Query 016990
Match_columns 379
No_of_seqs 147 out of 226
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 07:08:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016990.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016990hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ddp_A Beclin-1; ECD, autophag 100.0 4.6E-48 1.6E-52 359.1 7.7 99 277-375 2-101 (210)
2 3vp7_A Vacuolar protein sortin 100.0 1.4E-40 4.8E-45 310.7 7.5 74 302-375 1-75 (220)
3 3q8t_A Beclin-1; autophagy, AT 99.8 4.2E-18 1.4E-22 141.0 15.0 90 213-302 7-96 (96)
4 2p1l_B Beclin 1; apoptosis, au 98.4 5.6E-08 1.9E-12 65.2 1.0 26 143-168 6-31 (31)
5 1c1g_A Tropomyosin; contractIl 96.8 0.16 5.6E-06 44.4 18.6 14 183-196 6-19 (284)
6 2v71_A Nuclear distribution pr 96.4 0.46 1.6E-05 43.5 19.5 27 177-203 18-44 (189)
7 3q8t_A Beclin-1; autophagy, AT 96.2 0.24 8.3E-06 40.5 15.1 80 191-276 5-84 (96)
8 1c1g_A Tropomyosin; contractIl 96.2 0.55 1.9E-05 41.0 19.4 15 182-196 26-40 (284)
9 2dfs_A Myosin-5A; myosin-V, in 95.7 0.091 3.1E-06 58.8 13.7 27 228-254 981-1007(1080)
10 2efr_A General control protein 95.5 1.3 4.4E-05 39.3 20.1 81 221-301 74-154 (155)
11 3na7_A HP0958; flagellar bioge 95.3 0.51 1.7E-05 44.1 15.2 16 268-283 134-149 (256)
12 3na7_A HP0958; flagellar bioge 95.3 1.9 6.4E-05 40.2 19.0 87 215-301 95-186 (256)
13 3oja_B Anopheles plasmodium-re 95.3 0.3 1E-05 49.6 14.6 41 262-302 526-566 (597)
14 3hnw_A Uncharacterized protein 95.1 0.32 1.1E-05 42.2 12.1 68 215-282 66-133 (138)
15 3vkg_A Dynein heavy chain, cyt 94.7 0.75 2.6E-05 56.9 18.2 64 230-293 2013-2076(3245)
16 2v71_A Nuclear distribution pr 94.7 2.6 8.8E-05 38.6 17.7 100 187-289 7-111 (189)
17 3o0z_A RHO-associated protein 93.0 4.9 0.00017 36.1 17.5 55 243-297 95-153 (168)
18 3vkg_A Dynein heavy chain, cyt 92.4 2.4 8.4E-05 52.6 17.0 33 172-204 1899-1931(3245)
19 2efr_A General control protein 91.7 6.8 0.00023 34.7 18.5 32 266-297 98-129 (155)
20 3oja_A Leucine-rich immune mol 91.6 3.7 0.00013 40.7 14.8 42 239-280 429-470 (487)
21 3ghg_A Fibrinogen alpha chain; 91.3 1.5 5.3E-05 45.6 11.8 19 288-306 177-195 (562)
22 2v4h_A NF-kappa-B essential mo 91.3 4 0.00014 34.4 12.3 22 278-299 88-109 (110)
23 3bas_A Myosin heavy chain, str 89.4 7 0.00024 31.1 12.4 67 217-297 14-80 (89)
24 1l8d_A DNA double-strand break 89.2 7.6 0.00026 31.3 12.4 33 265-297 70-102 (112)
25 3s4r_A Vimentin; alpha-helix, 89.1 7.8 0.00027 31.3 12.9 42 260-301 50-91 (93)
26 3oja_A Leucine-rich immune mol 89.1 12 0.00042 37.0 16.1 23 181-203 358-380 (487)
27 1ic2_A Tropomyosin alpha chain 88.1 7.9 0.00027 30.2 12.6 35 267-301 42-76 (81)
28 3hnw_A Uncharacterized protein 87.6 8.7 0.0003 33.1 12.1 61 220-280 64-124 (138)
29 3iox_A AGI/II, PA; alpha helix 87.4 8.8 0.0003 39.7 13.9 93 189-286 8-100 (497)
30 3a7p_A Autophagy protein 16; c 87.4 11 0.00037 33.4 12.7 55 232-286 69-123 (152)
31 1deq_A Fibrinogen (alpha chain 87.0 12 0.00042 37.5 14.3 41 289-336 181-222 (390)
32 3bas_A Myosin heavy chain, str 86.7 11 0.00036 30.1 12.3 36 218-253 22-57 (89)
33 3u1c_A Tropomyosin alpha-1 cha 85.9 13 0.00044 30.3 15.0 67 178-250 4-70 (101)
34 3ghg_A Fibrinogen alpha chain; 85.2 9.8 0.00033 39.8 12.9 46 266-314 131-176 (562)
35 1ic2_A Tropomyosin alpha chain 84.9 11 0.00038 29.3 10.5 65 181-251 4-68 (81)
36 3u1c_A Tropomyosin alpha-1 cha 84.9 14 0.00049 30.0 14.5 69 228-296 27-95 (101)
37 3s9g_A Protein hexim1; cyclin 84.6 12 0.00042 31.0 10.8 50 209-258 29-78 (104)
38 3mq9_A Bone marrow stromal ant 84.0 12 0.00041 36.9 12.8 27 230-256 442-468 (471)
39 3u59_A Tropomyosin beta chain; 83.1 17 0.00057 29.4 14.5 24 178-201 4-27 (101)
40 3ol1_A Vimentin; structural ge 82.9 20 0.00067 30.0 13.4 12 194-205 17-28 (119)
41 3tnu_B Keratin, type II cytosk 82.7 20 0.00069 30.0 12.1 34 218-251 37-70 (129)
42 2v4h_A NF-kappa-B essential mo 81.9 22 0.00075 29.9 12.0 22 282-303 85-106 (110)
43 3tnu_A Keratin, type I cytoske 81.3 18 0.00063 30.4 11.2 26 223-248 44-69 (131)
44 2zqm_A Prefoldin beta subunit 81.0 12 0.00041 30.1 9.6 33 221-253 74-106 (117)
45 3nmd_A CGMP dependent protein 80.9 5.4 0.00019 31.2 7.0 42 214-255 23-64 (72)
46 2jee_A YIIU; FTSZ, septum, coi 78.8 23 0.00079 28.2 10.8 11 228-238 38-48 (81)
47 2ocy_A RAB guanine nucleotide 77.6 37 0.0013 30.0 16.8 30 272-301 114-143 (154)
48 3ajw_A Flagellar FLIJ protein; 77.2 30 0.001 28.6 13.0 54 219-272 76-129 (150)
49 1l8d_A DNA double-strand break 77.2 26 0.0009 28.0 12.8 30 270-299 68-97 (112)
50 3a7p_A Autophagy protein 16; c 77.2 38 0.0013 29.9 12.8 63 218-287 69-131 (152)
51 1ci6_A Transcription factor AT 76.6 9.2 0.00032 28.6 7.0 37 223-259 22-58 (63)
52 2fup_A Hypothetical protein PA 76.6 18 0.00062 30.3 9.8 114 187-303 11-134 (157)
53 3cvf_A Homer-3, homer protein 76.1 25 0.00085 27.9 9.7 39 220-258 16-54 (79)
54 3opc_A Uncharacterized protein 75.4 36 0.0012 28.7 13.6 109 187-301 12-131 (154)
55 3uux_B Mitochondrial division 75.4 30 0.001 32.7 11.6 73 221-293 153-225 (242)
56 3mq7_A Bone marrow stromal ant 75.1 38 0.0013 28.8 11.4 25 232-256 72-96 (121)
57 3viq_B Mating-type switching p 74.5 10 0.00035 30.6 7.1 11 263-273 45-55 (85)
58 3cve_A Homer protein homolog 1 74.5 29 0.00097 27.1 11.1 40 219-258 9-48 (72)
59 1m1j_C Fibrinogen gamma chain; 73.9 50 0.0017 33.3 13.6 14 332-345 205-218 (409)
60 2oto_A M protein; helical coil 73.5 43 0.0015 28.7 14.1 58 180-243 26-83 (155)
61 3fpp_A Macrolide-specific effl 73.2 13 0.00046 34.7 8.9 25 276-300 124-148 (341)
62 1fxk_A Prefoldin; archaeal pro 73.2 18 0.00063 28.6 8.5 33 221-253 69-101 (107)
63 2ve7_A Kinetochore protein HEC 72.4 6.8 0.00023 37.9 6.7 22 231-252 185-206 (315)
64 3mq9_A Bone marrow stromal ant 72.3 77 0.0026 31.1 16.6 30 272-301 442-471 (471)
65 3iv1_A Tumor susceptibility ge 71.9 35 0.0012 27.0 9.6 30 228-257 43-72 (78)
66 2v66_B Nuclear distribution pr 71.9 43 0.0015 28.0 15.7 86 178-268 5-90 (111)
67 2i1j_A Moesin; FERM, coiled-co 71.8 1.9 6.4E-05 45.1 2.8 17 188-204 333-349 (575)
68 4dk0_A Putative MACA; alpha-ha 71.5 22 0.00075 33.5 10.0 28 273-300 122-149 (369)
69 2b5u_A Colicin E3; high resolu 71.0 58 0.002 33.9 13.4 12 300-311 371-382 (551)
70 2p22_A Suppressor protein STP2 70.1 50 0.0017 29.7 11.4 77 218-294 50-136 (174)
71 1wt6_A Myotonin-protein kinase 69.1 20 0.00069 28.6 7.5 38 218-255 32-69 (81)
72 1ik9_A DNA repair protein XRCC 68.6 46 0.0016 30.5 11.1 7 152-158 123-129 (213)
73 3ibp_A Chromosome partition pr 67.9 62 0.0021 31.5 12.2 75 178-252 26-104 (302)
74 2lw1_A ABC transporter ATP-bin 67.6 43 0.0015 26.3 9.6 13 222-234 27-39 (89)
75 3cvf_A Homer-3, homer protein 67.1 45 0.0015 26.4 9.4 32 223-254 5-36 (79)
76 3swk_A Vimentin; cytoskeleton, 66.7 46 0.0016 26.3 11.5 36 267-302 50-85 (86)
77 4etp_A Kinesin-like protein KA 66.5 17 0.0006 36.1 8.4 8 336-343 123-130 (403)
78 3jsv_C NF-kappa-B essential mo 66.3 53 0.0018 26.9 10.3 22 279-300 67-88 (94)
79 3qh9_A Liprin-beta-2; coiled-c 65.7 50 0.0017 26.3 10.4 37 221-257 23-59 (81)
80 3ol1_A Vimentin; structural ge 65.3 58 0.002 27.0 16.5 30 175-204 19-48 (119)
81 3o0z_A RHO-associated protein 65.0 78 0.0027 28.3 18.9 25 180-204 10-34 (168)
82 2w83_C C-JUN-amino-terminal ki 64.9 50 0.0017 26.1 9.8 38 215-252 35-72 (77)
83 4etp_A Kinesin-like protein KA 63.5 22 0.00074 35.5 8.4 13 229-241 15-27 (403)
84 1t2k_D Cyclic-AMP-dependent tr 63.4 22 0.00076 26.1 6.5 34 225-258 23-56 (61)
85 1hjb_A Ccaat/enhancer binding 63.3 23 0.00079 28.4 7.0 36 223-258 35-70 (87)
86 2avr_X Adhesion A; antiparalle 62.1 48 0.0016 28.2 9.1 16 282-297 73-88 (119)
87 3u06_A Protein claret segregat 62.0 21 0.00072 35.7 8.1 31 221-251 7-37 (412)
88 2i1j_A Moesin; FERM, coiled-co 62.0 12 0.00039 39.1 6.4 21 237-257 404-424 (575)
89 2e7s_A RAB guanine nucleotide 62.0 44 0.0015 28.9 9.0 12 289-300 119-130 (135)
90 3hhm_B NISH2 P85alpha; PI3KCA, 61.8 1.1E+02 0.0038 30.2 13.2 61 218-285 199-259 (373)
91 4emc_A Monopolin complex subun 61.0 41 0.0014 30.7 9.0 34 221-254 24-57 (190)
92 3u59_A Tropomyosin beta chain; 60.5 64 0.0022 25.9 15.2 67 228-294 27-93 (101)
93 1m1j_B Fibrinogen beta chain; 60.5 1.5E+02 0.0053 30.3 15.2 27 178-204 88-114 (464)
94 1wle_A Seryl-tRNA synthetase; 60.3 57 0.002 33.5 11.1 37 217-253 70-106 (501)
95 2dq0_A Seryl-tRNA synthetase; 60.0 24 0.00083 35.7 8.2 90 215-313 29-118 (455)
96 4dk0_A Putative MACA; alpha-ha 59.9 26 0.0009 33.0 8.0 32 267-298 123-154 (369)
97 2l5g_B Putative uncharacterize 59.5 23 0.00078 25.1 5.5 29 229-257 7-35 (42)
98 3qne_A Seryl-tRNA synthetase, 58.8 34 0.0012 35.2 9.1 87 216-313 32-120 (485)
99 3mq7_A Bone marrow stromal ant 58.2 86 0.003 26.6 13.5 26 228-253 75-100 (121)
100 3fpp_A Macrolide-specific effl 57.9 53 0.0018 30.6 9.7 31 268-298 123-153 (341)
101 3lss_A Seryl-tRNA synthetase; 57.6 51 0.0017 33.9 10.1 37 216-252 36-72 (484)
102 2wt7_A Proto-oncogene protein 56.8 33 0.0011 25.4 6.5 32 226-257 25-56 (63)
103 2zqm_A Prefoldin beta subunit 55.5 76 0.0026 25.2 10.9 20 222-241 18-37 (117)
104 3qne_A Seryl-tRNA synthetase, 54.9 67 0.0023 33.0 10.5 30 336-367 310-339 (485)
105 2wt7_B Transcription factor MA 54.6 29 0.00097 28.2 6.2 12 230-241 61-72 (90)
106 3s9g_A Protein hexim1; cyclin 54.1 91 0.0031 25.8 9.1 50 216-266 43-92 (104)
107 3nmd_A CGMP dependent protein 54.0 53 0.0018 25.6 7.4 10 292-301 59-68 (72)
108 4e61_A Protein BIM1; EB1-like 53.4 87 0.003 26.1 9.0 41 231-271 11-51 (106)
109 2dq0_A Seryl-tRNA synthetase; 53.3 73 0.0025 32.2 10.4 29 337-367 315-343 (455)
110 1gu4_A CAAT/enhancer binding p 52.6 32 0.0011 27.0 6.0 36 223-258 35-70 (78)
111 1yke_B RNA polymerase II holoe 52.4 1E+02 0.0035 26.8 9.9 29 211-239 86-114 (151)
112 1x79_B RAB GTPase binding effe 52.2 1E+02 0.0036 25.8 11.7 41 256-303 60-100 (112)
113 1go4_E MAD1 (mitotic arrest de 52.1 26 0.0009 28.9 5.6 30 225-254 13-42 (100)
114 2lw1_A ABC transporter ATP-bin 52.0 71 0.0024 25.0 8.1 22 182-203 21-42 (89)
115 1go4_E MAD1 (mitotic arrest de 51.1 69 0.0024 26.4 8.0 36 165-204 5-40 (100)
116 2yy0_A C-MYC-binding protein; 50.5 26 0.00088 25.6 4.8 27 221-247 23-49 (53)
117 2eqb_B RAB guanine nucleotide 50.5 1E+02 0.0035 25.2 12.5 6 264-269 63-68 (97)
118 2aze_B Transcription factor E2 50.4 25 0.00085 29.0 5.3 33 226-258 8-40 (106)
119 1ci6_A Transcription factor AT 50.4 38 0.0013 25.2 5.9 28 217-244 30-57 (63)
120 2pms_C Pneumococcal surface pr 50.1 1.2E+02 0.0041 25.9 10.0 106 180-299 10-122 (125)
121 3etw_A Adhesin A; antiparallel 49.7 1E+02 0.0034 26.1 9.1 7 217-223 16-22 (119)
122 1ykh_B RNA polymerase II holoe 49.7 1.2E+02 0.0041 25.7 10.4 29 211-239 86-114 (132)
123 3ter_A Mammalian stromal inter 49.6 99 0.0034 26.8 9.1 44 271-314 43-87 (136)
124 1ses_A Seryl-tRNA synthetase; 49.6 1E+02 0.0035 30.7 10.7 71 174-250 27-97 (421)
125 1jnm_A Proto-oncogene C-JUN; B 49.1 22 0.00074 26.3 4.4 33 225-257 23-55 (62)
126 4dzn_A Coiled-coil peptide CC- 49.0 37 0.0013 22.3 4.8 19 229-247 7-25 (33)
127 4h22_A Leucine-rich repeat fli 48.5 1.2E+02 0.004 25.2 9.4 23 228-250 34-56 (103)
128 1fxk_C Protein (prefoldin); ar 48.4 1.1E+02 0.0038 25.0 10.5 81 176-256 15-127 (133)
129 3thf_A Protein shroom; coiled- 47.3 1.7E+02 0.0057 26.7 14.6 41 265-305 147-187 (190)
130 3etw_A Adhesin A; antiparallel 47.1 1.3E+02 0.0045 25.4 11.9 11 294-304 102-112 (119)
131 3u06_A Protein claret segregat 45.0 59 0.002 32.5 8.1 29 227-255 6-34 (412)
132 3qh9_A Liprin-beta-2; coiled-c 44.8 1.2E+02 0.004 24.2 8.8 10 186-195 5-14 (81)
133 1lwu_C Fibrinogen gamma chain; 44.5 68 0.0023 31.3 8.2 14 332-345 127-140 (323)
134 4dzn_A Coiled-coil peptide CC- 44.3 49 0.0017 21.7 4.8 27 232-258 3-29 (33)
135 1gmj_A ATPase inhibitor; coile 44.0 1.1E+02 0.0037 24.5 7.9 15 229-243 56-70 (84)
136 3tnu_A Keratin, type I cytoske 43.9 1.4E+02 0.0048 24.9 13.1 12 229-240 43-54 (131)
137 2f1m_A Acriflavine resistance 43.7 74 0.0025 28.6 8.0 23 275-297 107-129 (277)
138 1fmh_A General control protein 43.7 37 0.0013 22.3 4.2 6 237-242 7-12 (33)
139 1hjb_A Ccaat/enhancer binding 43.7 46 0.0016 26.6 5.8 34 215-248 41-74 (87)
140 1a93_B MAX protein, coiled coi 43.5 36 0.0012 23.0 4.2 25 226-250 9-33 (34)
141 3iox_A AGI/II, PA; alpha helix 43.0 3E+02 0.01 28.5 16.3 71 231-301 34-108 (497)
142 3ljm_A Coil Ser L9C; de novo d 42.9 41 0.0014 21.8 4.3 20 235-254 5-24 (31)
143 3etv_A Protein transport prote 42.9 77 0.0026 31.5 8.3 87 181-269 14-102 (355)
144 1f5n_A Interferon-induced guan 42.5 3.2E+02 0.011 28.5 20.4 17 286-302 566-582 (592)
145 1g6u_A Domain swapped dimer; d 42.4 43 0.0015 23.6 4.7 23 226-248 22-44 (48)
146 1t6f_A Geminin; coiled-coil, c 41.6 48 0.0016 22.7 4.6 24 234-257 10-33 (37)
147 3jsv_C NF-kappa-B essential mo 41.0 1.5E+02 0.005 24.2 11.0 18 285-302 66-83 (94)
148 1ses_A Seryl-tRNA synthetase; 41.0 75 0.0026 31.7 8.2 33 217-249 28-60 (421)
149 1deq_A Fibrinogen (alpha chain 40.0 3E+02 0.01 27.6 12.3 33 344-376 184-219 (390)
150 3i00_A HIP-I, huntingtin-inter 40.0 1.7E+02 0.0057 24.6 9.7 20 175-194 14-33 (120)
151 1gd2_E Transcription factor PA 39.9 54 0.0018 25.2 5.4 24 228-251 40-63 (70)
152 2yy0_A C-MYC-binding protein; 39.6 48 0.0016 24.1 4.8 26 226-251 21-46 (53)
153 1m1j_C Fibrinogen gamma chain; 39.3 3.1E+02 0.011 27.5 14.2 30 272-301 104-133 (409)
154 3qfi_A Transcriptional regulat 39.1 11 0.00039 36.3 1.7 41 335-375 76-119 (301)
155 1t2k_D Cyclic-AMP-dependent tr 38.4 86 0.0029 22.8 6.2 21 222-242 34-54 (61)
156 1uix_A RHO-associated kinase; 37.5 1.4E+02 0.0049 23.1 10.6 32 231-262 4-35 (71)
157 2oto_A M protein; helical coil 37.5 1.9E+02 0.0065 24.6 18.9 22 181-202 34-55 (155)
158 1f5n_A Interferon-induced guan 37.1 3.8E+02 0.013 27.9 19.3 16 279-294 566-581 (592)
159 1nkp_B MAX protein, MYC proto- 36.1 40 0.0014 25.9 4.2 28 221-248 51-78 (83)
160 1nlw_A MAD protein, MAX dimeri 36.1 46 0.0016 25.9 4.6 28 221-248 51-78 (80)
161 2dq3_A Seryl-tRNA synthetase; 35.8 24 0.00081 35.3 3.6 90 214-312 27-116 (425)
162 3cve_A Homer protein homolog 1 35.5 1.5E+02 0.0053 22.9 11.1 26 229-254 5-30 (72)
163 1wle_A Seryl-tRNA synthetase; 35.5 2.9E+02 0.01 28.2 11.7 24 219-242 79-102 (501)
164 2wt7_A Proto-oncogene protein 35.4 1.1E+02 0.0037 22.5 6.4 19 222-240 35-53 (63)
165 3tq7_B Microtubule-associated 35.1 46 0.0016 26.5 4.4 26 178-203 10-35 (82)
166 3rrk_A V-type ATPase 116 kDa s 34.7 1.4E+02 0.0048 28.2 8.7 47 221-269 96-143 (357)
167 1nkp_A C-MYC, MYC proto-oncoge 34.6 56 0.0019 25.8 4.9 31 220-250 55-85 (88)
168 4h22_A Leucine-rich repeat fli 34.4 2E+02 0.0068 23.8 10.8 27 226-252 25-51 (103)
169 2b9c_A Striated-muscle alpha t 33.8 2.3E+02 0.0079 24.4 14.5 23 181-203 22-44 (147)
170 2xnx_M M protein, M1-BC1; cell 33.4 2.5E+02 0.0084 24.6 10.2 17 292-308 99-115 (146)
171 3ra3_B P2F; coiled coil domain 32.2 38 0.0013 21.5 2.7 10 228-237 11-20 (28)
172 4e61_A Protein BIM1; EB1-like 32.1 51 0.0018 27.5 4.4 26 178-203 27-52 (106)
173 2aze_B Transcription factor E2 31.5 94 0.0032 25.5 5.9 21 299-319 56-76 (106)
174 1fxk_A Prefoldin; archaeal pro 31.5 1.8E+02 0.0063 22.6 11.7 19 229-247 70-88 (107)
175 4b4t_K 26S protease regulatory 31.5 76 0.0026 31.8 6.4 7 332-338 168-174 (428)
176 2dq3_A Seryl-tRNA synthetase; 31.2 61 0.0021 32.4 5.7 27 337-365 294-320 (425)
177 3okz_A Putative uncharacterize 31.1 13 0.00044 35.9 0.7 41 335-375 82-125 (306)
