BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016992
(379 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OR8|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 340
Score = 369 bits (947), Expect = e-102, Method: Compositional matrix adjust.
Identities = 182/336 (54%), Positives = 232/336 (69%), Gaps = 26/336 (7%)
Query: 70 ADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDV 129
A+ S +D TS DYYFDSY+HFGIHEEMLKD VRT +Y+N ++ N+ LFKDKVVLDV
Sbjct: 5 AESSEKPNAEDMTSKDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDV 64
Query: 130 GAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189
G+GTGIL +F AKAGA V +ECS +++ A +IV+AN +V+T++KGK+EE+ELPV K
Sbjct: 65 GSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEK 124
Query: 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEF 249
VDIIISEWMGY L +E+MLNTVL+ARDKWL DG++ PD+A+LY+TAIED +YKD KI +
Sbjct: 125 VDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDYKIHW 184
Query: 250 WNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFT------- 302
W NVYGFDMSCIK A+ EPLVD VD Q+VTN L+K +DI + D +FT
Sbjct: 185 WENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKVEDLTFTSPFCLQV 244
Query: 303 -------------------CHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSL 343
CHK GFST P+S THWKQTV Y+ED LT+ GE I G++
Sbjct: 245 KRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYMEDYLTVKTGEEIFGTI 304
Query: 344 TVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 379
+ PN KN RD+D + +G+ +S Y+MR
Sbjct: 305 GMRPNAKNNRDLDFTIDLDFKGQLCELSCSTDYRMR 340
>pdb|1ORI|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 343
Score = 369 bits (947), Expect = e-102, Method: Compositional matrix adjust.
Identities = 182/336 (54%), Positives = 232/336 (69%), Gaps = 26/336 (7%)
Query: 70 ADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDV 129
A+ S +D TS DYYFDSY+HFGIHEEMLKD VRT +Y+N ++ N+ LFKDKVVLDV
Sbjct: 8 AESSEKPNAEDMTSKDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDV 67
Query: 130 GAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189
G+GTGIL +F AKAGA V +ECS +++ A +IV+AN +V+T++KGK+EE+ELPV K
Sbjct: 68 GSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEK 127
Query: 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEF 249
VDIIISEWMGY L +E+MLNTVL+ARDKWL DG++ PD+A+LY+TAIED +YKD KI +
Sbjct: 128 VDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDYKIHW 187
Query: 250 WNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFT------- 302
W NVYGFDMSCIK A+ EPLVD VD Q+VTN L+K +DI + D +FT
Sbjct: 188 WENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKVEDLTFTSPFCLQV 247
Query: 303 -------------------CHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSL 343
CHK GFST P+S THWKQTV Y+ED LT+ GE I G++
Sbjct: 248 KRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYMEDYLTVKTGEEIFGTI 307
Query: 344 TVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 379
+ PN KN RD+D + +G+ +S Y+MR
Sbjct: 308 GMRPNAKNNRDLDFTIDLDFKGQLCELSCSTDYRMR 343
>pdb|1ORH|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 353
Score = 369 bits (946), Expect = e-102, Method: Compositional matrix adjust.
Identities = 184/353 (52%), Positives = 238/353 (67%), Gaps = 26/353 (7%)
Query: 53 VAAPVDGTAIEDEAMCDADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQN 112
+AA I + + A+ S +D TS DYYFDSY+HFGIHEEMLKD VRT +Y+N
Sbjct: 1 MAAAEAANCIMEVSCGQAESSEKPNAEDMTSKDYYFDSYAHFGIHEEMLKDEVRTLTYRN 60
Query: 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNV 172
++ N+ LFKDKVVLDVG+GTGIL +F AKAGA V +ECS +++ A +IV+AN +V
Sbjct: 61 SMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHV 120
Query: 173 ITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASL 232
+T++KGK+EE+ELPV KVDIIISEWMGY L +++MLNTVL+ARDKWL DG++ PD+A+L
Sbjct: 121 VTIIKGKVEEVELPVEKVDIIISEWMGYCLFYQSMLNTVLHARDKWLAPDGLIFPDRATL 180
Query: 233 YLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDIS 292
Y+TAIED +YKD KI +W NVYGFDMSCIK A+ EPLVD VD Q+VTN L+K +DI
Sbjct: 181 YVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNACLIKEVDIY 240
Query: 293 KMGPGDASFT--------------------------CHKLMGFSTGPKSRATHWKQTVLY 326
+ D +FT CHK GFST P+S THWKQTV Y
Sbjct: 241 TVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFY 300
Query: 327 LEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 379
+ED LT+ GE I G++ + PN KN RD+D + +G+ +S Y+MR
Sbjct: 301 MEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTDYRMR 353
>pdb|3Q7E|A Chain A, Crystal Structure Of Rat Protein Arginine
Methyltransferase 1 (Prmt1) M48l Mutant
Length = 349
Score = 367 bits (943), Expect = e-102, Method: Compositional matrix adjust.
