 4.7 31 227-257 20-50 (80)
437 PF03245 Phage_lysis: Bacterio 48.1 1.6E+02 0.0034 25.8 8.9 34 245-278 21-54 (125)
438 PF09304 Cortex-I_coil: Cortex 47.9 1.9E+02 0.0042 25.3 15.6 8 185-192 18-25 (107)
439 PF06818 Fez1: Fez1; InterPro 47.4 2.7E+02 0.0058 26.8 12.8 22 178-199 12-33 (202)
440 PF10458 Val_tRNA-synt_C: Valy 47.3 76 0.0016 24.6 6.1 17 225-241 5-21 (66)
441 KOG0962 DNA repair protein RAD 47.1 5.9E+02 0.013 31.0 15.5 51 143-203 162-212 (1294)
442 COG4985 ABC-type phosphate tra 47.1 1.8E+02 0.0039 29.0 9.8 26 228-253 218-243 (289)
443 PF04880 NUDE_C: NUDE protein, 46.6 35 0.00076 31.7 4.7 8 302-309 74-81 (166)
444 KOG2077 JNK/SAPK-associated pr 46.6 1.8E+02 0.0039 32.4 10.6 46 213-258 325-370 (832)
445 TIGR01554 major_cap_HK97 phage 46.5 2.3E+02 0.0051 28.6 11.1 81 178-271 1-92 (378)
446 PF15369 KIAA1328: Uncharacter 46.5 3.5E+02 0.0076 27.9 12.5 30 222-251 31-60 (328)
447 PRK10476 multidrug resistance 46.4 3.1E+02 0.0067 27.2 14.1 23 181-203 84-106 (346)
448 TIGR03545 conserved hypothetic 46.3 3.8E+02 0.0081 29.4 13.2 61 190-252 191-258 (555)
449 KOG0239 Kinesin (KAR3 subfamil 46.3 4.8E+02 0.01 29.4 15.5 15 342-356 378-392 (670)
450 PF08286 Spc24: Spc24 subunit 46.0 7.2 0.00016 33.5 0.2 32 226-257 8-39 (118)
451 PF12126 DUF3583: Protein of u 45.8 3.5E+02 0.0076 27.7 12.7 22 294-315 115-136 (324)
452 PHA03161 hypothetical protein; 45.7 91 0.002 28.7 7.1 15 318-332 132-146 (150)
453 PF05622 HOOK: HOOK protein; 45.6 6.9 0.00015 43.2 0.0 23 278-300 396-418 (713)
454 KOG0249 LAR-interacting protei 45.5 5.3E+02 0.011 29.7 14.5 32 269-300 226-257 (916)
455 TIGR03495 phage_LysB phage lys 45.5 2.3E+02 0.005 25.5 11.3 36 279-317 67-102 (135)
456 KOG2264 Exostosin EXT1L [Signa 45.4 1.3E+02 0.0027 33.7 9.2 41 218-258 94-134 (907)
457 PF13874 Nup54: Nucleoporin co 45.4 1.5E+02 0.0032 26.3 8.4 40 236-275 84-123 (141)
458 PTZ00266 NIMA-related protein 45.0 2.9E+02 0.0063 32.6 12.7 12 316-327 548-559 (1021)
459 PF05008 V-SNARE: Vesicle tran 44.9 1.5E+02 0.0032 23.1 8.0 29 230-258 24-52 (79)
460 PF11365 DUF3166: Protein of u 44.7 1.1E+02 0.0023 26.3 6.9 43 211-253 2-44 (96)
461 KOG4438 Centromere-associated 44.6 4.3E+02 0.0093 28.4 13.8 7 194-200 132-138 (446)
462 PF09731 Mitofilin: Mitochondr 44.4 4.3E+02 0.0093 28.3 17.3 122 178-301 260-392 (582)
463 PF03915 AIP3: Actin interacti 44.3 4.2E+02 0.0091 28.2 16.8 55 218-272 247-301 (424)
464 PF07851 TMPIT: TMPIT-like pro 44.3 3.1E+02 0.0066 28.3 11.4 26 179-204 7-32 (330)
465 PF15254 CCDC14: Coiled-coil d 44.1 5.6E+02 0.012 29.6 17.1 83 222-304 439-525 (861)
466 TIGR02971 heterocyst_DevB ABC 44.1 2E+02 0.0043 28.1 9.9 22 280-301 135-156 (327)
467 COG4467 Regulator of replicati 44.1 44 0.00095 29.3 4.6 86 227-318 4-95 (114)
468 PF05461 ApoL: Apolipoprotein 44.0 2.4E+02 0.0052 28.6 10.6 92 224-326 29-120 (313)
469 KOG3850 Predicted membrane pro 43.9 4.3E+02 0.0093 28.2 13.8 86 213-298 263-349 (455)
470 TIGR00999 8a0102 Membrane Fusi 43.8 1.4E+02 0.0031 27.8 8.6 23 279-301 60-82 (265)
471 PRK10698 phage shock protein P 43.8 3E+02 0.0065 26.3 14.5 25 173-197 28-52 (222)
472 PF04420 CHD5: CHD5-like prote 43.5 45 0.00099 30.3 5.0 18 224-241 40-57 (161)
473 cd07611 BAR_Amphiphysin_I_II T 43.3 3.1E+02 0.0068 26.4 14.3 25 256-280 183-207 (211)
474 PF04108 APG17: Autophagy prot 42.8 4.1E+02 0.0089 27.7 18.1 40 262-301 342-381 (412)
475 PF15290 Syntaphilin: Golgi-lo 42.8 3.8E+02 0.0083 27.3 14.5 104 169-294 68-173 (305)
476 cd07673 F-BAR_FCHO2 The F-BAR 42.7 3.4E+02 0.0073 26.6 17.1 147 177-337 121-268 (269)
477 PF09340 NuA4: Histone acetylt 42.6 69 0.0015 26.1 5.4 33 231-266 2-34 (80)
478 KOG1103 Predicted coiled-coil 42.6 4.4E+02 0.0095 27.9 14.7 141 144-295 56-196 (561)
479 PF07989 Microtub_assoc: Micro 42.2 1.8E+02 0.004 23.4 9.7 69 178-248 2-74 (75)
480 PF11221 Med21: Subunit 21 of 42.1 1.9E+02 0.0041 25.7 8.6 67 178-250 71-137 (144)
481 PF13166 AAA_13: AAA domain 41.8 5E+02 0.011 28.3 19.4 184 145-354 334-517 (712)
482 PF06785 UPF0242: Uncharacteri 41.7 4.4E+02 0.0095 27.6 15.6 111 179-299 71-181 (401)
483 KOG3595 Dyneins, heavy chain [ 41.5 7.4E+02 0.016 30.2 16.5 124 175-304 699-822 (1395)
484 PF05852 DUF848: Gammaherpesvi 41.5 2.7E+02 0.0058 25.5 9.5 91 224-332 54-145 (146)
485 PF09321 DUF1978: Domain of un 41.3 3.7E+02 0.008 26.7 14.9 109 185-301 93-220 (241)
486 PF09738 DUF2051: Double stran 41.2 4E+02 0.0086 27.0 12.5 82 219-300 79-160 (302)
487 PF07407 Seadorna_VP6: Seadorn 41.0 1.3E+02 0.0028 31.3 8.1 73 218-290 33-110 (420)
488 KOG4572 Predicted DNA-binding 40.9 5.2E+02 0.011 30.4 13.2 119 168-300 953-1072(1424)
489 COG3334 Uncharacterized conser 40.9 2.3E+02 0.005 27.1 9.3 63 219-302 65-127 (192)
490 PF14932 HAUS-augmin3: HAUS au 40.8 3.5E+02 0.0076 26.3 11.6 81 178-260 70-150 (256)
491 PF11471 Sugarporin_N: Maltopo 40.6 50 0.0011 25.7 4.1 31 229-259 30-60 (60)
492 PF04799 Fzo_mitofusin: fzo-li 40.4 2.9E+02 0.0063 26.0 9.7 64 222-289 103-167 (171)
493 PF08826 DMPK_coil: DMPK coile 40.4 1.8E+02 0.0039 22.8 9.1 61 180-246 1-61 (61)
494 PRK06800 fliH flagellar assemb 40.4 3.5E+02 0.0076 26.2 12.7 83 212-294 33-115 (228)
495 PRK07720 fliJ flagellar biosyn 40.2 2.5E+02 0.0055 24.5 15.1 106 174-279 28-133 (146)
496 PLN02320 seryl-tRNA synthetase 40.1 2.2E+02 0.0049 30.8 10.2 69 175-247 99-167 (502)
497 PF07851 TMPIT: TMPIT-like pro 39.9 3.7E+02 0.0079 27.8 11.2 75 228-302 1-83 (330)
498 TIGR02449 conserved hypothetic 39.8 1.3E+02 0.0028 24.0 6.3 42 218-259 1-42 (65)
499 PLN03086 PRLI-interacting fact 39.8 3.8E+02 0.0081 29.7 11.9 90 228-322 4-133 (567)
500 KOG4005 Transcription factor X 39.8 4E+02 0.0087 26.7 13.1 95 203-297 57-156 (292)
No 1
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=6.4e-81 Score=622.90 Aligned_cols=339 Identities=52% Similarity=0.818 Sum_probs=314.2
Q ss_pred EeecccccccccCCccCcCCCCCcccccccccccCCCCCceeecCCCCC-CCCCCCCCCCCCCCCcccccCCCCCccceE
Q 016990 33 IVGVDSYADKYLNDSSRSTMHGSSIHASNSVLGSTRMDNSFVVLPKQRP-QSHGVPPRPRGSSAQSEASQSGKAMDESFV 111 (379)
Q Consensus 33 i~g~d~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~~~d~s~vvl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~eSfV 111 (379)
++|+|+|+++++..|..+.-.+.++|+..++.+..+|+.+++|+|.+.+ ++.+.+++++++.. +++. ++.++.+|||
T Consensus 1 ~~g~~~s~~~~~q~~~~~~r~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~t~~~~a~~-~~~~-~~~~~~~~~~ 78 (447)
T KOG2751|consen 1 IVGVDSSANKFFQVPFPCQRCLQPIHLDNSLLGSDRMDISELVLPLHKPPQSQGGPTRPRGASS-GDAT-SGKTPQESSV 78 (447)
T ss_pred CcccccccccccCCChhhhhccchhhhhhhhccccccchhhccCCCCCCccccCCCccCccccC-cccc-CCcchhhccc
Confidence 5899999999999998888889999999999999999999999999966 99999999999887 4555 8889999999
Q ss_pred EEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchHHHHHHHHHhhcCCCCcCCcchHHHHHHHHHHHHHHHHHHHHH
Q 016990 112 VIYKSESASDGGGPHIPPPEGGTNGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRD 191 (379)
Q Consensus 112 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lss~i~~l~~lFdIlSs~s~IDhPLC~ECtd~Lle~Ld~qle~~~~E 191 (379)
+.+...+..+....+-+....+..++...+.+++++++++++++|+|||++++||||+|.||+|.|++.|+++++.+++|
T Consensus 79 ~~~~~~p~r~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~f~i~~~qt~~d~PlC~eC~d~l~~~ld~e~~~~~~e 158 (447)
T KOG2751|consen 79 VVYFSPPVRDSDTEHNLSFELGENGSDGSNTKTLSATINVLTRLFDILSSQTQVDHPLCEECMDVLLNKLDKEVEDAEDE 158 (447)
T ss_pred eecccCcccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99877665555555544444443444566778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 192 IEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNF 271 (379)
Q Consensus 192 ~d~Y~~fL~~L~~~~~~~~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~ 271 (379)
+++|++|+++|+++..+. +++++.+|+++++.||++|.++|++++++.++++.++.+++.+..++.++|.+||++||.+
T Consensus 159 ~~~Y~~~l~~Le~~~~~~-~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~ 237 (447)
T KOG2751|consen 159 VDTYKACLQRLEQQNQDV-SEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNF 237 (447)
T ss_pred HHHHHHHHHHHhhcCccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999876543 7889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCceeeeecCCceeecccccCCCCCCCCChhhHHHHHHHHHHHHHH
Q 016990 272 QFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHT 351 (379)
Q Consensus 272 q~qL~~~~eE~~sl~~q~~~~~~qLdkLrkTNV~nd~F~I~hdG~fGTINgfRLGrlp~~~V~W~EINAAwGQ~~LLL~t 351 (379)
++++.+++++++||++|++|++.||++|++|||||.+|||||+|+|||||||||||+|.+||+|+||||||||+||||++
T Consensus 238 ~~q~~~~~del~Sle~q~~~s~~qldkL~ktNv~n~~F~I~~~G~fgtIN~FRLG~lp~~pVew~EINAA~GQ~vLLL~~ 317 (447)
T KOG2751|consen 238 QRQLIEHQDELDSLEAQIEYSQAQLDKLRKTNVFNATFHIWHDGEFGTINNFRLGRLPSVPVEWDEINAAWGQTVLLLHT 317 (447)
T ss_pred HHhhhcccchHHHHHHHHHHHHHHHHHHHhhhhhhheeeEeecccccccccceeccccCCCcCHHHHHHHhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCcc-eeEEeccceeeee
Q 016990 352 MCQYFRPKFP-YPFFTSLCFLVIV 374 (379)
Q Consensus 352 la~kl~~~Fq-YrLvp~gs~~~~~ 374 (379)
|++|+|++|+ ||||||||+|.|+
T Consensus 318 l~~kig~~~~~y~lvp~GshSyI~ 341 (447)
T KOG2751|consen 318 LANKIGLNFVRYRLVPMGSHSYIK 341 (447)
T ss_pred HHHhcCcccceeeeecccchhHHH
Confidence 9999999998 9999999999986
No 2
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=100.00 E-value=2.7e-68 Score=522.23 Aligned_cols=209 Identities=44% Similarity=0.780 Sum_probs=146.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 168 PLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAEL 247 (379)
Q Consensus 168 PLC~ECtd~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el 247 (379)
|||.||++.|+++|+.+++++++|+++|..||++++.+.....+..++.+++.++++||++|.++|+++|++++++++|+
T Consensus 1 PlC~eC~~~l~~~l~~~~~~~~~E~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el 80 (314)
T PF04111_consen 1 PLCQECTDLLLEQLDKQLEQAEKERDTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQEL 80 (314)
T ss_dssp -----------------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999853222223466788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCceeeeecCCceeecccccCC
Q 016990 248 KELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGR 327 (379)
Q Consensus 248 ~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrkTNV~nd~F~I~hdG~fGTINgfRLGr 327 (379)
.+++.+.++++++|++||+++|.+++++.+++++++++++||+++++||++|+||||||++|||||||+|||||||||||
T Consensus 81 ~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktNv~n~~F~I~hdG~fGTINGlRLGr 160 (314)
T PF04111_consen 81 EELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTNVYNDTFHIWHDGPFGTINGLRLGR 160 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--TTTTT--EEEETTEEEETTEEE--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhceeeEeecCCeeeECCeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHHHhhcCCCcc-eeEEeccceeeeecC
Q 016990 328 LPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFP-YPFFTSLCFLVIVDG 376 (379)
Q Consensus 328 lp~~~V~W~EINAAwGQ~~LLL~tla~kl~~~Fq-YrLvp~gs~~~~~~~ 376 (379)
+|++||+|+||||||||+||||++||++++++|+ |||+||||||+|++-
T Consensus 161 l~~~~V~W~EINAA~Gq~~LLL~~la~~l~~~f~~y~l~P~Gs~S~I~~~ 210 (314)
T PF04111_consen 161 LPNVPVEWNEINAAWGQTALLLQTLAKKLNFKFQRYRLVPMGSFSKIEKL 210 (314)
T ss_dssp BTTB---HHHHHHHHHHHHHHHHHHHHHCT---SSEEEE--GGG-EEEEC
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCcccceeEecCCCCEEEEe
Confidence 9999999999999999999999999999999997 999999999999864
No 3
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=99.30 E-value=9.2e-10 Score=104.68 Aligned_cols=204 Identities=20% Similarity=0.316 Sum_probs=118.9
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hhc-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 166 EQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEG-EAR-DVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEV 243 (379)
Q Consensus 166 DhPLC~ECtd~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~-~~~-~~~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l 243 (379)
-..+|..|+..=+-.++..+..+..+.+....-++.+-. ... .......+..+...++.....+..+++.+.++.++.
T Consensus 10 ~~~~C~~C~~~~L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~ 89 (302)
T PF10186_consen 10 RRFYCANCVNNRLLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQK 89 (302)
T ss_pred CCeECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999888765554322 100 000111222233333444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCceeeee---
Q 016990 244 NAELKELELKSKRFKE-------LEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWH--- 313 (379)
Q Consensus 244 ~~el~~le~e~~~L~e-------eEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrkTNV~nd~F~I~h--- 313 (379)
.+.+.+++........ ..+.........+..+.........+..++...+.++ ..-++..|.|..
T Consensus 90 r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l-----~~~l~~ifpI~~~~~ 164 (302)
T PF10186_consen 90 RERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRRRQL-----IQELSEIFPIEQVSS 164 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhCceeecc
Confidence 4444444433322221 2222222222233333333333333333333333322 223556888832
Q ss_pred --------cCCceeecccccCCCCC-CCCChhhHHHHHHHHHHHHHHHHhhcCCCcceeEEeccceeeeec
Q 016990 314 --------DGEFGTINNFRLGRLPK-IPVEWDEINAAWGQACLLLHTMCQYFRPKFPYPFFTSLCFLVIVD 375 (379)
Q Consensus 314 --------dG~fGTINgfRLGrlp~-~~V~W~EINAAwGQ~~LLL~tla~kl~~~FqYrLvp~gs~~~~~~ 375 (379)
.+.|. |.|+.|=...+ ...+=.+|+||+|.++.|+..||.+|++...|++.|.||.|.|.|
T Consensus 165 ~~~~~~~~~~~~~-I~~~~lp~~~~~~~~~~~~isaALgyvahlv~lls~yL~v~Lpy~i~~~gs~s~i~d 234 (302)
T PF10186_consen 165 PRRPSDSSSSEYT-ICGLPLPNSRDFNSLPDEEISAALGYVAHLVSLLSRYLGVPLPYPITPSGSRSTIID 234 (302)
T ss_pred cccCCCCCCCCee-ecCcccCCCcccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccCccccchhh
Confidence 35665 88887654422 334558999999999999999999999988899999999999988
No 4
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=98.98 E-value=9.3e-10 Score=112.12 Aligned_cols=239 Identities=10% Similarity=-0.021 Sum_probs=133.8
Q ss_pred CCCCccceEEEecCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCccchHHHHHHHHHhhcCCCCcCCcchHHHHHHHHHHH
Q 016990 103 GKAMDESFVVIYKSESASDGGGPHIPPPEGGT-NGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKL 181 (379)
Q Consensus 103 ~~~~~eSfV~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~lss~i~~l~~lFdIlSs~s~IDhPLC~ECtd~Lle~L 181 (379)
+..|.|+++.+... .++.++.+..+..+++. .++..+ ....+....+-...|+-.++++.+|||.|..|...+...+
T Consensus 36 ~~~~~~~~~p~~~~-~~~~~~~t~~~~a~~~~~~~~~~~-~~~~~~~~~~~p~r~~~~~~~~~~~~~~~~~~~~~~~~~s 113 (447)
T KOG2751|consen 36 RMDISELVLPLHKP-PQSQGGPTRPRGASSGDATSGKTP-QESSVVVYFSPPVRDSDTEHNLSFELGENGSDGSNTKTLS 113 (447)
T ss_pred ccchhhccCCCCCC-ccccCCCccCccccCccccCCcch-hhccceecccCcccccccccccccccccccchhhhhHHHH
Confidence 44555666666544 22333333322222211 122223 3345666677778899999999999999999999887755
Q ss_pred HHHHHHHHHHHHHHH----------HHHHHH----hchhcccCCH----HHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 016990 182 DKEVDDVTRDIEAYE----------ACLQRL----EGEARDVLSE----ADFLKEKLK--IEEEERKLEAAIEETEKQNA 241 (379)
Q Consensus 182 d~qle~~~~E~d~Y~----------~fL~~L----~~~~~~~~~e----e~l~~el~~--Le~EE~~L~~eLeelEkE~~ 241 (379)
-+=...+....-.|. .|.+-| .++...+..+ +.+...++. -..++..+..+++.+..|..
T Consensus 114 ~~~~~~~~~f~i~~~qt~~d~PlC~eC~d~l~~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~ 193 (447)
T KOG2751|consen 114 ATINVLTRLFDILSSQTQVDHPLCEECMDVLLNKLDKEVEDAEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEE 193 (447)
T ss_pred HHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHH
Confidence 443333322222221 122211 1110000000 000000000 00123344444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCcee------eeecC
Q 016990 242 EVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFP------IWHDG 315 (379)
Q Consensus 242 ~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrkTNV~nd~F~------I~hdG 315 (379)
++-+++++++++...++.++.+ +-...++.+++.++|.+-|. |-|+|
T Consensus 194 ~L~q~lk~le~~~~~l~~~l~e---------------------------~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~d 246 (447)
T KOG2751|consen 194 RLLQQLEELEKEEAELDHQLKE---------------------------LEFKAERLNEEEDQYWREYNNFQRQLIEHQD 246 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 4444444444444433333221 12222344444444444443 56789
Q ss_pred CceeecccccCCCCCCCCChhhHHHHHHHHHHHHHHHHhhcCCCcc-eeEEeccce
Q 016990 316 EFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFP-YPFFTSLCF 370 (379)
Q Consensus 316 ~fGTINgfRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~kl~~~Fq-YrLvp~gs~ 370 (379)
...+|++.|.|+++...+-|.+++++||-.+.+.-.++.+.||... |..+|.++-
T Consensus 247 el~Sle~q~~~s~~qldkL~ktNv~n~~F~I~~~G~fgtIN~FRLG~lp~~pVew~ 302 (447)
T KOG2751|consen 247 ELDSLEAQIEYSQAQLDKLRKTNVFNATFHIWHDGEFGTINNFRLGRLPSVPVEWD 302 (447)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhheeeEeecccccccccceeccccCCCcCHH
Confidence 9999999999999999999999999999999999999999888775 999988764
No 5
>KOG2896 consensus UV radiation resistance associated protein [General function prediction only]
Probab=98.34 E-value=6.2e-05 Score=76.17 Aligned_cols=111 Identities=21% Similarity=0.275 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---cCceeeeecC-Cce------------
Q 016990 255 KRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVL---NDAFPIWHDG-EFG------------ 318 (379)
Q Consensus 255 ~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrkTNV~---nd~F~I~hdG-~fG------------ 318 (379)
..++....+|-...-+++.+..++.+.+-++.+ .++++.- =++|.|..+| +.-
T Consensus 141 ~kL~~kr~q~~~~q~~l~k~~k~l~e~~~~l~a-----------~re~fL~~~~~~~~~irq~~~~~s~i~~l~~~~~~~ 209 (377)
T KOG2896|consen 141 QKLEDKRQQFNASQVKLQKQLKSLIELRNELVA-----------KRELFLEQRIQDTFKIRQDGSPLSKILPLQFSYCHL 209 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-----------HHHhhHhHHHhhhhhhhccCcchheeecCCcccchh
Confidence 344444444544444555554444444444333 3333322 2578887776 222
Q ss_pred --eecccccCCCCCCCC-ChhhHHHHHHHHHHHHHHHHhhcCCCcceeEEeccceeeeecC
Q 016990 319 --TINNFRLGRLPKIPV-EWDEINAAWGQACLLLHTMCQYFRPKFPYPFFTSLCFLVIVDG 376 (379)
Q Consensus 319 --TINgfRLGrlp~~~V-~W~EINAAwGQ~~LLL~tla~kl~~~FqYrLvp~gs~~~~~~~ 376 (379)
||-|++|--.++..- +=.|+-||+|-++-|+++||..|.+...|.|++-||+|.|+|-
T Consensus 210 v~tIrGl~lp~~~d~~~~s~~~~aaALGylaHLv~~Is~~L~~pLRYPIl~~~Sks~I~D~ 270 (377)
T KOG2896|consen 210 VFTIRGLKLPFIEDKQNKSEQETAAALGYLAHLVSMISKYLEVPLRYPILLAGSKSYIRDY 270 (377)
T ss_pred hhhhhcccCCchhhhhccchHHHHHHHHHHHHHHHHHHHHhccccccccccccccceeccc
Confidence 455565554443221 3457889999999999999999988778999999999999995
No 6
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.27 E-value=0.031 Score=63.53 Aligned_cols=129 Identities=18% Similarity=0.181 Sum_probs=91.9
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 218 EKLKIEEEE-RKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHL 296 (379)
Q Consensus 218 el~~Le~EE-~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qL 296 (379)
....++++. +.+..++.+.|.+...|..|.+.++.....|.++++.+-.++..-+-++...+.+...+..++++.+.+|
T Consensus 380 ~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l 459 (1074)
T KOG0250|consen 380 QIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEEL 459 (1074)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444554 5566667777777777777777777777777777777777777777777777777888889999999999
Q ss_pred HHHhccccccCceeeeecCCceeecccccCCCCCCCCChhhHHHHHHHHHHHHHHHHhhcCCCcc-eeEEeccceeeeec
Q 016990 297 ELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFP-YPFFTSLCFLVIVD 375 (379)
Q Consensus 297 dkLrkTNV~nd~F~I~hdG~fGTINgfRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~kl~~~Fq-YrLvp~gs~~~~~~ 375 (379)
..|++++-=-- -.| |. ++.-||.+|-+.. -.|+ =-+=|||+|=++++
T Consensus 460 ~~lk~~k~dkv-------s~F--------G~----------------~m~~lL~~I~r~~-~~f~~~P~GPlG~~Vtl~~ 507 (1074)
T KOG0250|consen 460 KDLKKTKTDKV-------SAF--------GP----------------NMPQLLRAIERRK-RRFQTPPKGPLGKYVTLKE 507 (1074)
T ss_pred HHHHhcccchh-------hhc--------ch----------------hhHHHHHHHHHHH-hcCCCCCCCCccceeEecC
Confidence 99998752100 112 32 4667888888863 3456 45669999999999
Q ss_pred CcC
Q 016990 376 GRL 378 (379)
Q Consensus 376 ~~~ 378 (379)
||.
T Consensus 508 ~KW 510 (1074)
T KOG0250|consen 508 PKW 510 (1074)
T ss_pred cHH
Confidence 973
No 7
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.91 E-value=0.043 Score=53.30 Aligned_cols=29 Identities=28% Similarity=0.367 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 016990 177 LSDKLDKEVDDVTRDIEAYEACLQRLEGE 205 (379)
Q Consensus 177 Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~ 205 (379)
.|+.+|.+++.+.-.++.|..+|++++.+
T Consensus 11 ~iq~lD~e~~rl~~~~~~~~~~l~k~~~e 39 (239)
T COG1579 11 AIQKLDLEKDRLEPRIKEIRKALKKAKAE 39 (239)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 45667777777777777777777766543
No 8
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.64 E-value=0.08 Score=59.36 Aligned_cols=107 Identities=17% Similarity=0.225 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc----cCc
Q 016990 233 IEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVL----NDA 308 (379)
Q Consensus 233 LeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrkTNV~----nd~ 308 (379)
+.+++++...+..++..++.+...+...-..++...+.++.++..+.+++..+..++.......+.++..+.. ...
T Consensus 436 ~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~i~~~ 515 (1164)
T TIGR02169 436 INELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEV 515 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence 3333333444444444444444444444445555556565555555555555555554444443333321100 011
Q ss_pred eeeeecCCceeecccccCCCCCCCCCh-hhHHHHHHH
Q 016990 309 FPIWHDGEFGTINNFRLGRLPKIPVEW-DEINAAWGQ 344 (379)
Q Consensus 309 F~I~hdG~fGTINgfRLGrlp~~~V~W-~EINAAwGQ 344 (379)
+.-...|.+| +||.+-.++-.| .=|-+|+|.
T Consensus 516 ~~~~~~g~~g-----~l~dli~v~~~y~~Aie~~lg~ 547 (1164)
T TIGR02169 516 LKASIQGVHG-----TVAQLGSVGERYATAIEVAAGN 547 (1164)
T ss_pred HhcCCCCcee-----cHHHhcCcCHHHHHHHHHHhhh
Confidence 1000123333 567766666555 346666774
No 9
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=96.61 E-value=0.051 Score=54.34 Aligned_cols=171 Identities=20% Similarity=0.256 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 189 TRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEF 268 (379)
Q Consensus 189 ~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~ 268 (379)
..+.+.+..-++.++.+ ++.+.+++.+||.|..++.++|.+++.+.++++++......+...+..+-.++-.+.
T Consensus 42 ~~~~~~~~~el~~le~E------e~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~ 115 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQE------EEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEER 115 (314)
T ss_dssp HH--HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666643 456778888899999999999999999888888777766666655554444555555
Q ss_pred HHHHHHHHHHHHHHHHH---------------------------------------HHHHHHHHHHHHHH-hccccccCc
Q 016990 269 NNFQFQLIAHQEERDAI---------------------------------------SSKIEVSQAHLELL-KRTNVLNDA 308 (379)
Q Consensus 269 n~~q~qL~~~~eE~~sl---------------------------------------~~q~~~~~~qLdkL-rkTNV~nd~ 308 (379)
..+..+.....++++.| ++..-++---|.-| ++.|+=-..
T Consensus 116 ~sl~~q~~~~~~~L~~L~ktNv~n~~F~I~hdG~fGTINGlRLGrl~~~~V~W~EINAA~Gq~~LLL~~la~~l~~~f~~ 195 (314)
T PF04111_consen 116 DSLKNQYEYASNQLDRLRKTNVYNDTFHIWHDGPFGTINGLRLGRLPNVPVEWNEINAAWGQTALLLQTLAKKLNFKFQR 195 (314)
T ss_dssp HHHHHHHHHHHHHHHCHHT--TTTTT--EEEETTEEEETTEEE--BTTB---HHHHHHHHHHHHHHHHHHHHHCT---SS
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhceeeEeecCCeeeECCeeeccCCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 55555555555555442 22222222223333 344543355
Q ss_pred eeeeecCCceeecccccCC-------CCC------CCCChhhHHHHHHHHHHHHHHHHhhcC------CCcceeEE
Q 016990 309 FPIWHDGEFGTINNFRLGR-------LPK------IPVEWDEINAAWGQACLLLHTMCQYFR------PKFPYPFF 365 (379)
Q Consensus 309 F~I~hdG~fGTINgfRLGr-------lp~------~~V~W~EINAAwGQ~~LLL~tla~kl~------~~FqYrLv 365 (379)
|.|-.-|.|-+|=-+.-+. ..+ ..-.+...|.|+--.+-+|.-++..+. +++-|+|.
T Consensus 196 y~l~P~Gs~S~I~~~~~~~~~~~~~ly~~~~~~~~~~f~~~~Fd~am~~~L~~~~q~~~~~~~~~~~~~~lPy~i~ 271 (314)
T PF04111_consen 196 YRLVPMGSFSKIEKLEGDKDKTTYPLYSSGSFSLGRLFSSRKFDKAMVAFLDCLQQLAEFVEKRDPQSFELPYKID 271 (314)
T ss_dssp EEEE--GGG-EEEECS---TCEEEESS--SS----GGG--SHHHHHHHHHHHHHHHHHHHHHHHHH-----SS-EC
T ss_pred ceeEecCCCCEEEEeccCCCCeEEecccCCCchhhhhhhhcchHHHHHHHHHHHHHHHHHHHhcCCcccccceecc
Confidence 7777777777765554211 011 124688899998877777777776543 44458773
No 10
>PRK03918 chromosome segregation protein; Provisional
Probab=96.32 E-value=0.24 Score=54.65 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016990 263 RYWQEFNNFQFQLIAHQEERDAI 285 (379)
Q Consensus 263 ~~w~e~n~~q~qL~~~~eE~~sl 285 (379)
.|+..++.++.++..++.+...+
T Consensus 304 ~l~~~~~~l~~~~~~l~~~~~~l 326 (880)
T PRK03918 304 EYLDELREIEKRLSRLEEEINGI 326 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555554444444443
No 11
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=96.26 E-value=0.33 Score=44.23 Aligned_cols=98 Identities=20% Similarity=0.317 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 176 VLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (379)
Q Consensus 176 ~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~ 255 (379)
..+..+.+++++.++.......++..++... ....+.+...+++...+....+.+.++..++.+++.+.+.+..
T Consensus 88 ~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~ 161 (191)
T PF04156_consen 88 QQLQQLQEELDQLQERIQELESELEKLKEDL------QELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQ 161 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555444444445544443321 1112333344555555556666666666655555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 256 RFKELEERYWQEFNNFQFQLIAHQ 279 (379)
Q Consensus 256 ~L~eeEe~~w~e~n~~q~qL~~~~ 279 (379)
.+...-++.+..++.++..+.+.+
T Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~~ 185 (191)
T PF04156_consen 162 ELRSQLERLQENLQQLEEKIQELQ 185 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555554444333
No 12
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.11 E-value=0.12 Score=59.70 Aligned_cols=96 Identities=20% Similarity=0.316 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCce---eeeecCC
Q 016990 240 NAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAF---PIWHDGE 316 (379)
Q Consensus 240 ~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrkTNV~nd~F---~I~hdG~ 316 (379)
.+.+..++..++.....+.+.-...|+++...+..+..+..+..++..++......... .+..-.+. .....|.
T Consensus 441 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~Gv 517 (1163)
T COG1196 441 LEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRA---SQGVRAVLEALESGLPGV 517 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhHHHHHHHHhccCCCc
Confidence 33344444444444444444445666777777666666666666665555544443332 11001111 1123456
Q ss_pred ceeecccccCCCCCCCCChhh-HHHHHH
Q 016990 317 FGTINNFRLGRLPKIPVEWDE-INAAWG 343 (379)
Q Consensus 317 fGTINgfRLGrlp~~~V~W~E-INAAwG 343 (379)
||+ +|-+-.++..|.- |=+|+|
T Consensus 518 ~G~-----v~~li~v~~~y~~Aie~alG 540 (1163)
T COG1196 518 YGP-----VAELIKVKEKYETALEAALG 540 (1163)
T ss_pred cch-----HHHhcCcChHHHHHHHHHcc
Confidence 664 4445455667776 777777
No 13
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.10 E-value=0.39 Score=48.31 Aligned_cols=128 Identities=13% Similarity=0.211 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHH-----HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 176 VLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEA-----DFLK-------EKLKIEEEERKLEAAIEETEKQNAEV 243 (379)
Q Consensus 176 ~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee-----~l~~-------el~~Le~EE~~L~~eLeelEkE~~~l 243 (379)
.-++.|++++..++.|......-..+|..++...-..+ +..+ +...|..|..+...+......|...|
T Consensus 160 ~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~L 239 (306)
T PF04849_consen 160 IQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSL 239 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999998888877777765432110000 0111 12223333333333333334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 016990 244 NAELKELELKSKRFKELEERYW-------QEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTN 303 (379)
Q Consensus 244 ~~el~~le~e~~~L~eeEe~~w-------~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrkTN 303 (379)
-.++.+++.+.+.+-.+-++.- ..-+.++.++.+++++..-..+.+.-++.+|..||+.|
T Consensus 240 lsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR~~~ 306 (306)
T PF04849_consen 240 LSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLRKRT 306 (306)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 4444444444333322222222 22344555666666666666666777999999999876
No 14
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.09 E-value=0.18 Score=52.69 Aligned_cols=13 Identities=23% Similarity=0.652 Sum_probs=8.2
Q ss_pred CCcchHHHHHHHH
Q 016990 166 EQPLCLECMRVLS 178 (379)
Q Consensus 166 DhPLC~ECtd~Ll 178 (379)
.++.|.-|...+-
T Consensus 283 ~~~~Cp~C~~~~~ 295 (562)
T PHA02562 283 KGGVCPTCTQQIS 295 (562)
T ss_pred CCCCCCCCCCcCC
Confidence 3667887765553
No 15
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.08 E-value=0.39 Score=53.99 Aligned_cols=17 Identities=18% Similarity=0.477 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016990 178 SDKLDKEVDDVTRDIEA 194 (379)
Q Consensus 178 le~Ld~qle~~~~E~d~ 194 (379)
+..++.++...+.+...
T Consensus 260 l~~~~~~~~~~~~~~~~ 276 (1164)
T TIGR02169 260 ISELEKRLEEIEQLLEE 276 (1164)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444333
No 16
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.75 E-value=0.38 Score=55.52 Aligned_cols=96 Identities=21% Similarity=0.315 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 016990 225 EERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNV 304 (379)
Q Consensus 225 EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrkTNV 304 (379)
...+...+|..++.+...+..++.+.+++...+..++..+-...+.+...+.+......+...+- ....-|-+|+..
T Consensus 536 ~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~-kVl~al~r~kes-- 612 (1293)
T KOG0996|consen 536 SLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRN-KVLDALMRLKES-- 612 (1293)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHHc--
Confidence 33344455666666666677777777777777777777777777666666554444333322221 222335555554
Q ss_pred ccCceeeeecCCceeeccc--ccCCCCCCCCChh
Q 016990 305 LNDAFPIWHDGEFGTINNF--RLGRLPKIPVEWD 336 (379)
Q Consensus 305 ~nd~F~I~hdG~fGTINgf--RLGrlp~~~V~W~ 336 (379)
|-|||| |||-|-.++.-|+
T Consensus 613 -------------G~i~Gf~GRLGDLg~Id~kYD 633 (1293)
T KOG0996|consen 613 -------------GRIPGFYGRLGDLGAIDEKYD 633 (1293)
T ss_pred -------------CCCCccccccccccccchHHH
Confidence 345555 7777766555444
No 17
>PRK11637 AmiB activator; Provisional
Probab=95.66 E-value=0.27 Score=50.60 Aligned_cols=74 Identities=19% Similarity=0.304 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 179 DKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (379)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~ 258 (379)
+.+++++++++++++....-++.++.+. .++..++..++.+...+..+|.+++.+...++++|..++.+...++
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~------~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q 116 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQR------ASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLE 116 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778887777777776666555432 2233344444444444455555555555555555554444443333
No 18
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.62 E-value=0.95 Score=44.15 Aligned_cols=88 Identities=16% Similarity=0.219 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 016990 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK----RFKELEERYWQEFNNFQFQLIAHQEERDAISSKIE- 290 (379)
Q Consensus 216 ~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~----~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~- 290 (379)
..|+..++.....|..+|.++..+.+.+..++..++.+.. .+.+.+..+--+......+...+..++..|...+.
T Consensus 95 ~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~~ 174 (239)
T COG1579 95 NIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLDP 174 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 3444555555555666666666666666655555554332 22233333333334444444444555555555443
Q ss_pred HHHHHHHHHhccc
Q 016990 291 VSQAHLELLKRTN 303 (379)
Q Consensus 291 ~~~~qLdkLrkTN 303 (379)
......+++++.+
T Consensus 175 ell~~yeri~~~~ 187 (239)
T COG1579 175 ELLSEYERIRKNK 187 (239)
T ss_pred HHHHHHHHHHhcC
Confidence 3445566776644
No 19
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.47 E-value=1.2 Score=49.89 Aligned_cols=7 Identities=43% Similarity=0.529 Sum_probs=4.3
Q ss_pred eEEeecc
Q 016990 31 LCIVGVD 37 (379)
Q Consensus 31 l~i~g~d 37 (379)
.+|||+-
T Consensus 26 ~~i~G~N 32 (1179)
T TIGR02168 26 TGIVGPN 32 (1179)
T ss_pred EEEECCC
Confidence 4677764
No 20
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.32 E-value=1.1 Score=51.04 Aligned_cols=30 Identities=20% Similarity=0.350 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 170 CLECMRVLSDKLDKEVDDVTRDIEAYEACLQ 200 (379)
Q Consensus 170 C~ECtd~Lle~Ld~qle~~~~E~d~Y~~fL~ 200 (379)
|..|+..| ..|..+.+...++...|..+..
T Consensus 197 ~~~~~~~l-~~L~~~~~~l~kdVE~~rer~~ 226 (1072)
T KOG0979|consen 197 LTTKTEKL-NRLEDEIDKLEKDVERVRERER 226 (1072)
T ss_pred HHHhHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 44555544 3466666666666666654444
No 21
>PRK11637 AmiB activator; Provisional
Probab=95.27 E-value=1.1 Score=46.19 Aligned_cols=55 Identities=13% Similarity=0.237 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLI 276 (379)
Q Consensus 222 Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~ 276 (379)
+....++|..+..+++.+++++...+.+++.+...|+.+..+.=..+..++.++.
T Consensus 175 l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~ 229 (428)
T PRK11637 175 LKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQ 229 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555555554444444444444444433333333333333
No 22
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.20 E-value=2.1 Score=42.89 Aligned_cols=29 Identities=17% Similarity=0.196 Sum_probs=21.1
Q ss_pred CCccchHHHHHHHHHhhcCCCCcCCcchH
Q 016990 143 SGFHSTITVLKRAFEIATSQTQVEQPLCL 171 (379)
Q Consensus 143 ~~lss~i~~l~~lFdIlSs~s~IDhPLC~ 171 (379)
..|.+.|.-..++|.=+...+..+.|-..
T Consensus 78 ~EL~~~I~egr~~~~~~E~~~~~~nPpLf 106 (325)
T PF08317_consen 78 RELKKYISEGRQIFEEIEEETYESNPPLF 106 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence 44667777778888777777777777765
No 23
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=94.92 E-value=1.6 Score=41.74 Aligned_cols=80 Identities=19% Similarity=0.285 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016990 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (379)
Q Consensus 222 Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrk 301 (379)
++.+..+.+..++.+|.....+..+|..+....+.++..+.++-.....|.-++..+...+..+..+++.+.....+|.+
T Consensus 125 ~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~ 204 (237)
T PF00261_consen 125 LEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEK 204 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555555555555555555555555555555555555555555555555555555555555555543
No 24
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=94.89 E-value=3.8 Score=39.33 Aligned_cols=60 Identities=17% Similarity=0.305 Sum_probs=43.2
Q ss_pred HHHHHhccccccCceeeeecCCceeecccccCCCCC---------------CCCChhhHHHHHHHHHHHHHHHHhhc
Q 016990 295 HLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPK---------------IPVEWDEINAAWGQACLLLHTMCQYF 356 (379)
Q Consensus 295 qLdkLrkTNV~nd~F~I~hdG~fGTINgfRLGrlp~---------------~~V~W~EINAAwGQ~~LLL~tla~kl 356 (379)
..+-=+...+|..+..| ||.=-+.+=|||||+-- ..=.|..+...+...+--..-||+|-
T Consensus 161 E~~yg~~i~~~~~~i~~--dG~~~~V~~LrlGr~~l~~~t~Dg~~~g~~~~~~~~W~~l~~~~~~~i~~ai~ia~kq 235 (251)
T PF11932_consen 161 EMEYGRTIEVYQGTITL--DGEERQVDFLRLGRVALYYQTLDGSQAGVWDPATGQWQWLPDSYRREIRKAIRIARKQ 235 (251)
T ss_pred HHHhCCceeEEEEEEeE--CCeEEEEEEEeecchhheeECCCccceeeecCCCCCCeECCHHHHHHHHHHHHHHhCC
Confidence 33434455666666655 89888999999999741 23368888888888888888888873
No 25
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.88 E-value=0.9 Score=47.55 Aligned_cols=85 Identities=19% Similarity=0.249 Sum_probs=59.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 167 QPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAE 246 (379)
Q Consensus 167 hPLC~ECtd~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~e 246 (379)
+|.|..| ....+++++++.+|+..-..-+....++ -..+.+++..++.+...++.+|.+.+.++.++.+.
T Consensus 26 ~~~~s~s----~~a~~~~l~q~q~ei~~~~~~i~~~~~~------~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~ 95 (420)
T COG4942 26 VLAAAFS----AAADDKQLKQIQKEIAALEKKIREQQDQ------RAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQ 95 (420)
T ss_pred ccccchh----HHhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 5667777 4445577888777776666555544332 24566777778888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHH
Q 016990 247 LKELELKSKRFKELE 261 (379)
Q Consensus 247 l~~le~e~~~L~eeE 261 (379)
|.+++.....|..++
T Consensus 96 I~~~~~~l~~l~~q~ 110 (420)
T COG4942 96 IADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888877776666555
No 26
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.86 E-value=1.1 Score=47.03 Aligned_cols=25 Identities=20% Similarity=0.497 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 016990 180 KLDKEVDDVTRDIEAYEACLQRLEG 204 (379)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~L~~ 204 (379)
.++.++...+.+.+.|...+..++.