178 1m1j_B Fibrinogen beta chain; 31.1 4.4E+02 0.015 26.9 15.0 14 332-345 268-281 (464)
179 3i00_A HIP-I, huntingtin-inter 31.0 2.4E+02 0.0081 23.7 11.8 15 222-236 20-34 (120)
180 2wt7_B Transcription factor MA 31.0 2.1E+02 0.0071 23.0 9.4 27 264-290 60-86 (90)
181 2v0o_A FCHO2, FCH domain only 30.8 2.9E+02 0.0098 24.6 18.0 16 320-335 257-272 (276)
182 3okq_A BUD site selection prot 30.6 2.7E+02 0.0092 24.2 14.5 57 219-275 56-112 (141)
183 1ik9_A DNA repair protein XRCC 30.1 3.2E+02 0.011 24.9 12.5 20 263-282 179-198 (213)
184 2ve7_A Kinetochore protein HEC 29.9 55 0.0019 31.4 4.9 7 194-200 154-160 (315)
185 3lss_A Seryl-tRNA synthetase; 29.8 2.4E+02 0.0082 28.9 9.9 25 226-250 113-137 (484)
186 3bbp_D GRIP and coiled-coil do 29.8 34 0.0012 26.6 2.7 36 226-261 31-66 (71)
187 2fic_A Bridging integrator 1; 29.3 3E+02 0.01 24.4 13.8 7 176-182 112-118 (251)
188 1zxa_A CGMP-dependent protein 29.1 98 0.0034 23.7 5.2 25 230-254 24-48 (67)
189 1s1c_X RHO-associated, coiled- 29.0 2E+02 0.0069 22.3 9.9 33 229-261 4-36 (71)
190 2v66_B Nuclear distribution pr 28.8 2.5E+02 0.0087 23.3 13.2 47 227-273 38-84 (111)
191 3a2a_A Voltage-gated hydrogen 28.6 1.8E+02 0.0063 21.6 6.7 34 219-252 13-46 (58)
192 3rrk_A V-type ATPase 116 kDa s 28.3 1.1E+02 0.0039 28.8 6.9 34 213-246 95-128 (357)
193 2dgc_A Protein (GCN4); basic d 28.3 89 0.003 23.3 4.8 27 226-252 32-58 (63)
194 3m9b_A Proteasome-associated A 27.8 84 0.0029 29.8 5.6 8 233-240 63-70 (251)
195 4ani_A Protein GRPE; chaperone 27.7 2E+02 0.0068 26.4 8.1 31 221-251 63-93 (213)
196 2f1m_A Acriflavine resistance 27.5 2.1E+02 0.0072 25.6 8.2 28 274-301 99-126 (277)
197 2xnx_M M protein, M1-BC1; cell 27.4 3.1E+02 0.011 23.9 8.7 16 221-236 37-52 (146)
198 2nqw_A CBS domain protein; PFA 27.0 7.2 0.00025 30.6 -1.6 16 315-330 44-62 (93)
199 3gp4_A Transcriptional regulat 27.0 2.6E+02 0.0089 23.4 8.2 27 224-250 88-114 (142)
200 2o3g_A Putative protein; APC85 26.9 12 0.00042 29.2 -0.2 26 305-330 30-61 (92)
201 2ve7_C Kinetochore protein NUF 26.9 9.9 0.00034 35.7 -0.9 62 213-274 144-205 (250)
202 1zhc_A Hypothetical protein HP 26.6 1.2E+02 0.0041 23.3 5.4 41 221-262 21-61 (76)
203 2p2u_A HOST-nuclease inhibitor 26.5 3.2E+02 0.011 23.8 13.3 28 291-327 71-99 (171)
204 2p22_A Suppressor protein STP2 26.5 3.4E+02 0.012 24.2 9.1 42 260-301 50-91 (174)
205 1lwu_C Fibrinogen gamma chain; 26.5 1.2E+02 0.0043 29.4 6.8 6 362-367 90-95 (323)
206 3ga8_A HTH-type transcriptiona 26.1 10 0.00036 28.9 -0.8 21 9-30 25-45 (78)
207 2zdi_C Prefoldin subunit alpha 26.0 2.9E+02 0.01 23.1 8.6 36 220-255 101-136 (151)
208 3plt_A Sphingolipid long chain 25.9 4.1E+02 0.014 24.8 16.7 74 178-254 75-154 (234)
209 3gp4_A Transcriptional regulat 25.9 2.9E+02 0.0099 23.1 10.1 15 237-251 87-101 (142)
210 1x79_B RAB GTPase binding effe 25.8 2.9E+02 0.01 23.0 11.9 23 178-200 15-37 (112)
211 3viq_B Mating-type switching p 25.6 68 0.0023 25.7 3.9 27 228-254 5-31 (85)
212 3pe5_A Uncharacterized protein 25.5 34 0.0012 34.4 2.7 41 335-375 161-204 (403)
213 2eqb_B RAB guanine nucleotide 25.4 2.8E+02 0.0095 22.7 14.0 25 179-203 8-32 (97)
214 4de9_A Putative transcriptiona 25.0 19 0.00065 34.3 0.7 42 334-375 84-128 (286)
215 1gmj_A ATPase inhibitor; coile 24.7 2.7E+02 0.0092 22.2 9.3 29 229-257 49-77 (84)
216 1lrz_A FEMA, factor essential 24.4 2.2E+02 0.0074 27.7 8.2 63 278-341 286-353 (426)
217 1gu4_A CAAT/enhancer binding p 24.4 1.5E+02 0.0052 23.1 5.7 29 216-244 42-70 (78)
218 2l5g_B Putative uncharacterize 24.3 1.7E+02 0.006 20.5 5.3 22 230-251 15-36 (42)
219 3haj_A Human pacsin2 F-BAR; pa 24.3 5.3E+02 0.018 25.6 15.6 22 320-342 287-308 (486)
220 3tkl_B LIDA protein, substrate 24.2 1.5E+02 0.0052 27.8 6.5 42 178-219 44-87 (267)
221 1t3j_A Mitofusin 1; coiled coi 23.8 3E+02 0.01 22.4 8.2 14 228-241 51-64 (96)
222 2gd5_A Charged multivesicular 23.8 3.6E+02 0.012 23.4 13.3 40 213-252 10-49 (179)
223 2ocy_A RAB guanine nucleotide 23.6 3.7E+02 0.013 23.5 16.9 22 270-291 119-140 (154)
224 1j1d_C Troponin I, TNI; THIN f 23.3 3.5E+02 0.012 23.1 11.3 20 178-197 28-47 (133)
225 3l4q_C Phosphatidylinositol 3- 23.3 4E+02 0.014 23.7 15.1 51 227-284 99-149 (170)
226 2gd5_A Charged multivesicular 23.3 3.6E+02 0.012 23.3 11.1 25 214-238 25-49 (179)
227 3m91_A Proteasome-associated A 23.0 2.2E+02 0.0075 20.6 7.2 31 228-258 13-43 (51)
228 1lrz_A FEMA, factor essential 22.9 1.5E+02 0.0053 28.8 6.8 9 194-202 224-232 (426)
229 1fzc_C Fibrin; blood coagulati 22.8 47 0.0016 32.4 3.0 14 332-345 118-131 (319)
230 4dci_A Uncharacterized protein 22.7 3.8E+02 0.013 23.3 11.1 23 229-251 34-56 (150)
231 2dgc_A Protein (GCN4); basic d 22.6 1.4E+02 0.005 22.1 5.0 26 230-255 29-54 (63)
232 3caz_A BAR protein; thermo-aci 22.3 2.4E+02 0.0083 26.1 7.4 13 291-303 165-177 (294)
233 2k48_A Nucleoprotein; viral pr 22.3 3.4E+02 0.012 22.6 9.0 16 229-244 40-55 (107)
234 4akg_A Glutathione S-transfera 21.8 4.2E+02 0.014 32.9 11.3 62 180-241 2143-2212(2695)
235 4etp_B Spindle POLE BODY-assoc 21.6 2.5E+02 0.0085 27.7 7.8 36 236-274 8-43 (333)
236 1uii_A Geminin; human, DNA rep 21.5 3.1E+02 0.011 21.8 7.0 54 196-251 27-80 (83)
237 2ykt_A Brain-specific angiogen 20.9 5E+02 0.017 24.0 15.1 108 166-274 27-136 (253)
238 3twe_A Alpha4H; unknown functi 20.9 1.4E+02 0.0048 18.8 3.8 7 216-222 7-13 (27)
239 2nsc_A Trigger factor, TF; cha 20.8 28 0.00097 28.2 0.8 22 319-345 40-61 (109)
240 3tnf_B LIDA, RAS-related prote 20.4 2.8E+02 0.0096 27.1 7.7 47 176-222 25-73 (384)
241 3vp9_A General transcriptional 20.4 95 0.0032 25.2 3.8 17 179-195 17-33 (92)
242 2p4v_A Transcription elongatio 20.3 1.9E+02 0.0066 24.8 6.1 27 226-252 11-38 (158)
243 2qyw_A Vesicle transport throu 20.2 3.3E+02 0.011 21.7 10.7 26 232-257 50-75 (102)
244 2xv5_A Lamin-A/C; structural p 20.2 3E+02 0.01 21.1 8.0 21 227-247 8-28 (74)
245 3ghg_C Fibrinogen gamma chain; 20.1 6.7E+02 0.023 25.2 13.7 14 332-345 205-218 (411)
No 1
>4ddp_A Beclin-1; ECD, autophagy, membrane binding, membrane protein; 1.55A {Homo sapiens}
Probab=100.00 E-value=4.6e-48 Score=359.07 Aligned_cols=99 Identities=46% Similarity=0.861 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccCceeeeecCCceeecccccCCCCCCCCChhhHHHHHHHHHHHHHHHHhhc
Q 016990 277 AHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYF 356 (379)
Q Consensus 277 ~~~eE~~sl~~q~~~~~~qLdkLrkTNV~nd~F~I~hdG~fGTINgfRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~kl 356 (379)
++++|++|+++||++++.|||+|+||||||++|||||||+|||||||||||+|++||+|+||||||||+||||++||+++
T Consensus 2 ~~~~e~~sl~~q~~~~~~~L~~L~~tNv~n~~F~I~hdG~fgtINglRLGrlp~~~V~W~EINAAwGq~~LLL~tla~~l 81 (210)
T 4ddp_A 2 ELDDELKSVENQMRYAQTQLDKLKKTNVFNATFHIWHSGQFGTINNFRLGRLPSVPVEWNEINAAWGQTVLLLHALANKM 81 (210)
T ss_dssp ------CCHHHHHHHHHHHHHTC----CCSSCCCEEEETTEEEETTEECCCBTTBCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcccccceeEEEecCCceeEcccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcc-eeEEeccceeeeec
Q 016990 357 RPKFP-YPFFTSLCFLVIVD 375 (379)
Q Consensus 357 ~~~Fq-YrLvp~gs~~~~~~ 375 (379)
+++|+ |||+||||||+|++
T Consensus 82 ~~~f~~y~L~P~GS~S~I~~ 101 (210)
T 4ddp_A 82 GLKFQRYRLVPYGNHSYLES 101 (210)
T ss_dssp TCCCSSEEEECCGGGCEEEE
T ss_pred CCCccceeEEecCCcceeeE
Confidence 99998 99999999999976
No 2
>3vp7_A Vacuolar protein sorting-associated protein 30; targeting, PI3-kinase complex I, PRE-autophagosomal structur protein transport; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-40 Score=310.66 Aligned_cols=74 Identities=41% Similarity=0.632 Sum_probs=73.1
Q ss_pred cccccCceeeeecCCceeecccccCCCCCCCCChhhHHHHHHHHHHHHHHHHhhcCCCcc-eeEEeccceeeeec
Q 016990 302 TNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFP-YPFFTSLCFLVIVD 375 (379)
Q Consensus 302 TNV~nd~F~I~hdG~fGTINgfRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~kl~~~Fq-YrLvp~gs~~~~~~ 375 (379)
||||||+|||||||+|||||||||||+|++||+|+||||||||+||||++||+|++++|+ |||+||||||+|++
T Consensus 1 tNV~Nd~F~I~hdg~fgTINglRLGrl~~~~V~W~EINAAwGq~~LLL~tla~kl~~~f~~Y~L~PmGS~S~I~~ 75 (220)
T 3vp7_A 1 INIFNATFKISHSGPFATINGLRLGSIPESVVPWKEINAALGQLILLLATINKNLKINLVDYELQPMGSFSKIKK 75 (220)
T ss_dssp CCTTTTTCCEEEETTEEEETTEEECCBTTBCCCHHHHHHHHHHHHHHHHHHHHHTTCCCSSEEEECCGGGCEEEE
T ss_pred CccccceeEEeecCCceeEcccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcccceEEeCCCcceEee
Confidence 799999999999999999999999999999999999999999999999999999999998 99999999999987
No 3
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=99.78 E-value=4.2e-18 Score=140.96 Aligned_cols=90 Identities=22% Similarity=0.429 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVS 292 (379)
Q Consensus 213 e~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~ 292 (379)
+.+.+++..|+.+|.+|.++|++||++++.++.+|..++.+..+++.+|.+||++||.|++++++|+++++|+++||.|+
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~ 86 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYA 86 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcc
Q 016990 293 QAHLELLKRT 302 (379)
Q Consensus 293 ~~qLdkLrkT 302 (379)
+.||++|+|.
T Consensus 87 ~~qLdkL~K~ 96 (96)
T 3q8t_A 87 QMQLDKLKKK 96 (96)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHhhcC
Confidence 9999999973
No 4
>2p1l_B Beclin 1; apoptosis, autophagy, BH3 domain, BCL; 2.50A {Homo sapiens} PDB: 3dvu_C 2pon_A
Probab=98.40 E-value=5.6e-08 Score=65.16 Aligned_cols=26 Identities=27% Similarity=0.517 Sum_probs=18.0
Q ss_pred CCccchHHHHHHHHHhhcCCCCcCCc
Q 016990 143 SGFHSTITVLKRAFEIATSQTQVEQP 168 (379)
Q Consensus 143 ~~lss~i~~l~~lFdIlSs~s~IDhP 168 (379)
.+||++++++++||||||++++||||
T Consensus 6 ~~ls~~~~~~~~lFdILS~~sdIDhP 31 (31)
T 2p1l_B 6 ENLSRRLKVTGDLFDIMSGQTDVDHP 31 (31)
T ss_dssp HHHHHHHHHHHHHHHHTTC-------
T ss_pred ccHHHHHHHHHHHHHHHhCCCcCCCC
Confidence 56999999999999999999999999
No 5
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=96.76 E-value=0.16 Score=44.43 Aligned_cols=14 Identities=21% Similarity=0.109 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 016990 183 KEVDDVTRDIEAYE 196 (379)
Q Consensus 183 ~qle~~~~E~d~Y~ 196 (379)
+.+..+..+.+.+.
T Consensus 6 ~~~~~l~~~~~~~~ 19 (284)
T 1c1g_A 6 KKMQMLKLDKENAL 19 (284)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHH
Confidence 33333333333333
No 6
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.40 E-value=0.46 Score=43.47 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016990 177 LSDKLDKEVDDVTRDIEAYEACLQRLE 203 (379)
Q Consensus 177 Lle~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (379)
+...+..++.+++.|-+.|+..=+.|+
T Consensus 18 ~~~~~~q~~~~le~El~EFqesSrELE 44 (189)
T 2v71_A 18 LSMKYKQSFQEARDELVEFQEGSRELE 44 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777776665554
No 7
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=96.23 E-value=0.24 Score=40.47 Aligned_cols=80 Identities=18% Similarity=0.264 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 191 DIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNN 270 (379)
Q Consensus 191 E~d~Y~~fL~~L~~~~~~~~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~ 270 (379)
++.+-..-|+.|+.+ +..+..++..|+.+...+..+|..++.+...++.+-.....+...+.-.--.|-.+..+
T Consensus 5 ~~~~l~~eL~~l~~e------E~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~S 78 (96)
T 3q8t_A 5 DSEQLQRELKELALE------EERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKS 78 (96)
T ss_dssp HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666542 46678899999999999999999999999998888777777766555443334444444
Q ss_pred HHHHHH
Q 016990 271 FQFQLI 276 (379)
Q Consensus 271 ~q~qL~ 276 (379)
+..++.
T Consensus 79 l~~q~~ 84 (96)
T 3q8t_A 79 VENQMR 84 (96)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 443333
No 8
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=96.22 E-value=0.55 Score=40.98 Aligned_cols=15 Identities=7% Similarity=0.129 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 016990 182 DKEVDDVTRDIEAYE 196 (379)
Q Consensus 182 d~qle~~~~E~d~Y~ 196 (379)
..++..+..+...+.
T Consensus 26 ~~~l~~l~~~~~~~~ 40 (284)
T 1c1g_A 26 EADKKAAEDRSKQLE 40 (284)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 9
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.72 E-value=0.091 Score=58.83 Aligned_cols=27 Identities=11% Similarity=0.190 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 228 KLEAAIEETEKQNAEVNAELKELELKS 254 (379)
Q Consensus 228 ~L~~eLeelEkE~~~l~~el~~le~e~ 254 (379)
.++.++..|+++.+++++++.++..|.
T Consensus 981 ~~~~~v~~L~~e~~~l~~~~~~~~ke~ 1007 (1080)
T 2dfs_A 981 NATNRVLSLQEEIAKLRKELHQTQTEK 1007 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444333
No 10
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=95.46 E-value=1.3 Score=39.34 Aligned_cols=81 Identities=16% Similarity=0.170 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016990 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (379)
Q Consensus 221 ~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLr 300 (379)
.++.+.+.|...|++.|.--+........|+.+..++++.=...=..|-..+..|-....++.++.+.+.+..+.+.+|+
T Consensus 74 ~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~~ 153 (155)
T 2efr_A 74 KYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARLK 153 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 34455555555555555544444444555555444443333323334445556666666777777788888888888887
Q ss_pred c
Q 016990 301 R 301 (379)
Q Consensus 301 k 301 (379)
+
T Consensus 154 ~ 154 (155)
T 2efr_A 154 K 154 (155)
T ss_dssp T
T ss_pred c
Confidence 6
No 11
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.27 E-value=0.51 Score=44.09 Aligned_cols=16 Identities=0% Similarity=-0.043 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 016990 268 FNNFQFQLIAHQEERD 283 (379)
Q Consensus 268 ~n~~q~qL~~~~eE~~ 283 (379)
+..++-++.....+++
T Consensus 134 l~~~~~~l~~~~~~~~ 149 (256)
T 3na7_A 134 MLELEKLALELESLVE 149 (256)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333434433333333
No 12
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.25 E-value=1.9 Score=40.19 Aligned_cols=87 Identities=16% Similarity=0.125 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK----RFKELEERYWQEFNNFQFQLIAHQEERDAISSKIE 290 (379)
Q Consensus 215 l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~----~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~ 290 (379)
+.+|+..++.+...++.++.++..+.+.+.+++..++.+.. .++....++=.....++.++..+..++..+...+.
T Consensus 95 L~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~~~i~ 174 (256)
T 3na7_A 95 LNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTE 174 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33444444444444444444444444444444333333222 12222223333344444444444444444444332
Q ss_pred -HHHHHHHHHhc
Q 016990 291 -VSQAHLELLKR 301 (379)
Q Consensus 291 -~~~~qLdkLrk 301 (379)
-....-+++++
T Consensus 175 ~~lL~~Yerir~ 186 (256)
T 3na7_A 175 PKIYSFYERIRR 186 (256)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 33355677775
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.25 E-value=0.3 Score=49.63 Aligned_cols=41 Identities=15% Similarity=0.121 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 016990 262 ERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 302 (379)
Q Consensus 262 e~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrkT 302 (379)
+++-++.++.+.++..+++|+..++.+++..+.++..|++.
T Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e 566 (597)
T 3oja_B 526 QARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQE 566 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHH
Confidence 34444444455555555566666666666555555555443
No 14
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=95.06 E-value=0.32 Score=42.25 Aligned_cols=68 Identities=18% Similarity=0.246 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEER 282 (379)
Q Consensus 215 l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~ 282 (379)
+..|+.++..+-..|.++++++++|...+..++..++.+.+.+.++-+++-++.+.++.+...++.++
T Consensus 66 iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777788888888888888888888888888888887777777777777777777766665444
No 15
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.71 E-value=0.75 Score=56.93 Aligned_cols=64 Identities=14% Similarity=0.211 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 230 EAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 293 (379)
Q Consensus 230 ~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~ 293 (379)
+++|.++|++.++..+++.+++.+..++++.=+++-.+|.....+...++++.+..+.+++.|.
T Consensus 2013 r~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~ 2076 (3245)
T 3vkg_A 2013 REEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSI 2076 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666665555555544444555555555555555555555555554444
No 16
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=94.66 E-value=2.6 Score=38.56 Aligned_cols=100 Identities=10% Similarity=0.232 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHhchhccc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Q 016990 187 DVTRDIEAYEACLQRLEGEARDV-LSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF----KELE 261 (379)
Q Consensus 187 ~~~~E~d~Y~~fL~~L~~~~~~~-~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L----~eeE 261 (379)
..+.|+..|..........-... ..-++|...-..| |..|+++|+.+|+....+......+..+...+ +..-
T Consensus 7 s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrEL---E~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~ 83 (189)
T 2v71_A 7 SLKEETAYWKELSMKYKQSFQEARDELVEFQEGSREL---EAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQY 83 (189)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777766544443221100 0122333322223 23345555555555555555554444443322 2333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 262 ERYWQEFNNFQFQLIAHQEERDAISSKI 289 (379)
Q Consensus 262 e~~w~e~n~~q~qL~~~~eE~~sl~~q~ 289 (379)
.+.-+..|.++.++..+....+.+..++
T Consensus 84 ~e~~~~~~~Lq~el~~l~~~~~~l~~~i 111 (189)
T 2v71_A 84 AQSYKQVSVLEDDLSQTRAIKEQLHKYV 111 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666666666655544
No 17
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=92.99 E-value=4.9 Score=36.12 Aligned_cols=55 Identities=24% Similarity=0.239 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 016990 243 VNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAIS----SKIEVSQAHLE 297 (379)
Q Consensus 243 l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~----~q~~~~~~qLd 297 (379)
+...+..|+.+.+++..-+.+.--+...++-.+..++.+..+++ -++..++..++
T Consensus 95 lq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~e 153 (168)
T 3o0z_A 95 LQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLE 153 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 34445556666666666666666777777777777777777766 44444444443
No 18
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=92.39 E-value=2.4 Score=52.57 Aligned_cols=33 Identities=9% Similarity=0.194 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016990 172 ECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEG 204 (379)
Q Consensus 172 ECtd~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~ 204 (379)
|-...-..-|.++..++...++.|..=|+||..
T Consensus 1899 eli~~y~~ll~~K~~el~~~~~rl~~GL~KL~e 1931 (3245)
T 3vkg_A 1899 DFINQVVLLINEKRDQLEEEQLHLNIGLKKLRD 1931 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556667777777778888877777754
No 19
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=91.66 E-value=6.8 Score=34.68 Aligned_cols=32 Identities=9% Similarity=0.092 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 266 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 297 (379)
Q Consensus 266 ~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLd 297 (379)
+....++..+-.+++++.+-+.+|...+..|+
T Consensus 98 Rsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd 129 (155)
T 2efr_A 98 RSVTKLEKSIDDLEDELYAQKLKYKAISEEMK 129 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666666665555555
No 20
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.56 E-value=3.7 Score=40.75 Aligned_cols=42 Identities=10% Similarity=0.064 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 239 QNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQE 280 (379)
Q Consensus 239 E~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~e 280 (379)
++.+..++.+....+.+++.++.++.-++..++..++.+...
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (487)
T 3oja_A 429 VQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANA 470 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhccc
Confidence 333333333333333344444333333444444444443333
No 21
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=91.33 E-value=1.5 Score=45.64 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhcccccc
Q 016990 288 KIEVSQAHLELLKRTNVLN 306 (379)
Q Consensus 288 q~~~~~~qLdkLrkTNV~n 306 (379)
-|+..|.||+.+-.+|+++
T Consensus 177 sY~~~QKQLeQv~a~dL~p 195 (562)
T 3ghg_A 177 DYEDQQKQLEQVIAKDLLP 195 (562)
T ss_dssp HHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHhhcccCC
Confidence 3777888999999999988
No 22
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=91.29 E-value=4 Score=34.38 Aligned_cols=22 Identities=18% Similarity=0.296 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016990 278 HQEERDAISSKIEVSQAHLELL 299 (379)
Q Consensus 278 ~~eE~~sl~~q~~~~~~qLdkL 299 (379)
...+.+.+..++.+.+.++.+|
T Consensus 88 l~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 88 LVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhHHHHHHHHHHHHHHHHHhc
Confidence 4556666666777766666554
No 23
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=89.42 E-value=7 Score=31.15 Aligned_cols=67 Identities=13% Similarity=0.112 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHL 296 (379)
Q Consensus 217 ~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qL 296 (379)
+++..++.+...+...++..++.+.++......+.. +.|+++.++.+.++.+..+.++-.-...+|
T Consensus 14 eEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~--------------ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l 79 (89)
T 3bas_A 14 EEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLE--------------QKNDLFGSMKQLEDKVEELLSKNYHLENEV 79 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555544444444444443333 344444445566666655544444333333
Q ss_pred H
Q 016990 297 E 297 (379)
Q Consensus 297 d 297 (379)
.
T Consensus 80 ~ 80 (89)
T 3bas_A 80 A 80 (89)
T ss_dssp H
T ss_pred H
Confidence 3
No 24
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=89.21 E-value=7.6 Score=31.30 Aligned_cols=33 Identities=9% Similarity=0.192 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 265 WQEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 297 (379)
Q Consensus 265 w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLd 297 (379)
..+...++.++..+.++...++..+.....++.
T Consensus 70 ~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 70 HLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444443333
No 25
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=89.09 E-value=7.8 Score=31.27 Aligned_cols=42 Identities=12% Similarity=0.200 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016990 260 LEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (379)
Q Consensus 260 eEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrk 301 (379)
...-|..+.+.++.++.....++..+..+++..+..++.+++
T Consensus 50 ~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 50 LGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444588888889999999999998888888888888888874
No 26
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=89.06 E-value=12 Score=37.01 Aligned_cols=23 Identities=4% Similarity=-0.025 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 016990 181 LDKEVDDVTRDIEAYEACLQRLE 203 (379)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~~L~ 203 (379)
++++-...+.+.+.+...+.+++
T Consensus 358 ~~~~~~~l~~~~~~le~~~~~~~ 380 (487)
T 3oja_A 358 RKQAKITLEQKKKALDEQVSNGR 380 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34433444555555554444443
No 27
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=88.12 E-value=7.9 Score=30.15 Aligned_cols=35 Identities=29% Similarity=0.374 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016990 267 EFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (379)
Q Consensus 267 e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrk 301 (379)
++..+++.+..++++++.++.++..++..|+.-.+
T Consensus 42 ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek 76 (81)
T 1ic2_A 42 ELVALQKKLKGTEDELDKYSESLKDAQEKLELADK 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666677777777777777777777765544
No 28
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=87.58 E-value=8.7 Score=33.13 Aligned_cols=61 Identities=13% Similarity=0.105 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQE 280 (379)
Q Consensus 220 ~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~e 280 (379)
..+-.|.-++..+.+.++.+.+++..|+.+++.+...+....+..-++...++.+..+++.
T Consensus 64 LNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~ 124 (138)
T 3hnw_A 64 LNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQK 124 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666777777777777777777766666555544444344444444433333333
No 29
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=87.44 E-value=8.8 Score=39.73 Aligned_cols=93 Identities=19% Similarity=0.334 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 189 TRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEF 268 (379)
Q Consensus 189 ~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~ 268 (379)
+.+..+|+.-|.++++...+. .++..+.+.+...+-.+..+|.+.+++..+...+.-+ ++.++.++.-..|-+++
T Consensus 8 q~~la~yq~elarvqkana~a--ka~Ye~~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye---~~l~kY~~dlakY~~~~ 82 (497)
T 3iox_A 8 QAKLTAYQTELARVQKANADA--KAAYEAAVAANNAANAALTAENTAIKKRNADAKADYE---AKLAKYQADLAKYQKDL 82 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 456667888888887643221 2333344444445555555555555555544333322 22233333334555666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016990 269 NNFQFQLIAHQEERDAIS 286 (379)
Q Consensus 269 n~~q~qL~~~~eE~~sl~ 286 (379)
.+++.+|...++++..+.
T Consensus 83 AeY~~kl~aYe~~~~~~~ 100 (497)
T 3iox_A 83 ADYPVKLKAYEDEQTSIK 100 (497)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666665433
No 30
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=87.41 E-value=11 Score=33.39 Aligned_cols=55 Identities=11% Similarity=0.028 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 232 AIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAIS 286 (379)
Q Consensus 232 eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~ 286 (379)
.|..|++++..+...+.+++.+.+.....-+..-.++-.++.++...++++..++
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq 123 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLK 123 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333322222222223333344444444444444433
No 31
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=87.02 E-value=12 Score=37.51 Aligned_cols=41 Identities=20% Similarity=0.331 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhccccccCceeeeecCCceeecccccCCCCC-CCCChh
Q 016990 289 IEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPK-IPVEWD 336 (379)
Q Consensus 289 ~~~~~~qLdkLrkTNV~nd~F~I~hdG~fGTINgfRLGrlp~-~~V~W~ 336 (379)
|+..|.||+.+..+|.+... .+ -++..|..+-+++ +|-+|.
T Consensus 181 ye~qqKQL~qv~a~~llP~~-~~------q~lp~LK~~p~kd~vP~~fK 222 (390)
T 1deq_A 181 YKNQQKQLEQVIAINLLPSR-DI------QYLPILKMSTITGPVPREFK 222 (390)
T ss_pred HHHHHHHHHhhhhhcccccc-cc------ccccccccccccccCChhhc
Confidence 44556678888888877642 11 2366677776665 334565
No 32
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=86.74 E-value=11 Score=30.09 Aligned_cols=36 Identities=25% Similarity=0.193 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (379)
Q Consensus 218 el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e 253 (379)
++.+++....+......+++.....+.++..+|..+
T Consensus 22 el~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 22 QMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444555555555555555555444
No 33
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=85.89 E-value=13 Score=30.27 Aligned_cols=67 Identities=19% Similarity=0.220 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (379)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~l 250 (379)
++.+++.+..+..|.+.+..-...++... ........+++.|...|...+..+|.++..+...+...
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e~~~------k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea 70 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADK------KAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKS 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666665554444433211 11122233445555555555555555555555444433
No 34
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=85.21 E-value=9.8 Score=39.77 Aligned_cols=46 Identities=11% Similarity=0.004 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCceeeeec
Q 016990 266 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHD 314 (379)
Q Consensus 266 ~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrkTNV~nd~F~I~hd 314 (379)
.....||..|.+...+.+-|+..+ ..|++.-|-.-.-+-.|.|.+.
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDI---diqirsCKgsCsr~~~~~vd~~ 176 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDI---DIKIRSCRGSCSRALAREVDLK 176 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHGGGTBSCCCCCCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhccccccchheeecchH
Confidence 344455555555555554444432 2456666666665666655543
No 35
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=84.95 E-value=11 Score=29.29 Aligned_cols=65 Identities=17% Similarity=0.207 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 181 LDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (379)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le 251 (379)
+++.+..+..|.+.+..-+..++... .+..+...+++.|...|...+..+|.++..+...+....
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l------~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~ 68 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADK------KAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555544444333211 111222333445555555555555555555544444433
No 36
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=84.95 E-value=14 Score=29.98 Aligned_cols=69 Identities=13% Similarity=0.238 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 228 KLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHL 296 (379)
Q Consensus 228 ~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qL 296 (379)
.+...++.++....++..++..|..+...++.+=+.+...+...+..|.+........++.....+..+
T Consensus 27 ~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rri 95 (101)
T 3u1c_A 27 QAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666666666555544445555555555554444444433333433333333
No 37
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=84.62 E-value=12 Score=30.96 Aligned_cols=50 Identities=24% Similarity=0.457 Sum_probs=26.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 209 VLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (379)
Q Consensus 209 ~~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~ 258 (379)
.++..+|..|...||.....++.+-..+..........+.+|+.|..+|.
T Consensus 29 ~mSKqELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~ 78 (104)
T 3s9g_A 29 NMSKQELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLR 78 (104)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHH
Confidence 34566676666666665555555544444433334444455555444443
No 38
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=84.04 E-value=12 Score=36.93 Aligned_cols=27 Identities=22% Similarity=0.371 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 230 EAAIEETEKQNAEVNAELKELELKSKR 256 (379)
Q Consensus 230 ~~eLeelEkE~~~l~~el~~le~e~~~ 256 (379)
.+.++++|.|...++.+|+.++++.++
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 442 QKKVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555544433
No 39
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=83.15 E-value=17 Score=29.38 Aligned_cols=24 Identities=13% Similarity=0.118 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 178 SDKLDKEVDDVTRDIEAYEACLQR 201 (379)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~ 201 (379)
++.+++.+..+..|.+.+..-...
T Consensus 4 md~iKkKm~~lk~e~e~a~d~ae~ 27 (101)
T 3u59_A 4 MEAIKKKMQMLKLDKENAIDRAEQ 27 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555554443333
No 40
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=82.87 E-value=20 Score=29.95 Aligned_cols=12 Identities=25% Similarity=0.473 Sum_probs=6.7
Q ss_pred HHHHHHHHHhch
Q 016990 194 AYEACLQRLEGE 205 (379)
Q Consensus 194 ~Y~~fL~~L~~~ 205 (379)
.|..++..|+.+
T Consensus 17 ~ye~~I~~LR~q 28 (119)
T 3ol1_A 17 LYEEEMRELRRQ 28 (119)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 466666655543
No 41
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=82.70 E-value=20 Score=30.00 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (379)
Q Consensus 218 el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le 251 (379)
|+.++......|..+|+.+...++.+...|.+++
T Consensus 37 Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e 70 (129)
T 3tnu_B 37 EISEMNRMIQRLRAEIDNVKKQCANLQNAIADAE 70 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3333444444455555555555544444444333
No 42
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=81.94 E-value=22 Score=29.89 Aligned_cols=22 Identities=36% Similarity=0.416 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHhccc
Q 016990 282 RDAISSKIEVSQAHLELLKRTN 303 (379)
Q Consensus 282 ~~sl~~q~~~~~~qLdkLrkTN 303 (379)
|.-+....+..+.+|..|++-|
T Consensus 85 REkl~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 85 REKLVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHH
Confidence 3345566677777888877654
No 43
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=81.31 E-value=18 Score=30.40 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 223 EEEERKLEAAIEETEKQNAEVNAELK 248 (379)
Q Consensus 223 e~EE~~L~~eLeelEkE~~~l~~el~ 248 (379)
......|..+|+.+...++.+...|.
T Consensus 44 rr~iq~L~~el~~l~~~~~sLE~~l~ 69 (131)
T 3tnu_A 44 RRTMQNLEIELQSQLSMKASLENSLE 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33333444444444444444443333
No 44
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=81.02 E-value=12 Score=30.10 Aligned_cols=33 Identities=30% Similarity=0.504 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (379)
Q Consensus 221 ~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e 253 (379)
.|+...+.+..+++.++++...+..++.+++.+
T Consensus 74 ~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~ 106 (117)
T 2zqm_A 74 ELKEKIETLEVRLNALERQEKKLNEKLKELTAQ 106 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666666666666666555543
No 45
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=80.93 E-value=5.4 Score=31.24 Aligned_cols=42 Identities=21% Similarity=0.168 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (379)
Q Consensus 214 ~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~ 255 (379)
+++..+.+-.+|.+..+..|+++|++..+.+++|..|+.+..
T Consensus 23 eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 23 DLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334344455566666677777777777777777766543
No 46
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=78.81 E-value=23 Score=28.23 Aligned_cols=11 Identities=9% Similarity=0.386 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 016990 228 KLEAAIEETEK 238 (379)
Q Consensus 228 ~L~~eLeelEk 238 (379)
.|.++.+++..
T Consensus 38 ~L~~e~~e~~~ 48 (81)
T 2jee_A 38 SLSQEVQNAQH 48 (81)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 33333333333
No 47
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=77.61 E-value=37 Score=29.96 Aligned_cols=30 Identities=13% Similarity=0.109 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016990 272 QFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (379)
Q Consensus 272 q~qL~~~~eE~~sl~~q~~~~~~qLdkLrk 301 (379)
+.....++.++.-....++..+.||..|+.
T Consensus 114 e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~ 143 (154)
T 2ocy_A 114 EILNKRLTEQLREKDTLLDTLTLQLKNLKK 143 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444556666677777764
No 48
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=77.21 E-value=30 Score=28.62 Aligned_cols=54 Identities=7% Similarity=0.028 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQ 272 (379)
Q Consensus 219 l~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q 272 (379)
+..|..........+..++.+.+.....+.+...+.+.++.+.++...++....
T Consensus 76 i~~L~~~I~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~~e~L~er~~~~~~~~~ 129 (150)
T 3ajw_A 76 IQTLEKAIEQHRLQLTQWTQKVDLALKSWREKKQRLQAWQTLQDRQTAAALLAE 129 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667777777788888888888888888888888888777776665443
No 49
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=77.20 E-value=26 Score=28.03 Aligned_cols=30 Identities=7% Similarity=0.168 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 270 NFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (379)
Q Consensus 270 ~~q~qL~~~~eE~~sl~~q~~~~~~qLdkL 299 (379)
.++.++..+..+...+..++......+..|
T Consensus 68 ~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l 97 (112)
T 1l8d_A 68 KYHLDLNNSKNTLAKLIDRKSELERELRRI 97 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443
No 50
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=77.18 E-value=38 Score=29.90 Aligned_cols=63 Identities=17% Similarity=0.092 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISS 287 (379)
Q Consensus 218 el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~ 287 (379)
.+..|+.|...|..+|.+++.+..+..+.+..+..|...|. -++|.++-.+..+++|.+.|-.
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLq-------lq~n~lE~kl~kLq~EN~~LV~ 131 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGT-------IENNVLQQKLSDLKKEHSQLVA 131 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555444444444433333333222 3345555556666666655433
No 51
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=76.64 E-value=9.2 Score=28.63 Aligned_cols=37 Identities=22% Similarity=0.326 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (379)
Q Consensus 223 e~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~e 259 (379)
..+...|..+.++|+++..+|..++..|+.|...|.+
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667778888888888888888877776655543
No 52
>2fup_A Hypothetical protein PA3352; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.48A {Pseudomonas aeruginosa} SCOP: a.47.5.1
Probab=76.59 E-value=18 Score=30.27 Aligned_cols=114 Identities=13% Similarity=0.102 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHH
Q 016990 187 DVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAEL---------KELELKSKRF 257 (379)
Q Consensus 187 ~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el---------~~le~e~~~L 257 (379)
.+.++++.|..++.-|+++..-. ..-+ ...+..+-+++..|..+|..+++++..+...+ .++-.. ...
T Consensus 11 ~L~~~~~~l~~L~~lL~~E~~~L-~~~d-~~~L~~i~~~k~~ll~~L~~~~~~R~~~l~~lg~~~~~~~~~~l~~~-~~~ 87 (157)
T 2fup_A 11 LFAEDIGHANQLLQLVDEEFQAL-ERRE-LPVLQQLLGAKQPLMQQLERNGRARAEILREAGVSLDREGLARYARE-RAD 87 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHTT-CTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHhc-ccc
Confidence 35567778888888877653210 0001 12566677888889999999999988775543 111000 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccc
Q 016990 258 KELEERYWQEFNNFQFQLIAHQEERDA-ISSKIEVSQAHLELLKRTN 303 (379)
Q Consensus 258 ~eeEe~~w~e~n~~q~qL~~~~eE~~s-l~~q~~~~~~qLdkLrkTN 303 (379)
..+=...|......-.++.+.-+.... +...+++.+.-|+-|+..+
T Consensus 88 ~~~l~~~~~~l~~l~~~~~~~N~~Ng~Li~~~l~~~~~~L~~L~~~~ 134 (157)
T 2fup_A 88 GAELLARGDELGELLERCQQANLRNGRIIRANQASTGSLLNILRGQD 134 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--CTTHHHHHHHHHHC---
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 122235788776666655544444443 4567788888888887643
No 53
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=76.15 E-value=25 Score=27.87 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (379)
Q Consensus 220 ~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~ 258 (379)
+.+|.+-..|+..+..++.+.+.-..+...++.|.+++-
T Consensus 16 q~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~ 54 (79)
T 3cvf_A 16 QDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAA 54 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555544444444444444443
No 54
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=75.41 E-value=36 Score=28.71 Aligned_cols=109 Identities=13% Similarity=0.178 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHhchhcccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH
Q 016990 187 DVTRDIEAYEACLQRLEGEARDVLSE-ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAEL---------KELELKSKR 256 (379)
Q Consensus 187 ~~~~E~d~Y~~fL~~L~~~~~~~~~e-e~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el---------~~le~e~~~ 256 (379)
.++.|.+.|..++.-|+++..-. .. -++ ..+..+-++...|..+|..++.++..+-+.+ .++-..
