Query 016990
Match_columns 379
No_of_seqs 147 out of 226
Neff 4.6
Searched_HMMs 13730
Date Mon Mar 25 07:08:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016990.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016990hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2efka1 a.238.1.4 (A:10-288) C 73.5 23 0.0017 29.3 15.2 20 184-203 96-115 (279)
2 d1fxkc_ a.2.5.1 (C:) Prefoldin 63.9 23 0.0016 27.2 9.5 26 178-203 17-42 (133)
3 d1fxka_ a.2.5.1 (A:) Prefoldin 63.7 22 0.0016 26.7 9.2 30 223-252 71-100 (107)
4 d1fxka_ a.2.5.1 (A:) Prefoldin 54.8 38 0.0028 25.3 10.7 33 218-250 9-41 (107)
5 d1lrza1 a.2.7.4 (A:245-309) Me 54.2 26 0.0019 24.9 7.4 14 280-293 44-57 (65)
6 d1seta1 a.2.7.1 (A:1-110) Sery 53.8 39 0.0029 25.2 10.9 22 181-202 33-54 (110)
7 d1qvra2 c.37.1.20 (A:149-535) 51.2 41 0.003 30.8 10.4 23 164-187 180-202 (387)
8 d2efla1 a.238.1.4 (A:1-288) Fo 51.1 61 0.0044 26.5 15.5 23 181-203 102-124 (288)
9 d2azeb1 e.63.1.2 (B:201-301) T 50.8 13 0.00093 28.6 5.6 31 228-258 5-35 (101)
10 d1qvra2 c.37.1.20 (A:149-535) 49.4 30 0.0022 31.8 9.1 13 24-36 39-51 (387)
11 d2efka1 a.238.1.4 (A:10-288) C 48.8 65 0.0048 26.2 15.5 9 321-329 261-269 (279)
12 d1wu9a1 a.245.1.1 (A:191-249) 47.9 11 0.00083 26.5 4.4 26 178-203 10-35 (59)
13 d1seta1 a.2.7.1 (A:1-110) Sery 42.7 60 0.0044 24.1 11.2 67 217-289 28-94 (110)
14 d2azeb1 e.63.1.2 (B:201-301) T 39.2 28 0.0021 26.5 5.9 21 299-319 51-71 (101)
15 d1ykhb1 a.252.1.1 (B:2-130) RN 39.0 83 0.006 24.6 9.7 28 212-239 86-113 (129)
16 d1ivsa1 a.2.7.3 (A:797-862) Va 38.7 39 0.0028 23.2 6.2 21 224-244 4-24 (66)
17 d1nkpa_ a.38.1.1 (A:) Myc prot 33.9 35 0.0026 24.6 5.5 28 221-248 56-83 (88)
18 d2fupa1 a.47.5.1 (A:1-130) Hyp 32.8 92 0.0067 23.3 12.2 59 187-247 10-68 (130)
19 d2p4pa1 d.145.1.4 (A:1-82) Hyp 29.9 3 0.00022 30.5 -1.4 25 306-330 20-50 (82)
20 d1urua_ a.238.1.1 (A:) Amphiph 27.4 1.3E+02 0.0095 23.3 11.7 24 179-202 22-45 (217)
21 d1ivsa1 a.2.7.3 (A:797-862) Va 25.4 94 0.0068 21.0 7.5 22 182-203 3-24 (66)
22 d2inca1 a.25.1.2 (A:2-492) Tol 24.1 14 0.001 35.6 1.9 21 13-34 386-406 (491)
23 d3deda1 d.145.1.4 (A:341-427) 24.0 4.2 0.00031 29.9 -1.5 18 313-330 36-56 (87)
24 d2cupa3 g.39.1.3 (A:8-34) Four 23.3 13 0.00096 22.2 1.0 14 24-40 1-14 (27)
25 d2e50a1 d.305.1.1 (A:1-222) Pr 22.8 1.6E+02 0.012 24.5 8.7 13 292-304 100-112 (222)
26 d1nkpb_ a.38.1.1 (B:) Max prot 22.5 46 0.0033 23.6 4.2 28 221-248 51-78 (83)
27 d1fxkc_ a.2.5.1 (C:) Prefoldin 22.4 1.5E+02 0.011 22.2 13.8 31 269-299 98-128 (133)
28 d1ez3a_ a.47.2.1 (A:) Syntaxin 22.1 1.4E+02 0.011 22.0 8.0 28 213-240 6-33 (124)
29 d1vf7a_ f.46.1.1 (A:) Multidru 20.6 1.3E+02 0.0092 23.8 7.2 25 274-298 85-109 (237)
30 d1bjta_ e.11.1.1 (A:) DNA topo 20.3 78 0.0057 31.6 6.8 11 13-23 355-365 (760)
31 d2ap3a1 a.24.27.1 (A:12-196) H 20.1 1.4E+02 0.011 21.2 12.8 127 174-301 53-179 (185)
No 1
>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=73.47 E-value=23 Score=29.28 Aligned_cols=20 Identities=5% Similarity=-0.049 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 016990 184 EVDDVTRDIEAYEACLQRLE 203 (379)
Q Consensus 184 qle~~~~E~d~Y~~fL~~L~ 203 (379)
-+.+.+..++.+....+++.