Identities = 181/336 (53%), Positives = 232/336 (69%), Gaps = 26/336 (7%)
Query: 70 ADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDV 129
A+ S +D TS DYYFDSY+HFGIHEE+LKD VRT +Y+N ++ N+ LFKDKVVLDV
Sbjct: 14 AESSEKPNAEDMTSKDYYFDSYAHFGIHEELLKDEVRTLTYRNSMFHNRHLFKDKVVLDV 73
Query: 130 GAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189
G+GTGIL +F AKAGA V +ECS +++ A +IV+AN +V+T++KGK+EE+ELPV K
Sbjct: 74 GSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEK 133
Query: 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEF 249
VDIIISEWMGY L +E+MLNTVL+ARDKWL DG++ PD+A+LY+TAIED +YKD KI +
Sbjct: 134 VDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDYKIHW 193
Query: 250 WNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFT------- 302
W NVYGFDMSCIK A+ EPLVD VD Q+VTN L+K +DI + D +FT
Sbjct: 194 WENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKVEDLTFTSPFCLQV 253
Query: 303 -------------------CHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSL 343
CHK GFST P+S THWKQTV Y+ED LT+ GE I G++
Sbjct: 254 KRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYMEDYLTVKTGEEIFGTI 313
Query: 344 TVAPNKKNPRDVDIMLKYSLQGRHSAISRIQYYKMR 379
+ PN KN RD+D + +G+ +S Y+MR
Sbjct: 314 GMRPNAKNNRDLDFTIDLDFKGQLCELSCSTDYRMR 349
>pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|2 Chain 2, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|3 Chain 3, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|4 Chain 4, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|5 Chain 5, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|6 Chain 6, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
Length = 328
Score = 313 bits (802), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 151/308 (49%), Positives = 204/308 (66%), Gaps = 28/308 (9%)
Query: 85 DYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG 144
DYYFDSY H+GIHEEML+D VRT SY+N I QNK LFKDK+VLDVG GTGILS+F AK G
Sbjct: 1 DYYFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHG 60
Query: 145 AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLF 204
A HV V+ S + MAK++VE NGFS+ IT+L+GK+E++ LP KVDIIISEWMGYFLL+
Sbjct: 61 AKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLY 120
Query: 205 ENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQ 264
E+M++TVLYARD +LV+ G++ PDK S++L +ED++YKD+K+ +W +VYGFD S
Sbjct: 121 ESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQYKDEKLNYWQDVYGFDYSPFVPL 180
Query: 265 AMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFTCH-------------------- 304
+ EP+VDTV++N + T L D++ + D +F +
Sbjct: 181 VLHEPIVDTVERNNVNTTSDKLIEFDLNTVKISDLAFKSNFKLTAKRQDMINGIVTWFDI 240
Query: 305 --------KLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVD 356
+ + FSTGP + THWKQT+ Y D L G+ I G L +PN+KN RD++
Sbjct: 241 VFPAPKGKRPVEFSTGPHAPYTHWKQTIFYFPDDLDAETGDTIEGELVCSPNEKNNRDLN 300
Query: 357 IMLKYSLQ 364
I + Y +
Sbjct: 301 IKISYKFE 308
>pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein
Arginine Methyltransferase Prmt3
Length = 321
Score = 285 bits (730), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 146/312 (46%), Positives = 193/312 (61%), Gaps = 34/312 (10%)
Query: 87 YFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAA 146
YF SY H+GIHEEMLKD VRT+SY++ IYQN +FKDKVVLDVG GTGILS+F AKAGA
Sbjct: 10 YFSSYGHYGIHEEMLKDKVRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAK 69
Query: 147 HVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFEN 206
V AV+ S++ A I+ N + I ++KGKIEE+ LPV KVD+IISEWMGYFLLFE+
Sbjct: 70 KVIAVDQSEILYQAMDIIRLNKLEDTIVLIKGKIEEVSLPVEKVDVIISEWMGYFLLFES 129
Query: 207 MLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAM 266
ML++VLYA+ K+L G V PD ++ L A+ D D+I FW++VYGF+MSC+KK +
Sbjct: 130 MLDSVLYAKSKYLAKGGSVYPDICTISLVAVSDVSKHADRIAFWDDVYGFNMSCMKKAVI 189
Query: 267 MEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFT------------------------ 302
E +V+ VD ++++ +K +D D F+
Sbjct: 190 PEAVVEVVDHKTLISDPCDIKHIDCHTTSISDLEFSSDFTLRTTKTAMCTAVAGYFDIYF 249
Query: 303 ---CHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIML 359
CH + FSTGP+S THWKQT+ LE + GEA+ G +TV NKK+PR + + L
Sbjct: 250 EKNCHNRVVFSTGPQSTKTHWKQTIFLLEKPFPVKAGEALKGKITVHKNKKDPRSLIVTL 309
Query: 360 -------KYSLQ 364
YSLQ
Sbjct: 310 TLNSSTQTYSLQ 321
>pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae)
Protein
pdb|3SMQ|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase 3
pdb|4HSG|A Chain A, Crystal Structure Of Human Prmt3 In Complex With An
Allosteric Inhibitor (Prmt3- Ktd)
Length = 340
Score = 284 bits (726), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 141/300 (47%), Positives = 189/300 (63%), Gaps = 27/300 (9%)
Query: 87 YFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAA 146
YF SY H+GIHEEMLKD +RT+SY++ IYQN +FKDKVVLDVG GTGILS+F AKAGA
Sbjct: 29 YFSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAK 88
Query: 147 HVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFEN 206
V V+ S++ A I+ N + IT++KGKIEE+ LPV KVD+IISEWMGYFLLFE+
Sbjct: 89 KVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFES 148
Query: 207 MLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQAM 266
ML++VLYA++K+L G V PD ++ L A+ D D+I FW++VYGF MSC+KK +
Sbjct: 149 MLDSVLYAKNKYLAKGGSVYPDICTISLVAVSDVNKHADRIAFWDDVYGFKMSCMKKAVI 208
Query: 267 MEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFT------------------------ 302
E +V+ +D +++ +K +D D F+
Sbjct: 209 PEAVVEVLDPKTLISEPCGIKHIDCHTTSISDLEFSSDFTLKITRTSMCTAIAGYFDIYF 268
Query: 303 ---CHKLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIML 359
CH + FSTGP+S THWKQTV LE ++ GEA+ G +TV NKK+PR + + L
Sbjct: 269 EKNCHNRVVFSTGPQSTKTHWKQTVFLLEKPFSVKAGEALKGKVTVHKNKKDPRSLTVTL 328
>pdb|4HC4|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (S.