T Consensus 12 ~L~~~~~~l~~L~~lL~~E~~~L-~~~~d~-~~L~~i~~~K~~ll~~L~~~~~~R~~~l~~lgl~~~~~g~~~~~~~--- 86 (154)
T 3opc_A 12 CLERENALVVEFLHALEAETEAL-MDRRAH-ESLQAAVQRKETLADDLAQLGAERDALLSGAGLASGPAGTDAAAAA--- 86 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChhHHHHHHHh---
Confidence 34567777888888877654311 11 222 3566677788888999999988888775542 111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhc
Q 016990 257 FKELEERYWQEFNNFQFQLIAHQEERDA-ISSKIEVSQAHLELLKR 301 (379)
Q Consensus 257 L~eeEe~~w~e~n~~q~qL~~~~eE~~s-l~~q~~~~~~qLdkLrk 301 (379)
...=...|.....+-.+..+.-+.... |..++.+.+.-|+-|+.
T Consensus 87 -~~~l~~~w~~l~~l~~~c~~~N~~Ng~Li~~~l~~~~~~L~~L~~ 131 (154)
T 3opc_A 87 -HPELGPLWQALQANAAQAREHNQRNGTLIAVNLRHTQESLDALRQ 131 (154)
T ss_dssp -CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred -ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111135788776665555444444433 46677888888888873
No 55
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=75.38 E-value=30 Score=32.71 Aligned_cols=73 Identities=11% Similarity=0.270 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 293 (379)
Q Consensus 221 ~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~ 293 (379)
.|..+-+.+..+|+-|+-.+.-...||.++..+.++|+..-+...+....++.+-..+++++.-++.+++..+
T Consensus 153 ~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~q 225 (242)
T 3uux_B 153 ALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLE 225 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3455556667777777777777777888888777777777766666677777766667777766666655444
No 56
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=75.07 E-value=38 Score=28.81 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 232 AIEETEKQNAEVNAELKELELKSKR 256 (379)
Q Consensus 232 eLeelEkE~~~l~~el~~le~e~~~ 256 (379)
.+++|+.|...++++|.++.++.++
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~er 96 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVER 96 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333
No 57
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=74.54 E-value=10 Score=30.55 Aligned_cols=11 Identities=9% Similarity=0.241 Sum_probs=7.0
Q ss_pred HHHHHHHHHHH
Q 016990 263 RYWQEFNNFQF 273 (379)
Q Consensus 263 ~~w~e~n~~q~ 273 (379)
+..++||+.+-
T Consensus 45 ~~Lh~YNeiKD 55 (85)
T 3viq_B 45 DLLHTYNEIRD 55 (85)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhHHHH
Confidence 45677777653
No 58
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=74.49 E-value=29 Score=27.09 Aligned_cols=40 Identities=18% Similarity=0.251 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (379)
Q Consensus 219 l~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~ 258 (379)
++.+|.+-..|+..+..++...+.-..+...++.+.+.+-
T Consensus 9 Lq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~ 48 (72)
T 3cve_A 9 LQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLL 48 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555444444444444443
No 59
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=73.85 E-value=50 Score=33.28 Aligned_cols=14 Identities=14% Similarity=0.520 Sum_probs=10.8
Q ss_pred CCChhhHHHHHHHH
Q 016990 332 PVEWDEINAAWGQA 345 (379)
Q Consensus 332 ~V~W~EINAAwGQ~ 345 (379)
.-.|.|-=.++|..
T Consensus 205 ~R~W~~Yk~GFG~~ 218 (409)
T 1m1j_C 205 RRNWVQYKEGFGHL 218 (409)
T ss_dssp CCCHHHHHHCEEEE
T ss_pred cCCHHHHHhhhCCc
Confidence 44788888888876
No 60
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=73.51 E-value=43 Score=28.73 Aligned_cols=58 Identities=19% Similarity=0.260 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 180 KLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEV 243 (379)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l 243 (379)
.+..+-+.+..+.+.|..-+..+... ..++..+...|+..-..|..++.++..+...+
T Consensus 26 ~l~~eN~~Lk~e~e~l~~~~~~~~~~------~~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 26 RLRHENKDLKARLENAMEVAGRDFKR------AEELEKAKQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666776666554444321 12334444445555555555555555544433
No 61
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=73.21 E-value=13 Score=34.69 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 016990 276 IAHQEERDAISSKIEVSQAHLELLK 300 (379)
Q Consensus 276 ~~~~eE~~sl~~q~~~~~~qLdkLr 300 (379)
...+.++.++++++..++.+|+.++
T Consensus 124 ~~~~a~l~~~~a~l~~a~a~l~~a~ 148 (341)
T 3fpp_A 124 AVKQAQIGTIDAQIKRNQASLDTAK 148 (341)
T ss_dssp HHTHHHHHHHHHHHHHTHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555566666666665443
No 62
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=73.18 E-value=18 Score=28.56 Aligned_cols=33 Identities=21% Similarity=0.389 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (379)
Q Consensus 221 ~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e 253 (379)
.|+...+.+..+++.++++...+..++.+++..
T Consensus 69 ~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~ 101 (107)
T 1fxk_A 69 ELQEKLETLQLREKTIERQEERVMKKLQEMQVN 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555566666666666666666666665543
No 63
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=72.41 E-value=6.8 Score=37.86 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016990 231 AAIEETEKQNAEVNAELKELEL 252 (379)
Q Consensus 231 ~eLeelEkE~~~l~~el~~le~ 252 (379)
++++.|+.+.+++.+|+++++.
T Consensus 185 ~eie~L~~~~~~L~eEi~~Le~ 206 (315)
T 2ve7_A 185 FKLESLEAKNRALNEQIARLEQ 206 (315)
T ss_dssp THHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 64
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=72.26 E-value=77 Score=31.06 Aligned_cols=30 Identities=23% Similarity=0.310 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016990 272 QFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (379)
Q Consensus 272 q~qL~~~~eE~~sl~~q~~~~~~qLdkLrk 301 (379)
+....+++.|..-++.+++.+..++++||+
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (471)
T 3mq9_A 442 QKKVEELEGEITTLNHKLQDASAEVERLRR 471 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345667778888888999999999999875
No 65
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=71.89 E-value=35 Score=26.99 Aligned_cols=30 Identities=27% Similarity=0.441 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 228 KLEAAIEETEKQNAEVNAELKELELKSKRF 257 (379)
Q Consensus 228 ~L~~eLeelEkE~~~l~~el~~le~e~~~L 257 (379)
+|..-+..+++|.+.++..+..++.+.+.|
T Consensus 43 KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL 72 (78)
T 3iv1_A 43 KLEEMVTRLDQEVAEVDKNIELLKKKDEEL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555544433
No 66
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=71.88 E-value=43 Score=28.04 Aligned_cols=86 Identities=13% Similarity=0.208 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (379)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L 257 (379)
...|+.....+.-|++.|..-++....+... ....+++++..|..+...+...|.+||.....++..-+. -..-|
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~--~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~---t~~SL 79 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKEKLEHQYAQSYK--QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRA---TIVSL 79 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH---HHhhH
Confidence 3457888889999999999877776554322 134567777778777778888888888777766654332 23455
Q ss_pred HHHHHHHHHHH
Q 016990 258 KELEERYWQEF 268 (379)
Q Consensus 258 ~eeEe~~w~e~ 268 (379)
.+.|.+|=+.+
T Consensus 80 eD~E~k~n~ai 90 (111)
T 2v66_B 80 EDFEQRLNQAI 90 (111)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56665554443
No 67
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=71.76 E-value=1.9 Score=45.10 Aligned_cols=17 Identities=12% Similarity=0.407 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHhc
Q 016990 188 VTRDIEAYEACLQRLEG 204 (379)
Q Consensus 188 ~~~E~d~Y~~fL~~L~~ 204 (379)
+++++..|..-|..++.
T Consensus 333 ~~~~~~~~~~~~~~~~~ 349 (575)
T 2i1j_A 333 AEKKQQEYQDRLRQMQE 349 (575)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHH
Confidence 44445555554444443
No 68
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=71.53 E-value=22 Score=33.53 Aligned_cols=28 Identities=14% Similarity=0.214 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016990 273 FQLIAHQEERDAISSKIEVSQAHLELLK 300 (379)
Q Consensus 273 ~qL~~~~eE~~sl~~q~~~~~~qLdkLr 300 (379)
.++...+.++.++++++..++.+|+.++
T Consensus 122 ~~~~~a~a~~~~~~~~l~~~~~~l~~a~ 149 (369)
T 4dk0_A 122 ATLNNAKAEMDVVQENIKQAEIEVNTAE 149 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555566666666665554
No 69
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=71.04 E-value=58 Score=33.93 Aligned_cols=12 Identities=8% Similarity=-0.233 Sum_probs=6.9
Q ss_pred hccccccCceee
Q 016990 300 KRTNVLNDAFPI 311 (379)
Q Consensus 300 rkTNV~nd~F~I 311 (379)
.+.|+++-.|+|
T Consensus 371 ~~~~f~~~n~~p 382 (551)
T 2b5u_A 371 EIKQFNRFAHDP 382 (551)
T ss_dssp HHHHHGGGTTCT
T ss_pred hhhhhhhhccCh
Confidence 445666666654
No 70
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=70.08 E-value=50 Score=29.65 Aligned_cols=77 Identities=16% Similarity=0.109 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEER----------YWQEFNNFQFQLIAHQEERDAISS 287 (379)
Q Consensus 218 el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~----------~w~e~n~~q~qL~~~~eE~~sl~~ 287 (379)
....|.....+|...++.+|++...+..++..++.+...+++.+.. .--.-..+..|++++..+-.+++.
T Consensus 50 ~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e~~~~~~~~~~diD~~v~~~~~l~~Qll~l~Aed~AieD 129 (174)
T 2p22_A 50 FHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQFSSTSHVDDEDVNSIAVAKTDGLNQLYNLVAQDYALTD 129 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTSSCCCSSCGGGTEECSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhcCCcHHHHHHHHHHHHHHHHHH
Confidence 3344566666777777777777777777777776644443332211 000112345677777777777665
Q ss_pred HHHHHHH
Q 016990 288 KIEVSQA 294 (379)
Q Consensus 288 q~~~~~~ 294 (379)
-+-+...
T Consensus 130 aIy~L~~ 136 (174)
T 2p22_A 130 TIECLSR 136 (174)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544443
No 71
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=69.10 E-value=20 Score=28.63 Aligned_cols=38 Identities=18% Similarity=0.415 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (379)
Q Consensus 218 el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~ 255 (379)
|+.++...-.....+|.+.|+...+|..+++.++.+.+
T Consensus 32 ELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~e 69 (81)
T 1wt6_A 32 EMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERME 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444445555555555555555555554443
No 72
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=68.58 E-value=46 Score=30.53 Aligned_cols=7 Identities=0% Similarity=0.240 Sum_probs=3.5
Q ss_pred HHHHHHh
Q 016990 152 LKRAFEI 158 (379)
Q Consensus 152 l~~lFdI 158 (379)
+..+||.
T Consensus 123 i~elfd~ 129 (213)
T 1ik9_A 123 IRELIAY 129 (213)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3455554
No 73
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=67.90 E-value=62 Score=31.50 Aligned_cols=75 Identities=17% Similarity=0.257 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHhchhcccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 178 SDKLDKEVDDVTR---DIEAYEACLQRLEGEARDVL-SEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (379)
Q Consensus 178 le~Ld~qle~~~~---E~d~Y~~fL~~L~~~~~~~~-~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~ 252 (379)
.++|+.++..+++ .+-+|...|.+|..+....+ +..++...+......|+++..+..++...++.|+.+|+.|-.
T Consensus 26 ~eql~~~i~~L~~~ap~W~~aq~al~rL~eq~g~~~~ds~~v~~~mq~~Le~Ere~~~~Rd~~a~~k~~Le~~ierLs~ 104 (302)
T 3ibp_A 26 QEQLQSRIQSLMQRAPVWLAAQNSLNQLSEQCGEEFTSSQDVTEYLQQLLEREREAIVERDEVGARKNAVDEEIERLSQ 104 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHChHHHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5566666666654 45557788888887653333 345665555443333366666667777777777777776654
No 74
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=67.62 E-value=43 Score=26.27 Aligned_cols=13 Identities=31% Similarity=0.394 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHH
Q 016990 222 IEEEERKLEAAIE 234 (379)
Q Consensus 222 Le~EE~~L~~eLe 234 (379)
|+.+...|++++.
T Consensus 27 le~~Ie~LE~~i~ 39 (89)
T 2lw1_A 27 LPQLLEDLEAKLE 39 (89)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 75
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=67.11 E-value=45 Score=26.37 Aligned_cols=32 Identities=22% Similarity=0.409 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 223 EEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (379)
Q Consensus 223 e~EE~~L~~eLeelEkE~~~l~~el~~le~e~ 254 (379)
+.+-..+.+.|+++|.+...++..+..++...
T Consensus 5 ~~e~e~~~~klq~~E~rN~~Le~~v~~le~~L 36 (79)
T 3cvf_A 5 AAEREETQQKVQDLETRNAELEHQLRAMERSL 36 (79)
T ss_dssp -----CTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34444556666677766666666666666544
No 76
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=66.74 E-value=46 Score=26.30 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 016990 267 EFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 302 (379)
Q Consensus 267 e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrkT 302 (379)
+++.++..+-+.---+-.++++++..+..|.-||+.
T Consensus 50 d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLkk~ 85 (86)
T 3swk_A 50 TLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKL 85 (86)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445555555555555556778888888888888763
No 77
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=66.49 E-value=17 Score=36.12 Aligned_cols=8 Identities=13% Similarity=0.144 Sum_probs=3.1
Q ss_pred hhHHHHHH
Q 016990 336 DEINAAWG 343 (379)
Q Consensus 336 ~EINAAwG 343 (379)
.+|=...+
T Consensus 123 ~~Vf~~v~ 130 (403)
T 4etp_A 123 VDVFKEVG 130 (403)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34433333
No 78
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=66.26 E-value=53 Score=26.86 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 016990 279 QEERDAISSKIEVSQAHLELLK 300 (379)
Q Consensus 279 ~eE~~sl~~q~~~~~~qLdkLr 300 (379)
..+...+..++.+.+.++.+|+
T Consensus 67 ~~eKe~L~~ql~~lq~q~~~L~ 88 (94)
T 3jsv_C 67 VEKKEYLQEQLEQLQREFNKLK 88 (94)
T ss_dssp HHTTSHHHHHHHHHHHTTC---
T ss_pred HhHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666655554
No 79
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=65.66 E-value=50 Score=26.34 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (379)
Q Consensus 221 ~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L 257 (379)
.|-+|.+.|.-.++++|.|+-+.+..|+.-++|...|
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~L 59 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQL 59 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4557777888888888888888887777766544333
No 80
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=65.35 E-value=58 Score=27.02 Aligned_cols=30 Identities=23% Similarity=0.232 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016990 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEG 204 (379)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~ 204 (379)
..-|..|..+++.+..|+.....-++.+..
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~ 48 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAE 48 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888777766666543
No 81
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=65.05 E-value=78 Score=28.34 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 016990 180 KLDKEVDDVTRDIEAYEACLQRLEG 204 (379)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~L~~ 204 (379)
.|++|++++..-+.+=..--.++++
T Consensus 10 ~LekQL~E~n~kLk~EsE~~~rlkK 34 (168)
T 3o0z_A 10 QLQKQLEEANDLLRTESDTAVRLRK 34 (168)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3556666665555444444444443
No 82
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=64.92 E-value=50 Score=26.10 Aligned_cols=38 Identities=16% Similarity=0.278 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (379)
Q Consensus 215 l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~ 252 (379)
+....++|-.|...|..||..+..-+.+++..+.+++.
T Consensus 35 LI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEe 72 (77)
T 2w83_C 35 LIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEE 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444443333
No 83
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=63.52 E-value=22 Score=35.47 Aligned_cols=13 Identities=15% Similarity=0.212 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 016990 229 LEAAIEETEKQNA 241 (379)
Q Consensus 229 L~~eLeelEkE~~ 241 (379)
|.+++++++.+.+
T Consensus 15 l~~~~~~l~~~~~ 27 (403)
T 4etp_A 15 LKEKIAALKEKIK 27 (403)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 84
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=63.42 E-value=22 Score=26.07 Aligned_cols=34 Identities=21% Similarity=0.250 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 225 EERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (379)
Q Consensus 225 EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~ 258 (379)
....|+.+.+.|+.+...|..++..|+.+...|.
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666666555443
No 85
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=63.34 E-value=23 Score=28.39 Aligned_cols=36 Identities=8% Similarity=0.191 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (379)
Q Consensus 223 e~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~ 258 (379)
...+..+..+.+.|++|.+.|..++..|+.|...|.
T Consensus 35 k~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr 70 (87)
T 1hjb_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555677788888888888888887777665554
No 86
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=62.06 E-value=48 Score=28.17 Aligned_cols=16 Identities=31% Similarity=0.328 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 016990 282 RDAISSKIEVSQAHLE 297 (379)
Q Consensus 282 ~~sl~~q~~~~~~qLd 297 (379)
-..|..+|.-....||
T Consensus 73 Y~~L~KkYk~~~~~Ld 88 (119)
T 2avr_X 73 YQELASKYEDALKKLE 88 (119)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444444
No 87
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=62.01 E-value=21 Score=35.73 Aligned_cols=31 Identities=26% Similarity=0.257 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 221 KIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (379)
Q Consensus 221 ~Le~EE~~L~~eLeelEkE~~~l~~el~~le 251 (379)
.|+.|..+|.+++++++++.+++.++++.++
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~ 37 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCK 37 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555554444
No 88
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=62.00 E-value=12 Score=39.13 Aligned_cols=21 Identities=10% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016990 237 EKQNAEVNAELKELELKSKRF 257 (379)
Q Consensus 237 EkE~~~l~~el~~le~e~~~L 257 (379)
+.|+..+.+++.+.+.+..++
T Consensus 404 ~~e~~~l~~~~~~~~~~~~~~ 424 (575)
T 2i1j_A 404 AAERQKLEDEIRAKQEEVSRI 424 (575)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444
No 89
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=61.98 E-value=44 Score=28.93 Aligned_cols=12 Identities=25% Similarity=0.357 Sum_probs=0.4
Q ss_pred HHHHHHHHHHHh
Q 016990 289 IEVSQAHLELLK 300 (379)
Q Consensus 289 ~~~~~~qLdkLr 300 (379)
++..+.||..|+
T Consensus 119 l~~lq~QL~~LK 130 (135)
T 2e7s_A 119 LDTLTLQLKNLK 130 (135)
T ss_dssp C-----------
T ss_pred HHHHHHHHHHHH
Confidence 344445555554
No 90
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=61.79 E-value=1.1e+02 Score=30.16 Aligned_cols=61 Identities=21% Similarity=0.312 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAI 285 (379)
Q Consensus 218 el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl 285 (379)
|+..+..--+.|...|+++.....+++++|+...+....++ ++.|.++-++..+...+|..
T Consensus 199 e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-------~~~~~lkp~l~ql~k~rd~~ 259 (373)
T 3hhm_B 199 EIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREID-------KRMNSIKPDLIQLRKTRDQY 259 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhccChHHHHHHHHHHHH
Confidence 33445555556777777777777777777665554443333 56788888877777777653
No 91
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=60.96 E-value=41 Score=30.73 Aligned_cols=34 Identities=9% Similarity=0.230 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (379)
Q Consensus 221 ~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~ 254 (379)
+|-.|-..|.++|+..+.|.+.|.+++..++...
T Consensus 24 ~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 24 NLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445555556666655555555555555555544
No 92
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=60.52 E-value=64 Score=25.87 Aligned_cols=67 Identities=16% Similarity=0.199 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 228 KLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQA 294 (379)
Q Consensus 228 ~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~ 294 (379)
.+...+..++....++..++..+..+...++.+=+.+-..+...+..|......+...++.....+.
T Consensus 27 ~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnR 93 (101)
T 3u59_A 27 QAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNR 93 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555566666665555554444444445555544444444433333333333333
No 93
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=60.52 E-value=1.5e+02 Score=30.26 Aligned_cols=27 Identities=11% Similarity=0.147 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016990 178 SDKLDKEVDDVTRDIEAYEACLQRLEG 204 (379)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~ 204 (379)
.+-|-++-+.++++.+.-+..|..|+.
T Consensus 88 ~D~L~k~q~~V~~~LqeLe~~l~~lsn 114 (464)
T 1m1j_B 88 QTTLLKQEKTVKPVLRDLKDRVAKFSD 114 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHhHHHHHHHHHHHHhh
Confidence 445555555566667666777777654
No 94
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=60.27 E-value=57 Score=33.53 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (379)
Q Consensus 217 ~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e 253 (379)
.++..|.++-+++..++++|+.++.++.++|.++...
T Consensus 70 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~ 106 (501)
T 1wle_A 70 PGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVN 106 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4556677888888999999999999998888876543
No 95
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=60.03 E-value=24 Score=35.68 Aligned_cols=90 Identities=16% Similarity=0.251 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQA 294 (379)
Q Consensus 215 l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~ 294 (379)
+..++..|.++-+++..++++|..++..+.++|..+....++. +....+...+.-++.+++++...++.++...
T Consensus 29 ~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 102 (455)
T 2dq0_A 29 WVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPV----DELLAKSREIVKRIGELENEVEELKKKIDYY-- 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCT----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3456667788888899999999999999998888765432111 1233334444444444444444443333222
Q ss_pred HHHHHhccccccCceeeee
Q 016990 295 HLELLKRTNVLNDAFPIWH 313 (379)
Q Consensus 295 qLdkLrkTNV~nd~F~I~h 313 (379)
.|+==|+..+.=.++.