T Consensus 185 ~l~~~i~~l~~~i~~~~~~i~~~~~ 209 (562)
T PHA02562 185 TLDMKIDHIQQQIKTYNKNIEEQRK 209 (562)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3344444444455545555555543
No 27
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.74 E-value=1.7 Score=47.03 Aligned_cols=14 Identities=29% Similarity=0.249 Sum_probs=7.2
Q ss_pred cCCCCCccceEEEe
Q 016990 101 QSGKAMDESFVVIY 114 (379)
Q Consensus 101 ~~~~~~~eSfV~l~ 114 (379)
-.++.-.+=|.|.|
T Consensus 81 yLPk~~~e~YqfcY 94 (546)
T PF07888_consen 81 YLPKDDDEFYQFCY 94 (546)
T ss_pred cCCCCCCCeEEEEE
Confidence 33333345577766
No 28
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.68 E-value=1.5 Score=50.43 Aligned_cols=68 Identities=24% Similarity=0.236 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAI 285 (379)
Q Consensus 218 el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl 285 (379)
++.+++.+.+.|.++++.+|.+...|.+++.++..+....+++-...-.....++..+.....++..+
T Consensus 395 ~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~l 462 (1074)
T KOG0250|consen 395 ELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDL 462 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555556666666666666666666655555433222221122244455555554444444443
No 29
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=94.66 E-value=3.4 Score=37.63 Aligned_cols=66 Identities=17% Similarity=0.401 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 180 KLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (379)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le 251 (379)
..++++..+.+|.+.....+..+..+- .++.........+.+...+++..++...+.+.+++.++.
T Consensus 85 ~~~~~l~~l~~el~~l~~~~~~~~~~l------~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 85 ELQQQLQQLQEELDQLQERIQELESEL------EKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555544443211 111222222233334444444455555544444444444
No 30
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=94.57 E-value=1.8 Score=46.42 Aligned_cols=125 Identities=10% Similarity=0.104 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 187 DVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQ 266 (379)
Q Consensus 187 ~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~ 266 (379)
-.++|-..|--|+++|..-...+ ..+.+++...-+|..++.+++..|+.++..++++++.+.-|.+.+++.-..|-.
T Consensus 192 ~~~keq~~y~~~~KelrdtN~q~---~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~d 268 (596)
T KOG4360|consen 192 YEEKEQQLYGDCVKELRDTNTQA---RSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKD 268 (596)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34667778888888876432211 223455555556666666677777777777777777666666666655555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCceeeeec
Q 016990 267 EFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHD 314 (379)
Q Consensus 267 e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrkTNV~nd~F~I~hd 314 (379)
.-..++.++.+++++..-....++-++..|..|+.+...+....-.|+
T Consensus 269 a~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs~~~p~~~s~~~~~ 316 (596)
T KOG4360|consen 269 AQRQLTAELEELEDKYAECMQMLHEAEEELKCLRSCDAPKLISQEALS 316 (596)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHH
Confidence 555556666666666666677778899999999999988887765444
No 31
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.48 E-value=2.1 Score=46.29 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 016990 274 QLIAHQEERDAISSKIEVSQAHLELLKRT 302 (379)
Q Consensus 274 qL~~~~eE~~sl~~q~~~~~~qLdkLrkT 302 (379)
+...+.+++..+..++..++.+...|++-
T Consensus 284 e~e~LkeqLr~~qe~lqaSqq~~~~L~~E 312 (546)
T PF07888_consen 284 ENEALKEQLRSAQEQLQASQQEAELLRKE 312 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555555555443
No 32
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.47 E-value=2 Score=47.78 Aligned_cols=169 Identities=15% Similarity=0.199 Sum_probs=92.4
Q ss_pred cCCcchHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 165 VEQPLCLECMRVLSDKLDKEVD-------DVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETE 237 (379)
Q Consensus 165 IDhPLC~ECtd~Lle~Ld~qle-------~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~el~~Le~EE~~L~~eLeelE 237 (379)
-..|.=.||...|.+..+.=-+ .+..|.+.....|+...++... .-.++.++++.+.+.-++|...++++.
T Consensus 529 ~~~p~~~E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~--~L~~l~e~~~~l~~~ae~LaeR~e~a~ 606 (717)
T PF10168_consen 529 SSSPSPQECLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLK--ELQELQEERKSLRESAEKLAERYEEAK 606 (717)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678999888754332211 2222333333333322211111 112334444445555555566666666
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCceeeee
Q 016990 238 KQNAEVNAELKELELKS----KRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWH 313 (379)
Q Consensus 238 kE~~~l~~el~~le~e~----~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrkTNV~nd~F~I~h 313 (379)
...+.+.+.++.+-... -.+-.-|++|-+|...++.++..++...+.+++++++.+.|++ ++.+.-.
T Consensus 607 d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~--~~~~~~~------- 677 (717)
T PF10168_consen 607 DKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIE--SQKSPKK------- 677 (717)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccC-------
Confidence 55555555444443322 1245667788888888888877777777777777777666666 2222221
Q ss_pred cCCceeecccccCCCCCCCCChhhHHHHHHHHHHHHHHHHhhc
Q 016990 314 DGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYF 356 (379)
Q Consensus 314 dG~fGTINgfRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~kl 356 (379)
.+|+ +| .--+..|-.++.|-.--+..+.+++
T Consensus 678 ----~s~~------L~--~~Q~~~I~~iL~~~~~~I~~~v~~i 708 (717)
T PF10168_consen 678 ----KSIV------LS--ESQKRTIKEILKQQGEEIDELVKQI 708 (717)
T ss_pred ----CCcc------CC--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 22 2568888888888877777766654
No 33
>PRK04863 mukB cell division protein MukB; Provisional
Probab=94.46 E-value=1.7 Score=52.00 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 016990 269 NNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLN 306 (379)
Q Consensus 269 n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrkTNV~n 306 (379)
..++.++.+.+.+.+.+..+....+..+.+|.+.+-++
T Consensus 393 eeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~ 430 (1486)
T PRK04863 393 DELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLC 430 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444444445555544444
No 34
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=94.44 E-value=2.5 Score=49.16 Aligned_cols=53 Identities=15% Similarity=0.180 Sum_probs=31.4
Q ss_pred chHHHHHHHHHhhcCCCCcCC-------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 147 STITVLKRAFEIATSQTQVEQ-------------PLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQ 200 (379)
Q Consensus 147 s~i~~l~~lFdIlSs~s~IDh-------------PLC~ECtd~Lle~Ld~qle~~~~E~d~Y~~fL~ 200 (379)
.+..-...||+-.++-+..+. --|..| +.++..+..+++.++++++.-.+|.+
T Consensus 152 ~kp~err~iiEEaaGv~~y~~r~~ea~~~L~~~~~nl~~~-~~~~~el~~~l~~L~~q~~~a~~y~~ 217 (1163)
T COG1196 152 AKPEERRKLIEEAAGVSKYKERKEEAERKLERTEENLERL-EDLLEELEKQLEKLERQAEKAERYQE 217 (1163)
T ss_pred CCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445556666655433221 125553 44566688888888888887666655
No 35
>PRK09039 hypothetical protein; Validated
Probab=94.41 E-value=2.6 Score=42.71 Aligned_cols=32 Identities=6% Similarity=-0.025 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhhcCCCcceeEEeccceee
Q 016990 341 AWGQACLLLHTMCQYFRPKFPYPFFTSLCFLV 372 (379)
Q Consensus 341 AwGQ~~LLL~tla~kl~~~FqYrLvp~gs~~~ 372 (379)
.|.+++-.|..+.++......|.|.--||...
T Consensus 242 ~L~~ia~~l~~~~~~~p~~i~~~I~I~GHTD~ 273 (343)
T PRK09039 242 EIAKLAAALIELAKEIPPEINWVLRVDGHTDN 273 (343)
T ss_pred HHHHHHHHHHHhhhccCCcCCeeEEEEEecCC
Confidence 35555555555544433223355656666554
No 36
>PRK02224 chromosome segregation protein; Provisional
Probab=94.31 E-value=2 Score=47.75 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 271 FQFQLIAHQEERDAISSKIEVSQAHL 296 (379)
Q Consensus 271 ~q~qL~~~~eE~~sl~~q~~~~~~qL 296 (379)
+..++.....++..+..+|......+
T Consensus 665 l~~~l~~~~~~~~~l~~~i~~~~~~~ 690 (880)
T PRK02224 665 VEEKLDELREERDDLQAEIGAVENEL 690 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333555555555554433333
No 37
>PRK02224 chromosome segregation protein; Provisional
Probab=94.27 E-value=1.4 Score=48.91 Aligned_cols=25 Identities=16% Similarity=0.074 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 275 LIAHQEERDAISSKIEVSQAHLELL 299 (379)
Q Consensus 275 L~~~~eE~~sl~~q~~~~~~qLdkL 299 (379)
+.+.+.+...+...+.-....++.|
T Consensus 594 ~~~~~~~i~~~~~~~~~~~~~~~~l 618 (880)
T PRK02224 594 IRTLLAAIADAEDEIERLREKREAL 618 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444
No 38
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=94.24 E-value=2.2 Score=42.54 Aligned_cols=21 Identities=14% Similarity=0.215 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 016990 280 EERDAISSKIEVSQAHLELLK 300 (379)
Q Consensus 280 eE~~sl~~q~~~~~~qLdkLr 300 (379)
+++..+..++..++.+++.++
T Consensus 246 ~~l~~~~~~l~~~~~~l~~~~ 266 (423)
T TIGR01843 246 EELTEAQARLAELRERLNKAR 266 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666666543
No 39
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.23 E-value=6.4 Score=40.43 Aligned_cols=54 Identities=19% Similarity=0.289 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 190 RDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKE 249 (379)
Q Consensus 190 ~E~d~Y~~fL~~L~~~~~~~~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~ 249 (379)
+|.+.|......|+. .++++.+-..+|+.++++|++++..|.++.+.|..-.++
T Consensus 225 eeme~~~aeq~slkR------t~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 225 EEMERLQAEQESLKR------TEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHh------hHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 344444444444432 245555556667777777777777777777766655554
No 40
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=94.23 E-value=4.4 Score=41.16 Aligned_cols=129 Identities=19% Similarity=0.252 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhc-----ccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEAR-----DVL-SEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAEL 247 (379)
Q Consensus 174 td~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~-----~~~-~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el 247 (379)
...-++.|.+++.++..|++.+..-+.+.+.... ..+ ..+++..+++++.+.-..|+..+..+-.|.+++..|.
T Consensus 84 L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ER 163 (319)
T PF09789_consen 84 LKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTER 163 (319)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445778999999999999999988887653221 111 2355667777777777778888888888888888887
Q ss_pred HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 016990 248 KELELKSKRFKELEE--------------RYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTN 303 (379)
Q Consensus 248 ~~le~e~~~L~eeEe--------------~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrkTN 303 (379)
...+.+..+|+.+-. ...-|=.-++-++...++|...+...+.-...-|++ ++.|
T Consensus 164 D~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~-k~~~ 232 (319)
T PF09789_consen 164 DAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALER-KRKK 232 (319)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccc
Confidence 777777777754321 111122223456888899999988888888888886 4444
No 41
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=94.07 E-value=5.8 Score=37.94 Aligned_cols=84 Identities=20% Similarity=0.317 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHL 296 (379)
Q Consensus 217 ~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qL 296 (379)
.++...+.--..+...+.+|+.++..+...++.++.......+.|..|=..+..+..++.+.....+..+........++
T Consensus 127 ~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~i 206 (237)
T PF00261_consen 127 QELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEI 206 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666777778888888888888888887776666666666777777777777666666666665555555555
Q ss_pred HHHh
Q 016990 297 ELLK 300 (379)
Q Consensus 297 dkLr 300 (379)
+.|.
T Consensus 207 d~le 210 (237)
T PF00261_consen 207 DRLE 210 (237)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 42
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=94.07 E-value=0.33 Score=47.21 Aligned_cols=71 Identities=20% Similarity=0.274 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISS 287 (379)
Q Consensus 217 ~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~ 287 (379)
..++++.+|...|..+++++|.+..+++..++.++.+..+|++.-+..-.+|.+++..+.++.+.....+.
T Consensus 142 ekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e~ 212 (290)
T COG4026 142 EKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPEE 212 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccchHH
Confidence 33555677778899999999999999999999999999999888888888888898888888877665443
No 43
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=94.05 E-value=2.8 Score=40.54 Aligned_cols=40 Identities=13% Similarity=0.170 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (379)
Q Consensus 217 ~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~ 256 (379)
+|+..|..|.....++|..+......++..|++++.+..+
T Consensus 39 kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~ 78 (230)
T PF10146_consen 39 KEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNK 78 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444333
No 44
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.05 E-value=5.4 Score=37.60 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016990 177 LSDKLDKEVDDVTRDIEAYEACLQRLE 203 (379)
Q Consensus 177 Lle~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (379)
||..|+.++.+..+.......-+..+.
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~ 54 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEIS 54 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666665554444444444433
No 45
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=93.98 E-value=1.1 Score=41.37 Aligned_cols=17 Identities=0% Similarity=0.235 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016990 177 LSDKLDKEVDDVTRDIE 193 (379)
Q Consensus 177 Lle~Ld~qle~~~~E~d 193 (379)
+-.+++..++.+.++++
T Consensus 55 VRkqY~~~i~~AKkqRk 71 (161)
T TIGR02894 55 VRKQYEEAIELAKKQRK 71 (161)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45566666666666664
No 46
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.72 E-value=7.8 Score=39.05 Aligned_cols=157 Identities=16% Similarity=0.193 Sum_probs=82.5
Q ss_pred ccchHHHHHHHHHhhcCCCCcCCcch-HHHH---HHHHHHHHHHHHH------HHHHHHHHHHHHHHHhchhc---cc--
Q 016990 145 FHSTITVLKRAFEIATSQTQVEQPLC-LECM---RVLSDKLDKEVDD------VTRDIEAYEACLQRLEGEAR---DV-- 209 (379)
Q Consensus 145 lss~i~~l~~lFdIlSs~s~IDhPLC-~ECt---d~Lle~Ld~qle~------~~~E~d~Y~~fL~~L~~~~~---~~-- 209 (379)
|..+|.--.++|.=+...+.++.|.= .|=. .-.-..|+.|+.- ++....=|..=.+-+++-.. ..
T Consensus 75 L~~~I~egr~~~~~~E~et~~~nPpLF~EY~~a~~d~r~lm~~Qf~lvK~~aRl~ak~~WYeWR~kllegLk~~L~~~~~ 154 (312)
T smart00787 75 LKKYISEGRDLFKEIEEETLINNPPLFKEYFSASPDVKLLMDKQFQLVKTFARLEAKKMWYEWRMKLLEGLKEGLDENLE 154 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777888888888888888752 2221 2223334444443 34455556544333322100 00
Q ss_pred -C-CH-HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 210 -L-SE-ADFLK-------EKLKIEEEERKLEAAIEETEKQNAEVNA----ELKELELKSKRFKELEERYWQEFNNFQFQL 275 (379)
Q Consensus 210 -~-~e-e~l~~-------el~~Le~EE~~L~~eLeelEkE~~~l~~----el~~le~e~~~L~eeEe~~w~e~n~~q~qL 275 (379)
+ .+ +.+.+ -+-.+.+....|..++..|.+-..+++. ++..++.+...++.+-...-++...++.++
T Consensus 155 ~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l 234 (312)
T smart00787 155 GLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEEL 234 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00 01111 1112333444445555444444444322 555566555555555556666677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016990 276 IAHQEERDAISSKIEVSQAHLELLKR 301 (379)
Q Consensus 276 ~~~~eE~~sl~~q~~~~~~qLdkLrk 301 (379)
.++........++..-.+.++..+++
T Consensus 235 ~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 235 QELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777766666666666665
No 47
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=93.72 E-value=7 Score=38.98 Aligned_cols=22 Identities=14% Similarity=0.219 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016990 179 DKLDKEVDDVTRDIEAYEACLQ 200 (379)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~ 200 (379)
..++.++..+..+...+..+++
T Consensus 84 ~~l~~~~~~l~a~~~~l~~~~~ 105 (423)
T TIGR01843 84 AELESQVLRLEAEVARLRAEAD 105 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 3455555555555555554444
No 48
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.70 E-value=4 Score=44.32 Aligned_cols=65 Identities=23% Similarity=0.249 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 223 EEEERKLEAAIEETEKQNAEVNAELKELELKS----------KRFKELEERYWQEFNNFQFQLIAHQEERDAISS 287 (379)
Q Consensus 223 e~EE~~L~~eLeelEkE~~~l~~el~~le~e~----------~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~ 287 (379)
+...+.|..|+++.|.|++.+.++..+|+... ++...+-++.-++.|..+-++..+..+...++.
T Consensus 293 ~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l 367 (581)
T KOG0995|consen 293 EKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKL 367 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33444444444444444444444444444322 233333334555555555555555444444333
No 49
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=93.48 E-value=2.5 Score=48.62 Aligned_cols=71 Identities=18% Similarity=0.208 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISS 287 (379)
Q Consensus 217 ~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~ 287 (379)
+++.+++.....-..+|+.++.+..++...|+..+.-..+++..|...-+.-..++..+...++...++-.
T Consensus 483 ~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~ 553 (1041)
T KOG0243|consen 483 EEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFE 553 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555555555544444445555555555555555555555555555554433
No 50
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.42 E-value=1.4 Score=41.89 Aligned_cols=80 Identities=10% Similarity=0.140 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 177 LSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (379)
Q Consensus 177 Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~ 256 (379)
.+..|++|+..++.+.+.-..-++.. ..++...+...+.+..+|.++.++|.++.+.+.+++..++.+..+
T Consensus 94 rlp~le~el~~l~~~l~~~~~~~~~~---------~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 94 RVPDLENQVKTLTDKLNNIDNTWNQR---------TAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDD 164 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777776665444422221110 122333333344444445555555555555555565555555555
Q ss_pred HHHHHHHHH
Q 016990 257 FKELEERYW 265 (379)
Q Consensus 257 L~eeEe~~w 265 (379)
+++.+..-|
T Consensus 165 ~~~~~~~~w 173 (206)
T PRK10884 165 KQRTIIMQW 173 (206)
T ss_pred HHHHHHHHH
Confidence 555554444
No 51
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=93.35 E-value=2.7 Score=45.25 Aligned_cols=31 Identities=16% Similarity=0.227 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 170 CLECMRVLSDKLDKEVDDVTRDIEAYEACLQ 200 (379)
Q Consensus 170 C~ECtd~Lle~Ld~qle~~~~E~d~Y~~fL~ 200 (379)
..+=.+.+-+.+|.=++..++|..++....+
T Consensus 280 ~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek 310 (569)
T PRK04778 280 AEEKNEEIQERIDQLYDILEREVKARKYVEK 310 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666677777777778888888888765544
No 52
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=93.23 E-value=6 Score=35.47 Aligned_cols=65 Identities=26% Similarity=0.262 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016990 229 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (379)
Q Consensus 229 L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLr 300 (379)
|...|..||.+++..+..+.....+....+.-=. .|.++...+..+++..+.+|+-...++..++
T Consensus 78 l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae-------~~eRkv~~le~~~~~~E~k~eel~~k~~~~k 142 (143)
T PF12718_consen 78 LNRRIQLLEEELEEAEKKLKETTEKLREADVKAE-------HFERKVKALEQERDQWEEKYEELEEKYKEAK 142 (143)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhc
Confidence 4444444444444444444444433333322221 2333444444555555555555555544443
No 53
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=93.20 E-value=3.8 Score=42.57 Aligned_cols=27 Identities=15% Similarity=0.437 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016990 178 SDKLDKEVDDVTRDIEAYEACLQRLEG 204 (379)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~ 204 (379)
++.++.++..+..+...|+..++.+++
T Consensus 174 ~~~~~~~i~~~~~~~~~~~~~~~~~~~ 200 (457)
T TIGR01000 174 KAQLDQQISKTDQKLQDYQALKNAISN 200 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555566666666666666665544
No 54
>PRK04863 mukB cell division protein MukB; Provisional
Probab=93.13 E-value=2.7 Score=50.40 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 178 SDKLDKEVDDVTRDIEAYEACLQR 201 (379)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~ 201 (379)
+..+..++..++++++.+..|++.
T Consensus 316 L~ELe~rL~kLEkQaEkA~kyleL 339 (1486)
T PRK04863 316 LAELNEAESDLEQDYQAASDHLNL 339 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888888888888877664
No 55
>PF15285 BH3: Beclin-1 BH3 domain, Bcl-2-interacting; PDB: 3BL2_C 2P1L_H 3DVU_C 2PON_A.
Probab=93.13 E-value=0.031 Score=36.48 Aligned_cols=20 Identities=20% Similarity=0.368 Sum_probs=16.5
Q ss_pred CCccchHHHHHHHHHhhcCC
Q 016990 143 SGFHSTITVLKRAFEIATSQ 162 (379)
Q Consensus 143 ~~lss~i~~l~~lFdIlSs~ 162 (379)
.++|+|+++.+.+|||+|++
T Consensus 6 e~ls~rlkvtg~lfdimsGq 25 (25)
T PF15285_consen 6 ENLSRRLKVTGDLFDIMSGQ 25 (25)
T ss_dssp HHHHHHHHHHHHHHCCTT--
T ss_pred cccchhheecccccccccCC
Confidence 35899999999999999985
No 56
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.12 E-value=3.5 Score=44.85 Aligned_cols=63 Identities=21% Similarity=0.361 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 219 KLKIEEEERKLEAAIEETEKQNAEV--------------NAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEE 281 (379)
Q Consensus 219 l~~Le~EE~~L~~eLeelEkE~~~l--------------~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE 281 (379)
..+|+.|.+.++++|.....|++.+ +.+...++.+.+.++.-|.+...+|+.+.-+-+.+|..
T Consensus 109 I~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKq 185 (772)
T KOG0999|consen 109 ILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQ 185 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 4456666666666666655555443 33445556667777788888888888876655554443
No 57
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=93.08 E-value=7.3 Score=36.66 Aligned_cols=57 Identities=21% Similarity=0.265 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 234 EETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIE 290 (379)
Q Consensus 234 eelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~ 290 (379)
.++|.+..+++..|.+++.+...+...-+..+.+.+.++-......++...++.+++
T Consensus 127 ~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~ 183 (190)
T PF05266_consen 127 KELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQ 183 (190)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444445556666666666666666555555544
No 58
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.06 E-value=0.72 Score=42.79 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016990 179 DKLDKEVDDVTRDIEAYEACLQ 200 (379)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~ 200 (379)
-.+..++..+.+.+.....-|.
T Consensus 77 ~~l~~ELael~r~~~el~~~L~ 98 (194)
T PF08614_consen 77 AKLQEELAELYRSKGELAQQLV 98 (194)
T ss_dssp ----------------------
T ss_pred cccccccccccccccccccccc
Confidence 3455666665555544443333
No 59
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=93.01 E-value=5.5 Score=39.90 Aligned_cols=113 Identities=18% Similarity=0.285 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc----hhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 178 SDKLDKEVDDVTRDIEAYEACLQRLEG----EARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (379)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~----~~~~~~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e 253 (379)
|++|..|++.+.+|++.-+=-|+.|+. +...+ ++-..+...|+.|-..|...++.+|+.+..+..++.--+
T Consensus 20 IqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~---e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke-- 94 (307)
T PF10481_consen 20 IQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKV---EEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKE-- 94 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhH--
Confidence 678889999999988875555554432 11110 111123334566666777777777777777766544322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Q 016990 254 SKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLND 307 (379)
Q Consensus 254 ~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrkTNV~nd 307 (379)
.. +|-+.-||.......+.++..+.....+|+|.+..+.--+
T Consensus 95 -~q-----------v~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~ 136 (307)
T PF10481_consen 95 -SQ-----------VNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGD 136 (307)
T ss_pred -HH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 22 3334444555555555666666677777888888776444
No 60
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=92.95 E-value=6.6 Score=37.04 Aligned_cols=13 Identities=8% Similarity=0.504 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 016990 181 LDKEVDDVTRDIE 193 (379)
Q Consensus 181 Ld~qle~~~~E~d 193 (379)
++.+++++..|..
T Consensus 24 lq~~l~~l~~ENk 36 (194)
T PF15619_consen 24 LQRKLQELRKENK 36 (194)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 61
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=92.82 E-value=3.2 Score=40.74 Aligned_cols=103 Identities=25% Similarity=0.387 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---HHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 016990 213 ADFLKEKLKIEEEERKLEAAIEETE-KQNAEVNAELKELELKSKRFK---ELEE----RYWQEFNNFQFQLIAHQEERDA 284 (379)
Q Consensus 213 e~l~~el~~Le~EE~~L~~eLeelE-kE~~~l~~el~~le~e~~~L~---eeEe----~~w~e~n~~q~qL~~~~eE~~s 284 (379)
..+..|+.+--.+-+.|..++..++ .+..-++.+++.|..+..++. ++.. .|=-+.+++|..
T Consensus 160 d~l~~eLqkr~~~v~~l~~q~~k~~~~qv~~in~qlErLRL~krrlQl~g~Ld~~~q~~~~ae~seLq~r---------- 229 (289)
T COG4985 160 DPLERELQKRLLEVETLRDQVDKMVEQQVRVINSQLERLRLEKRRLQLNGQLDDEFQQHYVAEKSELQKR---------- 229 (289)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHH----------
Confidence 3445566655555566666766664 344557777777777665552 2222 233333333333
Q ss_pred HHHHHHHHHHHHHHHhccccccCceeeeecCCceeecccccCCCCCCCCChhhHHHHH
Q 016990 285 ISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAW 342 (379)
Q Consensus 285 l~~q~~~~~~qLdkLrkTNV~nd~F~I~hdG~fGTINgfRLGrlp~~~V~W~EINAAw 342 (379)
+...+.+|+.|+. -+|.-|-.|.|-. |+ .++|+-+|||-||
T Consensus 230 ----~~~l~~~L~~L~~--e~~r~~l~~~Dm~---------G~--~~~vpLsei~~aw 270 (289)
T COG4985 230 ----LAQLQTELDALRA--ELERQFLYLVDMQ---------GE--TVSVPLSEILDAW 270 (289)
T ss_pred ----HHHHHHHHHHHhh--hhhhceEEEEccC---------CC--EeeccHHHHHHhh
Confidence 3444444444443 2456677787732 23 2578999999998
No 62
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=92.74 E-value=6.4 Score=34.47 Aligned_cols=69 Identities=14% Similarity=0.284 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 231 AAIEETEKQNAEVNAELKELELKS----KRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (379)
Q Consensus 231 ~eLeelEkE~~~l~~el~~le~e~----~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkL 299 (379)
++|..+..+...+..++..++.+. ..|+..+...-.....++.++.+.....+.|..|....-.||+.|
T Consensus 59 ~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 59 KELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333344444444444444443332 233444443334455667777777777777777777777777764
No 63
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=92.71 E-value=0.51 Score=40.63 Aligned_cols=15 Identities=20% Similarity=0.580 Sum_probs=12.5
Q ss_pred cccCceeeeecCCcee
Q 016990 304 VLNDAFPIWHDGEFGT 319 (379)
Q Consensus 304 V~nd~F~I~hdG~fGT 319 (379)
+|++=|||.| -.||.
T Consensus 81 LY~EGFHICn-~~yG~ 95 (107)
T PF06156_consen 81 LYQEGFHICN-VHYGS 95 (107)
T ss_pred HHhcCeeeCc-HHhCC
Confidence 5999999987 67775
No 64
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=92.69 E-value=11 Score=38.29 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016990 178 SDKLDKEVDDVTRDIEAYE 196 (379)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~ 196 (379)
+..|+++...+..|.++|.
T Consensus 29 ~~sL~qen~~Lk~El~~ek 47 (310)
T PF09755_consen 29 IESLQQENRVLKRELETEK 47 (310)
T ss_pred HHHHHHHhHHHHHHHHHHH
Confidence 3334444444444444444
No 65
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=92.66 E-value=2.9 Score=48.81 Aligned_cols=45 Identities=18% Similarity=0.152 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCceeeee
Q 016990 269 NNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWH 313 (379)
Q Consensus 269 n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrkTNV~nd~F~I~h 313 (379)
+.-..+|..++.+...|..-+.....|+++|+..||+-+.=-|.|
T Consensus 1263 ~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik~sdi~GA~~~~r~ 1307 (1758)
T KOG0994|consen 1263 PLAGKDLESLQREFNGLLTTYKELREQLEKIKESDILGAFNSTRH 1307 (1758)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhHHHHHHH
Confidence 344578888899999999999999999999999998765434444
No 66
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=92.57 E-value=6.5 Score=38.09 Aligned_cols=63 Identities=16% Similarity=0.181 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 228 KLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIE 290 (379)
Q Consensus 228 ~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~ 290 (379)
++.++.+.|..|+....++|......+..++..=.+-|.+.+..+.....+.+|..-+..+++
T Consensus 36 e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in 98 (230)
T PF10146_consen 36 EYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEIN 98 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666666555555555556666666666665555555444444433
No 67
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.55 E-value=11 Score=41.03 Aligned_cols=30 Identities=10% Similarity=0.324 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 016990 176 VLSDKLDKEVDDVTRDIEAYEACLQRLEGE 205 (379)
Q Consensus 176 ~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~ 205 (379)
.-++-|.+....++.+..-|+.++..++..
T Consensus 259 ~~~eslre~~~~L~~D~nK~~~y~~~~~~k 288 (581)
T KOG0995|consen 259 GKEESLREKKARLQDDVNKFQAYVSQMKSK 288 (581)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 346667778888888888888888877654
No 68
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=92.49 E-value=8.6 Score=35.38 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016990 218 EKLKIEEEERKLEAAIEET 236 (379)
Q Consensus 218 el~~Le~EE~~L~~eLeel 236 (379)
+.++|+..++.....|-++
T Consensus 49 evD~Le~~er~aR~rL~eV 67 (159)
T PF05384_consen 49 EVDKLEKRERQARQRLAEV 67 (159)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444
No 69
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=92.47 E-value=4.8 Score=43.82 Aligned_cols=63 Identities=17% Similarity=0.200 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 185 VDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (379)
Q Consensus 185 le~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~ 254 (379)
++.+..+.+.|..-.+ ++. ...++.+++.+++.+...+..+++.++.+.+.+++++++++.+.
T Consensus 184 ~~~L~~dl~~~~~~~~---~~~----~~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l 246 (650)
T TIGR03185 184 IDRLAGDLTNVLRRRK---KSE----LPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSL 246 (650)
T ss_pred HHHHHHHHHHHHHHHH---hcc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666543322 111 12334455556666666666666666666666666655555443
No 70
>PRK10884 SH3 domain-containing protein; Provisional
Probab=92.41 E-value=3.5 Score=39.24 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Q 016990 279 QEERDAISSKIEVSQAHLELLKRTN 303 (379)
Q Consensus 279 ~eE~~sl~~q~~~~~~qLdkLrkTN 303 (379)
.+++..+.++.+.+..+++.++++.
T Consensus 145 ~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 145 KNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444555566666644
No 71
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=92.39 E-value=9.5 Score=35.62 Aligned_cols=43 Identities=9% Similarity=0.211 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 254 SKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHL 296 (379)
Q Consensus 254 ~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qL 296 (379)
...+.....++-..+..++.++.++..++..+.++...++.+.
T Consensus 107 ~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~ 149 (221)
T PF04012_consen 107 LDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQK 149 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444445566666777777777777777776665543
No 72
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.37 E-value=4.4 Score=35.58 Aligned_cols=31 Identities=23% Similarity=0.421 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 016990 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGE 205 (379)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~ 205 (379)
-.+++.|..++...+.|+..++.-+.+|..+
T Consensus 15 ~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~ 45 (120)
T PF12325_consen 15 VQLVERLQSQLRRLEGELASLQEELARLEAE 45 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999988764
No 73
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=92.30 E-value=12 Score=37.41 Aligned_cols=29 Identities=17% Similarity=0.366 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016990 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLE 203 (379)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (379)
+.|.+.|+..++.+..|.......+..+.
T Consensus 148 ~gl~~~L~~~~~~L~~D~~~L~~~~~~l~ 176 (325)
T PF08317_consen 148 EGLKEGLEENLELLQEDYAKLDKQLEQLD 176 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666555555543
No 74
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.17 E-value=6.3 Score=45.40 Aligned_cols=78 Identities=21% Similarity=0.274 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 212 EADFLKEKLKIEEEERKLEAAIEETEKQN-------AEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDA 284 (379)
Q Consensus 212 ee~l~~el~~Le~EE~~L~~eLeelEkE~-------~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~s 284 (379)
++.+++|+..++.+..+...++++++... ++++++...+..+..++...-+..|++-+.++..+....+.+.+
T Consensus 413 e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~ 492 (1200)
T KOG0964|consen 413 ENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSR 492 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666665555555555444 45555556666666666666778999999888777666666555
Q ss_pred HHHHH
Q 016990 285 ISSKI 289 (379)
Q Consensus 285 l~~q~ 289 (379)
.+.++
T Consensus 493 ~~~~L 497 (1200)
T KOG0964|consen 493 AEKNL 497 (1200)
T ss_pred HHHHH
Confidence 44443
No 75
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=92.05 E-value=10 Score=41.13 Aligned_cols=20 Identities=15% Similarity=0.391 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016990 181 LDKEVDDVTRDIEAYEACLQ 200 (379)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~ 200 (379)
++.++..+..|.+.|..-+.
T Consensus 111 ~e~ei~kl~~e~~elr~~~~ 130 (546)
T KOG0977|consen 111 LEIEITKLREELKELRKKLE 130 (546)
T ss_pred HHHHHHHhHHHHHHHHHHHH
Confidence 44444444555555543333
No 76
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=91.88 E-value=6.2 Score=42.48 Aligned_cols=42 Identities=14% Similarity=0.260 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 242 EVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERD 283 (379)
Q Consensus 242 ~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~ 283 (379)
.+..++.++..+...++.+...++...+.+...-.+..+.+.
T Consensus 380 el~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~ 421 (569)
T PRK04778 380 ELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLE 421 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444433333333
No 77
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=91.71 E-value=9.8 Score=34.36 Aligned_cols=41 Identities=17% Similarity=0.298 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (379)
Q Consensus 218 el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~ 258 (379)
++..+-.+.+.|..+|..+-.++..+.+++...+.+...|+
T Consensus 60 el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 60 ELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELE 100 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555555555555444444443333
No 78
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.70 E-value=7.6 Score=42.39 Aligned_cols=32 Identities=19% Similarity=0.221 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAEL 247 (379)
Q Consensus 216 ~~el~~Le~EE~~L~~eLeelEkE~~~l~~el 247 (379)
..|+++++..|.+|.++-.+||.|.-.+.++.
T Consensus 155 r~elKe~KfRE~RllseYSELEEENIsLQKqV 186 (772)
T KOG0999|consen 155 RDELKEYKFREARLLSEYSELEEENISLQKQV 186 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 44666777778888888888877665555443
No 79
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=91.66 E-value=9.1 Score=33.86 Aligned_cols=6 Identities=50% Similarity=0.661 Sum_probs=2.8
Q ss_pred HHHHHh
Q 016990 295 HLELLK 300 (379)
Q Consensus 295 qLdkLr 300 (379)
++++|+
T Consensus 141 E~~kLk 146 (151)
T PF11559_consen 141 EIEKLK 146 (151)
T ss_pred HHHHHH
Confidence 444444
No 80
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=91.64 E-value=3.9 Score=44.76 Aligned_cols=44 Identities=30% Similarity=0.424 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (379)
Q Consensus 216 ~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~e 259 (379)
.+++.+++.-.++|..+..+|+.+.++++++++.|+.+..++..
T Consensus 421 ~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r 464 (652)
T COG2433 421 EKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRR 464 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555556666666666666666666655555443
No 81
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=91.50 E-value=11 Score=44.99 Aligned_cols=10 Identities=0% Similarity=0.069 Sum_probs=4.9
Q ss_pred HHHHHHHHhh
Q 016990 150 TVLKRAFEIA 159 (379)
Q Consensus 150 ~~l~~lFdIl 159 (379)
.....+|..|
T Consensus 180 ~ry~~l~~~l 189 (1353)
T TIGR02680 180 ERYAALLDLL 189 (1353)
T ss_pred HHHHHHHHHH
Confidence 3444555555
No 82
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.48 E-value=5.1 Score=47.24 Aligned_cols=15 Identities=20% Similarity=0.565 Sum_probs=9.8
Q ss_pred eeecCCcee-eccccc
Q 016990 311 IWHDGEFGT-INNFRL 325 (379)
Q Consensus 311 I~hdG~fGT-INgfRL 325 (379)
+|..-.-|| |.++|+
T Consensus 1149 ~w~~~~~~~~~~~i~~ 1164 (1311)
T TIGR00606 1149 LWRSTYRGQDIEYIEI 1164 (1311)
T ss_pred HHHHHcCccHHHHhhc
Confidence 555544455 888888
No 83
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=91.47 E-value=5.1 Score=38.69 Aligned_cols=17 Identities=29% Similarity=0.448 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016990 224 EEERKLEAAIEETEKQN 240 (379)
Q Consensus 224 ~EE~~L~~eLeelEkE~ 240 (379)
++...|+.++++..+++
T Consensus 158 ~~~~kL~~el~~~~~~L 174 (216)
T KOG1962|consen 158 ADLEKLETELEKKQKKL 174 (216)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 84
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=91.46 E-value=15 Score=35.88 Aligned_cols=70 Identities=21% Similarity=0.305 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQA 294 (379)
Q Consensus 222 Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~ 294 (379)
+..|...+...+..++.+...+......|+.. +.+.|.+|=.+...++..+..++.++..+..++.....
T Consensus 214 ~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~---l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ 283 (312)
T PF00038_consen 214 AKEELKELRRQIQSLQAELESLRAKNASLERQ---LRELEQRLDEEREEYQAEIAELEEELAELREEMARQLR 283 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHhhhhHhhhhhhccccchhhhhhh---HHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Confidence 33444444444444444444444444444332 23334444444555555555555555555555444333
No 85
>PRK01156 chromosome segregation protein; Provisional
Probab=91.46 E-value=8.4 Score=43.21 Aligned_cols=34 Identities=18% Similarity=0.346 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016990 268 FNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (379)
Q Consensus 268 ~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrk 301 (379)
++.....+.++..+...++.++......++.|++
T Consensus 411 ~~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~ 444 (895)
T PRK01156 411 LNEINVKLQDISSKVSSLNQRIRALRENLDELSR 444 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666677777788888877777777777775
No 86
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.15 E-value=10 Score=33.39 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (379)
Q Consensus 218 el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~ 254 (379)
.+..++-|...+..++..+++++..+.+||-.+..+.
T Consensus 24 ~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~ 60 (120)
T PF12325_consen 24 QLRRLEGELASLQEELARLEAERDELREEIVKLMEEN 60 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555554444443
No 87
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=91.05 E-value=19 Score=36.37 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRL 202 (379)
Q Consensus 174 td~Lle~Ld~qle~~~~E~d~Y~~fL~~L 202 (379)
.+.|.+.|+..++.+..|...-...++.+
T Consensus 142 legLk~~L~~~~~~l~~D~~~L~~~~~~l 170 (312)
T smart00787 142 LEGLKEGLDENLEGLKEDYKLLMKELELL 170 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666665554444444
No 88
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=90.95 E-value=9.7 Score=39.19 Aligned_cols=77 Identities=22% Similarity=0.284 Sum_probs=45.7
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 166 EQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNA 245 (379)
Q Consensus 166 DhPLC~ECtd~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~ 245 (379)
|.-...|.|..+...+...+.+ ....|++|.. ++.+.+++++.-|+-+-.+++.+-.+...+..
T Consensus 217 DWR~hleqm~~~~~~I~~~~~~-------~~~~L~kl~~---------~i~~~lekI~sREk~iN~qle~l~~eYr~~~~ 280 (359)
T PF10498_consen 217 DWRSHLEQMKQHKKSIESALPE-------TKSQLDKLQQ---------DISKTLEKIESREKYINNQLEPLIQEYRSAQD 280 (359)
T ss_pred hHHHHHHHHHHHHHHHHHhhhH-------HHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4444444444444444444433 3445555542 34555666777777777777777777777777
Q ss_pred HHHHHHHHHHHHH
Q 016990 246 ELKELELKSKRFK 258 (379)
Q Consensus 246 el~~le~e~~~L~ 258 (379)
++.+++.+.++..
T Consensus 281 ~ls~~~~~y~~~s 293 (359)
T PF10498_consen 281 ELSEVQEKYKQAS 293 (359)
T ss_pred HHHHHHHHHHHHh
Confidence 7777776655544
No 89
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=90.78 E-value=19 Score=36.73 Aligned_cols=167 Identities=13% Similarity=0.216 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhch-------hc--c---------cC----CHHHH-------HHHHHHHHHHHHHHH
Q 016990 180 KLDKEVDDVTRDIEAYEACLQRLEGE-------AR--D---------VL----SEADF-------LKEKLKIEEEERKLE 230 (379)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~L~~~-------~~--~---------~~----~ee~l-------~~el~~Le~EE~~L~ 230 (379)
.|-++|+....|+|.|..-.+.|... .. . .+ ....+ .++...|..|-..|.
T Consensus 13 IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lr 92 (319)
T PF09789_consen 13 ILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELR 92 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888888999888666655421 00 0 00 01111 223344666666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 231 AAIEETEKQNAEVNAELKELELK------------SKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 298 (379)
Q Consensus 231 ~eLeelEkE~~~l~~el~~le~e------------~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdk 298 (379)
+.|.+++.+..-+.+.+...+.. .+++-.+=+..+..+..+++++....+|..-+....++.+...+|
T Consensus 93 qkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~R 172 (319)
T PF09789_consen 93 QKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHR 172 (319)
T ss_pred HHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777666666655554421 122222223466677777777777777777777777777777777
Q ss_pred HhccccccCceee--eecCCceeecccccCCCCCCCCChhhHHHHHHHHHHHHHHHHhh
Q 016990 299 LKRTNVLNDAFPI--WHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQY 355 (379)
Q Consensus 299 LrkTNV~nd~F~I--~hdG~fGTINgfRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~k 355 (379)
|..- ..+| +++..+-.|.+|-+=- .-==..|+.+-.-.-|+-.+|.++
T Consensus 173 LN~E-----Ln~~L~g~~~rivDIDaLi~EN----RyL~erl~q~qeE~~l~k~~i~KY 222 (319)
T PF09789_consen 173 LNHE-----LNYILNGDENRIVDIDALIMEN----RYLKERLKQLQEEKELLKQTINKY 222 (319)
T ss_pred HHHH-----HHHHhCCCCCCcccHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7321 1111 0111222233332210 111235677777778888888775
No 90
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=90.67 E-value=15 Score=34.63 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016990 268 FNNFQFQLIAHQEERDAISSKIE 290 (379)
Q Consensus 268 ~n~~q~qL~~~~eE~~sl~~q~~ 290 (379)
+..+......++.|++.+..++.
T Consensus 109 ~evL~qr~~kle~ErdeL~~kf~ 131 (201)
T PF13851_consen 109 HEVLEQRFEKLEQERDELYRKFE 131 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555544
No 91
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=90.62 E-value=11 Score=40.75 Aligned_cols=78 Identities=22% Similarity=0.297 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016990 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (379)
Q Consensus 222 Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrk 301 (379)
...|-+.|...|+..|++++.+..+++.+.....+|+++ .-.-...++-|+..+-|-+.+++.++.....+++.||.
T Consensus 439 f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDE---L~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK~ 515 (518)
T PF10212_consen 439 FYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDE---LETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTLKL 515 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345566666777777777777777766666555444433 33556677888999999999999999999999999985
Q ss_pred c
Q 016990 302 T 302 (379)
Q Consensus 302 T 302 (379)
.
T Consensus 516 ~ 516 (518)
T PF10212_consen 516 A 516 (518)
T ss_pred c
Confidence 4
No 92
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.55 E-value=16 Score=43.14 Aligned_cols=38 Identities=18% Similarity=0.208 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (379)
Q Consensus 213 e~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~l 250 (379)
+++..++..++.+...+..+++.+..+.+.+..+|..|
T Consensus 825 ~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 825 QQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL 862 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555
No 93
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=90.53 E-value=5.2 Score=43.87 Aligned_cols=75 Identities=13% Similarity=0.224 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF---KELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 293 (379)
Q Consensus 219 l~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L---~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~ 293 (379)
.++|+.|-..|..++++++++.+.|.+++..+..+...- +.+=+..-+..+.++..|.+-..+.+.|+.++....
T Consensus 431 ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 431 VERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555433210 101011123455666666666666666665554433
No 94
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=90.51 E-value=15 Score=37.30 Aligned_cols=61 Identities=25% Similarity=0.285 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 228 KLEAAIEETEKQNAEVNAELKELELKSKRFK-ELEERYWQEFNNFQFQLIAHQEERDAISSK 288 (379)
Q Consensus 228 ~L~~eLeelEkE~~~l~~el~~le~e~~~L~-eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q 288 (379)
+|...|..|+++...+..++..+..+.-.++ .+|.+==.-+|.+..+...+..+...+..+
T Consensus 139 kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~ 200 (310)
T PF09755_consen 139 KLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEK 200 (310)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555433332 111111133555555555555555444443
No 95
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=90.49 E-value=17 Score=38.69 Aligned_cols=8 Identities=50% Similarity=0.517 Sum_probs=5.4
Q ss_pred cCCCCCce
Q 016990 66 STRMDNSF 73 (379)
Q Consensus 66 ~~~~d~s~ 73 (379)
--|||.|.