Cerevisiae)
Length = 376
Score = 215 bits (547), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 118/317 (37%), Positives = 180/317 (56%), Gaps = 42/317 (13%)
Query: 87 YFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAA 146
Y++ YS +HEEM+ D VRT +Y+ I +N + K VLDVGAGTGILS+FCA+AGA
Sbjct: 48 YYECYSDVSVHEEMIADRVRTDAYRLGILRNWAALRGKTVLDVGAGTGILSIFCAQAGAR 107
Query: 147 HVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFEN 206
VYAVE S + A+++V NG + + VL G +E +ELP +VD I+SEWMGY LL E+
Sbjct: 108 RVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMGYGLLHES 166
Query: 207 MLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNV---YGFDMSCIKK 263
ML++VL+AR KWL + G++LP A L++ I D + + ++ FW+ V YG DMSC++
Sbjct: 167 MLSSVLHARTKWLKEGGLLLPASAELFIVPISD-QMLEWRLGFWSQVKQHYGVDMSCLEG 225
Query: 264 QAMM------EPLVDTVDQNQIVTNCQLLKTMDISKMG---------PGDASFTCH---K 305
A E +V + ++ Q +++S+ G G +C+
Sbjct: 226 FATRCLMGHSEIVVQGLSGEDVLARPQRFAQLELSRAGLEQELEAGVGGRFRCSCYGSAP 285
Query: 306 LMGF-------------------STGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVA 346
+ GF ST P ATHWKQ +LYL + + + + +SG +T+
Sbjct: 286 MHGFAIWFQVTFPGGESEKPLVLSTSPFHPATHWKQALLYLNEPVQVEQDTDVSGEITLL 345
Query: 347 PNKKNPRDVDIMLKYSL 363
P++ NPR + ++L+Y +
Sbjct: 346 PSRDNPRRLRVLLRYKV 362
>pdb|3R0Q|C Chain C, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|G Chain G, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|A Chain A, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|E Chain E, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
Length = 376
Score = 171 bits (433), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 109/328 (33%), Positives = 177/328 (53%), Gaps = 56/328 (17%)
Query: 87 YFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAA 146
YF +YS ++ML D VR +Y N ++QNK F+ K VLDVG G+GIL+++ A+AGA
Sbjct: 28 YFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGAR 87
Query: 147 HVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFEN 206
VYAVE ++MA+ A+ +V+AN +++ V++G +E+I LP KVD+IISEWMGYFLL E+
Sbjct: 88 KVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEWMGYFLLRES 146
Query: 207 MLNTVLYARDKWLVDDGIVLPDKASLYLTAIED--AEYK----DDKIEFWNNV------- 253
M ++V+ ARD+WL G++ P A ++L I+ A+ K D + W+N
Sbjct: 147 MFDSVISARDRWLKPTGVMYPSHARMWLAPIKSNIADRKRNDFDGAMADWHNFSDEIKSY 206
Query: 254 YGFDMSCIKKQAMME--------PLVDTVDQNQIVTNCQLLKTMD-----ISKMGPGDAS 300
YG DM + K E + + ++ QI+ ++K MD +S++ ++
Sbjct: 207 YGVDMGVLTKPFAEEQEKYYIQTAMWNDLNPQQIIGTPTIVKEMDCLTASVSEIEEVRSN 266
Query: 301 FTC------HKLMGF----------------------STGP-KSRATHWKQTVLYLEDVL 331
T +L GF +T P + THW Q V + + +
Sbjct: 267 VTSVINMEHTRLCGFGGWFDVQFSGRKEDPAQQEIELTTAPSEQHCTHWGQQVFIMSNPI 326
Query: 332 TICEGEAISGSLTVAPNKKNPRDVDIML 359
+ EG+ ++ L ++ +K+N R ++I L
Sbjct: 327 NVEEGDNLNLGLLMSRSKENHRLMEIEL 354
>pdb|2Y1W|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
Length = 348
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 112/333 (33%), Positives = 168/333 (50%), Gaps = 39/333 (11%)
Query: 73 SMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAG 132
S+ +++SA YF Y + + M++D VRT +YQ I QN FKDK+VLDVG G
Sbjct: 1 SVFSERTEESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCG 60
Query: 133 TGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192
+GILS F A+AGA +YAVE S MA A+ +V++N ++ I V+ GK+EE+ LP +VDI
Sbjct: 61 SGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDI 119
Query: 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEY---KDDKIEF 249
IISE MGY L E ML + L+A+ K+L G + P ++L D + + K F
Sbjct: 120 IISEPMGYMLFNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANF 178
Query: 250 W--NNVYGFDMSCIKKQAMME----PLVDTVDQNQIVTNCQLLKTMDISKMGPGDA---- 299
W + +G D+S ++ A+ E P+VDT D +I+ + T++ + GD
Sbjct: 179 WYQPSFHGVDLSALRGAAVDEYFRQPVVDTFD-IRILMAKSVKYTVNFLEAKEGDLHRIE 237
Query: 300 -SFTCHKL----------------------MGFSTGPKSRATHWKQTVLYLEDVLTICEG 336
F H L + ST P THW Q + L G
Sbjct: 238 IPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKAG 297
Query: 337 EAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSA 369
+ +SG+ + NK+ D+ I+ + G S+
Sbjct: 298 DTLSGTCLLIANKRQSYDISIVAQVDQTGSKSS 330
>pdb|3B3J|A Chain A, The 2.55 A Crystal Structure Of The Apo Catalytic Domain
Of Coactivator-Associated Arginine Methyl Transferase
I(Carm1:28-507, Residues 28-146 And 479-507 Not Ordered)
Length = 480
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 112/333 (33%), Positives = 168/333 (50%), Gaps = 39/333 (11%)
Query: 73 SMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAG 132
S+ +++SA YF Y + + M++D VRT +YQ I QN FKDK+VLDVG G
Sbjct: 109 SVFSERTEESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCG 168
Query: 133 TGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192
+GILS F A+AGA +YAVE S MA A+ +V++N ++ I V+ GK+EE+ LP +VDI
Sbjct: 169 SGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDI 227
Query: 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEY---KDDKIEF 249
IISE MGY L E ML + L+A+ K+L G + P ++L D + + K F
Sbjct: 228 IISEPMGYMLFNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANF 286