T Consensus 103 ---~~~ipN~~~~~vP~g~ 118 (455)
T 2dq0_A 103 ---LWRLPNITHPSVPVGK 118 (455)
T ss_dssp ---HTTSCCCCCTTSCCCS
T ss_pred ---HHhCCCCCCccCCCCC
Confidence 1233466655544443
No 96
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=59.94 E-value=26 Score=32.97 Aligned_cols=32 Identities=16% Similarity=0.220 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 267 EFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 298 (379)
Q Consensus 267 e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdk 298 (379)
.+...+.++...+.++..++++++.++.+|++
T Consensus 123 ~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~ 154 (369)
T 4dk0_A 123 TLNNAKAEMDVVQENIKQAEIEVNTAETNLGY 154 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44455556666677777777777777776643
No 97
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=59.48 E-value=23 Score=25.05 Aligned_cols=29 Identities=14% Similarity=0.354 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 229 LEAAIEETEKQNAEVNAELKELELKSKRF 257 (379)
Q Consensus 229 L~~eLeelEkE~~~l~~el~~le~e~~~L 257 (379)
|.+.++.+-+|.+..+++|.+++.+.+.|
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlkeL 35 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQQL 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555444333
No 98
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=58.81 E-value=34 Score=35.22 Aligned_cols=87 Identities=16% Similarity=0.122 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 295 (379)
Q Consensus 216 ~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~q 295 (379)
..++..|.++-+++..++++|..++..+.++|..++...+..+ ....+...+.-+ ...++.++.....+
T Consensus 32 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~----~l~~~~~~l~~~-------i~~le~~~~~~~~~ 100 (485)
T 3qne_A 32 VDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAK----DLIAEKEKLSNE-------KKEIIEKEAEADKN 100 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCH----HHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHH----HHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 4456667777888888899999888888888877654322111 122233334444 44444444444444
Q ss_pred HHHH--hccccccCceeeee
Q 016990 296 LELL--KRTNVLNDAFPIWH 313 (379)
Q Consensus 296 LdkL--rkTNV~nd~F~I~h 313 (379)
|+.+ +==|+..+.=.|+-
T Consensus 101 ~~~~l~~iPN~~~~~vP~g~ 120 (485)
T 3qne_A 101 LRSKINQVGNIVHESVVDSQ 120 (485)
T ss_dssp HHHHHTTSCCCCCTTSCCCS
T ss_pred HHHHHHhCCCCCCccCCCCC
Confidence 4322 22466666555553
No 99
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=58.22 E-value=86 Score=26.64 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 228 KLEAAIEETEKQNAEVNAELKELELK 253 (379)
Q Consensus 228 ~L~~eLeelEkE~~~l~~el~~le~e 253 (379)
+|..||..|..++....++++.+..+
T Consensus 75 eLqgEI~~Lnq~Lq~a~ae~erlr~~ 100 (121)
T 3mq7_A 75 ELEGEITTLNHKLQDASAEVERLRRE 100 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444444444444443
No 100
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=57.87 E-value=53 Score=30.56 Aligned_cols=31 Identities=10% Similarity=0.119 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 268 FNNFQFQLIAHQEERDAISSKIEVSQAHLEL 298 (379)
Q Consensus 268 ~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdk 298 (379)
+...+.++...+.++..++++++.++.+|++
T Consensus 123 ~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~ 153 (341)
T 3fpp_A 123 MAVKQAQIGTIDAQIKRNQASLDTAKTNLDY 153 (341)
T ss_dssp HHHTHHHHHHHHHHHHHTHHHHTTTTTTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 3444455555566666666666666655543
No 101
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=57.60 E-value=51 Score=33.89 Aligned_cols=37 Identities=8% Similarity=0.076 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (379)
Q Consensus 216 ~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~ 252 (379)
..++..|.++-+++..++++|..++..+.++|..+..
T Consensus 36 ~d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~ 72 (484)
T 3lss_A 36 VDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKK 72 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455667777788888888888888888888877655
No 102
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=56.80 E-value=33 Score=25.39 Aligned_cols=32 Identities=16% Similarity=0.359 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 226 ERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (379)
Q Consensus 226 E~~L~~eLeelEkE~~~l~~el~~le~e~~~L 257 (379)
...|..+.+.|+.+...|..++..|+.+...|
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666666666666655554444
No 103
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=55.51 E-value=76 Score=25.19 Aligned_cols=20 Identities=0% Similarity=0.006 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016990 222 IEEEERKLEAAIEETEKQNA 241 (379)
Q Consensus 222 Le~EE~~L~~eLeelEkE~~ 241 (379)
+..+...+..++..++.+..
T Consensus 18 l~~~~~~l~~q~~~l~~~~~ 37 (117)
T 2zqm_A 18 YQQQLQLVVQQKQKVQLELT 37 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333344443333333
No 104
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=54.94 E-value=67 Score=33.03 Aligned_cols=30 Identities=10% Similarity=0.076 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCCCcceeEEec
Q 016990 336 DEINAAWGQACLLLHTMCQYFRPKFPYPFFTS 367 (379)
Q Consensus 336 ~EINAAwGQ~~LLL~tla~kl~~~FqYrLvp~ 367 (379)
+++.+.+=.++-+...|-++||+ .||++-+
T Consensus 310 e~s~~e~e~ml~~~e~il~~LgL--pyrvv~~ 339 (485)
T 3qne_A 310 EKSWEEFDRMIGCSEEFYQSLGL--PYRVVGI 339 (485)
T ss_dssp GGHHHHHHHHHHHHHHHHHHTTC--CEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCC--cEEEEEc
Confidence 34444455555555666677766 5776654
No 105
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=54.62 E-value=29 Score=28.15 Aligned_cols=12 Identities=8% Similarity=0.205 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 016990 230 EAAIEETEKQNA 241 (379)
Q Consensus 230 ~~eLeelEkE~~ 241 (379)
..+++.|..|..
T Consensus 61 ~~e~~~L~~e~~ 72 (90)
T 2wt7_B 61 IQQVEQLKQEVS 72 (90)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 106
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=54.06 E-value=91 Score=25.81 Aligned_cols=50 Identities=16% Similarity=0.238 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQ 266 (379)
Q Consensus 216 ~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~ 266 (379)
.+.+..+++|-++|...-...-....+|+.+++.|..|...|-.+ .+.|+
T Consensus 43 E~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e-~~~~~ 92 (104)
T 3s9g_A 43 EKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTE-NELHR 92 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHH-HHhhc
Confidence 344445555555555544444455555555556666555555433 23444
No 107
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=54.04 E-value=53 Score=25.61 Aligned_cols=10 Identities=20% Similarity=0.262 Sum_probs=4.6
Q ss_pred HHHHHHHHhc
Q 016990 292 SQAHLELLKR 301 (379)
Q Consensus 292 ~~~qLdkLrk 301 (379)
.+.+||+++.
T Consensus 59 LqseLDKfrS 68 (72)
T 3nmd_A 59 LQNELDKYRS 68 (72)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHHHhhc
Confidence 3444555543
No 108
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=53.39 E-value=87 Score=26.08 Aligned_cols=41 Identities=12% Similarity=0.299 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 231 AAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNF 271 (379)
Q Consensus 231 ~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~ 271 (379)
++|.+...+.+++.+++.+++.....++.+-.-||....+.
T Consensus 11 ~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdI 51 (106)
T 4e61_A 11 AELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDI 51 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555555555544444455444333
No 109
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=53.33 E-value=73 Score=32.16 Aligned_cols=29 Identities=10% Similarity=-0.072 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCcceeEEec
Q 016990 337 EINAAWGQACLLLHTMCQYFRPKFPYPFFTS 367 (379)
Q Consensus 337 EINAAwGQ~~LLL~tla~kl~~~FqYrLvp~ 367 (379)
++.+..-.++-+...+.+.||+. ||++-+
T Consensus 315 ~s~~~~~e~l~~~~~il~~LGL~--yrv~~~ 343 (455)
T 2dq0_A 315 ESWEWHEKIIRNAEELFQELEIP--YRVVNI 343 (455)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCC--EEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCc--eEEEEC
Confidence 44444555666666777788774 666554
No 110
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=52.59 E-value=32 Score=27.04 Aligned_cols=36 Identities=8% Similarity=0.191 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (379)
Q Consensus 223 e~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~ 258 (379)
...+..+..+.++|++|...|..++..|+.|...|.
T Consensus 35 k~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556677788888888888888888877765554
No 111
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=52.40 E-value=1e+02 Score=26.78 Aligned_cols=29 Identities=17% Similarity=0.146 Sum_probs=13.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 211 SEADFLKEKLKIEEEERKLEAAIEETEKQ 239 (379)
Q Consensus 211 ~ee~l~~el~~Le~EE~~L~~eLeelEkE 239 (379)
++++-.+.+.+|++|-+...+++++.-++
T Consensus 86 seeeQ~~ri~~Le~E~~~~~~el~~~v~e 114 (151)
T 1yke_B 86 SAEEQLRKIDMLQKKLVEVEDEKIEAIKK 114 (151)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555544444444443333
No 112
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=52.23 E-value=1e+02 Score=25.78 Aligned_cols=41 Identities=24% Similarity=0.305 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 016990 256 RFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTN 303 (379)
Q Consensus 256 ~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrkTN 303 (379)
.|.++-..|-+-.++.+.+|..+...+..+.. +|.+|++-|
T Consensus 60 ~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~-------eL~rLQ~eN 100 (112)
T 1x79_B 60 LLEELQQGLSQAKRDVQEQMAVLMQSREQVSE-------ELVRLQKDN 100 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------C--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhc
Confidence 44555555666666666666666666655444 455555544
No 113
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=52.06 E-value=26 Score=28.90 Aligned_cols=30 Identities=27% Similarity=0.356 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 225 EERKLEAAIEETEKQNAEVNAELKELELKS 254 (379)
Q Consensus 225 EE~~L~~eLeelEkE~~~l~~el~~le~e~ 254 (379)
+-..|.++|+.|+.|..+|.+++..|+.+.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777777777777666654
No 114
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=51.96 E-value=71 Score=24.98 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 016990 182 DKEVDDVTRDIEAYEACLQRLE 203 (379)
Q Consensus 182 d~qle~~~~E~d~Y~~fL~~L~ 203 (379)
+++++.+..++.....-+..|+
T Consensus 21 qrEle~le~~Ie~LE~~i~~le 42 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQ 42 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444
No 115
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=51.13 E-value=69 Score=26.36 Aligned_cols=36 Identities=19% Similarity=0.178 Sum_probs=24.2
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016990 165 VEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEG 204 (379)
Q Consensus 165 IDhPLC~ECtd~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~ 204 (379)
-+.|++.+ =+..+.++++.++.|++...+..+.|+.
T Consensus 5 ~~~~~~~e----~~~~lr~ei~~Le~E~~rLr~~~~~LE~ 40 (100)
T 1go4_E 5 QSFLFSRE----EADTLRLKVEELEGERSRLEEEKRMLEA 40 (100)
T ss_dssp ----CHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcchH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555444 4566888888899999888888887764
No 116
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=50.50 E-value=26 Score=25.56 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 221 KIEEEERKLEAAIEETEKQNAEVNAEL 247 (379)
Q Consensus 221 ~Le~EE~~L~~eLeelEkE~~~l~~el 247 (379)
.|..|-.+|.+++++|.++.+++.+++
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554443
No 117
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=50.50 E-value=1e+02 Score=25.23 Aligned_cols=6 Identities=33% Similarity=0.534 Sum_probs=2.2
Q ss_pred HHHHHH
Q 016990 264 YWQEFN 269 (379)
Q Consensus 264 ~w~e~n 269 (379)
.+.+=|
T Consensus 63 LFeEAN 68 (97)
T 2eqb_B 63 LFDEAN 68 (97)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 118
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=50.40 E-value=25 Score=29.01 Aligned_cols=33 Identities=3% Similarity=0.097 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 226 ERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (379)
Q Consensus 226 E~~L~~eLeelEkE~~~l~~el~~le~e~~~L~ 258 (379)
...|.+||+.|+.+...|++.|..++...+.+.
T Consensus 8 ~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 8 LEGLTQDLRQLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666666666666666666655554444
No 119
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=50.39 E-value=38 Score=25.19 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 217 KEKLKIEEEERKLEAAIEETEKQNAEVN 244 (379)
Q Consensus 217 ~el~~Le~EE~~L~~eLeelEkE~~~l~ 244 (379)
.+...|+.+-..|..++..|+.|...|.
T Consensus 30 ~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 30 GECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444555544444443
No 120
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=50.07 E-value=1.2e+02 Score=25.90 Aligned_cols=106 Identities=18% Similarity=0.308 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 180 KLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEAD----FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (379)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~----l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~ 255 (379)
.|.+.+..++++...|..-++.+..........+. ++.+ |+..+.+| ..|++|.+...+++.++..++.+..
T Consensus 10 ~l~~KvAElekkv~~lek~lk~~~e~d~e~y~ke~~~~~~qse---le~k~aeL-e~leeL~~ki~eL~~kvA~le~e~~ 85 (125)
T 2pms_C 10 APQAKIAELENQVHRLEQELKEIDESESEDYAKEGFRAPLQSK---LDAKKAKL-SKLEELSDKIDELDAEIAKLEDQLK 85 (125)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTTTCC------------CHHHHH---HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHhHHHHHH---HHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 46778888888888887777665443221111111 1111 22222211 1235566666666667777766665
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 256 RFKEL---EERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (379)
Q Consensus 256 ~L~ee---Ee~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkL 299 (379)
+++.. +. |. +..++..+..-.+.++-++..|+.+
T Consensus 86 ~~e~~~~~~~-~~---------~e~le~~la~KkAEleKtqa~Ld~a 122 (125)
T 2pms_C 86 AAEENNNVED-YF---------KEGLEKTIAAKKAELEKTEADLKKA 122 (125)
T ss_dssp CCCC----CH-HH---------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccchH-HH---------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44321 11 11 2233444444445555566666654
No 121
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=49.73 E-value=1e+02 Score=26.12 Aligned_cols=7 Identities=14% Similarity=0.150 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 016990 217 KEKLKIE 223 (379)
Q Consensus 217 ~el~~Le 223 (379)
.++..|+
T Consensus 16 ae~q~L~ 22 (119)
T 3etw_A 16 AEYQNLA 22 (119)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444443
No 122
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=49.69 E-value=1.2e+02 Score=25.67 Aligned_cols=29 Identities=17% Similarity=0.146 Sum_probs=12.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 211 SEADFLKEKLKIEEEERKLEAAIEETEKQ 239 (379)
Q Consensus 211 ~ee~l~~el~~Le~EE~~L~~eLeelEkE 239 (379)
++++-.+.+.+|++|-+...+++++.-++
T Consensus 86 see~Q~~ri~~L~~E~~~~~~el~~~v~e 114 (132)
T 1ykh_B 86 SAEEQLRKIDMLQKKLVEVEDEKIEAIKK 114 (132)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555444444444443333
No 123
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=49.64 E-value=99 Score=26.82 Aligned_cols=44 Identities=5% Similarity=0.119 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cccCceeeeec
Q 016990 271 FQFQLIAHQEERDAISSKIEVSQAHLELLKRTN-VLNDAFPIWHD 314 (379)
Q Consensus 271 ~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrkTN-V~nd~F~I~hd 314 (379)
++.+...+..++.....++..|....+||+|.+ -+=-+|++-|.
T Consensus 43 ~E~E~q~~~~kk~~Aekql~~Ake~~eKlkKKrsSv~gs~~~aHs 87 (136)
T 3ter_A 43 CENEMAFLEKQRQDCFKEMKEAIEMVDRLQKKQGSVLSSLKLATG 87 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCCCCS
T ss_pred hHHHHHHHHHccccHHHHHHHHHHHHHHHHHhhhchheeeeeecC
Confidence 344445556667777888999999999999873 23334444443
No 124
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=49.63 E-value=1e+02 Score=30.68 Aligned_cols=71 Identities=18% Similarity=0.272 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (379)
Q Consensus 174 td~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~l 250 (379)
.+.+++ ++.+...+..+.+..+.--+.+.++... ...+ +...|.++-+.+..+|+++|.+..++++++..+
T Consensus 27 ~~~~~~-~~~~~r~~~~~~~~l~~~~n~~sk~i~~-~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (421)
T 1ses_A 27 LEALLA-LDREVQELKKRLQEVQTERNQVAKRVPK-APPE----EKEALIARGKALGEEAKRLEEALREKEARLEAL 97 (421)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHSSS-SCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355554 7777777777777777666666554322 1111 122344555555666666666666666555543
No 125
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=49.13 E-value=22 Score=26.26 Aligned_cols=33 Identities=18% Similarity=0.276 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 225 EERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (379)
Q Consensus 225 EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L 257 (379)
....|+.+++.|+.+...|..++..|+.+...|
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666677777777777766666655444
No 126
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=49.00 E-value=37 Score=22.29 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016990 229 LEAAIEETEKQNAEVNAEL 247 (379)
Q Consensus 229 L~~eLeelEkE~~~l~~el 247 (379)
|.+|+..|.+|.+.+.=|+
T Consensus 7 lkqeiaalkkeiaalkfei 25 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEI 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444443333333
No 127
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=48.52 E-value=1.2e+02 Score=25.23 Aligned_cols=23 Identities=30% Similarity=0.294 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016990 228 KLEAAIEETEKQNAEVNAELKEL 250 (379)
Q Consensus 228 ~L~~eLeelEkE~~~l~~el~~l 250 (379)
-|.-.|+++|...+++..+.++.
T Consensus 34 lLKD~LEe~eE~~aql~Re~~eK 56 (103)
T 4h22_A 34 TLKDMLLELEEQLAESRRQYEEK 56 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443333
No 128
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=48.35 E-value=1.1e+02 Score=25.03 Aligned_cols=81 Identities=11% Similarity=0.224 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhch----hcc--------------cCC--------------HHHHHHHHHHHH
Q 016990 176 VLSDKLDKEVDDVTRDIEAYEACLQRLEGE----ARD--------------VLS--------------EADFLKEKLKIE 223 (379)
Q Consensus 176 ~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~----~~~--------------~~~--------------ee~l~~el~~Le 223 (379)
..++.+..++..+......|..+++.|+.- ..+ ..+ +-++.+...-++
T Consensus 15 ~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~vE~~~~eA~~~l~ 94 (133)
T 1fxk_C 15 SQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIKKNFEDAMESIK 94 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEEEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEEEEeeHHHHHHHHH
Confidence 345666667777777777787777766531 100 000 011222333355
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 224 EEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (379)
Q Consensus 224 ~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~ 256 (379)
...+.+...++.+++....+.+++..++.+..+
T Consensus 95 ~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~ 127 (133)
T 1fxk_C 95 SQKNELESTLQKMGENLRAITDIMMKLSPQAEE 127 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666776666666666666554433
No 129
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=47.33 E-value=1.7e+02 Score=26.71 Aligned_cols=41 Identities=15% Similarity=0.170 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 016990 265 WQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVL 305 (379)
Q Consensus 265 w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrkTNV~ 305 (379)
..+|..|-.--..+.-+...|..++..-+.||+.|+.+=|-
T Consensus 147 l~DY~~fv~mKa~Ll~eqReLddkIklgeEQL~~L~~sL~q 187 (190)
T 3thf_A 147 CADYDYFINMKAKLIADARDLAVRIKGSEEQLSSLSDALVQ 187 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHhhcc
Confidence 44555555555556667778889999999999999876443
No 130
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=47.08 E-value=1.3e+02 Score=25.42 Aligned_cols=11 Identities=18% Similarity=0.440 Sum_probs=6.9
Q ss_pred HHHHHHhcccc
Q 016990 294 AHLELLKRTNV 304 (379)
Q Consensus 294 ~qLdkLrkTNV 304 (379)
..+.+||--|+
T Consensus 102 E~ik~lr~gn~ 112 (119)
T 3etw_A 102 EKIQALRAGNL 112 (119)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHcCCc
Confidence 35666776665
No 131
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=44.95 E-value=59 Score=32.52 Aligned_cols=29 Identities=7% Similarity=0.051 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 227 RKLEAAIEETEKQNAEVNAELKELELKSK 255 (379)
Q Consensus 227 ~~L~~eLeelEkE~~~l~~el~~le~e~~ 255 (379)
..|..||.++.++.+++.++++.++.+.+
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~ 34 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELE 34 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666665555555555555554433
No 132
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=44.78 E-value=1.2e+02 Score=24.21 Aligned_cols=10 Identities=0% Similarity=0.032 Sum_probs=0.5
Q ss_pred HHHHHHHHHH
Q 016990 186 DDVTRDIEAY 195 (379)
Q Consensus 186 e~~~~E~d~Y 195 (379)
..+++++-.|
T Consensus 5 ~~~Ekd~~~~ 14 (81)
T 3qh9_A 5 VGMEKEQREQ 14 (81)
T ss_dssp ---------C
T ss_pred hHHhhhhhhh
Confidence 3444444444
No 133
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=44.46 E-value=68 Score=31.31 Aligned_cols=14 Identities=14% Similarity=0.470 Sum_probs=10.5
Q ss_pred CCChhhHHHHHHHH
Q 016990 332 PVEWDEINAAWGQA 345 (379)
Q Consensus 332 ~V~W~EINAAwGQ~ 345 (379)
.-.|.|-=.++|..
T Consensus 127 ~R~W~~Yk~GFG~~ 140 (323)
T 1lwu_C 127 TRDWVSYREGFGYL 140 (323)
T ss_dssp CCCHHHHHHCEEEE
T ss_pred cCCHHHHhhhhCCc
Confidence 44788888888875
No 134
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=44.34 E-value=49 Score=21.69 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 232 AIEETEKQNAEVNAELKELELKSKRFK 258 (379)
Q Consensus 232 eLeelEkE~~~l~~el~~le~e~~~L~ 258 (379)
|+..|.+|.+.+..|+..++-|...|+
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555544443
No 135
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=43.99 E-value=1.1e+02 Score=24.53 Aligned_cols=15 Identities=20% Similarity=0.149 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 016990 229 LEAAIEETEKQNAEV 243 (379)
Q Consensus 229 L~~eLeelEkE~~~l 243 (379)
-.++|+.+|++....