T Consensus 96 ~~~~~~~~~k~~~~~~~~~~ 115 (279)
T d2efka1 96 YSQEMKQERKMHFQEGRRAQ 115 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444443
No 2
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=63.92 E-value=23 Score=27.21 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016990 178 SDKLDKEVDDVTRDIEAYEACLQRLE 203 (379)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (379)
++.|+.+++.++.....|....+.|+
T Consensus 17 l~~l~~~i~~l~~~~~e~~~~~~~L~ 42 (133)
T d1fxkc_ 17 VELIQQQMEAVRATISELEILEKTLS 42 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666665555443
No 3
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=63.67 E-value=22 Score=26.69 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 223 EEEERKLEAAIEETEKQNAEVNAELKELEL 252 (379)
Q Consensus 223 e~EE~~L~~eLeelEkE~~~l~~el~~le~ 252 (379)
+.....+..+++.++++...+..++.+++.
T Consensus 71 ~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~ 100 (107)
T d1fxka_ 71 QEKLETLQLREKTIERQEERVMKKLQEMQV 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555444444443
No 4
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=54.76 E-value=38 Score=25.27 Aligned_cols=33 Identities=18% Similarity=0.286 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (379)
Q Consensus 218 el~~Le~EE~~L~~eLeelEkE~~~l~~el~~l 250 (379)
+...+..+...+...+..++.+..+...-+.++
T Consensus 9 ~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL 41 (107)
T d1fxka_ 9 QFQQLQQQAQAISVQKQTVEMQINETQKALEEL 41 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555554444444333333
No 5
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=54.21 E-value=26 Score=24.89 Aligned_cols=14 Identities=36% Similarity=0.399 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 016990 280 EERDAISSKIEVSQ 293 (379)
Q Consensus 280 eE~~sl~~q~~~~~ 293 (379)
.++++...++..|+
T Consensus 44 ~Q~~s~~~ki~Ea~ 57 (65)
T d1lrza1 44 QQLDANEQKIEEGK 57 (65)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333334444333
No 6
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=53.83 E-value=39 Score=25.16 Aligned_cols=22 Identities=18% Similarity=0.468 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016990 181 LDKEVDDVTRDIEAYEACLQRL 202 (379)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~~L 202 (379)
|+.+...+..+.+..++--+.+
T Consensus 33 ld~~rr~l~~~~e~l~~~rN~~ 54 (110)
T d1seta1 33 LDREVQELKKRLQEVQTERNQV 54 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555444444444443333
No 7
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=51.25 E-value=41 Score=30.81 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=13.5
Q ss_pred CcCCcchHHHHHHHHHHHHHHHHH
Q 016990 164 QVEQPLCLECMRVLSDKLDKEVDD 187 (379)
Q Consensus 164 ~IDhPLC~ECtd~Lle~Ld~qle~ 187 (379)
.|+-|-=.++... +..+...|+.