Query: 250 W--NNVYGFDMSCIKKQAMME----PLVDTVDQNQIVTNCQLLKTMDISKMGPGDA---- 299
W + +G D+S ++ A+ E P+VDT D +I+ + T++ + GD
Sbjct: 287 WYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDI-RILMAKSVKYTVNFLEAKEGDLHRIE 345
Query: 300 -SFTCHKL----------------------MGFSTGPKSRATHWKQTVLYLEDVLTICEG 336
F H L + ST P THW Q + L G
Sbjct: 346 IPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKAG 405
Query: 337 EAISGSLTVAPNKKNPRDVDIMLKYSLQGRHSA 369
+ +SG+ + NK+ D+ I+ + G S+
Sbjct: 406 DTLSGTCLLIANKRQSYDISIVAQVDQTGSKSS 438
>pdb|4IKP|A Chain A, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|B Chain B, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|C Chain C, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|D Chain D, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
Length = 341
Score = 165 bits (417), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 111/326 (34%), Positives = 166/326 (50%), Gaps = 39/326 (11%)
Query: 80 DKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLF 139
+++SA YF Y + + M++D VRT +YQ I QN FKDK+VLDVG G+GILS F
Sbjct: 3 EESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFF 62
Query: 140 CAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199
A+AGA +YAVE S MA A+ +V++N ++ I V+ GK+EE+ LP +VDIIISE MG
Sbjct: 63 AAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMG 121
Query: 200 YFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEY---KDDKIEFW--NNVY 254
Y L E ML + L+A+ K+L G + P ++L D + + K FW + +
Sbjct: 122 YMLFNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFH 180
Query: 255 GFDMSCIKKQAMME----PLVDTVDQNQIVTNCQLLKTMDISKMGPGDA-----SFTCHK 305
G D+S ++ A+ E P+VDT D +I+ + T++ + GD F H
Sbjct: 181 GVDLSALRGAAVDEYFRQPVVDTFD-IRILMAKSVKYTVNFLEAKEGDLHRIEIPFKFHM 239
Query: 306 L----------------------MGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSL 343
L + ST P THW Q + L G+ +SG+
Sbjct: 240 LHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKAGDTLSGTC 299
Query: 344 TVAPNKKNPRDVDIMLKYSLQGRHSA 369
+ NK+ D+ I+ + G S+
Sbjct: 300 LLIANKRQSYDISIVAQVDQTGSKSS 325
>pdb|3B3F|A Chain A, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|B Chain B, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|C Chain C, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|D Chain D, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3G|A Chain A, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480).
pdb|3B3G|B Chain B, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480)
Length = 341
Score = 165 bits (417), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 111/326 (34%), Positives = 166/326 (50%), Gaps = 39/326 (11%)
Query: 80 DKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLF 139
+++SA YF Y + + M++D VRT +YQ I QN FKDK+VLDVG G+GILS F
Sbjct: 4 EESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFF 63
Query: 140 CAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199
A+AGA +YAVE S MA A+ +V++N ++ I V+ GK+EE+ LP +VDIIISE MG
Sbjct: 64 AAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMG 122
Query: 200 YFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEY---KDDKIEFW--NNVY 254
Y L E ML + L+A+ K+L G + P ++L D + + K FW + +
Sbjct: 123 YMLFNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFH 181
Query: 255 GFDMSCIKKQAMME----PLVDTVDQNQIVTNCQLLKTMDISKMGPGDA-----SFTCHK 305
G D+S ++ A+ E P+VDT D +I+ + T++ + GD F H
Sbjct: 182 GVDLSALRGAAVDEYFRQPVVDTFD-IRILMAKSVKYTVNFLEAKEGDLHRIEIPFKFHM 240
Query: 306 L----------------------MGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSL 343
L + ST P THW Q + L G+ +SG+
Sbjct: 241 LHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKAGDTLSGTC 300
Query: 344 TVAPNKKNPRDVDIMLKYSLQGRHSA 369
+ NK+ D+ I+ + G S+
Sbjct: 301 LLIANKRQSYDISIVAQVDQTGSKSS 326
>pdb|2V74|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|D Chain D, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|F Chain F, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|H Chain H, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V7E|A Chain A, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
pdb|2V7E|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
Length = 346
Score = 162 bits (410), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 109/319 (34%), Positives = 161/319 (50%), Gaps = 39/319 (12%)
Query: 87 YFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAA 146
YF Y + + M++D VRT +YQ I QN FKDK+VLDVG G+GILS F A+AGA
Sbjct: 6 YFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGAR 65
Query: 147 HVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFEN 206
+YAVE S MA A+ +V++N ++ I V+ GK+EE+ LP +VDIIISE MGY L E
Sbjct: 66 KIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGYMLFNER 124
Query: 207 MLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEY---KDDKIEFW--NNVYGFDMSCI 261
ML + L+A+ K+L G + P ++L D + + K FW + +G D+S +
Sbjct: 125 MLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFHGVDLSAL 183
Query: 262 KKQAMME----PLVDTVDQNQIVTNCQLLKTMDISKMGPGDA-----SFTCHKL------ 306
+ A+ E P+VDT D +I+ + T++ + GD F H L