T Consensus 56 h~~ei~~le~~i~rh 70 (84)
T 1gmj_A 56 HAKEIERLQKEIERH 70 (84)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444433333
No 136
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=43.90 E-value=1.4e+02 Score=24.85 Aligned_cols=12 Identities=17% Similarity=0.235 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 016990 229 LEAAIEETEKQN 240 (379)
Q Consensus 229 L~~eLeelEkE~ 240 (379)
+...+..|+.+.
T Consensus 43 lrr~iq~L~~el 54 (131)
T 3tnu_A 43 LRRTMQNLEIEL 54 (131)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 137
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=43.74 E-value=74 Score=28.64 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016990 275 LIAHQEERDAISSKIEVSQAHLE 297 (379)
Q Consensus 275 L~~~~eE~~sl~~q~~~~~~qLd 297 (379)
+...+.++.+.+++++.++.+|+
T Consensus 107 ~~~a~a~l~~a~a~l~~a~~~l~ 129 (277)
T 2f1m_A 107 AQQANAAVTAAKAAVETARINLA 129 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334444455555555555444
No 138
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=43.73 E-value=37 Score=22.26 Aligned_cols=6 Identities=50% Similarity=0.578 Sum_probs=2.2
Q ss_pred HHHHHH
Q 016990 237 EKQNAE 242 (379)
Q Consensus 237 EkE~~~ 242 (379)
|+|.++
T Consensus 7 ekevaq 12 (33)
T 1fmh_A 7 EKEVAQ 12 (33)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 139
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=43.72 E-value=46 Score=26.64 Aligned_cols=34 Identities=15% Similarity=0.302 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELK 248 (379)
Q Consensus 215 l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~ 248 (379)
+..+...|+.|-..|..+|+.|++|...+..-+.
T Consensus 41 ~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 41 TQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666666666666666666665554444
No 140
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=43.50 E-value=36 Score=23.02 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 226 ERKLEAAIEETEKQNAEVNAELKEL 250 (379)
Q Consensus 226 E~~L~~eLeelEkE~~~l~~el~~l 250 (379)
-....+.|++++++...|++++..|
T Consensus 9 n~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 9 NDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 3445677778888877777776654
No 141
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=43.01 E-value=3e+02 Score=28.47 Aligned_cols=71 Identities=18% Similarity=0.254 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016990 231 AAIEETEKQNAEVNAELKELELKS----KRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (379)
Q Consensus 231 ~eLeelEkE~~~l~~el~~le~e~----~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrk 301 (379)
+.+.+...+.+++.+|.++++.+- ...+..-++|-+++-.++.++.+.+.++..-+.........|..+.+
T Consensus 34 ~~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~~AeY~~kl~aYe~~~~~~~k~lae~ek 108 (497)
T 3iox_A 34 AAVAANNAANAALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKDLADYPVKLKAYEDEQTSIKAALAELEK 108 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444455555544444322 22333445677777777777777776665543333333334444333
No 142
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=42.95 E-value=41 Score=21.76 Aligned_cols=20 Identities=35% Similarity=0.413 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016990 235 ETEKQNAEVNAELKELELKS 254 (379)
Q Consensus 235 elEkE~~~l~~el~~le~e~ 254 (379)
.||+..+.++..+..++.+.
T Consensus 5 alekkcaalesklqalekkl 24 (31)
T 3ljm_A 5 ALEKKCAALESKLQALEKKL 24 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445554444444444433
No 143
>3etv_A Protein transport protein TIP20,linker,protein transport protein DSL1; TIP20P-DSL1P complex, endoplasmic reticulum, ER-golgi transport; 1.94A {Saccharomyces cerevisiae} PDB: 3etu_A
Probab=42.88 E-value=77 Score=31.48 Aligned_cols=87 Identities=14% Similarity=0.137 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhcccCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 181 LDKEVDDVTRDIEAYEACLQRLEGEARDVLSEA--DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (379)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee--~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~ 258 (379)
++.+++++++||+....-|+..+.......++. +....+..+.+++..|.+||..+ +.++.+..-|.+.+... ++-
T Consensus 14 id~~I~~i~~eRd~La~~lq~~~~~~~~~~~~~~~~~~~d~e~llkre~~Lt~EL~~l-~~LK~Vs~Li~EfktN~-ell 91 (355)
T 3etv_A 14 INDRIKQVQNERNELASKLQNLKQSLASNDTGGGSGGGSDSSDLLQREAILANELNIL-DNLKTFLNLIKEVKTNL-NIL 91 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC---------------------CTTHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCcchhhHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHhhH-HHH
Confidence 789999999999999998888764211100111 12223334555566666666443 23444444444444432 344
Q ss_pred HHHHHHHHHHH
Q 016990 259 ELEERYWQEFN 269 (379)
Q Consensus 259 eeEe~~w~e~n 269 (379)
+.|.-|+.-.|
T Consensus 92 ElENCyYSLqn 102 (355)
T 3etv_A 92 ELENCYYSLQS 102 (355)
T ss_dssp CHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666544
No 144
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=42.47 E-value=3.2e+02 Score=28.53 Aligned_cols=17 Identities=6% Similarity=0.184 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHhcc
Q 016990 286 SSKIEVSQAHLELLKRT 302 (379)
Q Consensus 286 ~~q~~~~~~qLdkLrkT 302 (379)
..+....+.+++.|++.
T Consensus 566 ~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 566 QKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34445556677777776
No 145
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=42.37 E-value=43 Score=23.57 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016990 226 ERKLEAAIEETEKQNAEVNAELK 248 (379)
Q Consensus 226 E~~L~~eLeelEkE~~~l~~el~ 248 (379)
...|+.+|+.+|+.++.+...+.
T Consensus 22 laaleselqalekklaalksklq 44 (48)
T 1g6u_A 22 LAALESELQALEKKLAALKSKLQ 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666555544443
No 146
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=41.57 E-value=48 Score=22.72 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 234 EETEKQNAEVNAELKELELKSKRF 257 (379)
Q Consensus 234 eelEkE~~~l~~el~~le~e~~~L 257 (379)
+.|.++....+.+|..|+.+..+|
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN~eL 33 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHH
Confidence 444555555555566555554444
No 147
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=41.02 E-value=1.5e+02 Score=24.24 Aligned_cols=18 Identities=39% Similarity=0.436 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 016990 285 ISSKIEVSQAHLELLKRT 302 (379)
Q Consensus 285 l~~q~~~~~~qLdkLrkT 302 (379)
+....+..+.+|..|++-
T Consensus 66 l~~eKe~L~~ql~~lq~q 83 (94)
T 3jsv_C 66 LVEKKEYLQEQLEQLQRE 83 (94)
T ss_dssp HHHTTSHHHHHHHHHHHT
T ss_pred HHhHHHHHHHHHHHHHHH
Confidence 333344444555555443
No 148
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=40.97 E-value=75 Score=31.67 Aligned_cols=33 Identities=15% Similarity=0.365 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKE 249 (379)
Q Consensus 217 ~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~ 249 (379)
.++..+.++-+++..++++|..++.++.++|..
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~ 60 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPK 60 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566777788888888888888888887764
No 149
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=40.03 E-value=3e+02 Score=27.61 Aligned_cols=33 Identities=15% Similarity=0.063 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhhcCCCcc---eeEEeccceeeeecC
Q 016990 344 QACLLLHTMCQYFRPKFP---YPFFTSLCFLVIVDG 376 (379)
Q Consensus 344 Q~~LLL~tla~kl~~~Fq---YrLvp~gs~~~~~~~ 376 (379)
|-=.|+.+++..|-..+. ..+.-|+.|--.|++
T Consensus 184 qqKQL~qv~a~~llP~~~~q~lp~LK~~p~kd~vP~ 219 (390)
T 1deq_A 184 QQKQLEQVIAINLLPSRDIQYLPILKMSTITGPVPR 219 (390)
T ss_pred HHHHHHhhhhhccccccccccccccccccccccCCh
Confidence 333488888887766653 334444444443443
No 150
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=39.95 E-value=1.7e+02 Score=24.60 Aligned_cols=20 Identities=20% Similarity=0.415 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016990 175 RVLSDKLDKEVDDVTRDIEA 194 (379)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~ 194 (379)
|.+|+.|+.+++.+..|.+.
T Consensus 14 D~~Ie~Lkreie~lk~ele~ 33 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLEN 33 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56777777776666555444
No 151
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=39.91 E-value=54 Score=25.22 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 228 KLEAAIEETEKQNAEVNAELKELE 251 (379)
Q Consensus 228 ~L~~eLeelEkE~~~l~~el~~le 251 (379)
.|+.....+..|...|..++..|.
T Consensus 40 ~le~~~~~l~~en~~Lr~~i~~L~ 63 (70)
T 1gd2_E 40 TLKELHSSTTLENDQLRQKVRQLE 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444333
No 152
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=39.65 E-value=48 Score=24.12 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 226 ERKLEAAIEETEKQNAEVNAELKELE 251 (379)
Q Consensus 226 E~~L~~eLeelEkE~~~l~~el~~le 251 (379)
-..|..|+.+|..+.+.|.+++.++.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 153
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=39.25 E-value=3.1e+02 Score=27.49 Aligned_cols=30 Identities=13% Similarity=0.070 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016990 272 QFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (379)
Q Consensus 272 q~qL~~~~eE~~sl~~q~~~~~~qLdkLrk 301 (379)
..++..++..+.++..+++..+.++..|..
T Consensus 104 ~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 104 ENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344445555555666666666666666654
No 154
>3qfi_A Transcriptional regulator; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.71A {Enterococcus faecalis}
Probab=39.05 E-value=11 Score=36.33 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=37.6
Q ss_pred hhhHHHHH--HHHHHHHHHHHhhcCCCcc-eeEEeccceeeeec
Q 016990 335 WDEINAAW--GQACLLLHTMCQYFRPKFP-YPFFTSLCFLVIVD 375 (379)
Q Consensus 335 W~EINAAw--GQ~~LLL~tla~kl~~~Fq-YrLvp~gs~~~~~~ 375 (379)
++-||+|+ |=+.++..++.+-+|+.+. |=.|-+..|.+|||
T Consensus 76 ~~KIN~Aya~GG~~~~~~tVe~llgi~Id~Yv~vnf~gf~~iVD 119 (301)
T 3qfi_A 76 QDKLNHAYAFGGAEMAINTVQELLDIPIHHYVSINMKGLKDLID 119 (301)
T ss_dssp EEETHHHHHHHHHHHHHHHHHHHTTSCCCEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHCCCCceEEEeCHHHHHHHHH
Confidence 57899986 6789999999999999997 99999999999998
No 155
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=38.42 E-value=86 Score=22.81 Aligned_cols=21 Identities=10% Similarity=0.197 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016990 222 IEEEERKLEAAIEETEKQNAE 242 (379)
Q Consensus 222 Le~EE~~L~~eLeelEkE~~~ 242 (379)
|+.+-..|..++..|..|...
T Consensus 34 L~~~n~~L~~~i~~L~~e~~~ 54 (61)
T 1t2k_D 34 LSSLNGQLQSEVTLLRNEVAQ 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444333
No 156
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=37.53 E-value=1.4e+02 Score=23.11 Aligned_cols=32 Identities=25% Similarity=0.372 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 231 AAIEETEKQNAEVNAELKELELKSKRFKELEE 262 (379)
Q Consensus 231 ~eLeelEkE~~~l~~el~~le~e~~~L~eeEe 262 (379)
..+..+.+|.+++.+.++.++.+...+.++|.
T Consensus 4 k~v~~l~~E~eel~~klk~~~ee~~~~~eee~ 35 (71)
T 1uix_A 4 SDVANLANEKEELNNKLKEAQEQLSRLKDEEI 35 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555655555555554443
No 157
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=37.52 E-value=1.9e+02 Score=24.58 Aligned_cols=22 Identities=9% Similarity=0.027 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016990 181 LDKEVDDVTRDIEAYEACLQRL 202 (379)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~~L 202 (379)
|+.+.+.+..+...+..-...|
T Consensus 34 Lk~e~e~l~~~~~~~~~~~~eL 55 (155)
T 2oto_A 34 LKARLENAMEVAGRDFKRAEEL 55 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHH
Confidence 5555555554444444433333
No 158
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=37.10 E-value=3.8e+02 Score=27.92 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 016990 279 QEERDAISSKIEVSQA 294 (379)
Q Consensus 279 ~eE~~sl~~q~~~~~~ 294 (379)
+++...+.+++...+.
T Consensus 566 ~~~~~~~~~ei~~l~~ 581 (592)
T 1f5n_A 566 QKESRIMKNEIQDLQT 581 (592)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444333
No 159
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=36.15 E-value=40 Score=25.93 Aligned_cols=28 Identities=14% Similarity=0.360 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 221 KIEEEERKLEAAIEETEKQNAEVNAELK 248 (379)
Q Consensus 221 ~Le~EE~~L~~eLeelEkE~~~l~~el~ 248 (379)
.|+.+...|..++++|..+...+.+++.
T Consensus 51 ~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 51 YMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555544
No 160
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=36.12 E-value=46 Score=25.89 Aligned_cols=28 Identities=21% Similarity=0.496 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 221 KIEEEERKLEAAIEETEKQNAEVNAELK 248 (379)
Q Consensus 221 ~Le~EE~~L~~eLeelEkE~~~l~~el~ 248 (379)
.|+.++.++..+++.|..+...|.+++.
T Consensus 51 ~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 51 KLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666666666666666655544
No 161
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=35.82 E-value=24 Score=35.33 Aligned_cols=90 Identities=13% Similarity=0.261 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 293 (379)
Q Consensus 214 ~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~ 293 (379)
++..++..+.++-+++..++++|..++.++.++|..++...++. +....+...+.-++.+++++...++.++...
T Consensus 27 ~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 101 (425)
T 2dq3_A 27 SLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDT----TEIQNRVKELKEEIDRLEEELRKVEEELKNT- 101 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCT----TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 34566777888888899999999999988888887654322110 1122233334444444444444444443222
Q ss_pred HHHHHHhccccccCceeee
Q 016990 294 AHLELLKRTNVLNDAFPIW 312 (379)
Q Consensus 294 ~qLdkLrkTNV~nd~F~I~ 312 (379)
.|+=-|+.++.=.++
T Consensus 102 ----~~~ipN~~~~~vp~g 116 (425)
T 2dq3_A 102 ----LLWIPNLPHPSVPVG 116 (425)
T ss_dssp ----HHTSCCCCCTTSCCC
T ss_pred ----HHhCCCCCCCCCCCC
Confidence 234456666554444
No 162
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=35.52 E-value=1.5e+02 Score=22.91 Aligned_cols=26 Identities=23% Similarity=0.417 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 229 LEAAIEETEKQNAEVNAELKELELKS 254 (379)
Q Consensus 229 L~~eLeelEkE~~~l~~el~~le~e~ 254 (379)
+.+.|+++|.+...++..+..++...
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~L 30 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRL 30 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45566666666666666666665543
No 163
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=35.46 E-value=2.9e+02 Score=28.24 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 219 KLKIEEEERKLEAAIEETEKQNAE 242 (379)
Q Consensus 219 l~~Le~EE~~L~~eLeelEkE~~~ 242 (379)
..++..+.+.|.++..++.++..+
T Consensus 79 ~r~~~~~~~~l~~~rn~~sk~i~~ 102 (501)
T 1wle_A 79 LRQLREQIRSLEEEKEAVTEAVRA 102 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555544444443
No 164
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=35.39 E-value=1.1e+02 Score=22.52 Aligned_cols=19 Identities=26% Similarity=0.459 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016990 222 IEEEERKLEAAIEETEKQN 240 (379)
Q Consensus 222 Le~EE~~L~~eLeelEkE~ 240 (379)
|+.+-..|..++..|..+.
T Consensus 35 L~~~n~~L~~ei~~L~~e~ 53 (63)
T 2wt7_A 35 LEDEKSALQTEIANLLKEK 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 165
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=35.14 E-value=46 Score=26.48 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016990 178 SDKLDKEVDDVTRDIEAYEACLQRLE 203 (379)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (379)
+..|+..++.+++||+-|-.-|+.++
T Consensus 10 i~eLk~~ve~lEkERDFYF~KLRdIE 35 (82)
T 3tq7_B 10 LVDLKLTVDGLEKERDFYFSKLRDIE 35 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999998876
No 166
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=34.73 E-value=1.4e+02 Score=28.17 Aligned_cols=47 Identities=21% Similarity=0.261 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 016990 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQ-EFN 269 (379)
Q Consensus 221 ~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~-e~n 269 (379)
++++...++..++.++++++.++++++.+++....-++.+ ..|. .++
T Consensus 96 ~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L--~p~~~~ld 143 (357)
T 3rrk_A 96 EAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKL--AALAHGLD 143 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--hhhhccCC
Confidence 3445556666677777777777777777776653223333 3566 444
No 167
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=34.62 E-value=56 Score=25.77 Aligned_cols=31 Identities=26% Similarity=0.432 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 220 LKIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (379)
Q Consensus 220 ~~Le~EE~~L~~eLeelEkE~~~l~~el~~l 250 (379)
..|+.++..+..+++.|..+...|.++|.+|
T Consensus 55 ~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 55 LSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4466666777777777777776666666554
No 168
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=34.37 E-value=2e+02 Score=23.83 Aligned_cols=27 Identities=11% Similarity=0.145 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 226 ERKLEAAIEETEKQNAEVNAELKELEL 252 (379)
Q Consensus 226 E~~L~~eLeelEkE~~~l~~el~~le~ 252 (379)
...|.=+++-|....+++++.+..+..
T Consensus 25 Ksal~YqVdlLKD~LEe~eE~~aql~R 51 (103)
T 4h22_A 25 KTNFMYQVDTLKDMLLELEEQLAESRR 51 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444433333333
No 169
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=33.80 E-value=2.3e+02 Score=24.40 Aligned_cols=23 Identities=9% Similarity=0.245 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 016990 181 LDKEVDDVTRDIEAYEACLQRLE 203 (379)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~~L~ 203 (379)
...+|+.+++.-+.-.+-.+.|+
T Consensus 22 a~~kLeeaek~adE~eR~~k~lE 44 (147)
T 2b9c_A 22 ALQKLEEAEKAADESERGMKVIE 44 (147)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555544444555554
No 170
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=33.36 E-value=2.5e+02 Score=24.61 Aligned_cols=17 Identities=18% Similarity=0.177 Sum_probs=8.6
Q ss_pred HHHHHHHHhccccccCc
Q 016990 292 SQAHLELLKRTNVLNDA 308 (379)
Q Consensus 292 ~~~qLdkLrkTNV~nd~ 308 (379)
....+.+|..-|-+.++
T Consensus 99 LeAE~aKLeEekQIseA 115 (146)
T 2xnx_M 99 LTIEKAKLEEEKQISDA 115 (146)
T ss_dssp HHHHHHHHGGGTTTC--
T ss_pred HHHHHHHHHHHHHHhHH
Confidence 44456666666655544
No 171
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=32.20 E-value=38 Score=21.52 Aligned_cols=10 Identities=30% Similarity=0.468 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 016990 228 KLEAAIEETE 237 (379)
Q Consensus 228 ~L~~eLeelE 237 (379)
+|.+++..||
T Consensus 11 rlkqeiaale 20 (28)
T 3ra3_B 11 RLKQEIAALE 20 (28)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 172
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=32.10 E-value=51 Score=27.46 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016990 178 SDKLDKEVDDVTRDIEAYEACLQRLE 203 (379)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (379)
+..|+..++.+++|||-|-.-|+.++
T Consensus 27 i~eLk~~ve~lEkERDFYF~KLRdIE 52 (106)
T 4e61_A 27 IEQYKGTVSTLEIEREFYFNKLRDIE 52 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577777888888888887777664
No 173
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=31.50 E-value=94 Score=25.47 Aligned_cols=21 Identities=10% Similarity=-0.021 Sum_probs=11.8
Q ss_pred HhccccccCceeeeecCCcee
Q 016990 299 LKRTNVLNDAFPIWHDGEFGT 319 (379)
Q Consensus 299 LrkTNV~nd~F~I~hdG~fGT 319 (379)
|++...|.+-.-|--..|-||
T Consensus 56 i~~i~~f~~qtviaIkAP~gT 76 (106)
T 2aze_B 56 LRSIADPAEQMVMVIKAPPET 76 (106)
T ss_dssp HHTTSCTTTEEEEEEECCTTC
T ss_pred HhcCcCCCcCeEEEEECCCCC
Confidence 455555555555655666555
No 174
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=31.49 E-value=1.8e+02 Score=22.56 Aligned_cols=19 Identities=11% Similarity=0.249 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016990 229 LEAAIEETEKQNAEVNAEL 247 (379)
Q Consensus 229 L~~eLeelEkE~~~l~~el 247 (379)
|...++.++.+.+.+..++
T Consensus 70 L~~~~e~i~~~i~~le~~~ 88 (107)
T 1fxk_A 70 LQEKLETLQLREKTIERQE 88 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 175
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.49 E-value=76 Score=31.80 Aligned_cols=7 Identities=14% Similarity=0.582 Sum_probs=5.4
Q ss_pred CCChhhH
Q 016990 332 PVEWDEI 338 (379)
Q Consensus 332 ~V~W~EI 338 (379)
.|.|+.|
T Consensus 168 ~v~~~di 174 (428)
T 4b4t_K 168 DVTYADV 174 (428)
T ss_dssp SCCGGGS
T ss_pred CCCHHHh
Confidence 4889877
No 176
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=31.24 E-value=61 Score=32.35 Aligned_cols=27 Identities=7% Similarity=-0.044 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCcceeEE
Q 016990 337 EINAAWGQACLLLHTMCQYFRPKFPYPFF 365 (379)
Q Consensus 337 EINAAwGQ~~LLL~tla~kl~~~FqYrLv 365 (379)
++.+..-.++-+...+-+++|+. ||.+
T Consensus 294 ~s~~~~~e~i~~~~~il~~LGL~--~rvv 320 (425)
T 2dq3_A 294 TSYDELEKLVKDAEEVLQLLGLP--YRVV 320 (425)
T ss_dssp GHHHHHHHHHHHHHHHHHHHTCC--EEEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCc--eEEE
Confidence 35555566666777777888876 6644
No 177
>3okz_A Putative uncharacterized protein GBS0355; structural genomics, PSI-biology; 2.70A {Streptococcus agalactiae}
Probab=31.13 E-value=13 Score=35.93 Aligned_cols=41 Identities=20% Similarity=0.239 Sum_probs=37.1
Q ss_pred hhhHHHHH--HHHHHHHHHHHhhcCCCcc-eeEEeccceeeeec
Q 016990 335 WDEINAAW--GQACLLLHTMCQYFRPKFP-YPFFTSLCFLVIVD 375 (379)
Q Consensus 335 W~EINAAw--GQ~~LLL~tla~kl~~~Fq-YrLvp~gs~~~~~~ 375 (379)
+.-||+|+ |=+.++..|+.+-+|+.+. |=.|-+..|.+|||
T Consensus 82 ~~KiN~Aya~GG~~~~~~tVe~llgi~Id~Yv~vnf~gf~~iVD 125 (306)
T 3okz_A 82 EAKLNAAYASGGAEMALMTVQDLLDINVDYFMQINMQGLVDLVN 125 (306)
T ss_dssp EEETTHHHHTTHHHHHHHHHHHHHTSCCCEEEEEEHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHCCCCCeEEEEcHHHHHHHHH
Confidence 67899986 6688999999999999997 99999999999988
No 178
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=31.07 E-value=4.4e+02 Score=26.88 Aligned_cols=14 Identities=29% Similarity=0.691 Sum_probs=10.0
Q ss_pred CCChhhHHHHHHHH
Q 016990 332 PVEWDEINAAWGQA 345 (379)
Q Consensus 332 ~V~W~EINAAwGQ~ 345 (379)
-=.|+|-=.++|..