T Consensus 182 LERMD~s~ 189 (493)
T KOG0804|consen 182 LERMDSST 189 (493)
T ss_pred HhhcCccc
Confidence 35777776
No 96
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=90.43 E-value=17 Score=44.90 Aligned_cols=12 Identities=17% Similarity=0.614 Sum_probs=6.9
Q ss_pred CCce--eecCCCCC
Q 016990 70 DNSF--VVLPKQRP 81 (379)
Q Consensus 70 d~s~--vvl~~~~~ 81 (379)
-+-| .++|.+..
T Consensus 658 ~phFvRCiIPn~~K 671 (1930)
T KOG0161|consen 658 HPHFVRCIIPNEEK 671 (1930)
T ss_pred CCceeEEeccCccc
Confidence 3456 56776643
No 97
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=90.35 E-value=12 Score=37.82 Aligned_cols=72 Identities=15% Similarity=0.251 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 180 KLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (379)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~ 252 (379)
.|-++-+++.++--.|-.-|+.+..... .++..++.....+++.........|++++++.+.+..++...+.
T Consensus 38 ~~yQ~~EQAr~~A~~fA~~ld~~~~kl~-~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~ 109 (301)
T PF06120_consen 38 YFYQNAEQARQEAIEFADSLDELKEKLK-EMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQ 109 (301)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888889888888765433 34556665555566666666666666666666666666654443
No 98
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=89.97 E-value=9.8 Score=34.37 Aligned_cols=22 Identities=14% Similarity=0.397 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 016990 182 DKEVDDVTRDIEAYEACLQRLE 203 (379)
Q Consensus 182 d~qle~~~~E~d~Y~~fL~~L~ 203 (379)
-.++..+..+.+....-...|+
T Consensus 9 ~~kLK~~~~e~dsle~~v~~LE 30 (140)
T PF10473_consen 9 EEKLKESESEKDSLEDHVESLE 30 (140)
T ss_pred HHHHHHHHHhHhhHHHHHHHHH
Confidence 3455556666666555444444
No 99
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=89.81 E-value=22 Score=39.96 Aligned_cols=50 Identities=20% Similarity=0.302 Sum_probs=36.7
Q ss_pred HHHhhcCCCCcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 016990 155 AFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEA 206 (379)
Q Consensus 155 lFdIlSs~s~IDhPLC~ECtd~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~ 206 (379)
.|-.-+..+.| .|+-.|-+..+.. +.+++..+.+|||+...-.+.|+++-
T Consensus 390 ~~~~k~~~s~~-ssl~~e~~QRva~-lEkKvqa~~kERDalr~e~kslk~el 439 (961)
T KOG4673|consen 390 DLKRKSNESEV-SSLREEYHQRVAT-LEKKVQALTKERDALRREQKSLKKEL 439 (961)
T ss_pred HHHHHhhcccc-cchHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33344455544 4777888877765 89999999999999998888777653
No 100
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=89.79 E-value=45 Score=38.68 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 270 NFQFQLIAHQEERDAISSKIEVSQAH 295 (379)
Q Consensus 270 ~~q~qL~~~~eE~~sl~~q~~~~~~q 295 (379)
.+|.++..+++..+.++..++.....
T Consensus 329 sLQ~eve~lkEr~deletdlEILKaE 354 (1243)
T KOG0971|consen 329 SLQQEVEALKERVDELETDLEILKAE 354 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555444433
No 101
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=89.39 E-value=19 Score=40.38 Aligned_cols=74 Identities=16% Similarity=0.216 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhcccC-CH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVL-SE-------ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKE 249 (379)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~-~e-------e~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~ 249 (379)
|..|+.++.++..+...+..-.++|.....+.. +. ..+..|+++++.-|.+|.+...+||.|.-.+.+++..
T Consensus 36 i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~ 115 (717)
T PF09730_consen 36 ILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSV 115 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 334555555555555555555555443211000 01 1123455566666777777777777777666666554
Q ss_pred HH
Q 016990 250 LE 251 (379)
Q Consensus 250 le 251 (379)
|+
T Consensus 116 Lk 117 (717)
T PF09730_consen 116 LK 117 (717)
T ss_pred HH
Confidence 44
No 102
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=89.23 E-value=16 Score=40.73 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 232 AIEETEKQNAEVNAELKELELKSKRF 257 (379)
Q Consensus 232 eLeelEkE~~~l~~el~~le~e~~~L 257 (379)
...+||.|...|..|++..+++...+
T Consensus 546 r~~~lE~E~~~lr~elk~kee~~~~~ 571 (697)
T PF09726_consen 546 RRRQLESELKKLRRELKQKEEQIREL 571 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555554444333
No 103
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=89.13 E-value=19 Score=33.61 Aligned_cols=81 Identities=21% Similarity=0.345 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---hchhc----ccCCHHHHHHHHHHHHHHHHH----------HHHHHHHHHH
Q 016990 176 VLSDKLDKEVDDVTRDIEAYEACLQRL---EGEAR----DVLSEADFLKEKLKIEEEERK----------LEAAIEETEK 238 (379)
Q Consensus 176 ~Lle~Ld~qle~~~~E~d~Y~~fL~~L---~~~~~----~~~~ee~l~~el~~Le~EE~~----------L~~eLeelEk 238 (379)
.|+..|+.++.+-.+-|..+..-+..- ..... ......++..-+.+|++|..+ |..+|+..-+
T Consensus 16 ~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~ 95 (182)
T PF15035_consen 16 QLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQVNALLREQLEQARK 95 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 577788888888777777777666311 10000 000112333334445544442 5556666667
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016990 239 QNAEVNAELKELELKSKR 256 (379)
Q Consensus 239 E~~~l~~el~~le~e~~~ 256 (379)
....|..++..+..+...
T Consensus 96 ~N~~L~~dl~klt~~~~~ 113 (182)
T PF15035_consen 96 ANEALQEDLQKLTQDWER 113 (182)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777766655433
No 104
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=89.12 E-value=20 Score=39.42 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCCC
Q 016990 336 DEINAAWGQACLLLHTMCQYFRPK 359 (379)
Q Consensus 336 ~EINAAwGQ~~LLL~tla~kl~~~ 359 (379)
.|..+-+|++-.-|..+-.++.++
T Consensus 198 keL~~kl~~l~~~l~~~~e~le~K 221 (617)
T PF15070_consen 198 KELQKKLGELQEKLHNLKEKLELK 221 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 367777888887888887776554
No 105
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=88.82 E-value=16 Score=45.15 Aligned_cols=30 Identities=20% Similarity=0.224 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 237 EKQNAEVNAELKELELKSKRFKELEERYWQ 266 (379)
Q Consensus 237 EkE~~~l~~el~~le~e~~~L~eeEe~~w~ 266 (379)
+.|...+..+++.++.+...+++....+-+
T Consensus 956 ~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~k 985 (1930)
T KOG0161|consen 956 ELEKNAAENKLKNLEEEINSLDENISKLSK 985 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444333333333333
No 106
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=88.77 E-value=11 Score=30.32 Aligned_cols=52 Identities=25% Similarity=0.303 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNF 271 (379)
Q Consensus 220 ~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~ 271 (379)
.+||.--..+...|..|+.+.+++.++-..+..+...|.++.+++-.+++..
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~ 58 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAW 58 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555554444444444444443333333333
No 107
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=88.69 E-value=9.4 Score=40.21 Aligned_cols=9 Identities=33% Similarity=0.519 Sum_probs=4.2
Q ss_pred HHHHHHHhc
Q 016990 293 QAHLELLKR 301 (379)
Q Consensus 293 ~~qLdkLrk 301 (379)
-.+|+-+.+
T Consensus 118 a~~L~A~~r 126 (420)
T COG4942 118 AEQLAALQR 126 (420)
T ss_pred HHHHHHHHh
Confidence 344555544
No 108
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=88.64 E-value=37 Score=37.12 Aligned_cols=41 Identities=22% Similarity=0.160 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (379)
Q Consensus 217 ~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L 257 (379)
+++..++.+..++..++..++.+...+..++..++.+..++
T Consensus 428 e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 468 (650)
T TIGR03185 428 EELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEK 468 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555544443
No 109
>PRK11519 tyrosine kinase; Provisional
Probab=88.61 E-value=44 Score=37.06 Aligned_cols=34 Identities=9% Similarity=0.007 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016990 267 EFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (379)
Q Consensus 267 e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLr 300 (379)
..+..+.++.+++.+.+..+..|+....+++.++
T Consensus 364 ~lp~~e~~~~~L~Re~~~~~~lY~~lL~r~~e~~ 397 (719)
T PRK11519 364 AMPKTQQEIVRLTRDVESGQQVYMQLLNKQQELK 397 (719)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555666666666666677776666666554
No 110
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=88.58 E-value=27 Score=34.96 Aligned_cols=79 Identities=15% Similarity=0.271 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Q 016990 224 EEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAIS---SKIEVSQAHLELLK 300 (379)
Q Consensus 224 ~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~---~q~~~~~~qLdkLr 300 (379)
.+...++....+++.+..++.-|++.++. +++.+--+|++....+..++.......+++. ..++.+..-|++-+
T Consensus 52 sqL~q~etrnrdl~t~nqrl~~E~e~~Ke---k~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErak 128 (333)
T KOG1853|consen 52 SQLDQLETRNRDLETRNQRLTTEQERNKE---KQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAK 128 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhh
Confidence 33334444444444444444444333332 2333334566666666665555544444432 23455556677766
Q ss_pred ccccc
Q 016990 301 RTNVL 305 (379)
Q Consensus 301 kTNV~ 305 (379)
+.-+|
T Consensus 129 Rati~ 133 (333)
T KOG1853|consen 129 RATIY 133 (333)
T ss_pred hhhhh
Confidence 65554
No 111
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=88.51 E-value=26 Score=34.20 Aligned_cols=15 Identities=27% Similarity=0.523 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 016990 285 ISSKIEVSQAHLELL 299 (379)
Q Consensus 285 l~~q~~~~~~qLdkL 299 (379)
+++++...+.+|+.|
T Consensus 122 le~~i~~L~eEl~fl 136 (312)
T PF00038_consen 122 LENQIQSLKEELEFL 136 (312)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444433333
No 112
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=88.50 E-value=6.8 Score=41.77 Aligned_cols=76 Identities=16% Similarity=0.197 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016990 225 EERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEE-RYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (379)
Q Consensus 225 EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe-~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLr 300 (379)
+-++++.++..++++.+.+.+|-+.|+.+...+++.-. .+-.+..+++.+...+++++..+..++...+.+|+-+.
T Consensus 67 ~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~~ 143 (472)
T TIGR03752 67 EVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAGVL 143 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33444444444444554444444444444333332222 12222334444555555666666666666666665433
No 113
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=88.48 E-value=8.2 Score=37.28 Aligned_cols=37 Identities=30% Similarity=0.420 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (379)
Q Consensus 222 Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~ 258 (379)
+++|...+.++++.++++.++...+++.++.+...+.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~ 185 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALK 185 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555444444444444433333
No 114
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=88.24 E-value=24 Score=33.60 Aligned_cols=33 Identities=33% Similarity=0.470 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (379)
Q Consensus 222 Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~ 254 (379)
||++-+.|.++...+|+|...+-+++..++.+.
T Consensus 79 lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen 111 (193)
T PF14662_consen 79 LEEENRSLLAQARQLEKEQQSLVAEIETLQEEN 111 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445555554444444444444433
No 115
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=88.14 E-value=28 Score=40.46 Aligned_cols=16 Identities=19% Similarity=0.331 Sum_probs=7.2
Q ss_pred ceeecCCCCCCCCCCC
Q 016990 72 SFVVLPKQRPQSHGVP 87 (379)
Q Consensus 72 s~vvl~~~~~~~~~~~ 87 (379)
-+-|||=.+-++..++
T Consensus 571 RvTiIPLnKI~s~~~s 586 (1174)
T KOG0933|consen 571 RVTIIPLNKIQSFVLS 586 (1174)
T ss_pred eeEEEechhhhhccCC
Confidence 3345555544333333
No 116
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=88.11 E-value=19 Score=38.11 Aligned_cols=109 Identities=15% Similarity=0.121 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhc-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 180 KLDKEVDDVTRDIEAYEACLQRLEGEAR-DVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (379)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~L~~~~~-~~~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~ 258 (379)
+.|+++.+++.++.....--.++..+.. .....+.+.+.+.+.|.|.++|.+|..++-.++-....+-+.+......++
T Consensus 10 ~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~e 89 (459)
T KOG0288|consen 10 ENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLIAE 89 (459)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777666554333333332210 000122233344445566666666666555555444444333444444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 259 ELEERYWQEFNNFQFQLIAHQEERDAISSK 288 (379)
Q Consensus 259 eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q 288 (379)
.++-++..+..+++.|-.+|.+.-..+...
T Consensus 90 n~~~r~~~eir~~~~q~~e~~n~~~~l~~~ 119 (459)
T KOG0288|consen 90 NLRIRSLNEIRELREQKAEFENAELALREM 119 (459)
T ss_pred HHHHHHHHHHHHHHHhhhhhccchhhHHHH
Confidence 555566666666666666666555554333
No 117
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=88.08 E-value=17 Score=35.35 Aligned_cols=39 Identities=33% Similarity=0.498 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 260 (379)
Q Consensus 222 Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~ee 260 (379)
++.+..+|..+....+.++..|.+++.+++.+..+|.++
T Consensus 59 aee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee 97 (246)
T PF00769_consen 59 AEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEE 97 (246)
T ss_dssp HHHHHHHHHH------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444455555555666555555555433
No 118
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=88.02 E-value=4.8 Score=44.04 Aligned_cols=70 Identities=29% Similarity=0.361 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCc
Q 016990 229 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDA 308 (379)
Q Consensus 229 L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrkTNV~nd~ 308 (379)
...||-++|..+.+++.+|+++..+.+++++ .+...+-|+.+++..++.++.+++.|+.+|--.-+
T Consensus 91 Vs~EL~ele~krqel~seI~~~n~kiEelk~--------------~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~pkl~ 156 (907)
T KOG2264|consen 91 VSLELTELEVKRQELNSEIEEINTKIEELKR--------------LIPQKQLELSALKGEIEQAQRQLEELRETNNPKLF 156 (907)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--------------HHHHhHHHHHHHHhHHHHHHHHHHHHHhhcCCcee
Confidence 4456667777777777777766665544443 33344556667888899999999999999988777
Q ss_pred eeee
Q 016990 309 FPIW 312 (379)
Q Consensus 309 F~I~ 312 (379)
..|+
T Consensus 157 LP~s 160 (907)
T KOG2264|consen 157 LPFS 160 (907)
T ss_pred eccc
Confidence 7666
No 119
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=87.90 E-value=27 Score=40.59 Aligned_cols=24 Identities=17% Similarity=0.397 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 267 EFNNFQFQLIAHQEERDAISSKIE 290 (379)
Q Consensus 267 e~n~~q~qL~~~~eE~~sl~~q~~ 290 (379)
+|..++++..+++.++.+.+.++.
T Consensus 816 e~e~l~lE~e~l~~e~~~~k~~l~ 839 (1174)
T KOG0933|consen 816 EYERLQLEHEELEKEISSLKQQLE 839 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444333333
No 120
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=87.89 E-value=50 Score=37.08 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 274 QLIAHQEERDAISSKIEVSQAHLEL 298 (379)
Q Consensus 274 qL~~~~eE~~sl~~q~~~~~~qLdk 298 (379)
+|..+.++.+.+.+.++.++.++++
T Consensus 640 EL~~~~~~l~~l~~si~~lk~k~~~ 664 (717)
T PF10168_consen 640 ELERMKDQLQDLKASIEQLKKKLDY 664 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 121
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=87.85 E-value=32 Score=34.52 Aligned_cols=126 Identities=13% Similarity=0.136 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCC-HHH---HHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Q 016990 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLS-EAD---FLKEKLKIEEEERKLEAAIEETEKQ-------NAE 242 (379)
Q Consensus 174 td~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~-ee~---l~~el~~Le~EE~~L~~eLeelEkE-------~~~ 242 (379)
+..-++.+++|++.++++.+.-+.-|...+.+.. .++ +.. ....+..|+.+..+++.++.++... ...
T Consensus 168 ~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~-~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~ 246 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRLNATKAELLKYQIKNK-VFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPS 246 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHH
Confidence 4556677777777777777776666666554332 122 111 1222334455555555554444211 112
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016990 243 VNAELKELELKSKRFKEL-EERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (379)
Q Consensus 243 l~~el~~le~e~~~L~ee-Ee~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLr 300 (379)
+.+++..++.+..+.... ....=...+....++.+++.+.+..+..|+.+...++.++
T Consensus 247 l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~ 305 (362)
T TIGR01010 247 LQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTR 305 (362)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333322211110 0000113566667777888888888888888888888777
No 122
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=87.82 E-value=26 Score=40.74 Aligned_cols=98 Identities=26% Similarity=0.311 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHH
Q 016990 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDA--------------ISSK 288 (379)
Q Consensus 223 e~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~s--------------l~~q 288 (379)
...+..|..++..++++..+..+++++++.........=.+|-.+++.++.++.+.++.|.. ++..
T Consensus 410 ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~d 489 (1200)
T KOG0964|consen 410 KEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEED 489 (1200)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778888888888888888888888766555444455667777777777777666654 3334
Q ss_pred HHHHHHHHHHHhccccccCceee-------eecCCceee
Q 016990 289 IEVSQAHLELLKRTNVLNDAFPI-------WHDGEFGTI 320 (379)
Q Consensus 289 ~~~~~~qLdkLrkTNV~nd~F~I-------~hdG~fGTI 320 (379)
+..++.+|...-.-+|+|-.=.| ..+|.|||.
T Consensus 490 l~~~~~~L~~~~~r~v~nGi~~v~~I~e~~k~ngv~G~v 528 (1200)
T KOG0964|consen 490 LSRAEKNLRATMNRSVANGIDSVRKIKEELKPNGVFGTV 528 (1200)
T ss_pred HHHHHHHHHHhccchhhhhhHHHHHHHHHhcccccceeh
Confidence 45555666666666677654221 146777774
No 123
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=87.78 E-value=36 Score=38.11 Aligned_cols=29 Identities=14% Similarity=0.272 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016990 176 VLSDKLDKEVDDVTRDIEAYEACLQRLEG 204 (379)
Q Consensus 176 ~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~ 204 (379)
..+..|..+++.+..|...=...-+.|+.
T Consensus 418 ~a~~rLE~dvkkLraeLq~~Rq~E~ELRs 446 (697)
T PF09726_consen 418 DAISRLEADVKKLRAELQSSRQSEQELRS 446 (697)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 33446777777776666665544444443
No 124
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=87.62 E-value=23 Score=38.30 Aligned_cols=180 Identities=20% Similarity=0.279 Sum_probs=96.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------chhcc------------cCCHHH------HHHHHHH
Q 016990 170 CLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLE----------GEARD------------VLSEAD------FLKEKLK 221 (379)
Q Consensus 170 C~ECtd~Lle~Ld~qle~~~~E~d~Y~~fL~~L~----------~~~~~------------~~~ee~------l~~el~~ 221 (379)
+.+=.+.+-+.+|.=++.+++|.+++...-+.+. ..... .+++.+ +.+++..
T Consensus 276 ~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~ 355 (560)
T PF06160_consen 276 VEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKE 355 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 6666667777777777788888888764444332 11100 011111 1111222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016990 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (379)
Q Consensus 222 Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrk 301 (379)
++..-..+...+.+-..-...+...+.++......++++-..+|.....+..+-....+.+..+...+......+++.+=
T Consensus 356 l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nL 435 (560)
T PF06160_consen 356 LEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNL 435 (560)
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 22222222222222222233466666777777777777777888888888888777777777777777777766665432
Q ss_pred ccc---ccCceeeeecCCceeecccccCCCCCCCCChhhHHHHHHHHHHHHHHHHh
Q 016990 302 TNV---LNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQ 354 (379)
Q Consensus 302 TNV---~nd~F~I~hdG~fGTINgfRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~ 354 (379)
-.+ |-+.|.-..+ .+.++. ..|..+|++=++||.-+=.+.--+.++..
T Consensus 436 PGlp~~y~~~~~~~~~-~i~~l~----~~L~~~pinm~~v~~~l~~a~~~v~~L~~ 486 (560)
T PF06160_consen 436 PGLPEDYLDYFFDVSD-EIEELS----DELNQVPINMDEVNKQLEEAEDDVETLEE 486 (560)
T ss_pred CCCCHHHHHHHHHHHH-HHHHHH----HHHhcCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 222 1111211111 111111 11334788999999888777655555443
No 125
>PRK09039 hypothetical protein; Validated
Probab=87.58 E-value=35 Score=34.72 Aligned_cols=25 Identities=12% Similarity=0.078 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 176 VLSDKLDKEVDDVTRDIEAYEACLQ 200 (379)
Q Consensus 176 ~Lle~Ld~qle~~~~E~d~Y~~fL~ 200 (379)
.-+..+..+++.++.++..-+..+.
T Consensus 81 ~~l~~l~~~l~~a~~~r~~Le~~~~ 105 (343)
T PRK09039 81 DSVANLRASLSAAEAERSRLQALLA 105 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455556666666666554444333
No 126
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=87.55 E-value=9.2 Score=34.52 Aligned_cols=69 Identities=19% Similarity=0.235 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh---cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 170 CLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEA---RDVLSEADFLKEKLKIEEEERKLEAAIEETEK 238 (379)
Q Consensus 170 C~ECtd~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~---~~~~~ee~l~~el~~Le~EE~~L~~eLeelEk 238 (379)
+..|+.-=+..|+.++.++..+........+.|+.+- ...++.+++......|+.|...+...|+.+..
T Consensus 66 ~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 66 LEVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555566667666666666666666655554331 12345566666666666666666666666554
No 127
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=87.28 E-value=25 Score=37.54 Aligned_cols=16 Identities=25% Similarity=0.169 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 016990 282 RDAISSKIEVSQAHLE 297 (379)
Q Consensus 282 ~~sl~~q~~~~~~qLd 297 (379)
+.+...++.-.+.||.
T Consensus 430 ~~s~d~~I~dLqEQlr 445 (493)
T KOG0804|consen 430 LGSKDEKITDLQEQLR 445 (493)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 128
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=87.17 E-value=26 Score=32.76 Aligned_cols=65 Identities=32% Similarity=0.413 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 227 RKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 297 (379)
Q Consensus 227 ~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLd 297 (379)
..+..++.+|+++...+..++.+++.+.+.++..+++. .+..-..+++|.+-++.+..+..++|+
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~------~~~~~k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEEL------RQEEEKKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555566666666666666665555544443332211 111222344555555454445555554
No 129
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=87.07 E-value=28 Score=33.10 Aligned_cols=53 Identities=11% Similarity=0.044 Sum_probs=25.6
Q ss_pred ccccCceeeeecCCceeecccccCCCCCCCCChhhHHHHHHHHHHHHHH-HHhhcCCCc
Q 016990 303 NVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHT-MCQYFRPKF 360 (379)
Q Consensus 303 NV~nd~F~I~hdG~fGTINgfRLGrlp~~~V~W~EINAAwGQ~~LLL~t-la~kl~~~F 360 (379)
+.....|.|. ....+|+.-.-..|.. .-..=+.-.+ |.+.||+. |.-.+-+.+
T Consensus 170 ~~~~~~~~I~---~~~lp~~~~~~~~~~~-~isaALgyva-hlv~lls~yL~v~Lpy~i 223 (302)
T PF10186_consen 170 DSSSSEYTIC---GLPLPNSRDFNSLPDE-EISAALGYVA-HLVSLLSRYLGVPLPYPI 223 (302)
T ss_pred CCCCCCeeec---CcccCCCcccccCCHH-HHHHHHHHHH-HHHHHHHHHhCCCCCCCc
Confidence 4457788886 3344565544445442 3333344334 44444443 333455554
No 130
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=87.02 E-value=29 Score=39.78 Aligned_cols=9 Identities=33% Similarity=0.471 Sum_probs=6.2
Q ss_pred ecccccCCC
Q 016990 320 INNFRLGRL 328 (379)
Q Consensus 320 INgfRLGrl 328 (379)
||.++|-+-
T Consensus 563 i~ql~l~~~ 571 (980)
T KOG0980|consen 563 INQLELDSS 571 (980)
T ss_pred HHHhhcccc
Confidence 777777753
No 131
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=86.97 E-value=13 Score=41.74 Aligned_cols=13 Identities=23% Similarity=0.181 Sum_probs=10.3
Q ss_pred CceecccCCcceE
Q 016990 20 PRWVCQNCRHFLC 32 (379)
Q Consensus 20 ~~~~Cq~C~~~l~ 32 (379)
+.+...+-+|||.
T Consensus 299 ~~i~l~~~rHPll 311 (782)
T PRK00409 299 GKIDLRQARHPLL 311 (782)
T ss_pred CcEEEcCcCCcee
Confidence 3577889999986
No 132
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=86.86 E-value=36 Score=36.72 Aligned_cols=9 Identities=33% Similarity=0.700 Sum_probs=6.5
Q ss_pred HHHHHHHHH
Q 016990 192 IEAYEACLQ 200 (379)
Q Consensus 192 ~d~Y~~fL~ 200 (379)
++.|..||+
T Consensus 238 ~~~Y~~fl~ 246 (622)
T COG5185 238 TESYKSFLK 246 (622)
T ss_pred HHHHHHHhc
Confidence 566778876
No 133
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=86.85 E-value=9.8 Score=42.75 Aligned_cols=12 Identities=33% Similarity=0.498 Sum_probs=8.6
Q ss_pred ceecccCCcceE
Q 016990 21 RWVCQNCRHFLC 32 (379)
Q Consensus 21 ~~~Cq~C~~~l~ 32 (379)
.+.+.+-+|||.
T Consensus 295 ~i~l~~~rhPll 306 (771)
T TIGR01069 295 KIILENARHPLL 306 (771)
T ss_pred CEEEccccCcee
Confidence 577777777765
No 134
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=86.81 E-value=25 Score=40.16 Aligned_cols=146 Identities=16% Similarity=0.186 Sum_probs=74.2
Q ss_pred HHHHHHhhcCCCCcCCc--chHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhchhcccCCHHHH----
Q 016990 152 LKRAFEIATSQTQVEQP--LCLECMRVLSDKLDKEVDDVTRDIEA----------YEACLQRLEGEARDVLSEADF---- 215 (379)
Q Consensus 152 l~~lFdIlSs~s~IDhP--LC~ECtd~Lle~Ld~qle~~~~E~d~----------Y~~fL~~L~~~~~~~~~ee~l---- 215 (379)
|+.+...||..-.+-+| .|.+=.......+..=+..+.+|.+. |...++++..+.. .+..
T Consensus 521 L~~m~~~L~~~~e~~dp~~~r~~~~~~~~~~v~~~~~~v~~E~krilaRk~liE~rKe~~E~~~~~re----~Eea~~q~ 596 (988)
T KOG2072|consen 521 LTAMAESLSKVVEELDPVIIRNSRAKKKEGAVTNYLKNVDKEHKRILARKSLIEKRKEDLEKQNVERE----AEEAQEQA 596 (988)
T ss_pred HHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhHHHHHHHHHH----HHHHHHHH
Confidence 45666667766666778 48877776666665555555555554 3333333322111 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHH
Q 016990 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAE---LKELELKSKRFKELE-------------ERYWQEFNNFQFQLIAHQ 279 (379)
Q Consensus 216 ~~el~~Le~EE~~L~~eLeelEkE~~~l~~e---l~~le~e~~~L~eeE-------------e~~w~e~n~~q~qL~~~~ 279 (379)
.+..+.-+.|+.+|.+++.+-|+++...+.+ .+.+++....+.+-| -+-..--.-.+.+..+++
T Consensus 597 ~e~~~~r~aE~kRl~ee~~Ere~~R~l~E~e~i~~k~~ke~~~~~~~te~~aK~~k~~d~ed~e~lD~d~i~~~q~eel~ 676 (988)
T KOG2072|consen 597 KEQRQAREAEEKRLIEEKKEREAKRILREKEAIRKKELKERLEQLKQTEVGAKGGKEKDLEDLEKLDADQIKARQIEELE 676 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChHHhhhcCHHHHHHHHHHHHH
Confidence 1112223566667777776666555443333 112222111111111 011111122355777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 016990 280 EERDAISSKIEVSQAHLELLKR 301 (379)
Q Consensus 280 eE~~sl~~q~~~~~~qLdkLrk 301 (379)
.++..++.++.+.-..+|.+.+
T Consensus 677 Ke~kElq~rL~~q~KkiDh~ER 698 (988)
T KOG2072|consen 677 KERKELQSRLQYQEKKIDHLER 698 (988)
T ss_pred HHHHHHHHHHHHHHhhhhHHHH
Confidence 8888888888887766665543
No 135
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=86.73 E-value=30 Score=36.67 Aligned_cols=65 Identities=17% Similarity=0.204 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 229 LEAAIEETEKQNAEVNAELKELELKSKRFKELEE-RYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 293 (379)
Q Consensus 229 L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe-~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~ 293 (379)
|+.++++|.+.+-+....-..+..+.......+. .+.+..|.+.+....+++...+|..++.++=
T Consensus 178 lEe~ieeL~qsl~kd~~~~~~l~~e~n~~k~s~~s~~~k~l~al~llv~tLee~~~~LktqIV~sP 243 (446)
T KOG4438|consen 178 LEENIEELNQSLLKDFNQQMSLLAEYNKMKKSSTSEKNKILNALKLLVVTLEENANCLKTQIVQSP 243 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 3334444443333333333333344434444444 3788889999998899988888877775443
No 136
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=86.68 E-value=29 Score=36.88 Aligned_cols=28 Identities=39% Similarity=0.457 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 016990 275 LIAHQEERDAISSKIEVSQAHLELLKRT 302 (379)
Q Consensus 275 L~~~~eE~~sl~~q~~~~~~qLdkLrkT 302 (379)
|..|++++.+...-++-...+|++|+..
T Consensus 362 Lrrfq~ekeatqELieelrkelehlr~~ 389 (502)
T KOG0982|consen 362 LRRFQEEKEATQELIEELRKELEHLRRR 389 (502)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4446666666655555555666666554
No 137
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=86.62 E-value=33 Score=38.61 Aligned_cols=24 Identities=25% Similarity=0.515 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 267 EFNNFQFQLIAHQEERDAISSKIE 290 (379)
Q Consensus 267 e~n~~q~qL~~~~eE~~sl~~q~~ 290 (379)
+|-.+++++..+++|...++.|++
T Consensus 122 efE~~Khei~rl~Ee~~~l~~qle 145 (717)
T PF09730_consen 122 EFEGLKHEIKRLEEEIELLNSQLE 145 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544443
No 138
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=86.24 E-value=60 Score=36.06 Aligned_cols=126 Identities=13% Similarity=0.134 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccc-CC-H-HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Q 016990 172 ECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDV-LS-E-ADFLKEKLKIEEEERKLEAAIEETEK-------QNA 241 (379)
Q Consensus 172 ECtd~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~-~~-e-e~l~~el~~Le~EE~~L~~eLeelEk-------E~~ 241 (379)
+=+..-++.|++|+..+.++.+.-+.-|+..+.+..-. ++ + ..+..+..+++.+...+..++.++.. +..
T Consensus 263 ~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~~~~hP~v~ 342 (726)
T PRK09841 263 AQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLYKKDHPTYR 342 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCchHH
Confidence 44555677777888777777777777777665542111 11 1 11122233333333333222222211 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016990 242 EVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (379)
Q Consensus 242 ~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrk 301 (379)
.+++++..++.+..+++. --......+.++.+++.+.+..+..|.....+.+.++-
T Consensus 343 ~l~~~~~~L~~~~~~l~~----~~~~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~i 398 (726)
T PRK09841 343 ALLEKRQTLEQERKRLNK----RVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSI 398 (726)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222233333332222221 12344555566666666666767777766655555443
No 139
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=86.10 E-value=47 Score=34.64 Aligned_cols=98 Identities=14% Similarity=0.085 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-----CceeeeecCCceeecccccCCCCCCCCC-hhhHHH
Q 016990 267 EFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLN-----DAFPIWHDGEFGTINNFRLGRLPKIPVE-WDEINA 340 (379)
Q Consensus 267 e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrkTNV~n-----d~F~I~hdG~fGTINgfRLGrlp~~~V~-W~EINA 340 (379)
.+...+.++..++.+.+..+..|+....+++..+-..-+. .-|.|- + -..+|..|+. =.=++.
T Consensus 349 ~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~~~~~~~~~~~~~i~vi-~----------~A~~P~~P~~P~~~~~l 417 (498)
T TIGR03007 349 TIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAEVSKQMEVQDKAVSFRII-D----------PPIVPSKPSGPNRPLLM 417 (498)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCCCceEEEe-C----------CCCCCCCCCCCcHHHHH
Confidence 3456667777888888888888888877777765432221 123331 2 2235555552 223455
Q ss_pred HHHHHH-----HHHHHHHhhcCCCcc--------eeEEeccceeeeec
Q 016990 341 AWGQAC-----LLLHTMCQYFRPKFP--------YPFFTSLCFLVIVD 375 (379)
Q Consensus 341 AwGQ~~-----LLL~tla~kl~~~Fq--------YrLvp~gs~~~~~~ 375 (379)
++|-++ +.+..+...++-.|. ..+-++|..-.+..
T Consensus 418 ~~g~~~Gl~lg~~~~~l~e~ld~~i~~~~~ie~~lglpvLg~iP~~~~ 465 (498)
T TIGR03007 418 LAGLLGGLGAGIGLAFLLSQLRPTVRSVRDLRELTGLPVLGVIPMIAT 465 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHcCCCeEEecCCCCC
Confidence 555433 333444455555551 45667777666543
No 140
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=86.06 E-value=26 Score=38.21 Aligned_cols=27 Identities=19% Similarity=0.398 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhch
Q 016990 179 DKLDKEVDDVTRDIEAYEACLQRLEGE 205 (379)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~~L~~~ 205 (379)
++=++++.+++.-...|..-...|+.+
T Consensus 38 ~rEK~El~~LNDRLA~YIekVR~LEaq 64 (546)
T KOG0977|consen 38 EREKKELQELNDRLAVYIEKVRFLEAQ 64 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667777777777787555555544
No 141
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=86.05 E-value=39 Score=34.36 Aligned_cols=86 Identities=22% Similarity=0.279 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 213 ADFLKEKLKIEEEERKLEAAIEETE------------------KQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQ 274 (379)
Q Consensus 213 e~l~~el~~Le~EE~~L~~eLeelE------------------kE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~q 274 (379)
+.+.+.++.||+|-..|+.+...|. ++......++..+..+..+..++-.+.-.+...+..+
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsq 242 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQ 242 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555557777777777766554 2333344455555555555444445666667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 275 LIAHQEERDAISSKIEVSQAHLEL 298 (379)
Q Consensus 275 L~~~~eE~~sl~~q~~~~~~qLdk 298 (379)
+..++....++-..-+-.+.+|..
T Consensus 243 ivdlQ~r~k~~~~EnEeL~q~L~~ 266 (306)
T PF04849_consen 243 IVDLQQRCKQLAAENEELQQHLQA 266 (306)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHH
Confidence 777777766655555555555443
No 142
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=85.99 E-value=14 Score=36.78 Aligned_cols=151 Identities=23% Similarity=0.333 Sum_probs=80.9
Q ss_pred CccchHHHHHHHH----HhhcC---CCCcCCcchHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHhchhccc--CC-
Q 016990 144 GFHSTITVLKRAF----EIATS---QTQVEQPLCLECMRVLSDKLDKE-VDDV-TRDIEAYEACLQRLEGEARDV--LS- 211 (379)
Q Consensus 144 ~lss~i~~l~~lF----dIlSs---~s~IDhPLC~ECtd~Lle~Ld~q-le~~-~~E~d~Y~~fL~~L~~~~~~~--~~- 211 (379)
...+.+..+..|| ||.++ ++..=.-.+.+|-=.+++.|+.. +.++ ..+...-.+.|.-|+...-++ +.
T Consensus 94 Vk~S~~silq~If~KHGDIAsNc~lkS~~~RS~yLe~Lc~IIqeLq~t~~~~LS~~dl~e~~~~l~DLesa~vkV~WLR~ 173 (269)
T PF05278_consen 94 VKPSQVSILQKIFEKHGDIASNCKLKSQQFRSYYLECLCDIIQELQSTPLKELSESDLKEMIATLKDLESAKVKVDWLRS 173 (269)
T ss_pred EcHhHHHHHHHHHHhCccHhhccccCcHHHHHHHHHHHHHHHHHHhcCcHhhhhHHHHHHHHHHHHHHHHcCcchHHHHH
Confidence 3456778889999 78754 44455556789988899999763 3333 333333445555554321110 00
Q ss_pred -HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 212 -EADFLK------EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDA 284 (379)
Q Consensus 212 -ee~l~~------el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~s 284 (379)
-+++.+ .....+.|.+.....|+..+.|.+...+++++.+++.+.+.+.. .+..-.|.+++.++-.
T Consensus 174 ~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i-------~e~~~rl~~l~~~~~~ 246 (269)
T PF05278_consen 174 KLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERI-------TEMKGRLGELEMESTR 246 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 011111 11123333333444444444444444444444444444333322 3444557777777777
Q ss_pred HHHHHHHHHHHHHHHhc
Q 016990 285 ISSKIEVSQAHLELLKR 301 (379)
Q Consensus 285 l~~q~~~~~~qLdkLrk 301 (379)
+.-.+.++....++..-
T Consensus 247 l~k~~~~~~sKV~kf~~ 263 (269)
T PF05278_consen 247 LSKTIKSIKSKVEKFHG 263 (269)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 77777788887777654
No 143
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=85.97 E-value=13 Score=29.76 Aligned_cols=31 Identities=26% Similarity=0.277 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 226 ERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (379)
Q Consensus 226 E~~L~~eLeelEkE~~~l~~el~~le~e~~~ 256 (379)
...|..|-+.|.+........|+.|..+...
T Consensus 14 Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e 44 (74)
T PF12329_consen 14 IAQLMEEGEKLSKKELKLNNTIKKLRAKIKE 44 (74)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3344444555555555555555555444333
No 144
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=85.96 E-value=15 Score=34.04 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 227 RKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (379)
Q Consensus 227 ~~L~~eLeelEkE~~~l~~el~~le~e~~~L 257 (379)
..+..+.+.++.+.+++.++++.|+.+...|
T Consensus 100 ~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L 130 (161)
T TIGR02894 100 QALQKENERLKNQNESLQKRNEELEKELEKL 130 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555444333
No 145
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=85.80 E-value=7.5 Score=36.96 Aligned_cols=43 Identities=23% Similarity=0.235 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (379)
Q Consensus 216 ~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~ 258 (379)
..++..|+..=.++....-++|.....+++++.+++.+...++
T Consensus 174 ~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~ 216 (221)
T PF05700_consen 174 GEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELK 216 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566666667777777777777777777777766554444
No 146
>PF05149 Flagellar_rod: Paraflagellar rod protein; InterPro: IPR007824 This family consists of several eukaryotic paraflagellar rod component proteins. The eukaryotic flagellum represents one of the most complex macromolecular structures found in any organism and contains more than 250 proteins []. In addition to its locomotive role, the flagellum is probably involved in nutrient uptake since receptors for host low-density lipoproteins are localised on the flagellar membrane as well as on the flagellar pocket membrane [].; GO: 0005516 calmodulin binding, 0009434 microtubule-based flagellum
Probab=85.69 E-value=42 Score=33.80 Aligned_cols=111 Identities=20% Similarity=0.213 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 297 (379)
Q Consensus 218 el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLd 297 (379)
.+.+..+....+-.+|.++++++..+..+...+-..--++.++|++--..|+.| +..+..|..
T Consensus 53 ~l~~n~e~q~~lw~~i~el~~~L~~l~~er~~~v~~ri~~~eqE~~R~~~~~~F-----------------l~~~~qh~q 115 (289)
T PF05149_consen 53 FLQKNEEQQQELWREIQELERELQDLAEERREEVERRIEMREQEAKRRTAAEEF-----------------LQAASQHKQ 115 (289)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHH
Confidence 344455666677777788887777777766655554445555555444445444 333444455
Q ss_pred HHhccccccCceeeeecCCceeecccccCCCCCCCCChhhHHHHHHHHHHHH
Q 016990 298 LLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLL 349 (379)
Q Consensus 298 kLrkTNV~nd~F~I~hdG~fGTINgfRLGrlp~~~V~W~EINAAwGQ~~LLL 349 (379)
+|++|= .|-.= | ..--+.++++=....|..+=-|+-.+-|.+...+..
T Consensus 116 ~L~~~~-~n~~~--~-~~~~~~~~~~V~~~~~~l~~~~d~~~~~~~el~~~~ 163 (289)
T PF05149_consen 116 RLRRCE-ENCDR--A-LSCAESLEEYVQEGCPKLPKKHDKAQEALAELLLEE 163 (289)
T ss_pred HHHHHH-HHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555441 11000 0 112344666666666665545888888888766554
No 147
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=85.59 E-value=38 Score=33.17 Aligned_cols=58 Identities=12% Similarity=0.335 Sum_probs=27.5
Q ss_pred cchHHHHHHHHHhhc-CCCCcCCcc-----hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016990 146 HSTITVLKRAFEIAT-SQTQVEQPL-----CLE-CMRVLSDKLDKEVDDVTRDIEAYEACLQRLE 203 (379)
Q Consensus 146 ss~i~~l~~lFdIlS-s~s~IDhPL-----C~E-Ctd~Lle~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (379)
+-.....+++|..+| +...+.-|| |.| |+..+-+.++...+....=...|..|...++
T Consensus 88 ~~~~~~fgk~~~lws~~E~~L~~~L~~~a~~~d~~~~~~~~~~~~l~~~f~~~Lkeyv~y~~slK 152 (243)
T cd07666 88 FEELKEYGPIYTLWSASEEELADSLKGMASCIDRCCKATDKRMKGLSEQLLPVIHEYVLYSETLM 152 (243)
T ss_pred HHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445667777765 355566666 333 3334444333333333333344444444443
No 148
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=85.58 E-value=27 Score=31.35 Aligned_cols=31 Identities=23% Similarity=0.271 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 222 IEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (379)
Q Consensus 222 Le~EE~~L~~eLeelEkE~~~l~~el~~le~ 252 (379)
++.|...|...+..+|.+.+.+...+..++.
T Consensus 33 ~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~ 63 (143)
T PF12718_consen 33 KEQEITSLQKKNQQLEEELDKLEEQLKEAKE 63 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555444
No 149
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=85.44 E-value=36 Score=32.70 Aligned_cols=37 Identities=32% Similarity=0.384 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (379)
Q Consensus 221 ~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L 257 (379)
.++.|.+.|....+.+++..+..++++.+++.+...+
T Consensus 60 ~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 60 QLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444444444333333
No 150
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=85.29 E-value=30 Score=32.93 Aligned_cols=76 Identities=20% Similarity=0.290 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016990 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (379)
Q Consensus 221 ~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLr 300 (379)
+|+.+..-++..|.+-+.....|.+++.-......+.. ..-...+.+...+..++....+|++..+.++..|+
T Consensus 109 ~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va-------~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq 181 (192)
T PF11180_consen 109 QLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVA-------ARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQ 181 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555544443332222 22223344556666777777777777777777777
Q ss_pred ccc
Q 016990 301 RTN 303 (379)
Q Consensus 301 kTN 303 (379)
+.+
T Consensus 182 ~q~ 184 (192)
T PF11180_consen 182 RQA 184 (192)
T ss_pred HHh
Confidence 653
No 151
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=85.24 E-value=14 Score=41.62 Aligned_cols=7 Identities=29% Similarity=0.292 Sum_probs=4.4
Q ss_pred CCChhhH
Q 016990 332 PVEWDEI 338 (379)
Q Consensus 332 ~V~W~EI 338 (379)
.|+++++
T Consensus 661 ~v~~~~l 667 (771)
T TIGR01069 661 KVHGSEL 667 (771)
T ss_pred EEeHHHc
Confidence 4666665
No 152
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=85.19 E-value=38 Score=32.87 Aligned_cols=73 Identities=16% Similarity=0.226 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 224 EEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHL 296 (379)
Q Consensus 224 ~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qL 296 (379)
.+-..|.+...+++.+...|..+....+.+...|...=..+-.....+.-.......+...+..++..++..+
T Consensus 47 eea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~ 119 (246)
T PF00769_consen 47 EEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDE 119 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444433333333344433333444444444444444444445555555555433
No 153
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=85.17 E-value=3.7 Score=43.12 Aligned_cols=51 Identities=8% Similarity=0.187 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 235 ETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSK 288 (379)
Q Consensus 235 elEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q 288 (379)
.+.++...++.+++.++ .+++..|++||+.|..++.-+..++.....|..|
T Consensus 410 ~l~~~i~~l~~~i~~~~---~rl~~~e~rl~~qF~ame~~~s~mns~~s~L~~q 460 (462)
T PRK08032 410 GVNKTLKKLTKQYNAVS---DSIDATIARYKAQFTQLDKLMTSLNSTSSYLTQQ 460 (462)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555554 3567888999999999988777666555555444
No 154
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=84.97 E-value=23 Score=37.04 Aligned_cols=31 Identities=13% Similarity=0.284 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 016990 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGE 205 (379)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~ 205 (379)
...++.|..++.+..+....+..-+++|+.+
T Consensus 211 ~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~ 241 (395)
T PF10267_consen 211 NLGLQKILEELREIKESQSRLEESIEKLKEQ 241 (395)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888899999988999999888888754
No 155
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=84.94 E-value=11 Score=40.17 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 228 KLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (379)
Q Consensus 228 ~L~~eLeelEkE~~~l~~el~~le~e~~~L~e 259 (379)
.|..++++++++.+.+..+-+.|.+|.++|.+
T Consensus 63 Tlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 63 TLVAEVKELRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444433
No 156
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=84.79 E-value=52 Score=38.78 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016990 229 LEAAIEETEKQNAEVNAELKE 249 (379)
Q Consensus 229 L~~eLeelEkE~~~l~~el~~ 249 (379)
+.+++..++.+...+.++++.