Sbjct: 184 RGAAVDEYFRQPVVDTFD-IRILMAKSVKYTVNFLEAKEGDLHRIEIPFKFHMLHSGLVH 242
Query: 307 ----------------MGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKK 350
+ ST P THW Q + L G+ +SG+ + NK+
Sbjct: 243 GLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKR 302
Query: 351 NPRDVDIMLKYSLQGRHSA 369
D+ I+ + G S+
Sbjct: 303 QSYDISIVAQVDQTGSKSS 321
>pdb|4G56|A Chain A, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|C Chain C, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 657
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 17/159 (10%)
Query: 97 HEEMLKDVVRTKSYQNVIYQ---NKFLFKDK-----VVLDVGAGTGIL---SLFCAKAGA 145
+E KD V+ YQ +Y+ ++ ++K ++ +GAG G L SL AK
Sbjct: 344 YEVFEKDPVKYSQYQQAVYKCLLDRVPEEEKETNIQILXVLGAGRGPLVNASLRAAKQAE 403
Query: 146 AH--VYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLL 203
VYAVE + A + + + + +TV+ G E + P K DII+SE +G F
Sbjct: 404 RKIKVYAVEKNPNAVITLEGWRYEEWGSQVTVVSGDXREWKAP-EKADIIVSELLGSF-- 460
Query: 204 FENMLNT-VLYARDKWLVDDGIVLPDKASLYLTAIEDAE 241
+N L+ L +L DDG+ +P + + YL I ++
Sbjct: 461 GDNELSPECLDGAQHFLKDDGVSIPGEYTSYLAPISSSK 499
>pdb|4GQB|A Chain A, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 637
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 80/163 (49%), Gaps = 17/163 (10%)
Query: 97 HEEMLKDVVRTKSYQNVIYQ---NKFLFKDK-----VVLDVGAGTGIL---SLFCAKAGA 145
+E KD ++ YQ IY+ ++ ++K V++ +GAG G L SL AK
Sbjct: 324 YEVFEKDPIKYSQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQAD 383
Query: 146 AHV--YAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLL 203
+ YAVE + A + + + + + +TV+ + E P K DII+SE +G F
Sbjct: 384 RRIKLYAVEKNPNAVVTLENWQFEEWGSQVTVVSSDMREWVAP-EKADIIVSELLGSFA- 441
Query: 204 FENMLNT-VLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDD 245
+N L+ L +L DDG+ +P + + +L I ++ ++
Sbjct: 442 -DNELSPECLDGAQHFLKDDGVSIPGEYTSFLAPISSSKLYNE 483
>pdb|3UJ7|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sam And Po4
pdb|3UJ7|B Chain B, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sam And Po4
pdb|3UJ8|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sinefungin And Po4
pdb|3UJ9|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Phosphocholine
pdb|3UJA|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Phosphoethanolamine
pdb|3UJB|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sah And Phosphoethanolamine
pdb|3UJB|B Chain B, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sah And Phosphoethanolamine
pdb|4FGZ|A Chain A, Crystal Structure Of Phosphoethanolamine Methyltransferase
From Plasmodium Falciparum In Complex With Amodiaquine
pdb|4FGZ|B Chain B, Crystal Structure Of Phosphoethanolamine Methyltransferase
From Plasmodium Falciparum In Complex With Amodiaquine
Length = 266
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVE-CSQMANMAKQIVEANGFSNVITVLKGKIEEIE 184
VLD+G+G G ++ + AH + ++ CS + NMA + V N N I I E
Sbjct: 59 VLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN---NKIIFEANDILTKE 115
Query: 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226
P D+I S L EN N + KWL G +L
Sbjct: 116 FPENNFDLIYSRDAILHLSLENK-NKLFQKCYKWLKPTGTLL 156
>pdb|3UJD|A Chain A, Phosphoethanolamine Methyltransferase Mutant (Y19f) From
Plasmodium Falciparum In Complex With Phosphocholine
Length = 266
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVE-CSQMANMAKQIVEANGFSNVITVLKGKIEEIE 184
VLD+G+G G ++ + AH + ++ CS + NMA + V N N I I E
Sbjct: 59 VLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN---NKIIFEANDILTKE 115
Query: 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226
P D+I S L EN N + KWL G +L
Sbjct: 116 FPENNFDLIYSRDAILHLSLENK-NKLFQKCYKWLKPTGTLL 156
>pdb|3UJC|A Chain A, Phosphoethanolamine Methyltransferase Mutant (H132a) From
Plasmodium Falciparum In Complex With Phosphocholine
Length = 266
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVE-CSQMANMAKQIVEANGFSNVITVLKGKIEEIE 184
VLD+G+G G ++ + AH + ++ CS + NMA + V N N I I E
Sbjct: 59 VLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN---NKIIFEANDILTKE 115
Query: 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226
P D+I S L EN N + KWL G +L
Sbjct: 116 FPENNFDLIYSRDAILALSLENK-NKLFQKCYKWLKPTGTLL 156
>pdb|3UJ6|A Chain A, Semet Phosphoethanolamine Methyltransferase From
Plasmodium Falciparum In Complex With Sam And Po4
Length = 266
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 5/102 (4%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVE-CSQMANMAKQIVEANGFSNVITVLKGKIEEIE 184
VLD+G+G G + + AH + ++ CS + N A + V N N I I E
Sbjct: 59 VLDIGSGLGGGCXYINEKYGAHTHGIDICSNIVNXANERVSGN---NKIIFEANDILTKE 115
Query: 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226
P D+I S L EN N + KWL G +L
Sbjct: 116 FPENNFDLIYSRDAILHLSLENK-NKLFQKCYKWLKPTGTLL 156
>pdb|3DLC|A Chain A, Crystal Structure Of A Putative
S-Adenosyl-L-Methionine-Dependent Methyltransferase
(Mmp1179) From Methanococcus Maripaludis At 1.15 A
Resolution
Length = 219
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMAN--MAKQIVEANG 168
+N+I N+F +D+G+G G LS+ AK + A++ S+ N K I +AN
Sbjct: 34 ENII--NRFGITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHXNEIALKNIADAN- 90