T Consensus 268 ~R~W~~Yk~GFG~~ 281 (464)
T 1m1j_B 268 GRAWDEYKRGFGNI 281 (464)
T ss_dssp CCCHHHHHHCEECC
T ss_pred ccCHHHHHHHhCCc
Confidence 44788887777765
No 179
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=31.00 E-value=2.4e+02 Score=23.67 Aligned_cols=15 Identities=27% Similarity=0.317 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 016990 222 IEEEERKLEAAIEET 236 (379)
Q Consensus 222 Le~EE~~L~~eLeel 236 (379)
|..|...|..+|+.+
T Consensus 20 Lkreie~lk~ele~l 34 (120)
T 3i00_A 20 LYREISGLKAQLENM 34 (120)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444444
No 180
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=30.98 E-value=2.1e+02 Score=23.04 Aligned_cols=27 Identities=26% Similarity=0.291 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 264 YWQEFNNFQFQLIAHQEERDAISSKIE 290 (379)
Q Consensus 264 ~w~e~n~~q~qL~~~~eE~~sl~~q~~ 290 (379)
.|.+...+..++..+..|++.+..+|+
T Consensus 60 L~~e~~~L~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 60 LIQQVEQLKQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555544
No 181
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=30.80 E-value=2.9e+02 Score=24.58 Aligned_cols=16 Identities=13% Similarity=0.084 Sum_probs=8.8
Q ss_pred ecccccCCCCCCCCCh
Q 016990 320 INNFRLGRLPKIPVEW 335 (379)
Q Consensus 320 INgfRLGrlp~~~V~W 335 (379)
|+..+-|.-|..|+..
T Consensus 257 i~~~~tg~~~P~~~~F 272 (276)
T 2v0o_A 257 AESKGTGKERPGLIEF 272 (276)
T ss_dssp HHHHCCBSSCCCCCCC
T ss_pred HHhcCCCCCCCCCCCC
Confidence 5555566655555544
No 182
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=30.64 E-value=2.7e+02 Score=24.22 Aligned_cols=57 Identities=7% Similarity=-0.016 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQL 275 (379)
Q Consensus 219 l~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL 275 (379)
++.+.++...+.++|+.++.-.....--=+...++..+.--+|++|...-.++-..|
T Consensus 56 l~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~EL~~VceEQqfl~~QedL~~DL 112 (141)
T 3okq_A 56 LETVSKDLENAQADVLKLQEFIDTEKPHWKKTWEAELDKVCEEQQFLTLQEELILDL 112 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555556555555544444444455544444456666777666664443
No 183
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=30.10 E-value=3.2e+02 Score=24.88 Aligned_cols=20 Identities=10% Similarity=0.159 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016990 263 RYWQEFNNFQFQLIAHQEER 282 (379)
Q Consensus 263 ~~w~e~n~~q~qL~~~~eE~ 282 (379)
+|-.-.|+-+..+.++++++
T Consensus 179 KF~~lLNeKK~KIR~lq~~L 198 (213)
T 1ik9_A 179 RFILVLNEKKTKIRSLHNKL 198 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHH
Confidence 45556666666555555333
No 184
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=29.93 E-value=55 Score=31.44 Aligned_cols=7 Identities=29% Similarity=0.724 Sum_probs=4.6
Q ss_pred HHHHHHH
Q 016990 194 AYEACLQ 200 (379)
Q Consensus 194 ~Y~~fL~ 200 (379)
.|..|++
T Consensus 154 ~Y~~fl~ 160 (315)
T 2ve7_A 154 CYESFMS 160 (315)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5666766
No 185
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=29.81 E-value=2.4e+02 Score=28.87 Aligned_cols=25 Identities=16% Similarity=0.322 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 226 ERKLEAAIEETEKQNAEVNAELKEL 250 (379)
Q Consensus 226 E~~L~~eLeelEkE~~~l~~el~~l 250 (379)
-+.+..+|.++|.+..++++++..+
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~ 137 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKL 137 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666655555555443
No 186
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=29.77 E-value=34 Score=26.63 Aligned_cols=36 Identities=25% Similarity=0.346 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 226 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKELE 261 (379)
Q Consensus 226 E~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeE 261 (379)
-..+..-|.+-|...+.+..+++-|+.|+.+++..+
T Consensus 31 ~~Hl~~LL~EsEatnarL~eq~~lLK~EIRRlERnq 66 (71)
T 3bbp_D 31 ADHLNGLLRETEATNAILMEQIKLLKSEIRRLERNQ 66 (71)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhH
Confidence 334444555666666667677777776666665443
No 187
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=29.30 E-value=3e+02 Score=24.42 Aligned_cols=7 Identities=14% Similarity=0.354 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 016990 176 VLSDKLD 182 (379)
Q Consensus 176 ~Lle~Ld 182 (379)
.+.+.++
T Consensus 112 ~~~~~~~ 118 (251)
T 2fic_A 112 KIAENND 118 (251)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3334443
No 188
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=29.12 E-value=98 Score=23.73 Aligned_cols=25 Identities=40% Similarity=0.472 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 230 EAAIEETEKQNAEVNAELKELELKS 254 (379)
Q Consensus 230 ~~eLeelEkE~~~l~~el~~le~e~ 254 (379)
...+.+||.++...+++|..|+.+.
T Consensus 24 de~I~eLE~~L~~kd~eI~eLr~~L 48 (67)
T 1zxa_A 24 EERIKELEKRLSEKEEEIQELKRKL 48 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666665443
No 189
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=29.02 E-value=2e+02 Score=22.25 Aligned_cols=33 Identities=33% Similarity=0.338 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 229 LEAAIEETEKQNAEVNAELKELELKSKRFKELE 261 (379)
Q Consensus 229 L~~eLeelEkE~~~l~~el~~le~e~~~L~eeE 261 (379)
|...+..+.+|.+++.+.++.++.+...+.++|
T Consensus 4 L~k~i~~l~~E~eel~~klk~~~ee~~~~~eee 36 (71)
T 1s1c_X 4 LTKDIEILRRENEELTEKMKKAEEEYKLEKEEE 36 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666665555444
No 190
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=28.79 E-value=2.5e+02 Score=23.34 Aligned_cols=47 Identities=15% Similarity=0.266 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 227 RKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQF 273 (379)
Q Consensus 227 ~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~ 273 (379)
..|..+|..|......+...|.+++.....|+..+..---..-+|..
T Consensus 38 ~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~ 84 (111)
T 2v66_B 38 SVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQ 84 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHH
Confidence 34555555555555556666666665555555444433333333333
No 191
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=28.56 E-value=1.8e+02 Score=21.63 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (379)
Q Consensus 219 l~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~ 252 (379)
+.+|++--..|...+..||..+.+.++||..|.+
T Consensus 13 ~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~ 46 (58)
T 3a2a_A 13 LLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNK 46 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666667888888888888888777776654
No 192
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=28.33 E-value=1.1e+02 Score=28.84 Aligned_cols=34 Identities=6% Similarity=-0.054 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAE 246 (379)
Q Consensus 213 e~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~e 246 (379)
+++.+.+.++..+...+.+++.+|+.+..++.+.
T Consensus 95 ~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~ 128 (357)
T 3rrk_A 95 EEAEAVLRPVASRAEVLGKERAALEEEIQTIELF 128 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3444455556666666666666666666666666
No 193
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=28.27 E-value=89 Score=23.26 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 226 ERKLEAAIEETEKQNAEVNAELKELEL 252 (379)
Q Consensus 226 E~~L~~eLeelEkE~~~l~~el~~le~ 252 (379)
...|+.+++.|+.+...|..++..|..
T Consensus 32 ~~~Le~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555565555555555543
No 194
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=27.84 E-value=84 Score=29.79 Aligned_cols=8 Identities=25% Similarity=0.439 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 016990 233 IEETEKQN 240 (379)
Q Consensus 233 LeelEkE~ 240 (379)
+..++.+.
T Consensus 63 l~~L~arN 70 (251)
T 3m9b_A 63 IDSLAARN 70 (251)
T ss_dssp HHHHTTTH
T ss_pred HHHHHHHH
Confidence 33333333
No 195
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=27.70 E-value=2e+02 Score=26.40 Aligned_cols=31 Identities=19% Similarity=0.332 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 221 KIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (379)
Q Consensus 221 ~Le~EE~~L~~eLeelEkE~~~l~~el~~le 251 (379)
.++.+...|.+++.++.....++.++..-.+
T Consensus 63 ~l~~~l~~l~~e~~el~d~~lR~~AEfeN~R 93 (213)
T 4ani_A 63 AAKAQIAELEAKLSEMEHRYLRLYADFENFR 93 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555554444444444443
No 196
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=27.49 E-value=2.1e+02 Score=25.57 Aligned_cols=28 Identities=7% Similarity=0.114 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016990 274 QLIAHQEERDAISSKIEVSQAHLELLKR 301 (379)
Q Consensus 274 qL~~~~eE~~sl~~q~~~~~~qLdkLrk 301 (379)
++.+.+.+....+++++.++.+|+.++.
T Consensus 99 ~~~~a~~~~~~a~a~l~~a~a~l~~a~~ 126 (277)
T 2f1m_A 99 EYDQALADAQQANAAVTAAKAAVETARI 126 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445567777788888888888876653
No 197
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=27.37 E-value=3.1e+02 Score=23.95 Aligned_cols=16 Identities=25% Similarity=0.206 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 016990 221 KIEEEERKLEAAIEET 236 (379)
Q Consensus 221 ~Le~EE~~L~~eLeel 236 (379)
.++.+..+|..+...+
T Consensus 37 ~le~e~~kl~~e~~i~ 52 (146)
T 2xnx_M 37 EKELEEKKKALELAID 52 (146)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444443333
No 198
>2nqw_A CBS domain protein; PFAM03471, hemolysins, CBS domains, transporter associated D CORC_HLYC, structural genomics, PSI-2; 1.30A {Porphyromonas gingivalis} SCOP: d.145.1.4
Probab=27.04 E-value=7.2 Score=30.64 Aligned_cols=16 Identities=25% Similarity=0.409 Sum_probs=13.7
Q ss_pred CCceeeccc---ccCCCCC
Q 016990 315 GEFGTINNF---RLGRLPK 330 (379)
Q Consensus 315 G~fGTINgf---RLGrlp~ 330 (379)
+.|-||+|| +||++|.
T Consensus 44 ~~~~TlgG~i~~~lg~iP~ 62 (93)
T 2nqw_A 44 DEVDTLSGLFLEIKQELPH 62 (93)
T ss_dssp TTCSBHHHHHHHHHCSCCC
T ss_pred CCcccHHHHHHHHhCcCCC
Confidence 679999999 7888886
No 199
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=26.97 E-value=2.6e+02 Score=23.36 Aligned_cols=27 Identities=7% Similarity=0.218 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 224 EEERKLEAAIEETEKQNAEVNAELKEL 250 (379)
Q Consensus 224 ~EE~~L~~eLeelEkE~~~l~~el~~l 250 (379)
+....+.+++.+|++.++.++..+...
T Consensus 88 ~~~~~l~~~i~~L~~~~~~L~~~i~~~ 114 (142)
T 3gp4_A 88 KQRIELKNRIDVMQEALDRLDFKIDNY 114 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443333
No 200
>2o3g_A Putative protein; APC85631.1, neisseria meningitid structural genomics, PSI-2, protein structure initiative; 2.55A {Neisseria meningitidis} SCOP: d.145.1.4
Probab=26.95 E-value=12 Score=29.20 Aligned_cols=26 Identities=23% Similarity=0.491 Sum_probs=19.4
Q ss_pred ccCceeee-e--cCCceeeccc---ccCCCCC
Q 016990 305 LNDAFPIW-H--DGEFGTINNF---RLGRLPK 330 (379)
Q Consensus 305 ~nd~F~I~-h--dG~fGTINgf---RLGrlp~ 330 (379)
+|+.|.|. . ++.|-||+|| +||++|.
T Consensus 30 l~~~l~~~~l~~~~~~~Tl~G~i~~~lg~iP~ 61 (92)
T 2o3g_A 30 LAPQLNLPQQEEDADFHTVAGLIMEELQTIPD 61 (92)
T ss_dssp HTTTTTCCCCCTTCSCSBHHHHHHHHHTSCCC
T ss_pred HHHHhCCCCCCcCCCcccHHHHHHHHhCCCCC
Confidence 45666664 3 4679999999 7888886
No 201
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=26.91 E-value=9.9 Score=35.67 Aligned_cols=62 Identities=13% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQ 274 (379)
Q Consensus 213 e~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~q 274 (379)
+++.++.+.+..+.+.|.+++++++.+.+++.+++.+.+.+.....+...+..+.....+|+
T Consensus 144 ~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te~~p~~k~~~qly~~vt~i~w~ 205 (250)
T 2ve7_C 144 MEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVYVAQLYHQVSKIEWE 205 (250)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------------CTTTHHHHHHHHHHHCCEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhceee
No 202
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=26.60 E-value=1.2e+02 Score=23.32 Aligned_cols=41 Identities=27% Similarity=0.375 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEE 262 (379)
Q Consensus 221 ~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe 262 (379)
+|..+-..|..+|..+|..-.-.. ++..++.+...|+++-.
T Consensus 21 ~L~~eH~~LD~~I~~le~~~~~~~-~l~~LKk~KL~LKDeI~ 61 (76)
T 1zhc_A 21 KIFEKHNQLDDDIKTAEQQNASDA-EVSHMKKQKLKLKDEIH 61 (76)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHhHHHHH
Confidence 345556666666666665443333 55555555555554433
No 203
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=26.54 E-value=3.2e+02 Score=23.80 Aligned_cols=28 Identities=32% Similarity=0.396 Sum_probs=16.7
Q ss_pred HHHHHHHHH-hccccccCceeeeecCCceeecccccCC
Q 016990 291 VSQAHLELL-KRTNVLNDAFPIWHDGEFGTINNFRLGR 327 (379)
Q Consensus 291 ~~~~qLdkL-rkTNV~nd~F~I~hdG~fGTINgfRLGr 327 (379)
|...+.+.| .+.- +.+-+||+| |||.|.
T Consensus 71 y~e~~r~elf~k~K--------t~~l~~G~v-~~R~~~ 99 (171)
T 2p2u_A 71 FATLNKTEMFKDRK--------SLDLGFGTI-GFRLST 99 (171)
T ss_dssp HHHHTHHHHCC-----------CCBCSSCBC-CCCCCC
T ss_pred HHHHhHHHhcCCCe--------EEEeCCEEE-EEEeCC
Confidence 566666666 3221 245578887 899985
No 204
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=26.53 E-value=3.4e+02 Score=24.19 Aligned_cols=42 Identities=14% Similarity=0.149 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016990 260 LEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (379)
Q Consensus 260 eEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrk 301 (379)
-++.+-+..+.++.....++.++..++..+.....+.++++.
T Consensus 50 ~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e 91 (174)
T 2p22_A 50 FHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQ 91 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344555556666666666666777777766665555543
No 205
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=26.46 E-value=1.2e+02 Score=29.43 Aligned_cols=6 Identities=17% Similarity=0.024 Sum_probs=2.8
Q ss_pred eeEEec
Q 016990 362 YPFFTS 367 (379)
Q Consensus 362 YrLvp~ 367 (379)
|.|.|-
T Consensus 90 Y~I~p~ 95 (323)
T 1lwu_C 90 YYIKPL 95 (323)
T ss_dssp EEECCT
T ss_pred EEEecC
Confidence 444443
No 206
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=26.08 E-value=10 Score=28.94 Aligned_cols=21 Identities=19% Similarity=0.529 Sum_probs=15.6
Q ss_pred CCCccccCCCCCceecccCCcc
Q 016990 9 KGRTLSVDPNVPRWVCQNCRHF 30 (379)
Q Consensus 9 ~~~~~~~~~~~~~~~Cq~C~~~ 30 (379)
+|.+..+ |++|.|.|+.|--.
T Consensus 25 ~G~~~~I-~~Vp~~~C~~CGE~ 45 (78)
T 3ga8_A 25 RGRKTVL-KGIHGLYCVHCEES 45 (78)
T ss_dssp TTEEEEE-EEEEEEEETTTCCE
T ss_pred CCEEEEE-cCceeEECCCCCCE
Confidence 5566555 78899999999654
No 207
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=26.04 E-value=2.9e+02 Score=23.15 Aligned_cols=36 Identities=22% Similarity=0.321 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (379)
Q Consensus 220 ~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~ 255 (379)
.-++...+.+...++.+++..+.+.+++..++....
T Consensus 101 ~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~ 136 (151)
T 2zdi_C 101 SFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQ 136 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555666666666666666666655554443
No 208
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=25.86 E-value=4.1e+02 Score=24.80 Aligned_cols=74 Identities=20% Similarity=0.164 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Q 016990 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLE------AAIEETEKQNAEVNAELKELE 251 (379)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~el~~Le~EE~~L~------~eLeelEkE~~~l~~el~~le 251 (379)
+.++-...+.--.-.+.|...||.+..... +-........++..+..+|. ..|..||+|+...+++..-.|
T Consensus 75 l~e~ge~e~~~a~~~d~yR~~LK~IR~~E~---svqp~R~~R~~l~~~I~kLk~k~P~s~kl~~LeqELvraEae~lvaE 151 (234)
T 3plt_A 75 IYELGELQDQFIDKYDQYRVTLKSIRNIEA---SVQPSRDRKEKITDEIAHLKYKDPQSTKIPVLEQELVRAEAESLVAE 151 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHhhHHH
Confidence 333333334444455668888888764211 01112222333444444443 345666666665555554444
Q ss_pred HHH
Q 016990 252 LKS 254 (379)
Q Consensus 252 ~e~ 254 (379)
++.
T Consensus 152 AqL 154 (234)
T 3plt_A 152 AQL 154 (234)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 209
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=25.86 E-value=2.9e+02 Score=23.05 Aligned_cols=15 Identities=20% Similarity=0.419 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 016990 237 EKQNAEVNAELKELE 251 (379)
Q Consensus 237 EkE~~~l~~el~~le 251 (379)
+...+++++++.+++
T Consensus 87 ~~~~~~l~~~i~~L~ 101 (142)
T 3gp4_A 87 KKQRIELKNRIDVMQ 101 (142)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333433333
No 210
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=25.80 E-value=2.9e+02 Score=23.04 Aligned_cols=23 Identities=9% Similarity=0.299 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016990 178 SDKLDKEVDDVTRDIEAYEACLQ 200 (379)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~ 200 (379)
+.+|+.++..+..+++.-..|++
T Consensus 15 ~~ql~~qL~k~~~~r~~Le~~w~ 37 (112)
T 1x79_B 15 LRQANDQLEKTMKDKQELEDFIK 37 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666555554
No 211
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=25.59 E-value=68 Score=25.73 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 228 KLEAAIEETEKQNAEVNAELKELELKS 254 (379)
Q Consensus 228 ~L~~eLeelEkE~~~l~~el~~le~e~ 254 (379)
.|.+++..|+.+..++.+++..++.+.