T Consensus 180 ~v~ep~~~~~~~i-l~~~~~~~e~ 202 (387)
T d1qvra2 180 YVDEPTVEETISI-LRGLKEKYEV 202 (387)
T ss_dssp EECCCCHHHHHHH-HHHHHHHHHH
T ss_pred cCCCCcHHHHHHH-HHHHHHHHHh
Confidence 4666666666655 4456666553
No 8
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=51.07 E-value=61 Score=26.50 Aligned_cols=23 Identities=9% Similarity=0.114 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 016990 181 LDKEVDDVTRDIEAYEACLQRLE 203 (379)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~~L~ 203 (379)
|..-..+.++.++.+.....++.
T Consensus 102 l~~~~~~~~~~~K~~~~~~~k~~ 124 (288)
T d2efla1 102 LARYVQELKQERKSNFHDGRKAQ 124 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444443
No 9
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=50.77 E-value=13 Score=28.63 Aligned_cols=31 Identities=3% Similarity=0.129 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 228 KLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (379)
Q Consensus 228 ~L~~eLeelEkE~~~l~~el~~le~e~~~L~ 258 (379)
.|.+||+.|+.+...|++.+..+......+.
T Consensus 5 ~L~~El~~L~~~E~~LD~li~~~~~~L~~lt 35 (101)
T d2azeb1 5 GLTQDLRQLQESEQQLDHLMNICTTQLRLLS 35 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455555555555555555555554444443
No 10
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=49.40 E-value=30 Score=31.82 Aligned_cols=13 Identities=8% Similarity=0.230 Sum_probs=5.8
Q ss_pred cccCCcceEEeec
Q 016990 24 CQNCRHFLCIVGV 36 (379)
Q Consensus 24 Cq~C~~~l~i~g~ 36 (379)
|-.=++.-.+||.
T Consensus 39 ~r~~k~n~llvG~ 51 (387)
T d1qvra2 39 LRRTKNNPVLIGE 51 (387)
T ss_dssp HCSSCCCCEEEEC
T ss_pred hcCCCCCCeEECC
Confidence 3333344445554
No 11
>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.78 E-value=65 Score=26.22 Aligned_cols=9 Identities=11% Similarity=-0.009 Sum_probs=3.6
Q ss_pred cccccCCCC
Q 016990 321 NNFRLGRLP 329 (379)
Q Consensus 321 NgfRLGrlp 329 (379)
+..+.|.-|
T Consensus 261 ~~~~t~~~~ 269 (279)
T d2efka1 261 ELHKSGFAR 269 (279)
T ss_dssp HHTGGGCCC
T ss_pred HHcCCCCCC
Confidence 333444433
No 12
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=47.93 E-value=11 Score=26.49 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016990 178 SDKLDKEVDDVTRDIEAYEACLQRLE 203 (379)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (379)
+..|+..++.+++|||-|-.-|+.++
T Consensus 10 i~elk~~v~~lEkERdFYF~KLRdIE 35 (59)
T d1wu9a1 10 VNVLKLTVEDLEKERDFYFGKLRNIE 35 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56688899999999999999988776
No 13
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=42.75 E-value=60 Score=24.06 Aligned_cols=67 Identities=10% Similarity=0.160 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKI 289 (379)
Q Consensus 217 ~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~ 289 (379)
.++.++..+-+.+..+++.+..++..+..++.....+. -...-.+...+.-++..++.++..++.++
T Consensus 28 d~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i~k~~~~~------~~~l~~~~k~lk~~i~~le~~~~~~~~~l 94 (110)
T d1seta1 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEE------KEALIARGKALGEEAKRLEEALREKEARL 94 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777888888888888888888887775432211 11233344444445555554444444443