Query: 169 FSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 201
++ I +++G + I + D+I+S +F
Sbjct: 91 LNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFF 123
>pdb|3G5L|A Chain A, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
pdb|3G5L|B Chain B, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
Length = 253
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 9/119 (7%)
Query: 78 EDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILS 137
+++K ++F+ YS +E LK + ++ F K VLD+G G G
Sbjct: 4 KENKYDDKHFFEQYSQMPRSKEGLKAAGEWHELKKMLPD----FNQKTVLDLGCGFGWHC 59
Query: 138 LFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195
++ A+ GA V ++ S+ M AK+ S V+ + IE+I + ++++S
Sbjct: 60 IYAAEHGAKKVLGIDLSERMLTEAKRKTT----SPVVCYEQKAIEDIAIEPDAYNVVLS 114
>pdb|1NV8|A Chain A, N5-Glutamine Methyltransferase, Hemk
pdb|1NV8|B Chain B, N5-Glutamine Methyltransferase, Hemk
pdb|1NV9|A Chain A, Hemk, Apo Structure
Length = 284
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 73/167 (43%), Gaps = 26/167 (15%)
Query: 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGKIEE 182
K V D+G G+G + + AK A V+A + S A +A++ E +G S+ V KG+
Sbjct: 125 KTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGE--- 181
Query: 183 IELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEY 242
+ + F E +L+ Y + + ++ +L+
Sbjct: 182 ----------FLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALF--------G 223
Query: 243 KDDKIEFWNNVYG-FDMSCIKKQAMMEPLVDTVDQ-NQIVTNCQLLK 287
+D ++F+ +G +D S K +ME D V++ +IV++ LK
Sbjct: 224 GEDGLDFYREFFGRYDTSG--KIVLMEIGEDQVEELKKIVSDTVFLK 268
>pdb|1SG9|A Chain A, Crystal Structure Of Thermotoga Maritima Protein Hemk, An
N5-Glutamine Methyltransferase
pdb|1SG9|B Chain B, Crystal Structure Of Thermotoga Maritima Protein Hemk, An
N5-Glutamine Methyltransferase
pdb|1SG9|C Chain C, Crystal Structure Of Thermotoga Maritima Protein Hemk, An
N5-Glutamine Methyltransferase
Length = 282
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 73/167 (43%), Gaps = 26/167 (15%)
Query: 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGKIEE 182
K V D+G G+G + + AK A V+A + S A +A++ E +G S+ V KG+
Sbjct: 123 KTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGE--- 179
Query: 183 IELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEY 242
+ + F E +L+ Y + + ++ +L+
Sbjct: 180 ----------FLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALF--------G 221
Query: 243 KDDKIEFWNNVYG-FDMSCIKKQAMMEPLVDTVDQ-NQIVTNCQLLK 287
+D ++F+ +G +D S K +ME D V++ +IV++ LK
Sbjct: 222 GEDGLDFYREFFGRYDTSG--KIVLMEIGEDQVEELKKIVSDTVFLK 266
>pdb|1WY7|A Chain A, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|B Chain B, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|C Chain C, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|D Chain D, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
Length = 207
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANG-FSNVITVLKGKIEE 182
KVV D+GAGTG+LS GA V VE + A ++E G F V G + E
Sbjct: 51 KVVADLGAGTGVLSYGALLLGAKEVICVEVDKEA--VDVLIENLGEFKGKFKVFIGDVSE 108
Query: 183 IELPVTKVDIII 194
++VDI+I
Sbjct: 109 FN---SRVDIVI 117
>pdb|1VQ1|A Chain A, Crystal Structure Of N5-Glutamine Methyltransferase,
Hemk(Ec 2.1.1.-) (Tm0488) From Thermotoga Maritima At
2.80 A Resolution
pdb|1VQ1|B Chain B, Crystal Structure Of N5-Glutamine Methyltransferase,
Hemk(Ec 2.1.1.-) (Tm0488) From Thermotoga Maritima At
2.80 A Resolution
Length = 294
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQIVEANGFSNVITVLKGKIEE 182
K V D+G G+G + + AK A V+A + S A +A++ E +G S+ V KG+ E
Sbjct: 135 KTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLE 194
>pdb|3F4K|A Chain A, Crystal Structure Of A Probable Methyltransferase From
Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Target Btr309
Length = 257
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 12/137 (8%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ--MANMAKQIVEANGFSNVITVLK 177
L D + D+G GTG +LF A + ++ + + V+AN ++ + +
Sbjct: 44 LTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANC-ADRVKGIT 102
Query: 178 GKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAI 237
G ++ + ++D+I SE Y + FE +N K+L G + +AS + T+
Sbjct: 103 GSMDNLPFQNEELDLIWSEGAIYNIGFERGMNEW----SKYLKKGGFIAVSEAS-WFTSE 157
Query: 238 EDAEYKDDKIEFWNNVY 254
AE +D FW + Y
Sbjct: 158 RPAEIED----FWMDAY 170
>pdb|3SVZ|A Chain A, Crystal Structure Of Apo Bt_2972, A Methyltransferase From
Bacteroides Thetaiotaomicron
pdb|3SVZ|B Chain B, Crystal Structure Of Apo Bt_2972, A Methyltransferase From
Bacteroides Thetaiotaomicron
pdb|3SXJ|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3SXJ|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
Length = 263
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 12/137 (8%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ--MANMAKQIVEANGFSNVITVLK 177
L D + D+G GTG +LF A + ++ + + V+AN ++ + +
Sbjct: 50 LTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANC-ADRVKGIT 108
Query: 178 GKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAI 237