T Consensus 683 ~~~~l~~l~~~l~~~~~e~~~ 703 (1201)
T PF12128_consen 683 IEEQLNELEEELKQLKQELEE 703 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444333
No 157
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=84.75 E-value=19 Score=38.21 Aligned_cols=36 Identities=11% Similarity=0.098 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016990 266 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (379)
Q Consensus 266 ~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrk 301 (379)
.+...+..++.++..++..++.++..++.+|.+|..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 138 SEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 333444444555555555566666666667777654
No 158
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=84.74 E-value=39 Score=40.44 Aligned_cols=7 Identities=14% Similarity=0.325 Sum_probs=3.2
Q ss_pred HHHHHHH
Q 016990 194 AYEACLQ 200 (379)
Q Consensus 194 ~Y~~fL~ 200 (379)
.|..|.+
T Consensus 255 ~y~~y~~ 261 (1353)
T TIGR02680 255 RYRRYAR 261 (1353)
T ss_pred HHHHHHH
Confidence 3444444
No 159
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=84.67 E-value=4.2 Score=35.31 Aligned_cols=15 Identities=20% Similarity=0.556 Sum_probs=12.7
Q ss_pred cccCceeeeecCCcee
Q 016990 304 VLNDAFPIWHDGEFGT 319 (379)
Q Consensus 304 V~nd~F~I~hdG~fGT 319 (379)
+|++=|||.+ -+||.
T Consensus 78 LY~EGFHICn-~~yG~ 92 (110)
T PRK13169 78 LYQEGFHICN-LHYGS 92 (110)
T ss_pred HHHcCceecH-HHhCC
Confidence 5999999987 58875
No 160
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=84.64 E-value=49 Score=40.85 Aligned_cols=120 Identities=14% Similarity=0.134 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLS-EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (379)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~-ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~ 256 (379)
+++.+.+++.+..+.+.|..-|+.+.....+... -.....+...++.++.+|.++.+-++.+..-|..++...-.+...
T Consensus 131 le~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~ 210 (1822)
T KOG4674|consen 131 LERQKAELEALESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLS 210 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4555566666777777777666665432111000 000111111234445555555555555555555544444333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016990 257 FKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (379)
Q Consensus 257 L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLr 300 (379)
+ +.+.=.++..++-+|.....+...+..++.....+...|.
T Consensus 211 ~---~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs 251 (1822)
T KOG4674|consen 211 L---RREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELS 251 (1822)
T ss_pred H---HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2222222444444455555555444444444444444443
No 161
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=84.26 E-value=14 Score=39.19 Aligned_cols=28 Identities=7% Similarity=0.147 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 263 RYWQEFNNFQFQLIAHQEERDAISSKIE 290 (379)
Q Consensus 263 ~~w~e~n~~q~qL~~~~eE~~sl~~q~~ 290 (379)
+......++..++.++++++..++.++.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 169 (525)
T TIGR02231 142 RLLTEDREAERRIRELEKQLSELQNELN 169 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555544443
No 162
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=84.25 E-value=37 Score=31.95 Aligned_cols=107 Identities=26% Similarity=0.315 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 187 DVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLK-------IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (379)
Q Consensus 187 ~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~el~~-------Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~e 259 (379)
+-...-..|...|..|+...-++.....-+.++.. +..+.+.+++++.+-+.+..+++.+|.+++.+..++.+
T Consensus 66 d~~~~f~~~~~tl~~LE~~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~ 145 (190)
T PF05266_consen 66 DSRSSFESLMKTLSELEEHGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQR 145 (190)
T ss_pred CcHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 33344445556666666543222111111222222 33344445555555555555666667777666666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 260 LEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 293 (379)
Q Consensus 260 eEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~ 293 (379)
.....=........++..++.....++..+..+.
T Consensus 146 ~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e 179 (190)
T PF05266_consen 146 QAAKLKEKKEAKDKEISRLKSEAEALKEEIENAE 179 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554444455555555555555555554444443
No 163
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=84.09 E-value=60 Score=35.74 Aligned_cols=60 Identities=17% Similarity=0.148 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 016990 243 VNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 302 (379)
Q Consensus 243 l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrkT 302 (379)
+.++++.++......+.+=.+-|.+.-.++.+..+...+...-+..+......+++|.+.
T Consensus 424 L~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~ 483 (594)
T PF05667_consen 424 LIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD 483 (594)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 344444444333333333346677777888888888888877777777778888888887
No 164
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=84.08 E-value=20 Score=29.86 Aligned_cols=39 Identities=23% Similarity=0.440 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (379)
Q Consensus 215 l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e 253 (379)
...++..+-.+-+.+..+++.+..++..+.+++..+...
T Consensus 27 ~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~ 65 (108)
T PF02403_consen 27 DVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKA 65 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhC
Confidence 345566677788888888999988888888888877764
No 165
>PLN03188 kinesin-12 family protein; Provisional
Probab=84.02 E-value=52 Score=39.25 Aligned_cols=31 Identities=35% Similarity=0.537 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 016990 243 VNAELKELELKSKRFKELEERYWQEFNN-FQFQLIA 277 (379)
Q Consensus 243 l~~el~~le~e~~~L~eeEe~~w~e~n~-~q~qL~~ 277 (379)
|++||..|+.| .+-|.+||++-|. +|.||..
T Consensus 1160 laae~s~l~~e----reker~~~~~enk~l~~qlrd 1191 (1320)
T PLN03188 1160 LAAEISALKVE----REKERRYLRDENKSLQAQLRD 1191 (1320)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHhhHHHHHHHhh
Confidence 45555555443 3567788888875 4555543
No 166
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.98 E-value=14 Score=41.97 Aligned_cols=7 Identities=43% Similarity=0.525 Sum_probs=3.3
Q ss_pred eeccccc
Q 016990 319 TINNFRL 325 (379)
Q Consensus 319 TINgfRL 325 (379)
|-|||+-
T Consensus 632 t~~~~~~ 638 (1118)
T KOG1029|consen 632 TTNGFPA 638 (1118)
T ss_pred ccccCch
Confidence 3455543
No 167
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=83.67 E-value=24 Score=39.17 Aligned_cols=16 Identities=13% Similarity=0.058 Sum_probs=13.4
Q ss_pred eeEEeccceeeeecCc
Q 016990 362 YPFFTSLCFLVIVDGR 377 (379)
Q Consensus 362 YrLvp~gs~~~~~~~~ 377 (379)
-..+|.||||++-||+
T Consensus 328 ~e~~p~s~~S~~n~~~ 343 (861)
T KOG1899|consen 328 SESFPVSSSSTTNNGK 343 (861)
T ss_pred cccccccccccccccC
Confidence 4568999999999875
No 168
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=83.63 E-value=62 Score=34.87 Aligned_cols=38 Identities=24% Similarity=0.289 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 258 KELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 295 (379)
Q Consensus 258 ~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~q 295 (379)
+-.|++|..-.-+||.--.+-.+||+.|+.+++-.-.|
T Consensus 488 e~~EqefLslqeEfQk~ekenl~ERqkLKs~leKLvaq 525 (527)
T PF15066_consen 488 ETREQEFLSLQEEFQKHEKENLEERQKLKSRLEKLVAQ 525 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 45566677777777777777788888888887654443
No 169
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=83.58 E-value=59 Score=38.34 Aligned_cols=9 Identities=44% Similarity=0.778 Sum_probs=3.4
Q ss_pred ccccccccC
Q 016990 37 DSYADKYLN 45 (379)
Q Consensus 37 d~~~~~~~~ 45 (379)
+||++-|++
T Consensus 56 ksF~~yYLP 64 (1201)
T PF12128_consen 56 KSFDDYYLP 64 (1201)
T ss_pred hhHHHHcCC
Confidence 344333333
No 170
>PRK06798 fliD flagellar capping protein; Validated
Probab=83.48 E-value=4.8 Score=42.26 Aligned_cols=54 Identities=7% Similarity=0.249 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 232 AIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSK 288 (379)
Q Consensus 232 eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q 288 (379)
+.+.++.+...++.+++.++ .+++..|++||+.|+.+...+..++.+...+.++
T Consensus 380 r~~~l~~~i~~l~~~~~~~e---~rl~~~e~~l~~qf~ale~~ms~lnsQ~s~l~~~ 433 (440)
T PRK06798 380 RSKSIDNRVSKLDLKITDID---TQNKQKQDNIVDKYQKLESTLAALDSQLKTIKAM 433 (440)
T ss_pred hhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555 3567788999999999988877777655444443
No 171
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=83.42 E-value=33 Score=36.85 Aligned_cols=10 Identities=10% Similarity=-0.317 Sum_probs=4.7
Q ss_pred eeEEecccee
Q 016990 362 YPFFTSLCFL 371 (379)
Q Consensus 362 YrLvp~gs~~ 371 (379)
.-.|.++||.
T Consensus 244 p~~v~ls~fd 253 (514)
T TIGR03319 244 PEAVILSGFD 253 (514)
T ss_pred CCeEEecCCc
Confidence 4444455544
No 172
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=83.23 E-value=26 Score=39.52 Aligned_cols=17 Identities=35% Similarity=0.426 Sum_probs=10.4
Q ss_pred CCccchHHHHHHHHHhh
Q 016990 143 SGFHSTITVLKRAFEIA 159 (379)
Q Consensus 143 ~~lss~i~~l~~lFdIl 159 (379)
++||..+..+..+...+
T Consensus 389 StfS~~m~~~~~Il~~~ 405 (782)
T PRK00409 389 STFSGHMTNIVRILEKA 405 (782)
T ss_pred hHHHHHHHHHHHHHHhC
Confidence 55666666666665554
No 173
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=82.84 E-value=50 Score=34.43 Aligned_cols=29 Identities=17% Similarity=0.291 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016990 176 VLSDKLDKEVDDVTRDIEAYEACLQRLEG 204 (379)
Q Consensus 176 ~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~ 204 (379)
...+.|++|+..++++.+.-+.-|...+.
T Consensus 161 ~~~~fl~~ql~~~~~~L~~ae~~l~~f~~ 189 (498)
T TIGR03007 161 SAQRFIDEQIKTYEKKLEAAENRLKAFKQ 189 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777666666655555543
No 174
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=82.73 E-value=41 Score=39.88 Aligned_cols=14 Identities=14% Similarity=0.173 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 016990 187 DVTRDIEAYEACLQ 200 (379)
Q Consensus 187 ~~~~E~d~Y~~fL~ 200 (379)
.++++...|..-|+
T Consensus 512 ~l~~~~~~~~eele 525 (1317)
T KOG0612|consen 512 KLEALVRQLEEELE 525 (1317)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333344444443
No 175
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=82.63 E-value=51 Score=37.16 Aligned_cols=13 Identities=8% Similarity=0.284 Sum_probs=6.8
Q ss_pred chHHHHHHHHHhh
Q 016990 147 STITVLKRAFEIA 159 (379)
Q Consensus 147 s~i~~l~~lFdIl 159 (379)
-||.++.+=|..+
T Consensus 409 QRva~lEkKvqa~ 421 (961)
T KOG4673|consen 409 QRVATLEKKVQAL 421 (961)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555444
No 176
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=82.59 E-value=41 Score=36.97 Aligned_cols=26 Identities=27% Similarity=0.509 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016990 178 SDKLDKEVDDVTRDIEAYEACLQRLE 203 (379)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (379)
++.|+.+++.+..++..+...++.+.
T Consensus 330 l~~l~~~l~~l~~~i~~~~~~~~~l~ 355 (594)
T PF05667_consen 330 LEELQEQLDELESQIEELEAEIKMLK 355 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666666554
No 177
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=82.34 E-value=67 Score=33.46 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 276 IAHQEERDAISSKIEVSQAHLELL 299 (379)
Q Consensus 276 ~~~~eE~~sl~~q~~~~~~qLdkL 299 (379)
.+...++..++.++..++.++..|
T Consensus 239 ~~~~~~i~~l~~~i~~~~~~~~~~ 262 (457)
T TIGR01000 239 ATIQQQIDQLQKSIASYQVQKAGL 262 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444555555555555555544
No 178
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=82.30 E-value=79 Score=34.28 Aligned_cols=58 Identities=14% Similarity=0.197 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 222 IEEEERKLEAAIEETEKQNAEVNAELKELEL---KSKRFKELEERYWQEFNNFQFQLIAHQ 279 (379)
Q Consensus 222 Le~EE~~L~~eLeelEkE~~~l~~el~~le~---e~~~L~eeEe~~w~e~n~~q~qL~~~~ 279 (379)
|..|....+.+|+.|..+...|..+++...- +.+....+-++..++.+...-+-..+.
T Consensus 335 l~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~ 395 (622)
T COG5185 335 LKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLT 395 (622)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 3333334444444444444444444433321 112223334456666665555444333
No 179
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=82.20 E-value=60 Score=32.81 Aligned_cols=33 Identities=30% Similarity=0.311 Sum_probs=24.3
Q ss_pred CCccchHHHHHHHHHhhcCCCCcCCcchHHHHH
Q 016990 143 SGFHSTITVLKRAFEIATSQTQVEQPLCLECMR 175 (379)
Q Consensus 143 ~~lss~i~~l~~lFdIlSs~s~IDhPLC~ECtd 175 (379)
+-+++.|.-+...-.+.|.-++--.-+|.=-..
T Consensus 53 ~~i~~k~~e~r~~r~lat~l~~~g~~i~e~ls~ 85 (338)
T KOG3647|consen 53 SLIGDKIEELRKARELATDLTQRGTTICEMLSK 85 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Confidence 447888888888878888878777777764443
No 180
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=82.17 E-value=77 Score=34.04 Aligned_cols=60 Identities=18% Similarity=0.173 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 016990 243 VNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 302 (379)
Q Consensus 243 l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrkT 302 (379)
...+....+.+...+..+=++.=......+..|.....+....++--..+..++.-|...
T Consensus 384 Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l~e~ 443 (522)
T PF05701_consen 384 AKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIKALSES 443 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 333333333344444444344444555555566666666666665555666666666443
No 181
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=81.90 E-value=47 Score=31.37 Aligned_cols=32 Identities=16% Similarity=0.331 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016990 269 NNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (379)
Q Consensus 269 n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLr 300 (379)
+.|.+++..-......+...+.+++..+.+|+
T Consensus 153 k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~ 184 (194)
T PF15619_consen 153 KSFRRQLASEKKKHKEAQEEVKSLQEEIQRLN 184 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443
No 182
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=81.81 E-value=39 Score=33.68 Aligned_cols=34 Identities=24% Similarity=0.365 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (379)
Q Consensus 218 el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le 251 (379)
.+..++.+|..|+.+|+.-..|+++..+.+..|+
T Consensus 184 ~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 184 QLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555444444444444444
No 183
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=81.68 E-value=49 Score=37.60 Aligned_cols=77 Identities=21% Similarity=0.363 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016990 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (379)
Q Consensus 222 Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrk 301 (379)
+++|-+++...+.+-+++..+..++ .+.|..+++.+=++-...+-.+++.|.+.+.|...|..-+..--+.+.||+.
T Consensus 467 q~~Enk~~~~~~~ekd~~l~~~kq~---~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~e 543 (861)
T PF15254_consen 467 QKEENKRLRKMFQEKDQELLENKQQ---FDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRE 543 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHH
Confidence 3344444444444444433332222 1223344444444566677788888888888888877666666666666664
No 184
>PRK00106 hypothetical protein; Provisional
Probab=81.67 E-value=59 Score=35.38 Aligned_cols=10 Identities=10% Similarity=-0.217 Sum_probs=4.3
Q ss_pred eeEEecccee
Q 016990 362 YPFFTSLCFL 371 (379)
Q Consensus 362 YrLvp~gs~~ 371 (379)
--.|.++||.
T Consensus 265 p~~v~lS~fd 274 (535)
T PRK00106 265 PEVVVLSGFD 274 (535)
T ss_pred CCeEEEeCCC
Confidence 4444444443
No 185
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=81.63 E-value=50 Score=31.52 Aligned_cols=44 Identities=30% Similarity=0.433 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (379)
Q Consensus 215 l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~ 258 (379)
+..+...+|.|-..|..++..|..+...+..+...++.....|.
T Consensus 86 L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~ 129 (193)
T PF14662_consen 86 LLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELA 129 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHH
Confidence 44455556777777777777777777777777766666665553
No 186
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=81.61 E-value=54 Score=37.74 Aligned_cols=55 Identities=24% Similarity=0.338 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCceee
Q 016990 257 FKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPI 311 (379)
Q Consensus 257 L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrkTNV~nd~F~I 311 (379)
+-..|+.|-.+...+.-.+.+...+++++.++++.....+-.-+.--+.-+-|..
T Consensus 993 ~aRh~kefE~~mrdhrselEe~kKe~eaiineiee~eaeIiQekE~el~e~efka 1047 (1424)
T KOG4572|consen 993 FARHEKEFEIEMRDHRSELEEKKKELEAIINEIEELEAEIIQEKEGELIEDEFKA 1047 (1424)
T ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHhhh
Confidence 3455566667777788888888888888888888777666655555555555554
No 187
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=81.59 E-value=1.1e+02 Score=35.42 Aligned_cols=81 Identities=14% Similarity=0.224 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016990 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (379)
Q Consensus 222 Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrk 301 (379)
|..+-..|..+..++.++.+.-..-+.+++++..+|++.-++.-++.........+..+.+++++..+...+.++++|++
T Consensus 436 l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~ 515 (980)
T KOG0980|consen 436 LRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQR 515 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555444444444444445555566666777777777778888887
Q ss_pred c
Q 016990 302 T 302 (379)
Q Consensus 302 T 302 (379)
+
T Consensus 516 ~ 516 (980)
T KOG0980|consen 516 T 516 (980)
T ss_pred H
Confidence 7
No 188
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=81.51 E-value=69 Score=38.01 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016990 178 SDKLDKEVDDVTRDIEAYEA 197 (379)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~ 197 (379)
+..+.++++.+.+++.....
T Consensus 414 ~kKleke~ek~~~~~~e~e~ 433 (1293)
T KOG0996|consen 414 IKKLEKEIEKARRKKSELEK 433 (1293)
T ss_pred HHHHHHHHHHHHhhHHHHHh
Confidence 34455555555554444433
No 189
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=81.40 E-value=26 Score=29.06 Aligned_cols=55 Identities=15% Similarity=0.269 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q 016990 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEE--RYWQEFNN 270 (379)
Q Consensus 216 ~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe--~~w~e~n~ 270 (379)
.+-++.||+|..-|.+.|+.+|++++=...+|..++.+...|-.... .||.+...
T Consensus 6 lk~mkeLEqEkd~LLqgLe~~Er~r~Wy~~qL~~vq~rq~~Lg~~~~~~~~~~d~~~ 62 (84)
T PF11414_consen 6 LKRMKELEQEKDVLLQGLEMEERERDWYQQQLQSVQERQRHLGRNGTQFDFQMDLHR 62 (84)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCccccccc
Confidence 45677889999999999999999999999999999998888877766 66665543
No 190
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=81.29 E-value=14 Score=38.41 Aligned_cols=87 Identities=16% Similarity=0.306 Sum_probs=43.8
Q ss_pred CCCcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 162 QTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNA 241 (379)
Q Consensus 162 ~s~IDhPLC~ECtd~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~ 241 (379)
.|.+.--+...-....++.|+.++..+..+.......+.++++.........+..+.+.++.+....+.+++++++.++.
T Consensus 320 ~T~i~vg~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~ 399 (451)
T PF03961_consen 320 KTEIEVGVDRPELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELK 399 (451)
T ss_pred cEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333323445556677777777777777777777666542211111222333344444555555555555555554
Q ss_pred HHHHHHH
Q 016990 242 EVNAELK 248 (379)
Q Consensus 242 ~l~~el~ 248 (379)
++.+++.
T Consensus 400 ~l~~~l~ 406 (451)
T PF03961_consen 400 ELKEELE 406 (451)
T ss_pred HHHHHHH
Confidence 4444443
No 191
>PRK11519 tyrosine kinase; Provisional
Probab=81.28 E-value=29 Score=38.41 Aligned_cols=31 Identities=13% Similarity=0.135 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016990 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEG 204 (379)
Q Consensus 174 td~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~ 204 (379)
+...++.|++|+..+.++.+.-+.-|+..+.
T Consensus 265 a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~ 295 (719)
T PRK11519 265 ASKSLAFLAQQLPEVRSRLDVAENKLNAFRQ 295 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777766666666555555544
No 192
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=81.26 E-value=46 Score=32.85 Aligned_cols=38 Identities=26% Similarity=0.424 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (379)
Q Consensus 214 ~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le 251 (379)
.+.+++..++.|-+.+..+|+.++.|...+++.++.+.
T Consensus 153 eL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~ 190 (290)
T COG4026 153 ELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP 190 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 34444444555555555555555555555554444443
No 193
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=81.09 E-value=44 Score=38.87 Aligned_cols=23 Identities=13% Similarity=0.380 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 016990 182 DKEVDDVTRDIEAYEACLQRLEG 204 (379)
Q Consensus 182 d~qle~~~~E~d~Y~~fL~~L~~ 204 (379)
...+..++.+.+.|..-.+++.+
T Consensus 201 ~~~l~~L~~~~~~l~kdVE~~re 223 (1072)
T KOG0979|consen 201 TEKLNRLEDEIDKLEKDVERVRE 223 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888776666654
No 194
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=80.69 E-value=69 Score=35.80 Aligned_cols=61 Identities=25% Similarity=0.238 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERD 283 (379)
Q Consensus 223 e~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~ 283 (379)
+.......+++..|..+...+.+++..+..+...+.++-++.|+.++..+.+|.+......
T Consensus 233 ~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~ 293 (670)
T KOG0239|consen 233 EGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLV 293 (670)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455666666666666666667777777777777888888887666665554443
No 195
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=80.24 E-value=31 Score=32.26 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 226 ERKLEAAIEETEKQNAEVNAELKEL 250 (379)
Q Consensus 226 E~~L~~eLeelEkE~~~l~~el~~l 250 (379)
...+.+++++|+++.+++.+++...
T Consensus 105 R~~~l~~l~~l~~~~~~l~~el~~~ 129 (188)
T PF03962_consen 105 REELLEELEELKKELKELKKELEKY 129 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555666666666555555533
No 196
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=80.19 E-value=30 Score=38.41 Aligned_cols=22 Identities=14% Similarity=0.120 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016990 227 RKLEAAIEETEKQNAEVNAELK 248 (379)
Q Consensus 227 ~~L~~eLeelEkE~~~l~~el~ 248 (379)
+.+..++.+++.++..++.++.
T Consensus 307 ~~~l~~~~~l~~ql~~l~~~~~ 328 (726)
T PRK09841 307 KAVLEQIVNVDNQLNELTFREA 328 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555544433
No 197
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=80.16 E-value=42 Score=29.66 Aligned_cols=27 Identities=22% Similarity=0.470 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 222 IEEEERKLEAAIEETEKQNAEVNAELK 248 (379)
Q Consensus 222 Le~EE~~L~~eLeelEkE~~~l~~el~ 248 (379)
|+.....++.++..++.....+..++.
T Consensus 78 L~~~~~~~ere~~~~~~~~~~l~~~~~ 104 (151)
T PF11559_consen 78 LKEQLEELERELASAEEKERQLQKQLK 104 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444433333333333333
No 198
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=79.95 E-value=1.3e+02 Score=35.35 Aligned_cols=7 Identities=29% Similarity=0.496 Sum_probs=2.6
Q ss_pred HHHHHHh
Q 016990 294 AHLELLK 300 (379)
Q Consensus 294 ~qLdkLr 300 (379)
.++..|+
T Consensus 551 kqI~~Lk 557 (1195)
T KOG4643|consen 551 KQIQSLK 557 (1195)
T ss_pred HHHHHHH
Confidence 3333333
No 199
>PRK11281 hypothetical protein; Provisional
Probab=79.72 E-value=57 Score=38.51 Aligned_cols=27 Identities=15% Similarity=0.350 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016990 178 SDKLDKEVDDVTRDIEAYEACLQRLEG 204 (379)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~ 204 (379)
.+.|+++++++.++.....+-|+++++
T Consensus 82 ~~~L~k~l~~Ap~~l~~a~~~Le~Lk~ 108 (1113)
T PRK11281 82 TEQLKQQLAQAPAKLRQAQAELEALKD 108 (1113)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 445666666666666666666666654
No 200
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=79.28 E-value=61 Score=37.14 Aligned_cols=11 Identities=36% Similarity=0.760 Sum_probs=7.1
Q ss_pred HHHHHHHHHHh
Q 016990 193 EAYEACLQRLE 203 (379)
Q Consensus 193 d~Y~~fL~~L~ 203 (379)
+.|+.++++|.
T Consensus 903 ~~~e~~~~~l~ 913 (1259)
T KOG0163|consen 903 KNYEKLVKRLD 913 (1259)
T ss_pred HHHHHHHHHhh
Confidence 34677777665
No 201
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=78.97 E-value=22 Score=37.75 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 016990 181 LDKEVDDVTRDIEAYEACLQRLEG 204 (379)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~~L~~ 204 (379)
+...++.+..|...|..+|.+-++
T Consensus 251 ~~~hi~~l~~EveRlrt~l~~Aqk 274 (552)
T KOG2129|consen 251 EKLHIDKLQAEVERLRTYLSRAQK 274 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455556666666666665544
No 202
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=78.71 E-value=65 Score=39.82 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 221 KIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (379)
Q Consensus 221 ~Le~EE~~L~~eLeelEkE~~~l~~el~~le 251 (379)
.|.....++.++|+.+..+...+..++..+.
T Consensus 126 ~l~~~le~~~~ele~l~~~n~~l~~ql~ss~ 156 (1822)
T KOG4674|consen 126 QLMELLERQKAELEALESENKDLNDQLKSST 156 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555544444444433
No 203
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=78.61 E-value=1.3e+02 Score=34.38 Aligned_cols=12 Identities=25% Similarity=0.368 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 016990 183 KEVDDVTRDIEA 194 (379)
Q Consensus 183 ~qle~~~~E~d~ 194 (379)
.++.....|..+
T Consensus 294 ~eL~rk~~E~~~ 305 (775)
T PF10174_consen 294 LELSRKKSELEA 305 (775)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 204
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=78.56 E-value=41 Score=29.81 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 016990 179 DKLDKEVDDVTRDIEAYEACLQRLE 203 (379)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (379)
+.|+.++..+.-+++.+..-|+.++
T Consensus 16 QqLq~ql~~~~~qk~~le~qL~E~~ 40 (119)
T COG1382 16 QQLQQQLQKVILQKQQLEAQLKEIE 40 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777776666543
No 205
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=78.32 E-value=82 Score=34.85 Aligned_cols=10 Identities=0% Similarity=0.165 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 016990 282 RDAISSKIEV 291 (379)
Q Consensus 282 ~~sl~~q~~~ 291 (379)
..++..+.+.
T Consensus 225 ~~~Lq~q~dq 234 (617)
T PF15070_consen 225 AQSLQEQRDQ 234 (617)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 206
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=77.99 E-value=81 Score=33.69 Aligned_cols=8 Identities=25% Similarity=1.016 Sum_probs=4.1
Q ss_pred ChhhHHHH
Q 016990 334 EWDEINAA 341 (379)
Q Consensus 334 ~W~EINAA 341 (379)
.|+|+-.-
T Consensus 386 ~~~elE~r 393 (511)
T PF09787_consen 386 SWNELESR 393 (511)
T ss_pred CcHhHHHH
Confidence 46665433
No 207
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=77.92 E-value=28 Score=32.54 Aligned_cols=31 Identities=32% Similarity=0.444 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 221 KIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (379)
Q Consensus 221 ~Le~EE~~L~~eLeelEkE~~~l~~el~~le 251 (379)
.++....+|.++++.++.+.+++.+++...+
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~ 96 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAK 96 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666666666655555553
No 208
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.91 E-value=81 Score=36.17 Aligned_cols=10 Identities=40% Similarity=0.358 Sum_probs=5.7
Q ss_pred CCCCccceEE
Q 016990 103 GKAMDESFVV 112 (379)
Q Consensus 103 ~~~~~eSfV~ 112 (379)
++.|.-|||+
T Consensus 126 p~~m~~s~v~ 135 (1118)
T KOG1029|consen 126 PRRMSSSPVV 135 (1118)
T ss_pred ccccCCCccC
Confidence 4455566665
No 209
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=77.90 E-value=89 Score=33.68 Aligned_cols=28 Identities=32% Similarity=0.417 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 234 EETEKQNAEVNAELKELELKSKRFKELE 261 (379)
Q Consensus 234 eelEkE~~~l~~el~~le~e~~~L~eeE 261 (379)
+.|++...+|.+...+++.+.+.+++.+
T Consensus 97 e~Lekre~~Le~ke~~L~~re~eLee~~ 124 (514)
T TIGR03319 97 ESLDKKEENLEKKEKELSNKEKNLDEKE 124 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 210
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=77.90 E-value=70 Score=31.01 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=14.5
Q ss_pred ecccccCCCCCCCCChhh
Q 016990 320 INNFRLGRLPKIPVEWDE 337 (379)
Q Consensus 320 INgfRLGrlp~~~V~W~E 337 (379)
|+...-|.-|..||++.|
T Consensus 244 v~~~~tG~~~P~~~~fE~ 261 (261)
T cd07674 244 AESKGTGKERPGPVGFEE 261 (261)
T ss_pred HHhCCCCCCCCCCCCCCC
Confidence 788888998888888754
No 211
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=77.90 E-value=1.2e+02 Score=33.62 Aligned_cols=31 Identities=19% Similarity=0.037 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016990 270 NFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (379)
Q Consensus 270 ~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLr 300 (379)
..+.++.+++.+.+..+..|+....+++.++
T Consensus 373 ~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~ 403 (754)
T TIGR01005 373 EQQVDLDALQRDAAAKRQLYESYLTNYRQAA 403 (754)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355556666666666666666555555544
No 212
>COG1345 FliD Flagellar capping protein [Cell motility and secretion]
Probab=77.84 E-value=8.3 Score=41.18 Aligned_cols=49 Identities=24% Similarity=0.456 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 237 EKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSK 288 (379)
Q Consensus 237 EkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q 288 (379)
.++...++.+++.+. ++++..|++||..||.+...+...+.....|..+
T Consensus 428 ~~~i~~l~~~i~~~~---~rl~~~e~~~~~qf~~m~~~~~~m~sq~~~L~q~ 476 (483)
T COG1345 428 NKQIKSLDKDIKSLD---KRLEAAEERYKTQFNTLDDMMTQMNSQSSYLTQQ 476 (483)
T ss_pred hHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444 4778999999999999977766555444444333
No 213
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=77.82 E-value=40 Score=28.55 Aligned_cols=32 Identities=28% Similarity=0.504 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 222 IEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (379)
Q Consensus 222 Le~EE~~L~~eLeelEkE~~~l~~el~~le~e 253 (379)
|+...+.++..++.++++...+..++.+++.+
T Consensus 72 l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~ 103 (110)
T TIGR02338 72 LKEKKETLELRVKTLQRQEERLREQLKELQEK 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555555555444443
No 214
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=77.76 E-value=11 Score=36.87 Aligned_cols=34 Identities=24% Similarity=0.250 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 016990 271 FQFQLIAHQEERDAISSKIEVSQAHLELLKRTNV 304 (379)
Q Consensus 271 ~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrkTNV 304 (379)
|+....++++|+.....++...+.++++|++.||
T Consensus 91 FR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~ 124 (248)
T PF08172_consen 91 FRQRNAELEEELRKQQQTISSLRREVESLRADNV 124 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555555555555555555555554
No 215
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=77.64 E-value=98 Score=32.65 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=27.1
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 256 RFKELEE-RYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (379)
Q Consensus 256 ~L~eeEe-~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkL 299 (379)
++--+|+ ..-++.-.+..+|.+.+.|..+++.++.....-||--
T Consensus 345 qlaLEEKaaLrkerd~L~keLeekkreleql~~q~~v~~saLdtC 389 (442)
T PF06637_consen 345 QLALEEKAALRKERDSLAKELEEKKRELEQLKMQLAVKTSALDTC 389 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 3333343 4555666667777777777777777777666666643
No 216
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=77.57 E-value=1.4e+02 Score=34.15 Aligned_cols=18 Identities=28% Similarity=0.235 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016990 278 HQEERDAISSKIEVSQAH 295 (379)
Q Consensus 278 ~~eE~~sl~~q~~~~~~q 295 (379)
+.+..+..+.++...+..
T Consensus 383 l~d~~d~~e~ki~~Lq~k 400 (775)
T PF10174_consen 383 LRDMLDKKERKINVLQKK 400 (775)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 217
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=77.31 E-value=41 Score=29.28 Aligned_cols=26 Identities=15% Similarity=0.427 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016990 178 SDKLDKEVDDVTRDIEAYEACLQRLE 203 (379)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (379)
++.|..++..+......|...++.|+
T Consensus 22 ~~~l~~~~~~l~~~~~e~~~~~e~l~ 47 (140)
T PRK03947 22 IEALQQQLEELQASINELDTAKETLE 47 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666766665543
No 218
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=77.29 E-value=15 Score=38.27 Aligned_cols=74 Identities=18% Similarity=0.219 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 225 EERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (379)
Q Consensus 225 EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkL 299 (379)
+.++|.++++++..+.+++++.+..++.... ......+.-..+..+......+.+++..+..++...+.+++++
T Consensus 335 ~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 335 KLEELEEELEELKEELEKLKKNLKKLKKLKK-QGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444444444444444443211 1111112223445555555556666666666666666666666
No 219
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=77.22 E-value=20 Score=29.60 Aligned_cols=42 Identities=14% Similarity=0.326 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 226 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEF 268 (379)
Q Consensus 226 E~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~ 268 (379)
-++|.+++.+|...+..|-..+..++.|...|+.+. +|.++|
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN-~~Lq~Y 59 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESEN-EYLQQY 59 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 446888888888888888888888888887776554 465555
No 220
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=77.21 E-value=1.1e+02 Score=32.91 Aligned_cols=77 Identities=14% Similarity=0.191 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCc
Q 016990 232 AIEETEKQNAEVNAELKELEL---KSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDA 308 (379)
Q Consensus 232 eLeelEkE~~~l~~el~~le~---e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrkTNV~nd~ 308 (379)
.++++-...+++.+++..++. +.+.++++.++++++|..+-.+|.... .....+ ....-...|+..+.-+..
T Consensus 323 s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R---~~~a~~--l~~~v~~~l~~L~m~~~~ 397 (563)
T TIGR00634 323 SVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIR---RKAAER--LAKRVEQELKALAMEKAE 397 (563)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--HHHHHHHHHHhCCCCCcE
Confidence 444555555555555554443 345555556666666666655544332 222222 222334557777778889
Q ss_pred eeeee
Q 016990 309 FPIWH 313 (379)
Q Consensus 309 F~I~h 313 (379)
|+|..
T Consensus 398 f~v~~ 402 (563)
T TIGR00634 398 FTVEI 402 (563)
T ss_pred EEEEE
Confidence 98865
No 221
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=77.20 E-value=85 Score=31.61 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 016990 278 HQEERDAISSKIEVSQAHLELLKR 301 (379)
Q Consensus 278 ~~eE~~sl~~q~~~~~~qLdkLrk 301 (379)
+.+.+.++..||+.-..|++++-+
T Consensus 140 L~eKlK~l~eQye~rE~~~~~~~k 163 (309)
T PF09728_consen 140 LREKLKSLIEQYELREEHFEKLLK 163 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555666777766666666654
No 222
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=77.18 E-value=89 Score=31.84 Aligned_cols=13 Identities=15% Similarity=0.061 Sum_probs=9.5
Q ss_pred CCceeecccccCC
Q 016990 315 GEFGTINNFRLGR 327 (379)
Q Consensus 315 G~fGTINgfRLGr 327 (379)
.+|--.||.|.|-
T Consensus 246 ~py~Pf~g~~~~p 258 (309)
T TIGR00570 246 YPYQPLNIETEGP 258 (309)
T ss_pred CCcCCCCCCCCCC
Confidence 5666678888884
No 223
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=77.15 E-value=90 Score=34.53 Aligned_cols=20 Identities=10% Similarity=0.072 Sum_probs=11.2
Q ss_pred CCCCCCCC-ChhhHHHHHHHH
Q 016990 326 GRLPKIPV-EWDEINAAWGQA 345 (379)
Q Consensus 326 Grlp~~~V-~W~EINAAwGQ~ 345 (379)
...|..|+ ++.=.+.+.|-+
T Consensus 419 A~~P~~P~~P~~~~~l~~~~~ 439 (754)
T TIGR01005 419 ASVPSEPYFPKKGPIVGLAAV 439 (754)
T ss_pred CcCCCCCCCCchHHHHHHHHH
Confidence 34566666 445556666543
No 224
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=77.15 E-value=37 Score=33.11 Aligned_cols=20 Identities=5% Similarity=0.061 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016990 181 LDKEVDDVTRDIEAYEACLQ 200 (379)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~ 200 (379)
++.+++.++.+......-++
T Consensus 78 ~~~~l~~a~a~l~~~~~~~~ 97 (334)
T TIGR00998 78 AELALAKAEANLAALVRQTK 97 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444333333
No 225
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=76.82 E-value=27 Score=28.33 Aligned_cols=35 Identities=40% Similarity=0.419 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (379)
Q Consensus 220 ~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~ 254 (379)
..|+...+.+..+++.++++...+..++.+++.+.
T Consensus 65 ~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 65 EELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777777777777777776666543
No 226
>PRK07737 fliD flagellar capping protein; Validated
Probab=76.82 E-value=11 Score=40.26 Aligned_cols=51 Identities=16% Similarity=0.396 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 235 ETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSK 288 (379)
Q Consensus 235 elEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q 288 (379)
.|.++...++.++..++. +++..|++||+.|+.++.-+..++.....|..+
T Consensus 445 ~l~~~i~~l~~~i~~~~~---rl~~~e~ry~~qf~ale~~~s~mnsq~s~L~~~ 495 (501)
T PRK07737 445 AIGKDLNQIETQIDRFQD---RLKQIEDRYYKKFSAMEKAIQKANEQSMYLMNA 495 (501)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666654 567778899999999988777666554444333
No 227
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=76.20 E-value=49 Score=33.18 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 016990 279 QEERDAISSKIEVSQAHLELLK 300 (379)
Q Consensus 279 ~eE~~sl~~q~~~~~~qLdkLr 300 (379)
+.+.+.+++++..++.+|+.++
T Consensus 157 ~~~~~~~~~~l~~~~~~l~~~~ 178 (370)
T PRK11578 157 QAQIGTIDAQIKRNQASLDTAK 178 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555554443
No 228
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=76.13 E-value=1.1e+02 Score=33.52 Aligned_cols=70 Identities=14% Similarity=0.179 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAI 285 (379)
Q Consensus 216 ~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl 285 (379)
.+|.-+|..+...+.+++..+--|.+++.+-|....-...++..++++.-..|.+..-.+.+.++|+..+
T Consensus 232 ~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~l 301 (596)
T KOG4360|consen 232 QEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCL 301 (596)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555666666666666666665555555544433332222333333333333444444455566666654
No 229
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=75.97 E-value=75 Score=32.53 Aligned_cols=43 Identities=23% Similarity=0.228 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (379)
Q Consensus 215 l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L 257 (379)
+.+.+++++..|+.|-.+|+-|-++..++..++.+++...++.
T Consensus 257 it~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~ 299 (384)
T KOG0972|consen 257 ITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQA 299 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456667777788888888888888877777777777655444
No 230
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=75.81 E-value=1.2e+02 Score=32.65 Aligned_cols=26 Identities=8% Similarity=0.267 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 223 EEEERKLEAAIEETEKQNAEVNAELK 248 (379)
Q Consensus 223 e~EE~~L~~eLeelEkE~~~l~~el~ 248 (379)
+.+.+...+++..+++-.+++..+.+
T Consensus 91 e~~~~~~~ek~~~l~~~~~~L~~~F~ 116 (475)
T PRK10361 91 EAAQQHADDKIRQMINSEQRLSEQFE 116 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444443
No 231
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=75.78 E-value=9.3 Score=42.32 Aligned_cols=54 Identities=13% Similarity=0.257 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 232 AIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSK 288 (379)
Q Consensus 232 eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q 288 (379)
..+.++++...++.++++++ .+++..|++||+.|..++..+..++.....|..+
T Consensus 601 r~~~l~~~i~~l~~~i~~~e---~rl~~~e~rl~~QFtaME~~msqmnsqss~L~~~ 654 (661)
T PRK06664 601 KVKGLDERIADNNKKIEEYE---KKLESKERKLKGKYLTMDQTVKKMKEQSNYLKNF 654 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666665555 4678889999999999988777666555444443
No 232
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.73 E-value=1.4e+02 Score=33.19 Aligned_cols=18 Identities=28% Similarity=0.445 Sum_probs=12.8
Q ss_pred CCcchHHHHHHHHHHHHH
Q 016990 166 EQPLCLECMRVLSDKLDK 183 (379)
Q Consensus 166 DhPLC~ECtd~Lle~Ld~ 183 (379)
..|--+||-.+|.+..+-
T Consensus 553 SsP~~~E~~~lL~~a~~v 570 (741)
T KOG4460|consen 553 SAPPPEECLQLLSRATQV 570 (741)
T ss_pred cCCCcHHHHHHHHHHHHH
Confidence 345689999998875543
No 233
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=75.62 E-value=47 Score=27.80 Aligned_cols=33 Identities=30% Similarity=0.466 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (379)
Q Consensus 222 Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~ 254 (379)
|+.....+..+++.++++...+..++.+++.+.
T Consensus 68 Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l 100 (105)
T cd00632 68 LKERLETIELRIKRLERQEEDLQEKLKELQEKI 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555555555555544443
No 234
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=75.40 E-value=65 Score=29.33 Aligned_cols=29 Identities=14% Similarity=0.334 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016990 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLE 203 (379)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (379)
+..++.|+.++..+..-+..++.+++-|+
T Consensus 19 ~~qie~L~~~i~~l~~~~~e~~~~~~tl~ 47 (145)
T COG1730 19 QSQIESLQAQIAALNAAISELQTAIETLE 47 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777777777777654
No 235
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=75.14 E-value=20 Score=28.14 Aligned_cols=40 Identities=25% Similarity=0.422 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (379)
Q Consensus 216 ~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~ 255 (379)
.+|+.+....-..+...|++.|+....+..+|..++.+.+
T Consensus 17 ~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~e 56 (61)
T PF08826_consen 17 QEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEME 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555566666666666666666666655443
No 236
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=75.00 E-value=27 Score=32.06 Aligned_cols=29 Identities=28% Similarity=0.415 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 226 ERKLEAAIEETEKQNAEVNAELKELELKS 254 (379)
Q Consensus 226 E~~L~~eLeelEkE~~~l~~el~~le~e~ 254 (379)
.+++.+|++++++|.+..+.+++.++++.
T Consensus 156 ~~~~~~ei~~lk~el~~~~~~~~~LkkQ~ 184 (192)
T PF05529_consen 156 NKKLSEEIEKLKKELEKKEKEIEALKKQS 184 (192)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 237
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=74.79 E-value=1.3e+02 Score=32.57 Aligned_cols=150 Identities=19% Similarity=0.201 Sum_probs=67.3
Q ss_pred ccchHHHHHHHHHhh---cCCCCcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcc-------------
Q 016990 145 FHSTITVLKRAFEIA---TSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARD------------- 208 (379)
Q Consensus 145 lss~i~~l~~lFdIl---Ss~s~IDhPLC~ECtd~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~------------- 208 (379)
|..+++.+..-|+-. +... || .=+.-++..++.++..++...+.-=..++.++..-.+
T Consensus 166 Le~~L~~ie~~F~~f~~lt~~G--D~----~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~ 239 (560)
T PF06160_consen 166 LEKQLENIEEEFSEFEELTENG--DY----LEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREME 239 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHCC--CH----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 444555555555433 2222 33 2355566667777777666665543333333321100
Q ss_pred ----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 209 ----VLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDA 284 (379)
Q Consensus 209 ----~~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~s 284 (379)
.+...++.+++..+++........|..+ +...+...+..+..+...+-+.=++=-..++.....+..+.+-..-
T Consensus 240 ~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l--~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~ 317 (560)
T PF06160_consen 240 EEGYYLEHLDIEEEIEQIEEQLEEALALLKNL--ELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEH 317 (560)
T ss_pred HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 1122234444555555555444444433 2222333333333333333221111112233333344444455555
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 016990 285 ISSKIEVSQAHLELLKRT 302 (379)
Q Consensus 285 l~~q~~~~~~qLdkLrkT 302 (379)
+..+..+....+++|+..