No 14
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.23 E-value=28 Score=26.51 Aligned_cols=21 Identities=10% Similarity=-0.021 Sum_probs=9.3
Q ss_pred HhccccccCceeeeecCCcee
Q 016990 299 LKRTNVLNDAFPIWHDGEFGT 319 (379)
Q Consensus 299 LrkTNV~nd~F~I~hdG~fGT 319 (379)
+++.-.|.+---|--..|-||
T Consensus 51 i~~i~~f~~~tviaIkAP~gT 71 (101)
T d2azeb1 51 LRSIADPAEQMVMVIKAPPET 71 (101)
T ss_dssp HHTTSCTTTEEEEEEECCTTC
T ss_pred HhhCCCcccceEEEEECCCCC
Confidence 344434444444444444444
No 15
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=39.00 E-value=83 Score=24.60 Aligned_cols=28 Identities=14% Similarity=0.125 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 212 EADFLKEKLKIEEEERKLEAAIEETEKQ 239 (379)
Q Consensus 212 ee~l~~el~~Le~EE~~L~~eLeelEkE 239 (379)
++.-.+.+.+|++|.....+++++.-++
T Consensus 86 ee~Q~~~i~~Le~E~~~~~~el~~~v~e 113 (129)
T d1ykhb1 86 AEEQLRKIDMLQKKLVEVEDEKIEAIKK 113 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444555544444444443333
No 16
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=38.70 E-value=39 Score=23.19 Aligned_cols=21 Identities=19% Similarity=0.151 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016990 224 EEERKLEAAIEETEKQNAEVN 244 (379)
Q Consensus 224 ~EE~~L~~eLeelEkE~~~l~ 244 (379)
.|..+|..+|+.++++...+.
T Consensus 4 ~E~~RL~K~l~kl~~~i~~~~ 24 (66)
T d1ivsa1 4 EWRRRQEKRLKELLALAERSQ 24 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 17
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.89 E-value=35 Score=24.57 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 221 KIEEEERKLEAAIEETEKQNAEVNAELK 248 (379)
Q Consensus 221 ~Le~EE~~L~~eLeelEkE~~~l~~el~ 248 (379)
.|+.+...|..+++.+.++.+.+..++.
T Consensus 56 ~L~~~~~~l~~~~~~l~~~~~~L~~~l~ 83 (88)
T d1nkpa_ 56 SVQAEEQKLISEEDLLRKRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555444443
No 18
>d2fupa1 a.47.5.1 (A:1-130) Hypothetical protein PA3352 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=32.83 E-value=92 Score=23.28 Aligned_cols=59 Identities=19% Similarity=0.184 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 187 DVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAEL 247 (379)
Q Consensus 187 ~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el 247 (379)
.+..|+..|..++.=++.+..-... -+ .+++..+-.++..+..++..++..+.++-..+
T Consensus 10 ~L~~e~~~~~~L~~LL~~e~~aL~~-~d-~~~Le~l~~~k~~ll~~l~~~~~~R~~~l~~~ 68 (130)
T d2fupa1 10 LFAEDIGHANQLLQLVDEEFQALER-RE-LPVLQQLLGAKQPLMQQLERNGRARAEILREA 68 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-TC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc-CC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455778899888877765321000 00 12455666778888888998888887766553
No 19
>d2p4pa1 d.145.1.4 (A:1-82) Hypothetical protein HD1797 {Haemophilus ducreyi [TaxId: 730]}
Probab=29.88 E-value=3 Score=30.53 Aligned_cols=25 Identities=36% Similarity=0.611 Sum_probs=18.7
Q ss_pred cCceeee---ecCCceeeccc---ccCCCCC
Q 016990 306 NDAFPIW---HDGEFGTINNF---RLGRLPK 330 (379)
Q Consensus 306 nd~F~I~---hdG~fGTINgf---RLGrlp~ 330 (379)
|+.|.|. .++.|-||+|| +||++|.