G ++ + ++D+I SE Y + FE +N K+L G + +AS + T+
Sbjct: 109 GSMDNLPFQNEELDLIWSEGAIYNIGFERGMNEW----SKYLKKGGFIAVSEAS-WFTSE 163
Query: 238 EDAEYKDDKIEFWNNVY 254
AE +D FW + Y
Sbjct: 164 RPAEIED----FWMDAY 176
>pdb|3EGE|A Chain A, Crystal Structure Of Putative Methyltransferase From
Antibiotic Biosynthesis Pathway (Yp_324569.1) From
Anabaena Variabilis Atcc 29413 At 2.40 A Resolution
Length = 261
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 15/80 (18%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS----QMANMAKQIVEANGFSNVITV 175
L K V+ D+GAGTG S+ A G VYAVE S Q A + Q+ G++
Sbjct: 32 LPKGSVIADIGAGTGGYSVALANQG-LFVYAVEPSIVXRQQAVVHPQVEWFTGYA----- 85
Query: 176 LKGKIEEIELPVTKVDIIIS 195
E + LP VD +IS
Sbjct: 86 -----ENLALPDKSVDGVIS 100
>pdb|2AVN|A Chain A, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
Methyltransferase-Related Protein (Tm1389) From
Thermotoga Maritima Msb8 At 2.35 A Resolution
pdb|2AVN|B Chain B, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
Methyltransferase-Related Protein (Tm1389) From
Thermotoga Maritima Msb8 At 2.35 A Resolution
Length = 260
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 9/108 (8%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIEL 185
VLD+G GTG SLF + G V + + +K+ +E V V++ K E++
Sbjct: 58 VLDLGGGTGKWSLFLQERGFEVV-------LVDPSKEXLEVAREKGVKNVVEAKAEDLPF 110
Query: 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLY 233
P + +++ +G L + + + LV DG+++ + Y
Sbjct: 111 PSGAFEAVLA--LGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFY 156
>pdb|2PJD|A Chain A, Crystal Structure Of 16s Rrna Methyltransferase Rsmc
Length = 343
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 10/67 (14%)
Query: 126 VLDVGAGTGILSLFCAKAGA--------AHVYAVECSQMANMAKQIVEANGF-SNVITVL 176
VLDVG G G+LS+ A+ AVE S+ A +A VE F SNV + +
Sbjct: 200 VLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASR-ATLAANGVEGEVFASNVFSEV 258
Query: 177 KGKIEEI 183
KG+ + I
Sbjct: 259 KGRFDXI 265
>pdb|3FYC|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
pdb|3FYC|B Chain B, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
Length = 265
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 108 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ 155
K++ N ++ L KD VVL++G G GIL+ AK A VY +E +
Sbjct: 9 KNFVNKAVESANLTKDDVVLEIGLGKGILTEELAK-NAKKVYVIEIDK 55
>pdb|3FYD|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
Length = 263
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 108 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ 155
K++ N ++ L KD VVL++G G GIL+ AK A VY +E +
Sbjct: 7 KNFVNKAVESANLTKDDVVLEIGLGKGILTEELAK-NAKKVYVIEIDK 53
>pdb|3KKZ|A Chain A, Crystal Structure Of The Q5les9_bacfn Protein From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr250.
pdb|3KKZ|B Chain B, Crystal Structure Of The Q5les9_bacfn Protein From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr250
Length = 267
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 10/136 (7%)
Query: 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVE-CSQMANMAKQIVEANGFSNVITVLKG 178
L + ++ D+G GTG + A V ++ S ++ + +G N +T + G
Sbjct: 44 LTEKSLIADIGCGTGGQTXVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVG 103
Query: 179 KIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIE 238
+++ ++D+I SE Y + FE LN K+L G + + S + T
Sbjct: 104 SXDDLPFRNEELDLIWSEGAIYNIGFERGLN----EWRKYLKKGGYLAVSECS-WFTDER 158
Query: 239 DAEYKDDKIEFWNNVY 254
AE D FW + Y
Sbjct: 159 PAEIND----FWXDAY 170
>pdb|3GRR|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl
Homocysteine And Methanocaldococcus Jannaschi Dim1.
pdb|3GRU|A Chain A, Crystal Structure Of The Complex Between Amp And
Methanocaldococcus Jannaschi Dim1
pdb|3GRV|A Chain A, Crystal Structure Of The Complex Between Adenosine And
Methanocaldococcus Jannaschi Dim1
pdb|3GRY|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl
Methionine And Methanocaldococcus Jannaschi Dim1
Length = 295
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 108 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ 155
K++ N ++ L KD VVL++G G GIL+ AK A VY +E +
Sbjct: 36 KNFVNKAVESANLTKDDVVLEIGLGKGILTEELAK-NAKKVYVIEIDK 82
>pdb|3LPM|A Chain A, Crystal Structure Of Putative Methyltransferase Small
Domain Protein From Listeria Monocytogenes
pdb|3LPM|B Chain B, Crystal Structure Of Putative Methyltransferase Small
Domain Protein From Listeria Monocytogenes
Length = 259
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184
++D+ +G GI+ L + A + VE + +A+ AK+ V N + I +++ +++I
Sbjct: 53 IIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADXAKRSVAYNQLEDQIEIIEYDLKKIT 112
Query: 185 --LPVTKVDII 193
+P + DI+
Sbjct: 113 DLIPKERADIV 123
>pdb|3GRZ|A Chain A, Crystal Structure Of Ribosomal Protein L11 Methylase From
Lactobacillus Delbrueckii Subsp. Bulgaricus
pdb|3GRZ|B Chain B, Crystal Structure Of Ribosomal Protein L11 Methylase From
Lactobacillus Delbrueckii Subsp. Bulgaricus
Length = 205
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECS-QMANMAKQIVEANGFSNVITVL 176
+ + K V DVG G+GIL++ K GA V A + S + A++ NG ++