T Consensus 318 ~~~~~~~l~~e~~~v~~s 335 (560)
T PF06160_consen 318 AKEQNKELKEELERVSQS 335 (560)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 566666666677777654
No 238
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=74.79 E-value=70 Score=29.42 Aligned_cols=54 Identities=26% Similarity=0.457 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQ 274 (379)
Q Consensus 221 ~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~q 274 (379)
.++.|.+.|...++.|+.+...+...+..+.....++.+.|.+.-++|+.++..
T Consensus 86 ~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er 139 (158)
T PF09744_consen 86 QWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHER 139 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHH
Confidence 456666677777777777777776666665555666777776666666666544
No 239
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=74.69 E-value=12 Score=37.68 Aligned_cols=18 Identities=33% Similarity=0.652 Sum_probs=10.6
Q ss_pred HHHHHHHHhhcCCCcc--eeE
Q 016990 346 CLLLHTMCQYFRPKFP--YPF 364 (379)
Q Consensus 346 ~LLL~tla~kl~~~Fq--YrL 364 (379)
+||.+....++|+ |. ||-
T Consensus 314 ~llaaa~isY~G~-f~~~~R~ 333 (344)
T PF12777_consen 314 SLLAAAFISYLGP-FTPEYRQ 333 (344)
T ss_dssp HHHHHHHHHCCCC-TSHHHHH
T ss_pred HHHHHHHHHHcCC-CCHHHHH
Confidence 4555566667776 53 663
No 240
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.22 E-value=1e+02 Score=34.23 Aligned_cols=140 Identities=14% Similarity=0.235 Sum_probs=75.2
Q ss_pred HHHHHhhcCCCCcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhchhcccCCHHHHHHHHHHHHHHHHHHHH
Q 016990 153 KRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQ-RLEGEARDVLSEADFLKEKLKIEEEERKLEA 231 (379)
Q Consensus 153 ~~lFdIlSs~s~IDhPLC~ECtd~Lle~Ld~qle~~~~E~d~Y~~fL~-~L~~~~~~~~~ee~l~~el~~Le~EE~~L~~ 231 (379)
.++-.||+..+..|. +|...|-. +-.-+++...+- .+-|. .++... .-..+++.+|.+++.....+..+
T Consensus 16 ~K~~kiL~~~~~~dk----d~~~aL~~-ls~~~~eN~~~~---RRnLr~~iE~~~--l~iN~e~l~ef~~i~~~l~~v~e 85 (655)
T KOG3758|consen 16 NKLSKILNNRTYSDK----DALAALRA-LSTFFEENSLRA---RRNLRSDIESRL--LKINEEFLKEFKEIKRRLDRVSE 85 (655)
T ss_pred HHHHHHHHhcccCcH----HHHHHHHH-HHHHHHhhhHHH---HhhhhhHHHHHH--HHhhHHHHHHHHHHHHHHHHHHH
Confidence 677788999998886 55555433 333343332222 11111 111110 00234566777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhc-cccccC
Q 016990 232 AIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAH---QEERDAISSKIEVSQAHLELLKR-TNVLND 307 (379)
Q Consensus 232 eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~---~eE~~sl~~q~~~~~~qLdkLrk-TNV~nd 307 (379)
.++.+..-.+.+..++.........+-+. ++.++.+...+ .+-..+....|...+..++.|+. +-|=++
T Consensus 86 ~v~km~~t~~~l~s~ls~~k~~t~dli~~-------t~~l~~e~~~le~r~kii~~Fl~~fqLs~~E~~~L~~~g~i~e~ 158 (655)
T KOG3758|consen 86 DVEKMANTCDKLKSNLSTSKATTQDLIQK-------TETLKEEAAQLELRKKIINAFLDNFQLSSEELDLLTESGPIDED 158 (655)
T ss_pred HHHHHHHHHHHHHHHHhhccchHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHhcCCcchHH
Confidence 77777777777766666555544444333 33333332222 22233445566677788888888 444444
Q ss_pred ce
Q 016990 308 AF 309 (379)
Q Consensus 308 ~F 309 (379)
.|
T Consensus 159 FF 160 (655)
T KOG3758|consen 159 FF 160 (655)
T ss_pred HH
Confidence 44
No 241
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=74.17 E-value=23 Score=30.06 Aligned_cols=71 Identities=25% Similarity=0.375 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016990 225 EERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (379)
Q Consensus 225 EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLr 300 (379)
|=.+|-+++..+-+...+|+.+|..+.....+....+ +.+.+|+.++..=-.++++. .+..+..+.|..++
T Consensus 23 EYk~L~~~v~~v~~~f~~L~~~l~~l~~~s~ey~~i~-~I~~eY~k~Kk~~p~y~~~K----~Rc~yL~~KL~HIK 93 (101)
T PF07303_consen 23 EYKELHAEVDAVSRRFQELDSELKRLPPGSQEYKRIA-QILQEYNKKKKRDPNYQEKK----KRCEYLHNKLSHIK 93 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-TTSHHHHHHH----HHHHHHHHTSHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHH-HHHHHHHHHHhcCccHHHHH----HHHHHHHHHHHHHH
Confidence 3445666677777777777777777777666777777 88899998863233344433 33444444454444
No 242
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=74.09 E-value=1.3e+02 Score=32.24 Aligned_cols=12 Identities=17% Similarity=0.357 Sum_probs=7.3
Q ss_pred HHHHHHHhcccc
Q 016990 293 QAHLELLKRTNV 304 (379)
Q Consensus 293 ~~qLdkLrkTNV 304 (379)
...+.+||.-|-
T Consensus 409 eqevkrLrq~nr 420 (502)
T KOG0982|consen 409 EQEVKRLRQPNR 420 (502)
T ss_pred HHHHHHhccccc
Confidence 345677776663
No 243
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=74.05 E-value=89 Score=33.76 Aligned_cols=32 Identities=16% Similarity=0.431 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHh
Q 016990 172 ECMRVLSDKLDKEVDDVTRDIEA-----YEACLQRLE 203 (379)
Q Consensus 172 ECtd~Lle~Ld~qle~~~~E~d~-----Y~~fL~~L~ 203 (379)
|=....+..|..++++++.|... |..|...+.
T Consensus 10 edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~ 46 (593)
T PF06248_consen 10 EDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQ 46 (593)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666666666666543 556655443
No 244
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=73.88 E-value=1e+02 Score=33.84 Aligned_cols=104 Identities=16% Similarity=0.287 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-------ccCceeeeec
Q 016990 242 EVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNV-------LNDAFPIWHD 314 (379)
Q Consensus 242 ~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrkTNV-------~nd~F~I~hd 314 (379)
.+...++.++......+..-.++-...+.+..+-.+..+.+..+..++.-.... +.|.|+ +...|+++|.
T Consensus 379 ~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~---mek~nLPGlPe~~l~l~~~~~~~ 455 (570)
T COG4477 379 ELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKRY---MEKSNLPGLPETFLSLFFTAGHE 455 (570)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHcCCCCCcHHHHHHHHhhhhH
Confidence 344445555555555555555555666666555555555554444444333332 344554 4455666654
Q ss_pred CCceeecccccCCCCCCCCChhhHHHHHHHHHHHHHHHHh
Q 016990 315 GEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQ 354 (379)
Q Consensus 315 G~fGTINgfRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~ 354 (379)
=. .+++ +|++ +|+.-..+++-|-++.-.++++..
T Consensus 456 i~-~l~~--eLse---~pinm~~v~~~v~~a~~~m~~l~~ 489 (570)
T COG4477 456 IQ-DLMK--ELSE---VPINMEAVSALVDIATEDMNTLED 489 (570)
T ss_pred HH-HHHH--HHhh---cCCcHHHHHHHHHHHHHHHHHHHH
Confidence 10 0111 3444 688999999999999888876654
No 245
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=73.87 E-value=1.4e+02 Score=34.52 Aligned_cols=50 Identities=28% Similarity=0.392 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhcCCCCcCCcchHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 016990 149 ITVLKRAFEIATSQTQVEQPLCLECMRVL-----SDKLDKEVDDVTRDIEAYEACL 199 (379)
Q Consensus 149 i~~l~~lFdIlSs~s~IDhPLC~ECtd~L-----le~Ld~qle~~~~E~d~Y~~fL 199 (379)
-+++.+.-. ||++-+.=-|+=..|+..= ++.+-+.+++..++.++...-|
T Consensus 228 q~vl~ev~Q-Lss~~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L 282 (1265)
T KOG0976|consen 228 QKVLKEVMQ-LSSQKQTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVL 282 (1265)
T ss_pred HHHHHHHHH-HHHhHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444433 4666667778888897543 3333344555555555544333
No 246
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=73.62 E-value=44 Score=26.62 Aligned_cols=33 Identities=24% Similarity=0.213 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016990 268 FNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (379)
Q Consensus 268 ~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLr 300 (379)
...+-.++...-.+...+....+....+|+.++
T Consensus 35 Rd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 35 RDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444455555555555555443
No 247
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=73.57 E-value=14 Score=30.44 Aligned_cols=11 Identities=18% Similarity=0.443 Sum_probs=7.5
Q ss_pred HHHHHHHHHHH
Q 016990 263 RYWQEFNNFQF 273 (379)
Q Consensus 263 ~~w~e~n~~q~ 273 (379)
+..++||+++-
T Consensus 43 ~lLheYNeiKD 53 (83)
T PF07061_consen 43 KLLHEYNEIKD 53 (83)
T ss_pred HHHHHHhHHHH
Confidence 56678887753
No 248
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=73.46 E-value=1.5e+02 Score=33.91 Aligned_cols=31 Identities=19% Similarity=0.355 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 267 EFNNFQFQLIAHQEERDAISSKIEVSQAHLE 297 (379)
Q Consensus 267 e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLd 297 (379)
+++.++-.|...+.|.-+|+..+...+..|+
T Consensus 135 ~~~~l~~~l~~~eken~~Lkye~~~~~kele 165 (769)
T PF05911_consen 135 EIEDLMARLESTEKENSSLKYELHVLSKELE 165 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555444444444443
No 249
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=73.38 E-value=1.3e+02 Score=32.46 Aligned_cols=45 Identities=11% Similarity=0.211 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccccCceeeeecCC
Q 016990 272 QFQLIAHQEERDAISSKIEVSQAHLELLKR-TNVLNDAFPIWHDGE 316 (379)
Q Consensus 272 q~qL~~~~eE~~sl~~q~~~~~~qLdkLrk-TNV~nd~F~I~hdG~ 316 (379)
+.+..-++.+++..+.|+..|..--+||+| .+-+=-+||.-|...
T Consensus 346 E~E~q~~~kkrqnaekql~~Ake~~eklkKKrssv~gtl~vahgss 391 (575)
T KOG4403|consen 346 EVEVQYYNKKRQNAEKQLKEAKEMAEKLKKKRSSVFGTLHVAHGSS 391 (575)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcchheeeeeccccc
Confidence 445555677788888999999999999975 455667888887643
No 250
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=73.35 E-value=1e+02 Score=30.74 Aligned_cols=29 Identities=7% Similarity=0.304 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 222 IEEEERKLEAAIEETEKQNAEVNAELKEL 250 (379)
Q Consensus 222 Le~EE~~L~~eLeelEkE~~~l~~el~~l 250 (379)
+..+.....+.|..+..+.+.|+..|+..
T Consensus 174 ~~~~~~~~~~~l~~l~~de~~Le~KIekk 202 (267)
T PF10234_consen 174 VQQQLQQTQQQLNNLASDEANLEAKIEKK 202 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555444433
No 251
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=73.29 E-value=1.5e+02 Score=33.04 Aligned_cols=125 Identities=15% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhccc------------CCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 016990 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDV------------LSEADFLKEKLK-IEEEERKLEAAIEETEKQNAEVN 244 (379)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~------------~~ee~l~~el~~-Le~EE~~L~~eLeelEkE~~~l~ 244 (379)
++.=++.+..+++|+..-..-+..-....... ...+....+|.. ++..+..+..+++..-.+...|.
T Consensus 244 Le~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le 323 (629)
T KOG0963|consen 244 LEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALE 323 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHhccc
Q 016990 245 AELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDA------------------ISSKIEVSQAHLELLKRTN 303 (379)
Q Consensus 245 ~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~s------------------l~~q~~~~~~qLdkLrkTN 303 (379)
++++....+.+.+.+.-+.| .+|++.+.+|.-+..---+ |..+-...++++..||.+|
T Consensus 324 ~~l~~~~~~leel~~kL~~~-sDYeeIK~ELsiLk~ief~~se~a~~~~~~~~~leslLl~knr~lq~e~a~Lr~~n 399 (629)
T KOG0963|consen 324 KELKAKISELEELKEKLNSR-SDYEEIKKELSILKAIEFGDSEEANDEDETAKTLESLLLEKNRKLQNENASLRVAN 399 (629)
T ss_pred HHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHHHhhcCCcccccccccccchHHHHHHHHHhhhhHHHHHHhccc
No 252
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=73.23 E-value=45 Score=26.57 Aligned_cols=38 Identities=16% Similarity=0.208 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 254 SKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEV 291 (379)
Q Consensus 254 ~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~ 291 (379)
.+.|..+-..+-+.....-.+...+.+|.+.+..+++.
T Consensus 28 ~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 28 NKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444445555555444443
No 253
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=73.15 E-value=30 Score=38.57 Aligned_cols=41 Identities=29% Similarity=0.306 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEE 262 (379)
Q Consensus 222 Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe 262 (379)
|.+++..+...|+++.++..+-.+|+.++..+.+.+-.+..
T Consensus 101 Lke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~ 141 (660)
T KOG4302|consen 101 LKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELG 141 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555666666666666666666666666555555544443
No 254
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=72.89 E-value=59 Score=27.70 Aligned_cols=89 Identities=13% Similarity=0.219 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 179 DKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADF---LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (379)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l---~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~ 255 (379)
+....+++.+...+..|..-+...... .++...+ ..=+..|..........+..++.+.+.....+.+...+.+
T Consensus 30 ~~~~~~l~~l~~~~~~~~~~~~~~~~~---g~~~~~l~~~~~f~~~l~~~i~~q~~~l~~~~~~~e~~r~~l~~a~~~~k 106 (141)
T TIGR02473 30 ERLETQLQQLIKYREEYEQQALEKVGA---GTSALELSNYQRFIRQLDQRIQQQQQELALLQQEVEAKRERLLEARRELK 106 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555554433322211 1232322 2223446666667777788888888888888888888888
Q ss_pred HHHHHHHHHHHHHHH
Q 016990 256 RFKELEERYWQEFNN 270 (379)
Q Consensus 256 ~L~eeEe~~w~e~n~ 270 (379)
.++.+.++...++..
T Consensus 107 ~lekL~ek~~~~~~~ 121 (141)
T TIGR02473 107 ALEKLKEKKQKEYRA 121 (141)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888777766555544
No 255
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=72.83 E-value=1.6e+02 Score=32.78 Aligned_cols=109 Identities=26% Similarity=0.331 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhch---hcccCC-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 173 CMRVLSDKLDKEVDDVTRDIEAYE---ACLQRLEGE---ARDVLS-EADF-LKEKLKIEEEERKLEAAIEETEKQNAEVN 244 (379)
Q Consensus 173 Ctd~Lle~Ld~qle~~~~E~d~Y~---~fL~~L~~~---~~~~~~-ee~l-~~el~~Le~EE~~L~~eLeelEkE~~~l~ 244 (379)
=+|+| .|-++++.+..|.-... ..|+-++.+ .-+.++ +.++ .-|++..+.-..+|+..|.++|.|+..+.
T Consensus 293 gAdll--GMGrEVeNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k 370 (832)
T KOG2077|consen 293 GADLL--GMGREVENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAK 370 (832)
T ss_pred hhhhh--cchHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555 77777777766655443 333322221 011122 3332 23444444445556666666666666666
Q ss_pred HHHHHHHHH-------------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 016990 245 AELKELELK-------------SKRFKELEE-RYWQEFNNFQFQLIAHQEERD 283 (379)
Q Consensus 245 ~el~~le~e-------------~~~L~eeEe-~~w~e~n~~q~qL~~~~eE~~ 283 (379)
++......+ .+++..-|- +..-++|.++-.|+++|+-..
T Consensus 371 ~ea~~ar~~~~~~e~ddiPmAqRkRFTRvEMaRVLMeRNqYKErLMELqEavr 423 (832)
T KOG2077|consen 371 AEAEDARQKAKDDEDDDIPMAQRKRFTRVEMARVLMERNQYKERLMELQEAVR 423 (832)
T ss_pred HHHHHHHHhhcccccccccHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 665555332 234554444 788899999999999987543
No 256
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=72.83 E-value=14 Score=30.89 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Q 016990 280 EERDAISSKIEVSQAHLELLKRTN 303 (379)
Q Consensus 280 eE~~sl~~q~~~~~~qLdkLrkTN 303 (379)
+|..++..++.....+|..|++-|
T Consensus 43 ~E~~~l~~~l~~~E~eL~~LrkEN 66 (85)
T PF15188_consen 43 KELNELKEKLENNEKELKLLRKEN 66 (85)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhh
Confidence 555566666666666677777655
No 257
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=72.73 E-value=73 Score=28.71 Aligned_cols=30 Identities=27% Similarity=0.448 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 222 IEEEERKLEAAIEETEKQNAEVNAELKELE 251 (379)
Q Consensus 222 Le~EE~~L~~eLeelEkE~~~l~~el~~le 251 (379)
+..+...|..++.+++++...+..++..+.
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L~ 106 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELASLS 106 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444444443
No 258
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=72.70 E-value=84 Score=29.39 Aligned_cols=55 Identities=31% Similarity=0.391 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 016990 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF-KELEERYWQEFNNFQFQ 274 (379)
Q Consensus 220 ~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L-~eeEe~~w~e~n~~q~q 274 (379)
..++.+...|..++++|+.+...+....+.++...... ..+++.+-.+...++.+
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~ 178 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQ 178 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666677777777777777777766666655443 33333444444444443
No 259
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=72.70 E-value=1.1e+02 Score=30.70 Aligned_cols=9 Identities=11% Similarity=0.438 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 016990 180 KLDKEVDDV 188 (379)
Q Consensus 180 ~Ld~qle~~ 188 (379)
+|...|+++
T Consensus 170 WLR~~L~Ei 178 (269)
T PF05278_consen 170 WLRSKLEEI 178 (269)
T ss_pred HHHHHHHHH
Confidence 333333333
No 260
>PRK14160 heat shock protein GrpE; Provisional
Probab=72.48 E-value=43 Score=32.24 Aligned_cols=30 Identities=10% Similarity=-0.006 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcceeEEeccce
Q 016990 338 INAAWGQACLLLHTMCQYFRPKFPYPFFTSLCF 370 (379)
Q Consensus 338 INAAwGQ~~LLL~tla~kl~~~FqYrLvp~gs~ 370 (379)
|=.++-.+.=-|..+-.++|++ +|-|.|-|
T Consensus 137 l~~Gv~mi~kql~~vL~k~GVe---~I~~~G~F 166 (211)
T PRK14160 137 LKKGIEMTVKQFKTSLEKLGVE---EISTEGEF 166 (211)
T ss_pred HHHHHHHHHHHHHHHHHHCCCE---EeCCCCCC
Confidence 4456666766666777777774 34455533
No 261
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=72.44 E-value=1.4e+02 Score=31.75 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 243 VNAELKELELKSKRFKELEERYWQEFNNFQF 273 (379)
Q Consensus 243 l~~el~~le~e~~~L~eeEe~~w~e~n~~q~ 273 (379)
+.+++...+.+..+++++|++.|..-|.-++
T Consensus 370 ~~~rl~~ie~~~~~l~e~e~~lwffen~~~i 400 (429)
T PF10037_consen 370 RKERLEEIEKEDKELYEQEQQLWFFENEDKI 400 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5677778888888999999999987777554
No 262
>PRK08724 fliD flagellar capping protein; Validated
Probab=72.02 E-value=20 Score=40.01 Aligned_cols=51 Identities=22% Similarity=0.279 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 234 EETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISS 287 (379)
Q Consensus 234 eelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~ 287 (379)
+.|.++...++.++..++ .+++..|++||+.|+.+...+..++....+|.+
T Consensus 620 ~sL~~~i~~l~dqi~~Le---~Rle~~E~Ry~~QFtAMD~~msqMnsQ~s~L~s 670 (673)
T PRK08724 620 KSLREQNYRLNDDQVALD---RRMESLEKRTHAKFAAMQDATGKMQGQLGGMMN 670 (673)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666555 356788899999999998877766655554443
No 263
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=71.97 E-value=1.8e+02 Score=34.25 Aligned_cols=31 Identities=23% Similarity=0.459 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 222 IEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (379)
Q Consensus 222 Le~EE~~L~~eLeelEkE~~~l~~el~~le~ 252 (379)
|.++..+++..|....++++.+..++.+++.
T Consensus 481 l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~ 511 (1041)
T KOG0243|consen 481 LKEEKEKLKSKLQNKNKELESLKEELQQAKA 511 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555555554443
No 264
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=71.86 E-value=27 Score=33.57 Aligned_cols=48 Identities=10% Similarity=0.130 Sum_probs=25.0
Q ss_pred HHHHHHhhcCCCCcCCcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 152 LKRAFEIATSQTQVEQPLC--LECMRVLSDKLDKEVDDVTRDIEAYEACLQ 200 (379)
Q Consensus 152 l~~lFdIlSs~s~IDhPLC--~ECtd~Lle~Ld~qle~~~~E~d~Y~~fL~ 200 (379)
+....+-|.+-..|++--- +|=|+...+ ++.+++..+.+.+.|...|+
T Consensus 107 ~~~~l~~l~~~g~v~~~~~~~~DvT~~y~D-~~arl~~l~~~~~rl~~ll~ 156 (262)
T PF14257_consen 107 FDSFLDELSELGKVTSRNISSEDVTEQYVD-LEARLKNLEAEEERLLELLE 156 (262)
T ss_pred HHHHHHHHhccCceeeeeccccchHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 4444444444334443222 344555554 56666666666666666665
No 265
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=71.82 E-value=77 Score=30.31 Aligned_cols=20 Identities=20% Similarity=0.385 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016990 276 IAHQEERDAISSKIEVSQAH 295 (379)
Q Consensus 276 ~~~~eE~~sl~~q~~~~~~q 295 (379)
..+.+.++.|+.|......+
T Consensus 163 ~~v~~Dl~~ie~QV~~Le~~ 182 (195)
T PF12761_consen 163 KSVREDLDTIEEQVDGLESH 182 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 266
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=71.79 E-value=1.2e+02 Score=30.93 Aligned_cols=32 Identities=9% Similarity=0.116 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 016990 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGE 205 (379)
Q Consensus 174 td~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~ 205 (379)
+....+.|+.|+..+.++.+..+.-|+..+.+
T Consensus 169 ~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~ 200 (444)
T TIGR03017 169 AQKAALWFVQQIAALREDLARAQSKLSAYQQE 200 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44457778888888888877777777666543
No 267
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=71.75 E-value=6.3 Score=43.55 Aligned_cols=125 Identities=26% Similarity=0.325 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccC-CHHH--HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVL-SEAD--FLKEKL----KIEEEERKLEAAIEETEKQNAEVNAEL 247 (379)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~-~ee~--l~~el~----~Le~EE~~L~~eLeelEkE~~~l~~el 247 (379)
..++..|+++..-+.+||+.|..-|+.+..+..... +..+ -.++.. .+.....++...|+.++++........
T Consensus 398 ~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ele~~l~~l~~~l~~~k~~~ 477 (722)
T PF05557_consen 398 KKLIRRLERQKALATKERDYLRAQLKSYDKEETTMNPSEQDTQRIKEIEDLEQLVDEYKAELEAQLEELEEELSEQKQRN 477 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 456777888888899999999988887765432110 1000 000111 112222223334444444433322222
Q ss_pred HHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 248 KELELKSKRFKELE---E----RYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (379)
Q Consensus 248 ~~le~e~~~L~eeE---e----~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkL 299 (379)
..++.+...+.+.. . .+=..++.++.+...++.+...+..++.....+|+++
T Consensus 478 ~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~ 536 (722)
T PF05557_consen 478 ETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESELEKL 536 (722)
T ss_dssp ----------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22222222221111 1 1334566677777777777777777777777777763
No 268
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=71.47 E-value=1.1e+02 Score=31.04 Aligned_cols=35 Identities=23% Similarity=0.257 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELK 248 (379)
Q Consensus 214 ~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~ 248 (379)
.|..|+..|--+-.-|...|+++|....++..++.
T Consensus 102 QLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~ 136 (302)
T PF09738_consen 102 QLDNEKSALMYQVDLLKDKLEELEETLAQLQREYR 136 (302)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555556666666666666665554
No 269
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=70.77 E-value=2.3e+02 Score=33.77 Aligned_cols=18 Identities=28% Similarity=-0.014 Sum_probs=11.9
Q ss_pred CCChhhHHHHHHHHHHHH
Q 016990 332 PVEWDEINAAWGQACLLL 349 (379)
Q Consensus 332 ~V~W~EINAAwGQ~~LLL 349 (379)
-..--|||.+++|...=.
T Consensus 260 i~~~~~~N~~Ls~~L~~~ 277 (1109)
T PRK10929 260 IVAQFKINRELSQALNQQ 277 (1109)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345568899988865433
No 270
>PF13514 AAA_27: AAA domain
Probab=70.43 E-value=1.2e+02 Score=35.42 Aligned_cols=23 Identities=13% Similarity=0.079 Sum_probs=13.6
Q ss_pred CCCChhhHHHHHHHHHHHHHHHH
Q 016990 331 IPVEWDEINAAWGQACLLLHTMC 353 (379)
Q Consensus 331 ~~V~W~EINAAwGQ~~LLL~tla 353 (379)
..|+..+.-.+---=+.|-.-||
T Consensus 1019 ~~~~~~~LS~GT~dQLYLALRLA 1041 (1111)
T PF13514_consen 1019 ERVPVEELSRGTRDQLYLALRLA 1041 (1111)
T ss_pred eEeeHHHhCHHHHHHHHHHHHHH
Confidence 56777777766655444444444
No 271
>KOG4796 consensus RNA polymerase II elongation factor [Transcription]
Probab=69.83 E-value=17 Score=39.52 Aligned_cols=55 Identities=27% Similarity=0.414 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 227 RKLEAAIEETEKQNAEVNAELK-ELELKSKRFKELEERYWQEFNNFQFQLIAHQEER 282 (379)
Q Consensus 227 ~~L~~eLeelEkE~~~l~~el~-~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~ 282 (379)
.+|-++++.+-....+|+++|+ .+-.-....++.|++.|++|..+.. --.+.+++
T Consensus 518 reLharve~vs~rF~~Lea~L~srls~gS~ey~~i~~qI~qEYeki~~-dp~y~eeK 573 (604)
T KOG4796|consen 518 RELHARVETVSRRFRQLEAQLKSRLSPGSPEYKQIEKQILQEYEKIRK-DPNYMEEK 573 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHhhc-CccHHHHH
Confidence 3455555666666666666666 4444445668889999999999984 34444444
No 272
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=69.82 E-value=2.3e+02 Score=33.28 Aligned_cols=18 Identities=28% Similarity=0.253 Sum_probs=9.6
Q ss_pred cCCCCCcccccccccccC
Q 016990 50 STMHGSSIHASNSVLGST 67 (379)
Q Consensus 50 ~~~~~s~~~~~~s~~~~~ 67 (379)
|++..|++.-+++++|..
T Consensus 103 ss~~tSla~Ss~kllg~~ 120 (1243)
T KOG0971|consen 103 SSPGTSLAASSEKLLGRR 120 (1243)
T ss_pred CCCCCChhhhhhhhhccc
Confidence 455555555555555544
No 273
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=69.27 E-value=38 Score=31.10 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016990 270 NFQFQLIAHQEERDAISSKIE 290 (379)
Q Consensus 270 ~~q~qL~~~~eE~~sl~~q~~ 290 (379)
+++.++...+.+.+.++.|.+
T Consensus 165 ~lk~el~~~~~~~~~LkkQ~~ 185 (192)
T PF05529_consen 165 KLKKELEKKEKEIEALKKQSE 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444443
No 274
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=69.24 E-value=16 Score=37.77 Aligned_cols=67 Identities=19% Similarity=0.325 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCceeeeecCC----c-eeecccc-cCCCCCCCCChhhHHHHH
Q 016990 274 QLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGE----F-GTINNFR-LGRLPKIPVEWDEINAAW 342 (379)
Q Consensus 274 qL~~~~eE~~sl~~q~~~~~~qLdkLrkTNV~nd~F~I~hdG~----f-GTINgfR-LGrlp~~~V~W~EINAAw 342 (379)
++.++++++.+++.++..+..-++.=...-++..++-|.+... | |+.+-+| ++ |+..+-|..|.-|.
T Consensus 274 k~~~~~~q~~~~~k~~~~~~~~~~~~~~~~~la~~l~~~~g~~~~yly~gs~~~~~~~~--~~~~l~~~~i~~a~ 346 (406)
T PF02388_consen 274 KLKELEEQLASLEKRIEEAEELIAEYGDEIPLAGALFIYYGDEAYYLYGGSDEEYRKFY--APYLLQWEAIKYAK 346 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-SEEEEEEEEEEEETTEEEEEEEEE-CGCGGCT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEEEEEEEECCEEEEEECccchhhHhcC--cchHHHHHHHHHHH
Confidence 3344445555555555555555555555568888888877652 2 4555544 22 44556666665443
No 275
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=69.18 E-value=2e+02 Score=32.44 Aligned_cols=38 Identities=18% Similarity=0.373 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 016990 267 EFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNV 304 (379)
Q Consensus 267 e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrkTNV 304 (379)
.|++....+.-+...+.-++..+......|.++++-++
T Consensus 588 ~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~ 625 (698)
T KOG0978|consen 588 QYAELELELEIEKFKRKRLEEELERLKRKLERLKKEES 625 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 33333333333333333344444444444555555444
No 276
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=69.13 E-value=1.9e+02 Score=32.03 Aligned_cols=62 Identities=26% Similarity=0.241 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 223 EEEERKLEAAIEETEKQNAEVNAELKELELKS-------KRFKELEERYWQEFNNFQFQLIAHQEERDA 284 (379)
Q Consensus 223 e~EE~~L~~eLeelEkE~~~l~~el~~le~e~-------~~L~eeEe~~w~e~n~~q~qL~~~~eE~~s 284 (379)
+.++..+.++++.|++++.+.+.++..+.... .+-++...---++|...+.++.++|++.+.
T Consensus 413 ~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~ 481 (607)
T KOG0240|consen 413 EEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEA 481 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777776666655433222 111122222334555555555555554443
No 277
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=68.99 E-value=59 Score=26.16 Aligned_cols=36 Identities=14% Similarity=0.289 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016990 266 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (379)
Q Consensus 266 ~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrk 301 (379)
..|+.++..+.....+...|.+++.....++..|..
T Consensus 28 ~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ 63 (70)
T PF04899_consen 28 SSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSE 63 (70)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888887777777777777777777766666643
No 278
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=68.98 E-value=1.1e+02 Score=29.05 Aligned_cols=44 Identities=16% Similarity=0.312 Sum_probs=22.5
Q ss_pred HHHHHHHhhcCCC-----CcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 151 VLKRAFEIATSQT-----QVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYE 196 (379)
Q Consensus 151 ~l~~lFdIlSs~s-----~IDhPLC~ECtd~Lle~Ld~qle~~~~E~d~Y~ 196 (379)
++++|++|++++- .+.-|. .=.+.++..|...+..+........
T Consensus 3 if~Rl~~iv~a~~n~~~dk~EDP~--~~l~q~irem~~~l~~ar~~lA~~~ 51 (219)
T TIGR02977 3 IFSRFADIVNSNLNALLDKAEDPE--KMIRLIIQEMEDTLVEVRTTSARTI 51 (219)
T ss_pred HHHHHHHHHHHHHHHHHHhccCHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555554321 122243 2456666777766666555444443
No 279
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=68.75 E-value=2.2e+02 Score=32.57 Aligned_cols=33 Identities=36% Similarity=0.395 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (379)
Q Consensus 222 Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~ 254 (379)
.+.|...|...|+.+|||...|.-|+.-+.+|.
T Consensus 132 ~e~~~~~l~~~l~~~eken~~Lkye~~~~~kel 164 (769)
T PF05911_consen 132 AEAEIEDLMARLESTEKENSSLKYELHVLSKEL 164 (769)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555555443
No 280
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=68.71 E-value=92 Score=34.91 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=9.4
Q ss_pred HHHHhh-cCCCCcCCcchHH
Q 016990 154 RAFEIA-TSQTQVEQPLCLE 172 (379)
Q Consensus 154 ~lFdIl-Ss~s~IDhPLC~E 172 (379)
+|-+-+ |.-+.++++-|-+
T Consensus 86 ~i~eWles~~p~~~~~s~~~ 105 (861)
T KOG1899|consen 86 RIAEWLESPSPSMSTVSCPE 105 (861)
T ss_pred HHHHHHhccCCCCCCccCCc
Confidence 444444 3344566666643
No 281
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=68.54 E-value=70 Score=26.84 Aligned_cols=32 Identities=28% Similarity=0.418 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 222 IEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (379)
Q Consensus 222 Le~EE~~L~~eLeelEkE~~~l~~el~~le~e 253 (379)
++.....+..+++.++++...+.+++..++..
T Consensus 92 l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~ 123 (129)
T cd00890 92 LKKRLETLEKQIEKLEKQLEKLQDQITELQEE 123 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555543
No 282
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=68.49 E-value=2.4e+02 Score=32.87 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 223 EEEERKLEAAIEETEKQNAEVNAE 246 (379)
Q Consensus 223 e~EE~~L~~eLeelEkE~~~l~~e 246 (379)
|.|.+.+..++.++++++..-..+
T Consensus 140 etelE~~~srlh~le~eLsAk~~e 163 (1265)
T KOG0976|consen 140 EIEIENLNSRLHKLEDELSAKAHD 163 (1265)
T ss_pred HHHHHhhHHHHHHHHHHHhhhhHH
Confidence 333334444444444444433333
No 283
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=68.35 E-value=38 Score=34.24 Aligned_cols=15 Identities=20% Similarity=0.554 Sum_probs=12.3
Q ss_pred CcCCcchHHHHHHHH
Q 016990 164 QVEQPLCLECMRVLS 178 (379)
Q Consensus 164 ~IDhPLC~ECtd~Ll 178 (379)
.=-|++|+.|.|.|.
T Consensus 22 ~C~H~lCEsCvd~iF 36 (300)
T KOG3800|consen 22 ECGHRLCESCVDRIF 36 (300)
T ss_pred cccchHHHHHHHHHH
Confidence 677899999988884
No 284
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=68.20 E-value=18 Score=38.77 Aligned_cols=13 Identities=23% Similarity=0.426 Sum_probs=10.3
Q ss_pred eeEEeccceeeee
Q 016990 362 YPFFTSLCFLVIV 374 (379)
Q Consensus 362 YrLvp~gs~~~~~ 374 (379)
.-.+|.|||.+.|
T Consensus 211 ~~YiPsgSf~~av 223 (475)
T PRK13729 211 LPYIPSGSFAKAM 223 (475)
T ss_pred CceeCCCCeEEEE
Confidence 5679999998754
No 285
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=68.10 E-value=80 Score=30.36 Aligned_cols=18 Identities=11% Similarity=0.316 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016990 257 FKELEERYWQEFNNFQFQ 274 (379)
Q Consensus 257 L~eeEe~~w~e~n~~q~q 274 (379)
++++-++......+|-++
T Consensus 96 fekekqq~~~~~t~~Lwd 113 (228)
T PRK06800 96 FQKEQQETAYEWTELLWD 113 (228)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333444444455443
No 286
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=68.04 E-value=1.3e+02 Score=29.68 Aligned_cols=31 Identities=23% Similarity=0.246 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHH-HH---HHHHHHHHHHH
Q 016990 171 LECMRVLSDKLDKEVDDV-TR---DIEAYEACLQR 201 (379)
Q Consensus 171 ~ECtd~Lle~Ld~qle~~-~~---E~d~Y~~fL~~ 201 (379)
.++--..++.+..+|... .+ =-..|..||+.
T Consensus 150 ~~~~~~~~~~~~~~Y~~~p~Kg~ka~evL~~fl~~ 184 (297)
T PF02841_consen 150 YQLFLKELDELEKEYEQEPGKGVKAEEVLQEFLQS 184 (297)
T ss_dssp HHHHHHHHHHHHHHHHHSS---TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHH
Confidence 455555666666666554 21 22346667665
No 287
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=67.81 E-value=2.6e+02 Score=33.11 Aligned_cols=11 Identities=18% Similarity=0.232 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 016990 181 LDKEVDDVTRD 191 (379)
Q Consensus 181 Ld~qle~~~~E 191 (379)
|.++.++++..
T Consensus 413 Ls~k~e~Leer 423 (1195)
T KOG4643|consen 413 LSKKHEILEER 423 (1195)
T ss_pred HhHHHHHHHHH
Confidence 33334444333
No 288
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=67.76 E-value=1.4e+02 Score=33.30 Aligned_cols=46 Identities=17% Similarity=0.277 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 228 KLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQF 273 (379)
Q Consensus 228 ~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~ 273 (379)
+|.++++.|..+...++.+|+..+.+....+..=++.|.+..+.+.
T Consensus 83 ~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~ 128 (632)
T PF14817_consen 83 ELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRH 128 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444455555555444
No 289
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=67.64 E-value=34 Score=33.73 Aligned_cols=56 Identities=16% Similarity=0.204 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNN 270 (379)
Q Consensus 215 l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~ 270 (379)
..+..++-+..+.+....+..||+|.+.+..++++++.+...+.....+||+..+.
T Consensus 206 ~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~~~~~~~ 261 (269)
T KOG3119|consen 206 VRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQLPKPGGA 261 (269)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence 34444444555677788888999999999999999999998888888888876543
No 290
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=67.40 E-value=1.6e+02 Score=30.43 Aligned_cols=39 Identities=21% Similarity=0.376 Sum_probs=20.9
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 016990 264 YWQEFNNFQF--QLIAHQEERDAISSKIEVSQAHLELLKRT 302 (379)
Q Consensus 264 ~w~e~n~~q~--qL~~~~eE~~sl~~q~~~~~~qLdkLrkT 302 (379)
.+++.-.+.+ +...+.+-...|..++..+...+..|.++
T Consensus 313 lcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~ 353 (384)
T PF03148_consen 313 LCRDPPQYGLIEEVKELRESIEALQEKLDEAEASLQKLERT 353 (384)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444433333 44555555556666666666666665543
No 291
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=67.11 E-value=2e+02 Score=31.60 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 175 RVLSDKLDKEVDDVTRDIEAYEAC 198 (379)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~f 198 (379)
..+-+.++.=++..++|..++..-
T Consensus 284 ~~I~e~ie~lYd~lE~EveA~~~V 307 (570)
T COG4477 284 GLIQEKIESLYDLLEREVEAKNVV 307 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666677777776533
No 292
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=67.05 E-value=87 Score=27.34 Aligned_cols=73 Identities=23% Similarity=0.378 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEV 291 (379)
Q Consensus 216 ~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~ 291 (379)
.+++..++.+-..+..++..+..+.......+...+. ..+.++..|=++...++....++..+..-|-.|++.
T Consensus 58 ~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~---sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 58 IKELQQLREELQELQQEINELKAEAESAKAELEESEA---SWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555666666666666666665555555544432 345666677778888888888888877777777764
No 293
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.92 E-value=58 Score=33.75 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=8.7
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 016990 126 HIPPPEGGTNGPMQPNNS 143 (379)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~ 143 (379)
+.|...++..++.++|..
T Consensus 185 ~~~~~~~d~~~~yp~n~~ 202 (365)
T KOG2391|consen 185 ALPYMTDDNAEPYPPNAS 202 (365)
T ss_pred cCcccCCCCCCcCCCCcc
Confidence 444444444455555544
No 294
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=66.89 E-value=1.2e+02 Score=29.05 Aligned_cols=16 Identities=19% Similarity=0.569 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHh
Q 016990 285 ISSKIEVSQAHLELLK 300 (379)
Q Consensus 285 l~~q~~~~~~qLdkLr 300 (379)
+++|++|...-.+.|+
T Consensus 187 v~AQl~Yh~q~~e~L~ 202 (215)
T cd07593 187 LDAELDYHQQSLDVLR 202 (215)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455665555444443
No 295
>PLN02678 seryl-tRNA synthetase
Probab=66.33 E-value=69 Score=34.06 Aligned_cols=72 Identities=13% Similarity=0.275 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIE 290 (379)
Q Consensus 215 l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~ 290 (379)
...++.++.++-+++..+++.+..++..+.++|..+....+.. +..-.+...+.-++..+++++..++.++.
T Consensus 31 ~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~----~~l~~~~~~Lk~ei~~le~~~~~~~~~l~ 102 (448)
T PLN02678 31 LVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDA----TELIAETKELKKEITEKEAEVQEAKAALD 102 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677788888899999999999999988887654322111 11222334444455555555555555444
No 296
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=66.11 E-value=1.7e+02 Score=30.42 Aligned_cols=113 Identities=16% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 016990 177 LSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEE----TEKQNAEVNAELKELEL 252 (379)
Q Consensus 177 Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~el~~Le~EE~~L~~eLee----lEkE~~~l~~el~~le~ 252 (379)
.+..|..++..+...+.....-+.--..+... -...+..-...+..|..+....... ++++.+.+..++..++.
T Consensus 286 ~i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~--~~~q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~ 363 (458)
T COG3206 286 TIQDLRQQYAQVRQQIADLSTELGAKHPQLVA--LEAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKG 363 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccChHHHh--HHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 253 KSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 295 (379)
Q Consensus 253 e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~q 295 (379)
+...+.+.+. .|+.+++++.....-...+..+|+.+..+
T Consensus 364 ~~~~~~~~~~----~l~~L~Re~~~~r~~ye~lL~r~qe~~~~ 402 (458)
T COG3206 364 RLSKLPKLQV----QLRELEREAEAARSLYETLLQRYQELSIQ 402 (458)
T ss_pred HHhhchHhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 297
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=65.97 E-value=1.1e+02 Score=31.04 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 016990 278 HQEERDAISSKIEVSQAHLELLKR 301 (379)
Q Consensus 278 ~~eE~~sl~~q~~~~~~qLdkLrk 301 (379)
.+.++..+.-.++-|+.-|+.|++
T Consensus 80 a~~~L~~a~P~L~~A~~al~~l~k 103 (344)
T PF12777_consen 80 AEEELAEAEPALEEAQEALKSLDK 103 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCS-H
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCH
Confidence 344444444445555544444433
No 298
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=65.82 E-value=2.4e+02 Score=31.93 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 016990 181 LDKEVDDVTRDIEAYEACLQRLEG 204 (379)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~~L~~ 204 (379)
+..++..+.++++.|....+.+.+
T Consensus 424 l~~~l~~~tk~reqlk~lV~~~~k 447 (716)
T KOG4593|consen 424 LAEELPQVTKEREQLKGLVQKVDK 447 (716)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666555544
No 299
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=65.72 E-value=70 Score=25.80 Aligned_cols=76 Identities=13% Similarity=0.253 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016990 224 EEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEER--YWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (379)
Q Consensus 224 ~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~--~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLr 300 (379)
-...++...+.++.+.-..+...|..+..+..++.+.+.- .+..-- +...|..+..+..++...+...+..+++|+
T Consensus 14 P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~~l~~lk~R~~~L~ 91 (92)
T PF14712_consen 14 PDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHERLQKLKKRADKLQ 91 (92)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344455555555555555555555555554444442221 122222 455566666666666667777777777765
No 300
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=65.67 E-value=61 Score=30.17 Aligned_cols=67 Identities=21% Similarity=0.300 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 016990 231 AAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLN 306 (379)
Q Consensus 231 ~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrkTNV~n 306 (379)
+.++-++.+++.+.++|.+++.....+.+.=- ..||+.|..|.+-+..++......+.++...++--
T Consensus 85 ~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vv---------sYqll~hr~e~ee~~~~l~~le~~~~~~e~~~~~~ 151 (175)
T PRK13182 85 VDFEQLEAQLNTITRRLDELERQLQQKADDVV---------SYQLLQHRREMEEMLERLQKLEARLKKLEPIYITP 151 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---------hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 44455556666666666666555444433221 23566777777777777777777788877666544
No 301
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=65.53 E-value=1.7e+02 Score=30.06 Aligned_cols=47 Identities=21% Similarity=0.351 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCceeeeecCCceeecccccCC
Q 016990 280 EERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGR 327 (379)
Q Consensus 280 eE~~sl~~q~~~~~~qLdkLrkTNV~nd~F~I~hdG~fGTINgfRLGr 327 (379)
+++..+++++..++.++..++..--++..-.=-+||....++ ++.|.