T Consensus 20 ~~~~~~~~~~~~~~~~TlgG~i~~~lg~iP~ 50 (82)
T d2p4pa1 20 MRALNIHTFPRDENYETIGGFMMYMLRKIPK 50 (82)
T ss_dssp HHHTTCCCSCCSCSSCBHHHHHHHHHCSCCC
T ss_pred HHHhCCCCCCcccCccCHHHHHHHHhCcCCC
Confidence 5566654 45789999998 6788876
No 20
>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=27.37 E-value=1.3e+02 Score=23.32 Aligned_cols=24 Identities=8% Similarity=0.450 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 179 DKLDKEVDDVTRDIEAYEACLQRL 202 (379)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~~L 202 (379)
+.++.++..+.+.+..|...++.+
T Consensus 22 ~~~e~~l~~l~k~~~~~~~~~~~~ 45 (217)
T d1urua_ 22 NRQQASANRLQKEFNNYIRCVRAA 45 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666665555543
No 21
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=25.45 E-value=94 Score=21.03 Aligned_cols=22 Identities=9% Similarity=0.074 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 016990 182 DKEVDDVTRDIEAYEACLQRLE 203 (379)
Q Consensus 182 d~qle~~~~E~d~Y~~fL~~L~ 203 (379)
+.+...++++.+.+...+.+++
T Consensus 3 ~~E~~RL~K~l~kl~~~i~~~~ 24 (66)
T d1ivsa1 3 EEWRRRQEKRLKELLALAERSQ 24 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555544
No 22
>d2inca1 a.25.1.2 (A:2-492) Toluene, o-xylene monooxygenase oxygenase subunit TouA {Pseudomonas stutzeri [TaxId: 316]}
Probab=24.06 E-value=14 Score=35.63 Aligned_cols=21 Identities=24% Similarity=0.599 Sum_probs=17.5
Q ss_pred cccCCCCCceecccCCcceEEe
Q 016990 13 LSVDPNVPRWVCQNCRHFLCIV 34 (379)
Q Consensus 13 ~~~~~~~~~~~Cq~C~~~l~i~ 34 (379)
....+.+|. .||.|+.|++++
T Consensus 386 ~~~~~~lp~-~C~~cq~P~~~~ 406 (491)
T d2inca1 386 LTVPETLPT-ICNMCNLPIAHT 406 (491)
T ss_dssp GGSCSSCBC-BCTTTCSBCBCC
T ss_pred cccCCCCCC-ccccCCCCcccC
Confidence 345678888 999999999986
No 23
>d3deda1 d.145.1.4 (A:341-427) Probable hemolysin CV0231 {Chromobacterium violaceum [TaxId: 536]}
Probab=23.96 E-value=4.2 Score=29.94 Aligned_cols=18 Identities=33% Similarity=0.708 Sum_probs=14.8
Q ss_pred ecCCceeeccc---ccCCCCC
Q 016990 313 HDGEFGTINNF---RLGRLPK 330 (379)
Q Consensus 313 hdG~fGTINgf---RLGrlp~ 330 (379)
.++.|-||+|| .||++|.
T Consensus 36 ~~~~~~TlgG~il~~lg~iP~ 56 (87)
T d3deda1 36 AGGNIHTLAGVMLYQLGRVPS 56 (87)
T ss_dssp GGTCCCBHHHHHHHHHCSSCC
T ss_pred ccccccCHHHHHHHHhCcCCC
Confidence 36889999999 6788875
No 24
>d2cupa3 g.39.1.3 (A:8-34) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.30 E-value=13 Score=22.23 Aligned_cols=14 Identities=43% Similarity=0.909 Sum_probs=10.7
Q ss_pred cccCCcceEEeeccccc
Q 016990 24 CQNCRHFLCIVGVDSYA 40 (379)
Q Consensus 24 Cq~C~~~l~i~g~d~~~ 40 (379)
|-.|+.|+ |+|+-.
T Consensus 1 c~ecrkpi---gad~ke 14 (27)
T d2cupa3 1 CVECRKPI---GADSKE 14 (27)
T ss_dssp CSSSCCBC---CSSSCE
T ss_pred CccccCCc---CcchHH
Confidence 88999995 668753
No 25
>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.80 E-value=1.6e+02 Score=24.52 Aligned_cols=13 Identities=23% Similarity=0.455 Sum_probs=8.2
Q ss_pred HHHHHHHHhcccc
Q 016990 292 SQAHLELLKRTNV 304 (379)
Q Consensus 292 ~~~qLdkLrkTNV 304 (379)
+..-|..|....|
T Consensus 100 D~~~L~~L~dI~v 112 (222)
T d2e50a1 100 DEEAMHYLTRVEV 112 (222)
T ss_dssp HHHHGGGEEEEEE
T ss_pred HHHHHHhhhheee
Confidence 4444777777776
No 26
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.53 E-value=46 Score=23.65 Aligned_cols=28 Identities=14% Similarity=0.360 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 221 KIEEEERKLEAAIEETEKQNAEVNAELK 248 (379)
Q Consensus 221 ~Le~EE~~L~~eLeelEkE~~~l~~el~ 248 (379)
.|..++..|..+++.+.++...+..++.