Sbjct: 56 RAMVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQK 115
Query: 177 KGKIEEIELPVTKVDIIISEWMGYFLL 203
+ +++ K D+I++ + LL
Sbjct: 116 TSLLADVD---GKFDLIVANILAEILL 139
>pdb|3RGF|A Chain A, Crystal Structure Of Human Cdk8CYCC
Length = 405
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
Query: 242 YKDDKIEFWNNVYGF----DMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPG 297
Y D+++ NV GF D IKK L+ +N TNC L+K M+ K+ P
Sbjct: 249 YHHDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRN-TYTNCSLIKYMEKHKVKPD 307
Query: 298 DASF-TCHKLMGFSTGPKSRATHWKQTVLYLEDVL 331
+F KL+ + + Q +LED L
Sbjct: 308 SKAFHLLQKLLTMDPIKRITSEQAMQDPYFLEDPL 342
>pdb|1PCL|A Chain A, Unusual Structural Features In The Parallel Beta-Helix In
Pectate Lyases
Length = 355
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 9/65 (13%)
Query: 46 SSILDDSVAAPVDGTAIEDEAMCDADVSMIDGE---------DDKTSADYYFDSYSHFGI 96
++++D+S VD I D + D + DGE D K +DY SYS F +
Sbjct: 135 AAVIDNSTNVWVDHVTISDGSFTDDKYTTKDGEKYVQHDGALDIKKGSDYVTISYSRFEL 194
Query: 97 HEEML 101
H++ +
Sbjct: 195 HDKTI 199
>pdb|2VN8|A Chain A, Crystal Structure Of Human Reticulon 4 Interacting Protein
1 In Complex With Nadph
pdb|2VN8|B Chain B, Crystal Structure Of Human Reticulon 4 Interacting Protein
1 In Complex With Nadph
Length = 375
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIE 181
K ++L G G ++ KA AHV AV CSQ A+ ++V G +VI G +E
Sbjct: 185 KRVLILGASGGVGTFAIQVMKAWDAHVTAV-CSQDAS---ELVRKLGADDVIDYKSGSVE 240
Query: 182 EIELPVTKVDIII 194
E + D I+
Sbjct: 241 EQLKSLKPFDFIL 253
>pdb|1I1I|P Chain P, Neurolysin (Endopeptidase 24.16) Crystal Structure
Length = 681
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 249 FWNNVYGFDM--SCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDI 291
W+ V+ DM SC KK+ +M P V +N I+ L MD+
Sbjct: 614 LWSEVFSMDMFHSCFKKEGIMNPEVGMKYRNLILKPGGSLDGMDM 658
>pdb|2O3E|A Chain A, Crystal Structure Of Engineered Neurolysin With Thimet
Oligopeptidase Specificity For Neurotensin Cleavage Site
Length = 678
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 249 FWNNVYGFDM--SCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDI 291
W+ V+ DM SC KK+ +M P V +N I+ L MD+
Sbjct: 614 LWSEVFSMDMFHSCFKKEGIMNPEVGMKYRNLILKPGGSLDGMDM 658
>pdb|4HTF|A Chain A, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase From Escherichia Coli In Complex With
S-Adenosylmethionine
Length = 285
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIEL 185
VLD G G G ++ A+ G + +Q + AKQ EA G S+ + +++
Sbjct: 72 VLDAGGGEGQTAIKXAERGHQVILCDLSAQXIDRAKQAAEAKGVSDNXQFIHCAAQDVAS 131
Query: 186 PV-TKVDII----ISEWM 198
+ T VD+I + EW+
Sbjct: 132 HLETPVDLILFHAVLEWV 149
>pdb|4HTF|B Chain B, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase From Escherichia Coli In Complex With
S-Adenosylmethionine
Length = 285
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 126 VLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIEL 185
VLD G G G ++ A+ G + +Q + AKQ EA G S+ + +++
Sbjct: 72 VLDAGGGEGQTAIKXAERGHQVILCDLSAQXIDRAKQAAEAKGVSDNXQFIHCAAQDVAS 131
Query: 186 PV-TKVDII----ISEWM 198
+ T VD+I + EW+
Sbjct: 132 HLETPVDLILFHAVLEWV 149
>pdb|3P9N|A Chain A, Rv2966c Of M. Tuberculosis Is A Rsmd-Like
Methyltransferase
Length = 189
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 103 DVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQM-ANMAK 161
D VR +S N++ + L VLD+ AG+G L L GAA V VE Q A +
Sbjct: 27 DRVR-ESLFNIVTARRDL-TGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIA 84
Query: 162 QIVEANGFSNVITVLKG 178
+ +EA G S T+ +G
Sbjct: 85 RNIEALGLSGA-TLRRG 100
>pdb|2VS1|A Chain A, The Crystal Structure Of Pyrococcus Abyssi Trna
(Uracil-54, C5)-Methyltransferase In Complex With
S-Adenosyl-L- Homocysteine
Length = 425
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 106 RTKSYQ--NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQ 162
+T SYQ N++ + L + + +LD+ +G G ++ AK G +V + ++ A MA++
Sbjct: 272 QTNSYQAVNLVRKVSELVEGEKILDMYSGVGTFGIYLAKRG-FNVKGFDSNEFAIEMARR 330
Query: 163 IVEAN 167
VE N
Sbjct: 331 NVEIN 335
>pdb|2JJQ|A Chain A, The Crystal Structure Of Pyrococcus Abyssi Trna
(Uracil-54, C5)-Methyltransferase In Complex With
S-Adenosyl-L- Homocysteine
Length = 425
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 106 RTKSYQ--NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMA-NMAKQ 162
+T SYQ N++ + L + + +LD+ +G G ++ AK G +V + ++ A MA++
Sbjct: 272 QTNSYQAVNLVRKVSELVEGEKILDMYSGVGTFGIYLAKRG-FNVKGFDSNEFAIEMARR 330
Query: 163 IVEAN 167
VE N
Sbjct: 331 NVEIN 335
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,635,011
Number of Sequences: 62578
Number of extensions: 442399
Number of successful extensions: 974
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 927
Number of HSP's gapped (non-prelim): 65
length of query: 379
length of database: 14,973,337
effective HSP length: 100
effective length of query: 279
effective length of database: 8,715,537
effective search space: 2431634823
effective search space used: 2431634823
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)