T Consensus 227 ~~~~~~~~~l~~~~~~l~~~~~~l~~~~~i~AP~dG~V~~~~-~~~G~ 273 (421)
T TIGR03794 227 KELETVEARIKEARYEIEELENKLNLNTRIVSQHSGRVIELN-YTPGQ 273 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEcCCCeEEEEee-CCCCC
Confidence 445566677777777777666554333333334566555554 25554
No 302
>PLN02372 violaxanthin de-epoxidase
Probab=65.50 E-value=90 Score=33.21 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 249 ELELKSKRFKELEERYWQEFNNFQF 273 (379)
Q Consensus 249 ~le~e~~~L~eeEe~~w~e~n~~q~ 273 (379)
.+.+..++|++.|..|.++.++-+.
T Consensus 407 ~~~~~~~~l~~~~~~f~~~lskee~ 431 (455)
T PLN02372 407 ALEEGLKELEQDEENFLKELSKEEK 431 (455)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 3444555556666666665544433
No 303
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=65.24 E-value=97 Score=27.57 Aligned_cols=38 Identities=26% Similarity=0.376 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhccccccCceeeeecCCceeecccccCCCCCCCC-Chhh
Q 016990 290 EVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPV-EWDE 337 (379)
Q Consensus 290 ~~~~~qLdkLrkTNV~nd~F~I~hdG~fGTINgfRLGrlp~~~V-~W~E 337 (379)
.|+..+.+.|- ..+ +.+-+||+| |||.+. |.+.+ .|+.
T Consensus 57 ~y~e~~r~e~~------k~K--s~~l~~G~v-~~R~~~-~~~~~~~~~~ 95 (149)
T PF07352_consen 57 AYAEANRDELT------KKK--SLKLPFGTV-GFRKST-PKVKVRDEEK 95 (149)
T ss_dssp HHHHCTHHHH-------------EE-SS-EE-------------T-HHH
T ss_pred HHHHHCHHhcc------cce--EEEcCCeeE-EEEecC-CcccCCCHHH
Confidence 36666666665 222 356789998 799885 34333 4444
No 304
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=65.20 E-value=1.4e+02 Score=28.90 Aligned_cols=65 Identities=18% Similarity=0.297 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016990 237 EKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (379)
Q Consensus 237 EkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrk 301 (379)
|....++..++.-+....+.|..-++.|....-.+.-++..+.+++.-...+-+++...+.+|.+
T Consensus 108 Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLek 172 (205)
T KOG1003|consen 108 ESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEK 172 (205)
T ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcc
Confidence 33344444444444444445555555555555555555555555555555555555555555544
No 305
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=65.19 E-value=1.4e+02 Score=29.20 Aligned_cols=37 Identities=11% Similarity=0.164 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 263 RYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (379)
Q Consensus 263 ~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkL 299 (379)
.|-......+.....++.+....+..|..+...|+.+
T Consensus 181 ~~~~~l~~~k~~v~~Le~~v~~aK~~Y~~ALrnLE~I 217 (239)
T PF05276_consen 181 KFNQQLEEQKEKVEELEAKVKQAKSRYSEALRNLEQI 217 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455555555555666666666654
No 306
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=65.01 E-value=81 Score=33.07 Aligned_cols=28 Identities=25% Similarity=0.504 Sum_probs=17.4
Q ss_pred ccchHHHHHHHHHhhcCCCC-cCCcchHH
Q 016990 145 FHSTITVLKRAFEIATSQTQ-VEQPLCLE 172 (379)
Q Consensus 145 lss~i~~l~~lFdIlSs~s~-IDhPLC~E 172 (379)
++.-+.+|.+=|.|+-.+.+ -..|.|.+
T Consensus 57 inDP~~ALqRDf~~l~Ek~D~EK~p~ct~ 85 (561)
T KOG1103|consen 57 INDPFAALQRDFAILGEKIDEEKIPQCTE 85 (561)
T ss_pred cCChHHHHHHHHHHHhccccccccceecc
Confidence 44556777888888865533 23566765
No 307
>PF13514 AAA_27: AAA domain
Probab=64.91 E-value=2.8e+02 Score=32.47 Aligned_cols=27 Identities=19% Similarity=0.420 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016990 178 SDKLDKEVDDVTRDIEAYEACLQRLEG 204 (379)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~ 204 (379)
+..+..+++..+++++.|..-+..|-.
T Consensus 745 ~~~~~~ri~~~~~~~~~f~~~~~~L~~ 771 (1111)
T PF13514_consen 745 IRELRRRIEQMEADLAAFEEQVAALAE 771 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888877776643
No 308
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.60 E-value=1.4e+02 Score=32.04 Aligned_cols=47 Identities=26% Similarity=0.338 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 212 EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (379)
Q Consensus 212 ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~ 258 (379)
..++.+++++-.+.+++|..-.--.|+|..++.+.+.+.+..+..|.
T Consensus 136 ~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~~aE~~i~El~ 182 (542)
T KOG0993|consen 136 QLDLENEMDKAKEDEEKLRELVTPMEKEINELKKKLAKAEQRIDELS 182 (542)
T ss_pred hhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45666777776666667766666778888777777766665544443
No 309
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=64.46 E-value=91 Score=26.64 Aligned_cols=83 Identities=19% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhc---------------------------------ccCCHHHHHHHHHH
Q 016990 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEAR---------------------------------DVLSEADFLKEKLK 221 (379)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~---------------------------------~~~~ee~l~~el~~ 221 (379)
...++.|.+++..+...+..|...++.|+.-.. ...-+.++.+...-
T Consensus 12 ~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~vE~~~~eA~~~ 91 (129)
T cd00584 12 QQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYVEKDLEEAIEF 91 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEEEEecHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (379)
Q Consensus 222 Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L 257 (379)
++...+.|.+.+++++++...+.+++..++....++
T Consensus 92 l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~ 127 (129)
T cd00584 92 LDKKIEELTKQIEKLQKELAKLKDQINTLEAELQEL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 310
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=64.42 E-value=73 Score=25.52 Aligned_cols=85 Identities=16% Similarity=0.313 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADF---LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (379)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l---~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~ 254 (379)
+.....++..+...+..|..-+.... . ..+...+ ..-+..|+.....+..++..++.+.+.....+.+...+.
T Consensus 14 ~~~~~~~l~~L~~~~~~~~~~~~~~~-~---~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~ 89 (123)
T PF02050_consen 14 LQEAEEQLEQLQQERQEYQEQLSESQ-Q---GVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRER 89 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT------S---GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc-C---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555533333222 1 1122222 223445677777778888888888888888887777777
Q ss_pred HHHHHHHHHHHH
Q 016990 255 KRFKELEERYWQ 266 (379)
Q Consensus 255 ~~L~eeEe~~w~ 266 (379)
+.++.+.++--.
T Consensus 90 k~~e~L~e~~~~ 101 (123)
T PF02050_consen 90 KKLEKLKERRRE 101 (123)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777766654333
No 311
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=64.42 E-value=65 Score=25.66 Aligned_cols=32 Identities=16% Similarity=0.153 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 221 KIEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (379)
Q Consensus 221 ~Le~EE~~L~~eLeelEkE~~~l~~el~~le~ 252 (379)
.|+.-...|....++|..|...+.+++..++.
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ 35 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWRE 35 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555444443
No 312
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.33 E-value=79 Score=25.88 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 236 TEKQNAEVNAELKELELKSKRFKELEERYWQEF 268 (379)
Q Consensus 236 lEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~ 268 (379)
|..|...+....+.|+.+..+++ +|..-|+++
T Consensus 37 l~~e~q~~q~~reaL~~eneqlk-~e~~~WQer 68 (79)
T COG3074 37 LSQEVQNAQHQREALERENEQLK-EEQNGWQER 68 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 33333344444455555555554 344566543
No 313
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=64.29 E-value=1.2e+02 Score=28.15 Aligned_cols=95 Identities=23% Similarity=0.380 Sum_probs=47.0
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh--------------cccC--CHHHH----HHHHHHHHH
Q 016990 165 VEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEA--------------RDVL--SEADF----LKEKLKIEE 224 (379)
Q Consensus 165 IDhPLC~ECtd~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~--------------~~~~--~ee~l----~~el~~Le~ 224 (379)
+.-|- .=.+..|..|+..+..+.........--++++.+. ...+ ..+++ ..++..++.
T Consensus 21 ~EDP~--~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~ 98 (221)
T PF04012_consen 21 AEDPE--KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEE 98 (221)
T ss_pred hcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 34465 55556666667666666555444433333332211 0000 12333 223334555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 225 EERKLEAAIEETEKQNAEVNAELKELELKSKRFKELE 261 (379)
Q Consensus 225 EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeE 261 (379)
+-..+.+.+..++.....+...+..++.+...+...-
T Consensus 99 ~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~ 135 (221)
T PF04012_consen 99 QAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKR 135 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666666666666666665555554433
No 314
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=64.16 E-value=27 Score=35.21 Aligned_cols=43 Identities=28% Similarity=0.373 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYW 265 (379)
Q Consensus 223 e~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w 265 (379)
..|-+.|.-|++.||+..++|..+..+++.|+..|++.=.++.
T Consensus 247 Rae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~ 289 (294)
T KOG4571|consen 247 RAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVY 289 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567888888888888888888888877776665544333
No 315
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=63.84 E-value=1.8e+02 Score=31.10 Aligned_cols=15 Identities=20% Similarity=0.350 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHhhcC
Q 016990 343 GQACLLLHTMCQYFR 357 (379)
Q Consensus 343 GQ~~LLL~tla~kl~ 357 (379)
|..+=|..+|+.++|
T Consensus 206 ~~k~~~~~tLaGs~g 220 (459)
T KOG0288|consen 206 GEKSELISTLAGSLG 220 (459)
T ss_pred cchhhhhhhhhccCC
Confidence 444556666666543
No 316
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=63.82 E-value=2e+02 Score=30.32 Aligned_cols=22 Identities=18% Similarity=0.014 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCC
Q 016990 338 INAAWGQACLLLHTMCQYFRPK 359 (379)
Q Consensus 338 INAAwGQ~~LLL~tla~kl~~~ 359 (379)
||--+--+.+||..++.-+++-
T Consensus 344 inllL~l~~vlLv~vSt~~~~~ 365 (395)
T PF10267_consen 344 INLLLTLLTVLLVFVSTVANCP 365 (395)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC
Confidence 4555555556666666655543
No 317
>PRK09343 prefoldin subunit beta; Provisional
Probab=63.75 E-value=99 Score=26.85 Aligned_cols=30 Identities=33% Similarity=0.462 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 222 IEEEERKLEAAIEETEKQNAEVNAELKELE 251 (379)
Q Consensus 222 Le~EE~~L~~eLeelEkE~~~l~~el~~le 251 (379)
+++..+-+..+|+.+|++...+...+.+++
T Consensus 76 l~~r~E~ie~~ik~lekq~~~l~~~l~e~q 105 (121)
T PRK09343 76 LKERKELLELRSRTLEKQEKKLREKLKELQ 105 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444443
No 318
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=63.74 E-value=76 Score=26.98 Aligned_cols=32 Identities=22% Similarity=0.419 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 268 FNNFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (379)
Q Consensus 268 ~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkL 299 (379)
++.++..+.+..-+.+.+.++++-...+++.|
T Consensus 67 v~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 67 VHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555444444443
No 319
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=63.66 E-value=2.6e+02 Score=31.65 Aligned_cols=51 Identities=20% Similarity=0.076 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 016990 252 LKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 302 (379)
Q Consensus 252 ~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrkT 302 (379)
.....|...-+.+-..+..++.+..+...+++...-+..+++..+++|++.
T Consensus 566 ~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~k 616 (698)
T KOG0978|consen 566 QSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRK 616 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445566677777777777777777777777778888777654
No 320
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.55 E-value=1e+02 Score=33.41 Aligned_cols=15 Identities=27% Similarity=0.536 Sum_probs=9.7
Q ss_pred cccCCCCCccceEEE
Q 016990 99 ASQSGKAMDESFVVI 113 (379)
Q Consensus 99 ~~~~~~~~~eSfV~l 113 (379)
+..+++.-.+.||.+
T Consensus 182 t~~p~~~~~~g~vtl 196 (508)
T KOG3091|consen 182 TRNPSRTDDEGFVTL 196 (508)
T ss_pred cCCCCccCCCCeeee
Confidence 455666666777775
No 321
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=63.14 E-value=73 Score=25.07 Aligned_cols=47 Identities=21% Similarity=0.294 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELE 261 (379)
Q Consensus 215 l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeE 261 (379)
+.+.+..++...+.+...+..+|+..+..+.++..+......+..--
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~ 50 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNT 50 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555566666666666666666666655554444433
No 322
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=62.90 E-value=66 Score=33.67 Aligned_cols=71 Identities=21% Similarity=0.366 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEV 291 (379)
Q Consensus 217 ~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~ 291 (379)
.++.++-++-+++..+++.|.+++.++.+++..+....+..+ ..-.+...+..++.+++++...++.++..
T Consensus 28 d~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~----~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 28 DELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAE----ALIAEVKELKEEIKALEAELDELEAELEE 98 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355567777888888888888888888888876443221111 12223334444444445555444444443
No 323
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=62.88 E-value=24 Score=36.30 Aligned_cols=11 Identities=36% Similarity=0.537 Sum_probs=4.2
Q ss_pred cccccCCCCCC
Q 016990 321 NNFRLGRLPKI 331 (379)
Q Consensus 321 NgfRLGrlp~~ 331 (379)
||+|+=.+|..
T Consensus 191 nNiRIiGiPEg 201 (370)
T PF02994_consen 191 NNIRIIGIPEG 201 (370)
T ss_dssp TEEEEES----
T ss_pred CceeEEecCCC
Confidence 56676446664
No 324
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=62.88 E-value=49 Score=27.64 Aligned_cols=26 Identities=27% Similarity=0.587 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016990 178 SDKLDKEVDDVTRDIEAYEACLQRLE 203 (379)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (379)
++.+..++..++..++.|....+.|+
T Consensus 5 l~~l~~~~~~l~~~~~e~~~~~~~l~ 30 (120)
T PF02996_consen 5 LENLQQQIEQLEEQIEEYEEAKETLE 30 (120)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999987766654
No 325
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=62.81 E-value=3.2e+02 Score=32.45 Aligned_cols=57 Identities=12% Similarity=0.128 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 233 IEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKI 289 (379)
Q Consensus 233 LeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~ 289 (379)
++.+.+.+..+..-+.+++.....+...+...-.+|.....+-.+..+++..+..|+
T Consensus 418 ver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql 474 (1141)
T KOG0018|consen 418 VERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQL 474 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444344444444444444444444444443
No 326
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=62.80 E-value=1.1e+02 Score=33.95 Aligned_cols=40 Identities=23% Similarity=0.364 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (379)
Q Consensus 218 el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L 257 (379)
+..+|+++-++|..+|..+.++.+....++...+.+.++.
T Consensus 80 ~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~ 119 (632)
T PF14817_consen 80 RRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQM 119 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777777777777777776766666555443
No 327
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=62.51 E-value=2.3e+02 Score=30.57 Aligned_cols=15 Identities=20% Similarity=0.350 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHh
Q 016990 189 TRDIEAYEACLQRLE 203 (379)
Q Consensus 189 ~~E~d~Y~~fL~~L~ 203 (379)
+++.+.++..++.|+
T Consensus 188 ~~eld~L~~ql~ELe 202 (563)
T TIGR00634 188 AQRLDFLQFQLEELE 202 (563)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333444443
No 328
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=62.50 E-value=90 Score=25.92 Aligned_cols=62 Identities=27% Similarity=0.349 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 187 DVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (379)
Q Consensus 187 ~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~l 250 (379)
.+.++++.|...+.-++++..-.. ..+ ..++..+-.+++.+..+|..+++++..+-..+...
T Consensus 9 ~L~~~~~~~~~L~~ll~~e~~~l~-~~d-~~~l~~~~~~k~~l~~~l~~le~~r~~~~~~~~~~ 70 (143)
T PF05130_consen 9 LLEEQIELLQELLELLEEEREALI-SGD-IDELEELVEEKQELLEELRELEKQRQQLLAKLGAE 70 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-TTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 345566777777776665432111 111 22445566777788888888888888776665433
No 329
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=62.40 E-value=69 Score=30.63 Aligned_cols=33 Identities=18% Similarity=0.320 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016990 268 FNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (379)
Q Consensus 268 ~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLr 300 (379)
.....-++...+++.+.|+.-+..=+..|+.|+
T Consensus 162 l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 162 LKSVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345556666777777777777766666777765
No 330
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=62.39 E-value=82 Score=30.63 Aligned_cols=7 Identities=29% Similarity=0.871 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 016990 191 DIEAYEA 197 (379)
Q Consensus 191 E~d~Y~~ 197 (379)
|...|..
T Consensus 29 El~~~~~ 35 (256)
T PF14932_consen 29 ELQAFEE 35 (256)
T ss_pred HHHHHHH
Confidence 3444433
No 331
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=62.34 E-value=1.7e+02 Score=29.11 Aligned_cols=34 Identities=18% Similarity=0.302 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (379)
Q Consensus 222 Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~ 255 (379)
|.+=+++...++..|+++...+++.|....++..
T Consensus 72 Lqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~ 105 (258)
T PF15397_consen 72 LQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELN 105 (258)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445556666666666666666666655543
No 332
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=61.96 E-value=3e+02 Score=32.14 Aligned_cols=25 Identities=12% Similarity=0.137 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 176 VLSDKLDKEVDDVTRDIEAYEACLQ 200 (379)
Q Consensus 176 ~Lle~Ld~qle~~~~E~d~Y~~fL~ 200 (379)
.+.+.+..+......+.+....-+.
T Consensus 184 ~~~~~l~er~k~~~~~l~~l~~~l~ 208 (1047)
T PRK10246 184 QISAMVFEQHKSARTELEKLQAQAS 208 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5666666666666665555555553
No 333
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=61.91 E-value=1.7e+02 Score=32.29 Aligned_cols=111 Identities=14% Similarity=0.170 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (379)
Q Consensus 174 td~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e 253 (379)
++.+.+.|.+++..++... ....+.. +. ....+.....+..+++++++......+.+|..+...
T Consensus 3 ad~~~~~L~~eL~~le~~n--i~~l~~s-~~-------------~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~d 66 (701)
T PF09763_consen 3 ADAFEERLSKELSALEAAN--IHSLLES-EK-------------QVNSLMEYLDEALAECDELESWLSLYDVELNSVRDD 66 (701)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHh-hH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888774332 2222221 00 111222333444555555555555555555555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 016990 254 SKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNV 304 (379)
Q Consensus 254 ~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrkTNV 304 (379)
.+.++.+....-.+ +. ....+.++++.|..++.....+|+.|+..++
T Consensus 67 i~~IE~qn~~Lqvq-~~---N~k~L~~eL~~Ll~~l~i~~~~l~~L~~~~l 113 (701)
T PF09763_consen 67 IEYIESQNNGLQVQ-SA---NQKLLLNELENLLDTLSIPEEHLEALRNASL 113 (701)
T ss_pred HHHHHhhcCchhhH-HH---HHHHHHHHHHHHHHhcCCCHHHHHHHhcCCC
Confidence 44443333221111 11 2233457777777888888888988887555
No 334
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=61.86 E-value=1.9e+02 Score=29.39 Aligned_cols=27 Identities=11% Similarity=0.307 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016990 274 QLIAHQEERDAISSKIEVSQAHLELLK 300 (379)
Q Consensus 274 qL~~~~eE~~sl~~q~~~~~~qLdkLr 300 (379)
+|...+-....++.|+..+..++++|.
T Consensus 89 dlq~Ke~qv~~lEgQl~s~Kkqie~Le 115 (307)
T PF10481_consen 89 DLQVKESQVNFLEGQLNSCKKQIEKLE 115 (307)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444455566666666655554
No 335
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=61.19 E-value=1.6e+02 Score=28.47 Aligned_cols=38 Identities=11% Similarity=0.314 Sum_probs=18.6
Q ss_pred HHHHHHHhhcCC-----CCcCCcchHHHHHHHHHHHHHHHHHHHH
Q 016990 151 VLKRAFEIATSQ-----TQVEQPLCLECMRVLSDKLDKEVDDVTR 190 (379)
Q Consensus 151 ~l~~lFdIlSs~-----s~IDhPLC~ECtd~Lle~Ld~qle~~~~ 190 (379)
.++++++++.++ ..+.-|- .=.+..|..|+.++..+..
T Consensus 3 i~~r~~~~~~a~~~~~~dk~EDp~--~~l~Q~ird~~~~l~~ar~ 45 (225)
T COG1842 3 IFSRLKDLVKANINELLDKAEDPE--KMLEQAIRDMESELAKARQ 45 (225)
T ss_pred hHHHHHHHHHHHHHHHHHhhcCHH--HHHHHHHHHHHHHHHHHHH
Confidence 345566665442 2234444 4444455555555555443
No 336
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.13 E-value=2.7e+02 Score=30.99 Aligned_cols=29 Identities=14% Similarity=0.202 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 270 NFQFQLIAHQEERDAISSKIEVSQAHLEL 298 (379)
Q Consensus 270 ~~q~qL~~~~eE~~sl~~q~~~~~~qLdk 298 (379)
+|+.++...-++.+++.+-++-+....+|
T Consensus 659 dFk~Elq~~~~~~~~L~~~iET~~~~~~K 687 (741)
T KOG4460|consen 659 DFKKELQLIPDQLRHLGNAIETVTMKKDK 687 (741)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555566665555555544444
No 337
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=61.05 E-value=2.8e+02 Score=31.18 Aligned_cols=23 Identities=22% Similarity=0.186 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016990 226 ERKLEAAIEETEKQNAEVNAELK 248 (379)
Q Consensus 226 E~~L~~eLeelEkE~~~l~~el~ 248 (379)
..+-.+++.++..+.+.+..+|.
T Consensus 119 k~eR~~ef~el~~qie~l~~~l~ 141 (660)
T KOG4302|consen 119 KDERRAEFKELYHQIEKLCEELG 141 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 33334444455555554444443
No 338
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=60.85 E-value=1.6e+02 Score=28.12 Aligned_cols=90 Identities=16% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
Q 016990 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL--KSKRFKELEERYWQEFNNFQFQLIAHQ--------EERDAIS 286 (379)
Q Consensus 217 ~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~--e~~~L~eeEe~~w~e~n~~q~qL~~~~--------eE~~sl~ 286 (379)
+++..|..+..+|.+.+..+.++..-+++||+.|.. -..++.++-..+=++...+.-.|-.+. ++...+.
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~ 158 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVY 158 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhccccccCc
Q 016990 287 SKIEVSQAHLELLKRTNVLNDA 308 (379)
Q Consensus 287 ~q~~~~~~qLdkLrkTNV~nd~ 308 (379)
..|+-.-.+..+-++ +||+.
T Consensus 159 ~~y~~~~~~wrk~kr--mf~ei 178 (201)
T KOG4603|consen 159 REYQKYCKEWRKRKR--MFREI 178 (201)
T ss_pred HHHHHHHHHHHHHHH--HHHHH
No 339
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=60.79 E-value=1.2e+02 Score=26.93 Aligned_cols=8 Identities=38% Similarity=0.513 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 016990 230 EAAIEETE 237 (379)
Q Consensus 230 ~~eLeelE 237 (379)
.++|.++.
T Consensus 58 ~~~L~~~~ 65 (126)
T PF09403_consen 58 EAELAELK 65 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 340
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=60.75 E-value=1.9e+02 Score=29.15 Aligned_cols=7 Identities=14% Similarity=0.235 Sum_probs=3.1
Q ss_pred ChhhHHH
Q 016990 334 EWDEINA 340 (379)
Q Consensus 334 ~W~EINA 340 (379)
--.+.|+
T Consensus 246 Risalni 252 (333)
T KOG1853|consen 246 RISALNI 252 (333)
T ss_pred hHHHHHH
Confidence 3444444
No 341
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=60.35 E-value=69 Score=35.05 Aligned_cols=87 Identities=18% Similarity=0.265 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-HHHHHHHHHhccccccCceeeeecCCceeecccccCCCCCCCCChh
Q 016990 261 EERYWQEFNNFQFQLIAHQEERDAISS---KIE-VSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWD 336 (379)
Q Consensus 261 Ee~~w~e~n~~q~qL~~~~eE~~sl~~---q~~-~~~~qLdkLrkTNV~nd~F~I~hdG~fGTINgfRLGrlp~~~V~W~ 336 (379)
-+-++..|+.+++.|..|..+...+.+ |+. .+.-.-..+||.|.+|-.|++ +.||..=---....+=.
T Consensus 70 ~q~s~d~y~kYKLKLeR~~~Kk~ki~~sk~~ik~lt~lK~~L~~r~n~lN~p~~v--------l~n~~vfFnKkrEaek~ 141 (574)
T PF07462_consen 70 IQVSLDHYGKYKLKLERLLKKKNKISNSKEQIKKLTILKNKLERRQNLLNNPTSV--------LKNFTVFFNKKREAEKK 141 (574)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHH--------HHHHHHHHhhhhHHHHH
Confidence 344677888888888888877754432 222 111122235789999988876 33443221122356778
Q ss_pred hHHHHHHHHHHHHHHHHhh
Q 016990 337 EINAAWGQACLLLHTMCQY 355 (379)
Q Consensus 337 EINAAwGQ~~LLL~tla~k 355 (379)
||--++--+=.||-.--.+
T Consensus 142 eveNtlkNt~iLlkyYKa~ 160 (574)
T PF07462_consen 142 EVENTLKNTEILLKYYKAR 160 (574)
T ss_pred HHHHHhhhHHHHHHHHHHH
Confidence 8888888886666554443
No 342
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.13 E-value=2.5e+02 Score=30.35 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016990 230 EAAIEETEKQNAEVNAELKE 249 (379)
Q Consensus 230 ~~eLeelEkE~~~l~~el~~ 249 (379)
..+|+++|.++..+.+++..
T Consensus 344 ~~~IqeleqdL~a~~eei~~ 363 (521)
T KOG1937|consen 344 IRRIQELEQDLEAVDEEIES 363 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45666666666666666653
No 343
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=59.84 E-value=3.7e+02 Score=32.11 Aligned_cols=42 Identities=12% Similarity=0.141 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCce
Q 016990 268 FNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAF 309 (379)
Q Consensus 268 ~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrkTNV~nd~F 309 (379)
.|.+..+.....+..+.+...+...+.|++-|+-+.++...+
T Consensus 281 ~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~~S~~Lg~~L 322 (1109)
T PRK10929 281 MDLIASQQRQAASQTLQVRQALNTLREQSQWLGVSNALGEAL 322 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 334444444444444555555555567777777777776665
No 344
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.77 E-value=1e+02 Score=30.48 Aligned_cols=41 Identities=29% Similarity=0.274 Sum_probs=24.7
Q ss_pred eeecCCceeecccccCCCC-------CCCCChhhHHHHHHHHHHHHHHH
Q 016990 311 IWHDGEFGTINNFRLGRLP-------KIPVEWDEINAAWGQACLLLHTM 352 (379)
Q Consensus 311 I~hdG~fGTINgfRLGrlp-------~~~V~W~EINAAwGQ~~LLL~tl 352 (379)
|.+.|+|-||||-|+ ..| +.++--.-.|++=|-.=+|+...
T Consensus 169 Ir~v~g~~~vdg~~~-~~P~TIkAIGd~~~m~~~~~~~ggl~d~~~~~~ 216 (247)
T COG3879 169 IRCVGGTLLVDGRRL-SAPYTIKAIGDPPAMLAALNAPGGLQDLLLERR 216 (247)
T ss_pred EEecCCeEEECCeec-CCCeEEEEecChHHHHHHhhccchHHHHHhhhh
Confidence 556689999999999 544 23444555555555444433333
No 345
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=59.72 E-value=1e+02 Score=25.61 Aligned_cols=17 Identities=24% Similarity=0.143 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016990 272 QFQLIAHQEERDAISSK 288 (379)
Q Consensus 272 q~qL~~~~eE~~sl~~q 288 (379)
+-+....++.+.++..+
T Consensus 59 k~E~~~WqerLr~LLGk 75 (79)
T PRK15422 59 KEQQNGWQERLQALLGR 75 (79)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33334444444444333
No 346
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=59.59 E-value=32 Score=29.30 Aligned_cols=31 Identities=13% Similarity=0.316 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 221 KIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (379)
Q Consensus 221 ~Le~EE~~L~~eLeelEkE~~~l~~el~~le 251 (379)
+++++...+.+++++++.+.+.|.+++..++
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555555555555555555555555444
No 347
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=59.54 E-value=2.7e+02 Score=30.45 Aligned_cols=70 Identities=14% Similarity=0.246 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (379)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~l 250 (379)
+.+-..+..+++++..+.+.+..-...+..+ .+.+.+.+...+++.+.+..+|+++......++.|+...
T Consensus 412 ~LIk~~Y~~RI~eLt~qlQ~adSKa~~f~~E------c~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TT 481 (518)
T PF10212_consen 412 QLIKSYYMSRIEELTSQLQHADSKAVHFYAE------CRALQKRLESAEKEKESLEEELKEANQNISRLQDELETT 481 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777776665444433321 223344444444555555556666555555555554433
No 348
>PF15294 Leu_zip: Leucine zipper
Probab=59.52 E-value=2e+02 Score=28.97 Aligned_cols=29 Identities=31% Similarity=0.417 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 215 FLKEKLKIEEEERKLEAAIEETEKQNAEV 243 (379)
Q Consensus 215 l~~el~~Le~EE~~L~~eLeelEkE~~~l 243 (379)
+.+|..+|.+|-.+|...|..+|++.-..
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~ 158 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSA 158 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778778778887777776544433
No 349
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.35 E-value=94 Score=34.61 Aligned_cols=75 Identities=15% Similarity=0.173 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhc-c-cC--CHHHHHH---HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEAR-D-VL--SEADFLK---EKLKIEEE-ERKLEAAIEETEKQNAEVNAELKE 249 (379)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~~-~-~~--~ee~l~~---el~~Le~E-E~~L~~eLeelEkE~~~l~~el~~ 249 (379)
+..|.++|+++.+-|-...--|+++..... . .+ ......+ +-.++-++ -.+|.+|++.+++-.++++.....
T Consensus 461 ~~sL~~~LeqAsK~CRIL~~RL~K~~R~q~R~~~~~~~d~~kIK~LE~e~R~S~~Ls~~L~~ElE~~~~~~~~~e~~~ev 540 (852)
T KOG4787|consen 461 VISLATKLEQANKQCRILNERLNKLHRKQVRDGEIQYSDELKIKILELEKRLSEKLAIDLVSELEGKIPTIDEIEQCCEV 540 (852)
T ss_pred HHHHHHHHHHHhchhHHHHHHHhHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHhHHHHHHHH
Confidence 344667777777777776666666653221 1 00 1111111 11112122 225677777777766666666555
Q ss_pred HHH
Q 016990 250 LEL 252 (379)
Q Consensus 250 le~ 252 (379)
|..
T Consensus 541 L~~ 543 (852)
T KOG4787|consen 541 LAA 543 (852)
T ss_pred HHH
Confidence 543
No 350
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=59.30 E-value=62 Score=35.35 Aligned_cols=21 Identities=33% Similarity=0.401 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016990 232 AIEETEKQNAEVNAELKELEL 252 (379)
Q Consensus 232 eLeelEkE~~~l~~el~~le~ 252 (379)
+++.+|++.+++++++.+++.
T Consensus 564 ~~~~~e~~i~~le~~~~~l~~ 584 (638)
T PRK10636 564 EIARLEKEMEKLNAQLAQAEE 584 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 351
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=59.12 E-value=1.2e+02 Score=27.25 Aligned_cols=74 Identities=27% Similarity=0.371 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhcc--cCC--H-HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 179 DKLDKEVDDVTRDIEAYEACLQRLEGEARD--VLS--E-ADF-----LKEKLKIEEEERKLEAAIEETEKQNAEVNAELK 248 (379)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~--~~~--e-e~l-----~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~ 248 (379)
..++..++....+++........+.--..+ .+. - +-| .+-...||+-.+.+.++|+.+|.+.+.+..+|.
T Consensus 33 ~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~~les~~e~I~~~m~ 112 (131)
T KOG1760|consen 33 DDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIEELESELESISARMD 112 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777666655421111 000 0 001 122234677777888888888888888888877
Q ss_pred HHHH
Q 016990 249 ELEL 252 (379)
Q Consensus 249 ~le~ 252 (379)
+|+.
T Consensus 113 ~LK~ 116 (131)
T KOG1760|consen 113 ELKK 116 (131)
T ss_pred HHHH
Confidence 7765
No 352
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=59.03 E-value=1.1e+02 Score=25.68 Aligned_cols=77 Identities=23% Similarity=0.365 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHhchhc--------------ccCCHH-HHHHHHH-HHHHHHHHHHHHHHHHH
Q 016990 176 VLSDKLDKEVDDVTRDIEAYEAC--LQRLEGEAR--------------DVLSEA-DFLKEKL-KIEEEERKLEAAIEETE 237 (379)
Q Consensus 176 ~Lle~Ld~qle~~~~E~d~Y~~f--L~~L~~~~~--------------~~~~ee-~l~~el~-~Le~EE~~L~~eLeelE 237 (379)
.|-+...++++..-+|++....+ |++|-.+.. +.++.+ .+..-+. .++.+...|...|..++
T Consensus 14 ~l~~~~~~Ef~~I~~Er~v~~kLneLd~Li~eA~~r~~~~~~~~~~~~~~l~P~~~i~a~l~~~~~~~~~~L~~~l~~l~ 93 (109)
T PF03980_consen 14 FLEENCKKEFEEILEERDVVEKLNELDKLIEEAKERKNSGEREKPVWRHSLTPEEDIRAHLAPYKKKEREQLNARLQELE 93 (109)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhccccCCCCCCCCCChHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34455667788888888877643 344422210 112333 3333222 24667778888899999
Q ss_pred HHHHHHHHHHHHHHH
Q 016990 238 KQNAEVNAELKELEL 252 (379)
Q Consensus 238 kE~~~l~~el~~le~ 252 (379)
++...+.+++.+++.
T Consensus 94 ~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 94 EENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999888888877654
No 353
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=58.99 E-value=2e+02 Score=28.68 Aligned_cols=37 Identities=27% Similarity=0.403 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (379)
Q Consensus 217 ~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e 253 (379)
.|..+++...++|.++|+=+..+..+|+.-+..+|.+
T Consensus 120 ~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k 156 (254)
T KOG2196|consen 120 NEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLETK 156 (254)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555544444444444444443
No 354
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=58.96 E-value=2.2e+02 Score=29.16 Aligned_cols=26 Identities=4% Similarity=0.032 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 273 FQLIAHQEERDAISSKIEVSQAHLEL 298 (379)
Q Consensus 273 ~qL~~~~eE~~sl~~q~~~~~~qLdk 298 (379)
.++..++.+.+..+..|......++.
T Consensus 342 ~~~~~L~r~~~~~~~~y~~ll~r~~e 367 (444)
T TIGR03017 342 DEMSVLQRDVENAQRAYDAAMQRYTQ 367 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555554444433
No 355
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=58.56 E-value=2.1e+02 Score=29.01 Aligned_cols=64 Identities=14% Similarity=0.238 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 229 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVS 292 (379)
Q Consensus 229 L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~ 292 (379)
+-.++.+|-.+-.+.-.+|..+-.+...+...=..|-.++-.+.....++.++...+.+.|.-.
T Consensus 177 ~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~ 240 (294)
T COG1340 177 IHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELREL 240 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333433333444444444444444444444444444333
No 356
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=58.51 E-value=2e+02 Score=28.62 Aligned_cols=29 Identities=17% Similarity=0.236 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 016990 275 LIAHQEERDAISSKIEVSQAHLELLKRTN 303 (379)
Q Consensus 275 L~~~~eE~~sl~~q~~~~~~qLdkLrkTN 303 (379)
|..+.+.++.|..+.-....++++++|.+
T Consensus 221 lnah~~sLqwl~d~st~~e~k~d~i~K~~ 249 (254)
T KOG2196|consen 221 LNAHMDSLQWLDDNSTQLEKKLDKIKKLK 249 (254)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 44555666666666666666777777654
No 357
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=58.32 E-value=1.1e+02 Score=30.55 Aligned_cols=17 Identities=12% Similarity=0.243 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016990 183 KEVDDVTRDIEAYEACL 199 (379)
Q Consensus 183 ~qle~~~~E~d~Y~~fL 199 (379)
.+|+-+.-|-+.-.+-|
T Consensus 59 ~RL~HLS~EEK~~RrKL 75 (292)
T KOG4005|consen 59 RRLDHLSWEEKVQRRKL 75 (292)
T ss_pred HhhcccCHHHHHHHHHH
Confidence 33444433433433333
No 358
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=58.24 E-value=1e+02 Score=32.11 Aligned_cols=36 Identities=22% Similarity=0.467 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (379)
Q Consensus 216 ~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le 251 (379)
..++..+-++-+++..+++.|..++..+.+++..+.
T Consensus 29 vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~ 64 (418)
T TIGR00414 29 LEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAK 64 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666777788888888888888888888887643
No 359
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=58.03 E-value=63 Score=30.83 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHh
Q 016990 284 AISSKIEVSQAHLELLK 300 (379)
Q Consensus 284 sl~~q~~~~~~qLdkLr 300 (379)
..++++..++.+|+.++
T Consensus 113 ~~~~~l~~~~~~l~~~~ 129 (322)
T TIGR01730 113 AAQADLEAAKASLASAQ 129 (322)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444444
No 360
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=57.86 E-value=37 Score=32.31 Aligned_cols=45 Identities=20% Similarity=0.396 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 229 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLI 276 (379)
Q Consensus 229 L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~ 276 (379)
+......++++...++.+|..++. +++..|++||..|..++.-+.
T Consensus 191 i~~~~~~l~~~~~~~~~~i~~~~~---rl~~~~~~l~~qf~~me~~i~ 235 (239)
T PF07195_consen 191 ITSRIDSLNSQIKSLDKQIEDLEE---RLESKEERLRKQFSAMESLIS 235 (239)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666654 567888899999988876544
No 361
>PF13166 AAA_13: AAA domain
Probab=57.83 E-value=2.8e+02 Score=30.18 Aligned_cols=26 Identities=15% Similarity=0.061 Sum_probs=16.9
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHHHhhc
Q 016990 326 GRLPKIPVEWDEINAAWGQACLLLHTMCQYF 356 (379)
Q Consensus 326 Grlp~~~V~W~EINAAwGQ~~LLL~tla~kl 356 (379)
|..|..-.+.-|=| ++-|+++||.-.
T Consensus 494 ~~~~~~~LSEGEk~-----~iAf~yFla~l~ 519 (712)
T PF13166_consen 494 GSKPAKILSEGEKR-----AIAFAYFLAELK 519 (712)
T ss_pred CCcccCccCHHHHH-----HHHHHHHHHHHh
Confidence 44566777888875 455666666643
No 362
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=57.76 E-value=45 Score=36.43 Aligned_cols=33 Identities=42% Similarity=0.563 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (379)
Q Consensus 223 e~EE~~L~~eLeelEkE~~~l~~el~~le~e~~ 255 (379)
+.+-.++.+++.++.++++++++++++++.+.+
T Consensus 92 ~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~ 124 (646)
T PRK05771 92 EEELEKIEKEIKELEEEISELENEIKELEQEIE 124 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555554433
No 363
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=57.74 E-value=7.5 Score=43.18 Aligned_cols=24 Identities=29% Similarity=0.142 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHhccccccCceee
Q 016990 288 KIEVSQAHLELLKRTNVLNDAFPI 311 (379)
Q Consensus 288 q~~~~~~qLdkLrkTNV~nd~F~I 311 (379)
+++.-+..|.+.-+.|+|-..+.|
T Consensus 154 ~~~~f~~~l~r~~~~N~fi~~~~I 177 (759)
T PF01496_consen 154 KIESFERILWRATRGNIFIRFSEI 177 (759)
T ss_dssp HHHHHHHHHHHHHTT-----S---
T ss_pred hHHHHHHHHHHhccCCeEEEEEee
Confidence 445556678888888888766644
No 364
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.66 E-value=2.5e+02 Score=31.08 Aligned_cols=19 Identities=26% Similarity=0.385 Sum_probs=8.3
Q ss_pred HHHHHhhcCCCCcCCcchH
Q 016990 153 KRAFEIATSQTQVEQPLCL 171 (379)
Q Consensus 153 ~~lFdIlSs~s~IDhPLC~ 171 (379)
.+.|.|-|+...---..|.
T Consensus 214 nq~Le~~ssS~~g~~~~~~ 232 (654)
T KOG4809|consen 214 NQPLEINSSSAKGLGYTCL 232 (654)
T ss_pred cchhhhhhhcccCCCchHH
Confidence 3444555444443333443
No 365
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.60 E-value=2.1e+02 Score=33.13 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=14.5
Q ss_pred ccchHHHHH--HHHHhhcCCCCcCCc
Q 016990 145 FHSTITVLK--RAFEIATSQTQVEQP 168 (379)
Q Consensus 145 lss~i~~l~--~lFdIlSs~s~IDhP 168 (379)
|-+++..+. .+|.++|-+.+...|
T Consensus 584 f~srL~~lsr~e~ysra~~kqq~~l~ 609 (970)
T KOG0946|consen 584 FISRLQRLSRHELYSRASMKQQPQLK 609 (970)
T ss_pred HHHHHHHhhHhHHHHHHhhccCccCC
Confidence 445555443 468888877766444
No 366
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=57.45 E-value=2.2e+02 Score=28.88 Aligned_cols=19 Identities=42% Similarity=0.539 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016990 224 EEERKLEAAIEETEKQNAE 242 (379)
Q Consensus 224 ~EE~~L~~eLeelEkE~~~ 242 (379)
.+|.++.+.|.+|++++..
T Consensus 131 e~E~~lvq~I~~L~k~le~ 149 (294)
T COG1340 131 EEERELVQKIKELRKELED 149 (294)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555543
No 367
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=57.27 E-value=1.8e+02 Score=27.85 Aligned_cols=38 Identities=18% Similarity=0.129 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCceeeeecCC
Q 016990 278 HQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGE 316 (379)
Q Consensus 278 ~~eE~~sl~~q~~~~~~qLdkLrkTNV~nd~F~I~hdG~ 316 (379)
.++++..+..+++..+.++..|.+--- -.+.+|....+
T Consensus 167 ie~~L~~v~~eIe~~~~~~~~l~~~v~-~sti~i~l~~~ 204 (262)
T PF14257_consen 167 IERELSRVRSEIEQLEGQLKYLDDRVD-YSTITISLYEP 204 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-eEEEEEEEEec
Confidence 333444444444444444444433221 23555555544
No 368
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=57.26 E-value=71 Score=34.89 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 216 LKEKLKIEEEERKLEAAIEETEKQNA 241 (379)
Q Consensus 216 ~~el~~Le~EE~~L~~eLeelEkE~~ 241 (379)
.+++.++|++..+|++++.+++.+..
T Consensus 562 ~~~~~~~e~~i~~le~~~~~l~~~l~ 587 (638)
T PRK10636 562 RKEIARLEKEMEKLNAQLAQAEEKLG 587 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33455566667777777776666664
No 369
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=57.20 E-value=63 Score=36.08 Aligned_cols=60 Identities=15% Similarity=0.264 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 229 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQA 294 (379)
Q Consensus 229 L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~ 294 (379)
|+.+|+.|++|+++ |+. ......++..+..-++.+.++.++..++||+.-+.+....+..
T Consensus 2 LRdkL~~Lq~ek~~---E~~---~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~r~~s~ 61 (654)
T PF09798_consen 2 LRDKLELLQQEKQK---ERQ---ALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNELRSLSS 61 (654)
T ss_pred hHHHHHHHHHHHHH---HHH---HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556666655532 211 2223334444455567788888888889999888777655443
No 370
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=56.53 E-value=40 Score=25.96 Aligned_cols=29 Identities=34% Similarity=0.578 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 222 IEEEERKLEAAIEETEKQNAEVNAELKEL 250 (379)
Q Consensus 222 Le~EE~~L~~eLeelEkE~~~l~~el~~l 250 (379)
+..+..+|.++++++.++.+++.+++..+
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455555555555555554444444
No 371
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=56.27 E-value=53 Score=25.43 Aligned_cols=34 Identities=24% Similarity=0.489 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (379)
Q Consensus 221 ~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~ 254 (379)
+||.+..++...+..+++|.+++..++++++.-.
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666665555433
No 372
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=56.14 E-value=1.4e+02 Score=29.09 Aligned_cols=31 Identities=19% Similarity=0.324 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 223 EEEERKLEAAIEETEKQNAEVNAELKELELK 253 (379)
Q Consensus 223 e~EE~~L~~eLeelEkE~~~l~~el~~le~e 253 (379)
++|...+..++..+|.+..+|...+.+++.+
T Consensus 184 e~ek~~~~~~~k~le~~k~~Le~~ia~~k~K 214 (259)
T KOG4001|consen 184 ENEKTRATTEWKVLEDKKKELELKIAQLKKK 214 (259)
T ss_pred hhhhhHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4445555666666666666666555555543
No 373
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=56.11 E-value=1.6e+02 Score=34.16 Aligned_cols=97 Identities=20% Similarity=0.274 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 016990 225 EERKLEAAIEETEKQNAEVNAELKELELKSKRFKELE--ERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 302 (379)
Q Consensus 225 EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeE--e~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrkT 302 (379)
|...|+..++.+..+..++.+++..+..+...++.-- ...-+.+..++.++.+.-.+--|+..-......+|+.+++.