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a~L 31 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALAKL 31 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555555443
No 212
>3pe5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.38A {Clostridium leptum}
Probab=25.51 E-value=34 Score=34.44 Aligned_cols=41 Identities=24% Similarity=0.297 Sum_probs=37.1
Q ss_pred hhhHHHHH--HHHHHHHHHHHhhcCCCcc-eeEEeccceeeeec
Q 016990 335 WDEINAAW--GQACLLLHTMCQYFRPKFP-YPFFTSLCFLVIVD 375 (379)
Q Consensus 335 W~EINAAw--GQ~~LLL~tla~kl~~~Fq-YrLvp~gs~~~~~~ 375 (379)
++-||+|+ |=.-++..|+.+-+|+.+. |=.|-+..|.+|||
T Consensus 161 ~~KINaAYa~GG~~l~v~TVe~llgI~ID~Yv~Vnf~gF~~iVD 204 (403)
T 3pe5_A 161 DTKLTHAYSYGGPALAIETIERNFGIDIDRYAVVYFDTFPGIVD 204 (403)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHCBCCCEEEEEEGGGHHHHHH
T ss_pred cHHHHHHHHccCHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHH
Confidence 47899986 5589999999999999997 99999999999998
No 213
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=25.42 E-value=2.8e+02 Score=22.67 Aligned_cols=25 Identities=16% Similarity=0.470 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 016990 179 DKLDKEVDDVTRDIEAYEACLQRLE 203 (379)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (379)
+.+..++..++.+...+..-+.+|.
T Consensus 8 e~lre~l~~le~~~~~~~~e~~~L~ 32 (97)
T 2eqb_B 8 NQLKEDYNTLKRELSDRDDEVKRLR 32 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4566666666666666665555554
No 214
>4de9_A Putative transcriptional regulator YWTF; possible role in WALL techoic acid synthesis, membrane prote; HET: VTP; 1.79A {Bacillus subtilis} PDB: 3mej_A*
Probab=24.99 E-value=19 Score=34.31 Aligned_cols=42 Identities=17% Similarity=0.136 Sum_probs=36.8
Q ss_pred ChhhHHHHH--HHHHHHHHHHHhhcCCCcc-eeEEeccceeeeec
Q 016990 334 EWDEINAAW--GQACLLLHTMCQYFRPKFP-YPFFTSLCFLVIVD 375 (379)
Q Consensus 334 ~W~EINAAw--GQ~~LLL~tla~kl~~~Fq-YrLvp~gs~~~~~~ 375 (379)
.++-||+|+ |=+.++..|+.+-+|+.+. |=.|-+..|.+|||
T Consensus 84 ~~~Kin~Ay~~GG~~~~~~tVe~llgi~Id~Yv~vn~~gf~~ivD 128 (286)
T 4de9_A 84 GYDKFTHAHAYGGVDLTVKTVEEMLDIPVDYVVESNFTAFEDVVN 128 (286)
T ss_dssp EEEETTHHHHHHHHHHHHHHHHHHHCSCCCEEEEEEHHHHHHHHH
T ss_pred chHHHHHHHHcCCHHHHHHHHHHHhCCCCceEEEECHHHHHHHHH
Confidence 467899987 4478999999999999997 99999999999988
No 215
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=24.65 E-value=2.7e+02 Score=22.23 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 229 LEAAIEETEKQNAEVNAELKELELKSKRF 257 (379)
Q Consensus 229 L~~eLeelEkE~~~l~~el~~le~e~~~L 257 (379)
+..+|..-.++.+.++.+|...+..+..|
T Consensus 49 l~~el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 49 KENEISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444455555555554444443333
No 216
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=24.43 E-value=2.2e+02 Score=27.73 Aligned_cols=63 Identities=30% Similarity=0.263 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCceeeeecCC-----ceeecccccCCCCCCCCChhhHHHH
Q 016990 278 HQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGE-----FGTINNFRLGRLPKIPVEWDEINAA 341 (379)
Q Consensus 278 ~~eE~~sl~~q~~~~~~qLdkLrkTNV~nd~F~I~hdG~-----fGTINgfRLGrlp~~~V~W~EINAA 341 (379)
++++.++.+.++..+..-++.=-..-++..++.|.+.+. -|+.+-+| ...|+.-+-|.-|.-|
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~g~~~~lAgal~~~~~~~~~y~y~gs~~~~~-~~~~~~ll~w~~i~~A 353 (426)
T 1lrz_A 286 LQQQLDANEQKIEEGKRLQEEHGNELPISAGFFFINPFEVVYYAGGTSNAFR-HFAGSYAVQWEMINYA 353 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSEEEEEEEEEEECSSCEEEEEEEECGGGG-GGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcceeEEEEEEEECCEEEEEecCchhhHh-hcCCcHHHHHHHHHHH
Confidence 344444444444443332222111246788888876642 23444444 1123334455555443
No 217
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=24.35 E-value=1.5e+02 Score=23.10 Aligned_cols=29 Identities=14% Similarity=0.354 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 216 LKEKLKIEEEERKLEAAIEETEKQNAEVN 244 (379)
Q Consensus 216 ~~el~~Le~EE~~L~~eLeelEkE~~~l~ 244 (379)
......|+.|-..|..+++.|++|...|.
T Consensus 42 ~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 42 QHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555555555554443
No 218
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=24.32 E-value=1.7e+02 Score=20.54 Aligned_cols=22 Identities=23% Similarity=0.364 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016990 230 EAAIEETEKQNAEVNAELKELE 251 (379)
Q Consensus 230 ~~eLeelEkE~~~l~~el~~le 251 (379)
..||...|++..++...+++|+
T Consensus 15 drEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 15 DREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444
No 219
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=24.27 E-value=5.3e+02 Score=25.57 Aligned_cols=22 Identities=18% Similarity=0.025 Sum_probs=9.2
Q ss_pred ecccccCCCCCCCCChhhHHHHH
Q 016990 320 INNFRLGRLPKIPVEWDEINAAW 342 (379)
Q Consensus 320 INgfRLGrlp~~~V~W~EINAAw 342 (379)
|+..+-|--| .++...+-+..+
T Consensus 287 i~~~gtG~~~-~~p~Fe~y~~~~ 308 (486)
T 3haj_A 287 RANHGPGMAM-NWPQFEEWSADL 308 (486)
T ss_dssp HHHHSTTSCC-CCCCC-------
T ss_pred HHHhCCCCCC-CCCCceeCCchh
Confidence 6667777544 356555554433
No 220
>3tkl_B LIDA protein, substrate of the DOT/ICM system; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Legionella pneumophila}
Probab=24.18 E-value=1.5e+02 Score=27.77 Aligned_cols=42 Identities=24% Similarity=0.346 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchh--cccCCHHHHHHHH
Q 016990 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEA--RDVLSEADFLKEK 219 (379)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~--~~~~~ee~l~~el 219 (379)
++.|.+|-..++...+.|..-|....+.. .+.++.+++.+++
T Consensus 44 l~kLE~qq~~lt~KY~~Ye~sL~eF~~~sd~yeal~~e~ine~i 87 (267)
T 3tkl_B 44 LDKLERQGKDLEDKYKTYEENLEGFEKLLTDSEELSLSEINEKM 87 (267)
T ss_dssp -------------------------------CCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcCHHHHHHHH
Confidence 44555555556666667776666555432 2334455554433
No 221
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=23.80 E-value=3e+02 Score=22.43 Aligned_cols=14 Identities=29% Similarity=0.318 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 016990 228 KLEAAIEETEKQNA 241 (379)
Q Consensus 228 ~L~~eLeelEkE~~ 241 (379)
+|+.||.+|+++..
T Consensus 51 eL~~EI~~L~~eI~ 64 (96)
T 1t3j_A 51 HLEEEIARLSKEID 64 (96)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 222
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=23.79 E-value=3.6e+02 Score=23.36 Aligned_cols=40 Identities=20% Similarity=0.286 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (379)
Q Consensus 213 e~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~ 252 (379)
+.+.+....|....+.|..++..++++...+..+|+.+-.
T Consensus 10 e~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k 49 (179)
T 2gd5_A 10 ELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAK 49 (179)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566777777777777777777777777765544
No 223
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=23.60 E-value=3.7e+02 Score=23.52 Aligned_cols=22 Identities=14% Similarity=0.152 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016990 270 NFQFQLIAHQEERDAISSKIEV 291 (379)
Q Consensus 270 ~~q~qL~~~~eE~~sl~~q~~~ 291 (379)
.++.++.+...-++++..|+..
T Consensus 119 ~L~~ql~e~~~~l~~lq~ql~~ 140 (154)
T 2ocy_A 119 RLTEQLREKDTLLDTLTLQLKN 140 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 224
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=23.35 E-value=3.5e+02 Score=23.13 Aligned_cols=20 Identities=10% Similarity=0.215 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016990 178 SDKLDKEVDDVTRDIEAYEA 197 (379)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~ 197 (379)
.+.|+++-++...|+..|.+
T Consensus 28 ~e~l~kE~e~k~eeKkkiLa 47 (133)
T 1j1d_C 28 KQELEREAEERRGEKGRALS 47 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777754
No 225
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=23.32 E-value=4e+02 Score=23.71 Aligned_cols=51 Identities=18% Similarity=0.375 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 227 RKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDA 284 (379)
Q Consensus 227 ~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~s 284 (379)
+.|...|.+++.....|.++|+...+....++ ++.|+++=++..+...++.
T Consensus 99 e~LksRL~~l~~sk~~L~e~L~~q~~~~relE-------RemnsLKPeL~qL~K~rD~ 149 (170)
T 3l4q_C 99 ERLKSRIAEIHESRTKLEQELRAQASDNREID-------KRMNSLKPDLMQLRKIRDQ 149 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhcCHHHHHHHHHHHH
Confidence 35666777777777777776666555443333 5678888888877777765
No 226
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=23.30 E-value=3.6e+02 Score=23.29 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 214 DFLKEKLKIEEEERKLEAAIEETEK 238 (379)
Q Consensus 214 ~l~~el~~Le~EE~~L~~eLeelEk 238 (379)
.|..+..+|+.+|+++..+|...-+
T Consensus 25 ~Ldr~~~kle~~ekk~~~~Ikka~k 49 (179)
T 2gd5_A 25 VVDRQIRDIQREEEKVKRSVKDAAK 49 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566677777777777665543
No 227
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=22.95 E-value=2.2e+02 Score=20.59 Aligned_cols=31 Identities=26% Similarity=0.356 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 228 KLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (379)
Q Consensus 228 ~L~~eLeelEkE~~~l~~el~~le~e~~~L~ 258 (379)
.|..++..|.+..++|.+.+.+...++..|.
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lk 43 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALR 43 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555444444444443
No 228
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=22.90 E-value=1.5e+02 Score=28.82 Aligned_cols=9 Identities=22% Similarity=0.150 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 016990 194 AYEACLQRL 202 (379)
Q Consensus 194 ~Y~~fL~~L 202 (379)
.|+..++.+
T Consensus 224 yf~~l~~~~ 232 (426)
T 1lrz_A 224 FYYNRLKYY 232 (426)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 344444433
No 229
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=22.79 E-value=47 Score=32.38 Aligned_cols=14 Identities=14% Similarity=0.513 Sum_probs=10.4
Q ss_pred CCChhhHHHHHHHH
Q 016990 332 PVEWDEINAAWGQA 345 (379)
Q Consensus 332 ~V~W~EINAAwGQ~ 345 (379)
.=.|.|-=.++|..
T Consensus 118 ~R~W~~Yk~GFG~~ 131 (319)
T 1fzc_C 118 KKNWIQYKEGFGHL 131 (319)
T ss_dssp CCCHHHHHHCEEEE
T ss_pred ecCHHHHhHhhCCc
Confidence 34788888888875
No 230
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=22.69 E-value=3.8e+02 Score=23.31 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016990 229 LEAAIEETEKQNAEVNAELKELE 251 (379)
Q Consensus 229 L~~eLeelEkE~~~l~~el~~le 251 (379)
+.+.+..++.|+++|+-+.+.+.
T Consensus 34 l~~~i~q~d~elqQLefq~kr~~ 56 (150)
T 4dci_A 34 ISNGIANADQQLAQLEQEGQTVV 56 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455444444444443
No 231
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=22.60 E-value=1.4e+02 Score=22.08 Aligned_cols=26 Identities=15% Similarity=0.109 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 230 EAAIEETEKQNAEVNAELKELELKSK 255 (379)
Q Consensus 230 ~~eLeelEkE~~~l~~el~~le~e~~ 255 (379)
.+.+.+||.+.+.|..+-..|..+..
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~ 54 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVA 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555444444444333
No 232
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=22.31 E-value=2.4e+02 Score=26.10 Aligned_cols=13 Identities=15% Similarity=0.332 Sum_probs=6.3
Q ss_pred HHHHHHHHHhccc
Q 016990 291 VSQAHLELLKRTN 303 (379)
Q Consensus 291 ~~~~qLdkLrkTN 303 (379)
|.+.-.|-|.+.|
T Consensus 165 YkqvcsDiInkMn 177 (294)
T 3caz_A 165 YSSVCADLIQKME 177 (294)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444455555554
No 233
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=22.31 E-value=3.4e+02 Score=22.57 Aligned_cols=16 Identities=25% Similarity=0.297 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 016990 229 LEAAIEETEKQNAEVN 244 (379)
Q Consensus 229 L~~eLeelEkE~~~l~ 244 (379)
|..||...|+++....
T Consensus 40 LQ~Ei~~~E~QL~iAr 55 (107)
T 2k48_A 40 LQENITAHEQQLVTAR 55 (107)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444333
No 234
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=21.82 E-value=4.2e+02 Score=32.91 Aligned_cols=62 Identities=16% Similarity=0.317 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhch--------hcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 180 KLDKEVDDVTRDIEAYEACLQRLEGE--------ARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNA 241 (379)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~L~~~--------~~~~~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~ 241 (379)
.|+++-.++.++...|+.-|+.|+.+ ..+.++++++.+-|...+.+-.+..+++++.+....
T Consensus 2143 dLE~~r~~Li~~~~~~k~~Lk~lEd~lL~~Ls~s~GniLdd~~lI~~L~~sK~~a~eI~~kl~~a~~t~~ 2212 (2695)
T 4akg_A 2143 EMQRKREDLIKLNTEYKLKLKNLEKRLLEELNNSQGNMLENDELMVTLNNLKKEAMNIEKKLSESEEFFP 2212 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666667777777788888877654 235566777766555554444444444444444333
No 235
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=21.60 E-value=2.5e+02 Score=27.66 Aligned_cols=36 Identities=25% Similarity=0.296 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 236 TEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQ 274 (379)
Q Consensus 236 lEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~q 274 (379)
+++|.+.++.++++++.++ ...|..|=..|+.++.+
T Consensus 8 ~~~e~~~~~~~~~~vq~kA---~~~E~~Yn~~~dKmeqE 43 (333)
T 4etp_B 8 LEKEIAALEKEIAALEKEI---SKQEKFYNDTYNTVCKE 43 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3334444444444444332 23344455556655554
No 236
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=21.53 E-value=3.1e+02 Score=21.83 Aligned_cols=54 Identities=20% Similarity=0.304 Sum_probs=0.0
Q ss_pred HHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 196 EACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (379)
Q Consensus 196 ~~fL~~L~~~~~~~~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le 251 (379)
..|.+.|-.+.+.++ .+.+.|-.+|-++...|..++..+.++..++..-...++
T Consensus 27 e~YWk~lAE~RR~AL--~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~q 80 (83)
T 1uii_A 27 SQYWKEVAEKRRKAL--YEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQ 80 (83)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 237
>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A
Probab=20.92 E-value=5e+02 Score=24.02 Aligned_cols=108 Identities=17% Similarity=0.206 Sum_probs=53.2
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-H
Q 016990 166 EQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQN-AE-V 243 (379)
Q Consensus 166 DhPLC~ECtd~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~el~~Le~EE~~L~~eLeelEkE~-~~-l 243 (379)
-+|.-.+=. .+-..+.+.+..+..=-.+|...+.++...........++-.-+.++-..-+.++..++..-+.. .. +
T Consensus 27 ~~P~~e~li-~~~~kY~~al~~~~~a~~~f~dal~kia~~A~~s~gs~elG~~L~~i~~~~r~ie~~l~~~~~~~~~~li 105 (253)
T 2ykt_A 27 FNPSLRNFI-AMGKNYEKALAGVTYAAKGYFDALVKMGELASESQGSKELGDVLFQMAEVHRQIQNQLEEMLKSFHNELL 105 (253)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTH
T ss_pred CCccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455444322 22345777788887777888888888765432221224443333333333333444433332221 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 244 NAELKELELKSKRFKELEERYWQEFNNFQFQ 274 (379)
Q Consensus 244 ~~el~~le~e~~~L~eeEe~~w~e~n~~q~q 274 (379)
.---..++...+.+...++.|+++|....-.
T Consensus 106 ~pL~~kie~d~K~v~~~~K~~~~e~k~~~~~ 136 (253)
T 2ykt_A 106 TQLEQKVELDSRYLSAALKKYQTEQRSKGDA 136 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhHhH
Confidence 0011233334456667777777777655443
No 238
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=20.91 E-value=1.4e+02 Score=18.77 Aligned_cols=7 Identities=29% Similarity=0.249 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 016990 216 LKEKLKI 222 (379)
Q Consensus 216 ~~el~~L 222 (379)
.+|++.|
T Consensus 7 ykeledl 13 (27)
T 3twe_A 7 YKELEDL 13 (27)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 239
>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A
Probab=20.75 E-value=28 Score=28.15 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=16.2
Q ss_pred eecccccCCCCCCCCChhhHHHHHHHH
Q 016990 319 TINNFRLGRLPKIPVEWDEINAAWGQA 345 (379)
Q Consensus 319 TINgfRLGrlp~~~V~W~EINAAwGQ~ 345 (379)
.|.|||-|. |+=+-|..-.|..
T Consensus 40 ~ipGFRkGK-----vP~~vi~k~yG~~ 61 (109)
T 2nsc_A 40 EIPGFRKGR-----IPKNVLKMKLGEE 61 (109)
T ss_dssp CCTTSCTTC-----CCHHHHHHHHGGG
T ss_pred CCCCcCCCC-----CCHHHHHHHHhHH
Confidence 489999997 5556677777743
No 240
>3tnf_B LIDA, RAS-related protein RAB-8A; protein transport, vesicular trafficking, GTPase, vesicle recuitment, LCV, DRRA, SIDM; HET: GNP; 2.50A {Legionella pneumophila subsp}
Probab=20.43 E-value=2.8e+02 Score=27.13 Aligned_cols=47 Identities=21% Similarity=0.267 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchh--cccCCHHHHHHHHHHH
Q 016990 176 VLSDKLDKEVDDVTRDIEAYEACLQRLEGEA--RDVLSEADFLKEKLKI 222 (379)
Q Consensus 176 ~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~--~~~~~ee~l~~el~~L 222 (379)
.=++.|.+|-..++...+.|..-|....+.. ...++.+++.+++.++
T Consensus 25 ~rl~kLE~qq~~lt~KY~~Ye~sL~eF~~~sd~yeal~~e~ine~ie~l 73 (384)
T 3tnf_B 25 KKLDKLERQGKDLEDKYKTYEENLEGFEKLLTDSEELSLSEINEKMEAF 73 (384)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHTSHHHHTTCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhHHHHHHhcchhhhcCHHHHHHHHHHH
Confidence 3455666666667777777777777555432 2344555555443333
No 241
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=20.36 E-value=95 Score=25.22 Aligned_cols=17 Identities=24% Similarity=0.520 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016990 179 DKLDKEVDDVTRDIEAY 195 (379)
Q Consensus 179 e~Ld~qle~~~~E~d~Y 195 (379)
+.++.+|+.+..|...|
T Consensus 17 D~ir~Efe~~~~e~~~~ 33 (92)
T 3vp9_A 17 DAIRQEFLQVSQEANTY 33 (92)
T ss_dssp CCTTTTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 242
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=20.25 E-value=1.9e+02 Score=24.84 Aligned_cols=27 Identities=15% Similarity=0.112 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 016990 226 ERKLEAAIEETEK-QNAEVNAELKELEL 252 (379)
Q Consensus 226 E~~L~~eLeelEk-E~~~l~~el~~le~ 252 (379)
.++|++||+.|.. ++.++.+.+.++..
T Consensus 11 ~~~L~~EL~~L~~~~R~~i~~~i~~Ar~ 38 (158)
T 2p4v_A 11 YEKLKQELNYLWREERPEVTKKVTWAAS 38 (158)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 3456677777743 66667767665554
No 243
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=20.23 E-value=3.3e+02 Score=21.70 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 232 AIEETEKQNAEVNAELKELELKSKRF 257 (379)
Q Consensus 232 eLeelEkE~~~l~~el~~le~e~~~L 257 (379)
.|.++|...++.++-|.+.+.|...+
T Consensus 50 ~i~~ie~~ldEA~eLl~qMelE~r~~ 75 (102)
T 2qyw_A 50 LVRDFDEKQQEANETLAEMEEELRYA 75 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35555555555555555555554444
No 244
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=20.23 E-value=3e+02 Score=21.14 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016990 227 RKLEAAIEETEKQNAEVNAEL 247 (379)
Q Consensus 227 ~~L~~eLeelEkE~~~l~~el 247 (379)
+.+...|..+|.++.++.+++
T Consensus 8 ~~~~~~i~~lE~eL~~~r~e~ 28 (74)
T 2xv5_A 8 DTSRRLLAEKEREMAEMRARM 28 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444443333
No 245
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=20.14 E-value=6.7e+02 Score=25.17 Aligned_cols=14 Identities=14% Similarity=0.513 Sum_probs=9.4
Q ss_pred CCChhhHHHHHHHH
Q 016990 332 PVEWDEINAAWGQA 345 (379)
Q Consensus 332 ~V~W~EINAAwGQ~ 345 (379)
.=.|.|-=.++|..
T Consensus 205 ~R~W~eYk~GFG~l 218 (411)
T 3ghg_C 205 KKNWIQYKEGFGHL 218 (411)
T ss_dssp CCCHHHHHHCEEEE
T ss_pred cCCHHHHhcccCCc
Confidence 34688777777754
Done!