T Consensus 51 ~L~~~~~~l~~~~~~l~~~~~~L~~~l~ 78 (83)
T d1nkpb_ 51 YMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666555555555554443
No 27
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=22.44 E-value=1.5e+02 Score=22.17 Aligned_cols=31 Identities=23% Similarity=0.166 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 269 NNFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (379)
Q Consensus 269 n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkL 299 (379)
..++..+..+.++...+..++.....++++|
T Consensus 98 ~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l 128 (133)
T d1fxkc_ 98 NELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555555554
No 28
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=22.08 E-value=1.4e+02 Score=22.01 Aligned_cols=28 Identities=18% Similarity=0.362 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 213 ADFLKEKLKIEEEERKLEAAIEETEKQN 240 (379)
Q Consensus 213 e~l~~el~~Le~EE~~L~~eLeelEkE~ 240 (379)
++|..+...+..+...+...+.++....
T Consensus 6 ~~Ff~eV~~Ir~~I~~i~~~v~~i~~~~ 33 (124)
T d1ez3a_ 6 DEFFEQVEEIRGFIDKIAENVEEVKRKH 33 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555443
No 29
>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=20.61 E-value=1.3e+02 Score=23.77 Aligned_cols=25 Identities=12% Similarity=0.097 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 274 QLIAHQEERDAISSKIEVSQAHLEL 298 (379)
Q Consensus 274 qL~~~~eE~~sl~~q~~~~~~qLdk 298 (379)
++...+.++.....+++.++.+|++
T Consensus 85 ~~~~~~~~~~~a~~~l~~a~~~l~~ 109 (237)
T d1vf7a_ 85 QYADANAAYLQSKAAVEQARINLRY 109 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhhcchhHHHHHHHhhhhcc
Confidence 3333444445555566666655543
No 30
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.29 E-value=78 Score=31.61 Aligned_cols=11 Identities=18% Similarity=0.344 Sum_probs=8.3
Q ss_pred cccCCCCCcee
Q 016990 13 LSVDPNVPRWV 23 (379)
Q Consensus 13 ~~~~~~~~~~~ 23 (379)
++-||.-|||.
T Consensus 355 ~g~~~AA~RYi 365 (760)
T d1bjta_ 355 GGKDAAAARYI 365 (760)
T ss_dssp TSTTCCCGGGC
T ss_pred CCCcchHHHHH
Confidence 46778888875
No 31
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=20.14 E-value=1.4e+02 Score=21.24 Aligned_cols=127 Identities=12% Similarity=0.076 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016990 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (379)
Q Consensus 174 td~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~el~~Le~EE~~L~~eLeelEkE~~~l~~el~~le~e 253 (379)
.......+..+++...........-+.......... ....-......+..+...+......+......+...+..+..+
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (185)
T d2ap3a1 53 RGKAVKDLIKNADDRLKEFEKEEDAIKKSEQDFKKA-KSHVDNIDNDVKRKEVKQLDDVLKEKYKLHSDYAKAYKKAVNS 131 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016990 254 SKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (379)
Q Consensus 254 ~~~L~eeEe~~w~e~n~~q~qL~~~~eE~~sl~~q~~~~~~qLdkLrk 301 (379)
...+...-.........+.-.+..+......+...+......+..+.+
T Consensus 132 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 179 (185)
T d2ap3a1 132 EKTLFKYLNQNDATQQGVNEKSKAIEQNYKKLKEVSDKYTKVLNKVQK 179 (185)
T ss_dssp HHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!