T Consensus 775 E~~~lEe~~d~~~ee~~el~a~v~~~~~qi~~lE~g~~~a~lr~~~~slk~~l~e~ar~Wasl~~~~~vl~e~l~~~ke~ 854 (984)
T COG4717 775 ELALLEEAIDALDEEVEELHAQVAALSRQIAQLEGGGTVAELRQRRESLKEDLEEKARKWASLRLAVQVLEEALRLFKER 854 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444455555554555555544444443332100 01223344444455555555555555555555666655543
Q ss_pred ---ccc---cCceeeeecCCceeec
Q 016990 303 ---NVL---NDAFPIWHDGEFGTIN 321 (379)
Q Consensus 303 ---NV~---nd~F~I~hdG~fGTIN 321 (379)
-|+ .++|.==.||.|.+|+
T Consensus 855 rlP~vi~~A~~~F~hlT~G~Yt~Iy 879 (984)
T COG4717 855 RLPAVIQEASEFFMHLTDGRYTGIY 879 (984)
T ss_pred hchHHHHHHHHHHhhccCCceeeee
Confidence 223 3456433789999886
No 374
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=55.84 E-value=1.2e+02 Score=25.27 Aligned_cols=6 Identities=0% Similarity=0.135 Sum_probs=2.2
Q ss_pred HHHHHH
Q 016990 185 VDDVTR 190 (379)
Q Consensus 185 le~~~~ 190 (379)
+..++.
T Consensus 5 L~~~~~ 10 (96)
T PF08647_consen 5 LVSMEQ 10 (96)
T ss_pred HHHHHH
Confidence 333333
No 375
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.80 E-value=2.1e+02 Score=33.07 Aligned_cols=68 Identities=15% Similarity=0.269 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 230 EAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 297 (379)
Q Consensus 230 ~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLd 297 (379)
.+.++++......+...|+++..+.+.+.+.+.+.--+.-.++-+...+..+..+++.|+.....||.
T Consensus 649 ~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 649 EKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344555555555555566665556665555555555555555555555555555555555555554
No 376
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=55.71 E-value=2.5e+02 Score=29.00 Aligned_cols=72 Identities=14% Similarity=0.227 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 226 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 297 (379)
Q Consensus 226 E~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLd 297 (379)
-..+...|+.+++-..-++.+++.+-.+.......=.+.-..|+...-...+...++..|..+++..+.+++
T Consensus 247 ~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~eme 318 (359)
T PF10498_consen 247 QQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEME 318 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666667777776666655444443344445555555555555555556666665555555
No 377
>PRK10869 recombination and repair protein; Provisional
Probab=55.52 E-value=3e+02 Score=29.81 Aligned_cols=11 Identities=9% Similarity=-0.061 Sum_probs=4.9
Q ss_pred HHHHHHHHHhc
Q 016990 291 VSQAHLELLKR 301 (379)
Q Consensus 291 ~~~~qLdkLrk 301 (379)
....+|+.|..
T Consensus 328 ~l~~eL~~L~~ 338 (553)
T PRK10869 328 QLLEEQQQLDD 338 (553)
T ss_pred HHHHHHHHhhC
Confidence 33344444444
No 378
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=55.43 E-value=2.4e+02 Score=28.65 Aligned_cols=28 Identities=21% Similarity=0.430 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 174 MRVLSDKLDKEVDDVTRDIEAYEACLQR 201 (379)
Q Consensus 174 td~Lle~Ld~qle~~~~E~d~Y~~fL~~ 201 (379)
....++.++++++.++.+++.|...+..
T Consensus 86 q~~~i~~l~~~i~~l~~~i~~y~~~~~~ 113 (301)
T PF06120_consen 86 QKRAIEDLQKKIDSLKDQIKNYQQQLAE 113 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445667777777777777777765553
No 379
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=55.41 E-value=1.4e+02 Score=29.94 Aligned_cols=26 Identities=8% Similarity=0.174 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 274 QLIAHQEERDAISSKIEVSQAHLELL 299 (379)
Q Consensus 274 qL~~~~eE~~sl~~q~~~~~~qLdkL 299 (379)
++...+.++...+++++.++.+|+.+
T Consensus 159 ~~~~~~~~l~~~~~~l~~~~~~l~~~ 184 (370)
T PRK11578 159 QIGTIDAQIKRNQASLDTAKTNLDYT 184 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444555556667777777776543
No 380
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=55.21 E-value=1.3e+02 Score=25.53 Aligned_cols=41 Identities=22% Similarity=0.374 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 260 (379)
Q Consensus 220 ~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~ee 260 (379)
.++..+-..+..+|..++++.-++...-.++-.+...+.+.
T Consensus 6 ~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~ 46 (106)
T PF05837_consen 6 LNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEK 46 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666666666655555555555544433
No 381
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=55.09 E-value=1.4e+02 Score=25.91 Aligned_cols=21 Identities=19% Similarity=0.528 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 016990 183 KEVDDVTRDIEAYEACLQRLE 203 (379)
Q Consensus 183 ~qle~~~~E~d~Y~~fL~~L~ 203 (379)
.+++......+.|...+..|.
T Consensus 6 ~~l~~l~~~~~~l~~~~~~l~ 26 (140)
T PRK03947 6 QELEELAAQLQALQAQIEALQ 26 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444544444443
No 382
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=54.99 E-value=92 Score=31.11 Aligned_cols=17 Identities=12% Similarity=0.366 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHhc
Q 016990 188 VTRDIEAYEACLQRLEG 204 (379)
Q Consensus 188 ~~~E~d~Y~~fL~~L~~ 204 (379)
+++|+|.-.+.++-..+
T Consensus 78 vEkEvdvRkr~~r~Fnk 94 (314)
T COG5220 78 VEKEVDVRKRLLRAFNK 94 (314)
T ss_pred hhhhhhHHHHHHHHhcc
Confidence 46666666666555543
No 383
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=54.91 E-value=1.5e+02 Score=31.57 Aligned_cols=92 Identities=21% Similarity=0.340 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 295 (379)
Q Consensus 216 ~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~q 295 (379)
..++.+|..+-+++..++++|..++.++.++|.....+... .......+.+.+.-++.+...+.+.++++++..
T Consensus 28 ~~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~---~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~--- 101 (429)
T COG0172 28 VDKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGED---DAEELIAEVKELKEKLKELEAALDELEAELDTL--- 101 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch---hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH---
Confidence 44566788888899999999999999998888743332211 122344555556555555555555554444322
Q ss_pred HHHHhccccccCceeeeecC
Q 016990 296 LELLKRTNVLNDAFPIWHDG 315 (379)
Q Consensus 296 LdkLrkTNV~nd~F~I~hdG 315 (379)
.|.--|+-.+.=.++-|+
T Consensus 102 --ll~ipNi~~~~VPvg~de 119 (429)
T COG0172 102 --LLTIPNIPHESVPVGKDE 119 (429)
T ss_pred --HHhCCCCCccccCcCCCc
Confidence 234456666666555443
No 384
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=54.49 E-value=55 Score=29.58 Aligned_cols=28 Identities=25% Similarity=0.523 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 222 IEEEERKLEAAIEETEKQNAEVNAELKE 249 (379)
Q Consensus 222 Le~EE~~L~~eLeelEkE~~~l~~el~~ 249 (379)
||.+...|.++++.|..|.+++..|+..
T Consensus 79 LE~~k~~L~qqv~~L~~e~s~~~~E~da 106 (135)
T KOG4196|consen 79 LEKEKAELQQQVEKLKEENSRLRRELDA 106 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433333
No 385
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=54.44 E-value=2.3e+02 Score=29.16 Aligned_cols=24 Identities=8% Similarity=0.037 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 263 RYWQEFNNFQFQLIAHQEERDAIS 286 (379)
Q Consensus 263 ~~w~e~n~~q~qL~~~~eE~~sl~ 286 (379)
+|-.-+|+-+..+.++++.+..+.
T Consensus 184 KF~~vLNeKK~KIR~lq~~L~~~~ 207 (342)
T PF06632_consen 184 KFVLVLNEKKAKIRELQRLLASAK 207 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhh
Confidence 466666666666666666555543
No 386
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=54.40 E-value=50 Score=24.50 Aligned_cols=30 Identities=30% Similarity=0.556 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 223 EEEERKLEAAIEETEKQNAEVNAELKELEL 252 (379)
Q Consensus 223 e~EE~~L~~eLeelEkE~~~l~~el~~le~ 252 (379)
...+..|..++..|+.+...|..++..|+.
T Consensus 24 k~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 24 KQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444556677777777777777777666654
No 387
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=54.15 E-value=4.8e+02 Score=31.71 Aligned_cols=14 Identities=7% Similarity=-0.199 Sum_probs=6.2
Q ss_pred ccccccCceeeeec
Q 016990 301 RTNVLNDAFPIWHD 314 (379)
Q Consensus 301 kTNV~nd~F~I~hd 314 (379)
..|=++..||+...
T Consensus 942 ~ine~~s~l~~~~~ 955 (1294)
T KOG0962|consen 942 DINEKVSLLHQIYK 955 (1294)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444445554433
No 388
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=54.10 E-value=4.8e+02 Score=31.74 Aligned_cols=11 Identities=27% Similarity=0.374 Sum_probs=6.1
Q ss_pred HHHHHHHHHhc
Q 016990 291 VSQAHLELLKR 301 (379)
Q Consensus 291 ~~~~qLdkLrk 301 (379)
.++.+|++|+.
T Consensus 1704 ~a~~kl~~l~d 1714 (1758)
T KOG0994|consen 1704 QANEKLDRLKD 1714 (1758)
T ss_pred HHHHHHHHHHH
Confidence 45556666654
No 389
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=54.06 E-value=38 Score=28.31 Aligned_cols=60 Identities=23% Similarity=0.345 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchhc-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 182 DKEVDDVTRDIEAYEACLQRLEGEAR-DVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNA 245 (379)
Q Consensus 182 d~qle~~~~E~d~Y~~fL~~L~~~~~-~~~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~ 245 (379)
-+|++.+++....|..-|+.++..-. ..+++++ ...+|+|...+...+...|+++..+..
T Consensus 4 ~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~----R~~lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 4 AKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEA----RRSLEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHH----HHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 46777788888777777776664321 1223222 233555555666666666665554444
No 390
>PRK10869 recombination and repair protein; Provisional
Probab=54.02 E-value=3.2e+02 Score=29.63 Aligned_cols=77 Identities=16% Similarity=0.139 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCce
Q 016990 233 IEETEKQNAEVNAELKELEL---KSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAF 309 (379)
Q Consensus 233 LeelEkE~~~l~~el~~le~---e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrkTNV~nd~F 309 (379)
++++-.-.+++.+++..++. ....|+++.++.+.++...-.+|. ..|...-.++ ...=...|+..+.=+..|
T Consensus 319 ~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS---~~R~~aA~~l--~~~v~~~L~~L~m~~a~f 393 (553)
T PRK10869 319 PEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLH---QSRQRYAKEL--AQLITESMHELSMPHGKF 393 (553)
T ss_pred HHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH--HHHHHHHHHHcCCCCcEE
Confidence 44444444445555544443 233333333344444433333322 2232222222 222345677888889999
Q ss_pred eeeec
Q 016990 310 PIWHD 314 (379)
Q Consensus 310 ~I~hd 314 (379)
+|...
T Consensus 394 ~v~~~ 398 (553)
T PRK10869 394 TIDVK 398 (553)
T ss_pred EEEEe
Confidence 98863
No 391
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=53.74 E-value=1.7e+02 Score=26.35 Aligned_cols=39 Identities=21% Similarity=0.415 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 226 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQE 267 (379)
Q Consensus 226 E~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e 267 (379)
...|..-|+.||+++..|..+++..+- +|+++-+.|.+-
T Consensus 53 ~~~l~~llkqLEkeK~~Le~qlk~~e~---rLeQEsKAyhk~ 91 (129)
T PF15372_consen 53 VESLNQLLKQLEKEKRSLENQLKDYEW---RLEQESKAYHKA 91 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 355777788889999999988888774 566666655553
No 392
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=53.63 E-value=68 Score=30.16 Aligned_cols=14 Identities=7% Similarity=0.173 Sum_probs=8.5
Q ss_pred CCcCCcchHHHHHH
Q 016990 163 TQVEQPLCLECMRV 176 (379)
Q Consensus 163 s~IDhPLC~ECtd~ 176 (379)
.-=|||+|=|++|-
T Consensus 97 GICDy~~CCDGSDE 110 (176)
T PF12999_consen 97 GICDYDICCDGSDE 110 (176)
T ss_pred CcCcccccCCCCCC
Confidence 33567777666654
No 393
>PRK10698 phage shock protein PspA; Provisional
Probab=53.55 E-value=2.1e+02 Score=27.38 Aligned_cols=48 Identities=15% Similarity=0.185 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 248 KELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 295 (379)
Q Consensus 248 ~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~q 295 (379)
..++.+.......-.++-..+..++..+.+...++..|.+++..+..+
T Consensus 102 ~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~ 149 (222)
T PRK10698 102 ATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSS 149 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444455556666666777777777777766654
No 394
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=53.55 E-value=4e+02 Score=31.77 Aligned_cols=30 Identities=23% Similarity=0.332 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 221 KIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (379)
Q Consensus 221 ~Le~EE~~L~~eLeelEkE~~~l~~el~~l 250 (379)
+++..-..+..+++.++++.+.+...+.+.
T Consensus 811 ~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~ 840 (1141)
T KOG0018|consen 811 RWERSVEDLEKEIEGLKKDEEAAEKIIAEI 840 (1141)
T ss_pred HHHHHHHHHHHhHHhhHHHHHHHHHHHhhH
Confidence 344444455555555555555555444444
No 395
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=53.53 E-value=2.6e+02 Score=28.45 Aligned_cols=87 Identities=21% Similarity=0.186 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 210 LSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKI 289 (379)
Q Consensus 210 ~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~ 289 (379)
++.|.++.=++.-|--.+.|...|++-+..+.+-+.||.+|+.+..+..+.=-+===.+=+-|+-|.+...|.++|+.-+
T Consensus 54 P~PEQYLTPLQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvi 133 (305)
T PF15290_consen 54 PNPEQYLTPLQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVI 133 (305)
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 016990 290 EVSQAHL 296 (379)
Q Consensus 290 ~~~~~qL 296 (379)
+...+.|
T Consensus 134 eTmrssL 140 (305)
T PF15290_consen 134 ETMRSSL 140 (305)
T ss_pred HHHHhhh
No 396
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=53.52 E-value=2.1e+02 Score=27.39 Aligned_cols=58 Identities=16% Similarity=0.215 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQE 280 (379)
Q Consensus 223 e~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~e 280 (379)
+...++|...|.-...+..++.........|...|+.+-..+-...+.++.+...++.
T Consensus 125 ~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~ 182 (192)
T PF11180_consen 125 EARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQR 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667777777777777777777777777777777666555555555555544443
No 397
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=53.44 E-value=2.7e+02 Score=28.63 Aligned_cols=32 Identities=19% Similarity=0.347 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh
Q 016990 172 ECMRVLSDKLDKEVDDVTRDIEAYE--ACLQRLE 203 (379)
Q Consensus 172 ECtd~Lle~Ld~qle~~~~E~d~Y~--~fL~~L~ 203 (379)
.|...--+.|+.+|+.+.++.+.+- .|+..|+
T Consensus 56 ~C~kvHd~~lk~~Ye~~~k~~~~~~E~d~~~~l~ 89 (319)
T KOG0796|consen 56 PCPKVHDEALKADYERASKERDYGYEWDALEILE 89 (319)
T ss_pred cccchhhHHHHHHHhhchHhhhhhhhHHHHHHHH
Confidence 4777888999999999999888742 4444444
No 398
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.26 E-value=2.5e+02 Score=28.14 Aligned_cols=28 Identities=7% Similarity=0.312 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 016990 178 SDKLDKEVDDVTRDIEAYEACLQRLEGE 205 (379)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~~ 205 (379)
+..=|.++..++++....+.-++.|..+
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~q 60 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQ 60 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666666666543
No 399
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=53.19 E-value=2e+02 Score=27.20 Aligned_cols=19 Identities=16% Similarity=0.478 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 016990 185 VDDVTRDIEAYEACLQRLE 203 (379)
Q Consensus 185 le~~~~E~d~Y~~fL~~L~ 203 (379)
++...+=++.|.+-+..|+
T Consensus 107 lq~mr~~ln~FR~qm~dlE 125 (179)
T PF14723_consen 107 LQQMRRSLNSFREQMMDLE 125 (179)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555554
No 400
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=53.13 E-value=2.2e+02 Score=30.80 Aligned_cols=43 Identities=14% Similarity=0.064 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCcee
Q 016990 268 FNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFP 310 (379)
Q Consensus 268 ~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrkTNV~nd~F~ 310 (379)
-...+-|+..+.++..+..+........++.++..|=|-.+|-
T Consensus 350 ~s~~~~q~~~~h~~ka~~~~~~~~l~~~~ec~~~e~e~~~~~~ 392 (554)
T KOG4677|consen 350 ESAGQTQIFRKHPRKASILNMPLVLTLFYECFYHETEAEGTFS 392 (554)
T ss_pred HHHhHHHHHHhhhHhhhhhhchHHHHHHHHHHHHHHHHhhhhh
Confidence 3445666777777777777777777777777777666666553
No 401
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=52.88 E-value=1.9e+02 Score=29.80 Aligned_cols=21 Identities=14% Similarity=0.329 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016990 178 SDKLDKEVDDVTRDIEAYEAC 198 (379)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~f 198 (379)
++.++.+=.++.+.+..|+.-
T Consensus 2 Vdd~QN~N~EL~kQiEIcqEE 22 (351)
T PF07058_consen 2 VDDVQNQNQELMKQIEICQEE 22 (351)
T ss_pred chhhhhhcHHHHHHHHHHHHH
Confidence 344555555555566666543
No 402
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=52.83 E-value=2.1e+02 Score=27.08 Aligned_cols=50 Identities=12% Similarity=0.185 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 246 ELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 295 (379)
Q Consensus 246 el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~q 295 (379)
.+..++.+...+...-.++-..+..++.++.++...+..+.+++..++.+
T Consensus 100 ~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~ 149 (219)
T TIGR02977 100 LAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSR 149 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444555566666666666666666666655554
No 403
>PLN02320 seryl-tRNA synthetase
Probab=52.79 E-value=1.2e+02 Score=32.84 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKE 249 (379)
Q Consensus 218 el~~Le~EE~~L~~eLeelEkE~~~l~~el~~ 249 (379)
++..+-++-+++..+++++..++..+.+++..
T Consensus 94 ~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~ 125 (502)
T PLN02320 94 LVLELYENMLALQKEVERLRAERNAVANKMKG 125 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455566666777777777777777777654
No 404
>PRK15335 type III secretion system protein SpaM; Provisional
Probab=52.77 E-value=1.4e+02 Score=27.06 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016990 233 IEETEKQNAEVNAELKELELK 253 (379)
Q Consensus 233 LeelEkE~~~l~~el~~le~e 253 (379)
|-.+-...+.+..++.+|..+
T Consensus 68 lyallRrqaivRRQ~~~L~Lq 88 (147)
T PRK15335 68 IYTLLRKQSIVRRQIKDLELQ 88 (147)
T ss_pred HHHHHHHHHHHHHHHHhccch
Confidence 334444444444444444433
No 405
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=52.70 E-value=4e+02 Score=30.34 Aligned_cols=35 Identities=26% Similarity=0.266 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 265 WQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (379)
Q Consensus 265 w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkL 299 (379)
|.+.-.+......+++++++|.+..+..+..+..|
T Consensus 241 e~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSL 275 (739)
T PF07111_consen 241 EPEREELLETVQHLQEDRDALQATAELLQVRVQSL 275 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666667777888888887777776655554
No 406
>PRK09343 prefoldin subunit beta; Provisional
Probab=52.59 E-value=1.6e+02 Score=25.62 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016990 277 AHQEERDAISSKIEVSQAHLEL 298 (379)
Q Consensus 277 ~~~eE~~sl~~q~~~~~~qLdk 298 (379)
.++.+...+..++.-.+.+|..
T Consensus 89 ~lekq~~~l~~~l~e~q~~l~~ 110 (121)
T PRK09343 89 TLEKQEKKLREKLKELQAKINE 110 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443
No 407
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=52.47 E-value=4.1e+02 Score=30.40 Aligned_cols=27 Identities=19% Similarity=0.123 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 258 KELEERYWQEFNNFQFQLIAHQEERDA 284 (379)
Q Consensus 258 ~eeEe~~w~e~n~~q~qL~~~~eE~~s 284 (379)
...-...+..+.+....+.+...++..
T Consensus 395 ~~~~~~~~~~~~~~~~~~~e~~~~~~~ 421 (908)
T COG0419 395 KEELAELSAALEEIQEELEELEKELEE 421 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334455455554444444443333
No 408
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=52.41 E-value=2.3e+02 Score=27.60 Aligned_cols=20 Identities=25% Similarity=0.272 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016990 278 HQEERDAISSKIEVSQAHLE 297 (379)
Q Consensus 278 ~~eE~~sl~~q~~~~~~qLd 297 (379)
.+.+..+++++++.++.+|+
T Consensus 184 ~~~~~~~~~~~l~~a~~~l~ 203 (327)
T TIGR02971 184 AQAEVKSALEAVQQAEALLE 203 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34455566666666666554
No 409
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=52.24 E-value=1.6e+02 Score=25.64 Aligned_cols=55 Identities=13% Similarity=0.136 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQF 273 (379)
Q Consensus 219 l~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~ 273 (379)
+..|..........+..++.+.+.....+.+...+.+.++.+-++...+|...+.
T Consensus 73 i~~L~~~I~~q~~~v~~~~~~ve~~r~~~~~a~~~~k~lEkL~ek~~~~~~~~e~ 127 (147)
T PRK05689 73 LQQLEKAITQQRQQLTQWTQKVDNARKYWQEKKQRLEALETLQERYQTEARLAEN 127 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666777777888888887788888888888888888877777765543
No 410
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=52.22 E-value=1.3e+02 Score=32.83 Aligned_cols=32 Identities=19% Similarity=0.367 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016990 172 ECMRVLSDKLDKEVDDVTRDIEAYEACLQRLE 203 (379)
Q Consensus 172 ECtd~Lle~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (379)
-|+..|-+.=..|+..+.+..+.|..-.+++.
T Consensus 17 r~~~~l~~g~e~ef~rl~k~fed~~ek~~r~~ 48 (604)
T KOG3564|consen 17 RDIEILGEGNEDEFIRLRKDFEDFEEKWKRTD 48 (604)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHHHHHhhhh
Confidence 45666655555666666666665555545443
No 411
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=51.68 E-value=2.3e+02 Score=27.24 Aligned_cols=32 Identities=13% Similarity=0.116 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 264 YWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 295 (379)
Q Consensus 264 ~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~q 295 (379)
+=.+.-.++..|...+-...|++.+++.-...
T Consensus 159 ~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kE 190 (207)
T PF05010_consen 159 HQAELLALQASLKKEEMKVQSLEESLEQKTKE 190 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555555555555555555444433
No 412
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=51.68 E-value=1.5e+02 Score=26.40 Aligned_cols=62 Identities=16% Similarity=0.283 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 235 ETEKQNAEVNAELKELELKSKRFKELEE-RYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 298 (379)
Q Consensus 235 elEkE~~~l~~el~~le~e~~~L~eeEe-~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdk 298 (379)
.++++++++.+.-...+.....+...++ +|++ +.|+--+..+.+-+..|+..+.--+..++.
T Consensus 56 ~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk--~eYk~llk~y~~~~~~L~k~I~~~e~iI~~ 118 (126)
T PF09403_consen 56 AAEAELAELKELYAEIEEKIEKLKQDSKVRWYK--DEYKELLKKYKDLLNKLDKEIAEQEQIIDN 118 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444 2222 334433344444444444444444444433
No 413
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=51.10 E-value=5 Score=44.28 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016990 181 LDKEVDDVTRDIEAYEACLQRL 202 (379)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~~L 202 (379)
++-+...++.|+..|..+++..
T Consensus 310 lq~e~~~Le~el~sW~sl~~~~ 331 (722)
T PF05557_consen 310 LQLENEKLEDELNSWESLLQDI 331 (722)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 4445666677777777776653
No 414
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=50.95 E-value=2.4e+02 Score=27.23 Aligned_cols=27 Identities=15% Similarity=0.275 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 262 ERYWQEFNNFQFQLIAHQEERDAISSK 288 (379)
Q Consensus 262 e~~w~e~n~~q~qL~~~~eE~~sl~~q 288 (379)
+..|...+.|..+|.++++-++...++
T Consensus 181 ~~i~~~L~~~~~kL~Dl~~~l~eA~~~ 207 (264)
T PF06008_consen 181 EAIRDDLNDYNAKLQDLRDLLNEAQNK 207 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777777776666655554333
No 415
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=50.86 E-value=1.1e+02 Score=31.51 Aligned_cols=15 Identities=20% Similarity=0.383 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHh
Q 016990 189 TRDIEAYEACLQRLE 203 (379)
Q Consensus 189 ~~E~d~Y~~fL~~L~ 203 (379)
.+..+.|+.+++.+.
T Consensus 214 ~r~~~Yf~~l~~~f~ 228 (406)
T PF02388_consen 214 IRSLEYFENLYDAFG 228 (406)
T ss_dssp ---HHHHHHHHHHCC
T ss_pred ccCHHHHHHHHHhcC
Confidence 456677888888773
No 416
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=50.34 E-value=2.2e+02 Score=27.81 Aligned_cols=20 Identities=25% Similarity=0.192 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016990 271 FQFQLIAHQEERDAISSKIE 290 (379)
Q Consensus 271 ~q~qL~~~~eE~~sl~~q~~ 290 (379)
.+.++...+.+++...++++
T Consensus 194 ~~~~l~~l~~~~~~~~~~l~ 213 (301)
T PF14362_consen 194 AQAELDTLQAQIDAAIAALD 213 (301)
T ss_pred HHHHHHHHHHhHHHHHHHHH
Confidence 33444444444444333333
No 417
>smart00338 BRLZ basic region leucin zipper.
Probab=50.33 E-value=70 Score=24.36 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 228 KLEAAIEETEKQNAEVNAELKELELKSK 255 (379)
Q Consensus 228 ~L~~eLeelEkE~~~l~~el~~le~e~~ 255 (379)
.|+.++..|+.+...|..++..++.+..
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~l~~e~~ 57 (65)
T smart00338 30 ELERKVEQLEAENERLKKEIERLRRELE 57 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 418
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.23 E-value=59 Score=35.10 Aligned_cols=24 Identities=13% Similarity=0.216 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 175 RVLSDKLDKEVDDVTRDIEAYEACLQRL 202 (379)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L 202 (379)
.-|.++++-|.+++ +.|...++.+
T Consensus 337 ~dL~~R~K~Q~q~~----~~~r~ri~~i 360 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEV----KQHRIRINAI 360 (508)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 34555555555554 4454444444
No 419
>PLN02678 seryl-tRNA synthetase
Probab=49.99 E-value=1.3e+02 Score=32.05 Aligned_cols=72 Identities=19% Similarity=0.282 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARD-VLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (379)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~-~~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le 251 (379)
|.+++ ++.+...+..+.+.-..-.+.+.++... .... ++..++.++-+.|.++|..+|.+..++.+++.++-
T Consensus 33 d~il~-ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~----~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~ 105 (448)
T PLN02678 33 DEVIA-LDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAK----EDATELIAETKELKKEITEKEAEVQEAKAALDAKL 105 (448)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33433 5555555555555554444444332110 0000 01122334444555566666666666665655544
No 420
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=49.93 E-value=60 Score=27.90 Aligned_cols=29 Identities=28% Similarity=0.436 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 223 EEEERKLEAAIEETEKQNAEVNAELKELE 251 (379)
Q Consensus 223 e~EE~~L~~eLeelEkE~~~l~~el~~le 251 (379)
+++.+.+.++++.+++...+..++++.++
T Consensus 86 ~~~~~~~~~~~~~l~~~~~~~~~~~k~lk 114 (118)
T PF13815_consen 86 EERLQELQQEIEKLKQKLKKQKEEIKKLK 114 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444433
No 421
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=49.90 E-value=1.9e+02 Score=25.69 Aligned_cols=28 Identities=18% Similarity=0.406 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 016990 178 SDKLDKEVDDVTRDIEAYEACLQRLEGE 205 (379)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~~ 205 (379)
++..-..|..+++++..|..-.++|+.+
T Consensus 7 mee~~~kyq~LQk~l~k~~~~rqkle~q 34 (120)
T KOG3478|consen 7 MEEEANKYQNLQKELEKYVESRQKLETQ 34 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455567788899999999888888754
No 422
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=49.71 E-value=1.5e+02 Score=24.55 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016990 181 LDKEVDDVTRDIEAYEACLQ 200 (379)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~ 200 (379)
++.+...+..+.+.-..--+
T Consensus 34 ld~~~r~l~~~~e~lr~~rN 53 (108)
T PF02403_consen 34 LDQERRELQQELEELRAERN 53 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44444444444444443333
No 423
>PF02090 SPAM: Salmonella surface presentation of antigen gene type M protein; InterPro: IPR002954 The Salmonella typhimurium Surface Presentation of Antigens M gene (SpaM) is one of 12 that form a cluster responsible for invasion properties []. The gene product is required for entry by the bacterium into epithelial cells, and is thus considered to be a virulence factor []. Other Spa genes in the cluster are related to invasion (Inv) genes in similar Salmonella and Shigella species [], and flagella biosynthesis genes in Helicobacter pylori []. A homologue of this protein has been found recently in Salmonella enterica []. The protein, named InvI, is required by the organism to gain access to mammalian epithelial cells, and cellular mutants (InvI-) failed to successfully infect these cells. It has also been found that the inv-spa loci of this particular species encode for a type III protein secretion system, essential in the bacterium's host cell invasion process [].
Probab=49.69 E-value=2.1e+02 Score=26.28 Aligned_cols=41 Identities=12% Similarity=0.249 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 016990 233 IEETEKQNAEVNAELKELELKS-------KRFKELEERYWQEFNNFQF 273 (379)
Q Consensus 233 LeelEkE~~~l~~el~~le~e~-------~~L~eeEe~~w~e~n~~q~ 273 (379)
|-.+-...+.+..+|.++..+. ..++++-..+|+..+-+.+
T Consensus 68 L~allRkqAVvRrqi~eL~lq~~~i~ekR~~l~ke~~~~~~~r~~wlr 115 (147)
T PF02090_consen 68 LYALLRKQAVVRRQIQELNLQEQQIQEKRRQLEKEKQEQQEQRKHWLR 115 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555444444 3444444455555444433
No 424
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=49.53 E-value=4.5e+02 Score=30.21 Aligned_cols=37 Identities=14% Similarity=0.386 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (379)
Q Consensus 222 Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~ 258 (379)
|++|++.+.+.++++.++++++...++.|..+.++|.
T Consensus 221 L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 221 LEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5555556666666666666666666665555554444
No 425
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=49.37 E-value=1.9e+02 Score=29.45 Aligned_cols=11 Identities=9% Similarity=0.120 Sum_probs=4.8
Q ss_pred HHHHHHHHHHh
Q 016990 290 EVSQAHLELLK 300 (379)
Q Consensus 290 ~~~~~qLdkLr 300 (379)
.|...||+-+-
T Consensus 192 ~yL~~qldd~~ 202 (338)
T KOG3647|consen 192 DYLKSQLDDRT 202 (338)
T ss_pred HHHHHHHHHHh
Confidence 34444444443
No 426
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=49.37 E-value=1.6e+02 Score=24.83 Aligned_cols=93 Identities=19% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVS 292 (379)
Q Consensus 213 e~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~ 292 (379)
+++......+..++..|...-..|+......+.=+.+.+.+..+-...-++=-+.......++..+..++..+...+...
T Consensus 21 ~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~ 100 (126)
T PF13863_consen 21 EEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKL 100 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhccccc
Q 016990 293 QAHLELLKRTNVL 305 (379)
Q Consensus 293 ~~qLdkLrkTNV~ 305 (379)
...+..++...-|
T Consensus 101 e~~l~~~~~Y~~f 113 (126)
T PF13863_consen 101 EEKLEEYKKYEEF 113 (126)
T ss_pred HHHHHHHHHHHHH
No 427
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=49.18 E-value=2.7e+02 Score=27.38 Aligned_cols=92 Identities=14% Similarity=0.145 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHH
Q 016990 210 LSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQF----------QLIAHQ 279 (379)
Q Consensus 210 ~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~----------qL~~~~ 279 (379)
++..++..++...+.+...+..++..++.+.. ..+++.++.+....+.+-+...++|...+. ++.+.+
T Consensus 74 ld~~~~~~~l~~~~a~l~~~~~~l~~~~~~~~--~~~i~~~~~~l~~ak~~l~~a~~~~~r~~~L~~~g~vs~~~~~~~~ 151 (331)
T PRK03598 74 LDAAPYENALMQAKANVSVAQAQLDLMLAGYR--DEEIAQARAAVKQAQAAYDYAQNFYNRQQGLWKSRTISANDLENAR 151 (331)
T ss_pred EChHHHHHHHHHHHHHHHHHHHHHHHHHccCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Q 016990 280 EERDAISSKIEVSQAHLELLKRTN 303 (379)
Q Consensus 280 eE~~sl~~q~~~~~~qLdkLrkTN 303 (379)
.+.....+++..++..+..++...
T Consensus 152 ~~~~~a~~~~~~a~~~~~~~~~~~ 175 (331)
T PRK03598 152 SSRDQAQATLKSAQDKLSQYREGN 175 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccC
No 428
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=49.02 E-value=1.6e+02 Score=24.54 Aligned_cols=65 Identities=15% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 016990 235 ETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTN 303 (379)
Q Consensus 235 elEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrkTN 303 (379)
.++.-...|+..|..|+.-..+.-+-+... +.++-++..+...+..|..+++.+.....+|+.+|
T Consensus 5 ~le~al~rL~~aid~LE~~v~~r~~~~~~~----~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~ 69 (89)
T PF13747_consen 5 SLEAALTRLEAAIDRLEKAVDRRLERDRKR----DELEEEIQRLDADRSRLAQELDQAEARANRLEEAN 69 (89)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHH
No 429
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=49.02 E-value=2e+02 Score=25.70 Aligned_cols=36 Identities=8% Similarity=0.185 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016990 265 WQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (379)
Q Consensus 265 w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLr 300 (379)
=.+.+..+..+..+..+.+++.....-....|+.|.
T Consensus 88 ~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 88 KDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666666666666666666655555555554
No 430
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=48.86 E-value=2e+02 Score=25.75 Aligned_cols=14 Identities=7% Similarity=0.088 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q 016990 286 SSKIEVSQAHLELL 299 (379)
Q Consensus 286 ~~q~~~~~~qLdkL 299 (379)
..++.+.+..++-+
T Consensus 199 ~~qi~~~~~~~~~W 212 (218)
T cd07596 199 RLQVQYAEKIAEAW 212 (218)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555443
No 431
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=48.81 E-value=1.5e+02 Score=24.16 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 016990 180 KLDKEVDDVTRDIEAYEACLQRLE 203 (379)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (379)
.|...+..+...++.+..++..++
T Consensus 4 ~L~~~l~~l~~~~~~~~~~~~~l~ 27 (127)
T smart00502 4 ALEELLTKLRKKAAELEDALKQLI 27 (127)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344555555555555555555554
No 432
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=48.67 E-value=1.4e+02 Score=31.28 Aligned_cols=71 Identities=25% Similarity=0.328 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDV-LSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (379)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~-~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~l 250 (379)
|.+++ |+++...+..+.+.-+.-.+.+.++.... ...+ +..++.++-+++.++|+++|++..++++++.++
T Consensus 28 d~i~~-ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~----~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (425)
T PRK05431 28 DELLE-LDEERRELQTELEELQAERNALSKEIGQAKRKGE----DAEALIAEVKELKEEIKALEAELDELEAELEEL 99 (425)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444 66666666555555555444443321100 0000 112233444455555555555555555554443
No 433
>PRK12765 flagellar capping protein; Provisional
Probab=48.53 E-value=92 Score=34.19 Aligned_cols=56 Identities=5% Similarity=0.066 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 233 IEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEV 291 (379)
Q Consensus 233 LeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~ 291 (379)
-+-+.++.+.|+++++.++ .+++..+++|++.|+.+..-+..+......|..++..
T Consensus 534 ~~~l~~~~~~l~~~~~~~~---~rl~~~~~r~~~qf~alD~~i~~l~~t~s~l~~~~~~ 589 (595)
T PRK12765 534 DESLTNEIKSLTTSKESTQ---ELIDTKYETMANKWLQYDSIIAKLEQQFSTLKNMINA 589 (595)
T ss_pred hhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3344555555555544444 4678888999999998888777766666555555543
No 434
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=48.25 E-value=2.5e+02 Score=26.73 Aligned_cols=25 Identities=8% Similarity=0.177 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 170 CLECMRVLSDKLDKEVDDVTRDIEA 194 (379)
Q Consensus 170 C~ECtd~Lle~Ld~qle~~~~E~d~ 194 (379)
|..=.+.|-+.+..+...+..+++.
T Consensus 16 ~~~~i~~L~~q~~~~~~~i~~~r~~ 40 (206)
T PF14988_consen 16 KEKKIEKLWKQYIQQLEEIQRERQE 40 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455566666666666666665
No 435
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=48.24 E-value=1.9e+02 Score=25.24 Aligned_cols=69 Identities=17% Similarity=0.239 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (379)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~ 252 (379)
.+..+.-++.+..+...|.--+.++.-.. +--..|....+....+.+.+++.+.++.+++..+|...+.
T Consensus 41 ~e~~~~~~e~~l~~l~~~e~~~~k~q~~~------~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~ 109 (139)
T PF05615_consen 41 SEESQFLYERLLKELAQFEFSILKSQLIL------EMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKR 109 (139)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666665555543211 1112344455555566666666666666666666555443
No 436
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=48.21 E-value=39 Score=25.99 Aligned_cols=31 Identities=29% Similarity=0.382 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 227 RKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (379)
Q Consensus 227 ~~L~~eLeelEkE~~~l~~el~~le~e~~~L 257 (379)
..+.+++.+++++.+++.++..+++.+.+.+
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555555555554444
No 437
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=48.10 E-value=1.6e+02 Score=25.82 Aligned_cols=34 Identities=12% Similarity=0.346 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 245 AELKELELKSKRFKELEERYWQEFNNFQFQLIAH 278 (379)
Q Consensus 245 ~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~ 278 (379)
+.++..+.....+.++..+|+++.++-+.+...+
T Consensus 21 ~~i~~~~~~~~~la~ld~k~tkEL~~Ak~e~~~L 54 (125)
T PF03245_consen 21 AAIEDMQQRQQALAALDAKYTKELADAKAEIDRL 54 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4445555555677888888888887776653333
No 438
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=47.87 E-value=1.9e+02 Score=25.27 Aligned_cols=8 Identities=13% Similarity=0.488 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 016990 185 VDDVTRDI 192 (379)
Q Consensus 185 le~~~~E~ 192 (379)
+..++.++
T Consensus 18 La~Le~sl 25 (107)
T PF09304_consen 18 LASLERSL 25 (107)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 439
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=47.42 E-value=2.7e+02 Score=26.84 Aligned_cols=22 Identities=5% Similarity=0.240 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016990 178 SDKLDKEVDDVTRDIEAYEACL 199 (379)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL 199 (379)
|.-|++||.++..|...=..-+
T Consensus 12 IsLLKqQLke~q~E~~~K~~Ei 33 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVNQKDSEI 33 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHhHH
Confidence 6678888888877776544333
No 440
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=47.34 E-value=76 Score=24.56 Aligned_cols=17 Identities=35% Similarity=0.456 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016990 225 EERKLEAAIEETEKQNA 241 (379)
Q Consensus 225 EE~~L~~eLeelEkE~~ 241 (379)
|..+|..+++.++++..
T Consensus 5 E~~rL~Kel~kl~~~i~ 21 (66)
T PF10458_consen 5 EIERLEKELEKLEKEIE 21 (66)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444333
No 441
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=47.12 E-value=5.9e+02 Score=31.02 Aligned_cols=51 Identities=16% Similarity=0.165 Sum_probs=28.0
Q ss_pred CCccchHHHHHHHHHhhcCCCCcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016990 143 SGFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLE 203 (379)
Q Consensus 143 ~~lss~i~~l~~lFdIlSs~s~IDhPLC~ECtd~Lle~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (379)
.+|+.-.+.-.++|+|-++. -||. -++.|++--.+...|.+.|+.-|+.|+
T Consensus 162 WPLsEp~~LKkkfD~IF~~t---ky~K-------Ald~~kk~rkd~~~evk~~~~~l~~lk 212 (1294)
T KOG0962|consen 162 WPLSEPKNLKKKFDDIFSAT---KYTK-------ALDSLKKLRKDQSQEVKTKKQELEHLK 212 (1294)
T ss_pred CCCCChHHHHHHHHHHHHHH---HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555566666542 2333 345555555556667777766655554
No 442
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=47.05 E-value=1.8e+02 Score=29.00 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 228 KLEAAIEETEKQNAEVNAELKELELK 253 (379)
Q Consensus 228 ~L~~eLeelEkE~~~l~~el~~le~e 253 (379)
.+..+..+|+++.+.+..++..|..|
T Consensus 218 ~~~ae~seLq~r~~~l~~~L~~L~~e 243 (289)
T COG4985 218 HYVAEKSELQKRLAQLQTELDALRAE 243 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34445555555555555555555443
No 443
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=46.58 E-value=35 Score=31.74 Aligned_cols=8 Identities=50% Similarity=0.638 Sum_probs=0.0
Q ss_pred cccccCce
Q 016990 302 TNVLNDAF 309 (379)
Q Consensus 302 TNV~nd~F 309 (379)
|++.+..|
T Consensus 74 tp~~~~s~ 81 (166)
T PF04880_consen 74 TPVSNSSF 81 (166)
T ss_dssp --------
T ss_pred CCCccccC
Confidence 55554444
No 444
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=46.56 E-value=1.8e+02 Score=32.43 Aligned_cols=46 Identities=20% Similarity=0.337 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (379)
Q Consensus 213 e~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~ 258 (379)
.||.....+|--|..-|.-||+...+-..++++.|+++++|+++++
T Consensus 325 NDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k 370 (832)
T KOG2077|consen 325 NDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAK 370 (832)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445455555555555555555555555555555544443
No 445
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=46.54 E-value=2.3e+02 Score=28.59 Aligned_cols=81 Identities=15% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (379)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L 257 (379)
|.+|..++.....|...... ..+...++....+.+.++|+.+++.++++.+.+..+++.++......
T Consensus 1 l~el~~~~~~~~~~~r~l~~-------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (378)
T TIGR01554 1 LSELKEQREEIVAEIRSLLD-------------KAEKLEKELTAAALEKEELETDVEKLKEEIKLLEDAIADLEKVTEET 67 (378)
T ss_pred ChhHHHHHHHHHHHHHHHHh-------------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q ss_pred -----------HHHHHHHHHHHHHH
Q 016990 258 -----------KELEERYWQEFNNF 271 (379)
Q Consensus 258 -----------~eeEe~~w~e~n~~ 271 (379)
..+...+.+.|..+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (378)
T TIGR01554 68 KRNAGGGNDSGESQDEDRVRAFIKG 92 (378)
T ss_pred ccCCCCCCcchhhhhHHHHHHHHHH
No 446
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=46.53 E-value=3.5e+02 Score=27.93 Aligned_cols=30 Identities=27% Similarity=0.432 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 222 IEEEERKLEAAIEETEKQNAEVNAELKELE 251 (379)
Q Consensus 222 Le~EE~~L~~eLeelEkE~~~l~~el~~le 251 (379)
|+.|...++..|..||++.+-+-.|.+++.
T Consensus 31 ~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~ 60 (328)
T PF15369_consen 31 LKAEQESFEKKIRQLEEQNELIIKEREDLQ 60 (328)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344444455555555555544444444443
No 447
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=46.41 E-value=3.1e+02 Score=27.22 Aligned_cols=23 Identities=13% Similarity=0.188 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 016990 181 LDKEVDDVTRDIEAYEACLQRLE 203 (379)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~~L~ 203 (379)
++.++++++.+...-+.-++.++
T Consensus 84 ~~~~l~~a~a~l~~a~a~l~~~~ 106 (346)
T PRK10476 84 YELTVAQAQADLALADAQIMTTQ 106 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666555555443
No 448
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=46.33 E-value=3.8e+02 Score=29.42 Aligned_cols=61 Identities=20% Similarity=0.378 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhchhcccCCHHHHH---HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 016990 190 RDIEAYEACLQRLEGEARDVLSEADFL---KEKLKIEEEERKLEAAIE----ETEKQNAEVNAELKELEL 252 (379)
Q Consensus 190 ~E~d~Y~~fL~~L~~~~~~~~~ee~l~---~el~~Le~EE~~L~~eLe----elEkE~~~l~~el~~le~ 252 (379)
.+.+.|+.-++.|+... .-+..++. +++++|..|-+...+.++ +++...+++.+++++++.
T Consensus 191 ~~~~~yk~~v~~i~~~~--ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~ 258 (555)
T TIGR03545 191 QDLEEYKKRLEAIKKKD--IKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKK 258 (555)
T ss_pred hhHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 34556666666666532 22345443 355555555544333333 455555566666666654
No 449
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=46.31 E-value=4.8e+02 Score=29.38 Aligned_cols=15 Identities=7% Similarity=0.239 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHhhc
Q 016990 342 WGQACLLLHTMCQYF 356 (379)
Q Consensus 342 wGQ~~LLL~tla~kl 356 (379)
++.+-.|+...-.-+
T Consensus 378 F~e~~~lv~S~lDGY 392 (670)
T KOG0239|consen 378 FEEVSPLVQSALDGY 392 (670)
T ss_pred HHHHHHHHHHHhcCc
Confidence 566666666665543
No 450
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=45.97 E-value=7.2 Score=33.53 Aligned_cols=32 Identities=19% Similarity=0.339 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 226 ERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (379)
Q Consensus 226 E~~L~~eLeelEkE~~~l~~el~~le~e~~~L 257 (379)
.-++.+++.+||.+...+..++.+++.+...+
T Consensus 8 k~~laK~~~~LE~~l~~l~~el~~L~~~l~eL 39 (118)
T PF08286_consen 8 KFRLAKELSDLESELESLQSELEELKEELEEL 39 (118)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444433333
No 451
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=45.82 E-value=3.5e+02 Score=27.73 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=11.9
Q ss_pred HHHHHHhccccccCceeeeecC
Q 016990 294 AHLELLKRTNVLNDAFPIWHDG 315 (379)
Q Consensus 294 ~qLdkLrkTNV~nd~F~I~hdG 315 (379)
.-|.+|++----|.-=-..+||
T Consensus 115 eAL~rLrqeePq~lqa~V~td~ 136 (324)
T PF12126_consen 115 EALERLRQEEPQNLQAAVRTDG 136 (324)
T ss_pred HHHHHhhhhcCcccccceeccc
Confidence 4477777665555444444443
No 452
>PHA03161 hypothetical protein; Provisional
Probab=45.74 E-value=91 Score=28.73 Aligned_cols=15 Identities=40% Similarity=0.884 Sum_probs=13.1
Q ss_pred eeecccccCCCCCCC
Q 016990 318 GTINNFRLGRLPKIP 332 (379)
Q Consensus 318 GTINgfRLGrlp~~~ 332 (379)
.||=..||+++|.+|
T Consensus 132 dtI~~WRLE~lPrcP 146 (150)
T PHA03161 132 DTIMQWRIEALPRVP 146 (150)
T ss_pred hHHHHHHHhhCCCCC
Confidence 378899999999976
No 453
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=45.61 E-value=6.9 Score=43.20 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 016990 278 HQEERDAISSKIEVSQAHLELLK 300 (379)
Q Consensus 278 ~~eE~~sl~~q~~~~~~qLdkLr 300 (379)
++++..++....+....+.+.|+
T Consensus 396 L~ek~~~l~~eke~l~~e~~~L~ 418 (713)
T PF05622_consen 396 LEEKLEALEEEKERLQEERDSLR 418 (713)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333344444
No 454
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=45.53 E-value=5.3e+02 Score=29.70 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016990 269 NNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (379)
Q Consensus 269 n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLr 300 (379)
..++.++.+...+.+.+....+....+++.|+
T Consensus 226 ~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 226 ESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444444444444444444444444444443
No 455
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=45.53 E-value=2.3e+02 Score=25.55 Aligned_cols=36 Identities=19% Similarity=0.398 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCceeeeecCCc
Q 016990 279 QEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEF 317 (379)
Q Consensus 279 ~eE~~sl~~q~~~~~~qLdkLrkTNV~nd~F~I~hdG~f 317 (379)
..++..+.+....-+.++++|++-| ++|.=|.|.+.
T Consensus 67 r~~~~~~~~~l~~re~~i~rL~~EN---e~lR~Wa~t~L 102 (135)
T TIGR03495 67 RQQLAQARALLAQREQRIERLKREN---EDLRRWADTPL 102 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC---HHHHHHhcCCC
Confidence 3444555566666777788888775 67777777654
No 456
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=45.40 E-value=1.3e+02 Score=33.66 Aligned_cols=41 Identities=22% Similarity=0.332 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (379)
Q Consensus 218 el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~ 258 (379)
|+.++|...++|..+|+++-...++++++|...+.|..+|+
T Consensus 94 EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk 134 (907)
T KOG2264|consen 94 ELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALK 134 (907)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 44444444555555555555555555555555444444444
No 457
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=45.40 E-value=1.5e+02 Score=26.29 Aligned_cols=40 Identities=15% Similarity=0.121 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 236 TEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQL 275 (379)
Q Consensus 236 lEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL 275 (379)
|....-++...++-+......+..+|++.+..+..+..++
T Consensus 84 L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~~le~l~~~l 123 (141)
T PF13874_consen 84 LSHRLLRVLRKQEILRNRGYALSPEEEELRKRLEALEAQL 123 (141)
T ss_dssp HHHHHHHHHHHHHHHHH-----------------------
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3333333344444444455556666666666665555443
No 458
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=45.00 E-value=2.9e+02 Score=32.60 Aligned_cols=12 Identities=17% Similarity=0.144 Sum_probs=6.1
Q ss_pred CceeecccccCC
Q 016990 316 EFGTINNFRLGR 327 (379)
Q Consensus 316 ~fGTINgfRLGr 327 (379)
..|.-+|.-.|.
T Consensus 548 ~~~~~~~~~~~~ 559 (1021)
T PTZ00266 548 GVGAGVGAGVGT 559 (1021)
T ss_pred ccccccccccCC
Confidence 344555555553
No 459
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=44.90 E-value=1.5e+02 Score=23.13 Aligned_cols=29 Identities=28% Similarity=0.433 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 230 EAAIEETEKQNAEVNAELKELELKSKRFK 258 (379)
Q Consensus 230 ~~eLeelEkE~~~l~~el~~le~e~~~L~ 258 (379)
.+.|.+++....+..+.|..++.|...+.
T Consensus 24 ~~~i~~~e~~l~ea~~~l~qMe~E~~~~p 52 (79)
T PF05008_consen 24 KSLIREIERDLDEAEELLKQMELEVRSLP 52 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34455555555555556666666555443
No 460
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=44.74 E-value=1.1e+02 Score=26.28 Aligned_cols=43 Identities=26% Similarity=0.381 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 211 SEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (379)
Q Consensus 211 ~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e 253 (379)
+..++...+.-.|+|-.-|.+.|.++|++.+.+..||...+.+
T Consensus 2 ~~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~ 44 (96)
T PF11365_consen 2 DSAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSK 44 (96)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 461
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=44.59 E-value=4.3e+02 Score=28.37 Aligned_cols=7 Identities=29% Similarity=0.572 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 016990 194 AYEACLQ 200 (379)
Q Consensus 194 ~Y~~fL~ 200 (379)
.|..|+.
T Consensus 132 ~~~~~~~ 138 (446)
T KOG4438|consen 132 LYRPFIQ 138 (446)
T ss_pred HHHHHHH
Confidence 3433333
No 462
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=44.44 E-value=4.3e+02 Score=28.35 Aligned_cols=122 Identities=23% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 016990 178 SDKLDKEVDDVTRDIEA-YEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKS-- 254 (379)
Q Consensus 178 le~Ld~qle~~~~E~d~-Y~~fL~~L~~~~~~~~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~-- 254 (379)
++.|.+++..+..+.+. ....|+.-..+.......+....-..++.++++.+..+++....+..+.-++.-+.+.+.
T Consensus 260 i~~L~~~l~~l~~~~~~~l~~~L~~q~~e~~~~~~~~~~~~le~~~~~~~~~~~~e~~~~~~~l~~~~~~~L~~eL~~~~ 339 (582)
T PF09731_consen 260 IDALQKELAELKEEEEEELERALEEQREELLSKLREELEQELEEKRAELEEELREEFEREREELEEKYEEELRQELKRQE 339 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016990 255 --------KRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (379)
Q Consensus 255 --------~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrk 301 (379)
..+..++.+++++|+..-.. ....||..-..++.....+|+.|.+
T Consensus 340 ~~~~~~l~~~l~~~~~e~~~~~~~~i~~--~v~~Er~~~~~~l~~~~~~~~~le~ 392 (582)
T PF09731_consen 340 EAHEEHLKNELREQAIELQREFEKEIKE--KVEQERNGRLAKLAELNSRLKALEE 392 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
No 463
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=44.35 E-value=4.2e+02 Score=28.19 Aligned_cols=55 Identities=4% Similarity=0.002 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQ 272 (379)
Q Consensus 218 el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q 272 (379)
.++.+.++...+..+|+.++.-...+.-..+..++...+.--+|++|.+.-.++-
T Consensus 247 qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V~eEQqfL~~QedL~ 301 (424)
T PF03915_consen 247 QLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQKVCEEQQFLKLQEDLL 301 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666666666665666666544444456666666555553
No 464
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=44.30 E-value=3.1e+02 Score=28.31 Aligned_cols=26 Identities=23% Similarity=0.463 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016990 179 DKLDKEVDDVTRDIEAYEACLQRLEG 204 (379)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~~L~~ 204 (379)
+.|++++.++++....|..-++.+.+
T Consensus 7 ~eL~~efq~Lqethr~Y~qKleel~~ 32 (330)
T PF07851_consen 7 EELQKEFQELQETHRSYKQKLEELSK 32 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45888999998888888877776654
No 465
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=44.12 E-value=5.6e+02 Score=29.61 Aligned_cols=83 Identities=13% Similarity=0.208 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL----EERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 297 (379)
Q Consensus 222 Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~ee----Ee~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLd 297 (379)
|+...++..+.++.|....+++-+.++.++.|.+++-.+ +.++.+....|..+...+.-|.....+++...+-.|+
T Consensus 439 Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe 518 (861)
T PF15254_consen 439 LQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLE 518 (861)
T ss_pred HHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 556666666677777777777777777777666655433 6677777777777777777777777778888888888
Q ss_pred HHhcccc
Q 016990 298 LLKRTNV 304 (379)
Q Consensus 298 kLrkTNV 304 (379)
.-.+-|.
T Consensus 519 ~sekEN~ 525 (861)
T PF15254_consen 519 ASEKENQ 525 (861)
T ss_pred HHHhhhh
Confidence 8777774
No 466
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=44.10 E-value=2e+02 Score=28.09 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 016990 280 EERDAISSKIEVSQAHLELLKR 301 (379)
Q Consensus 280 eE~~sl~~q~~~~~~qLdkLrk 301 (379)
.+.+....+|..++..++.++.
T Consensus 135 ~~~d~~~~~~~~a~~~l~~~~~ 156 (327)
T TIGR02971 135 SDLDSKALKLRTAEEELEEALA 156 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555543
No 467
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=44.09 E-value=44 Score=29.32 Aligned_cols=86 Identities=16% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH----HHHHHHHHHHHh
Q 016990 227 RKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIA--HQEERDAISSK----IEVSQAHLELLK 300 (379)
Q Consensus 227 ~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~--~~eE~~sl~~q----~~~~~~qLdkLr 300 (379)
.++-.++..+|.+.-.+-+++..++.....+-++....--+-..+...|.+ +++.--.-+.. ......+|.+|
T Consensus 4 keiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~~~~e~~~~~k~~~~~~~~~~~~dnL~~l- 82 (114)
T COG4467 4 KEIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGEPTLEKTAVKKEKPAVKKKGEGYDNLARL- 82 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCCccccchhhhcccccccccCCCchhHHHH-
Q ss_pred ccccccCceeeeecCCce
Q 016990 301 RTNVLNDAFPIWHDGEFG 318 (379)
Q Consensus 301 kTNV~nd~F~I~hdG~fG 318 (379)
|++-|||.+ -+||
T Consensus 83 ----Y~EGFHICn-~hyG 95 (114)
T COG4467 83 ----YQEGFHICN-VHYG 95 (114)
T ss_pred ----HhccchhHH-HHhc
No 468
>PF05461 ApoL: Apolipoprotein L; InterPro: IPR008405 Apo L belongs to the high density lipoprotein family that plays a central role in cholesterol transport. The cholesterol content of membranes is important in cellular processes such as modulating gene transcription and signal transduction both in the adult brain and during neurodevelopment. There are six apo L genes located in close proximity to each other on chromosome 22q12 in humans. 22q12 is a confirmed high-susceptibility locus for schizophrenia and close to the region associated with velocardiofacial syndrome that includes symptoms of schizophrenia []. The various functions of apoL are still not entirely clear. Apolipoprotein L-I has been identified as a trypanolytic agent [] and displays similar phylogenetic distribution to the programmed cell death protein Bcl-2 and BH-3 domain-containing proteins, suggesting a possible role in apoptosis [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region
Probab=43.97 E-value=2.4e+02 Score=28.62 Aligned_cols=92 Identities=17% Similarity=0.227 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 016990 224 EEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTN 303 (379)
Q Consensus 224 ~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrkTN 303 (379)
.|+..|.+.|++|......-++++. .+..+.++.|.++|..++.+|.++-.++..+..+++.. -..-..+|
T Consensus 29 de~d~l~~~L~~l~~~~~~~d~~~~------~~~~~~~~~FL~~Fp~~k~~Le~~I~kL~~lAd~idk~---Hk~~tisn 99 (313)
T PF05461_consen 29 DEADALREALKELTEDMDSEDKDRS------QKDQQDRERFLKEFPQLKEELEEHIRKLRALADEIDKV---HKDCTISN 99 (313)
T ss_pred hhHHHHHHHHHHHHhhhhccccchh------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---HHhhHHHH
Confidence 4455556666666554332222211 11123467899999999999999998888876665433 23345566
Q ss_pred cccCceeeeecCCceeecccccC
Q 016990 304 VLNDAFPIWHDGEFGTINNFRLG 326 (379)
Q Consensus 304 V~nd~F~I~hdG~fGTINgfRLG 326 (379)
|.--..-| -|..-||=||=|.
T Consensus 100 vv~ss~g~--vsGilsIlGLaLA 120 (313)
T PF05461_consen 100 VVGSSTGA--VSGILSILGLALA 120 (313)
T ss_pred HHhhhHHH--HhhHHHHHhHHhc
Confidence 66555443 2556667776665
No 469
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=43.93 E-value=4.3e+02 Score=28.17 Aligned_cols=86 Identities=17% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAE-VNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEV 291 (379)
Q Consensus 213 e~l~~el~~Le~EE~~L~~eLeelEkE~~~-l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~ 291 (379)
..+.+|+.++++-...|+.-.+.|+.+... +.==.+.|++|.-+.+.+|++.-...--.|.+...+..|+.+++.++.|
T Consensus 263 ~aileeL~eIk~~q~~Leesye~Lke~~krdy~fi~etLQEERyR~erLEEqLNdlteLqQnEi~nLKqElasmeervaY 342 (455)
T KOG3850|consen 263 DAILEELREIKETQALLEESYERLKEQIKRDYKFIAETLQEERYRYERLEEQLNDLTELQQNEIANLKQELASMEERVAY 342 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 016990 292 SQAHLEL 298 (379)
Q Consensus 292 ~~~qLdk 298 (379)
....-.|
T Consensus 343 QsyERaR 349 (455)
T KOG3850|consen 343 QSYERAR 349 (455)
T ss_pred HHHHHHH
No 470
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=43.80 E-value=1.4e+02 Score=27.76 Aligned_cols=23 Identities=4% Similarity=0.211 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 016990 279 QEERDAISSKIEVSQAHLELLKR 301 (379)
Q Consensus 279 ~eE~~sl~~q~~~~~~qLdkLrk 301 (379)
+.++..+++++..++.+|+.++.
T Consensus 60 ~~~~~~~~~~~~~~~~~l~~~~~ 82 (265)
T TIGR00999 60 EYALEEAQAEVQAAKSELRSARE 82 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Confidence 33444445555556666655543
No 471
>PRK10698 phage shock protein PspA; Provisional
Probab=43.79 E-value=3e+02 Score=26.34 Aligned_cols=25 Identities=12% Similarity=0.205 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 173 CMRVLSDKLDKEVDDVTRDIEAYEA 197 (379)
Q Consensus 173 Ctd~Lle~Ld~qle~~~~E~d~Y~~ 197 (379)
=.+.++..|...+..+.........
T Consensus 28 ~l~q~i~em~~~l~~~r~alA~~~A 52 (222)
T PRK10698 28 LVRLMIQEMEDTLVEVRSTSARALA 52 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555444433333
No 472
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=43.51 E-value=45 Score=30.28 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016990 224 EEERKLEAAIEETEKQNA 241 (379)
Q Consensus 224 ~EE~~L~~eLeelEkE~~ 241 (379)
.++++|.+|+.++.+|..
T Consensus 40 ~~~~~l~~Ei~~l~~E~~ 57 (161)
T PF04420_consen 40 KEQRQLRKEILQLKRELN 57 (161)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 473
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit
Probab=43.32 E-value=3.1e+02 Score=26.44 Aligned_cols=25 Identities=16% Similarity=0.286 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 256 RFKELEERYWQEFNNFQFQLIAHQE 280 (379)
Q Consensus 256 ~L~eeEe~~w~e~n~~q~qL~~~~e 280 (379)
.+-..+.+||.+...+..+|.+..+
T Consensus 183 al~~~q~~f~~E~~k~~~~l~~~~~ 207 (211)
T cd07611 183 NVSSLEAKFHKEISVLCHKLYEVMT 207 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777777766666555443
No 474
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=42.85 E-value=4.1e+02 Score=27.68 Aligned_cols=40 Identities=15% Similarity=0.370 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016990 262 ERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (379)
Q Consensus 262 e~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrk 301 (379)
..|-..|..+-.++..-+.-++.+..-..-+..+|++|+.
T Consensus 342 ~~F~~aY~~LL~Ev~RRr~~~~k~~~i~~~~~eeL~~l~e 381 (412)
T PF04108_consen 342 EGFLSAYDSLLLEVERRRAVRDKMKKIIREANEELDKLRE 381 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677776665555454455566666677777887764
No 475
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=42.80 E-value=3.8e+02 Score=27.30 Aligned_cols=104 Identities=16% Similarity=0.328 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q 016990 169 LCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAA--IEETEKQNAEVNAE 246 (379)
Q Consensus 169 LC~ECtd~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~el~~Le~EE~~L~~e--LeelEkE~~~l~~e 246 (379)
+|.-=...-|.+-..+|.+-+.|++..+.-|.|.++ +=+|+|=.+.+++ |++..+|.++|.+-
T Consensus 68 V~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrE---------------DWIEEECHRVEAQLALKEARkEIkQLkQv 132 (305)
T PF15290_consen 68 VCIRHLKAKLKESENRLHDRETEIDELKSQLARMRE---------------DWIEEECHRVEAQLALKEARKEIKQLKQV 132 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 247 LKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQA 294 (379)
Q Consensus 247 l~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~ 294 (379)
++-.+.-...-+.=-++|+.+.|-- ..++.++..-++.|++
T Consensus 133 ieTmrssL~ekDkGiQKYFvDINiQ-------N~KLEsLLqsMElAq~ 173 (305)
T PF15290_consen 133 IETMRSSLAEKDKGIQKYFVDINIQ-------NKKLESLLQSMELAQS 173 (305)
T ss_pred HHHHHhhhchhhhhHHHHHhhhhhh-------HhHHHHHHHHHHHHHh
No 476
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=42.70 E-value=3.4e+02 Score=26.64 Aligned_cols=147 Identities=12% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 177 LSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (379)
Q Consensus 177 Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~ 256 (379)
....+...+..+++=++.|..--+..+.-.....+..++.+-..++..-.+.-...|+.+.+....-..++...=....+
T Consensus 121 ~~~~~~~~~~~~~KaK~~Y~~~c~e~e~~~~~~~t~k~leK~~~k~~ka~~~Y~~~v~~l~~~~~~~~~~m~~~~~~~Q~ 200 (269)
T cd07673 121 AVQNIQSITQALQKSKENYNAKCLEQERLKKEGATQREIEKAAVKSKKATESYKLYVEKYALAKADFEQKMTETAQKFQD 200 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhccccccCceeeeecCCceeecccccCCCCCCCCCh
Q 016990 257 FKELEERYWQEFNNFQFQLIAHQ-EERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEW 335 (379)
Q Consensus 257 L~eeEe~~w~e~n~~q~qL~~~~-eE~~sl~~q~~~~~~qLdkLrkTNV~nd~F~I~hdG~fGTINgfRLGrlp~~~V~W 335 (379)
++++=-.|.++.=.--.+..... -..+.+-..+..+..++|.-+-.+.| |+...-|--|..||++
T Consensus 201 ~Ee~Ri~~~k~~l~~y~~~~s~~~~~~~~~~e~ir~~le~~d~~~Di~~f--------------i~~~gTG~~~P~~~~f 266 (269)
T cd07673 201 IEETHLIRIKEIIGSYSNSVKEIHIQIGQVHEEFINNMANTTVESLIQKF--------------AESKGTGKERPGPIEF 266 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhCCHHHHHHHH--------------HHhcCCCCCCCCCCCC
Q ss_pred hh
Q 016990 336 DE 337 (379)
Q Consensus 336 ~E 337 (379)
.+
T Consensus 267 E~ 268 (269)
T cd07673 267 EE 268 (269)
T ss_pred CC
No 477
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=42.65 E-value=69 Score=26.13 Aligned_cols=33 Identities=18% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 231 AAIEETEKQNAEVNAELKELELKSKRFKELEERYWQ 266 (379)
Q Consensus 231 ~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~ 266 (379)
++|.++-+.+.+|+++|..+|.++ -+.|..|+.
T Consensus 2 ~~L~~l~~~k~~Le~~L~~lE~qI---y~~Et~YL~ 34 (80)
T PF09340_consen 2 KELKELLQKKKKLEKDLAALEKQI---YDKETSYLE 34 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
No 478
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=42.61 E-value=4.4e+02 Score=27.91 Aligned_cols=141 Identities=16% Similarity=0.215 Sum_probs=0.0
Q ss_pred CccchHHHHHHHHHhhcCCCCcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHH
Q 016990 144 GFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIE 223 (379)
Q Consensus 144 ~lss~i~~l~~lFdIlSs~s~IDhPLC~ECtd~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~el~~Le 223 (379)
+++.-+.+|.+=|.|+-.+ ||.---.-|++.-++.||+-..+-..-...-...|..+++..+..+ ++||
T Consensus 56 NinDP~~ALqRDf~~l~Ek--~D~EK~p~ct~spl~iL~~mM~qcKnmQe~~~s~LaAaE~khrKli---------~dLE 124 (561)
T KOG1103|consen 56 NINDPFAALQRDFAILGEK--IDEEKIPQCTESPLDILDKMMAQCKNMQENAASLLAAAEKKHRKLI---------KDLE 124 (561)
T ss_pred ccCChHHHHHHHHHHHhcc--ccccccceeccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 224 EEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 295 (379)
Q Consensus 224 ~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~q 295 (379)
++.+.-.+--.+-..=..-|+.|.+.|+.+++=-.++-+.+-.....+..+|.+-.....++-..+..-..+
T Consensus 125 ~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeqis~mLilEcKk 196 (561)
T KOG1103|consen 125 ADREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQISLMLILECKK 196 (561)
T ss_pred HHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 479
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=42.16 E-value=1.8e+02 Score=23.45 Aligned_cols=69 Identities=19% Similarity=0.333 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHH-HHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 178 SDKLDKEVDDVTRDIEAYE---ACLQ-RLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELK 248 (379)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~---~fL~-~L~~~~~~~~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~ 248 (379)
+...+.+++.+.+|.=... -||. +|.+...+ +.+++.++.-+|+.+-..|..++.+..+...++...++
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~--~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~e 74 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPE--SIEELLKENIELKVEVESLKRELQEKKKLLKEAEKAIE 74 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 480
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=42.12 E-value=1.9e+02 Score=25.74 Aligned_cols=67 Identities=27% Similarity=0.356 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (379)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~l 250 (379)
+..|-+-+-...+.++....-|=-+.. ++++-.+.+.+|++|.+...+++.+.-++.+++-+.+..+
T Consensus 71 ~~elA~dIi~kakqIe~LIdsLPg~~~------see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~ 137 (144)
T PF11221_consen 71 IKELATDIIRKAKQIEYLIDSLPGIEV------SEEEQLKRIKELEEENEEAEEELQEAVKEAEELLKQVQEL 137 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTSSS-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 481
>PF13166 AAA_13: AAA domain
Probab=41.83 E-value=5e+02 Score=28.33 Aligned_cols=184 Identities=21% Similarity=0.242 Sum_probs=0.0
Q ss_pred ccchHHHHHHHHHhhcCCCCcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHH
Q 016990 145 FHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEE 224 (379)
Q Consensus 145 lss~i~~l~~lFdIlSs~s~IDhPLC~ECtd~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~el~~Le~ 224 (379)
+...+..+... +..-..++..++=.+-....+..+...++..+..++.+....+.++.+ .+.+...+.....
T Consensus 334 l~~~l~~l~~~--L~~K~~~~~~~~~~~~~~~~~~~l~~~i~~~n~~i~~~n~~~~~~~~~------~~~~~~~~~~~~~ 405 (712)
T PF13166_consen 334 LKEELEELKKA--LEKKIKNPSSPIELEEINEDIDELNSIIDELNELIEEHNEKIDNLKKE------QNELKDKLWLHLI 405 (712)
T ss_pred HHHHHHHHHHH--HHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 016990 225 EERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNV 304 (379)
Q Consensus 225 EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrkTNV 304 (379)
.++...+....++...+..++..++.+...+...-...=.+...++.++.....-.+.++..+...-..--+|....-
T Consensus 406 --~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~g~~~~~l~~~~~ 483 (712)
T PF13166_consen 406 --AKLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRLGFSNFSLEIVDD 483 (712)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCeEEEEecC
Q ss_pred ccCceeeeecCCceeecccccCCCCCCCCChhhHHHHHHHHHHHHHHHHh
Q 016990 305 LNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQ 354 (379)
Q Consensus 305 ~nd~F~I~hdG~fGTINgfRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~ 354 (379)
...|.|.+.| |..|..-.+.-|= -++-|+++||.
T Consensus 484 -~~~y~l~~~~----------~~~~~~~LSEGEk-----~~iAf~yFla~ 517 (712)
T PF13166_consen 484 -DKGYKLQRKG----------GSKPAKILSEGEK-----RAIAFAYFLAE 517 (712)
T ss_pred -CCeEEEEECC----------CCcccCccCHHHH-----HHHHHHHHHHH
No 482
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=41.73 E-value=4.4e+02 Score=27.64 Aligned_cols=111 Identities=14% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 179 DKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (379)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~ 258 (379)
.-|+.++....+.-+-...--+.+++. +.|.+.|...-++|..+|-.+..=..+...+...+|.-...++
T Consensus 71 ~llq~kirk~~e~~eglr~i~es~~e~----------q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~ 140 (401)
T PF06785_consen 71 QLLQTKIRKITEKDEGLRKIRESVEER----------QQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLR 140 (401)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH----------HHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 259 ELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (379)
Q Consensus 259 eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkL 299 (379)
++..++--..++++.+..+.++|.+.++..+.-+.+--.-|
T Consensus 141 EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L 181 (401)
T PF06785_consen 141 EENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQEL 181 (401)
T ss_pred HHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHH
No 483
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=41.54 E-value=7.4e+02 Score=30.21 Aligned_cols=124 Identities=15% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (379)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~ 254 (379)
.....-+......+...+..|...|++|.. ..++...-..++..-..+|..+.+++.+-.+++..+..+.+.+.
T Consensus 699 ~~f~~ll~~k~~~~~~~~~r~~~gl~kl~~------a~~~v~~l~~~l~~~~~el~~~~~~a~~~l~~i~~~~~~~e~~k 772 (1395)
T KOG3595|consen 699 GTFKKLLKEKRSEVRLRKLRLELGLDKLKE------AGEQVAGLQKELAALQPELQVKSKEANDVLAKILKETQAAEAQK 772 (1395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhhH------HHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHhhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 016990 255 KRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNV 304 (379)
Q Consensus 255 ~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrkTNV 304 (379)
....+.|+.-=...-..+.+.....+.+.....-++.|++-+.-++++++
T Consensus 773 ~~v~~~e~~~~~~~~~~~~~k~~v~~~l~~a~P~leeA~aal~ti~k~~l 822 (1395)
T KOG3595|consen 773 EAVLEDEKKAQEKAGLIQAQKAEVEEDLEEAEPALEEASAALSTIKKADL 822 (1395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCChhhH
No 484
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=41.51 E-value=2.7e+02 Score=25.54 Aligned_cols=91 Identities=24% Similarity=0.336 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 016990 224 EEERKLEAAIEETEKQNAEVNAELKELEL-KSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 302 (379)
Q Consensus 224 ~EE~~L~~eLeelEkE~~~l~~el~~le~-e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrkT 302 (379)
.++..+..-+..++.+......|+..|.. ....++..|+ +.-...++.++++-- |+.|...
T Consensus 54 r~~~~~~~~v~~~~~~i~~k~~El~~L~~~d~~kv~~~E~--------L~d~v~eLkeel~~e----------l~~l~~~ 115 (146)
T PF05852_consen 54 REECEIKNKVSSLETEISEKKKELSHLKKFDRKKVEDLEK--------LTDRVEELKEELEFE----------LERLQSA 115 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH--------HHHHHHHHHHHHHHH----------HHHHhcc
Q ss_pred ccccCceeeeecCCceeecccccCCCCCCC
Q 016990 303 NVLNDAFPIWHDGEFGTINNFRLGRLPKIP 332 (379)
Q Consensus 303 NV~nd~F~I~hdG~fGTINgfRLGrlp~~~ 332 (379)
--=++.-.=.+..+=.||=-.||.++|.+|
T Consensus 116 ~~~~e~~~~~~~~~~d~I~~WRLe~lP~vp 145 (146)
T PF05852_consen 116 GGSQESLSGEEEEPDDTIMQWRLEALPRVP 145 (146)
T ss_pred CCCCCCCCCCCCCcccHHHHHHhhcCCCCC
No 485
>PF09321 DUF1978: Domain of unknown function (DUF1978); InterPro: IPR015400 This domain is found in various hypothetical proteins produced by the bacterium Chlamydia pneumoniae. Their exact function has not, as yet, been identified. This entry includes the IncA proteins
Probab=41.29 E-value=3.7e+02 Score=26.65 Aligned_cols=109 Identities=17% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 016990 185 VDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEE--------ERKLEAAIEETEKQNA-EVNAELKELELKSK 255 (379)
Q Consensus 185 le~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~el~~Le~E--------E~~L~~eLeelEkE~~-~l~~el~~le~e~~ 255 (379)
...+++.-+.|.++++++-. .++.+...+|++- ....+.+.+..-.... .|+.-...++.+..
T Consensus 93 qk~l~d~~~~~~~~~~~~~~--------qE~~ra~eRl~~LqalYp~v~v~~~e~~~q~t~~~~~~dLe~~~e~IE~~y~ 164 (241)
T PF09321_consen 93 QKKLKDAEKRRLRCLQDFYD--------QEIERAQERLRELQALYPEVSVSEVETERQETVSSNASDLEKAYENIEEEYQ 164 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhccccchHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016990 256 RFKELEERYWQEFNNFQ----------FQLIAHQEERDAISSKIEVSQAHLELLKR 301 (379)
Q Consensus 256 ~L~eeEe~~w~e~n~~q----------~qL~~~~eE~~sl~~q~~~~~~qLdkLrk 301 (379)
..-++.+-||++.-... +-+.++++-+++|+..+.....+|+.++.
T Consensus 165 ~cv~eQe~YWke~e~~E~Efre~~~k~~s~ee~~~~l~~Le~~l~~~~~~L~~~e~ 220 (241)
T PF09321_consen 165 QCVREQEDYWKEEEKKEAEFREEGGKVLSLEEVQEGLQSLEDLLEAWSKQLDKAEK 220 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 486
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=41.24 E-value=4e+02 Score=27.05 Aligned_cols=82 Identities=13% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 298 (379)
Q Consensus 219 l~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdk 298 (379)
+..|..+..+++..-....-..++|++|-..+.=+..-|++.=+..-..+..++++..+...++..++..+...+.+++-
T Consensus 79 ~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~ 158 (302)
T PF09738_consen 79 LRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDE 158 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred Hh
Q 016990 299 LK 300 (379)
Q Consensus 299 Lr 300 (379)
|+
T Consensus 159 Lr 160 (302)
T PF09738_consen 159 LR 160 (302)
T ss_pred HH
No 487
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=41.03 E-value=1.3e+02 Score=31.31 Aligned_cols=73 Identities=11% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHH-HHHHHH
Q 016990 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKE--LELKSKRFKELEERYWQEFNNF-QFQLIAHQE-ERDA-ISSKIE 290 (379)
Q Consensus 218 el~~Le~EE~~L~~eLeelEkE~~~l~~el~~--le~e~~~L~eeEe~~w~e~n~~-q~qL~~~~e-E~~s-l~~q~~ 290 (379)
|.-.|..|-.+|.+|.++|..|.++|+++... +.++.+..+..=+..-+-.|.+ +.-+.+..+ ++++ +.++++
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l~s~V~E~vet~dv~~d~i~Kimnk~Re~vlfq~d~~~ld~~lLARve 110 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERLENEMLRSHVCEDVETNDVIYDKIVKIMNKMRELVLFQRDDLKLDSVLLARVE 110 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHH
No 488
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=40.91 E-value=5.2e+02 Score=30.36 Aligned_cols=119 Identities=22% Similarity=0.312 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 168 PLCLECMRVLSDKLDKEVDDVTRDIEAYE-ACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAE 246 (379)
Q Consensus 168 PLC~ECtd~Lle~Ld~qle~~~~E~d~Y~-~fL~~L~~~~~~~~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~e 246 (379)
|+-.|=...|--+.+.+|+-.-+|+.... ..|+.++ ++-+....+.+|.+-+.+..+++++.++++.+..+
T Consensus 953 eis~Ed~kkLhaE~daeLe~~~ael~eleqk~le~~e--------Dea~aRh~kefE~~mrdhrselEe~kKe~eaiine 1024 (1424)
T KOG4572|consen 953 EISEEDKKKLHAEIDAELEKEFAELIELEQKALECKE--------DEAFARHEKEFEIEMRDHRSELEEKKKELEAIINE 1024 (1424)
T ss_pred cccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016990 247 LKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (379)
Q Consensus 247 l~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLr 300 (379)
+.+++.+.-+..+-| .-..++.....-+-+..++..+..-....|+.+
T Consensus 1025 iee~eaeIiQekE~e------l~e~efka~d~Sd~r~kie~efAa~eaemdeik 1072 (1424)
T KOG4572|consen 1025 IEELEAEIIQEKEGE------LIEDEFKALDESDPRAKIEDEFAAIEAEMDEIK 1072 (1424)
T ss_pred HHHHHHHHHhcccch------HHHHHhhhccccCcchhHHHHHHHHHhhhhhhh
No 489
>COG3334 Uncharacterized conserved protein [Function unknown]
Probab=40.87 E-value=2.3e+02 Score=27.10 Aligned_cols=63 Identities=35% Similarity=0.352 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 298 (379)
Q Consensus 219 l~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdk 298 (379)
.+.+..+...+..++.+.+++.+.+++.++.++.+..+++..+ +++.-+... .+.+.++
T Consensus 65 ~da~~dq~~~~q~e~~~~lk~~a~~~E~lk~lE~~kae~k~~~------------------e~re~~l~~---~qae~~k 123 (192)
T COG3334 65 ADAAADQLYALQKELLEKLKDLAEVNERLKALEKKKAELKDLE------------------EEREGILRS---KQAEDGK 123 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHH---HHhhhhH
Q ss_pred Hhcc
Q 016990 299 LKRT 302 (379)
Q Consensus 299 LrkT 302 (379)
|-++
T Consensus 124 lv~i 127 (192)
T COG3334 124 LVKI 127 (192)
T ss_pred HHHH
No 490
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=40.79 E-value=3.5e+02 Score=26.29 Aligned_cols=81 Identities=21% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (379)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L 257 (379)
++.|..+++.+.+.++.|..-++++...... ....+.+--.+.++....+......+..+...++.++.++-.+...+
T Consensus 70 le~Le~el~~l~~~~~~~~~~~~~lq~~~~~--~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~k~~~~l~~l~~~v~~l 147 (256)
T PF14932_consen 70 LEALEEELEALQEYKELYEQLRNKLQQLDSS--LSQELSELEGKEEEAQKKLKKAQKELSAECSKLNNELNQLLGEVSKL 147 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 016990 258 KEL 260 (379)
Q Consensus 258 ~ee 260 (379)
-..
T Consensus 148 ~~~ 150 (256)
T PF14932_consen 148 ASE 150 (256)
T ss_pred HHH
No 491
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=40.63 E-value=50 Score=25.74 Aligned_cols=31 Identities=16% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 229 LEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (379)
Q Consensus 229 L~~eLeelEkE~~~l~~el~~le~e~~~L~e 259 (379)
+++.|..||+.+.+.+++....+.+....++
T Consensus 30 iEqRLa~LE~rL~~ae~ra~~ae~~~~~~kq 60 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRAQAAEARAKQAKQ 60 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 492
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=40.44 E-value=2.9e+02 Score=25.99 Aligned_cols=64 Identities=16% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 222 IEEEERKLEAAIE-ETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKI 289 (379)
Q Consensus 222 Le~EE~~L~~eLe-elEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~ 289 (379)
+.+|...-...|. .++.-..+++.||++++.+...++... .....++..-..++.+++....+|
T Consensus 103 VqqeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~----~~~k~LrnKa~~L~~eL~~F~~~y 167 (171)
T PF04799_consen 103 VQQELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQ----SKSKTLRNKANWLESELERFQEQY 167 (171)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHh
No 493
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=40.41 E-value=1.8e+02 Score=22.83 Aligned_cols=61 Identities=21% Similarity=0.342 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 180 KLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAE 246 (379)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~e 246 (379)
.|+.-|+.-.+-++....-|++++. +.-.+...+..-+..-+.|.++|+.|+++.+++..+
T Consensus 1 elQsaL~~EirakQ~~~eEL~kvk~------~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~~ 61 (61)
T PF08826_consen 1 ELQSALEAEIRAKQAIQEELTKVKS------ANLAFESKLQEAEKRNRELEQEIERLKKEMEELRSR 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CHHhHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 494
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=40.41 E-value=3.5e+02 Score=26.16 Aligned_cols=83 Identities=14% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 212 EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEV 291 (379)
Q Consensus 212 ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~ 291 (379)
+..+.++...|+...+.|.+++..++.+...+++|...+.++..++.+.-++.-.+...-+.+...-+.+.----..+-+
T Consensus 33 e~~~~~d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~~~~~~e~~~~~e~~r~~fekekqq~~~~~t~~Lw 112 (228)
T PRK06800 33 EEEIQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQQMKEIEAARQQFQKEQQETAYEWTELLW 112 (228)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 016990 292 SQA 294 (379)
Q Consensus 292 ~~~ 294 (379)
.+.
T Consensus 113 deS 115 (228)
T PRK06800 113 DQS 115 (228)
T ss_pred HHH
No 495
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=40.20 E-value=2.5e+02 Score=24.47 Aligned_cols=106 Identities=8% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (379)
Q Consensus 174 td~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e 253 (379)
+..-++....+++.+...+..|..-+..-....-++..--.+..=+..|..........+..++.+.+.....+.+...+
T Consensus 28 a~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~g~~~~~l~~~~~fl~~L~~~i~~q~~~v~~~~~~ve~~r~~~~ea~~~ 107 (146)
T PRK07720 28 AVSRFEQVAEKLYELLKQKEDLEQAKEEKLQSGLSIQEIRHYQQFVTNLERTIDHYQLLVMQAREQMNRKQQDLTEKNIE 107 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 254 SKRFKELEERYWQEFNNFQFQLIAHQ 279 (379)
Q Consensus 254 ~~~L~eeEe~~w~e~n~~q~qL~~~~ 279 (379)
.+.++.+-++...+|..-+.......
T Consensus 108 ~k~~ekLker~~~~~~~~e~r~EQk~ 133 (146)
T PRK07720 108 VKKYEKMKEKKQEMFALEEKAAEMKE 133 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
No 496
>PLN02320 seryl-tRNA synthetase
Probab=40.14 E-value=2.2e+02 Score=30.84 Aligned_cols=69 Identities=13% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAEL 247 (379)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el 247 (379)
+.....+..+++.+..|++.-..-+.. .......+.+.++...|.++...|++++.+++.+..++...|
T Consensus 99 d~~~r~~~~~~~~lr~ern~~sk~i~~----~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~i 167 (502)
T PLN02320 99 YENMLALQKEVERLRAERNAVANKMKG----KLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSI 167 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh----hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 497
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=39.92 E-value=3.7e+02 Score=27.76 Aligned_cols=75 Identities=13% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Q 016990 228 KLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAI--------SSKIEVSQAHLELL 299 (379)
Q Consensus 228 ~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl--------~~q~~~~~~qLdkL 299 (379)
+..+|.+++++|-+++++.-+....+.+++.+....-=.....-+.++.++...+... ...++..+..+.+.
T Consensus 1 e~~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r 80 (330)
T PF07851_consen 1 ECEEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKER 80 (330)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Q ss_pred hcc
Q 016990 300 KRT 302 (379)
Q Consensus 300 rkT 302 (379)
+..
T Consensus 81 ~~~ 83 (330)
T PF07851_consen 81 RCQ 83 (330)
T ss_pred Hhh
No 498
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=39.81 E-value=1.3e+02 Score=23.98 Aligned_cols=42 Identities=17% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (379)
Q Consensus 218 el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~e 259 (379)
++..|+.-...|....++|..|...+.+++..++.|-..|.+
T Consensus 1 ~L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~e 42 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLE 42 (65)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>PLN03086 PRLI-interacting factor K; Provisional
Probab=39.77 E-value=3.8e+02 Score=29.67 Aligned_cols=90 Identities=19% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Q 016990 228 KLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ-------------- 293 (379)
Q Consensus 228 ~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~-------------- 293 (379)
+|..+-+.+|+|..+-.++.+.-.....++.++-.+--.+.-..+++ ..++++++|....+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 78 (567)
T PLN03086 4 ELRRAREKLEREQRERKQRAKLKLERERKAKEEAAKQREAIEAAQRS-----RRLDAIEAQIKADQQMQESLQAGRGIVF 78 (567)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHcCCCeEE
Q ss_pred --------------------HHHHHHhcccc---ccCceeeee---cCCceeecc
Q 016990 294 --------------------AHLELLKRTNV---LNDAFPIWH---DGEFGTINN 322 (379)
Q Consensus 294 --------------------~qLdkLrkTNV---~nd~F~I~h---dG~fGTINg 322 (379)
.-|++|.+.|+ |-..|.|+. +|+++..|+
T Consensus 79 ~~~~~~~~~~~~GdKI~LPpSaL~~L~~~~~~~~~Pm~F~l~~~~~~~~~~~~~~ 133 (567)
T PLN03086 79 SRIFEAVSFQGNGDKIKLPPSCFTELSDQGAFDKGPLYFRLSVVHQEGSGEMKDT 133 (567)
T ss_pred EEEeeccccCCCCCeEEcCHHHHHHHHhcCCCCCCCeEEEEeccccccccccccc
No 500
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=39.76 E-value=4e+02 Score=26.66 Aligned_cols=95 Identities=18% Similarity=0.241 Sum_probs=0.0
Q ss_pred hchhcccCC-HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 203 EGEARDVLS-EADFLKEKLK----IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIA 277 (379)
Q Consensus 203 ~~~~~~~~~-ee~l~~el~~----Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~ 277 (379)
+.+.-+.++ +|.....+.+ ...-..+..+..+++|.+...|.+|-+.|..|...|....+.+.-+-+++...|..
T Consensus 57 Kr~RL~HLS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~ 136 (292)
T KOG4005|consen 57 KRRRLDHLSWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELEL 136 (292)
T ss_pred HHHhhcccCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016990 278 HQEERDAISSKIEVSQAHLE 297 (379)
Q Consensus 278 ~~eE~~sl~~q~~~~~~qLd 297 (379)
+.+++--++.+-.|...-.+
T Consensus 137 ~~~~l~~~~~~~~~~~~v~e 156 (292)
T KOG4005|consen 137 LRQELAELKQQQQHNTRVIE 156 (292)
T ss_pred HHHHHHhhHHHHHHhhHHHh
Done!